Psyllid ID: psy14257
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | 2.2.26 [Sep-21-2011] | |||||||
| Q9NZR2 | 4599 | Low-density lipoprotein r | yes | N/A | 0.828 | 0.151 | 0.332 | 1e-109 | |
| Q07954 | 4544 | Prolow-density lipoprotei | no | N/A | 0.545 | 0.101 | 0.393 | 1e-101 | |
| Q91ZX7 | 4545 | Prolow-density lipoprotei | yes | N/A | 0.545 | 0.100 | 0.393 | 1e-100 | |
| P98157 | 4543 | Low-density lipoprotein r | yes | N/A | 0.545 | 0.101 | 0.387 | 1e-99 | |
| Q9JI18 | 4599 | Low-density lipoprotein r | no | N/A | 0.545 | 0.099 | 0.385 | 1e-96 | |
| O88572 | 1613 | Low-density lipoprotein r | no | N/A | 0.526 | 0.274 | 0.313 | 1e-70 | |
| O75581 | 1613 | Low-density lipoprotein r | no | N/A | 0.526 | 0.274 | 0.305 | 5e-69 | |
| O75197 | 1615 | Low-density lipoprotein r | no | N/A | 0.502 | 0.261 | 0.314 | 5e-65 | |
| Q91VN0 | 1614 | Low-density lipoprotein r | no | N/A | 0.502 | 0.262 | 0.309 | 8e-64 | |
| O75096 | 1905 | Low-density lipoprotein r | no | N/A | 0.495 | 0.218 | 0.286 | 9e-62 |
| >sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 284/854 (33%), Positives = 414/854 (48%), Gaps = 157/854 (18%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRK------CDESHFTCNETLRCIPLAWACDGQP 56
CI +W CDGD DC D SDE +C + C+ + F C+ C+P W CDG+
Sbjct: 1018 CIPGHWACDGDNDCGDFSDEAQINCTKEEIHSPAGCNGNEFQCHPDGNCVPDLWRCDGE- 1076
Query: 57 DCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVC 116
DC D SDE C N TI +F C R CI KA VC
Sbjct: 1077 --------------KDCEDGSDEKGC----NGTIRLCD-HKTKFSCWSTGR-CINKAWVC 1116
Query: 117 DGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQ----PDLITCSYL 172
DG+ C + DE CD C H C N + +C+ P + PD YL
Sbjct: 1117 DGDIDCEDQSDEDDCDSFLCGPP--KHPCAN--DTSVCLQPEKLCNGKKDCPDGSDEGYL 1172
Query: 173 HPCEAW----GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNR 228
C+ G CS C V C+C G +L D N + V + +
Sbjct: 1173 --CDECSLNNGGCSNHCS-VVPGRGIVCSCPEGLQLNKD---------NKTCEIVDYCSN 1220
Query: 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNI 288
H + K+T+ Y W +D G S +++
Sbjct: 1221 H---------LKCSQVCEQHKHTVKCSCYEG-------WKLDVD---------GESCTSV 1255
Query: 289 DVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNI 348
D F AF S + I + +H + S LV +
Sbjct: 1256 DP-----------------------FEAFIIFSIRHE----IRRIDLHKRDYSLLV-PGL 1287
Query: 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408
+ +L +NQ +LYW D + + ++ S + + V + + P D
Sbjct: 1288 RNTIALDFHFNQSLLYWTDVVEDRIYRGKLSESGGVSAIEVVV---EHGLATPEGLTVD- 1343
Query: 409 LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAP 468
WI N+YW++SNLDQIEVAKL G R TLIAG ME PRAIALDPR+G+LFWTDWD+ P
Sbjct: 1344 -WIAGNIYWIDSNLDQIEVAKLDGSLRTTLIAGAMEHPRAIALDPRYGILFWTDWDANFP 1402
Query: 469 RIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH 528
RIE SMSG R I + D+ T GAWPNGLT+D+ RI W DA+SD+I++ YDG +
Sbjct: 1403 RIESASMSGAGRKTIYK-DMKT--GAWPNGLTVDHFEKRIVWTDARSDAIYSALYDGTNM 1459
Query: 529 HVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF---IY 585
++ H+ L+HPFA++L+ + VYWTDWRTN++ +ANKW G +V++IQ+T QPF IY
Sbjct: 1460 IEIIRGHEYLSHPFAVSLYGSEVYWTDWRTNTLSKANKWTGQNVSVIQKTSAQPFDLQIY 1519
Query: 586 VNGVVKKS--PCEMNNGN--CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF 641
++ PC N+G CSH+CLI N + C CPH+MKL SD KTC +F+++
Sbjct: 1520 HPSRQPQAPNPCAANDGKGPCSHMCLINHNRSAACACPHLMKLSSDKKTCYEM-KKFLLY 1578
Query: 642 SRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGG 701
+R EIRGVD+++PY++ I ++P + ++FDA+ +++YWTD +K +I
Sbjct: 1579 ARRSEIRGVDIDNPYFNFITAFTVPDIDDVTVIDFDASEERLYWTD-----IKTQTI--- 1630
Query: 702 QIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQ 761
KR+ I G ++ V+ I GLA+DW+++N++ S +
Sbjct: 1631 ------------------KRAFINGTGLETVISRDIQSIRGLAVDWVSRNLYWISSEFDE 1672
Query: 762 SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD 821
++I V L+G +T+I+ + K +A PV+GK++W++ TI MA MD
Sbjct: 1673 TQINVARLDGSLKTSIIHG-------IDKPQCLAAHPVRGKLYWTDGN----TINMANMD 1721
Query: 822 GTKRETVVSQKKYP 835
G+ + + +K P
Sbjct: 1722 GSNSKILFQNQKEP 1735
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Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis. Homo sapiens (taxid: 9606) |
| >sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/513 (39%), Positives = 290/513 (56%), Gaps = 54/513 (10%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +Q LYW D + + ++ + SF +
Sbjct: 1279 IRRIDLHKGDYSVLV-PGLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEV 1337
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + G+ WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1338 VI-----QYGLATPEGLAVDWIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAI 1392
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR G+LFWTDWD+ PRIE SMSG R + R T G WPNGLT+DY RI
Sbjct: 1393 ALDPRDGILFWTDWDASLPRIEAASMSGAGRRTVHRE---TGSGGWPNGLTVDYLEKRIL 1449
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1450 WIDARSDAIYSARYDGSGHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1509
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1510 HNVTVVQRTNTQPFDLQVYHPSRQPMAPNPCEANGGQGPCSHLCLINYNRTVSCACPHLM 1569
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL DN TC +F++++R EIRGVDL+ PYY+ I + ++P + + L++DA ++
Sbjct: 1570 KLHKDNTTC-YEFKKFLLYARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQR 1628
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSG 742
+YW+D +K R+ I G ++ VV A + + G
Sbjct: 1629 VYWSDVRTQAIK--------------------------RAFINGTGVETVVSADLPNAHG 1662
Query: 743 LAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGK 802
LA+DW+++N+F + +I V L+G ++ ++ L + + V P++GK
Sbjct: 1663 LAVDWVSRNLFWTSYDTNKKQINVARLDGSFKNAVVQG-------LEQPHGLVVHPLRGK 1715
Query: 803 MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYP 835
++W++ I MA MDG+ R + S +K P
Sbjct: 1716 LYWTDGD----NISMANMDGSNRTLLFSGQKGP 1744
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Functions as a receptor for Pseudomonas aeruginosa exotoxin A. Homo sapiens (taxid: 9606) |
| >sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/513 (39%), Positives = 289/513 (56%), Gaps = 54/513 (10%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +Q LYW D + + ++ + SF +
Sbjct: 1280 IRRIDLHKGDYSVLV-PGLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEV 1338
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + G+ WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1339 VI-----QYGLATPEGLAVDWIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAI 1393
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR G+LFWTDWD+ PRIE SMSG R I R T G WPNGLT+DY RI
Sbjct: 1394 ALDPRDGILFWTDWDASLPRIEAASMSGAGRRTIHRE---TGSGGWPNGLTVDYLEKRIL 1450
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1451 WIDARSDAIYSARYDGSGHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1510
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1511 HNVTVVQRTNTQPFDLQVYHPSRQPMAPNPCEANGGRGPCSHLCLINYNRTVSCACPHLM 1570
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL DN TC +F++++R EIRGVDL+ PYY+ I + ++P + + L++DA ++
Sbjct: 1571 KLHKDNTTC-YEFKKFLLYARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQR 1629
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSG 742
+YW+D +K R+ I G ++ VV A + + G
Sbjct: 1630 VYWSDVRTQAIK--------------------------RAFINGTGVETVVSADLPNAHG 1663
Query: 743 LAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGK 802
LA+DW+++N+F + +I V L+G ++ ++ L + + V P++GK
Sbjct: 1664 LAVDWVSRNLFWTSYDTNKKQINVARLDGSFKNAVVQG-------LEQPHGLVVHPLRGK 1716
Query: 803 MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYP 835
++W++ I MA MDG+ + S +K P
Sbjct: 1717 LYWTDGD----NISMANMDGSNHTLLFSGQKGP 1745
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Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A. Mus musculus (taxid: 10090) |
| >sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 199/513 (38%), Positives = 291/513 (56%), Gaps = 54/513 (10%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L NQ LYW D + + ++ + SF +
Sbjct: 1277 IRRIDLHRGDYSVLV-PGLRNTIALDFHLNQSSLYWTDVVEDKIYRGKLLENGALTSFEV 1335
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + G+ WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1336 VI-----QYGLATPEGLAVDWIAGNIYWVESNLDQIEVAKLDGTMRTTLLAGDIEHPRAI 1390
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR+G+LFWTDWD+ PRIE SMSG R I + T G WPNGLT+DY RI
Sbjct: 1391 ALDPRYGILFWTDWDASLPRIEAASMSGAGRRTIHKE---TGSGGWPNGLTVDYLEKRIL 1447
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1448 WIDARSDAIYSALYDGTGHIEVLRGHEYLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1507
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1508 HNVTVVQRTNTQPFDLQVYHPSRQPLAPNPCEANGGKGPCSHLCLINYNRTLSCACPHLM 1567
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL DN TC +F++++R EIRGVD+++PYY+ I + ++P + + +++DA ++
Sbjct: 1568 KLDKDNTTC-YEFKKFLLYARQMEIRGVDIDNPYYNYIISFTVPDIDNVTVVDYDAVEQR 1626
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSG 742
IYW+D +K R+ I G ++ VV A + + G
Sbjct: 1627 IYWSDVRTQTIK--------------------------RAFINGTGVETVVSADLPNAHG 1660
Query: 743 LAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGK 802
L++DW+++N+F + +I V L+G ++ ++ L K + V P+ GK
Sbjct: 1661 LSVDWVSRNLFWTSYDTNKKQINVARLDGSFKNAVIQG-------LDKPHCLVVHPLHGK 1713
Query: 803 MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYP 835
++W++ I +A MDG+ R + + ++ P
Sbjct: 1714 LYWTDGD----NISVANMDGSNRTLLFTNQRGP 1742
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Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. Gallus gallus (taxid: 9031) |
| >sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/513 (38%), Positives = 297/513 (57%), Gaps = 54/513 (10%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +NQ +LYW D + + ++ S + +
Sbjct: 1270 IRRIDLHKGDYSLLV-PGLRNTIALDFHFNQSLLYWTDVVEDRIYRGKLSESGGVSAIEV 1328
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
V + + P D WI N+YW++SNLDQIEV+KL G R TLIAG ME PRAI
Sbjct: 1329 VV---EHGLATPEGLTVD--WIAGNIYWIDSNLDQIEVSKLDGSLRATLIAGAMEHPRAI 1383
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR+G+LFWTDWD+ PRIE SMSG R I + D+ T GAWPNGLT+D+ RI
Sbjct: 1384 ALDPRYGILFWTDWDANFPRIESASMSGAGRKTIYK-DMKT--GAWPNGLTVDHFERRIV 1440
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
W DA+SD+I++ YDG + ++ H+ L+HPFA++L+ + VYWTDWRTN++ +ANKW G
Sbjct: 1441 WTDARSDAIYSAFYDGTNMIEIIRGHEYLSHPFAVSLYGSEVYWTDWRTNTLAKANKWTG 1500
Query: 570 SDVTLIQRTLTQPF---IYVNGVVKKS--PCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+V++IQ+T QPF IY ++ PC N G CSHLCLI N + C CPH+M
Sbjct: 1501 QNVSVIQKTSAQPFDLQIYHPSRQPQAPNPCAANEGRGPCSHLCLINHNRSAACACPHLM 1560
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL SD KTC +F++++R EIRGVD+++PY + I ++P + ++FDA+ ++
Sbjct: 1561 KLSSDKKTCYEM-KKFLLYARRSEIRGVDIDNPYVNFITAFTVPDIDDVAVIDFDASEER 1619
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSG 742
+YWTD +K +I R+ I G ++ V+ I G
Sbjct: 1620 LYWTD-----IKTQTIT---------------------RAFINGTGLETVISRDIQSIRG 1653
Query: 743 LAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGK 802
LA+DW+++N++ S +++I V L+G +T+I+ + K +A PV+GK
Sbjct: 1654 LAVDWVSRNLYWISSEFDETQINVARLDGSLKTSIIHG-------IDKPQCLAAHPVRGK 1706
Query: 803 MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYP 835
++W++ TI MA MDG+ + + +K P
Sbjct: 1707 LYWTDGN----TINMANMDGSNSKILFQNQKEP 1735
|
Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis. Mus musculus (taxid: 10090) |
| >sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 258/501 (51%), Gaps = 58/501 (11%)
Query: 336 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD 395
+G+ + +V ++ +++ + ++YW D ++ + SE N+ V G
Sbjct: 38 NGKENATIVVGGLEDAAAVDFVFGHGLIYWSDVSEEAIKRTEFNKSESVQ--NVVVSGLL 95
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
S G+ C W+G+ LYW +S ++IEV+ L G R+ L +++ PRAIALDP
Sbjct: 96 SPDGLA-CD-----WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 149
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
G ++WTDW + P+IER M G R VI+ ++ WPNGLTLDYQ ++YW DAK
Sbjct: 150 GFMYWTDW-GEVPKIERAGMDGSSRFVIINTEIY-----WPNGLTLDYQERKLYWADAKL 203
Query: 516 DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575
+ IH DG + V+ SL HPFA+ LFE+ +YWTDW T+S++ NK+ G + I
Sbjct: 204 NFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDTLYWTDWNTHSILACNKYTGEGLREI 261
Query: 576 QRTLTQP-----FIYVNGVVKKSPCEMNNGNCSHLCLIG-MNGTYKCQCPHVMKLMSDNK 629
+ P F +PC ++NG CSHLCL+ + Y+C CP +KLM + K
Sbjct: 262 HSNIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLMENGK 321
Query: 630 TCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQE 689
TC+ ++ ++ +R ++R + L+ P + I + + + +++D IYWTD E
Sbjct: 322 TCKDGATELLLLARRTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDE 380
Query: 690 YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIA 749
++ RS I G Q VV A I+HP G+A+DW+A
Sbjct: 381 VRAIR--------------------------RSFIDGSGSQFVVTAQIAHPDGIAVDWVA 414
Query: 750 QNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT 809
+N++ + +I V L G + ++S + L + +I + P+ G M+W++
Sbjct: 415 RNLYWTDTG--TDRIEVTRLNGTMRKILISED------LEEPRAIVLDPMVGYMYWTD-W 465
Query: 810 KQVVTIEMAFMDGTKRETVVS 830
++ IE A +DG+ R +V+
Sbjct: 466 GEIPKIERAALDGSDRVVLVN 486
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 153/501 (30%), Positives = 259/501 (51%), Gaps = 58/501 (11%)
Query: 336 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD 395
+G+ + +V ++ +++ ++ ++YW D ++ + +E N+ V G
Sbjct: 38 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLL 95
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
S G+ C W+G+ LYW +S ++IEV+ L G R+ L +++ PRAIALDP
Sbjct: 96 SPDGLA-CD-----WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 149
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
G ++WTDW + P+IER M G R +I+ ++ WPNGLTLDY+ ++YW DAK
Sbjct: 150 GFMYWTDW-GEVPKIERAGMDGSSRFIIINSEIY-----WPNGLTLDYEEQKLYWADAKL 203
Query: 516 DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575
+ IH DG + V+ SL HPFA+ LFE+ +YWTDW T+S++ NK+ G + I
Sbjct: 204 NFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 261
Query: 576 QRTLTQP-----FIYVNGVVKKSPCEMNNGNCSHLCLIG-MNGTYKCQCPHVMKLMSDNK 629
+ P F +PC ++NG CSHLCL+ + Y+C CP +KL+ + K
Sbjct: 262 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGK 321
Query: 630 TCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQE 689
TC+ ++ ++ +R ++R + L+ P + I + + + +++D IYWTD E
Sbjct: 322 TCKDGATELLLLARRTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDE 380
Query: 690 YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIA 749
++ RS I G Q VV A I+HP G+A+DW+A
Sbjct: 381 VRAIR--------------------------RSFIDGSGSQFVVTAQIAHPDGIAVDWVA 414
Query: 750 QNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT 809
+N++ + +I V L G + ++S + L + +I + P+ G M+W++
Sbjct: 415 RNLYWTDTG--TDRIEVTRLNGTMRKILISED------LEEPRAIVLDPMVGYMYWTD-W 465
Query: 810 KQVVTIEMAFMDGTKRETVVS 830
++ IE A +DG+ R +V+
Sbjct: 466 GEIPKIERAALDGSDRVVLVN 486
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 246/484 (50%), Gaps = 61/484 (12%)
Query: 353 SLVIDYN--QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410
++ IDY+ + +YW D + + +DGS N E+ D + + W
Sbjct: 375 AIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEINDPDG-IAVD--------W 425
Query: 411 IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRI 470
+ +NLYW ++ D+IEV +L+G R+ L++ D++ PRAIAL P GL++WTDW + P+I
Sbjct: 426 VARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIALHPVMGLMYWTDW-GENPKI 484
Query: 471 ERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530
E ++ G+ R V+V L WPNGL LD Q ++YW DAK+D I + DG
Sbjct: 485 ECANLDGQERRVLVNASL-----GWPNGLALDLQEGKLYWGDAKTDKIEVINVDGTKRRT 539
Query: 531 VLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQR---TLTQPFIYVN 587
+L D L H F L + +YWTDW+ S+ R +K S +I + + + V
Sbjct: 540 LL--EDKLPHIFGFTLLGDFIYWTDWQRRSIERVHKVKASRDVIIDQLPDLMGLKAVNVA 597
Query: 588 GVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREI 647
VV +PC NG CSHLC + T +C CP ++L+SD KTC V ++ F++F+ I
Sbjct: 598 KVVGTNPCADRNGGCSHLCFFTPHAT-RCGCPIGLELLSDMKTCIVPEA-FLVFTSRAAI 655
Query: 648 RGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVV 707
+ LE + I + V + L+FD +N IYWTD + R+ + G ++ VV
Sbjct: 656 HRISLE--TNNNDVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSVEHVV 713
Query: 708 DAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVC 767
EF G+ +P G+A+DW+ +N++ A + ++I V
Sbjct: 714 ----EF----------------------GLDYPEGMAVDWMGKNLYWADTG--TNRIEVA 745
Query: 768 NLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRET 827
L+G+++ ++ + L S+A+ P KG ++W+ + + AFMDGT T
Sbjct: 746 RLDGQFRQVLVWRD------LDNPRSLALDPTKGYIYWTEWGGKPRIVR-AFMDGTNCMT 798
Query: 828 VVSQ 831
+V +
Sbjct: 799 LVDK 802
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 243/484 (50%), Gaps = 61/484 (12%)
Query: 353 SLVIDYN--QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410
++ IDY+ + +YW D + + +DGS N E+ D + + W
Sbjct: 374 AIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEINDPDG-IAVD--------W 424
Query: 411 IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRI 470
+ +NLYW ++ D+IEV +L+G R+ L++ D++ PRAI L P GL++WTDW + P+I
Sbjct: 425 VARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIVLHPVMGLMYWTDW-GENPKI 483
Query: 471 ERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530
E ++ G R V+V L WPNGL LD Q ++YW DAK+D I + DG
Sbjct: 484 ECANLDGRDRHVLVNTSL-----GWPNGLALDLQEGKLYWGDAKTDKIEVINIDGTKRKT 538
Query: 531 VLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQR---TLTQPFIYVN 587
+L D L H F L + +YWTDW+ S+ R +K S +I + + + V
Sbjct: 539 LL--EDKLPHIFGFTLLGDFIYWTDWQRRSIERVHKVKASRDVIIDQLPDLMGLKAVNVA 596
Query: 588 GVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREI 647
VV +PC NG CSHLC T KC CP ++L+SD KTC + ++ F++F+ I
Sbjct: 597 KVVGTNPCADGNGGCSHLCFFTPRAT-KCGCPIGLELLSDMKTCIIPEA-FLVFTSRATI 654
Query: 648 RGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVV 707
+ LE + I + V + L+FD +N IYWTD + R+ + G ++ V+
Sbjct: 655 HRISLE--TNNNDVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSVEHVI 712
Query: 708 DAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVC 767
EF G+ +P G+A+DW+ +N++ A + ++I V
Sbjct: 713 ----EF----------------------GLDYPEGMAVDWMGKNLYWADTG--TNRIEVA 744
Query: 768 NLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRET 827
L+G+++ ++ + L S+A+ P KG ++W+ + + AFMDGT T
Sbjct: 745 RLDGQFRQVLVWRD------LDNPRSLALDPTKGYIYWTEWGGKPRIVR-AFMDGTNCMT 797
Query: 828 VVSQ 831
+V +
Sbjct: 798 LVDK 801
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin (By similarity). Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 140/488 (28%), Positives = 257/488 (52%), Gaps = 71/488 (14%)
Query: 353 SLVIDYNQDILYWCDSHLNTVESVRVDGS--ERTVSFNLEV---LGSDSRVGIPNCRPED 407
++ +D + +YW DS L+ + +DGS E ++ L+ L D+
Sbjct: 1085 AIGVDPQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDA----------- 1133
Query: 408 NLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKA 467
IG+ +YW ++ ++IEV L G R+ L+ +++SPRAI L G ++WTDW A
Sbjct: 1134 ---IGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGENA 1190
Query: 468 PRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD 527
++ER M G R+V++ +L WPNGLT+D +++ W DA ++ I +G +
Sbjct: 1191 -KLERSGMDGSDRAVLINNNL-----GWPNGLTVDKASSQLLWADAHTERIEAADLNGAN 1244
Query: 528 HHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVN 587
H ++S + HP+ + L ++++YWTDW+T S+ RA+K GS+V L++ L + +
Sbjct: 1245 RHTLVS---PVQHPYGLTLLDSYIYWTDWQTRSIHRADKGTGSNVILVRSNLPG-LMDMQ 1300
Query: 588 GVVKKSP-----CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS 642
V + P C NG CSHLCL +G + C CP ++L D KTC + +++FS
Sbjct: 1301 AVDRAQPLGFNKCGSRNGGCSHLCLPRPSG-FSCACPTGIQLKGDGKTCDPSPETYLLFS 1359
Query: 643 RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQ 702
IR + L+ HT + +P++ + +L++D+ + K+Y+TD
Sbjct: 1360 SRGSIRRISLD-TSDHTDVHVPVPELNNVISLDYDSVDGKVYYTD--------------- 1403
Query: 703 IQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQS 762
+ +D + +R+ + G ++ V+ G+ GLA+DW+A+N++ + ++
Sbjct: 1404 --VFLDVI---------RRADLNGSNMETVIGRGLKTTDGLAVDWVARNLYWTDTG--RN 1450
Query: 763 KIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG 822
I L+G + +++N +L + +IAV+P KG +FW++ + IE A +DG
Sbjct: 1451 TIEASRLDGSCRKVLINN------SLDEPRAIAVFPRKGYLFWTDW-GHIAKIERANLDG 1503
Query: 823 TKRETVVS 830
++R+ +++
Sbjct: 1504 SERKVLIN 1511
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | ||||||
| 242018517 | 4603 | low-density lipoprotein receptor, putati | 0.824 | 0.150 | 0.367 | 1e-146 | |
| 321462894 | 4592 | hypothetical protein DAPPUDRAFT_307561 [ | 0.542 | 0.099 | 0.495 | 1e-134 | |
| 270010181 | 4576 | hypothetical protein TcasGA2_TC009548 [T | 0.524 | 0.096 | 0.489 | 1e-127 | |
| 427796811 | 4696 | Putative prolow-density lipoprotein rece | 0.468 | 0.083 | 0.502 | 1e-126 | |
| 427795113 | 3609 | Putative prolow-density lipoprotein rece | 0.468 | 0.109 | 0.502 | 1e-126 | |
| 328702065 | 2150 | PREDICTED: low-density lipoprotein recep | 0.552 | 0.216 | 0.467 | 1e-125 | |
| 195024691 | 4620 | GH21081 [Drosophila grimshawi] gi|193901 | 0.819 | 0.149 | 0.359 | 1e-121 | |
| 195381779 | 4618 | GJ21697 [Drosophila virilis] gi|19414441 | 0.808 | 0.147 | 0.349 | 1e-121 | |
| 195551463 | 1857 | GD15368 [Drosophila simulans] gi|1942018 | 0.831 | 0.376 | 0.354 | 1e-121 | |
| 195332400 | 4717 | GM21016 [Drosophila sechellia] gi|194124 | 0.832 | 0.148 | 0.355 | 1e-121 |
| >gi|242018517|ref|XP_002429721.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212514727|gb|EEB16983.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 330/898 (36%), Positives = 455/898 (50%), Gaps = 205/898 (22%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
C+ + CDGD DC+DGSDE + C + + S C C+PL+ C+G DC +D
Sbjct: 852 CVPVEFVCDGDNDCRDGSDE--KSCGEICGNSSEIYCPAEGICLPLSKKCNGVIDC--SD 907
Query: 63 TSDEDHC--------------------------------------------VNDCTDWSD 78
SDE C NDC D SD
Sbjct: 908 ESDEQKCENGGDQKSKTVNRPANGFAVFCSSHEFKCWNNIECVRKNFVCDGRNDCLDGSD 967
Query: 79 ETNCTH------SGNRTISAPACEPHEFDCQ-------DVLRTCIPKALVCDGEPACFNG 125
E NCT SG I+ P P F+C+ D CI + +CD + C +G
Sbjct: 968 EKNCTEIHNCTESGTCFITPPTPTP-SFECEQPSHRLCDNGTKCIKVSQLCDNKKDCSDG 1026
Query: 126 EDE-MFCDEKQC-LRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQ 183
DE + C+E+ C S C H C N P GF+C CP+ ++LQPD TCS HPCE+WG CSQ
Sbjct: 1027 SDEGLRCEEQLCSFTSHCSHYCQNAPNGFVCYCPKGLHLQPDSTTCSESHPCESWGVCSQ 1086
Query: 184 DCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIA 243
C P N +KC C + L+PD FTCKSK + + P VIFSNRHELRGV+LR F V A
Sbjct: 1087 YCIPL--KNKHKCKCEDDHLLQPDGFTCKSK--DGAIPQVIFSNRHELRGVELRNFTVKA 1142
Query: 244 LISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLA 303
LISSLKNTIALDFY+T A+M++WTDV+DDKIY TLIG SL+NI+VVVQTGL+TAEGLA
Sbjct: 1143 LISSLKNTIALDFYHTKAADMIYWTDVVDDKIYRGTLIGGSLTNIEVVVQTGLATAEGLA 1202
Query: 304 VDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDIL 363
VDWIG+NLY W +L IE A ++G R L+ ++ P ++ +D L
Sbjct: 1203 VDWIGENLY--WVESNLDQ-------IEVAKLNGSFRKTLIAGDMDSPRAIALDPRDGYL 1253
Query: 364 YWC--DSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN 421
+W D+H +E + G+ R ++ + + PN D ++ + +YW+++
Sbjct: 1254 FWSDWDAHAPRIERCSMSGTNRKRVLRVDQITDGA---WPNGLTLD--YVLRRIYWIDAR 1308
Query: 422 LDQIEVAKLSGQFRRTLIAGD--MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH 479
D I G + +I G + P AIA+ + ++WTDW S +
Sbjct: 1309 SDSIHTTTYDGLMHKEVIRGHETLSHPFAIAIFENY--VYWTDWRSNS------------ 1354
Query: 480 RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLT 539
++R + ++G D H++ +LT
Sbjct: 1355 ---VIRAN----------------------------------KWNGSDLHII---QRTLT 1374
Query: 540 HPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNN 599
PF I + P V + SPCE NN
Sbjct: 1375 QPFDIQIL---------------------------------HPSRQPRDVNRPSPCEKNN 1401
Query: 600 GNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHT 659
G CSHLCLI +N TY C CPHVM+L SDNKTC V + + ++FSR EIRGVDL YYHT
Sbjct: 1402 GGCSHLCLININNTYTCDCPHVMRLSSDNKTCIVVNERIVLFSRANEIRGVDLTSAYYHT 1461
Query: 660 IPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLS 719
IPTI++P +P ++FDAANKKIYW D + NEVK S+++
Sbjct: 1462 IPTINVPHAITPATIDFDAANKKIYWADVQMNEVKTSNLI-------------------- 1501
Query: 720 KRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILS 779
GG + ++D+GI HP+GLAIDWI+ N+F+ S ++ I VCNL+GE+ T I
Sbjct: 1502 ------GGPAETIIDSGIEHPNGLAIDWISGNLFVTSSGAGENHISVCNLKGEFITII-- 1553
Query: 780 NESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAV 837
+ S L ++ S+++ PV G ++WS+V + IE + MDG R +VSQ+ P++
Sbjct: 1554 ----NGSNLFQVRSLSLNPVNGTLYWSSVKNDLHIIEQSRMDGFDRVILVSQRDQPSL 1607
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321462894|gb|EFX73914.1| hypothetical protein DAPPUDRAFT_307561 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 254/513 (49%), Positives = 336/513 (65%), Gaps = 57/513 (11%)
Query: 335 MHGENRSPLVTKNIQWPSSLVIDY----NQDILYWCDSHLNTVESVRVDGSERTVSFNLE 390
+H N L++ +++ +D+ D+++W D + + + G T N+E
Sbjct: 1155 LHTHNVKALISS---LKNTIALDFYHSSEADVIFWTDVVDDKIYRGTLVGGSLT---NIE 1208
Query: 391 VLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIA 450
V+ + G+ WIG+NLYWVESNLDQIEVAKL+G FRRTLIAG+MESPRAIA
Sbjct: 1209 VV---VQTGLATAEGLAVDWIGENLYWVESNLDQIEVAKLNGSFRRTLIAGNMESPRAIA 1265
Query: 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYW 510
LDPR G+LFWTDW+S PRIE CSMSG+ R V+VRVD + S GAWPNGLTLDY RIYW
Sbjct: 1266 LDPRHGILFWTDWESGHPRIESCSMSGDGRKVVVRVDAV-SDGAWPNGLTLDYGAERIYW 1324
Query: 511 IDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
IDA+SDSIHT YDG D ++ H++L+HPFAIALFENHVYWTDWRTNSVIRANKWNGS
Sbjct: 1325 IDARSDSIHTAKYDGTDPREIIRGHETLSHPFAIALFENHVYWTDWRTNSVIRANKWNGS 1384
Query: 571 DVTLIQRTLTQPF-IYVNGVVK-----KSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKL 624
DVT+IQRTLTQPF I + + K+PC NGNCSHLCL+ NGTY+C CPHVMKL
Sbjct: 1385 DVTVIQRTLTQPFDIQILHPSRQPSDFKNPCGTKNGNCSHLCLLNFNGTYRCHCPHVMKL 1444
Query: 625 MSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIY 684
D ++C + + + ++FSRP EIRGVDL++PYYH IP IS+PQV L+F ++I+
Sbjct: 1445 AEDGRSC-IRNERVLLFSRPNEIRGVDLDNPYYHIIPPISLPQVLQAVQLDFYGQERRIF 1503
Query: 685 WTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLA 744
W D + NEVKR +VG I+ V+D I +P G+A
Sbjct: 1504 WVDAQLNEVKRVGLVGSPIETVIDTA--------------------------IKNPHGMA 1537
Query: 745 IDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMF 804
IDW+++N+F + S T++ I VC+L+GEY T I+ + + ++ S+AV P +GK+F
Sbjct: 1538 IDWLSRNLFFSSSDGTRNHISVCSLDGEYVTRIIEED------VYQVRSMAVDPTQGKLF 1591
Query: 805 WSNVTK---QVVTIEMAFMDGTKRETVVSQKKY 834
WS + Q I MA MDG++R T++++ Y
Sbjct: 1592 WSETGRPQQQEHLIFMANMDGSER-TILAKLTY 1623
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270010181|gb|EFA06629.1| hypothetical protein TcasGA2_TC009548 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/503 (48%), Positives = 327/503 (65%), Gaps = 62/503 (12%)
Query: 343 LVTKNIQ-----WPSSLVIDY----NQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLG 393
LVT N++ +++ +D+ N ++++W D + + V G + N+EV+
Sbjct: 1269 LVTFNVKSFISSLKNTIALDFYYTKNANMVFWTDVIDDKIYRGTVVGGSLS---NIEVV- 1324
Query: 394 SDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDP 453
+ G+ WIG+NLYWVESNLDQIEVAKL G+FRRTL+AG+MESPRA+A+DP
Sbjct: 1325 --VQTGLSTAEGLAVDWIGENLYWVESNLDQIEVAKLDGRFRRTLVAGEMESPRAVAVDP 1382
Query: 454 RFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513
R G LFWTDWD+ APRIERCS++G R ++VRVD + G WPNGLTLDY L RIYWIDA
Sbjct: 1383 RDGYLFWTDWDNNAPRIERCSLAGLDREIVVRVDKIADAG-WPNGLTLDYVLRRIYWIDA 1441
Query: 514 KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVT 573
+SDSIHT YDG +HH V+ NH++L+HPFAIALFEN+VYWTDWRTNSV+RANK+ G DV
Sbjct: 1442 RSDSIHTTKYDGSEHHEVMRNHETLSHPFAIALFENYVYWTDWRTNSVVRANKFTGGDVA 1501
Query: 574 LIQRTLTQPF-IYVNGVVKK-----SPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSD 627
+IQRTLTQPF I + ++ +PC +NNG CSHLCL+ N TY+C CPHVM+L +D
Sbjct: 1502 VIQRTLTQPFDIQIMHPARQPRDGPNPCGVNNGGCSHLCLLHTNRTYRCDCPHVMRLSAD 1561
Query: 628 NKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTD 687
NKTC V + + ++ +R EIRGVD+ PYYHTIPTIS PQV +P L + A N +YW D
Sbjct: 1562 NKTC-VVNERVLLIARTSEIRGVDILQPYYHTIPTISAPQVLNPVQLEYLARNNTLYWAD 1620
Query: 688 QEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDW 747
+ +E+KR S + G IQ ++D G+ +PSGLAIDW
Sbjct: 1621 SQISEIKR--------------------------SGLTTGPIQTLIDTGLKNPSGLAIDW 1654
Query: 748 IAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSN 807
++ MF VSSP I V NL+ E+ TTI+ N + + S+A P G++FW
Sbjct: 1655 LSNLMF--VSSP--QGITVSNLDAEFITTIIDNLN--------VLSVAAHPRLGQLFWIA 1702
Query: 808 VTKQVVTIEMAFMDGTKRETVVS 830
T + IE + MDG+KR +V+
Sbjct: 1703 TTNETF-IETSAMDGSKRTKIVT 1724
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427796811|gb|JAA63857.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/440 (50%), Positives = 290/440 (65%), Gaps = 46/440 (10%)
Query: 410 WIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPR 469
WIG+NLYWVESNLDQIEVAKL+G FRRTL+AG+MESPRAI LDPR+GL+FWTDWD +APR
Sbjct: 1419 WIGENLYWVESNLDQIEVAKLNGSFRRTLVAGNMESPRAIVLDPRYGLMFWTDWDKEAPR 1478
Query: 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHH 529
IE+ SMSG+ R V++R+D +T GAWPNGLTLD+ RIYWIDA+SDS+HT YDG D+H
Sbjct: 1479 IEQASMSGDGRRVVLRIDEVTQGGAWPNGLTLDFVALRIYWIDARSDSVHTSRYDGSDYH 1538
Query: 530 VVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYV-- 586
+L H++L+HPFAI LF N+VYWTDWRTNSVIR NKWNGSDV ++Q+ QPF I V
Sbjct: 1539 EILRGHETLSHPFAITLFGNYVYWTDWRTNSVIRCNKWNGSDVQIVQKAAIQPFDIQVFH 1598
Query: 587 -------NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFI 639
NG K+ C NNG CSHLCL+ N TYKC CPH+M+L D +TC + + +
Sbjct: 1599 PSRQPKGNG---KNGCAANNGGCSHLCLLSFNNTYKCNCPHLMRLGDDGRTCHSME-RVL 1654
Query: 640 IFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIV 699
+FSRP EIRGVDL+ PYYH IP S P+V L+FD+ + IYW+D NE+KR+S++
Sbjct: 1655 LFSRPNEIRGVDLDMPYYHVIPPFSSPKVIHAVKLDFDSKRRMIYWSDTHLNEIKRASLL 1714
Query: 700 GGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP 759
G ++ ++D V E +P G A+DWI++NMF
Sbjct: 1715 GSAVETIIDTVIE--------------------------NPYGFAVDWISRNMFFTSYGE 1748
Query: 760 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF 819
I C+L+GEY ++I+ + L S+AV P G + W++ I++A
Sbjct: 1749 AGKHIFACSLDGEYVSSIID------TNLDSPGSLAVHPTLGLIMWTDHGSPHERIQVAK 1802
Query: 820 MDGTKRETVVSQKKYPAVTG 839
MDG+ R+T+ S+ P + G
Sbjct: 1803 MDGSARKTLTSRLDNPKLEG 1822
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427795113|gb|JAA63008.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/440 (50%), Positives = 290/440 (65%), Gaps = 46/440 (10%)
Query: 410 WIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPR 469
WIG+NLYWVESNLDQIEVAKL+G FRRTL+AG+MESPRAI LDPR+GL+FWTDWD +APR
Sbjct: 332 WIGENLYWVESNLDQIEVAKLNGSFRRTLVAGNMESPRAIVLDPRYGLMFWTDWDKEAPR 391
Query: 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHH 529
IE+ SMSG+ R V++R+D +T GAWPNGLTLD+ RIYWIDA+SDS+HT YDG D+H
Sbjct: 392 IEQASMSGDGRRVVLRIDEVTQGGAWPNGLTLDFVALRIYWIDARSDSVHTSRYDGSDYH 451
Query: 530 VVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYV-- 586
+L H++L+HPFAI LF N+VYWTDWRTNSVIR NKWNGSDV ++Q+ QPF I V
Sbjct: 452 EILRGHETLSHPFAITLFGNYVYWTDWRTNSVIRCNKWNGSDVQIVQKAAIQPFDIQVFH 511
Query: 587 -------NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFI 639
NG K+ C NNG CSHLCL+ N TYKC CPH+M+L D +TC + + +
Sbjct: 512 PSRQPKGNG---KNGCAANNGGCSHLCLLSFNNTYKCNCPHLMRLGDDGRTCHSME-RVL 567
Query: 640 IFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIV 699
+FSRP EIRGVDL+ PYYH IP S P+V L+FD+ + IYW+D NE+KR+S++
Sbjct: 568 LFSRPNEIRGVDLDMPYYHVIPPFSSPKVIHAVKLDFDSKRRMIYWSDTHLNEIKRASLL 627
Query: 700 GGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP 759
G ++ ++D V E +P G A+DWI++NMF
Sbjct: 628 GSAVETIIDTVIE--------------------------NPYGFAVDWISRNMFFTSYGE 661
Query: 760 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF 819
I C+L+GEY ++I+ + L S+AV P G + W++ I++A
Sbjct: 662 AGKHIFACSLDGEYVSSIID------TNLDSPGSLAVHPTLGLIMWTDHGSPHERIQVAK 715
Query: 820 MDGTKRETVVSQKKYPAVTG 839
MDG+ R+T+ S+ P + G
Sbjct: 716 MDGSARKTLTSRLDNPKLEG 735
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328702065|ref|XP_001946912.2| PREDICTED: low-density lipoprotein receptor-related protein 1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/530 (46%), Positives = 338/530 (63%), Gaps = 65/530 (12%)
Query: 343 LVTKNIQ-----WPSSLVIDY-----NQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL 392
LVT+N++ +++ +D+ D LYW D + + ++ G + ++EV+
Sbjct: 1299 LVTRNVKSLISHLKNTVTLDFYHAKDGTDTLYWTDVMDDKIFKGKIIGGSLS---DIEVV 1355
Query: 393 GSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALD 452
+ G+ W+ N+YWVESNLDQIEVAKL+G +RRTLIAGDMESPRAIALD
Sbjct: 1356 ---VQSGLTTAEGLAVDWVAGNIYWVESNLDQIEVAKLNGSYRRTLIAGDMESPRAIALD 1412
Query: 453 PRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWID 512
PR+G LFWTDWDS APRIERCSM+GE R IV V + S G WPNGLTLDY+L RIYWID
Sbjct: 1413 PRYGYLFWTDWDSSAPRIERCSMAGEFRQTIVLVSMF-SDGEWPNGLTLDYELNRIYWID 1471
Query: 513 AKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDV 572
AKSD+IHTV Y+G +HH+VL H+ L+H FAI LFEN VYWTDWR+NSV +ANKW G +V
Sbjct: 1472 AKSDTIHTVDYNGNNHHLVLKGHELLSHSFAITLFENDVYWTDWRSNSVNKANKWTGLNV 1531
Query: 573 TLIQRTLTQPF-IYV-----NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMS 626
T++Q T+TQPF I + V+ +PC NNGNCSHLCL+ +N YKC CPHVM+L
Sbjct: 1532 TVVQHTVTQPFDIKILHPSRQPKVEFNPCGTNNGNCSHLCLLNINSKYKCDCPHVMQLSK 1591
Query: 627 DNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISI--PQVFSPNNLNFDAANKKIY 684
DN TC + + ++F++ EIRGV+LE PYY+TIPT+ Q +++ AA+KKIY
Sbjct: 1592 DNHTC-IENEIVLLFAQLNEIRGVNLEQPYYNTIPTLLSYDSQALLHVQIDYLAADKKIY 1650
Query: 685 WTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLA 744
W+D NE+KRS++ G G I++++D GI P G A
Sbjct: 1651 WSDYSSNEIKRSNLSG--------------------------GNIEVILDTGIHQPHGFA 1684
Query: 745 IDWIAQNMFIAVSSP----TQSK------IVVCNLEGEYQTTILSNE--SNDTSTLSKIS 792
IDW+++NMFIAVSS T+ K I+ CNL+GEY TTI S++ DT+ +I
Sbjct: 1685 IDWMSKNMFIAVSSDQNPLTEEKISGARTIIACNLDGEYFTTIYSSDWTDEDTNKTLQIG 1744
Query: 793 SIAVWPVKGKMFWSN-VTKQVVTIEMAFMDGTKRETVVSQKKYPAVTGVS 841
++AV P +GK+FW+ ++ I M+ M+ + + ++K P V+G +
Sbjct: 1745 ALAVHPQQGKLFWTQGMSSGHHNIIMSNMNASSYSIIYTEKIIPFVSGFT 1794
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195024691|ref|XP_001985922.1| GH21081 [Drosophila grimshawi] gi|193901922|gb|EDW00789.1| GH21081 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 324/902 (35%), Positives = 447/902 (49%), Gaps = 213/902 (23%)
Query: 3 CIIAYWKCDGDEDC--KDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGL 60
CI W DG DC DGSDE ++ KC E F C RC + CDG +CG
Sbjct: 954 CIQLTWVNDGVVDCGPDDGSDESSDVFFGSKCPE--FDCGNG-RCRQFSDICDGLDNCGN 1010
Query: 61 NDTSDEDHC-------------------------VNDCTDWSDETNC--THSGNRTISA- 92
N +DE C VNDC D+SDE NC T S N+ ++
Sbjct: 1011 N--ADEFACEHECGHGERYCRPIGCYGDMYICDGVNDCEDFSDEANCNETKSDNKPLTGW 1068
Query: 93 ---PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDE---------------- 133
C P EF C D CIP+ L CDG CF+ DE+ C +
Sbjct: 1069 KELGECAPFEFACADPFE-CIPEFLRCDGINHCFDKTDEVNCTKLNPTKFDMNETVICEE 1127
Query: 134 --------KQCLR----SDCHHDCYNTP-EGFMCVCPRDMYLQPDLITCSYLHPCEAWGT 180
+C+ D H+DC +T EGF+C D + C+
Sbjct: 1128 PDRLCGFSNKCITVSQLCDGHNDCEDTTDEGFLCA---------DKL-------CDQGHE 1171
Query: 181 CSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKN---DSSPFVIFSNRHELRGVDLR 237
CS +C + Y C+C L+P+ C + D+ V +N L
Sbjct: 1172 CSHNCHNTPE--GYICSCPPHLYLQPNGKRCSMQHACEHWDTCAQVCENNGKSYACQCLE 1229
Query: 238 TFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIG-----NSLSNIDVVV 292
+++ + K+T P V +T+ D + N +G +SL NI
Sbjct: 1230 GYDLSYDKFTCKST-------APDEPYVIFTNRQDIRGINLKTLGASSFYSSLRNI---- 1278
Query: 293 QTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPS 352
+A+D++ N +W+ + D I + + GE+ +N++
Sbjct: 1279 ---------IALDFLYSNESSVEIYWT----DVIDDKIYRGHLVGES-----LRNVE--- 1317
Query: 353 SLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
++V S L+T E + VD WIG
Sbjct: 1318 AVV-----------HSGLSTTEGLAVD------------------------------WIG 1336
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER 472
KNLYW++SNLDQIEVA+L+G FRRTLIAG+MESPRAIALDPR GLLFWTDWD +PRIER
Sbjct: 1337 KNLYWIDSNLDQIEVAQLNGSFRRTLIAGNMESPRAIALDPREGLLFWTDWDDNSPRIER 1396
Query: 473 CSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVL 532
CSMSGE R +I L++ WPNGLTLDY R+YW+DAKSDSI + YDG +HHVVL
Sbjct: 1397 CSMSGEGRRLISTNWQLSA--GWPNGLTLDYTQKRVYWVDAKSDSISSTKYDGSEHHVVL 1454
Query: 533 SNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYVNGVVK 591
N + L+HPFAI++FEN+VYWTDWRT SVIRANKWNGSD+ ++QRT TQPF I V +
Sbjct: 1455 RNMEMLSHPFAISVFENYVYWTDWRTTSVIRANKWNGSDIQVLQRTQTQPFGIQVLHSSR 1514
Query: 592 ----KSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKL-MSDNKTCQVADSQFIIFSRPRE 646
++PC NNG CSHLCL+ GT+KC+CPHVM+L +D ++C V + Q ++F E
Sbjct: 1515 QPWDRNPCGDNNGGCSHLCLLSGRGTFKCECPHVMRLDPADERSC-VPNEQVLLFVMGEE 1573
Query: 647 IRGVDLEHPYYHTIPTI-SIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQL 705
IRG+DL P +HTIPTI P++ +P ++F + IYW+D + NE+ R+ I G I+
Sbjct: 1574 IRGIDLHQPNHHTIPTIRQSPRLVAPQRIDFLVEDSYIYWSDIQQNEISRAGISSGLIEP 1633
Query: 706 VVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIV 765
+++ I P G AIDWIA++M+ + S I+
Sbjct: 1634 IINT--------------------------NIEKPYGFAIDWIARHMYFS-SGQIVCTIL 1666
Query: 766 VCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT--KQVVTIEMAFMDGT 823
L+GE+ T I N L+ + SIA+ P GKM+W + T + +E + +DG+
Sbjct: 1667 ASTLQGEFTTHIHEN-------LNMVDSIALDPANGKMYWIHSTHDSSLWQLEQSNLDGS 1719
Query: 824 KR 825
+R
Sbjct: 1720 ER 1721
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195381779|ref|XP_002049622.1| GJ21697 [Drosophila virilis] gi|194144419|gb|EDW60815.1| GJ21697 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 325/931 (34%), Positives = 443/931 (47%), Gaps = 251/931 (26%)
Query: 16 CKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWA------------------------ 51
C DGSD+L +C+ C+ + FTC ++ RCI L W
Sbjct: 924 CSDGSDQL--NCEHNTCNSNEFTCEKSGRCIQLTWVNDGVIDCGPDDSSDESLDLYSGSK 981
Query: 52 -----------------CDGQPDCGLNDTSDEDHC------------------------- 69
CDG +CG N +DE C
Sbjct: 982 CPEFDCGNGRCRQFSDICDGLDNCGNN--ADEAACEHECGHGERYCRPIGCYGDMHICDG 1039
Query: 70 VNDCTDWSDETNC--THSGNRTISA----PACEPHEFDCQDVLRTCIPKALVCDGEPACF 123
VNDC D+SDE NC T S N +S C EF C D CIP+ L CDG C+
Sbjct: 1040 VNDCEDFSDEANCNQTKSDNHPLSGWKELGECATFEFACADPFE-CIPEFLRCDGINHCY 1098
Query: 124 NGEDEMFCDEKQCLRSD------CHH----------------------DCYNTP-EGFMC 154
+ DE+ C + D C H DC +T EGF+C
Sbjct: 1099 DKTDELNCTHIHPTKFDMNETVICEHPDRLCGFSNKCITVSQLCDGNNDCEDTTDEGFLC 1158
Query: 155 VCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214
D + CE CS +C + Y C+C L+P+ C +
Sbjct: 1159 A---------DEL-------CEQGHECSHNCHNTPE--GYICSCPPHLYLQPNGKRCSMQ 1200
Query: 215 SKN---DSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVI 271
D+ V +N L +++ + K+T P V +T+
Sbjct: 1201 HACEHWDTCSQVCENNGKGYACQCLEGYDLAYDKFTCKST-------APDEPYVIFTNRQ 1253
Query: 272 DDKIYNATLIG-----NSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSS 326
D + N +G +SL NI +A+D++ N FW+ +
Sbjct: 1254 DIRGINLKTLGASSFYSSLRNI-------------IALDFLYSNESSVDIFWT----DVI 1296
Query: 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVS 386
D I + + GE+ +N++ ++V S L+T E + VD
Sbjct: 1297 DDKIYRGQLVGES-----LRNVE---AVV-----------HSGLSTTEGLAVD------- 1330
Query: 387 FNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESP 446
WIGKNLYW++SNLDQIEVAKL+G FRRTLIAG+MESP
Sbjct: 1331 -----------------------WIGKNLYWIDSNLDQIEVAKLNGSFRRTLIAGNMESP 1367
Query: 447 RAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLT 506
RAIALDPR GLLFWTDWD +PRIERCSM+GE R +I L++ WPNGLTLDY
Sbjct: 1368 RAIALDPREGLLFWTDWDDNSPRIERCSMAGEGRRIISTSWQLSA--GWPNGLTLDYTQK 1425
Query: 507 RIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANK 566
R+YW+DAKSDSI + YDG +HHVVL N + L+HPFAI++FEN+VYWTDWRT SVIRANK
Sbjct: 1426 RVYWVDAKSDSISSTKYDGSEHHVVLRNKEILSHPFAISVFENYVYWTDWRTTSVIRANK 1485
Query: 567 WNGSDVTLIQRTLTQPF-IYVNGVVK----KSPCEMNNGNCSHLCLIGMNGTYKCQCPHV 621
WNGSDV ++QRT TQPF I V + ++PC NNG CSHLCL+ GTYKC+CPHV
Sbjct: 1486 WNGSDVQVLQRTQTQPFGIQVLHSSRQPWDRNPCGDNNGGCSHLCLLSGRGTYKCECPHV 1545
Query: 622 MKL-MSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTI-SIPQVFSPNNLNFDAA 679
M+L +D + C V + Q ++F EIRG+DL P +HTIPTI P++ +P ++F
Sbjct: 1546 MRLDPADERNC-VPNEQVLLFVMGEEIRGIDLLQPNHHTIPTIRQSPRLVAPQRIDFLVE 1604
Query: 680 NKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISH 739
+ IYW+D + NE+ ++ I G I+ +++ I
Sbjct: 1605 DSHIYWSDIQQNEI--------------------------SKAGISNGLIEPIINTNIEK 1638
Query: 740 PSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPV 799
P G AIDWIA++M+ + S I+ NL+GEY T I N L+ + SIA+ P
Sbjct: 1639 PYGFAIDWIAKHMYFS-SGQNVGTILASNLKGEYTTHIHEN-------LNMVDSIALDPA 1690
Query: 800 KGKMFWSNVTKQVV--TIEMAFMDGTKRETV 828
GKM+W + T +E + +DG++R +
Sbjct: 1691 NGKMYWIHSTHDSTLWQLEQSNLDGSERMVI 1721
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195551463|ref|XP_002076234.1| GD15368 [Drosophila simulans] gi|194201883|gb|EDX15459.1| GD15368 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 321/906 (35%), Positives = 436/906 (48%), Gaps = 207/906 (22%)
Query: 3 CIIAYWKCDGDEDC--KDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGL 60
CI W DG DC D SDE +E KC E F CN RC A CDG +CG
Sbjct: 792 CIQLTWVNDGVVDCGPDDDSDETSETIFASKCPE--FDCNNG-RCRQFADVCDGIDNCGN 848
Query: 61 NDTSDEDHC-------------------------VNDCTDWSDETNC--THSGNRTISA- 92
N +DE C ++DC D+SDE NC T S N ++
Sbjct: 849 N--ADEMECEQECEHGEKYCRPIGCYGEMHMCDGIHDCVDFSDEANCNQTKSDNHPVTGW 906
Query: 93 ---PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDE---------------- 133
C P EF C D CIP L CDG P CF+ DE C
Sbjct: 907 KELGECAPLEFACMDPFE-CIPDFLRCDGIPHCFDKTDEFNCTHINTSRFDMNETVICEH 965
Query: 134 --------KQCLR----SDCHHDCYNTP-EGFMCVCPRDMYLQPDLITCSYLHPCEAWGT 180
KQC+ D +DC +T EGF+C D + C+
Sbjct: 966 PDRLCGFTKQCVTVDQLCDGKNDCEDTTDEGFLCA---------DKL-------CDRGHE 1009
Query: 181 CSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFN 240
CS C + Y C+C L+P+ C + D +G D R +
Sbjct: 1010 CSHRCHNTPE--GYICSCPDHLYLQPNGKRCSMQHACDHWDTCSQVCESSGKGYDCRCLD 1067
Query: 241 VIALISSLKNTIALDFYY----TPTANMVFWTDVIDDKIYN-ATL-IGNSLSNIDVVVQT 294
L D + P V +T+ D K N TL +GN S++ ++
Sbjct: 1068 GFDL--------GFDRFTCKSTAPDEPYVIFTNRQDIKGINLKTLNVGNFYSSLRNII-- 1117
Query: 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSL 354
A+D++ N +W+ + D I + + GE+ +N++
Sbjct: 1118 --------ALDFLYNNESNVEIYWT----DVIDDKIYRGHLVGES-----LRNVE----A 1156
Query: 355 VIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKN 414
VI S L+T E + VD W+GKN
Sbjct: 1157 VIH----------SGLSTTEGLAVD------------------------------WVGKN 1176
Query: 415 LYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS 474
LYW++SNLDQIEVAKL+G FRRTLIAG+MESPRAIALDPR GLLFWTDWD +PRIER S
Sbjct: 1177 LYWIDSNLDQIEVAKLNGSFRRTLIAGNMESPRAIALDPREGLLFWTDWDDNSPRIERAS 1236
Query: 475 MSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN 534
MSG+ R +I L++ WPNGLTLDY R+YW+DAKSDSI + YDG +HHVVL N
Sbjct: 1237 MSGDGRRMISTSWQLSA--GWPNGLTLDYTQKRVYWVDAKSDSISSTMYDGSEHHVVLRN 1294
Query: 535 HDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYVNGVVK-- 591
+ L+HPFAI++FEN+VYWTDWRT SVIRANKWNGSDV ++QRT +QPF I V +
Sbjct: 1295 KEILSHPFAISVFENYVYWTDWRTTSVIRANKWNGSDVQVLQRTQSQPFGIQVLHSSRQP 1354
Query: 592 --KSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRG 649
++PC NNG CSHLCL+ GT+KC+CPHVM+L N+ V + Q ++F EIRG
Sbjct: 1355 WDRNPCGENNGGCSHLCLLSGRGTFKCECPHVMRLDPANERNCVPNEQVLLFVMVDEIRG 1414
Query: 650 VDLEHPYYHTIPTI-SIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVD 708
+DL P +HTIPTI P++ +P ++F +I+W+D + NE+ + I G I+ +++
Sbjct: 1415 IDLHQPNHHTIPTIRQSPRLVAPQRIDFLVDESRIFWSDIQQNEISSAGISNGLIEPIIN 1474
Query: 709 AVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCN 768
I P G A+DWIA+NM+ + S + I+ N
Sbjct: 1475 T--------------------------NIEKPYGFAVDWIARNMYFS-SGQIKCNILASN 1507
Query: 769 LEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFW--SNVTKQVVTIEMAFMDGTKRE 826
L+GE+ + I + L+ + SI + P GKM+W S + +E + +DG+ R
Sbjct: 1508 LKGEFVSIIHED-------LNMVDSIVLDPANGKMYWIHSASDGSMSQLEQSNLDGSSRS 1560
Query: 827 TVVSQK 832
+ +
Sbjct: 1561 LIYQHE 1566
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195332400|ref|XP_002032886.1| GM21016 [Drosophila sechellia] gi|194124856|gb|EDW46899.1| GM21016 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 322/905 (35%), Positives = 440/905 (48%), Gaps = 205/905 (22%)
Query: 3 CIIAYWKCDGDEDC--KDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGL 60
CI W DG DC D SDE++E KC E F CN RC A CDG +CG
Sbjct: 1024 CIQLTWVNDGVVDCGPDDDSDEMSETIFASKCPE--FDCNNG-RCRQFADVCDGIDNCGN 1080
Query: 61 NDTSDEDHC-------------------------VNDCTDWSDETNC--THSGNRTISA- 92
N +DE C ++DC D+SDE NC T S N ++
Sbjct: 1081 N--ADEMECEQECEHGEKYCRPIGCYGEMHMCDGIHDCVDFSDEANCNQTKSDNHPVTGW 1138
Query: 93 ---PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDE---------------- 133
C P EF C D CIP L CDG P CF+ DE+ C
Sbjct: 1139 KELGECAPLEFACMDPFE-CIPDFLRCDGIPHCFDKTDELNCSHINTSRFDMNETVICEH 1197
Query: 134 --------KQCLR----SDCHHDCYNTP-EGFMCVCPRDMYLQPDLITCSYLHPCEAWGT 180
KQC+ D +DC +T EGF+C D + C+
Sbjct: 1198 PDRLCGFSKQCVTVDQLCDGKNDCEDTTDEGFLCA---------DKL-------CDRGHE 1241
Query: 181 CSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFN 240
CS C + Y C+C L+P+ C + D +G D R +
Sbjct: 1242 CSHRCHNTPE--GYICSCPDHLYLQPNGKRCSMQHACDHWDTCSQVCESSGKGYDCRCLD 1299
Query: 241 VIAL---ISSLKNTIALDFYYTPTANMVFWTDVIDDKIYN-ATL-IGNSLSNIDVVVQTG 295
L + K+T P V +T+ D K N TL +GN S++ ++
Sbjct: 1300 GFDLGFDRFTCKST-------APDEPYVIFTNRQDIKGINLKTLNVGNFYSSLRNII--- 1349
Query: 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLV 355
A+D++ N +W+ + D I + + GE+ +N++ V
Sbjct: 1350 -------ALDFLYNNESNVEIYWT----DVIDDKIYRGHLVGES-----LRNVE----AV 1389
Query: 356 IDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNL 415
I S L+T E + VD W+GKNL
Sbjct: 1390 IH----------SGLSTTEGLAVD------------------------------WVGKNL 1409
Query: 416 YWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM 475
YW++SNLDQIEVAKL+G FRRTLIAG+MESPRAIALDPR GLLFWTDWD +PRIER SM
Sbjct: 1410 YWIDSNLDQIEVAKLNGSFRRTLIAGNMESPRAIALDPREGLLFWTDWDDNSPRIERASM 1469
Query: 476 SGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH 535
SG+ R +I L++ WPNGLTLDY R+YW+DAKSDSI + YDG +HHVVL N
Sbjct: 1470 SGDGRRMISTSWQLSA--GWPNGLTLDYTQKRVYWVDAKSDSISSTMYDGSEHHVVLRNK 1527
Query: 536 DSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYVNGVVK--- 591
+ L+HPFAI++FEN+VYWTDWRT SVIRANKWNGSDV ++QRT +QPF I V +
Sbjct: 1528 EILSHPFAISVFENYVYWTDWRTTSVIRANKWNGSDVQVLQRTQSQPFGIQVLHSSRQPW 1587
Query: 592 -KSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGV 650
++PC NNG CSHLCL+ GT+KC+CPHVM+L N+ V + Q ++F EIRG+
Sbjct: 1588 DRNPCGENNGGCSHLCLLSGRGTFKCECPHVMRLDPANERNCVPNEQVLLFVMVDEIRGI 1647
Query: 651 DLEHPYYHTIPTI-SIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDA 709
DL P +HTIPTI P++ +P ++F +I+W+D + NE+
Sbjct: 1648 DLHQPNHHTIPTIRQSPRLVAPQRIDFLVDESRIFWSDIQQNEI---------------- 1691
Query: 710 VFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL 769
+ I G I+ +++ I P G A+DWIA+NM+ + S + I+ NL
Sbjct: 1692 ----------SSAGISNGLIEPIINTNIEKPYGFAVDWIARNMYFS-SGQIKCNILASNL 1740
Query: 770 EGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFW--SNVTKQVVTIEMAFMDGTKRET 827
+GE+ + I + L+ + SI + P GKM+W S + +E + +DG+ R
Sbjct: 1741 KGEFVSIIHED-------LNMVDSIVLDPTNGKMYWIHSASDGSMSQLEQSNLDGSSRSL 1793
Query: 828 VVSQK 832
+ +
Sbjct: 1794 IYQHE 1798
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | ||||||
| FB|FBgn0053087 | 4699 | LRP1 "LDL receptor protein 1" | 0.374 | 0.067 | 0.551 | 3.4e-133 | |
| UNIPROTKB|E1BGJ0 | 4544 | LRP1 "Uncharacterized protein" | 0.351 | 0.065 | 0.527 | 3.8e-132 | |
| UNIPROTKB|J9P315 | 4544 | LRP1 "Uncharacterized protein" | 0.439 | 0.081 | 0.457 | 4.8e-120 | |
| UNIPROTKB|F1PPZ1 | 4436 | LRP1B "Uncharacterized protein | 0.437 | 0.082 | 0.433 | 1.9e-117 | |
| UNIPROTKB|P98157 | 4543 | LRP1 "Low-density lipoprotein | 0.439 | 0.081 | 0.454 | 2.5e-116 | |
| MGI|MGI:96828 | 4545 | Lrp1 "low density lipoprotein | 0.439 | 0.081 | 0.457 | 3.9e-115 | |
| UNIPROTKB|Q9NZR2 | 4599 | LRP1B "Low-density lipoprotein | 0.437 | 0.080 | 0.433 | 1.5e-114 | |
| UNIPROTKB|E2R4Q1 | 4528 | LRP1 "Uncharacterized protein" | 0.565 | 0.105 | 0.387 | 2.2e-114 | |
| UNIPROTKB|G3V928 | 4545 | Lrp1 "Protein Lrp1" [Rattus no | 0.439 | 0.081 | 0.457 | 2.4e-114 | |
| UNIPROTKB|Q07954 | 4544 | LRP1 "Prolow-density lipoprote | 0.439 | 0.081 | 0.454 | 4.8e-114 |
| FB|FBgn0053087 LRP1 "LDL receptor protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 3.4e-133, Sum P(4) = 3.4e-133
Identities = 182/330 (55%), Positives = 232/330 (70%)
Query: 410 WIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPR 469
W+GKNLYW++SNLDQIEVAKL+G FRRTLIAG+MESPRAIALDPR GLLFWTDWD +PR
Sbjct: 1403 WVGKNLYWIDSNLDQIEVAKLNGSFRRTLIAGNMESPRAIALDPREGLLFWTDWDDNSPR 1462
Query: 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHH 529
IER SMSG+ R +I S G WPNGLTLDY R+YW+DAKSDSI + YDG +HH
Sbjct: 1463 IERASMSGDGRRMI-STSWQLSAG-WPNGLTLDYTQKRVYWVDAKSDSISSTMYDGSEHH 1520
Query: 530 VVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYVNG 588
VVL N + L+HPFAI++FEN+VYWTDWRT SVIRANKWNGSDV ++QRT +QPF I V
Sbjct: 1521 VVLRNKEILSHPFAISVFENYVYWTDWRTTSVIRANKWNGSDVQVLQRTQSQPFGIQVLH 1580
Query: 589 VVK----KSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRP 644
+ ++PC NNG CSHLCL+ GT+KC+CPHVM+L N+ V + Q ++F
Sbjct: 1581 SSRQPWDRNPCGENNGGCSHLCLLSGRGTFKCECPHVMRLDPANERNCVPNEQVLLFVMV 1640
Query: 645 REIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQ 704
EIRG+DL P +HTIPTI Q SP ++F +I+W+D + NE+ + I G I+
Sbjct: 1641 DEIRGIDLHQPNHHTIPTIR--Q--SPRRIDFLVDESRIFWSDIQQNEISSAGISNGLIE 1696
Query: 705 LVVDAVFE----FYLTPLSKRSSIVGGQIQ 730
+++ E F + +++ GQI+
Sbjct: 1697 PIINTNIEKPYGFAVDWIARNMYFSSGQIK 1726
|
|
| UNIPROTKB|E1BGJ0 LRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 3.8e-132, Sum P(3) = 3.8e-132
Identities = 162/307 (52%), Positives = 208/307 (67%)
Query: 410 WIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPR 469
WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAIALDPR G+LFWTDWD+ PR
Sbjct: 1352 WIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAIALDPRDGILFWTDWDASLPR 1411
Query: 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHH 529
IE SMSG R I R T G WPNGLT+DY RI WIDA+SD+I++ YDG H
Sbjct: 1412 IEAASMSGAGRRTIHRE---TGSGGWPNGLTVDYLEKRILWIDARSDAIYSARYDGSGHM 1468
Query: 530 VVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF---IY- 585
VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G +VT++QRT TQPF +Y
Sbjct: 1469 EVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTGHNVTVVQRTNTQPFDLQVYH 1528
Query: 586 -VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS 642
+ +PCE N G CSHLCLI N T C CPH+MKL DN TC +F++++
Sbjct: 1529 PSRQPMAPNPCEANGGRGPCSHLCLIDYNRTVSCACPHLMKLHKDNTTCYEF-KKFLLYA 1587
Query: 643 RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQ 702
R EIRGVDL+ PYY+ I + ++P + + L++DA +++YW+D +KR+ I G
Sbjct: 1588 RQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQRVYWSDVRTQAIKRAFINGTG 1647
Query: 703 IQLVVDA 709
++ VV A
Sbjct: 1648 VETVVSA 1654
|
|
| UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 868 (310.6 bits), Expect = 4.8e-120, Sum P(3) = 4.8e-120
Identities = 177/387 (45%), Positives = 238/387 (61%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +Q LYW D + + ++ + SF +
Sbjct: 1279 IRRIDLHKGDYSVLVP-GLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEV 1337
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + P D WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1338 VI---QYGLATPEGLAVD--WIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAI 1392
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR G+LFWTDWD+ PRIE SMSG R I R T G WPNGLT+DY RI
Sbjct: 1393 ALDPRDGILFWTDWDASLPRIEAASMSGAGRRTIHRE---TGSGGWPNGLTVDYLEKRIL 1449
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1450 WIDARSDAIYSARYDGSGHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1509
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1510 HNVTVVQRTNTQPFDLQVYHPSRQPMAPNPCEANGGRGPCSHLCLINYNRTVSCACPHLM 1569
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL DN TC +F++++R EIRGVDL+ PYY+ I + ++P + + L++DA ++
Sbjct: 1570 KLHKDNTTCYEF-KKFLLYARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAHEQR 1628
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDA 709
+YW+D +KR+ I G ++ VV A
Sbjct: 1629 VYWSDVRTQAIKRAFINGTGVETVVSA 1655
|
|
| UNIPROTKB|F1PPZ1 LRP1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.9e-117, Sum P(3) = 1.9e-117
Identities = 167/385 (43%), Positives = 243/385 (63%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +NQ +LYW D + + ++ S + +
Sbjct: 1107 IRRIDLHKRDYSLLVP-GLRNTIALDFHFNQSLLYWTDVVEDRIYRGKLSESGGVSAIEV 1165
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
V + + P D WI N+YW++SNLDQIEVAKL G R TLIAG ME PRAI
Sbjct: 1166 VV---EHGLATPEGLTVD--WIAGNIYWIDSNLDQIEVAKLDGSLRTTLIAGAMEHPRAI 1220
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR+G+LFWTDWD+ PRIE SMSG R I + D+ T GAWPNGLT+D+ RI
Sbjct: 1221 ALDPRYGILFWTDWDANFPRIESASMSGAGRKTIYK-DMKT--GAWPNGLTVDHFEKRIV 1277
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
W DA+SD+I++ YDG ++ H+ L+HPFA++L+ + VYWTDWRTN++ +ANKW G
Sbjct: 1278 WTDARSDAIYSALYDGTAMIEIIRGHEYLSHPFAVSLYGSEVYWTDWRTNTLSKANKWTG 1337
Query: 570 SDVTLIQRTLTQPF---IYVNGVVKKSP--CEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+V++IQ+T QPF IY ++P C N+G CSH+CLI N + C CPH+M
Sbjct: 1338 QNVSVIQKTSAQPFDLQIYHPSRQPQAPNPCAANDGKGPCSHMCLINHNRSAACACPHLM 1397
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL SD KTC +F++++R EIRGVD+++PY++ I ++P + ++FDA+ ++
Sbjct: 1398 KLSSDKKTCYEM-KKFLLYARRSEIRGVDIDNPYFNFITAFTVPDIDDVTVIDFDASEER 1456
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVV 707
+YWTD + +KR+ I G ++ V+
Sbjct: 1457 LYWTDIKTQTIKRAFINGTGLETVI 1481
|
|
| UNIPROTKB|P98157 LRP1 "Low-density lipoprotein receptor-related protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.5e-116, Sum P(4) = 2.5e-116
Identities = 176/387 (45%), Positives = 240/387 (62%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L NQ LYW D + + ++ + SF +
Sbjct: 1277 IRRIDLHRGDYSVLVP-GLRNTIALDFHLNQSSLYWTDVVEDKIYRGKLLENGALTSFEV 1335
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + P D WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1336 VI---QYGLATPEGLAVD--WIAGNIYWVESNLDQIEVAKLDGTMRTTLLAGDIEHPRAI 1390
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR+G+LFWTDWD+ PRIE SMSG R I + T G WPNGLT+DY RI
Sbjct: 1391 ALDPRYGILFWTDWDASLPRIEAASMSGAGRRTIHKE---TGSGGWPNGLTVDYLEKRIL 1447
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1448 WIDARSDAIYSALYDGTGHIEVLRGHEYLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1507
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1508 HNVTVVQRTNTQPFDLQVYHPSRQPLAPNPCEANGGKGPCSHLCLINYNRTLSCACPHLM 1567
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL DN TC +F++++R EIRGVD+++PYY+ I + ++P + + +++DA ++
Sbjct: 1568 KLDKDNTTCYEF-KKFLLYARQMEIRGVDIDNPYYNYIISFTVPDIDNVTVVDYDAVEQR 1626
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDA 709
IYW+D +KR+ I G ++ VV A
Sbjct: 1627 IYWSDVRTQTIKRAFINGTGVETVVSA 1653
|
|
| MGI|MGI:96828 Lrp1 "low density lipoprotein receptor-related protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 3.9e-115, Sum P(5) = 3.9e-115
Identities = 177/387 (45%), Positives = 238/387 (61%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +Q LYW D + + ++ + SF +
Sbjct: 1280 IRRIDLHKGDYSVLVP-GLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEV 1338
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + P D WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1339 VI---QYGLATPEGLAVD--WIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAI 1393
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR G+LFWTDWD+ PRIE SMSG R I R T G WPNGLT+DY RI
Sbjct: 1394 ALDPRDGILFWTDWDASLPRIEAASMSGAGRRTIHRE---TGSGGWPNGLTVDYLEKRIL 1450
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1451 WIDARSDAIYSARYDGSGHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1510
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1511 HNVTVVQRTNTQPFDLQVYHPSRQPMAPNPCEANGGRGPCSHLCLINYNRTVSCACPHLM 1570
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL DN TC +F++++R EIRGVDL+ PYY+ I + ++P + + L++DA ++
Sbjct: 1571 KLHKDNTTCYEF-KKFLLYARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQR 1629
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDA 709
+YW+D +KR+ I G ++ VV A
Sbjct: 1630 VYWSDVRTQAIKRAFINGTGVETVVSA 1656
|
|
| UNIPROTKB|Q9NZR2 LRP1B "Low-density lipoprotein receptor-related protein 1B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 1.5e-114, Sum P(3) = 1.5e-114
Identities = 167/385 (43%), Positives = 244/385 (63%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +NQ +LYW D + + ++ S + +
Sbjct: 1270 IRRIDLHKRDYSLLVP-GLRNTIALDFHFNQSLLYWTDVVEDRIYRGKLSESGGVSAIEV 1328
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
V + + P D WI N+YW++SNLDQIEVAKL G R TLIAG ME PRAI
Sbjct: 1329 VV---EHGLATPEGLTVD--WIAGNIYWIDSNLDQIEVAKLDGSLRTTLIAGAMEHPRAI 1383
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR+G+LFWTDWD+ PRIE SMSG R I + D+ T GAWPNGLT+D+ RI
Sbjct: 1384 ALDPRYGILFWTDWDANFPRIESASMSGAGRKTIYK-DMKT--GAWPNGLTVDHFEKRIV 1440
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
W DA+SD+I++ YDG + ++ H+ L+HPFA++L+ + VYWTDWRTN++ +ANKW G
Sbjct: 1441 WTDARSDAIYSALYDGTNMIEIIRGHEYLSHPFAVSLYGSEVYWTDWRTNTLSKANKWTG 1500
Query: 570 SDVTLIQRTLTQPF---IYVNGVVKKSP--CEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+V++IQ+T QPF IY ++P C N+G CSH+CLI N + C CPH+M
Sbjct: 1501 QNVSVIQKTSAQPFDLQIYHPSRQPQAPNPCAANDGKGPCSHMCLINHNRSAACACPHLM 1560
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL SD KTC +F++++R EIRGVD+++PY++ I ++P + ++FDA+ ++
Sbjct: 1561 KLSSDKKTCYEM-KKFLLYARRSEIRGVDIDNPYFNFITAFTVPDIDDVTVIDFDASEER 1619
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVV 707
+YWTD + +KR+ I G ++ V+
Sbjct: 1620 LYWTDIKTQTIKRAFINGTGLETVI 1644
|
|
| UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 2.2e-114, Sum P(3) = 2.2e-114
Identities = 197/508 (38%), Positives = 285/508 (56%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +Q LYW D + + ++ + SF +
Sbjct: 1279 IRRIDLHKGDYSVLVP-GLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEV 1337
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + P D WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1338 VI---QYGLATPEGLAVD--WIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAI 1392
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR G+LFWTDWD+ PRIE SMSG R I R T G WPNGLT+DY RI
Sbjct: 1393 ALDPRDGILFWTDWDASLPRIEAASMSGAGRRTIHRE---TGSGGWPNGLTVDYLEKRIL 1449
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1450 WIDARSDAIYSARYDGSGHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1509
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1510 HNVTVVQRTNTQPFDLQVYHPSRQPMAPNPCEANGGRGPCSHLCLINYNRTVSCACPHLM 1569
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL DN TC +F++++R EIRGVDL+ PYY+ I + ++P + + L++DA ++
Sbjct: 1570 KLHKDNTTCYEF-KKFLLYARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAHEQR 1628
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSI--VGGQIQLVVDAGISHP 740
+YW+D +KR+ I G ++ VV A K+ ++ + G + V G+ P
Sbjct: 1629 VYWSDVRTQAIKRAFINGTGVETVVSADLPNAHGLAEKQINVARLDGSFKNAVVQGLEQP 1688
Query: 741 SGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVK 800
GL + + ++ I + N++G +T + S + +A+ +
Sbjct: 1689 HGLVVHPLRGKLYWTDGD----NISMANMDGSNRTLLFSGQKGPVG-------LAIDFPE 1737
Query: 801 GKMFWSNVTKQVVTIEMAFMDGTKRETV 828
K++W ++ TI +DG++ E +
Sbjct: 1738 SKLYW--ISSGNHTINRCNLDGSELEVI 1763
|
|
| UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 2.4e-114, Sum P(4) = 2.4e-114
Identities = 177/387 (45%), Positives = 239/387 (61%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +Q LYW D + + ++ + SF +
Sbjct: 1280 IRRIDLHKGDYSVLVP-GLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEV 1338
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + P D WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1339 VI---QYGLATPEGLAVD--WIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAI 1393
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR G+LFWTDWD+ PRIE SMSG R I R T G WPNGLT+DY RI
Sbjct: 1394 ALDPRDGILFWTDWDASLPRIEAASMSGAGRRTIHRE---TGSGGWPNGLTVDYLEKRIL 1450
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1451 WIDARSDAIYSARYDGSGHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1510
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1511 HNVTVVQRTNTQPFDLQVYHPSRQPMAPNPCEANGGRGPCSHLCLINYNRTVSCACPHLM 1570
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL +DN TC +F++++R EIRGVDL+ PYY+ I + ++P + + L++DA ++
Sbjct: 1571 KLHNDNTTCYEF-KKFLLYARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQR 1629
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDA 709
+YW+D +KR+ I G ++ VV A
Sbjct: 1630 VYWSDVRTQAIKRAFINGTGVETVVSA 1656
|
|
| UNIPROTKB|Q07954 LRP1 "Prolow-density lipoprotein receptor-related protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 868 (310.6 bits), Expect = 4.8e-114, Sum P(3) = 4.8e-114
Identities = 176/387 (45%), Positives = 238/387 (61%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
I + +H + S LV ++ +L +Q LYW D + + ++ + SF +
Sbjct: 1279 IRRIDLHKGDYSVLVP-GLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEV 1337
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+ + P D WI N+YWVESNLDQIEVAKL G R TL+AGD+E PRAI
Sbjct: 1338 VI---QYGLATPEGLAVD--WIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAI 1392
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
ALDPR G+LFWTDWD+ PRIE SMSG R + R T G WPNGLT+DY RI
Sbjct: 1393 ALDPRDGILFWTDWDASLPRIEAASMSGAGRRTVHRE---TGSGGWPNGLTVDYLEKRIL 1449
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
WIDA+SD+I++ YDG H VL H+ L+HPFA+ L+ VYWTDWRTN++ +ANKW G
Sbjct: 1450 WIDARSDAIYSARYDGSGHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTG 1509
Query: 570 SDVTLIQRTLTQPF---IY--VNGVVKKSPCEMNNGN--CSHLCLIGMNGTYKCQCPHVM 622
+VT++QRT TQPF +Y + +PCE N G CSHLCLI N T C CPH+M
Sbjct: 1510 HNVTVVQRTNTQPFDLQVYHPSRQPMAPNPCEANGGQGPCSHLCLINYNRTVSCACPHLM 1569
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
KL DN TC +F++++R EIRGVDL+ PYY+ I + ++P + + L++DA ++
Sbjct: 1570 KLHKDNTTCYEF-KKFLLYARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQR 1628
Query: 683 IYWTDQEYNEVKRSSIVGGQIQLVVDA 709
+YW+D +KR+ I G ++ VV A
Sbjct: 1629 VYWSDVRTQAIKRAFINGTGVETVVSA 1655
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 841 | |||
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 3e-09 | |
| cd00112 | 35 | cd00112, LDLa, Low Density Lipoprotein Receptor Cl | 2e-08 | |
| pfam00057 | 37 | pfam00057, Ldl_recept_a, Low-density lipoprotein r | 7e-08 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 3e-07 | |
| cd00112 | 35 | cd00112, LDLa, Low Density Lipoprotein Receptor Cl | 3e-07 | |
| pfam00057 | 37 | pfam00057, Ldl_recept_a, Low-density lipoprotein r | 3e-07 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 7e-07 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 1e-06 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 1e-05 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 1e-05 | |
| smart00192 | 33 | smart00192, LDLa, Low-density lipoprotein receptor | 1e-05 | |
| smart00192 | 33 | smart00192, LDLa, Low-density lipoprotein receptor | 1e-05 | |
| cd00112 | 35 | cd00112, LDLa, Low Density Lipoprotein Receptor Cl | 4e-05 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 4e-05 | |
| pfam00057 | 37 | pfam00057, Ldl_recept_a, Low-density lipoprotein r | 1e-04 | |
| smart00192 | 33 | smart00192, LDLa, Low-density lipoprotein receptor | 1e-04 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 4e-04 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 0.001 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 0.002 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 0.003 | |
| pfam12662 | 24 | pfam12662, cEGF, Complement Clr-like EGF-like | 0.004 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-09
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 436 RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR 480
RTL++ + P +A+D G L+WTDW IE ++ G +R
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-08
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C + F C RCIP +W CDG+ DCG D SDE++C
Sbjct: 1 CPPNEFRCA-NGRCIPSSWVCDGEDDCG--DGSDEENC 35
|
Length = 35 |
| >gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-08
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C CIP++W CDG PDC D SDE +C
Sbjct: 1 STCGPDEFQCGSG-ECIPMSWVCDGDPDCE--DGSDEKNC 37
|
Length = 37 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-07
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
L++ + P+ L +D+ + LYW D L+ +E +DG+ R
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-07
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C P+EF C + CIP + VCDGE C +G DE C
Sbjct: 1 CPPNEFRCAN--GRCIPSSWVCDGEDDCGDGSDEENC 35
|
Length = 35 |
| >gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-07
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C P EF C CIP + VCDG+P C +G DE C
Sbjct: 1 STCGPDEFQCGS--GECIPMSWVCDGDPDCEDGSDEKNC 37
|
Length = 37 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-07
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 488 LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH 528
LL+S PNGL +D+ R+YW D D I DG +
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-06
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 414 NLYWVESNLDQ-IEVAKLSGQFRRTLIAGDMESPRAIALDP 453
LYW +S+L I VA L+G RRTL + D++ P IA+DP
Sbjct: 2 RLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 529 HVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDV 572
+LS+ + A+ E +YWTDW + VI +G++
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLD-VIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 1e-05
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 312 YMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDY 358
++W SL S I A ++G +R L ++++QWP+ + +D
Sbjct: 2 RLYWTDSSLRAS------ISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-05
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE 66
C F C+ RCIP +W CDG DCG D SDE
Sbjct: 1 TCPPGEFQCDNG-RCIPSSWVCDGVDDCG--DGSDE 33
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33 |
| >gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-05
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
C P EF C + CIP + VCDG C +G DE
Sbjct: 2 CPPGEFQCDN--GRCIPSSWVCDGVDDCGDGSDE 33
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33 |
| >gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHC 27
CI + W CDG++DC DGSDE E+C
Sbjct: 12 RCIPSSWVCDGEDDCGDGSDE--ENC 35
|
Length = 35 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503
G L+WTD +A I ++G R + DL WPNG+ +D
Sbjct: 1 GRLYWTDSSLRA-SISVADLNGSDRRTLFSEDL-----QWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI W CDGD DC+DGSDE ++C
Sbjct: 15 CIPMSWVCDGDPDCEDGSDE--KNC 37
|
Length = 37 |
| >gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 1e-04
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 2 TCIIAYWKCDGDEDCKDGSDE 22
CI + W CDG +DC DGSDE
Sbjct: 13 RCIPSSWVCDGVDDCGDGSDE 33
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 4e-04
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 290 VVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENR 340
++ +GL GLAVDWI LY W ++ IE A + G NR
Sbjct: 2 TLLSSGLGHPNGLAVDWIEGRLY--W-------TDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 732 VVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEG 771
++ +G+ HP+GLA+DWI ++ + I V NL+G
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYW--TDWGLDVIEVANLDG 40
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 788 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR 825
L + +AV ++G+++W++ V IE+A +DGT R
Sbjct: 8 LGHPNGLAVDWIEGRLYWTDWGLDV--IEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 410 WIGKNLYWVESNLDQIEVAKLSGQFR 435
WI LYW + LD IEVA L G R
Sbjct: 18 WIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 193 SYKCTCHAGYELEPDMFTCK 212
SY C+C GY+L D TC+
Sbjct: 1 SYTCSCPPGYQLSGDGRTCE 20
|
cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteristic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue. Length = 24 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| KOG1214|consensus | 1289 | 100.0 | ||
| KOG1215|consensus | 877 | 100.0 | ||
| KOG1215|consensus | 877 | 100.0 | ||
| KOG1214|consensus | 1289 | 100.0 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.85 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.83 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.74 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.73 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.46 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.45 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.45 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.44 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.41 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.38 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.31 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.2 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.2 | |
| KOG4659|consensus | 1899 | 99.19 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.17 | |
| KOG4659|consensus | 1899 | 99.14 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.13 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.11 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.1 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.08 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.06 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.04 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.92 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.86 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.83 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.77 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 98.75 | |
| KOG1520|consensus | 376 | 98.74 | ||
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 98.72 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 98.67 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.63 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.63 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.62 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.59 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 98.53 | |
| KOG4499|consensus | 310 | 98.52 | ||
| KOG1520|consensus | 376 | 98.5 | ||
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.45 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.4 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.37 | |
| KOG4260|consensus | 350 | 98.35 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.3 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.27 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.27 | |
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 98.25 | |
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 98.19 | |
| KOG1219|consensus | 4289 | 98.18 | ||
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.13 | |
| KOG4499|consensus | 310 | 98.12 | ||
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.12 | |
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 98.11 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.11 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.11 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.1 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 98.08 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.0 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.0 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.99 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.98 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.87 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.87 | |
| PF12999 | 176 | PRKCSH-like: Glucosidase II beta subunit-like | 97.86 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.86 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.84 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.84 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.83 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.82 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.82 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.81 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.8 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 97.79 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.78 | |
| KOG4260|consensus | 350 | 97.75 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.73 | |
| KOG1219|consensus | 4289 | 97.73 | ||
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.72 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.7 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 97.67 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.67 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.65 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.63 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.63 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.62 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.61 | |
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 97.6 | |
| PF12999 | 176 | PRKCSH-like: Glucosidase II beta subunit-like | 97.54 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 97.42 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.37 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.27 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.19 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.14 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.07 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.06 | |
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 97.04 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.03 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.02 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.98 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.86 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.83 | |
| KOG4289|consensus | 2531 | 96.77 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.73 | |
| KOG3509|consensus | 964 | 96.53 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.02 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.02 | |
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 95.98 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.91 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 95.51 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 95.37 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 95.15 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.83 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.65 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 94.64 | |
| KOG1446|consensus | 311 | 94.64 | ||
| KOG0315|consensus | 311 | 94.53 | ||
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 94.25 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.02 | |
| KOG1225|consensus | 525 | 93.98 | ||
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 93.9 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 93.89 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.61 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 93.54 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 93.51 | |
| KOG1217|consensus | 487 | 93.5 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.49 | |
| KOG0289|consensus | 506 | 93.42 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.23 | |
| KOG1225|consensus | 525 | 93.12 | ||
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 93.03 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.03 | |
| KOG0285|consensus | 460 | 92.66 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.58 | |
| KOG2397|consensus | 480 | 91.49 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 90.92 | |
| KOG0286|consensus | 343 | 90.9 | ||
| PTZ00421 | 493 | coronin; Provisional | 90.68 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 90.67 | |
| KOG4289|consensus | 2531 | 90.55 | ||
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 90.33 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 90.33 | |
| KOG0268|consensus | 433 | 90.17 | ||
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 90.13 | |
| KOG3509|consensus | 964 | 89.15 | ||
| KOG0994|consensus | 1758 | 88.79 | ||
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 88.76 | |
| KOG4441|consensus | 571 | 88.47 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 88.2 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 88.1 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 88.07 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 87.83 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 87.47 | |
| KOG1217|consensus | 487 | 86.65 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 86.19 | |
| PF06247 | 197 | Plasmod_Pvs28: Plasmodium ookinete surface protein | 86.18 | |
| PF09064 | 34 | Tme5_EGF_like: Thrombomodulin like fifth domain, E | 86.08 | |
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 85.89 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 85.62 | |
| KOG0994|consensus | 1758 | 85.45 | ||
| KOG0268|consensus | 433 | 85.4 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 85.06 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 84.78 | |
| KOG0273|consensus | 524 | 84.46 | ||
| KOG2397|consensus | 480 | 84.19 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 84.17 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 83.46 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 83.21 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 82.9 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 82.36 | |
| KOG0315|consensus | 311 | 82.34 | ||
| PTZ00420 | 568 | coronin; Provisional | 82.25 | |
| PF09064 | 34 | Tme5_EGF_like: Thrombomodulin like fifth domain, E | 81.44 | |
| KOG0285|consensus | 460 | 80.43 |
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=488.27 Aligned_cols=386 Identities=35% Similarity=0.687 Sum_probs=308.8
Q ss_pred CCCCCCCCCCCCCCC--CCccc---ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccccc----cccCC---
Q psy14257 112 KALVCDGEPACFNGE--DEMFC---DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYL----HPCEA--- 177 (841)
Q Consensus 112 ~~~~Cdg~~~C~~g~--de~~C---~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~----~eC~~--- 177 (841)
.++.| .|.+|| |+..| |||+ ++.|.+ .|.|++++|.|.|.+||+ .||.+|..- ..|+.
T Consensus 807 s~y~C----~CLPGfsGDG~~c~dvDeC~--psrChp~A~CyntpgsfsC~C~pGy~--GDGf~CVP~~~~~T~C~~er~ 878 (1289)
T KOG1214|consen 807 STYSC----ACLPGFSGDGHQCTDVDECS--PSRCHPAATCYNTPGSFSCRCQPGYY--GDGFQCVPDTSSLTPCEQERF 878 (1289)
T ss_pred ceEEE----eecCCccCCccccccccccC--ccccCCCceEecCCCcceeecccCcc--CCCceecCCCccCCccccccc
Confidence 37888 999999 45556 8898 668964 899999999999999998 567777532 22210
Q ss_pred ----------------------------CC----Ccc----C---ceee-------cCCCCceEEeecCC--eeecC---
Q psy14257 178 ----------------------------WG----TCS----Q---DCEP-------SVSNNSYKCTCHAG--YELEP--- 206 (841)
Q Consensus 178 ----------------------------~~----~Cs----~---~C~~-------~~~~g~~~C~C~~G--~~l~~--- 206 (841)
++ .|. + .|.. .+|..++.|+|..+ .....
T Consensus 879 hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~~~vp~Cd~hgh~ap~qchG~~~~CwCvd~dGrev~gtr~ 958 (1289)
T KOG1214|consen 879 HPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEQYVPQCDDHGHFAPLQCHGKSDFCWCVDKDGREVQGTRS 958 (1289)
T ss_pred cceeeccccceeEeeCCCcccCCCCCCCCCCCCCCCCCcccccCCCccccccccccccCCCcceeEEecCCCcCcccccc
Confidence 01 010 1 1110 02455689999763 22110
Q ss_pred ---CCCceEeCC---------------CCCCCCeEEeccCcccccccccccc-----EEEEec-cccceeeecccccCCc
Q psy14257 207 ---DMFTCKSKS---------------KNDSSPFVIFSNRHELRGVDLRTFN-----VIALIS-SLKNTIALDFYYTPTA 262 (841)
Q Consensus 207 ---d~~~C~~~~---------------~~~~~p~ll~s~~~~I~~~~~~~~~-----~~~l~~-~~~~~~avd~~~~~~~ 262 (841)
....|.... ......+|||++...|.++++++.. .++++. .-+.+++||||.++++
T Consensus 959 ~pg~tp~CiptvApp~v~np~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~m 1038 (1289)
T KOG1214|consen 959 QPGTTPACIPTVAPPMVRNPTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERM 1038 (1289)
T ss_pred CCCCCCCccCCCCCCcccCCCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccce
Confidence 011232211 0122348999999999999998732 233332 2356899999998855
Q ss_pred ceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccc
Q psy14257 263 NMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSP 342 (841)
Q Consensus 263 ~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~ 342 (841)
|||+|.....|.|++|.|+ +.++++..+|.+|+||||||.+
T Consensus 1039 --vyWtDv~g~SI~rasL~G~---Ep~ti~n~~L~SPEGiAVDh~~---------------------------------- 1079 (1289)
T KOG1214|consen 1039 --VYWTDVAGRSISRASLEGA---EPETIVNSGLISPEGIAVDHIR---------------------------------- 1079 (1289)
T ss_pred --EEEeecCCCccccccccCC---CCceeecccCCCccceeeeecc----------------------------------
Confidence 9999999999999999854 7899999999999999999876
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL 422 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~ 422 (841)
+++||||+..
T Consensus 1080 ----------------------------------------------------------------------Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1080 ----------------------------------------------------------------------RNMYWTDSVL 1089 (1289)
T ss_pred ----------------------------------------------------------------------ceeeeecccc
Confidence 8899999999
Q ss_pred CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEe
Q psy14257 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502 (841)
Q Consensus 423 ~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD 502 (841)
++|+|+.|||+.+++|+.++|.+||+|++|+.+|.||||||++++++|++++|||+++++++. ..+..||||++|
T Consensus 1090 D~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin-----~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN-----TDIGLPNGLTFD 1164 (1289)
T ss_pred chhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee-----cccCCCCCceeC
Confidence 999999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred ccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEE-EecccCC
Q psy14257 503 YQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTL-IQRTLTQ 581 (841)
Q Consensus 503 ~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~-i~~~~~~ 581 (841)
+..+.|-|+|+++++++.+.++|..|+++..+ |+.||+|+-+++.+|||||..++|..+++..++.... +...-..
T Consensus 1165 pfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~---LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~~s~ 1241 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGTKRLECTLPDGTGRRVIQNN---LQYPFSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQRSH 1241 (1289)
T ss_pred cccceeeEEecCCcceeEecCCCCcchhhhhc---ccCceeeeeccccceeeccccCceEEeeccccccccccccccccc
Confidence 99999999999999999999999999998865 8999999999999999999999999999988776543 3222233
Q ss_pred Cceec----cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCce
Q psy14257 582 PFIYV----NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMK 623 (841)
Q Consensus 582 p~~~h----~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~ 623 (841)
.+|+. .-|.+++||+.+||||+||||+.-++ ..|.||+...
T Consensus 1242 lyGItav~~~Cp~gstpCSedNGGCqHLCLpgqng-avcecpdnvk 1286 (1289)
T KOG1214|consen 1242 LYGITAVYPYCPTGSTPCSEDNGGCQHLCLPGQNG-AVCECPDNVK 1286 (1289)
T ss_pred eEEEEeccccCCCCCCcccccCCcceeecccCcCC-ccccCCccce
Confidence 55522 45899999999999999999987766 6899998643
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=532.35 Aligned_cols=641 Identities=36% Similarity=0.691 Sum_probs=509.0
Q ss_pred CeeccCccCcCCcCCCCCCCCCCCCCCCCCCC--C-------------------------------------CCCcccCC
Q psy14257 1 MTCIIAYWKCDGDEDCKDGSDELAEHCQDRKC--D-------------------------------------ESHFTCNE 41 (841)
Q Consensus 1 ~~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C--~-------------------------------------~~~~~C~~ 41 (841)
.+|||..|+||+..||.||+||. .|....+ . ...++|..
T Consensus 150 ~~Cip~~~~cd~~~~C~dg~de~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~c~g 227 (877)
T KOG1215|consen 150 CKCIPGDWLCDGEADCPDGSDEL--NCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDSRIEVTRCDG 227 (877)
T ss_pred ccCCCCceeCCCCCccccchhhh--cccccccCccccccccceeeeecCcccccccccccccCcccccCCcceeEEEecC
Confidence 37999999999999999999999 6642112 1 23344543
Q ss_pred CCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccCCCCCeEecCCCCCCCCCC
Q psy14257 42 TLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPA 121 (841)
Q Consensus 42 ~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~ 121 (841)
...||...|+|||..||. +++||.- .+|.. ..|...++.|.+ +.|++....|+|..+
T Consensus 228 ~~~~i~~~~~~Dg~~dc~--~~~de~~-----------~~~~~--------~~~~~~e~~~~~--~~~~~~~~~~~g~~d 284 (877)
T KOG1215|consen 228 SSRCILISEVCDGPRDCV--DGPDEGV-----------MNCSD--------ATCEAPEIECAD--GDCSDRQKLCDGDLD 284 (877)
T ss_pred CCcEEeehhccCCCcccc--cCCcCce-----------eEeec--------cccCCcceeecC--CCCccceEEecCccC
Confidence 346666666666666666 6555520 12221 345556778876 889898888999999
Q ss_pred CCCCCCCccc-------------------------------ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 122 CFNGEDEMFC-------------------------------DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 122 C~~g~de~~C-------------------------------~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|++|.++..| ++|......|.+.|.+......|.|..++.+...... .
T Consensus 285 ~pdg~de~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~ 363 (877)
T KOG1215|consen 285 CPDGLDEDYCKKKLYWSMNVDGSGRRILLSKLCHGYWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLPLGART-D 363 (877)
T ss_pred CCCcccccccccceeeeeecccCCceeeecccCccccccccccchhhcccccCCCCccccCCcccCCccceecccccc-c
Confidence 9999988633 2333344577788999999999999999988665555 2
Q ss_pred cccccCCCCCccCcee-ecCCCCceEEeecCCeeecCCCCceEeCCCCCCCCeEEeccCccccccccccccEEEEecccc
Q psy14257 171 YLHPCEAWGTCSQDCE-PSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLK 249 (841)
Q Consensus 171 ~~~eC~~~~~Cs~~C~-~~~~~g~~~C~C~~G~~l~~d~~~C~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~ 249 (841)
..+++...+.|+|.|. +. ++.+.|.|..||.+..++ |... ...++++++++..+|+++.++...+...++.+.
T Consensus 364 ~~~~~~~~g~Csq~C~~~~--p~~~~c~c~~g~~~~~~~--c~~~--~~~~~~l~~s~~~~ir~~~~~~~~~~~p~~~~~ 437 (877)
T KOG1215|consen 364 SNPCESDNGGCSQLCVPNS--PGTFKCACSPGYELRLDK--CEAS--DQPEAFLLFSNRHDIRRISLDCSDVSRPLEGIK 437 (877)
T ss_pred CCcccccCCccceeccCCC--CCceeEecCCCcEeccCC--ceec--CCCCcEEEEecCccceecccCCCcceEEccCCc
Confidence 2333346799999998 55 899999999999998777 7665 457899999999999999998876666667678
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
+++++|+++.++. +||+|....+|.++...+.. ... +...++..|+|+|+||.+
T Consensus 438 ~~~~~d~d~~~~~--i~~~d~~~~~i~~~~~~~~~--~~~-~~~~g~~~~~~lavD~~~--------------------- 491 (877)
T KOG1215|consen 438 NAVALDFDVLNNR--IYWADLSDEKICRASQDGSS--ECE-LCGDGLCIPEGLAVDWIG--------------------- 491 (877)
T ss_pred cceEEEEEecCCE--EEEEeccCCeEeeeccCCCc--cce-EeccCccccCcEEEEecc---------------------
Confidence 8999999998776 99999999999999877654 223 566778888888888766
Q ss_pred EEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccc
Q psy14257 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNL 409 (841)
Q Consensus 330 I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avd 409 (841)
T Consensus 492 -------------------------------------------------------------------------------- 491 (877)
T KOG1215|consen 492 -------------------------------------------------------------------------------- 491 (877)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEeccc
Q psy14257 410 WIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489 (841)
Q Consensus 410 w~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~ 489 (841)
+++||+|.....|.+.+++|..+.+++...+..|+.++++|..|++||+||+. .++|.|+.|||+.+..++.
T Consensus 492 ---~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~-~~~i~ra~~dg~~~~~l~~---- 563 (877)
T KOG1215|consen 492 ---DNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQ-PPRIERASLDGSERAVLVT---- 563 (877)
T ss_pred ---CCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCC-CchhhhhcCCCCCceEEEe----
Confidence 88899999999999999999999999998889999999999999999999996 5699999999999999998
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCC-eEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccC
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSD-SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~-~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~ 568 (841)
.++.+|+||++|...+++||+|.... .|++++.+|..++.+. ...+.+|++++++++++||+||....+.+..+..
T Consensus 564 -~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~--~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~ 640 (877)
T KOG1215|consen 564 -NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVD--SEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHK 640 (877)
T ss_pred -CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEec--cccCCCceEEEEecceeEEeeccccceEeeeccc
Confidence 67899999999999999999999998 8999999999998222 2358999999999999999999999999999988
Q ss_pred CcceEEEecccCCCce---e-c--cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee
Q psy14257 569 GSDVTLIQRTLTQPFI---Y-V--NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS 642 (841)
Q Consensus 569 g~~~~~i~~~~~~p~~---~-h--~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~ 642 (841)
+.....+......|.. + | .+|.+.|+|+..|++|+|+|++.+.+. +|+||.|+.|..++++|. ....+++++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~~~-~c~c~~~~~l~~~~~~C~-~~~~~~~~~ 718 (877)
T KOG1215|consen 641 GSDSRTSRSNLAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQGS-TCACPEGYRLSPDGKSCS-SPEGYLLIT 718 (877)
T ss_pred CCcceeeecccCcccceEEEeccccCCCCCCcccccCCCCCeeeecCCCCC-eeeCCCCCeecCCCCeec-Ccccccccc
Confidence 8761123334455554 4 3 678999999999999999999999887 999999999999999999 577789999
Q ss_pred cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccc
Q psy14257 643 RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRS 722 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 722 (841)
....|..+..+.......+. +.. +..++..+|++...+...+...+...
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 767 (877)
T KOG1215|consen 719 SRTGIPCISLDSELSPDQPL-EDG----------DTIDRLEYWTDVRVGVAAVSSQNCAP-------------------- 767 (877)
T ss_pred cccccceeecCcccCCCccc-CCC----------cccccceecccccceeeEEEecCCCC--------------------
Confidence 99999988887654443221 111 77899999999877777777776655
Q ss_pred cccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCe
Q psy14257 723 SIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGK 802 (841)
Q Consensus 723 ~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~ 802 (841)
...++......|.++|+++..+.|||+ ....+.|.+..+++..............+.+..|+.+.++|....
T Consensus 768 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (877)
T KOG1215|consen 768 ------GYDLVGEGEPPPEGSAVDEAEDTLYWT--CSATSFIEVSGLDGERKCRRRPEGVVDFDNPVPPRTTGVEPEKSL 839 (877)
T ss_pred ------ccccccccCCCCCCceeehhhcceEEE--eecccEEEEEEEeeecccccccccccccCCCCCCcceeeccccce
Confidence 112455677889999999999999999 457889999999885211111000011112789999999999999
Q ss_pred EEEEecCCCcceEEEEecCCCceEEEecCC
Q psy14257 803 MFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832 (841)
Q Consensus 803 lyw~d~~~~~~~I~~~~~dG~~~~~l~~~~ 832 (841)
+||+++ ...+.|.++.++++++..++...
T Consensus 840 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 868 (877)
T KOG1215|consen 840 LFWTNW-EPGPKIPRSALDGSERLVLFKSL 868 (877)
T ss_pred eccCCc-cccceeeecccccccccceeccC
Confidence 999998 33368999999999999998876
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=344.66 Aligned_cols=452 Identities=29% Similarity=0.516 Sum_probs=358.0
Q ss_pred ccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEe
Q psy14257 299 AEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRV 378 (841)
Q Consensus 299 p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~l 378 (841)
|+.+|++|.. ++|||+||+++ |+ ||..++.+....+.||+|+++|+..+.+||+|...+.|.+.++
T Consensus 1 pra~~~~p~~--~~l~wtd~~~~--------i~----dg~~~~~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~ 66 (877)
T KOG1215|consen 1 PRAIALLPLE--GLLFWTDWGAN--------IE----DGGERKILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIESANY 66 (877)
T ss_pred CceEEecccc--ceEEEecCCcc--------cc----cCcceEEeeccceeCCCcceecchhheeeeccccCCceEEecc
Confidence 6678888854 99999999851 55 7777778888899999999999999999999999999999999
Q ss_pred cCCccEEE--Eee---------------------------------eeecC---C---Ccccc-----------------
Q psy14257 379 DGSERTVS--FNL---------------------------------EVLGS---D---SRVGI----------------- 400 (841)
Q Consensus 379 dG~~~~~~--~~~---------------------------------~~~~~---~---~~~~i----------------- 400 (841)
+|+.++.+ +.. ..... + .....
T Consensus 67 dg~~r~~l~~~~~~~y~~d~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 146 (877)
T KOG1215|consen 67 DGSGRRALTLFEDGLYWTDKSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSCR 146 (877)
T ss_pred CCccceeeeeeccceeeccchhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCCCcccccCCCCCccccCCCCCCc
Confidence 99764400 000 00000 0 00000
Q ss_pred -------C---------CC-----------------------------------CCCccccccceEEEEecCCCcEEEEc
Q psy14257 401 -------P---------NC-----------------------------------RPEDNLWIGKNLYWVESNLDQIEVAK 429 (841)
Q Consensus 401 -------~---------~~-----------------------------------~~~avdw~~~~LY~tD~~~~~I~v~~ 429 (841)
+ .| -+.+.|-....+||++.. +|.+++
T Consensus 147 ~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~--~~~~~~ 224 (877)
T KOG1215|consen 147 TGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDS--RIEVTR 224 (877)
T ss_pred CccccCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCCc--ceeEEE
Confidence 0 00 011123455667777643 689999
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
.+|+...+........|++++..+..+++||+++....+.+...++++..+..+.. ..+..|+|++.++....+|
T Consensus 225 c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-----g~~d~pdg~de~~~~~~~~ 299 (877)
T KOG1215|consen 225 CDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCD-----GDLDCPDGLDEDYCKKKLY 299 (877)
T ss_pred ecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEec-----CccCCCCccccccccccee
Confidence 99987777777778899999999999999999998666799999999999999877 6777899999999999999
Q ss_pred EEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec
Q psy14257 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV 586 (841)
Q Consensus 510 w~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h 586 (841)
| ..++++..++ |.... +.++ ||+++.+..+.+..+.++....+.........+ ++
T Consensus 300 ~---------~~~~d~~~~~-i~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 357 (877)
T KOG1215|consen 300 W---------SMNVDGSGRR-ILLSK--LCHG----------YWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLP 357 (877)
T ss_pred e---------eeecccCCce-eeecc--cCcc----------ccccccccchhhcccccCCCCccccCCcccCCccceec
Confidence 9 6778887777 65442 3333 699998888877777666654443333222222 33
Q ss_pred -cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeec
Q psy14257 587 -NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISI 665 (841)
Q Consensus 587 -~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 665 (841)
......++|...||+|+|+|+....+.+.|+|+.||.+..++..+......|++++....|+.+.++.. ....|+
T Consensus 358 ~~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~~~ir~~~~~~~----~~~~p~ 433 (877)
T KOG1215|consen 358 LGARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNRHDIRRISLDCS----DVSRPL 433 (877)
T ss_pred ccccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecCccceecccCCC----cceEEc
Confidence 222367999999999999999766677999999999999887222223589999999999999999876 234566
Q ss_pred CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEE
Q psy14257 666 PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAI 745 (841)
Q Consensus 666 ~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAv 745 (841)
.++.++.++++|..++.+||+|.....|.+...++.. ...+...+...|.+||+
T Consensus 434 ~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~--------------------------~~~~~~~g~~~~~~lav 487 (877)
T KOG1215|consen 434 EGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSS--------------------------ECELCGDGLCIPEGLAV 487 (877)
T ss_pred cCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCc--------------------------cceEeccCccccCcEEE
Confidence 7778899999999999999999999999999999877 44566778899999999
Q ss_pred eecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCce
Q psy14257 746 DWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR 825 (841)
Q Consensus 746 D~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~ 825 (841)
||+.+++||+ |.....|++.+++|..|.+++.. .+..|++++|||..|+|||+||+.. ++|+|+.|||+.|
T Consensus 488 D~~~~~~y~t--De~~~~i~v~~~~g~~~~vl~~~------~l~~~r~~~v~p~~g~~~wtd~~~~-~~i~ra~~dg~~~ 558 (877)
T KOG1215|consen 488 DWIGDNIYWT--DEGNCLIEVADLDGSSRKVLVSK------DLDLPRSIAVDPEKGLMFWTDWGQP-PRIERASLDGSER 558 (877)
T ss_pred EeccCCceec--ccCCceeEEEEccCCceeEEEec------CCCCccceeeccccCeeEEecCCCC-chhhhhcCCCCCc
Confidence 9999999999 78999999999999999999974 1689999999999999999999974 6999999999999
Q ss_pred EEEecCC
Q psy14257 826 ETVVSQK 832 (841)
Q Consensus 826 ~~l~~~~ 832 (841)
.+++...
T Consensus 559 ~~l~~~~ 565 (877)
T KOG1215|consen 559 AVLVTNG 565 (877)
T ss_pred eEEEeCC
Confidence 9999986
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=304.90 Aligned_cols=248 Identities=22% Similarity=0.375 Sum_probs=199.4
Q ss_pred ceEEEEecCCCcEEEEccCCceEE-----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRR-----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD 487 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~-----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~ 487 (841)
.+|.++. ..+|....++|.... +++.-.-.-|.||++|-...++||||.. .+.|.|+.|.|...+.++.
T Consensus 991 t~LL~aq--g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~--g~SI~rasL~G~Ep~ti~n-- 1064 (1289)
T KOG1214|consen 991 TFLLYAQ--GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVA--GRSISRASLEGAEPETIVN-- 1064 (1289)
T ss_pred ceEEEec--cceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecC--CCccccccccCCCCceeec--
Confidence 3444443 245666666654321 2333333568999999999999999987 7899999999999999998
Q ss_pred ccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEe
Q psy14257 488 LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 488 ~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~ 565 (841)
..|..|.|||||.....+||+|+.+++|+++.|||+.+++++... |-+|.+|++ ..++||||||...
T Consensus 1065 ---~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~td--LVNPR~iv~D~~rgnLYwtDWnRe------ 1133 (1289)
T KOG1214|consen 1065 ---SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTD--LVNPRAIVVDPIRGNLYWTDWNRE------ 1133 (1289)
T ss_pred ---ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeec--ccCcceEEeecccCceeecccccc------
Confidence 789999999999999999999999999999999999999998765 778888887 4688999888521
Q ss_pred ccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCC
Q psy14257 566 KWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPR 645 (841)
Q Consensus 566 ~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~ 645 (841)
T Consensus 1134 -------------------------------------------------------------------------------- 1133 (1289)
T KOG1214|consen 1134 -------------------------------------------------------------------------------- 1133 (1289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccccccccccc
Q psy14257 646 EIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIV 725 (841)
Q Consensus 646 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (841)
+-.|.+..+||++
T Consensus 1134 --------------------------------------------nPkIets~mDG~N----------------------- 1146 (1289)
T KOG1214|consen 1134 --------------------------------------------NPKIETSSMDGEN----------------------- 1146 (1289)
T ss_pred --------------------------------------------CCcceeeccCCcc-----------------------
Confidence 0112233355666
Q ss_pred CceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEE
Q psy14257 726 GGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFW 805 (841)
Q Consensus 726 ~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw 805 (841)
++++++.++.-|+||.||+.++.|-|+ |.++++++-...+|..|+++.++ |.-|.+|+-+.+ .+||
T Consensus 1147 ---rRilin~DigLPNGLtfdpfs~~LCWv--DAGt~rleC~~p~g~gRR~i~~~-------LqYPF~itsy~~--~fY~ 1212 (1289)
T KOG1214|consen 1147 ---RRILINTDIGLPNGLTFDPFSKLLCWV--DAGTKRLECTLPDGTGRRVIQNN-------LQYPFSITSYAD--HFYH 1212 (1289)
T ss_pred ---ceEEeecccCCCCCceeCcccceeeEE--ecCCcceeEecCCCCcchhhhhc-------ccCceeeeeccc--ccee
Confidence 667788899999999999999999999 78999999999999999999998 999999999877 5999
Q ss_pred EecCCCcceEEEEecCCCceEEEecCCCCceeccc
Q psy14257 806 SNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTGV 840 (841)
Q Consensus 806 ~d~~~~~~~I~~~~~dG~~~~~l~~~~~~~~~~~~ 840 (841)
|||..+ +|...++-++.-+-.....+..-+.||
T Consensus 1213 TDWk~n--~vvsv~~~~~~~td~~~p~~~s~lyGI 1245 (1289)
T KOG1214|consen 1213 TDWKRN--GVVSVNKHSGQFTDEYLPEQRSHLYGI 1245 (1289)
T ss_pred eccccC--ceEEeeccccccccccccccccceEEE
Confidence 999986 799999888877666655544445554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=220.57 Aligned_cols=269 Identities=16% Similarity=0.205 Sum_probs=198.9
Q ss_pred EEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc-------------cCcCCCceEEEE
Q psy14257 291 VVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT-------------KNIQWPSSLVID 357 (841)
Q Consensus 291 ~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~-------------~~~~~P~glavD 357 (841)
++.+.+..|.|+|+|..++++|| +| ..+++|.+++.+|.....+.. ..+..|.||++|
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyV--aD-------s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd 632 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFI--SD-------SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN 632 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEE--EE-------CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe
Confidence 34567889999999976656665 44 345699999999886554443 246789999999
Q ss_pred ccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCcccc-----CCCCC--CccccccceEEEEecCCCcEEEEcc
Q psy14257 358 YNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGI-----PNCRP--EDNLWIGKNLYWVESNLDQIEVAKL 430 (841)
Q Consensus 358 ~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i-----~~~~~--~avdw~~~~LY~tD~~~~~I~v~~~ 430 (841)
.+++.|||+|..+++|+++++.++..+.+......+.+...+. ....| +++|..++.||++|..+++|.++++
T Consensus 633 ~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~ 712 (1057)
T PLN02919 633 AKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI 712 (1057)
T ss_pred CCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC
Confidence 9999999999999999999998877666654332221111110 01122 4566667999999999999999998
Q ss_pred CCceEEEEec--------------CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec---------
Q psy14257 431 SGQFRRTLIA--------------GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD--------- 487 (841)
Q Consensus 431 ~G~~~~~l~~--------------~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~--------- 487 (841)
.+....++.. ..+..|.||+++|..++||++|.. +++|.++++++.....+....
T Consensus 713 ~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 713 SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRALDLKTGGSRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEEEECCCCcEEEEEecccccCccccc
Confidence 7655444322 135789999999998899999988 789999999754443332100
Q ss_pred c-------cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC-----------CCCCcceEEEEe-c
Q psy14257 488 L-------LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH-----------DSLTHPFAIALF-E 548 (841)
Q Consensus 488 ~-------~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~-----------~~l~~P~gla~~-~ 548 (841)
. ....+..|.|+++|. +++||++|..+++|.++++++....++.... ..+..|.||++. +
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 001356899999995 5689999999999999999988777665421 245689999995 5
Q ss_pred CeEEEEeCCCCeEEEEeccCCcc
Q psy14257 549 NHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 549 ~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
|+||++|..+++|..++..+++.
T Consensus 870 G~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 GRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEECCCCEEEEEECCCCcc
Confidence 89999999999999999877764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-18 Score=206.48 Aligned_cols=225 Identities=17% Similarity=0.222 Sum_probs=164.2
Q ss_pred cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecC-CCcc---ccCCCCCCccccccceEEEEe
Q psy14257 344 VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGS-DSRV---GIPNCRPEDNLWIGKNLYWVE 419 (841)
Q Consensus 344 ~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~-~~~~---~i~~~~~~avdw~~~~LY~tD 419 (841)
+..++..|.||++|..++.||++|..+++|++++++|.....+......+. +... .+.....+++|..++.|||+|
T Consensus 563 ~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 563 LTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred ccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 345789999999999999999999999999999999875444322111110 0000 011112235555667899999
Q ss_pred cCCCcEEEEccCCceEEEEecC----------------CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 420 SNLDQIEVAKLSGQFRRTLIAG----------------DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 420 ~~~~~I~v~~~~G~~~~~l~~~----------------~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
..+++|.++++.+...+++... .+..|.+|+++|.+|.||+++.+ +++|++.+..+....++
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~--~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG--QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--CCeEEEEECCCCeEEEE
Confidence 9999999999988777766431 15689999999988999999988 78999998865433333
Q ss_pred EEecc---------cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC-------------------C
Q psy14257 484 VRVDL---------LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN-------------------H 535 (841)
Q Consensus 484 ~~~~~---------~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~-------------------~ 535 (841)
...+. ....+..|.||++++.+++||++|..+++|+++++++.....+... .
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 21100 0124678999999998889999999999999999986544433311 1
Q ss_pred CCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCc
Q psy14257 536 DSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 536 ~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
..+.+|.||++. +|.||++|+.+++|.+++..++.
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 135689999995 47899999999999999876554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-16 Score=163.10 Aligned_cols=229 Identities=21% Similarity=0.260 Sum_probs=157.2
Q ss_pred eeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEE
Q psy14257 252 IALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIE 331 (841)
Q Consensus 252 ~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~ 331 (841)
.++.|+.+.+. |||+|...++|+++++.++. ..++. +..|.|++++...+.+|+ ++. +.+.
T Consensus 3 Egp~~d~~~g~--l~~~D~~~~~i~~~~~~~~~----~~~~~--~~~~~G~~~~~~~g~l~v--~~~---------~~~~ 63 (246)
T PF08450_consen 3 EGPVWDPRDGR--LYWVDIPGGRIYRVDPDTGE----VEVID--LPGPNGMAFDRPDGRLYV--ADS---------GGIA 63 (246)
T ss_dssp EEEEEETTTTE--EEEEETTTTEEEEEETTTTE----EEEEE--SSSEEEEEEECTTSEEEE--EET---------TCEE
T ss_pred cceEEECCCCE--EEEEEcCCCEEEEEECCCCe----EEEEe--cCCCceEEEEccCCEEEE--EEc---------CceE
Confidence 46678876666 99999999999999987653 22333 334999999954445544 432 2555
Q ss_pred EEccCCCcccccccc-----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 332 KAGMHGENRSPLVTK-----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 332 ~~~~dG~~~~~l~~~-----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
+.+......+++... ++..|+.+++|++ ++||++|.......
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~-------------------------------- 110 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGAS-------------------------------- 110 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTT--------------------------------
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccc--------------------------------
Confidence 667665555555543 6788999999976 44666664321000
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC-----cE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH-----RS 481 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~-----~~ 481 (841)
. ...++|++++.+|+. +.+ ..++..|+||+++|.++.||+++.. ..+|++++++... ++
T Consensus 111 --~----------~~~g~v~~~~~~~~~-~~~-~~~~~~pNGi~~s~dg~~lyv~ds~--~~~i~~~~~~~~~~~~~~~~ 174 (246)
T PF08450_consen 111 --G----------IDPGSVYRIDPDGKV-TVV-ADGLGFPNGIAFSPDGKTLYVADSF--NGRIWRFDLDADGGELSNRR 174 (246)
T ss_dssp --C----------GGSEEEEEEETTSEE-EEE-EEEESSEEEEEEETTSSEEEEEETT--TTEEEEEEEETTTCCEEEEE
T ss_pred --c----------ccccceEEECCCCeE-EEE-ecCcccccceEECCcchheeecccc--cceeEEEeccccccceeeee
Confidence 0 000457777777443 233 3457899999999998899999988 7899999997433 34
Q ss_pred EEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe---cCeEEEEe
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF---ENHVYWTD 555 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~---~~~lY~td 555 (841)
++... ......|.||++|. .++||+++...++|.+++++|.....+... ..+|..+++- .+.||+|.
T Consensus 175 ~~~~~---~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 175 VFIDF---PGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPDGKLLREIELP---VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEE----SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETTSCEEEEEE-S---SSSEEEEEEESTTSSEEEEEE
T ss_pred eEEEc---CCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCCccEEEEEcCC---CCCEEEEEEECCCCCEEEEEe
Confidence 44442 12224699999995 789999999999999999999877777644 4589999994 37899985
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-16 Score=162.33 Aligned_cols=204 Identities=21% Similarity=0.250 Sum_probs=151.3
Q ss_pred CCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEc
Q psy14257 350 WPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAK 429 (841)
Q Consensus 350 ~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~ 429 (841)
+|+|+++|..++.|||+|...++|+++++++...+++.... +.|+ +++...+.||+++.. .+.+.+
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------~~G~------~~~~~~g~l~v~~~~--~~~~~d 66 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------PNGM------AFDRPDGRLYVADSG--GIAVVD 66 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS------EEEE------EEECTTSEEEEEETT--CEEEEE
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------CceE------EEEccCCEEEEEEcC--ceEEEe
Confidence 47899999999999999999999999999998766543222 1111 233334999999964 455558
Q ss_pred cCCceEEEEecC-----CCCCceeEEEcCCCCeEEEEecCCCC------CeEEEecCCCCCcEEEEEecccCCCCCCcee
Q psy14257 430 LSGQFRRTLIAG-----DMESPRAIALDPRFGLLFWTDWDSKA------PRIERCSMSGEHRSVIVRVDLLTSRGAWPNG 498 (841)
Q Consensus 430 ~~G~~~~~l~~~-----~l~~P~giavd~~~g~Ly~td~~~~~------~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~g 498 (841)
+.....+++... .+..|+++++|+. |.||+|+.+... ++|+|.+.+|+ .+.+.. .+..|+|
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~------~~~~pNG 138 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVAD------GLGFPNG 138 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEE------EESSEEE
T ss_pred cCCCcEEEEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCCCe-EEEEec------Ccccccc
Confidence 776655555543 5788999999986 889999865321 67999999944 333333 5789999
Q ss_pred EEEeccCCEEEEEeCCCCeEEEEEcCC--C---eeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 499 LTLDYQLTRIYWIDAKSDSIHTVTYDG--K---DHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 499 lalD~~~~~LYw~d~~~~~I~~~~~dG--~---~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
|+++++++.||++|...++|++++++. . .++++.........|.||+++ +|+||++.+..++|.++++. |+..
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 999999999999999999999999973 2 344554443333469999996 59999999999999999987 7766
Q ss_pred EEEe
Q psy14257 573 TLIQ 576 (841)
Q Consensus 573 ~~i~ 576 (841)
..+.
T Consensus 218 ~~i~ 221 (246)
T PF08450_consen 218 REIE 221 (246)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-10 Score=127.23 Aligned_cols=288 Identities=16% Similarity=0.148 Sum_probs=181.3
Q ss_pred CeEEEEEec--CCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC--ccccccc--c
Q psy14257 273 DKIYNATLI--GNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE--NRSPLVT--K 346 (841)
Q Consensus 273 ~~I~~~~~~--~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~--~~~~l~~--~ 346 (841)
+.|+++.++ .+.+..... ......|.-|++++.++.+|. +.... ...+.|..+..+.. .+..+.. .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~--~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~~ 84 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQT--VAEGENPSWLAVSPDGRRLYV--VNEGS----GDSGGVSSYRIDPDTGTLTLLNSVPS 84 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEE--EEESSSECCEEE-TTSSEEEE--EETTS----STTTEEEEEEEETTTTEEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCceEeee--ecCCCCCceEEEEeCCCEEEE--EEccc----cCCCCEEEEEECCCcceeEEeeeecc
Confidence 567777663 333222222 234668999999986655554 44321 14567777766543 3333332 2
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCC--ccEEE--EeeeeecCCC-ccccCCCCCCccccccceEEEEecC
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS--ERTVS--FNLEVLGSDS-RVGIPNCRPEDNLWIGKNLYWVESN 421 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~--~~~~~--~~~~~~~~~~-~~~i~~~~~~avdw~~~~LY~tD~~ 421 (841)
.-..|--|++|+.++.||++.+..+.|..++++.. -.... +.....+... .-..+..+.+.++..++.||++|.+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 45678899999999999999999999999988753 22221 1111111111 0011111123456677899999999
Q ss_pred CCcEEEEccCCce--E---EEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCc-EEEEEecccC---C
Q psy14257 422 LDQIEVAKLSGQF--R---RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHR-SVIVRVDLLT---S 491 (841)
Q Consensus 422 ~~~I~v~~~~G~~--~---~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~-~~i~~~~~~~---~ 491 (841)
.++|.+++++... . ..+....-..||.|+++|...++|++... .+.|..++++ .... +.+......+ .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~--s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL--SNTVSVFDYDPSDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEESCETTSC
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC--CCcEEEEeecccCCceeEEEEeeecccccc
Confidence 9999999997543 2 22222334689999999999999999976 6788888887 2222 2222211111 1
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC--eeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEE--e
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK--DHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRA--N 565 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~--~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~--~ 565 (841)
....|.+|++++++++||+++...+.|..++++.. ..+.+.........|.++++ .+.+||+++..++.|..+ +
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 22379999999999999999999999999998542 33332221112356999999 568999999998887644 5
Q ss_pred ccCCc
Q psy14257 566 KWNGS 570 (841)
Q Consensus 566 ~~~g~ 570 (841)
..+|.
T Consensus 323 ~~tG~ 327 (345)
T PF10282_consen 323 PDTGK 327 (345)
T ss_dssp TTTTE
T ss_pred CCCCc
Confidence 55655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-10 Score=124.39 Aligned_cols=290 Identities=12% Similarity=0.132 Sum_probs=184.4
Q ss_pred ceEEEEecCCCcEEEEccC--CceE--EEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLS--GQFR--RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~--G~~~--~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
..+|++....+.|.+++++ |+.. .++ .....|..|+++|...+||++.+. ...|..++++...........
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~- 76 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAES- 76 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeeee-
Confidence 4689998888999999985 4322 222 123679999999998999999875 567766666533332222210
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~ 564 (841)
.....|.+|++++.+++||.+....+.|..++++ |.....+... ....+|.++++. +.++|+++...+.|..+
T Consensus 77 --~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 77 --PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred --cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 2234799999999999999999888899988876 3222222111 124578888875 46899999888877666
Q ss_pred eccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecC
Q psy14257 565 NKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRP 644 (841)
Q Consensus 565 ~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~ 644 (841)
+..+..... +. ..
T Consensus 154 d~~~~g~l~------------------------------------~~-------------------------------~~ 166 (330)
T PRK11028 154 TLSDDGHLV------------------------------------AQ-------------------------------EP 166 (330)
T ss_pred EECCCCccc------------------------------------cc-------------------------------CC
Confidence 542211000 00 00
Q ss_pred CeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEccc--Cceeeeeeeeeeeecccccccc
Q psy14257 645 REIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVG--GQIQLVVDAVFEFYLTPLSKRS 722 (841)
Q Consensus 645 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 722 (841)
..+. + +. -..|..++|+|..+.+|+++...++|...+++. ...+. +..+
T Consensus 167 ~~~~-~-------------~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~-~~~~------------ 217 (330)
T PRK11028 167 AEVT-T-------------VE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC-VQTL------------ 217 (330)
T ss_pred Ccee-c-------------CC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE-EEEE------------
Confidence 0000 0 00 123567888899999999998889998888863 22111 1000
Q ss_pred cccCceEEEEeeC---CCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc--ceEEEEcCCCCCCCcCCCceEEEEe
Q psy14257 723 SIVGGQIQLVVDA---GISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE--YQTTILSNESNDTSTLSKISSIAVW 797 (841)
Q Consensus 723 ~~~~~~~~~i~~~---~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~--~~~~~~~~~~~~~~~l~~p~~iavd 797 (841)
..+.. +-..|.+|++++.++.||.+ +...+.|.+++++-. ..+.+..- . ....|++|+++
T Consensus 218 --------~~~p~~~~~~~~~~~i~~~pdg~~lyv~--~~~~~~I~v~~i~~~~~~~~~~~~~-~----~~~~p~~~~~~ 282 (330)
T PRK11028 218 --------DMMPADFSDTRWAADIHITPDGRHLYAC--DRTASLISVFSVSEDGSVLSFEGHQ-P----TETQPRGFNID 282 (330)
T ss_pred --------ecCCCcCCCCccceeEEECCCCCEEEEe--cCCCCeEEEEEEeCCCCeEEEeEEE-e----ccccCCceEEC
Confidence 00001 11245679999999999999 567789999988532 22222221 0 02589999999
Q ss_pred CCCCeEEEEecCCCcceEEEEecCCC
Q psy14257 798 PVKGKMFWSNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 798 ~~~g~lyw~d~~~~~~~I~~~~~dG~ 823 (841)
|...+||.+..+.+ +|....+|..
T Consensus 283 ~dg~~l~va~~~~~--~v~v~~~~~~ 306 (330)
T PRK11028 283 HSGKYLIAAGQKSH--HISVYEIDGE 306 (330)
T ss_pred CCCCEEEEEEccCC--cEEEEEEcCC
Confidence 99999999998664 6777776644
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-10 Score=127.84 Aligned_cols=284 Identities=12% Similarity=0.135 Sum_probs=179.1
Q ss_pred eEEEecCCCeEEEEEecC-CcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCc-ccc
Q psy14257 265 VFWTDVIDDKIYNATLIG-NSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN-RSP 342 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~-~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~-~~~ 342 (841)
+|.++...+.|...++.. |.+...++ +. ....|..+++++.++.+|+ +.+ ..++|..++.++.. ...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~-~~-~~~~~~~l~~spd~~~lyv--~~~-------~~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQV-VD-VPGQVQPMVISPDKRHLYV--GVR-------PEFRVLSYRIADDGALTF 72 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeE-Ee-cCCCCccEEECCCCCEEEE--EEC-------CCCcEEEEEECCCCceEE
Confidence 889988888898888853 33211122 22 2357899999987766665 332 23578766665321 111
Q ss_pred ccc-cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec--CCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEe
Q psy14257 343 LVT-KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD--GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVE 419 (841)
Q Consensus 343 l~~-~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld--G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD 419 (841)
+.. .....|.+|++++++++||.+....+.|..++++ |...+.+.... +.+.....+++..++.||+++
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------GLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------CCCcccEeEeCCCCCEEEEee
Confidence 111 1234799999999999999999988999888886 32222221110 111122234566668999999
Q ss_pred cCCCcEEEEccCCce-EE-----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC--CCcEEEEEecccCC
Q psy14257 420 SNLDQIEVAKLSGQF-RR-----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG--EHRSVIVRVDLLTS 491 (841)
Q Consensus 420 ~~~~~I~v~~~~G~~-~~-----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG--~~~~~i~~~~~~~~ 491 (841)
...++|.+++++... .. .+....-..|++++++|...+||+++.. .++|...+++. ...+.+......+.
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 999999999986421 10 0111112579999999999999999976 57777777752 22233322111111
Q ss_pred ---CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEE
Q psy14257 492 ---RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 492 ---~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~ 564 (841)
.-.+|.++++++.+++||+++...+.|..++++ +...+.+.... ....|.++++ .+.+||++....+.|..+
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 224667899999999999998888889888874 33333222211 1246788887 467999999877766544
Q ss_pred --eccCCc
Q psy14257 565 --NKWNGS 570 (841)
Q Consensus 565 --~~~~g~ 570 (841)
+..+|.
T Consensus 302 ~~~~~~g~ 309 (330)
T PRK11028 302 EIDGETGL 309 (330)
T ss_pred EEcCCCCc
Confidence 444443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-09 Score=120.95 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=181.9
Q ss_pred CcEEEEccC---CceEEEEecCCCCCceeEEEcCCCCeEEEEecCC-CCCeEEEecCCCC-Cc-EEEEEecccCCCCCCc
Q psy14257 423 DQIEVAKLS---GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS-KAPRIERCSMSGE-HR-SVIVRVDLLTSRGAWP 496 (841)
Q Consensus 423 ~~I~v~~~~---G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~-~~~~I~r~~ldG~-~~-~~i~~~~~~~~~~~~P 496 (841)
+.|.++++| |+....-.......|.-|+++|.+++||.+.... ..+.|..+.++.. .. +.+... ......|
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~---~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV---PSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE---EESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee---ccCCCCc
Confidence 667777773 2222211122457899999999999999999753 3678888877654 33 333221 1256789
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCC--CeeEE--EEcC--------CCCCCcceEEEEe--cCeEEEEeCCCCeEE
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDG--KDHHV--VLSN--------HDSLTHPFAIALF--ENHVYWTDWRTNSVI 562 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG--~~~~~--i~~~--------~~~l~~P~gla~~--~~~lY~td~~~~~i~ 562 (841)
..|++|+.++.||+++...+.|..++++. ..... +... .....||..+.+. +.+||++|.+..+|.
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 99999999999999999999998888864 32222 1210 1234688888884 468999998888776
Q ss_pred EEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee
Q psy14257 563 RANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS 642 (841)
Q Consensus 563 ~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~ 642 (841)
.++....... |..
T Consensus 170 ~~~~~~~~~~---------------------------------------------------l~~---------------- 182 (345)
T PF10282_consen 170 VYDIDDDTGK---------------------------------------------------LTP---------------- 182 (345)
T ss_dssp EEEE-TTS-T---------------------------------------------------EEE----------------
T ss_pred EEEEeCCCce---------------------------------------------------EEE----------------
Confidence 6653211100 000
Q ss_pred cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEccc--Cceeeeeeeeeeeecccccc
Q psy14257 643 RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVG--GQIQLVVDAVFEFYLTPLSK 720 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 720 (841)
.. .+.++.-..|..++|++..+.+|+++..+++|..++++. ...+.
T Consensus 183 ----~~-------------~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--------------- 230 (345)
T PF10282_consen 183 ----VD-------------SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE--------------- 230 (345)
T ss_dssp ----EE-------------EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE---------------
T ss_pred ----ee-------------ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE---------------
Confidence 00 011222245788999999999999999999999998882 22111
Q ss_pred cccccCceEEEEee-----CCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc--ceEEE--E-cCCCCCCCcCCC
Q psy14257 721 RSSIVGGQIQLVVD-----AGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE--YQTTI--L-SNESNDTSTLSK 790 (841)
Q Consensus 721 ~~~~~~~~~~~i~~-----~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~--~~~~~--~-~~~~~~~~~l~~ 790 (841)
.+.+-. .+...|.+|+|++.++.||++ +...+.|.+++++.. .-+.+ + .. ...
T Consensus 231 --------~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs--nr~~~sI~vf~~d~~~g~l~~~~~~~~~-------G~~ 293 (345)
T PF10282_consen 231 --------IQTISTLPEGFTGENAPAEIAISPDGRFLYVS--NRGSNSISVFDLDPATGTLTLVQTVPTG-------GKF 293 (345)
T ss_dssp --------EEEEESCETTSCSSSSEEEEEE-TTSSEEEEE--ECTTTEEEEEEECTTTTTEEEEEEEEES-------SSS
T ss_pred --------EEEeeeccccccccCCceeEEEecCCCEEEEE--eccCCEEEEEEEecCCCceEEEEEEeCC-------CCC
Confidence 111110 112368999999999999999 568899999999653 11111 1 12 467
Q ss_pred ceEEEEeCCCCeEEEEecCCCcceEEEEecCC
Q psy14257 791 ISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG 822 (841)
Q Consensus 791 p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG 822 (841)
|++|+++|...+||.+....+ +|....+|.
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~--~v~vf~~d~ 323 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSN--TVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTT--EEEEEEEET
T ss_pred ccEEEEeCCCCEEEEEecCCC--eEEEEEEeC
Confidence 999999999999999999885 577766653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=130.59 Aligned_cols=214 Identities=18% Similarity=0.237 Sum_probs=147.1
Q ss_pred cccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC
Q psy14257 342 PLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN 421 (841)
Q Consensus 342 ~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~ 421 (841)
.+......+..|.++|.+++.|||+|...++|.+.++.....+++.....+.....+ -..+.|..++.+
T Consensus 18 ~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~-----------d~~g~Lv~~~~g 86 (307)
T COG3386 18 TLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALI-----------DAGGRLIACEHG 86 (307)
T ss_pred eEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceee-----------cCCCeEEEEccc
Confidence 344557788999999999999999999999999999986555555433322111110 012666666654
Q ss_pred CCcEEEEccCCceEEEEec----CCCCCceeEEEcCCCCeEEEEecC---------CCCCeEEEecCCCCCcEEEEEecc
Q psy14257 422 LDQIEVAKLSGQFRRTLIA----GDMESPRAIALDPRFGLLFWTDWD---------SKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~----~~l~~P~giavd~~~g~Ly~td~~---------~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
...+.. -.|..++.+.. ..+.+|+.+.++|. |.+|+++.+ ...+.|||++.+|...+.+.
T Consensus 87 ~~~~~~--~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~---- 159 (307)
T COG3386 87 VRLLDP--DTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD---- 159 (307)
T ss_pred cEEEec--cCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec----
Confidence 333322 22333233322 12578999999987 889999877 24568999999766555553
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC---CC--eeEEEEcCCCCCCcceEEEEec-CeEE-EEeCCCCeE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD---GK--DHHVVLSNHDSLTHPFAIALFE-NHVY-WTDWRTNSV 561 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d---G~--~~~~i~~~~~~l~~P~gla~~~-~~lY-~td~~~~~i 561 (841)
..+..||||+++++++.||++|+..++|++++++ |. .++..+.....-..|.|++++. |+|| ++-|...+|
T Consensus 160 --~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 160 --DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred --CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 3588999999999999999999999999999988 31 2222222211235799999965 6777 555666699
Q ss_pred EEEeccCCcceEEEe
Q psy14257 562 IRANKWNGSDVTLIQ 576 (841)
Q Consensus 562 ~~~~~~~g~~~~~i~ 576 (841)
.+.++. |+....+.
T Consensus 238 ~~~~pd-G~l~~~i~ 251 (307)
T COG3386 238 VRFNPD-GKLLGEIK 251 (307)
T ss_pred EEECCC-CcEEEEEE
Confidence 999987 77665544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=122.68 Aligned_cols=238 Identities=19% Similarity=0.220 Sum_probs=151.9
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
..+--|+.+.+. |||+|+..++|++.++..|. . .++...-..+.++.+|. .+.++-++- .+
T Consensus 27 gEgP~w~~~~~~--L~w~DI~~~~i~r~~~~~g~---~-~~~~~p~~~~~~~~~d~---~g~Lv~~~~----------g~ 87 (307)
T COG3386 27 GEGPVWDPDRGA--LLWVDILGGRIHRLDPETGK---K-RVFPSPGGFSSGALIDA---GGRLIACEH----------GV 87 (307)
T ss_pred ccCccCcCCCCE--EEEEeCCCCeEEEecCCcCc---e-EEEECCCCcccceeecC---CCeEEEEcc----------cc
Confidence 345567777666 99999999999999887553 2 23333333466777773 333332221 33
Q ss_pred EEEccC-CCccccccc----cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 331 EKAGMH-GENRSPLVT----KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 331 ~~~~~d-G~~~~~l~~----~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
.+.+.+ |..++.+.. .+..+||.+.+|++ +.+|+.|..... .+..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~------~~~~----------------------- 137 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFD------LGKS----------------------- 137 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCCccc------cCcc-----------------------
Confidence 333323 333233322 26789999999987 788888875410 0000
Q ss_pred CccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC---CC--Cc
Q psy14257 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS---GE--HR 480 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld---G~--~~ 480 (841)
.....+++++++.+|...+ ++...+..|+|||++|++..||++|.. ..+|+|+.++ |. ++
T Consensus 138 ------------~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~tly~aDT~--~~~i~r~~~d~~~g~~~~~ 202 (307)
T COG3386 138 ------------EERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGKTLYVADTP--ANRIHRYDLDPATGPIGGR 202 (307)
T ss_pred ------------ccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCCCEEEEEeCC--CCeEEEEecCcccCccCCc
Confidence 0011234444554444433 444558899999999999999999987 7899999997 32 22
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEE-EeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec---CeEEEEeC
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYW-IDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE---NHVYWTDW 556 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw-~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~---~~lY~td~ 556 (841)
...+... ..-..|.|+++| .++.||. +-....+|.+++++|.....+.-. ...|..+++-+ +.||+|..
T Consensus 203 ~~~~~~~---~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP---~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 203 RGFVDFD---EEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP---VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ceEEEcc---CCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEECC---CCCCccceEeCCCcCEEEEEec
Confidence 2233210 233689999999 5788884 444445999999999888777643 25677788765 89999986
Q ss_pred CCC
Q psy14257 557 RTN 559 (841)
Q Consensus 557 ~~~ 559 (841)
..+
T Consensus 276 ~~~ 278 (307)
T COG3386 276 RSG 278 (307)
T ss_pred CCC
Confidence 653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-10 Score=123.87 Aligned_cols=267 Identities=21% Similarity=0.270 Sum_probs=160.3
Q ss_pred EEEEecc--ccceeeecccccCCcceeEEEecC-----------C-CeEEEEEecCC-cccceEEEEeCCCCCccceEEe
Q psy14257 241 VIALISS--LKNTIALDFYYTPTANMVFWTDVI-----------D-DKIYNATLIGN-SLSNIDVVVQTGLSTAEGLAVD 305 (841)
Q Consensus 241 ~~~l~~~--~~~~~avd~~~~~~~~~lyw~d~~-----------~-~~I~~~~~~~~-~~~~~~~~~~~~l~~p~giavD 305 (841)
++.++.. +.++++|.||.+ ++ ||+++.. . ++|++..-.++ ......+++..++..|.||++.
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~-G~--l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~ 80 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDER-GR--LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA 80 (367)
T ss_pred EEEEECCCccCCCceeeECCC-CC--EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe
Confidence 4445543 788999999876 66 9999742 2 38888764322 2223446778889999999997
Q ss_pred eecCceeEEEeeecCCCCCCCCCCEEEE-ccCCC-----cccccccc-------CcCCCceEEEEccCCEEEEEeCCCCe
Q psy14257 306 WIGKNLYMFWAFWSLSPSNSSDGGIEKA-GMHGE-----NRSPLVTK-------NIQWPSSLVIDYNQDILYWCDSHLNT 372 (841)
Q Consensus 306 ~~~~~~y~~~td~~~~~~~~~~~~I~~~-~~dG~-----~~~~l~~~-------~~~~P~glavD~~~~~lYwaD~~~~~ 372 (841)
+.+ +|+ ++ .++|.++ +.+|. .+++++.. ..+.|++|+++++ ++||+++.....
T Consensus 81 ~~G--lyV--~~---------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G~~~~ 146 (367)
T TIGR02604 81 VGG--VYV--AT---------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHGNTLA 146 (367)
T ss_pred cCC--EEE--eC---------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC-CCEEEecccCCC
Confidence 533 555 32 2368777 44442 22233321 1355889999975 689998864311
Q ss_pred EEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEc
Q psy14257 373 VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALD 452 (841)
Q Consensus 373 I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd 452 (841)
-.. ...+. .+ .. .....+.|.+++++|+..+++ ..++.+|.||++|
T Consensus 147 ~~~-~~~~~------------~~-----------------~~---~~~~~g~i~r~~pdg~~~e~~-a~G~rnp~Gl~~d 192 (367)
T TIGR02604 147 SKV-TRPGT------------SD-----------------ES---RQGLGGGLFRYNPDGGKLRVV-AHGFQNPYGHSVD 192 (367)
T ss_pred cee-ccCCC------------cc-----------------Cc---ccccCceEEEEecCCCeEEEE-ecCcCCCccceEC
Confidence 000 00000 00 00 001246788999998877654 4679999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEecCC--C----------CCc---------EE-----------EEEecccCCCCCCceeEE
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCSMS--G----------EHR---------SV-----------IVRVDLLTSRGAWPNGLT 500 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ld--G----------~~~---------~~-----------i~~~~~~~~~~~~P~gla 500 (841)
+ .|.||++|.+ .+...++..- | ... .. +............|.|++
T Consensus 193 ~-~G~l~~tdn~--~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~ 269 (367)
T TIGR02604 193 S-WGDVFFCDND--DPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIA 269 (367)
T ss_pred C-CCCEEEEccC--CCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEE
Confidence 8 5899999865 3333333321 1 000 00 000000001223689999
Q ss_pred Ee-------ccCCEEEEEeCCCCeEEEEEcC--CCee----EEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeE
Q psy14257 501 LD-------YQLTRIYWIDAKSDSIHTVTYD--GKDH----HVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSV 561 (841)
Q Consensus 501 lD-------~~~~~LYw~d~~~~~I~~~~~d--G~~~----~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i 561 (841)
+- ...+.||+++...++|.++.++ |... ..++.......+|..|++ .+|.||++||....|
T Consensus 270 ~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~~i 344 (367)
T TIGR02604 270 FYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDRGI 344 (367)
T ss_pred EeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEeccCcc
Confidence 86 3458999999999999999876 4322 123333223357888888 478999999876443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-09 Score=115.54 Aligned_cols=252 Identities=15% Similarity=0.151 Sum_probs=176.6
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
.|.++++++.+.++|+.-.. ...|...+..-.........+...|.|++++..+.++|+.+...+.|..++
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~---------~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSG---------SNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCceeEEcCccCEEEEEeec---------CceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEc
Confidence 89999999888777775321 113444333311122222334478999999999999999999999999999
Q ss_pred ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCC
Q psy14257 378 VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455 (841)
Q Consensus 378 ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~ 455 (841)
.+............ . ...+++++.++.+|+++. .+++|.+++.........+..+ ..|.+++++|..
T Consensus 103 ~~~~~~~~~~~vG~--~--------P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P~~~a~~p~g 171 (381)
T COG3391 103 TATNTVLGSIPVGL--G--------PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTPTGVAVDPDG 171 (381)
T ss_pred CcccceeeEeeecc--C--------CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCcceEEECCCC
Confidence 54443333222221 1 123478888999999999 4789999988755443334333 378999999999
Q ss_pred CeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEc
Q psy14257 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 456 g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~ 533 (841)
.++|+++.. .+.|...+..+..... ............|.++++++.+.++|+++..+ +.+.+++...........
T Consensus 172 ~~vyv~~~~--~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 172 NKVYVTNSD--DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CeEEEEecC--CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 999999966 7889999877655442 11100114677899999999999999999887 589999888766655422
Q ss_pred CCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 534 NHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 534 ~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
..+.+ .|.++++ .+.++|+++...+.+..++..+.....
T Consensus 249 ~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 249 PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 33345 7888888 468899998888888888765544433
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-08 Score=102.80 Aligned_cols=294 Identities=17% Similarity=0.217 Sum_probs=188.8
Q ss_pred eEEEecC---CCeEEEEEecC--CcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-
Q psy14257 265 VFWTDVI---DDKIYNATLIG--NSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE- 338 (841)
Q Consensus 265 lyw~d~~---~~~I~~~~~~~--~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~- 338 (841)
+|+-... ...|++..++. |.+...+ +...+.+|.-|++++..+.||...-+ ...++|..+..|..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~--~v~~~~nptyl~~~~~~~~LY~v~~~-------~~~ggvaay~iD~~~ 75 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQ--LVAELGNPTYLAVNPDQRHLYVVNEP-------GEEGGVAAYRIDPDD 75 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhh--hccccCCCceEEECCCCCEEEEEEec-------CCcCcEEEEEEcCCC
Confidence 5554443 56788887763 2322222 33457789999999988888875432 22567777776653
Q ss_pred cccccccc---CcCCCceEEEEccCCEEEEEeCCCCeEEEEEe--cCCccEEEEeeeeecCC--CccccCCCCCCccccc
Q psy14257 339 NRSPLVTK---NIQWPSSLVIDYNQDILYWCDSHLNTVESVRV--DGSERTVSFNLEVLGSD--SRVGIPNCRPEDNLWI 411 (841)
Q Consensus 339 ~~~~l~~~---~~~~P~glavD~~~~~lYwaD~~~~~I~~~~l--dG~~~~~~~~~~~~~~~--~~~~i~~~~~~avdw~ 411 (841)
.+-+++.. .-..|.-+++|.+++.||.+.+..+.|.+..+ +|.-..++-...-.++. ..-.-+.++...++..
T Consensus 76 G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 76 GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred CeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 22333322 33445889999999999999999999988776 46544433221111110 0000111233456777
Q ss_pred cceEEEEecCCCcEEEEccC-CceEE---EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC--CcEEEEE
Q psy14257 412 GKNLYWVESNLDQIEVAKLS-GQFRR---TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE--HRSVIVR 485 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~-G~~~~---~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~--~~~~i~~ 485 (841)
++.|.++|-+.++|.+++++ |.... ..+ ..-..||-|+++|...+.|....- +++|.....++. ..+.+-.
T Consensus 156 ~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL--~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 156 GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNEL--NSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEecc--CCEEEEEEEcCCCceEEEeee
Confidence 88999999999999999986 33221 112 223679999999999999998855 678888888764 2222222
Q ss_pred ecccCC---CCCCceeEEEeccCCEEEEEeCCCCeEEEE--EcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCC
Q psy14257 486 VDLLTS---RGAWPNGLTLDYQLTRIYWIDAKSDSIHTV--TYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRT 558 (841)
Q Consensus 486 ~~~~~~---~~~~P~glalD~~~~~LYw~d~~~~~I~~~--~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~ 558 (841)
....+. +-.+-..|.|.+.++.||.++-+.+.|..+ +.+|+....+.........|.++.+ .+++|+++...+
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 111122 334566788999999999999888876665 5566656555444333445777776 568899998776
Q ss_pred Ce--EEEEeccCCc
Q psy14257 559 NS--VIRANKWNGS 570 (841)
Q Consensus 559 ~~--i~~~~~~~g~ 570 (841)
.. |+++++.+|.
T Consensus 313 d~i~vf~~d~~TG~ 326 (346)
T COG2706 313 DNITVFERDKETGR 326 (346)
T ss_pred CcEEEEEEcCCCce
Confidence 65 4577777775
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.6e-09 Score=119.68 Aligned_cols=225 Identities=21% Similarity=0.297 Sum_probs=147.6
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc--cCcCCCceEEEEccCCEEEEEeCCCCeE
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT--KNIQWPSSLVIDYNQDILYWCDSHLNTV 373 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~--~~~~~P~glavD~~~~~lYwaD~~~~~I 373 (841)
|-.|..+|..+.| -+|+ -|. +-|.|+..||+....+-. +....--=||+|+..+.||++|+..++|
T Consensus 364 L~aPvala~a~DG-Sl~V--GDf---------NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv 431 (1899)
T KOG4659|consen 364 LFAPVALAYAPDG-SLIV--GDF---------NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQV 431 (1899)
T ss_pred eeceeeEEEcCCC-cEEE--ccc---------hheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceE
Confidence 3357777776543 4443 332 379999999986655432 2334445699999999999999999999
Q ss_pred EEEE-ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEc
Q psy14257 374 ESVR-VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALD 452 (841)
Q Consensus 374 ~~~~-ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd 452 (841)
+|+. +.++..+ .+.+++..++..-+|.. +.+ =||.. .....|..|+|||||
T Consensus 432 ~rv~sl~~~d~~--~N~evvaG~Ge~Clp~d----------------------esC-GDGal---A~dA~L~~PkGIa~d 483 (1899)
T KOG4659|consen 432 WRVSSLEPQDSR--NNYEVVAGDGEVCLPAD----------------------ESC-GDGAL---AQDAQLIFPKGIAFD 483 (1899)
T ss_pred EEeccCCccccc--cCeeEEeccCcCccccc----------------------ccc-Ccchh---cccceeccCCceeEc
Confidence 9984 4443221 11122222221111100 000 01211 112347889999999
Q ss_pred CCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec-------------ccCCCCCCceeEEEeccCCEEEEEeCCCCeEE
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD-------------LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIH 519 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~-------------~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~ 519 (841)
. .|.||++| ...|.+++-+|--.+.+.... +....+.||+.|||||-.+.||+.| ++.|.
T Consensus 484 k-~g~lYfaD----~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvl 556 (1899)
T KOG4659|consen 484 K-MGNLYFAD----GTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVL 556 (1899)
T ss_pred c-CCcEEEec----ccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEE
Confidence 5 59999999 458888888876555553311 1123678999999999999999999 57899
Q ss_pred EEEcCCCeeEEEEcC------------------CCCCCcceEEEE-ecCeEEEEeCCCCeEEEEeccC
Q psy14257 520 TVTYDGKDHHVVLSN------------------HDSLTHPFAIAL-FENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 520 ~~~~dG~~~~~i~~~------------------~~~l~~P~gla~-~~~~lY~td~~~~~i~~~~~~~ 568 (841)
+++.++.-+ ++... +..+..|.+|++ ..|-||+++....+|-|+.+.+
T Consensus 557 rit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~ 623 (1899)
T KOG4659|consen 557 RITVVHRVR-IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLS 623 (1899)
T ss_pred EEccCccEE-EEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEec
Confidence 999888755 33222 122344788998 6799999999998888887654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-08 Score=112.61 Aligned_cols=268 Identities=15% Similarity=0.164 Sum_probs=182.0
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
.+..+.+...... +|+++...+.+..++.... ..+.....+...|.|+++.+.+.++|+.-. ..+.
T Consensus 32 ~~~~v~~~~~g~~--~~v~~~~~~~~~~~~~~~n---~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~---------~~~~ 97 (381)
T COG3391 32 GPGGVAVNPDGTQ--VYVANSGSNDVSVIDATSN---TVTQSLSVGGVYPAGVAVNPAGNKVYVTTG---------DSNT 97 (381)
T ss_pred CCceeEEcCccCE--EEEEeecCceeeecccccc---eeeeeccCCCccccceeeCCCCCeEEEecC---------CCCe
Confidence 4555555554334 9999888776655543211 222223444478999999999988988532 3568
Q ss_pred EEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 330 I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
|...+.........+..+. .|.++++|++++.+|+++. .+++|..++.............. .+ . .++
T Consensus 98 v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P--~------~~a 166 (381)
T COG3391 98 VSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP--T------GVA 166 (381)
T ss_pred EEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc--c------eEE
Confidence 8888855443333332222 8999999999999999999 47899998887665544422221 11 1 236
Q ss_pred cccccceEEEEecCCCcEEEEccCCceEEE-E---ecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSGQFRRT-L---IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G~~~~~-l---~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
++..+..+|+++...++|.+++.++..... - .......|.++++++...++|+++.......+.+.+.........
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 777788999999999999999988776543 0 112357899999999999999999873336888888765544433
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC-CCCCcceEEEE
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH-DSLTHPFAIAL 546 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~-~~l~~P~gla~ 546 (841)
.. ....+ +|.++++++.+..+|+++...+.+..++.....+....... .....|..+++
T Consensus 247 ~~---~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~ 306 (381)
T COG3391 247 DL---PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAI 306 (381)
T ss_pred cc---ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccc
Confidence 11 01455 89999999999999999998899999998776555443321 11223555554
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-09 Score=120.30 Aligned_cols=338 Identities=17% Similarity=0.186 Sum_probs=203.8
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecC-CCCCcEEEEE---ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSM-SGEHRSVIVR---VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~l-dG~~~~~i~~---~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~ 520 (841)
--.||.--.+++++|.++ .++|....| ||-.|.+--. .......+..|..||.-+ .|.||+-|. +.|++
T Consensus 316 ~~~gIl~kGnG~n~~it~----~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~-DGSl~VGDf--NyIRR 388 (1899)
T KOG4659|consen 316 IVNGILEKGNGGNRLITE----EPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAP-DGSLIVGDF--NYIRR 388 (1899)
T ss_pred cccCeEEecCCcceEeec----CCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcC-CCcEEEccc--hheee
Confidence 345666666678899988 456555555 6655433211 000113677899999985 689999995 78999
Q ss_pred EEcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEeccCCcce----EEEecccCCCceeccCCcccCC
Q psy14257 521 VTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDV----TLIQRTLTQPFIYVNGVVKKSP 594 (841)
Q Consensus 521 ~~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~~~~g~~~----~~i~~~~~~p~~~h~qp~~~n~ 594 (841)
+..||+-+.++--+.....|-+-||+ -+|.||++|..++.|+|+.-..+++. .++.....+ --|....
T Consensus 389 I~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~-----Clp~des- 462 (1899)
T KOG4659|consen 389 ISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEV-----CLPADES- 462 (1899)
T ss_pred ecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcC-----ccccccc-
Confidence 99999977766444333457788888 47999999999999999976554332 222211100 0011111
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCC-------CccccceeecC-
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHP-------YYHTIPTISIP- 666 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~-------~~~~~~~~~~~- 666 (841)
|.. |+ + ...++-.-|.|.... ..-+|.+++...||.|+-++- .+..-++++-.
T Consensus 463 CGD--Ga------l--A~dA~L~~PkGIa~d---------k~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~ 523 (1899)
T KOG4659|consen 463 CGD--GA------L--AQDAQLIFPKGIAFD---------KMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQ 523 (1899)
T ss_pred cCc--ch------h--cccceeccCCceeEc---------cCCcEEEecccEEEEeccCceEEEeccCCCCccCcccccc
Confidence 222 10 0 001222223332222 235688899999999986532 11111222211
Q ss_pred -------CCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccccccc-ccccCceEEEEeeCCCC
Q psy14257 667 -------QVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKR-SSIVGGQIQLVVDAGIS 738 (841)
Q Consensus 667 -------~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 738 (841)
.+.=|..|++||..+.+|+.| ++-|.|+..++... ++ .-.|+-=. +.+..+......-+.+.
T Consensus 524 ~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~--Ii------~GrP~hC~~a~~t~~~skla~H~tl~ 593 (1899)
T KOG4659|consen 524 ITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVR--II------LGRPTHCDLANATSSASKLADHRTLL 593 (1899)
T ss_pred ccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEE--EE------cCCccccccCCCchhhhhhhhhhhhh
Confidence 234588999999999999999 79999999887551 11 11111000 01122222222234566
Q ss_pred CcceeEEeecCCcEEEEecCC-CCCeEEEEecCCcceEEEEc-------------------CCCCCCCcCCCceEEEEeC
Q psy14257 739 HPSGLAIDWIAQNMFIAVSSP-TQSKIVVCNLEGEYQTTILS-------------------NESNDTSTLSKISSIAVWP 798 (841)
Q Consensus 739 ~p~glAvD~~~~~LYw~~~~~-~~~~I~v~~l~g~~~~~~~~-------------------~~~~~~~~l~~p~~iavd~ 798 (841)
.++.|||... +.||++++|. .-++|+++..||+.- ++.. +.....+.|..|.++||.|
T Consensus 594 ~~r~Iavg~~-G~lyvaEsD~rriNrvr~~~tdg~i~-ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsP 671 (1899)
T KOG4659|consen 594 IQRDIAVGTD-GALYVAESDGRRINRVRKLSTDGTIS-ILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSP 671 (1899)
T ss_pred hhhceeecCC-ceEEEEeccchhhhheEEeccCceEE-EecCCCCCCCcccccCCccccccchhhhccccCCcceEEECC
Confidence 7899999966 5899998765 335677777888532 1111 1133445688999999999
Q ss_pred CCCeEEEEecCCCcceEE-----EEecCCCceEEEe
Q psy14257 799 VKGKMFWSNVTKQVVTIE-----MAFMDGTKRETVV 829 (841)
Q Consensus 799 ~~g~lyw~d~~~~~~~I~-----~~~~dG~~~~~l~ 829 (841)
. |-+|.+|.++- ||. ++.+||++--.+.
T Consensus 672 d-g~v~IAD~gN~--rIr~Vs~~~~~~~~sr~YEi~ 704 (1899)
T KOG4659|consen 672 D-GDVIIADSGNS--RIRKVSARMAKYDGSRTYEIT 704 (1899)
T ss_pred C-CcEEEecCCch--hhhhhhhcccccCCCceeecc
Confidence 6 99999999973 444 3456776544443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-07 Score=98.14 Aligned_cols=290 Identities=13% Similarity=0.084 Sum_probs=168.5
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+++|++....+.|.+.+++.......+.. ...|++++++|.++.||.+... ...|...+++.......+. .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~~~~~l~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~------~ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQRPRGITLSKDGKLLYVCASD--SDTIQVIDLATGEVIGTLP------S 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-CCCCCceEECCCCCEEEEEECC--CCeEEEEECCCCcEEEecc------C
Confidence 35788888888999988864333223332 3568999999988889988755 5788888876543322222 2
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cC-eEEEEeCCCCeEEEEeccCCc
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-EN-HVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~-~lY~td~~~~~i~~~~~~~g~ 570 (841)
...|..+++++.++.||.+....+.|..+++........... -..|.++++. ++ .++++......+..++..+++
T Consensus 72 ~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 72 GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV---GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 234678999988888998877678999999876433222221 1246788874 34 444444333334444543332
Q ss_pred ceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee--cCCeEE
Q psy14257 571 DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS--RPREIR 648 (841)
Q Consensus 571 ~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~--~~~~i~ 648 (841)
....+... .. |....+.+| ..+|+++ ....|+
T Consensus 149 ~~~~~~~~-------------~~-------------------------~~~~~~s~d--------g~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 149 IVDNVLVD-------------QR-------------------------PRFAEFTAD--------GKELWVSSEIGGTVS 182 (300)
T ss_pred EEEEEEcC-------------CC-------------------------ccEEEECCC--------CCEEEEEcCCCCEEE
Confidence 22111100 00 000011111 1122222 123344
Q ss_pred EEecCCCCccccceee--c----CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccc
Q psy14257 649 GVDLEHPYYHTIPTIS--I----PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRS 722 (841)
Q Consensus 649 ~~~l~~~~~~~~~~~~--~----~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 722 (841)
.+++..... ...++ . +....+.+++|++..+.+|++....++|..+++....
T Consensus 183 i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-------------------- 240 (300)
T TIGR03866 183 VIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-------------------- 240 (300)
T ss_pred EEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc--------------------
Confidence 444432211 00000 0 0112456789999999999987667788888876433
Q ss_pred cccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeC
Q psy14257 723 SIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWP 798 (841)
Q Consensus 723 ~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~ 798 (841)
....+. .-..|.+|++.+.++.||.+ ....++|.++++++.....-+.. -..|.+||+.|
T Consensus 241 ------~~~~~~-~~~~~~~~~~~~~g~~l~~~--~~~~~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~~~ 300 (300)
T TIGR03866 241 ------VLDYLL-VGQRVWQLAFTPDEKYLLTT--NGVSNDVSVIDVAALKVIKSIKV-------GRLPWGVVVRP 300 (300)
T ss_pred ------EEEEEE-eCCCcceEEECCCCCEEEEE--cCCCCeEEEEECCCCcEEEEEEc-------ccccceeEeCC
Confidence 111111 12368899999999999998 44578899999987654333332 36899999865
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-07 Score=101.14 Aligned_cols=277 Identities=13% Similarity=0.164 Sum_probs=166.5
Q ss_pred eEEEecCC----CeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-CCc
Q psy14257 265 VFWTDVID----DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GEN 339 (841)
Q Consensus 265 lyw~d~~~----~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~ 339 (841)
+|++|... ++|++++.+.+. ....+..+ ..|+++ +.+.++.+|+.-+.+.-.........|..++.. ++.
T Consensus 15 v~V~d~~~~~~~~~v~ViD~~~~~---v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 15 VYVLDPGHFAATTQVYTIDGEAGR---VLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred EEEECCcccccCceEEEEECCCCE---EEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 88888773 788888766542 23334444 389996 898888888865533221112234578888864 444
Q ss_pred ccccccc------CcCCCceEEEEccCCEEEEEeCC-CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc
Q psy14257 340 RSPLVTK------NIQWPSSLVIDYNQDILYWCDSH-LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412 (841)
Q Consensus 340 ~~~l~~~------~~~~P~glavD~~~~~lYwaD~~-~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~ 412 (841)
...+... ....|..+++.+++++||+++.. .+.|-.+++.......-+.+ +.|
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~--------- 149 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDC--------- 149 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCC---------
Confidence 4333321 14467799999999999999976 89999999876544332222 111
Q ss_pred ceEEEEecCCC-------cEEEEcc--CCceEE--E-EecCC----CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC
Q psy14257 413 KNLYWVESNLD-------QIEVAKL--SGQFRR--T-LIAGD----MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 413 ~~LY~tD~~~~-------~I~v~~~--~G~~~~--~-l~~~~----l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld 476 (841)
..+|.+..... +.....+ +|+... . +.... +.+| ++.+.+|..+|... .+.|+.+++.
T Consensus 150 ~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~---eG~V~~id~~ 223 (352)
T TIGR02658 150 YHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTY---TGKIFQIDLS 223 (352)
T ss_pred cEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEec---CCeEEEEecC
Confidence 44555432222 2222222 222111 1 11110 2566 33443344444443 3799999987
Q ss_pred CCCcEEEEEecccCC----CCCCcee---EEEeccCCEEEEEe-CC--------CCeEEEEEcCCCeeEEEEcCCCCCCc
Q psy14257 477 GEHRSVIVRVDLLTS----RGAWPNG---LTLDYQLTRIYWID-AK--------SDSIHTVTYDGKDHHVVLSNHDSLTH 540 (841)
Q Consensus 477 G~~~~~i~~~~~~~~----~~~~P~g---lalD~~~~~LYw~d-~~--------~~~I~~~~~dG~~~~~i~~~~~~l~~ 540 (841)
+.............. .-..|.| +++++.+++||++. .. .+.|..+|.....+...+.. -..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~ 300 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHE 300 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCc
Confidence 765443332111101 1234666 99999999999953 22 26899999876555443332 246
Q ss_pred ceEEEE--ecC-eEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 541 PFAIAL--FEN-HVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 541 P~gla~--~~~-~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
|.+|++ ++. .||+++..++.|..++..+++.+..+
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 889998 446 89999999999999998888777665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-08 Score=109.28 Aligned_cols=124 Identities=16% Similarity=0.293 Sum_probs=86.4
Q ss_pred CCce-EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEe-cCCCC-----CcEEEEEecccCC---CCCCceeEE
Q psy14257 431 SGQF-RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERC-SMSGE-----HRSVIVRVDLLTS---RGAWPNGLT 500 (841)
Q Consensus 431 ~G~~-~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~-~ldG~-----~~~~i~~~~~~~~---~~~~P~gla 500 (841)
+|.. ..+++.+++..|.||++.+. | ||+++ .++|+++ +.+|. .+++++. ++... ....|++|+
T Consensus 58 dG~~d~~~vfa~~l~~p~Gi~~~~~-G-lyV~~----~~~i~~~~d~~gdg~ad~~~~~l~~-~~~~~~~~~~~~~~~l~ 130 (367)
T TIGR02604 58 DGKYDKSNVFAEELSMVTGLAVAVG-G-VYVAT----PPDILFLRDKDGDDKADGEREVLLS-GFGGQINNHHHSLNSLA 130 (367)
T ss_pred CCCcceeEEeecCCCCccceeEecC-C-EEEeC----CCeEEEEeCCCCCCCCCCccEEEEE-ccCCCCCcccccccCce
Confidence 4543 23455677899999999865 6 99987 4578888 44442 3444543 22111 235589999
Q ss_pred EeccCCEEEEEeCC-------------------CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCe
Q psy14257 501 LDYQLTRIYWIDAK-------------------SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNS 560 (841)
Q Consensus 501 lD~~~~~LYw~d~~-------------------~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~ 560 (841)
+++ +++||+++.. .+.|.+++++|+..+++..+ +..|.||++. .+.+|++|.....
T Consensus 131 ~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G---~rnp~Gl~~d~~G~l~~tdn~~~~ 206 (367)
T TIGR02604 131 WGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG---FQNPYGHSVDSWGDVFFCDNDDPP 206 (367)
T ss_pred ECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC---cCCCccceECCCCCEEEEccCCCc
Confidence 996 5799998762 15799999999988877643 7899999994 6899999875544
Q ss_pred EEEEe
Q psy14257 561 VIRAN 565 (841)
Q Consensus 561 i~~~~ 565 (841)
..+++
T Consensus 207 ~~~i~ 211 (367)
T TIGR02604 207 LCRVT 211 (367)
T ss_pred eeEEc
Confidence 44443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-07 Score=93.83 Aligned_cols=302 Identities=11% Similarity=0.101 Sum_probs=181.4
Q ss_pred eEEEEecCC-CCCeEEEecCCCCCc-EEEEEecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCC-eeEEE
Q psy14257 457 LLFWTDWDS-KAPRIERCSMSGEHR-SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGK-DHHVV 531 (841)
Q Consensus 457 ~Ly~td~~~-~~~~I~r~~ldG~~~-~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~-~~~~i 531 (841)
.+|+..... ....|+++.+|.... ..+... ...+..|+-|++++.+++||.+... .+.|.++..|.. .+-++
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~---v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ 80 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQL---VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF 80 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhh---ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE
Confidence 466665431 256799999984322 222110 1467889999999999999998765 678888888863 33333
Q ss_pred EcC-CCCCCcceEEEEec--CeEEEEeCCCCeEEEEeccC-CcceEEEecccCCCceec-cCCcccCCCCCCCCCCcccc
Q psy14257 532 LSN-HDSLTHPFAIALFE--NHVYWTDWRTNSVIRANKWN-GSDVTLIQRTLTQPFIYV-NGVVKKSPCEMNNGNCSHLC 606 (841)
Q Consensus 532 ~~~-~~~l~~P~gla~~~--~~lY~td~~~~~i~~~~~~~-g~~~~~i~~~~~~p~~~h-~qp~~~n~C~~~ng~Cs~lC 606 (841)
+.. ......|.-|++.+ .+||.+....+.|....... |.-..++........+.| +|-.. -.|.=
T Consensus 81 ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~----------h~H~a 150 (346)
T COG2706 81 LNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESP----------HVHSA 150 (346)
T ss_pred eeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCC----------cccee
Confidence 332 22234568899965 48999999888876554322 433222221111111122 22211 11222
Q ss_pred ccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEE
Q psy14257 607 LIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWT 686 (841)
Q Consensus 607 ~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~ 686 (841)
..+|.+.+.|.|.-| . ++|..+.++...........+..-.-|..|+|.|..+..|.+
T Consensus 151 ~~tP~~~~l~v~DLG----~------------------Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v 208 (346)
T COG2706 151 NFTPDGRYLVVPDLG----T------------------DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV 208 (346)
T ss_pred eeCCCCCEEEEeecC----C------------------ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEE
Confidence 234555555555333 2 234444443221111111112333568899999999999999
Q ss_pred ECCCCeEEEEEcccCc--eeeeeeeeeeeecccccccccccCceEEEEe--e---CCCCCcceeEEeecCCcEEEEecCC
Q psy14257 687 DQEYNEVKRSSIVGGQ--IQLVVDAVFEFYLTPLSKRSSIVGGQIQLVV--D---AGISHPSGLAIDWIAQNMFIAVSSP 759 (841)
Q Consensus 687 d~~~~~I~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~---~~~~~p~glAvD~~~~~LYw~~~~~ 759 (841)
..-+++|.....++.. .+. .+++. . .+......|.|...+|.||.+ ++
T Consensus 209 ~EL~stV~v~~y~~~~g~~~~-----------------------lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas--NR 263 (346)
T COG2706 209 NELNSTVDVLEYNPAVGKFEE-----------------------LQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS--NR 263 (346)
T ss_pred eccCCEEEEEEEcCCCceEEE-----------------------eeeeccCccccCCCCceeEEEECCCCCEEEEe--cC
Confidence 9889999999888743 111 11211 1 234456679999999999999 68
Q ss_pred CCCeEEEEecCCcc-eEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCC
Q psy14257 760 TQSKIVVCNLEGEY-QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 760 ~~~~I~v~~l~g~~-~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~ 823 (841)
..+.|.+++++-.. +-.++...+.. ..-||+..++|...+|+.+....+ .|.....|..
T Consensus 264 g~dsI~~f~V~~~~g~L~~~~~~~te---g~~PR~F~i~~~g~~Liaa~q~sd--~i~vf~~d~~ 323 (346)
T COG2706 264 GHDSIAVFSVDPDGGKLELVGITPTE---GQFPRDFNINPSGRFLIAANQKSD--NITVFERDKE 323 (346)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEeccC---CcCCccceeCCCCCEEEEEccCCC--cEEEEEEcCC
Confidence 88899999886542 22333210000 345999999999999999998775 4666665554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-07 Score=97.98 Aligned_cols=281 Identities=12% Similarity=0.058 Sum_probs=167.7
Q ss_pred ccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeec
Q psy14257 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIG 308 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~ 308 (841)
..|+..++.+............+.++.|....+. +|.+....+.|...++.++. ... .+.. ...|..+++++.+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~--l~~~~~~~~~v~~~d~~~~~--~~~-~~~~-~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKL--LYVCASDSDTIQVIDLATGE--VIG-TLPS-GPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCceEECCCCCE--EEEEECCCCeEEEEECCCCc--EEE-eccC-CCCccEEEECCCC
Confidence 4455555554443333333333556777665444 88888778889888876553 111 1222 2356778888766
Q ss_pred CceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEe
Q psy14257 309 KNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFN 388 (841)
Q Consensus 309 ~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~ 388 (841)
+.+|+ + ...++.|..+++......... ..-..|.++++++++..++.+......+..+++..........
T Consensus 85 ~~l~~--~-------~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 85 KILYI--A-------NEDDNLVTVIDIETRKVLAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred CEEEE--E-------cCCCCeEEEEECCCCeEEeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 55544 2 123457888888653221111 1123589999999888888877655556666665433221111
Q ss_pred eeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceE-EEEec------CCCCCceeEEEcCCCCeEEEE
Q psy14257 389 LEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFR-RTLIA------GDMESPRAIALDPRFGLLFWT 461 (841)
Q Consensus 389 ~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~-~~l~~------~~l~~P~giavd~~~g~Ly~t 461 (841)
.. ..+. ..+++..+..||++....+.|.+.++..... +.+-. .....|.+++++|...++|++
T Consensus 155 ~~--~~~~--------~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 155 VD--QRPR--------FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred cC--CCcc--------EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 00 0000 1123334466777765567898888865432 22211 112357899999998889988
Q ss_pred ecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcc
Q psy14257 462 DWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHP 541 (841)
Q Consensus 462 d~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P 541 (841)
... ..+|...+++......... .-..|.++++.+.+.+||.+....+.|..+++++.....-+.. -..|
T Consensus 225 ~~~--~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~ 293 (300)
T TIGR03866 225 LGP--ANRVAVVDAKTYEVLDYLL------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---GRLP 293 (300)
T ss_pred cCC--CCeEEEEECCCCcEEEEEE------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---cccc
Confidence 765 4678888875433222222 1236889999998899998877778999999988664333332 2678
Q ss_pred eEEEE
Q psy14257 542 FAIAL 546 (841)
Q Consensus 542 ~gla~ 546 (841)
++|++
T Consensus 294 ~~~~~ 298 (300)
T TIGR03866 294 WGVVV 298 (300)
T ss_pred ceeEe
Confidence 99886
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-06 Score=93.68 Aligned_cols=287 Identities=10% Similarity=0.104 Sum_probs=170.2
Q ss_pred CeEEEEecCC--CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC---------CCCeEEEEEcC
Q psy14257 456 GLLFWTDWDS--KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA---------KSDSIHTVTYD 524 (841)
Q Consensus 456 g~Ly~td~~~--~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~---------~~~~I~~~~~d 524 (841)
.++|++|... ..++|..++.+.....-.+. ....|.++ +.++++.||++.. ..+.|..+|..
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~------~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTD------GGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEE------ccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 5789988651 12678888776533333333 44689997 9999999999999 88999999987
Q ss_pred CC-eeEEEEcCCC----CCCcceEEEE--ecCeEEEEeCC-CCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCC
Q psy14257 525 GK-DHHVVLSNHD----SLTHPFAIAL--FENHVYWTDWR-TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCE 596 (841)
Q Consensus 525 G~-~~~~i~~~~~----~l~~P~gla~--~~~~lY~td~~-~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~ 596 (841)
.. ....+..... ....|..+++ .+.+||++++. .++|..++..+++.+..|.-
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------------------- 146 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV------------------- 146 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-------------------
Confidence 54 3333332211 1344556666 45689999987 88999999877776554431
Q ss_pred CCCCCCccccccCCCCceeeeCCCCceee----cCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCce
Q psy14257 597 MNNGNCSHLCLIGMNGTYKCQCPHVMKLM----SDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPN 672 (841)
Q Consensus 597 ~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~----~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 672 (841)
++|.++-.... ..+.-.|++|-.+. .+++ .. .....++ +.. ..+ -+.+|
T Consensus 147 ---p~~~~vy~t~e-~~~~~~~~Dg~~~~v~~d~~g~---------~~-~~~~~vf----~~~---~~~-----v~~rP- 199 (352)
T TIGR02658 147 ---PDCYHIFPTAN-DTFFMHCRDGSLAKVGYGTKGN---------PK-IKPTEVF----HPE---DEY-----LINHP- 199 (352)
T ss_pred ---CCCcEEEEecC-CccEEEeecCceEEEEecCCCc---------eE-Eeeeeee----cCC---ccc-----cccCC-
Confidence 45766655333 33556677764443 1111 00 0000000 000 011 11334
Q ss_pred EEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEee------CCCCCcceeEEe
Q psy14257 673 NLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVD------AGISHPSGLAID 746 (841)
Q Consensus 673 ~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~p~glAvD 746 (841)
.|.+..++.+|+..+ ++|+.+++.+.....+. ..+++.. ..-..++.+|++
T Consensus 200 --~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------------------~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 200 --AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------------------AIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred --ceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------------------eeeeccccccccccCCCcceeEEEc
Confidence 456656777777766 99999998775511110 0011110 011223339999
Q ss_pred ecCCcEEEEecCCCC--------CeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCC-eEEEEecCCCcceEEE
Q psy14257 747 WIAQNMFIAVSSPTQ--------SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKG-KMFWSNVTKQVVTIEM 817 (841)
Q Consensus 747 ~~~~~LYw~~~~~~~--------~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g-~lyw~d~~~~~~~I~~ 817 (841)
..+++||++. .... ++|.++++....+..-+.- -..|.+|++.|... +||.+....+ .|..
T Consensus 257 ~dg~~lyV~~-~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-------G~~~~~iavS~Dgkp~lyvtn~~s~--~VsV 326 (352)
T TIGR02658 257 RARDRIYLLA-DQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-------GHEIDSINVSQDAKPLLYALSTGDK--TLYI 326 (352)
T ss_pred CCCCEEEEEe-cCCccccccCCCCEEEEEECCCCeEEEEEeC-------CCceeeEEECCCCCeEEEEeCCCCC--cEEE
Confidence 9999999963 2222 5677877755544333332 26899999999999 9999998764 4554
Q ss_pred EecCCCceEEEec
Q psy14257 818 AFMDGTKRETVVS 830 (841)
Q Consensus 818 ~~~dG~~~~~l~~ 830 (841)
++ ...++++.+
T Consensus 327 iD--~~t~k~i~~ 337 (352)
T TIGR02658 327 FD--AETGKELSS 337 (352)
T ss_pred EE--CcCCeEEee
Confidence 44 444444444
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-08 Score=107.53 Aligned_cols=262 Identities=18% Similarity=0.198 Sum_probs=148.7
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEE-----EEeCCCCCccceEEeee---cCceeEEEeeec
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDV-----VVQTGLSTAEGLAVDWI---GKNLYMFWAFWS 319 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~-----~~~~~l~~p~giavD~~---~~~~y~~~td~~ 319 (841)
|+++.+|.|... ++ ||+++. .|+|++...+ +.. ...+ +...+...+.|||+++. .+.+|++.+...
T Consensus 1 L~~P~~~a~~pd-G~--l~v~e~-~G~i~~~~~~-g~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GR--LLVAER-SGRIWVVDKD-GSL-KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp ESSEEEEEEETT-SC--EEEEET-TTEEEEEETT-TEE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CCCceEEEEeCC-Cc--EEEEeC-CceEEEEeCC-CcC-cceecccccccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 356888888876 56 999987 8999999744 332 1111 12344567889999983 356788877541
Q ss_pred CCCCCCCCCCEEEEccCCC-----ccccccc------cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEe
Q psy14257 320 LSPSNSSDGGIEKAGMHGE-----NRSPLVT------KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFN 388 (841)
Q Consensus 320 ~~~~~~~~~~I~~~~~dG~-----~~~~l~~------~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~ 388 (841)
... .....+|.|+..+.. ..++++. ...+...+|++++++ +|||+-..... .+
T Consensus 75 ~~~-~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~-----~~--------- 138 (331)
T PF07995_consen 75 EDG-GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGN-----DD--------- 138 (331)
T ss_dssp TSS-SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTT-----GG---------
T ss_pred CCC-CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCC-----cc---------
Confidence 111 122347888887644 2222321 134566779999865 88887432211 00
Q ss_pred eeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCce------------EEEEecCCCCCceeEEEcCCCC
Q psy14257 389 LEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF------------RRTLIAGDMESPRAIALDPRFG 456 (841)
Q Consensus 389 ~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~------------~~~l~~~~l~~P~giavd~~~g 456 (841)
. + ..+ ....++|.+++.+|+. ...+...++.+|.++++||..|
T Consensus 139 ---------~--------~-----~~~---~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg 193 (331)
T PF07995_consen 139 ---------N--------A-----QDP---NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG 193 (331)
T ss_dssp ---------G--------G-----CST---TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT
T ss_pred ---------c--------c-----ccc---ccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC
Confidence 0 0 000 1123456666666541 1133456889999999999999
Q ss_pred eEEEEecCCCC-CeEEEecCCCCC--------------c------------EEEEEecccCCCCCCceeEEEec------
Q psy14257 457 LLFWTDWDSKA-PRIERCSMSGEH--------------R------------SVIVRVDLLTSRGAWPNGLTLDY------ 503 (841)
Q Consensus 457 ~Ly~td~~~~~-~~I~r~~ldG~~--------------~------------~~i~~~~~~~~~~~~P~glalD~------ 503 (841)
.||.+|.+... -.|.++.- |.+ . .-+... ..-..|.|+++=.
T Consensus 194 ~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~----~~~~ap~G~~~y~g~~fp~ 268 (331)
T PF07995_consen 194 RLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAY----PPHSAPTGIIFYRGSAFPE 268 (331)
T ss_dssp EEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEE----TTT--EEEEEEE-SSSSGG
T ss_pred cEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCccccccCCCCcCccceee----cCccccCceEEECCccCcc
Confidence 99999976321 23333331 111 0 000110 1235688988752
Q ss_pred cCCEEEEEeCCCCeEEEEEcCCCe----eEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEEE
Q psy14257 504 QLTRIYWIDAKSDSIHTVTYDGKD----HHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIR 563 (841)
Q Consensus 504 ~~~~LYw~d~~~~~I~~~~~dG~~----~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~~ 563 (841)
..+.+++++...++|.++.++... .+.++. ..-..|.+|++ .+|.||+++..+++|+|
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG--GFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT--TSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCCccceEEccc--cCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 257899999999999999997432 222221 11237889999 46899999999999986
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.3e-07 Score=96.52 Aligned_cols=283 Identities=17% Similarity=0.264 Sum_probs=148.4
Q ss_pred CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe-cccCCCCCCceeEEEec---cCCEEEEEeCCC---
Q psy14257 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV-DLLTSRGAWPNGLTLDY---QLTRIYWIDAKS--- 515 (841)
Q Consensus 443 l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~-~~~~~~~~~P~glalD~---~~~~LYw~d~~~--- 515 (841)
|++|++||+.|+ |.||+++. .++|+++..+|.....+... .........+.|||+++ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~---~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER---SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET---TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred CCCceEEEEeCC-CcEEEEeC---CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 468999999997 89999995 48999999888774444442 22223456678999997 368999877632
Q ss_pred -----CeEEEEEcCCC-----eeEEEEcC-C---CCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccC
Q psy14257 516 -----DSIHTVTYDGK-----DHHVVLSN-H---DSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLT 580 (841)
Q Consensus 516 -----~~I~~~~~dG~-----~~~~i~~~-~---~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~ 580 (841)
.+|.++.++.. ..++++.. . .......+|++. +++|||+-..... .....
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~---------------~~~~~ 141 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN---------------DDNAQ 141 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT---------------GGGGC
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC---------------ccccc
Confidence 47888877654 23333322 1 112333556663 5789988543321 00000
Q ss_pred CCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCcccc
Q psy14257 581 QPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTI 660 (841)
Q Consensus 581 ~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~ 660 (841)
.+ + ...+.- +.+.+|+. .- ...||+ . ... ..
T Consensus 142 ~~----------------~---------~~~G~i-------lri~~dG~-~p-~dnP~~---~----------~~~--~~ 172 (331)
T PF07995_consen 142 DP----------------N---------SLRGKI-------LRIDPDGS-IP-ADNPFV---G----------DDG--AD 172 (331)
T ss_dssp ST----------------T---------SSTTEE-------EEEETTSS-B--TTSTTT---T----------STT--ST
T ss_pred cc----------------c---------cccceE-------EEecccCc-CC-CCCccc---c----------CCC--ce
Confidence 00 0 000000 00111111 00 001111 0 000 00
Q ss_pred ceeecCCCCCceEEEEecCCCEEEEEECCCC---eEEEEEcccCceeeeeeeeeeeeccccccc-----------cccc-
Q psy14257 661 PTISIPQVFSPNNLNFDAANKKIYWTDQEYN---EVKRSSIVGGQIQLVVDAVFEFYLTPLSKR-----------SSIV- 725 (841)
Q Consensus 661 ~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~---~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~- 725 (841)
..+-...+.|+.+++||+.++.||.+|.... .|.++. .|.+ |-=|..+. ....
T Consensus 173 ~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~n-----------YGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 173 SEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGN-----------YGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B-------------TTTBSSSCSTTSS-ECTGSS-T
T ss_pred EEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec-cCCc-----------CCCCCCcCCCCCCCCccccccCCC
Confidence 1111236789999999999999999996543 455543 2322 31111110 0000
Q ss_pred CceEEEEeeCCCCCcceeEEee------cCCcEEEEecCCCCCeEEEEecCCcc----eEEEEcCCCCCCCcCC-CceEE
Q psy14257 726 GGQIQLVVDAGISHPSGLAIDW------IAQNMFIAVSSPTQSKIVVCNLEGEY----QTTILSNESNDTSTLS-KISSI 794 (841)
Q Consensus 726 ~~~~~~i~~~~~~~p~glAvD~------~~~~LYw~~~~~~~~~I~v~~l~g~~----~~~~~~~~~~~~~~l~-~p~~i 794 (841)
......+.-..-..|.||++-. ..+.+|++ +....+|.++.++... ...++.. .. +|++|
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~r~~~v 311 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGG-------FGGRPRDV 311 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTT-------SSS-EEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEcccc-------CCCCceEE
Confidence 1101111112235788888872 24468999 4578899999997332 3334433 44 89999
Q ss_pred EEeCCCCeEEEEecCCCcceEEE
Q psy14257 795 AVWPVKGKMFWSNVTKQVVTIEM 817 (841)
Q Consensus 795 avd~~~g~lyw~d~~~~~~~I~~ 817 (841)
+++|. |.||.++... ++|.|
T Consensus 312 ~~~pD-G~Lyv~~d~~--G~iyR 331 (331)
T PF07995_consen 312 AQGPD-GALYVSDDSD--GKIYR 331 (331)
T ss_dssp EEETT-SEEEEEE-TT--TTEEE
T ss_pred EEcCC-CeEEEEECCC--CeEeC
Confidence 99996 9999999854 47876
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-07 Score=93.02 Aligned_cols=211 Identities=16% Similarity=0.155 Sum_probs=114.6
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
..++.|+.|+...+. ||-+.-..+.|+..+++|. -.+.+--.+..-++||++ .+++.|+.-.+ ..
T Consensus 21 ~~e~SGLTy~pd~~t--LfaV~d~~~~i~els~~G~---vlr~i~l~g~~D~EgI~y--~g~~~~vl~~E--------r~ 85 (248)
T PF06977_consen 21 LDELSGLTYNPDTGT--LFAVQDEPGEIYELSLDGK---VLRRIPLDGFGDYEGITY--LGNGRYVLSEE--------RD 85 (248)
T ss_dssp -S-EEEEEEETTTTE--EEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE---STTEEEEEET--------TT
T ss_pred cCCccccEEcCCCCe--EEEEECCCCEEEEEcCCCC---EEEEEeCCCCCCceeEEE--ECCCEEEEEEc--------CC
Confidence 346899999987766 9988778899999988753 334455567889999998 45566665332 23
Q ss_pred CCEEEEccC--CCccccc--cccCcC-------CCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCC
Q psy14257 328 GGIEKAGMH--GENRSPL--VTKNIQ-------WPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDS 396 (841)
Q Consensus 328 ~~I~~~~~d--G~~~~~l--~~~~~~-------~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~ 396 (841)
++|.++..+ ++....- ..-.+. .-.||++|+.+++||++-....
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P------------------------- 140 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP------------------------- 140 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------------------------
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------------------------
Confidence 466666652 3221111 001222 2479999999999998853221
Q ss_pred ccccCCCCCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec
Q psy14257 397 RVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS 474 (841)
Q Consensus 397 ~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ 474 (841)
..||=.+. ....+.+.....-.. ....+..|.+|++||..|+||+.... +..|...+
T Consensus 141 ----------------~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~S~l~~~p~t~~lliLS~e--s~~l~~~d 199 (248)
T PF06977_consen 141 ----------------KRLYEVNGFPGGFDLFVSDDQDLDD---DKLFVRDLSGLSYDPRTGHLLILSDE--SRLLLELD 199 (248)
T ss_dssp ----------------EEEEEEESTT-SS--EEEE-HHHH----HT--SS---EEEEETTTTEEEEEETT--TTEEEEE-
T ss_pred ----------------hhhEEEccccCccceeecccccccc---ccceeccccceEEcCCCCeEEEEECC--CCeEEEEC
Confidence 12222221 111111111111000 11235679999999999999999865 78999999
Q ss_pred CCCCCcEEEEEec-c--cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 475 MSGEHRSVIVRVD-L--LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 475 ldG~~~~~i~~~~-~--~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
.+|.....+.-.. . ....+.+|.|||+|. +|+||++.. -+..+++
T Consensus 200 ~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 200 RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET-TTEEEEE
T ss_pred CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC-CceEEEe
Confidence 9998655443210 0 013567899999995 789999886 4566655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.8e-07 Score=90.99 Aligned_cols=201 Identities=16% Similarity=0.151 Sum_probs=120.8
Q ss_pred CCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEE-EecCCCcEEE
Q psy14257 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYW-VESNLDQIEV 427 (841)
Q Consensus 349 ~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~-tD~~~~~I~v 427 (841)
..++||++++++++||.+.-+...|..++++|.-.+.+. ...+ ..+++|.++++..|+ ++...+++.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~-l~g~----------~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP-LDGF----------GDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--SS-----------SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe-CCCC----------CCceeEEEECCCEEEEEEcCCCcEEE
Confidence 348999999999999999999999999999987655432 1111 123456666666665 5666788888
Q ss_pred EccC--Cce--EE---EE--ecC--CCCCceeEEEcCCCCeEEEEecCCCCC-eEEEecC--CCCCcEEEEEecc--cCC
Q psy14257 428 AKLS--GQF--RR---TL--IAG--DMESPRAIALDPRFGLLFWTDWDSKAP-RIERCSM--SGEHRSVIVRVDL--LTS 491 (841)
Q Consensus 428 ~~~~--G~~--~~---~l--~~~--~l~~P~giavd~~~g~Ly~td~~~~~~-~I~r~~l--dG~~~~~i~~~~~--~~~ 491 (841)
+.++ ++. .. .+ ... +-..-.|||.|+.++.||++.-. .+ .|+.++. .+....+...... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccccccccccc
Confidence 7773 221 11 11 111 12335899999999999998654 34 6788876 3333333322111 123
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC------CCCCcceEEEEe-cCeEEEEeCCCCeEEE
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH------DSLTHPFAIALF-ENHVYWTDWRTNSVIR 563 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~------~~l~~P~gla~~-~~~lY~td~~~~~i~~ 563 (841)
.+..|.+|++|+.+++||+......+|..++.+|..+..+.-.. ..+++|-|||+. +|.||++.-. +..++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEE
Confidence 56679999999999999999999999999999998766543332 346789999995 5899999853 34443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-09 Score=72.83 Aligned_cols=36 Identities=47% Similarity=1.151 Sum_probs=30.9
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCcc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC 631 (841)
|..+||+|+|+|+..+. +|+|.||.||.|.+|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g-~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPG-SYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETT-SEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCC-ceEeECCCCCEECcCCCCC
Confidence 67789999999999964 5999999999999999987
|
... |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-06 Score=92.35 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=130.9
Q ss_pred eEEEecCCCeEEEEEec--CC--cccce-EEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCc
Q psy14257 265 VFWTDVIDDKIYNATLI--GN--SLSNI-DVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN 339 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~--~~--~~~~~-~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~ 339 (841)
|+|+-...+.|-++... .. ..... ..-...--..|-|||++..++++|+.++.. .+++++..|..
T Consensus 78 l~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYl----------GL~~V~p~g~~ 147 (376)
T KOG1520|consen 78 LKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYL----------GLLKVGPEGGL 147 (376)
T ss_pred EEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecce----------eeEEECCCCCc
Confidence 67776666666655431 00 00000 111122236899999999998999876554 57888888887
Q ss_pred ccccccc----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceE
Q psy14257 340 RSPLVTK----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNL 415 (841)
Q Consensus 340 ~~~l~~~----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~L 415 (841)
...+... ++...++++||. ++.|||+|+....= ++ +.+
T Consensus 148 a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~---------~r----------------------------d~~ 189 (376)
T KOG1520|consen 148 AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYD---------RR----------------------------DFV 189 (376)
T ss_pred ceeccccccCeeeeecCceeEcC-CCeEEEeccccccc---------hh----------------------------heE
Confidence 5555443 677889999998 99999999743100 00 112
Q ss_pred EEE--ecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc---EEEEEecccC
Q psy14257 416 YWV--ESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR---SVIVRVDLLT 490 (841)
Q Consensus 416 Y~t--D~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~---~~i~~~~~~~ 490 (841)
+.. ...++|+.++|...+..++++ ++|.-|+|||+.+++.++-+++.. ..+|.|..+.|... ++++.
T Consensus 190 ~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~Et~--~~ri~rywi~g~k~gt~EvFa~----- 261 (376)
T KOG1520|consen 190 FAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAETT--TARIKRYWIKGPKAGTSEVFAE----- 261 (376)
T ss_pred EeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEeec--cceeeeeEecCCccCchhhHhh-----
Confidence 211 124678888888877776665 579999999999999999999987 78999999998766 66655
Q ss_pred CCCCCceeEEEeccCCEEEEEe
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d 512 (841)
.--..|.-|..+ .+|..+++-
T Consensus 262 ~LPG~PDNIR~~-~~G~fWVal 282 (376)
T KOG1520|consen 262 GLPGYPDNIRRD-STGHFWVAL 282 (376)
T ss_pred cCCCCCcceeEC-CCCCEEEEE
Confidence 234579999998 456555543
|
|
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-09 Score=73.44 Aligned_cols=36 Identities=50% Similarity=1.246 Sum_probs=33.2
Q ss_pred CCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 31 ~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.|...+|+|. ++.||+..|+|||..||. |||||.+|
T Consensus 2 ~C~~~~f~C~-~~~CI~~~~~CDg~~DC~--dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCG-NGQCIPKSWVCDGIPDCP--DGSDEQNC 37 (37)
T ss_dssp SSSTTEEEET-TSSEEEGGGTTSSSCSSS--SSTTTSSH
T ss_pred cCcCCeeEcC-CCCEEChHHcCCCCCCCC--CCcccccC
Confidence 6889999998 777999999999999999 99999876
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A .... |
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-09 Score=71.24 Aligned_cols=35 Identities=54% Similarity=1.359 Sum_probs=32.1
Q ss_pred CCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 32 C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
|.+++|+|. +++|||..|+|||..||. |+|||..|
T Consensus 1 C~~~~f~C~-~~~Ci~~~~~CDg~~DC~--dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCA-NGRCIPSSWVCDGEDDCG--DGSDEENC 35 (35)
T ss_pred CCCCeEEcC-CCCeeCHHHcCCCccCCC--CCcccccC
Confidence 677899998 699999999999999999 99999765
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-08 Score=70.19 Aligned_cols=41 Identities=41% Similarity=0.727 Sum_probs=39.1
Q ss_pred ceEEEEecCCC-cEEEEccCCceEEEEecCCCCCceeEEEcC
Q psy14257 413 KNLYWVESNLD-QIEVAKLSGQFRRTLIAGDMESPRAIALDP 453 (841)
Q Consensus 413 ~~LY~tD~~~~-~I~v~~~~G~~~~~l~~~~l~~P~giavd~ 453 (841)
++|||||...+ .|.+++++|+.+++++..++.+|+|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 57999999999 999999999999999999999999999986
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-06 Score=84.47 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=150.0
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
.|..+|.++.+ -|.+++. ..+.|-+.+.......++....-..|.||.++++ +..+++|... .|.|++
T Consensus 63 ap~dvapapdG---~VWft~q-------g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpd-g~~Witd~~~-aI~R~d 130 (353)
T COG4257 63 APFDVAPAPDG---AVWFTAQ-------GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPD-GSAWITDTGL-AIGRLD 130 (353)
T ss_pred CccccccCCCC---ceEEecC-------ccccceecCCCCCceEEEecCCCCCCceEEECCC-CCeeEecCcc-eeEEec
Confidence 67778877543 3333432 2345666665544444444445568999999976 6678888877 888887
Q ss_pred ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCe
Q psy14257 378 VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGL 457 (841)
Q Consensus 378 ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~ 457 (841)
....+.+.+--...... ..+ ..++---.|+|+||.. .+.--+.+..-..+++.-...-..|.||++.|+ |.
T Consensus 131 pkt~evt~f~lp~~~a~-~nl------et~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpd-Gs 201 (353)
T COG4257 131 PKTLEVTRFPLPLEHAD-ANL------ETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICATPD-GS 201 (353)
T ss_pred CcccceEEeecccccCC-Ccc------cceeeCCCccEEEeec-cccceecCcccCceeeeccCCCCCCcceEECCC-Cc
Confidence 75554444311110000 000 0011112278888865 233334444444445544433467999999986 89
Q ss_pred EEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC-CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC
Q psy14257 458 LFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR-GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD 536 (841)
Q Consensus 458 Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~-~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~ 536 (841)
+|++... .+.|-|++.-....+++..- .. -..-..+-.|+ .++++.++..++.++++++.-..-....- .+
T Consensus 202 vwyasla--gnaiaridp~~~~aev~p~P----~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypL-Pg 273 (353)
T COG4257 202 VWYASLA--GNAIARIDPFAGHAEVVPQP----NALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPL-PG 273 (353)
T ss_pred EEEEecc--ccceEEcccccCCcceecCC----CcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeC-CC
Confidence 9999866 57888888643344444331 11 11223455664 58999999999999999987654333221 22
Q ss_pred CCCcceEEEEec-CeEEEEeCCCCeEEEEeccCC
Q psy14257 537 SLTHPFAIALFE-NHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 537 ~l~~P~gla~~~-~~lY~td~~~~~i~~~~~~~g 569 (841)
...+|+.+-++. |+++.+|+..+.|.|.+..+-
T Consensus 274 s~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 274 SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred CCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 356899999965 889999999999999998643
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.9e-08 Score=69.36 Aligned_cols=41 Identities=37% Similarity=0.872 Sum_probs=38.6
Q ss_pred CEEEEEECCCC-eEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEee
Q psy14257 681 KKIYWTDQEYN-EVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDW 747 (841)
Q Consensus 681 ~~iyw~d~~~~-~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~ 747 (841)
++|||+|...+ .|.+++++|++ +++++..++..|+||||||
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~--------------------------~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSN--------------------------RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTS--------------------------EEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCC--------------------------eEEEEECCCCCcCEEEECC
Confidence 58999999999 99999999998 8888999999999999997
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.9e-06 Score=81.30 Aligned_cols=257 Identities=14% Similarity=0.089 Sum_probs=155.5
Q ss_pred ccccccccccccEEEEe-ccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeee
Q psy14257 229 HELRGVDLRTFNVIALI-SSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWI 307 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~-~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~ 307 (841)
..|-+++..+++++.+. ..-..+.+|-.... +. .+++|... .|.|.+.+...+....+.....-...+-..+|+.
T Consensus 83 gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpd-g~--~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~ 158 (353)
T COG4257 83 GAIGHLDPATGEVETYPLGSGASPHGIVVGPD-GS--AWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPW 158 (353)
T ss_pred ccceecCCCCCceEEEecCCCCCCceEEECCC-CC--eeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCC
Confidence 55778888887776653 23345666665554 45 89999887 8999876544332233333333334555678865
Q ss_pred cCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEE
Q psy14257 308 GKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSF 387 (841)
Q Consensus 308 ~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~ 387 (841)
+ ++++ |.. .|---|.+..-...+++....-.-|.||.+.++
T Consensus 159 G-~lWF--t~q--------~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpd---------------------------- 199 (353)
T COG4257 159 G-NLWF--TGQ--------IGAYGRLDPARNVISVFPAPQGGGPYGICATPD---------------------------- 199 (353)
T ss_pred c-cEEE--eec--------cccceecCcccCceeeeccCCCCCCcceEECCC----------------------------
Confidence 4 4433 321 111113333333333333344456888888754
Q ss_pred eeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEE-ecCC-CCCceeEEEcCCCCeEEEEecCC
Q psy14257 388 NLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTL-IAGD-MESPRAIALDPRFGLLFWTDWDS 465 (841)
Q Consensus 388 ~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l-~~~~-l~~P~giavd~~~g~Ly~td~~~ 465 (841)
|.||++....+.|.+++.-....+++ ..+. ...-+.|-.||. |.++.|+|+
T Consensus 200 -------------------------Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi-g~~wittwg- 252 (353)
T COG4257 200 -------------------------GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI-GRAWITTWG- 252 (353)
T ss_pred -------------------------CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCcc-CcEEEeccC-
Confidence 55566555555666555432222222 2222 234567888886 899999999
Q ss_pred CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEE
Q psy14257 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIA 545 (841)
Q Consensus 466 ~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla 545 (841)
+++++|++..-+.-...-- +..-..|..|-+| ..+|++.+|...+.|.++|+.....+++... -.++--+.
T Consensus 253 -~g~l~rfdPs~~sW~eypL----Pgs~arpys~rVD-~~grVW~sea~agai~rfdpeta~ftv~p~p---r~n~gn~q 323 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYPL----PGSKARPYSMRVD-RHGRVWLSEADAGAIGRFDPETARFTVLPIP---RPNSGNIQ 323 (353)
T ss_pred -CceeeEeCcccccceeeeC----CCCCCCcceeeec-cCCcEEeeccccCceeecCcccceEEEecCC---CCCCCcee
Confidence 8999999986554322211 1344678999999 5789999999999999999876555544332 23344455
Q ss_pred Ee--cCeEEEEeCCCCeEEEE
Q psy14257 546 LF--ENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 546 ~~--~~~lY~td~~~~~i~~~ 564 (841)
+. .|.++.++.....+.+.
T Consensus 324 l~gr~ge~W~~e~gvd~lv~~ 344 (353)
T COG4257 324 LDGRPGELWFTEAGVDALVTT 344 (353)
T ss_pred ccCCCCceeecccCcceeEEE
Confidence 54 47888888777666544
|
|
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-08 Score=67.99 Aligned_cols=36 Identities=36% Similarity=0.720 Sum_probs=31.2
Q ss_pred ccccCCCCCCCcccCCCCcEEecCCCceecCCCCcc
Q psy14257 134 KQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
|...++.|+|.|.+++++|+|+|++||.|.+|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 455688999999999999999999999999999987
|
... |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-06 Score=81.43 Aligned_cols=207 Identities=15% Similarity=0.207 Sum_probs=122.6
Q ss_pred ceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCC-ccccCCCCCCccccccceEEEEecCCCcEEEEcc
Q psy14257 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDS-RVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKL 430 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~-~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~ 430 (841)
.|+.+|.+++.|||+|...+.|.|.+..-...... ..-+.+. ...+|.-. +-..|.+--+ .+....+.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra---~ie~p~~ag~ilpv~~-------~~q~~~v~~G-~kf~i~nw 86 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRA---KIEGPPSAGFILPVEG-------GPQEFAVGCG-SKFVIVNW 86 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEE---EEecCcceeEEEEecC-------CCceEEEeec-ceEEEEEc
Confidence 78999999999999999888887765543222111 0000000 00000000 0123333222 24445566
Q ss_pred CCceEEE-EecC------C--CCCceeEEEcCCCCeEEEEe---cCC---CCCeEEEecCCCCCcEEEEEecccCCCCCC
Q psy14257 431 SGQFRRT-LIAG------D--MESPRAIALDPRFGLLFWTD---WDS---KAPRIERCSMSGEHRSVIVRVDLLTSRGAW 495 (841)
Q Consensus 431 ~G~~~~~-l~~~------~--l~~P~giavd~~~g~Ly~td---~~~---~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~ 495 (841)
+|..... +..+ . -.+-+.--+||..++ |.-- .+. .-+...+..+-|.....+. ..+..
T Consensus 87 d~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~------~~v~I 159 (310)
T KOG4499|consen 87 DGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIW------NCVGI 159 (310)
T ss_pred ccccceeeeeeeccccCchHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeee------hhccC
Confidence 7643222 2211 1 124456678887554 5432 110 1122333334444444444 36778
Q ss_pred ceeEEEeccCCEEEEEeCCCCeEEEEEcCC-----CeeEEEEcCC----CCCCcceEEEEe-cCeEEEEeCCCCeEEEEe
Q psy14257 496 PNGLTLDYQLTRIYWIDAKSDSIHTVTYDG-----KDHHVVLSNH----DSLTHPFAIALF-ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 496 P~glalD~~~~~LYw~d~~~~~I~~~~~dG-----~~~~~i~~~~----~~l~~P~gla~~-~~~lY~td~~~~~i~~~~ 565 (841)
||||+.|.+.+..|++|+.+-.|-.+++|- ++++.++.-. ..-..|.|++++ +|+||++-|..++|++++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 999999999999999999999998887652 4555554321 122468999994 699999999999999999
Q ss_pred ccCCcceEEEe
Q psy14257 566 KWNGSDVTLIQ 576 (841)
Q Consensus 566 ~~~g~~~~~i~ 576 (841)
+.+|+-...+.
T Consensus 240 p~tGK~L~eik 250 (310)
T KOG4499|consen 240 PTTGKILLEIK 250 (310)
T ss_pred CCCCcEEEEEE
Confidence 99998765443
|
|
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=91.02 Aligned_cols=151 Identities=20% Similarity=0.227 Sum_probs=103.0
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEE
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIE 426 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~ 426 (841)
..++|-||+++..++.||+||...+ |+.+++.|+..+.+.
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~--------------------------------------- 152 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLA--------------------------------------- 152 (376)
T ss_pred ccCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceecc---------------------------------------
Confidence 5689999999999889999987544 333333333211110
Q ss_pred EEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC---------------CCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 427 VAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS---------------KAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 427 v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~---------------~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
-..+|. .+...+++.|++ +|.+||||... ..+++.|.+..-+..+++. .
T Consensus 153 -~~~~G~--------~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl------d 216 (376)
T KOG1520|consen 153 -DEAEGK--------PFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL------D 216 (376)
T ss_pred -ccccCe--------eeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh------h
Confidence 001111 123456889998 79999999653 2455666665555555555 4
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee---EEEEcCCCCCCcceEEEEec-CeEEEEe
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH---HVVLSNHDSLTHPFAIALFE-NHVYWTD 555 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~---~~i~~~~~~l~~P~gla~~~-~~lY~td 555 (841)
++..|||+++.+++..+.+++....+|.++-+.|... .+++++- -..|.-|...+ |.+|++-
T Consensus 217 ~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~L--PG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 217 GLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGL--PGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred cccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcC--CCCCcceeECCCCCEEEEE
Confidence 8999999999999999999999999999999998766 5555532 34688888755 6666654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-05 Score=83.09 Aligned_cols=190 Identities=16% Similarity=0.193 Sum_probs=118.2
Q ss_pred ceEEEEccCCEEEEEeCCC------------CeEEEEEecCCccEEEEee--eeecCCCccccCCCCCCccccc-----c
Q psy14257 352 SSLVIDYNQDILYWCDSHL------------NTVESVRVDGSERTVSFNL--EVLGSDSRVGIPNCRPEDNLWI-----G 412 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~------------~~I~~~~ldG~~~~~~~~~--~~~~~~~~~~i~~~~~~avdw~-----~ 412 (841)
.++.+| ..++|++.|... .+|..+++........+.. ........+. -++||-. .
T Consensus 4 ~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-----dl~VD~~~~~~~~ 77 (287)
T PF03022_consen 4 QRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-----DLVVDVRDGNCDD 77 (287)
T ss_dssp EEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-----EEEEECTTTTS-S
T ss_pred cEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-----eEEEEccCCCCcc
Confidence 466777 468888888642 3777777765543322221 1111111100 0123332 2
Q ss_pred ceEEEEecCCCcEEEEccC-CceEEEEecCCC------------------CCceeEEEcC---CCCeEEEEecCCCCCeE
Q psy14257 413 KNLYWVESNLDQIEVAKLS-GQFRRTLIAGDM------------------ESPRAIALDP---RFGLLFWTDWDSKAPRI 470 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l------------------~~P~giavd~---~~g~Ly~td~~~~~~~I 470 (841)
+.+|+||.....|.|+++. |+..+++...-. ....|||+.| .++.|||.--. ..++
T Consensus 78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls--s~~l 155 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS--SRKL 155 (287)
T ss_dssp EEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---SEE
T ss_pred eEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC--CCcE
Confidence 6899999999999999986 455555433111 2246788876 45689999866 5788
Q ss_pred EEecC----CCC---------CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC----CeeEEEEc
Q psy14257 471 ERCSM----SGE---------HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG----KDHHVVLS 533 (841)
Q Consensus 471 ~r~~l----dG~---------~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG----~~~~~i~~ 533 (841)
+++.. +.+ ..+.+.. ......|+++|. ++.||+++...+.|.+.+.++ .+.+++++
T Consensus 156 y~v~T~~L~~~~~~~~~~~~~~v~~lG~------k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~ 228 (287)
T PF03022_consen 156 YRVPTSVLRDPSLSDAQALASQVQDLGD------KGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ 228 (287)
T ss_dssp EEEEHHHHCSTT--HHH-HHHT-EEEEE---------SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE
T ss_pred EEEEHHHhhCccccccccccccceeccc------cCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEE
Confidence 88885 221 1123332 224568999995 899999999999999999998 56777887
Q ss_pred CCCCCCcceEEEEec---CeEEEEeC
Q psy14257 534 NHDSLTHPFAIALFE---NHVYWTDW 556 (841)
Q Consensus 534 ~~~~l~~P~gla~~~---~~lY~td~ 556 (841)
....+..|.++++.. ++||+...
T Consensus 229 d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 229 DPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cCceeeccceeeeccccCceEEEEEC
Confidence 766689999999976 99999863
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00032 Score=77.63 Aligned_cols=325 Identities=13% Similarity=0.088 Sum_probs=170.6
Q ss_pred CccccccccccccEEEEeccccceee-ecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEee
Q psy14257 228 RHELRGVDLRTFNVIALISSLKNTIA-LDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDW 306 (841)
Q Consensus 228 ~~~I~~~~~~~~~~~~l~~~~~~~~a-vd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~ 306 (841)
.+.+..++..+.+....++....+.+ +.|..+.+ .+|.++ ..+.|.++++..+. .... +..+. .|+|+|+.+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr--~~yv~~-rdg~vsviD~~~~~--~v~~-i~~G~-~~~~i~~s~ 87 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR--YLYVAN-RDGTVSVIDLATGK--VVAT-IKVGG-NPRGIAVSP 87 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS--EEEEEE-TTSEEEEEETTSSS--EEEE-EE-SS-EEEEEEE--
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC--EEEEEc-CCCeEEEEECCccc--EEEE-EecCC-CcceEEEcC
Confidence 46677777776655444444344333 34444333 499986 57899999887654 2333 33443 799999998
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccC-CCccccccccCc------CCCceEEEEccCCEEEEEeCCCCeEEEEEec
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GENRSPLVTKNI------QWPSSLVIDYNQDILYWCDSHLNTVESVRVD 379 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~~~~l~~~~~------~~P~glavD~~~~~lYwaD~~~~~I~~~~ld 379 (841)
.++ |++.+++.. +.+...+.. .+.++.+..... .++.+|.-.+.+...+++-.+.+.|+.+++.
T Consensus 88 DG~--~~~v~n~~~-------~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 88 DGK--YVYVANYEP-------GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp TTT--EEEEEEEET-------TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CCC--EEEEEecCC-------CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 664 555555432 366666643 333333322211 2345676666666666777788999999976
Q ss_pred CCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCC-CCCc--eeEEEcCCCC
Q psy14257 380 GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGD-MESP--RAIALDPRFG 456 (841)
Q Consensus 380 G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~-l~~P--~giavd~~~g 456 (841)
......+...+.-..+... .+|..++.+|.+....+.|.+.++.......++..+ ..+| .+--.||..|
T Consensus 159 d~~~~~~~~i~~g~~~~D~--------~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g 230 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHDG--------GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG 230 (369)
T ss_dssp TSSCEEEEEEE--TTEEEE--------EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred cccccceeeeccccccccc--------ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence 5433322222111111111 233344677887778889999998776555554432 2222 3334788777
Q ss_pred eEEEEecCCCCCeEEEecC------CCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEE---eCCCCeEEEEEcCCCe
Q psy14257 457 LLFWTDWDSKAPRIERCSM------SGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI---DAKSDSIHTVTYDGKD 527 (841)
Q Consensus 457 ~Ly~td~~~~~~~I~r~~l------dG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~---d~~~~~I~~~~~dG~~ 527 (841)
.+ |+..+.....|-.... +-...+++... .....|-.+...+.+.+||+. ....+.|..+|...-.
T Consensus 231 ~v-w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I----~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 231 PV-WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI----PTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EE-EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE----E-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred eE-EeeccccceecccccCCccccchhhcCeEEEEE----ECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 65 5443322233222222 22333344332 123455677788777777665 3556799999887653
Q ss_pred eEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCC-eEEEEeccCCcceEEEecccCCCce
Q psy14257 528 HHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTN-SVIRANKWNGSDVTLIQRTLTQPFI 584 (841)
Q Consensus 528 ~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~-~i~~~~~~~g~~~~~i~~~~~~p~~ 584 (841)
...-+.... -..+..+.+ .+.++|++.|..+ +|..++-.+.+....|. +..|.|
T Consensus 306 ~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G 362 (369)
T PF02239_consen 306 VVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTG 362 (369)
T ss_dssp EEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE----SEEE
T ss_pred eeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCe
Confidence 322111100 112555666 4579999999998 99999988888777776 566666
|
... |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0002 Score=80.11 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=112.7
Q ss_pred ccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccc---eEEEEe-CCCCCccceEEeee----cCc
Q psy14257 239 FNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSN---IDVVVQ-TGLSTAEGLAVDWI----GKN 310 (841)
Q Consensus 239 ~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~---~~~~~~-~~l~~p~giavD~~----~~~ 310 (841)
...+.++.++..+.+|.|... ++ ||++.-..++|++++..++.... ...++. .+...+.|||++|. ..|
T Consensus 20 f~~~~va~GL~~Pw~maflPD-G~--llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n 96 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPD-NQ--LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGN 96 (454)
T ss_pred cEEEEEECCCCCceEEEEcCC-Ce--EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCC
Confidence 456778889999999999875 45 99988767999988654432110 111222 25667899999975 344
Q ss_pred --eeEEEeeecCCCCCCCCCCEEEEccCCC-----cccccccc----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEec
Q psy14257 311 --LYMFWAFWSLSPSNSSDGGIEKAGMHGE-----NRSPLVTK----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD 379 (841)
Q Consensus 311 --~y~~~td~~~~~~~~~~~~I~~~~~dG~-----~~~~l~~~----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld 379 (841)
+|+++|.-..........+|.|+.++.. ..++|+.. ..+.-..|+++++ ++||++--..+.-...+..
T Consensus 97 ~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs~GD~g~~~~~n~~ 175 (454)
T TIGR03606 97 PYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYTIGEQGRNQGANFF 175 (454)
T ss_pred cEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEEECCCCCCCccccc
Confidence 4555443211100012458999887632 12223221 2344556888875 4688875543210000000
Q ss_pred CCccEEEEeeeeecCCCccccCCCCCCccccccceEE--EEecCCCcEEEEccCCce----------EEEEecCCCCCce
Q psy14257 380 GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLY--WVESNLDQIEVAKLSGQF----------RRTLIAGDMESPR 447 (841)
Q Consensus 380 G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY--~tD~~~~~I~v~~~~G~~----------~~~l~~~~l~~P~ 447 (841)
.....+ .++.. ..+- =.....++|.+++.||+. +..+.+-++.+|.
T Consensus 176 ~~~~aQ-------------~~~~~---------~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~ 233 (454)
T TIGR03606 176 LPNQAQ-------------HTPTQ---------QELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQ 233 (454)
T ss_pred Ccchhc-------------ccccc---------ccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccc
Confidence 000000 00000 0000 001235789999999863 2345566889999
Q ss_pred eEEEcCCCCeEEEEecCC
Q psy14257 448 AIALDPRFGLLFWTDWDS 465 (841)
Q Consensus 448 giavd~~~g~Ly~td~~~ 465 (841)
+|++|| .|.||.+|.+.
T Consensus 234 Gla~dp-~G~Lw~~e~Gp 250 (454)
T TIGR03606 234 GLAFTP-DGTLYASEQGP 250 (454)
T ss_pred eeEECC-CCCEEEEecCC
Confidence 999999 69999999764
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG4260|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.1e-07 Score=87.89 Aligned_cols=131 Identities=27% Similarity=0.572 Sum_probs=85.6
Q ss_pred CCCCCCcccCCCCCCCc--cccCCCCCCCCCCccCCCCCCCCC---------CCCCCCCcccCCCCCeEec-CCCCCCCC
Q psy14257 52 CDGQPDCGLNDTSDEDH--CVNDCTDWSDETNCTHSGNRTISA---------PACEPHEFDCQDVLRTCIP-KALVCDGE 119 (841)
Q Consensus 52 Cdg~~dC~~~d~sde~~--C~~dC~~~~de~~C~~c~~~~~c~---------~~C~~~~~~C~~~~~~Ci~-~~~~Cdg~ 119 (841)
|.|.-.|. +|||-+.. | .|..|-....|..|.+..|-. ..|.. .|. +.|.. .+.-|.
T Consensus 152 C~GnG~C~-GdGsR~GsGkC--kC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~---~C~---~~Csg~~~k~C~-- 220 (350)
T KOG4260|consen 152 CFGNGSCH-GDGSREGSGKC--KCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHE---GCL---GVCSGESSKGCS-- 220 (350)
T ss_pred cCCCCccc-CCCCCCCCCcc--cccCCCCCccccccchHHHHhhcccccchhhhhhh---hhh---cccCCCCCCChh--
Confidence 55666665 45655543 3 566666666777765554410 12221 121 22322 245563
Q ss_pred CCCCCCC--CCccc---ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccccccccCC-CCCc---cCceeec
Q psy14257 120 PACFNGE--DEMFC---DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEA-WGTC---SQDCEPS 188 (841)
Q Consensus 120 ~~C~~g~--de~~C---~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~-~~~C---s~~C~~~ 188 (841)
.|..|+ ||..| |||+..+.+|. +.|+|+.|||.|.+.+||+- ++++|+. ...| ...|.++
T Consensus 221 -kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~--------g~d~C~~~~d~~~~kn~~c~ni 291 (350)
T KOG4260|consen 221 -KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK--------GVDECQFCADVCASKNRPCMNI 291 (350)
T ss_pred -hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC--------ChHHhhhhhhhcccCCCCcccC
Confidence 689998 77789 89998877884 69999999999999999973 2556641 1334 2478898
Q ss_pred CCCCceEEeecCCeee
Q psy14257 189 VSNNSYKCTCHAGYEL 204 (841)
Q Consensus 189 ~~~g~~~C~C~~G~~l 204 (841)
.+.|+|.|..|+..
T Consensus 292 --~~~~r~v~f~~~~~ 305 (350)
T KOG4260|consen 292 --DGQYRCVCFSGLII 305 (350)
T ss_pred --CccEEEEeccccee
Confidence 99999999998764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00033 Score=78.98 Aligned_cols=246 Identities=7% Similarity=-0.002 Sum_probs=148.8
Q ss_pred eeEEEec-C--CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcc
Q psy14257 264 MVFWTDV-I--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENR 340 (841)
Q Consensus 264 ~lyw~d~-~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~ 340 (841)
.+|++.. . ..+|+.++.+|. ..+.+...+ .-...+..+.++.+.+|.+.-+ ..+.|++.++.+..+
T Consensus 157 ~~~v~~~~~~~~~~l~~~d~dg~---~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~------~~~~Iyv~dl~tg~~ 225 (419)
T PRK04043 157 KVVFSKYTGPKKSNIVLADYTLT---YQKVIVKGG--LNIFPKWANKEQTAFYYTSYGE------RKPTLYKYNLYTGKK 225 (419)
T ss_pred EEEEEEccCCCcceEEEECCCCC---ceeEEccCC--CeEeEEECCCCCcEEEEEEccC------CCCEEEEEECCCCcE
Confidence 3777763 2 347888877764 334444332 1223445555554444444321 134899999987777
Q ss_pred ccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEE
Q psy14257 341 SPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWV 418 (841)
Q Consensus 341 ~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~t 418 (841)
+.+... -+.....++.+++++|.++-. ....|+.++++|+..+.+........ .-.....++.||++
T Consensus 226 ~~lt~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~----------~p~~SPDG~~I~F~ 294 (419)
T PRK04043 226 EKIASS-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDV----------NGNFVEDDKRIVFV 294 (419)
T ss_pred EEEecC-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccC----------ccEECCCCCEEEEE
Confidence 666531 112223567888888887654 34689999998887666543221000 00122335778887
Q ss_pred ecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC------CCCeEEEecCCCCCcEEEEEecccC
Q psy14257 419 ESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS------KAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 419 D~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~------~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
... ...|++.+++|...+.+...+... .+++|++++|.++.... ....|+.+++++...+.+..
T Consensus 295 Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~----- 366 (419)
T PRK04043 295 SDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA----- 366 (419)
T ss_pred ECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-----
Confidence 643 347999999876664444333222 37899988887776432 12589999998887666644
Q ss_pred CCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCCeeEEEEcCCCCCCcc
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGKDHHVVLSNHDSLTHP 541 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~~~~~l~~P 541 (841)
... -...++.++++.|+++... ...|..++++|.....+....+.+..|
T Consensus 367 ~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 367 NGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred CCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccCCC
Confidence 211 1236678888888887643 336999999998887776544444444
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=62.97 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=33.7
Q ss_pred CCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCce
Q psy14257 788 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR 825 (841)
Q Consensus 788 l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~ 825 (841)
+..|.|||+||..++|||+|+.. ..|+++++||+++
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~--~~I~~~~~~g~~~ 43 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGL--DVIEVANLDGTNR 43 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCC--CEEEEEeCCCCCC
Confidence 89999999999999999999998 4899999999874
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0027 Score=70.36 Aligned_cols=326 Identities=9% Similarity=0.042 Sum_probs=160.4
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+-+|+++...++|.+++.+.......+..+..-+.++++.++.+++|++.. .+.|...++.-.....-+. .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~------~ 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIK------V 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-------
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEe------c
Confidence 445588999999999998764433333333223567888998889999974 4689999886444322222 3
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC-eeEEEEcCCC----CCCcceEEEE--ecCeEEEEeCCCCeEEEEe
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK-DHHVVLSNHD----SLTHPFAIAL--FENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~-~~~~i~~~~~----~l~~P~gla~--~~~~lY~td~~~~~i~~~~ 565 (841)
...|.|+++.++++.||+++...+.+..+|.... -++++..... .-+++.+|.. ....++++-..++.|..++
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 4579999999999999999998999999987653 3344432210 0112334443 2344566667788888887
Q ss_pred ccCCcceEEEec-ccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee--
Q psy14257 566 KWNGSDVTLIQR-TLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-- 642 (841)
Q Consensus 566 ~~~g~~~~~i~~-~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-- 642 (841)
..+.+...+-.. ....|.+ .-+.++ ..+++++
T Consensus 157 y~d~~~~~~~~i~~g~~~~D-------------------------------------~~~dpd--------gry~~va~~ 191 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHD-------------------------------------GGFDPD--------GRYFLVAAN 191 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEE-------------------------------------EEE-TT--------SSEEEEEEG
T ss_pred eccccccceeeecccccccc-------------------------------------cccCcc--------cceeeeccc
Confidence 655443322111 1011111 011111 2223332
Q ss_pred cCCeEEEEecCCCCccccceeecCCCCCc--eEEEEecCCCEEEEEECC-CCeEEEEEcccCceeeeeeeeeeeeccccc
Q psy14257 643 RPREIRGVDLEHPYYHTIPTISIPQVFSP--NNLNFDAANKKIYWTDQE-YNEVKRSSIVGGQIQLVVDAVFEFYLTPLS 719 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~--~~v~~d~~~~~iyw~d~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~ 719 (841)
..+.|-.+++... .....+......++ .+--.+|..+.+|-+... ...|-.+..+--. +
T Consensus 192 ~sn~i~viD~~~~--k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~---v------------- 253 (369)
T PF02239_consen 192 GSNKIAVIDTKTG--KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVS---V------------- 253 (369)
T ss_dssp GGTEEEEEETTTT--EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-----------------
T ss_pred ccceeEEEeeccc--eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccc---c-------------
Confidence 1233444443321 11122223222222 222356666665433321 1111222111000 0
Q ss_pred ccccccCceEEEEeeCCCCCcceeEEeecCCcEEEE-ecCCCCCeEEEEecCCcce-EEEEcCCCCCCCcCCCceEEEEe
Q psy14257 720 KRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIA-VSSPTQSKIVVCNLEGEYQ-TTILSNESNDTSTLSKISSIAVW 797 (841)
Q Consensus 720 ~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~-~~~~~~~~I~v~~l~g~~~-~~~~~~~~~~~~~l~~p~~iavd 797 (841)
.....-...+.|-. .+.|..++..+.+++||+. -++...+.|.+++...-.. ..+... .-..+..+...
T Consensus 254 -~d~~~wkvv~~I~~--~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~------~~~~~~h~ef~ 324 (369)
T PF02239_consen 254 -HDDYAWKVVKTIPT--QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG------PGKRVVHMEFN 324 (369)
T ss_dssp -STTTBTSEEEEEE---SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH------HT--EEEEEE-
T ss_pred -chhhcCeEEEEEEC--CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc------CCCcEeccEEC
Confidence 00001111333322 3456889999999999887 1113467899988876532 222211 01358899999
Q ss_pred CCCCeEEEEecCCCcceEEEEec
Q psy14257 798 PVKGKMFWSNVTKQVVTIEMAFM 820 (841)
Q Consensus 798 ~~~g~lyw~d~~~~~~~I~~~~~ 820 (841)
+...++|.+.|..+ ++|...+.
T Consensus 325 ~dG~~v~vS~~~~~-~~i~v~D~ 346 (369)
T PF02239_consen 325 PDGKEVWVSVWDGN-GAIVVYDA 346 (369)
T ss_dssp TTSSEEEEEEE--T-TEEEEEET
T ss_pred CCCCEEEEEEecCC-CEEEEEEC
Confidence 99999999999876 35555443
|
... |
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.3e-07 Score=61.33 Aligned_cols=32 Identities=56% Similarity=1.315 Sum_probs=29.4
Q ss_pred CCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCC
Q psy14257 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE 66 (841)
Q Consensus 32 C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde 66 (841)
|...+|+|. ++.|||..++|||..||. |+|||
T Consensus 2 C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~--dgsDE 33 (33)
T smart00192 2 CPPGEFQCD-NGRCIPLSWVCDGVDDCS--DGSDE 33 (33)
T ss_pred CCCCeEECC-CCCEECchhhCCCcCcCc--CCCCC
Confidence 666799998 888999999999999999 99987
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. |
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.6e-07 Score=62.12 Aligned_cols=37 Identities=54% Similarity=1.235 Sum_probs=33.3
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
++|.+++|.|.+ +.||+..++|||..+|.+|+||..|
T Consensus 1 ~~C~~~~f~C~~--~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 1 PTCPPGEFRCGN--GQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSSTTEEEETT--SSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred CcCcCCeeEcCC--CCEEChHHcCCCCCCCCCCcccccC
Confidence 358889999998 6799999999999999999999765
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A .... |
| >KOG1219|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-06 Score=105.80 Aligned_cols=97 Identities=26% Similarity=0.614 Sum_probs=79.1
Q ss_pred cccCCCCCeEecC---CCCCCCCCCCCCCCCCccc----ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 100 FDCQDVLRTCIPK---ALVCDGEPACFNGEDEMFC----DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 100 ~~C~~~~~~Ci~~---~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
.+|+++ |.|++. .+.| .|+..|.+..| ..|.. .+|. ..|....++|.|.|+.||. |..|+
T Consensus 3870 npCqhg-G~C~~~~~ggy~C----kCpsqysG~~CEi~~epC~s--nPC~~GgtCip~~n~f~CnC~~gyT----G~~Ce 3938 (4289)
T KOG1219|consen 3870 NPCQHG-GTCISQPKGGYKC----KCPSQYSGNHCEIDLEPCAS--NPCLTGGTCIPFYNGFLCNCPNGYT----GKRCE 3938 (4289)
T ss_pred CcccCC-CEecCCCCCceEE----eCcccccCcccccccccccC--CCCCCCCEEEecCCCeeEeCCCCcc----Cceee
Confidence 479999 999987 6789 99999999889 55764 3674 5899999999999999996 77887
Q ss_pred c--ccccCCCCCcc--CceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 171 Y--LHPCEAWGTCS--QDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 171 ~--~~eC~~~~~Cs--~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
. ++||. ...|. .+|.|. .|+|.|.|.+||. +++|.+.
T Consensus 3939 ~~Gi~eCs-~n~C~~gg~C~n~--~gsf~CncT~g~~----gr~c~~~ 3979 (4289)
T KOG1219|consen 3939 ARGISECS-KNVCGTGGQCINI--PGSFHCNCTPGIL----GRTCCAE 3979 (4289)
T ss_pred cccccccc-cccccCCceeecc--CCceEeccChhHh----cccCccc
Confidence 4 67894 45774 499999 9999999999986 4566443
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0012 Score=70.30 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=121.2
Q ss_pred eeEEEeccCCEEEEEeCCC------------CeEEEEEcCCCee-EEEEcCCCCC---CcceEEEEec-------CeEEE
Q psy14257 497 NGLTLDYQLTRIYWIDAKS------------DSIHTVTYDGKDH-HVVLSNHDSL---THPFAIALFE-------NHVYW 553 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~------------~~I~~~~~dG~~~-~~i~~~~~~l---~~P~gla~~~-------~~lY~ 553 (841)
.++.+| ..++|++.|.+. -+|..+|+....+ +++.-....+ .....|+++. +++|+
T Consensus 4 ~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred cEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 577888 578888888653 3788888876543 3322221112 1234566654 68999
Q ss_pred EeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccc
Q psy14257 554 TDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633 (841)
Q Consensus 554 td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~ 633 (841)
||.....|+.++..+|+...+...... | .+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~-~--------------------------~p----------------------- 112 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFS-P--------------------------DP----------------------- 112 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCT-T--------------------------S------------------------
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcc-e--------------------------ec-----------------------
Confidence 999999999999988887776553211 0 00
Q ss_pred cCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEec---CCCEEEEEECCCCeEEEEEcccCceeeeeeee
Q psy14257 634 ADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDA---ANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAV 710 (841)
Q Consensus 634 ~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~---~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~ 710 (841)
....+.+ ....+ ... ..+.+++-.+ .++.|||.-....+++++...--.
T Consensus 113 -~~~~~~i--~g~~~--~~~---------------dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~-------- 164 (287)
T PF03022_consen 113 -DAGPFTI--GGESF--QWP---------------DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLR-------- 164 (287)
T ss_dssp -SSEEEEE--TTEEE--EET---------------TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHC--------
T ss_pred -cccceec--cCceE--ecC---------------CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhh--------
Confidence 0000111 01110 000 0022333322 447899999888889998753110
Q ss_pred eeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc----ceEEEEcCCCCCCC
Q psy14257 711 FEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE----YQTTILSNESNDTS 786 (841)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~----~~~~~~~~~~~~~~ 786 (841)
.+..........+.+.+-.. .....|+++|. .++||++ +..++.|.+.+.++. ..++++.+. -
T Consensus 165 -----~~~~~~~~~~~~~v~~lG~k-~~~s~g~~~D~-~G~ly~~--~~~~~aI~~w~~~~~~~~~~~~~l~~d~----~ 231 (287)
T PF03022_consen 165 -----DPSLSDAQALASQVQDLGDK-GSQSDGMAIDP-NGNLYFT--DVEQNAIGCWDPDGPYTPENFEILAQDP----R 231 (287)
T ss_dssp -----STT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEE--ECCCTEEEEEETTTSB-GCCEEEEEE-C----C
T ss_pred -----Cccccccccccccceecccc-CCCCceEEECC-CCcEEEe--cCCCCeEEEEeCCCCcCccchheeEEcC----c
Confidence 00000000001112232221 14568999998 7799999 568999999999993 345666641 1
Q ss_pred cCCCceEEEEeC-CCCeEEEEecC
Q psy14257 787 TLSKISSIAVWP-VKGKMFWSNVT 809 (841)
Q Consensus 787 ~l~~p~~iavd~-~~g~lyw~d~~ 809 (841)
.|..|.+|++++ ..|+||++...
T Consensus 232 ~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 232 TLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp -GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eeeccceeeeccccCceEEEEECc
Confidence 288999999997 45899998753
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00037 Score=68.64 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=67.6
Q ss_pred ecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec--CC---CCCcEEEEEecc-cCCCCCCceeEEEeccCCEEEEEe
Q psy14257 439 IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS--MS---GEHRSVIVRVDL-LTSRGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 439 ~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~--ld---G~~~~~i~~~~~-~~~~~~~P~glalD~~~~~LYw~d 512 (841)
+...+.-|+||+-|.+...+|++|.. +..|...+ .. -++++++++..- .+..-..|.|++||. ++.||++-
T Consensus 153 i~~~v~IsNgl~Wd~d~K~fY~iDsl--n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~ 229 (310)
T KOG4499|consen 153 IWNCVGISNGLAWDSDAKKFYYIDSL--NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVAT 229 (310)
T ss_pred eehhccCCccccccccCcEEEEEccC--ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEE
Confidence 44566779999999999999999977 77884444 43 357888876421 122345799999995 89999999
Q ss_pred CCCCeEEEEEcCC-CeeEEEE
Q psy14257 513 AKSDSIHTVTYDG-KDHHVVL 532 (841)
Q Consensus 513 ~~~~~I~~~~~dG-~~~~~i~ 532 (841)
...++|+++++.. +-...+.
T Consensus 230 ~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEE
Confidence 9999999999864 4444443
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.3e-06 Score=60.78 Aligned_cols=40 Identities=35% Similarity=0.722 Sum_probs=35.5
Q ss_pred EeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcc
Q psy14257 732 VVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773 (841)
Q Consensus 732 i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~ 773 (841)
++..++..|.|||+||.+++|||+ |...+.|++++++|..
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~--D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWT--DWGLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEE--eCCCCEEEEEeCCCCC
Confidence 455688999999999999999999 5678999999999975
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-06 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=22.8
Q ss_pred CcEEecCCCceecCCCCccccccc
Q psy14257 151 GFMCVCPRDMYLQPDLITCSYLHP 174 (841)
Q Consensus 151 ~~~C~C~~Gy~l~~d~~~C~~~~e 174 (841)
||+|.|++||+|.+++++|.|+||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 699999999999999999999986
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00061 Score=77.87 Aligned_cols=227 Identities=13% Similarity=0.049 Sum_probs=138.7
Q ss_pred CCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 328 GGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
.+|+.++.||.+.+.+... -..-...++.+++++|+|+... ...|+.++++++..+.+........ .
T Consensus 198 ~~l~i~d~dG~~~~~l~~~-~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~----------~ 266 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRS-PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING----------A 266 (448)
T ss_pred eEEEEEeCCCCCceEeecC-CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC----------C
Confidence 4788888999877765432 1223457888899999887543 4579999998877665543221100 0
Q ss_pred CccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 406 EDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
.+....++.|+++... ...|++.++++...+.+.. ........+++|++.+|+++........|+++++++...+.+
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 1233345678776433 3368888988766554433 223445678888888888775433467999999986655544
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCC--
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN-- 559 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~-- 559 (841)
.. ......+.++.++++.||++.... ..|+.+++++...+.+.... .-..| .++..+..|+++....+
T Consensus 346 t~------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~p-s~spdG~~I~~~~~~~g~~ 417 (448)
T PRK04792 346 TF------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR-LDESP-SVAPNGTMVIYSTTYQGKQ 417 (448)
T ss_pred ec------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC-CCCCc-eECCCCCEEEEEEecCCce
Confidence 32 112234567888888998876543 37888999887766553321 11234 34445677777664433
Q ss_pred eEEEEeccCCcceEEE
Q psy14257 560 SVIRANKWNGSDVTLI 575 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i 575 (841)
.++.++. +|.....+
T Consensus 418 ~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 418 VLAAVSI-DGRFKARL 432 (448)
T ss_pred EEEEEEC-CCCceEEC
Confidence 2555554 45544433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.001 Score=75.98 Aligned_cols=230 Identities=13% Similarity=0.041 Sum_probs=132.2
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCce
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 353 (841)
+|+.++.+|.. .+.+.. +-.....+++.|.++.+++ +... .....|++.++++...+.+.... .....
T Consensus 199 ~l~i~d~dG~~---~~~l~~-~~~~~~~p~wSPDG~~La~--~s~~-----~g~~~L~~~dl~tg~~~~lt~~~-g~~~~ 266 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLR-SPEPLMSPAWSPDGRKLAY--VSFE-----NRKAEIFVQDIYTQVREKVTSFP-GINGA 266 (448)
T ss_pred EEEEEeCCCCC---ceEeec-CCCcccCceECCCCCEEEE--EEec-----CCCcEEEEEECCCCCeEEecCCC-CCcCC
Confidence 45556665532 223322 2222334566666544433 3211 11247999998876555443221 22346
Q ss_pred EEEEccCCEEEEEeCCC--CeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CCcEEEEc
Q psy14257 354 LVIDYNQDILYWCDSHL--NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LDQIEVAK 429 (841)
Q Consensus 354 lavD~~~~~lYwaD~~~--~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~~I~v~~ 429 (841)
.++.+++++|+++-... ..|+.++++++..+.+..... .+. ..+....++.|+++... ...|++++
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~--~~~--------~p~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA--IDT--------EPSWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC--Ccc--------ceEECCCCCEEEEEECCCCCceEEEEE
Confidence 78999999998864433 369999998876655432110 000 01122234667776432 35788888
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
+++...+.+...+ ....+.++.|+..+||++.......+|++.++++...+.+.. ... ....++.+.++.|+
T Consensus 337 l~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-----~~~--d~~ps~spdG~~I~ 408 (448)
T PRK04792 337 LASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-----TRL--DESPSVAPNGTMVI 408 (448)
T ss_pred CCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-----CCC--CCCceECCCCCEEE
Confidence 8765444433222 223456889998899888754335689999998876655433 111 11235777788888
Q ss_pred EEeCCC--CeEEEEEcCCCeeEEEEc
Q psy14257 510 WIDAKS--DSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 510 w~d~~~--~~I~~~~~dG~~~~~i~~ 533 (841)
++.... ..|+.++.+|...+.+..
T Consensus 409 ~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred EEEecCCceEEEEEECCCCceEECcC
Confidence 866433 358888999987776643
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=67.86 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=58.3
Q ss_pred eeEEEcCCCCeEEEEecCC---------------CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEE
Q psy14257 447 RAIALDPRFGLLFWTDWDS---------------KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI 511 (841)
Q Consensus 447 ~giavd~~~g~Ly~td~~~---------------~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~ 511 (841)
++|+|++..|.||+||... .++++.+.++.....+++.. ++..|||+++.+++..|+++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~------~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD------GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE------EESSEEEEEE-TTSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh------CCCccCeEEEcCCCCEEEEE
Confidence 4789998889999999643 36789999998877777776 78999999999999999999
Q ss_pred eCCCCeEEEEEcCC
Q psy14257 512 DAKSDSIHTVTYDG 525 (841)
Q Consensus 512 d~~~~~I~~~~~dG 525 (841)
+....+|.++-+.|
T Consensus 75 Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 75 ETGRYRILRYWLKG 88 (89)
T ss_dssp EGGGTEEEEEESSS
T ss_pred eccCceEEEEEEeC
Confidence 99999999998877
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-06 Score=59.87 Aligned_cols=35 Identities=51% Similarity=1.187 Sum_probs=31.7
Q ss_pred CCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 95 C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
|.+++|.|.+ +.||+..++|||..+|++|+||..|
T Consensus 1 C~~~~f~C~~--~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCAN--GRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCC--CCeeCHHHcCCCccCCCCCcccccC
Confidence 5567899988 9999999999999999999999765
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00025 Score=79.38 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=106.7
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeee----cCCCccccCCCCCCccccccceEEEE
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL----GSDSRVGIPNCRPEDNLWIGKNLYWV 418 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~----~~~~~~~i~~~~~~avdw~~~~LY~t 418 (841)
++.+.|..|.+|++.++ ++||++....++|++++.++...+.+..+..+ +....++++..-..+-...++.||++
T Consensus 24 ~va~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEECCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 34568999999999885 68999999889999998776555444333211 12222333211000000234789987
Q ss_pred ec---------CCCcEEEEccCCc-----eEEEEecC----CCCCceeEEEcCCCCeEEEEecCC---------------
Q psy14257 419 ES---------NLDQIEVAKLSGQ-----FRRTLIAG----DMESPRAIALDPRFGLLFWTDWDS--------------- 465 (841)
Q Consensus 419 D~---------~~~~I~v~~~~G~-----~~~~l~~~----~l~~P~giavd~~~g~Ly~td~~~--------------- 465 (841)
-+ ...+|.++.++.. ..++++.. ..+.-..|+++|+ |+||++--..
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs~GD~g~~~~~n~~~~~~aQ 181 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYTIGEQGRNQGANFFLPNQAQ 181 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEEECCCCCCCcccccCcchhc
Confidence 42 2457888887631 12344432 1234567999986 8899984221
Q ss_pred ---------------CCCeEEEecCCCCC----------cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC
Q psy14257 466 ---------------KAPRIERCSMSGEH----------RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516 (841)
Q Consensus 466 ---------------~~~~I~r~~ldG~~----------~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~ 516 (841)
..++|.|++.||+- +..|.. .+++.|.||++|+ +++||.+|.+.+
T Consensus 182 ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA-----~G~RNp~Gla~dp-~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 182 HTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFT-----YGHRNPQGLAFTP-DGTLYASEQGPN 251 (454)
T ss_pred cccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEE-----EeccccceeEECC-CCCEEEEecCCC
Confidence 13489999999973 234444 5889999999998 799999997654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0019 Score=72.98 Aligned_cols=217 Identities=7% Similarity=-0.059 Sum_probs=135.2
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCE-EEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDI-LYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC 403 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~-lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~ 403 (841)
..+|+.++.||.+.+++.... .-....+.+++++ +|++... ...|+.+++.++.++.+.........
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~-------- 237 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVV-------- 237 (419)
T ss_pred cceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEe--------
Confidence 358999999999888776543 2235677777775 7776554 57899999998888777532111000
Q ss_pred CCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcE
Q psy14257 404 RPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRS 481 (841)
Q Consensus 404 ~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~ 481 (841)
.++...++.|.++.. +...|+++++++...+.+..... .-..-.+.|+...||++......+.|++++++|...+
T Consensus 238 --~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 238 --SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred --eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 011122356776543 34689999988776554433221 1123368888778888864444679999999987765
Q ss_pred EEEEecccCCCCCCceeEEEeccCCEEEEEeCCC--------CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEE
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--------DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYW 553 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--------~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~ 553 (841)
.+.. ..... ..+++++++|.++.... ..|+.+++++...+.+.... ....| ..+-.+..||+
T Consensus 315 rlt~-----~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p-~~SPDG~~I~f 384 (419)
T PRK04043 315 QVVF-----HGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFP-RFSSDGGSIMF 384 (419)
T ss_pred eCcc-----CCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCe-EECCCCCEEEE
Confidence 5543 12122 37788888887775432 48999999988776665432 12222 34445667777
Q ss_pred EeCCC--CeEEEEec
Q psy14257 554 TDWRT--NSVIRANK 566 (841)
Q Consensus 554 td~~~--~~i~~~~~ 566 (841)
+.... ..+..++.
T Consensus 385 ~~~~~~~~~L~~~~l 399 (419)
T PRK04043 385 IKYLGNQSALGIIRL 399 (419)
T ss_pred EEccCCcEEEEEEec
Confidence 65432 23556665
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0014 Score=71.73 Aligned_cols=143 Identities=14% Similarity=0.084 Sum_probs=87.7
Q ss_pred CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC---CCC-eEEEe---------------------cCCC
Q psy14257 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS---KAP-RIERC---------------------SMSG 477 (841)
Q Consensus 423 ~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~---~~~-~I~r~---------------------~ldG 477 (841)
..|...+.++...++ .+-++.+|.|++.+|..|.||.++.+. ..+ .|.+. ..++
T Consensus 219 a~~~~~d~p~~~~~i-~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~ 297 (399)
T COG2133 219 AGIIPADNPFPNSEI-WSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDG 297 (399)
T ss_pred CcccccCCCCCCcce-EEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCC
Confidence 345556666665443 345789999999999999999999774 101 01111 0111
Q ss_pred CCcEEEEEecccCCCCCCceeEEEeccC------CEEEEEeCCCCeEEEEEcCCC---eeEEEEcCCCCCCcceEEEE-e
Q psy14257 478 EHRSVIVRVDLLTSRGAWPNGLTLDYQL------TRIYWIDAKSDSIHTVTYDGK---DHHVVLSNHDSLTHPFAIAL-F 547 (841)
Q Consensus 478 ~~~~~i~~~~~~~~~~~~P~glalD~~~------~~LYw~d~~~~~I~~~~~dG~---~~~~i~~~~~~l~~P~gla~-~ 547 (841)
.....+......-..-..|.||++=.-+ +.||++..+.-.+.+.+++|. ...-++... ...+|.+|++ .
T Consensus 298 ~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d-~~gR~~dV~v~~ 376 (399)
T COG2133 298 TVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGD-LGGRPRDVAVAP 376 (399)
T ss_pred cccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecC-CCCcccceEECC
Confidence 1111111000000112346888884211 689988877777888999998 444455432 2368999999 5
Q ss_pred cCeEEEEeCC-CCeEEEEecc
Q psy14257 548 ENHVYWTDWR-TNSVIRANKW 567 (841)
Q Consensus 548 ~~~lY~td~~-~~~i~~~~~~ 567 (841)
+|.||+++.. +++|+|+...
T Consensus 377 DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 377 DGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred CCeEEEeecCCCCeEEEecCC
Confidence 7999999988 6699998753
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0023 Score=73.11 Aligned_cols=229 Identities=11% Similarity=0.056 Sum_probs=134.2
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCce
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 353 (841)
+|+.++.+|+. .+.+. .+-.....+++.+.++.+++. ++. ...+.|++.++++...+.+... -+.-.+
T Consensus 183 ~l~~~d~dg~~---~~~lt-~~~~~v~~p~wSpDG~~lay~-s~~------~g~~~i~~~dl~~g~~~~l~~~-~g~~~~ 250 (435)
T PRK05137 183 RLAIMDQDGAN---VRYLT-DGSSLVLTPRFSPNRQEITYM-SYA------NGRPRVYLLDLETGQRELVGNF-PGMTFA 250 (435)
T ss_pred EEEEECCCCCC---cEEEe-cCCCCeEeeEECCCCCEEEEE-Eec------CCCCEEEEEECCCCcEEEeecC-CCcccC
Confidence 67777666543 22222 222233345555555444332 211 1235899999877655544321 122346
Q ss_pred EEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CCcEEEEc
Q psy14257 354 LVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LDQIEVAK 429 (841)
Q Consensus 354 lavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~~I~v~~ 429 (841)
.++.+++++|+++-.. ...|+.++++++..+.+........ ..+....++.|+++... ...|++.+
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~----------~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT----------SPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC----------ceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 7888888888776443 4569999998877665532111000 01122234667665432 34788999
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
++|...+.+.... ..-...++.|++.+|+++.......+|+..+++|...+.+.. . .....+++.+.++.||
T Consensus 321 ~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-----~--~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 321 ADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-----G--FLVEGPTWAPNGRVIM 392 (435)
T ss_pred CCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-----C--CCCCCCeECCCCCEEE
Confidence 9887655544321 223446788998899887654334689999998876655432 1 1345677888888888
Q ss_pred EEeCCC-----CeEEEEEcCCCeeEEEE
Q psy14257 510 WIDAKS-----DSIHTVTYDGKDHHVVL 532 (841)
Q Consensus 510 w~d~~~-----~~I~~~~~dG~~~~~i~ 532 (841)
++-... ..|+.++++|...+.+.
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEccCCCCCcceEEEEECCCCceEEcc
Confidence 765322 47999999998776554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00098 Score=68.36 Aligned_cols=195 Identities=15% Similarity=0.115 Sum_probs=132.0
Q ss_pred CceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEE-EecCCCcEEEEc
Q psy14257 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYW-VESNLDQIEVAK 429 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~-tD~~~~~I~v~~ 429 (841)
-++|++++++++||-+--+--.|..++.+|.-.+.+- +.. ...|+++.|++++.|+ +|....++.++.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g----------~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTG----------FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccc----------cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 6799999999999999888888999999997655431 111 1246789999999996 677788888877
Q ss_pred cCCc--eEEE-----EecCC---CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec---ccCCCCCCc
Q psy14257 430 LSGQ--FRRT-----LIAGD---MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD---LLTSRGAWP 496 (841)
Q Consensus 430 ~~G~--~~~~-----l~~~~---l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~---~~~~~~~~P 496 (841)
++-. .... -+... -..=.|+|-||.++.||++-.. +--+|+.....-+....-+... ...-.+..-
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr-~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER-NPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc-CCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 6543 2211 11111 1234699999999999998754 2347777775432211111100 000123446
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC------CCCCCcceEEEEe-cCeEEEEeCC
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN------HDSLTHPFAIALF-ENHVYWTDWR 557 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~------~~~l~~P~gla~~-~~~lY~td~~ 557 (841)
.|+.+|..++.|++.-.....+..++.+|.-+..+.-. ...+++|-|||.+ +|.||++.-.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 89999999999999888889999999999865544221 1236789999995 5899988643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.004 Score=71.12 Aligned_cols=221 Identities=10% Similarity=-0.004 Sum_probs=135.8
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
..+|+.++.+|...+.+... -..-...++.+++++|+++.. ....|+..+++++.++.+........
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~-~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~---------- 249 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDG-SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF---------- 249 (435)
T ss_pred ceEEEEECCCCCCcEEEecC-CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc----------
Confidence 45899999999888776532 223446778888888887754 34689999998877665543211000
Q ss_pred CCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 405 PEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
..++...++.|+++-.. ...|++.++++...+.+.. ........++.|+..+|+++.......+|++.+++|...+.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence 01222334677766433 4568888988776655443 22234557888887777766533235799999999877666
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCC
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRT 558 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~ 558 (841)
+.. .. ..-...++.+++++|+++.... ..|..++++|...+.+.... . ...+++ .+..||++-...
T Consensus 329 lt~-----~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~-~---~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 329 ISF-----GG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF-L---VEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred eec-----CC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC-C---CCCCeECCCCCEEEEEEccC
Confidence 643 11 1123456777888888876433 47888999887765553321 1 223344 456777754322
Q ss_pred -----CeEEEEeccCC
Q psy14257 559 -----NSVIRANKWNG 569 (841)
Q Consensus 559 -----~~i~~~~~~~g 569 (841)
..++.++..++
T Consensus 399 ~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 399 GSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCCcceEEEEECCCC
Confidence 35777776433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.004 Score=71.06 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=63.2
Q ss_pred cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 424 QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 424 ~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
.|++.++++...+.+...+ .....++++|+..+|+++........|+..++++...+.+.. .. .....++.+
T Consensus 317 ~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-----~~--~~~~p~~sp 388 (433)
T PRK04922 317 QIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-----GS--LDESPSFAP 388 (433)
T ss_pred eEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-----CC--CCCCceECC
Confidence 4556665544333332222 234467899998899887643224579999987766554432 11 223457777
Q ss_pred cCCEEEEEeCC--CCeEEEEEcCCCeeEEEEc
Q psy14257 504 QLTRIYWIDAK--SDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 504 ~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~ 533 (841)
.+..|+++... ...|+.++++|...+.+..
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 77788876543 4579999999987766643
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0038 Score=64.59 Aligned_cols=231 Identities=11% Similarity=0.116 Sum_probs=140.1
Q ss_pred cccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec-----CCccEEEEeeee----ecCCCccccCCCCCCcc----
Q psy14257 342 PLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD-----GSERTVSFNLEV----LGSDSRVGIPNCRPEDN---- 408 (841)
Q Consensus 342 ~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld-----G~~~~~~~~~~~----~~~~~~~~i~~~~~~av---- 408 (841)
..+...+..|.||++.+ ++.++++|...+..-.++.+ |.....+..+.. ..+..+.|+-.....++
T Consensus 16 ~~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred cccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 33456788999999987 46888899988888887777 444333322210 00111111111100000
Q ss_pred ---ccccceEEEEecCCCcEEEEccC--Cc---eEEEEecCC--CCCceeEEEcCC--CCeEEEEecCCCCCeEEEecCC
Q psy14257 409 ---LWIGKNLYWVESNLDQIEVAKLS--GQ---FRRTLIAGD--MESPRAIALDPR--FGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 409 ---dw~~~~LY~tD~~~~~I~v~~~~--G~---~~~~l~~~~--l~~P~giavd~~--~g~Ly~td~~~~~~~I~r~~ld 476 (841)
.-....|+.++ .++|.-.+.. -. ...+++... -.--+|||+-.. ..+||-+|.. +++|..++
T Consensus 95 ~g~~~~a~Fif~tE--dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~--~g~IDVFd-- 168 (336)
T TIGR03118 95 EGITGPSRFLFVTE--DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR--QGRIDVFK-- 168 (336)
T ss_pred CCcccceeEEEEeC--CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC--CCceEEec--
Confidence 00112355554 4566655542 12 111223211 223467887754 5799999997 78998884
Q ss_pred CCCcEEEEEeccc-C--CCCCCceeEEEeccCCEEEEEe-------------CCCCeEEEEEcCCCeeEEEEcCCCCCCc
Q psy14257 477 GEHRSVIVRVDLL-T--SRGAWPNGLTLDYQLTRIYWID-------------AKSDSIHTVTYDGKDHHVVLSNHDSLTH 540 (841)
Q Consensus 477 G~~~~~i~~~~~~-~--~~~~~P~glalD~~~~~LYw~d-------------~~~~~I~~~~~dG~~~~~i~~~~~~l~~ 540 (841)
++.+++....... + ..-..|.+|.- .+++||++- .+.+.|..++++|..++.+.+. +.|..
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~-g~LNa 245 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS-GRLNA 245 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC-CcccC
Confidence 4433322210000 0 12245666654 479999974 3456999999999999998765 46899
Q ss_pred ceEEEE-------ecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCC
Q psy14257 541 PFAIAL-------FENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQP 582 (841)
Q Consensus 541 P~gla~-------~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p 582 (841)
|+||++ +.+.|.+.+...++|-..+..+|+.+-.+.....+|
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence 999998 348999999999999999988888766555443333
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12999 PRKCSH-like: Glucosidase II beta subunit-like | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.6e-06 Score=78.02 Aligned_cols=57 Identities=40% Similarity=0.569 Sum_probs=49.5
Q ss_pred ccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCC---eEecCCCCCCCCCC---cccCCCCCC
Q psy14257 4 IIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL---RCIPLAWACDGQPD---CGLNDTSDE 66 (841)
Q Consensus 4 i~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~---~Ci~~~~~Cdg~~d---C~~~d~sde 66 (841)
|+.+.+.|+.-||.|||||- ....|..+.|.|.+.| .-||.++|=||.-| |= |||||
T Consensus 48 I~~~~iNDdyCDC~DGSDEP----GTsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CC--DGSDE 110 (176)
T PF12999_consen 48 IPFSQINDDYCDCPDGSDEP----GTSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICC--DGSDE 110 (176)
T ss_pred ecHHHccCcceeCCCCCCcc----ccccCcCceEeeccCCCCCceeehhhhcCCcCcccccC--CCCCC
Confidence 56778899999999999997 3567888899997555 68999999999999 99 99988
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0029 Score=72.12 Aligned_cols=219 Identities=12% Similarity=0.088 Sum_probs=133.4
Q ss_pred CCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 328 GGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
..|..++.+|...+.+.... ..-...++.+++++|+++... ...|+.++++++.++.+........ .
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~----------~ 252 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSA-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING----------A 252 (433)
T ss_pred EEEEEECCCCCCceEeecCC-CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc----------C
Confidence 46888899988777765431 223467888888888888653 4579999998877766543211100 0
Q ss_pred CccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 406 EDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 406 ~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
.++...+++|+++-. +...|++.++++...+.+.. ........+++|+..+|+++........|++.++++...+.+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 123334567877643 33479999998766554432 222335678899877777764322357899999987655544
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCC--CC
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWR--TN 559 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~--~~ 559 (841)
.. .......+++.++++.|+++.... ..|..+++++...+.+.... ....| .++-.+.+|+++... ..
T Consensus 332 t~------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~~~p-~~spdG~~i~~~s~~~g~~ 403 (433)
T PRK04922 332 TF------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LDESP-SFAPNGSMVLYATREGGRG 403 (433)
T ss_pred ec------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CCCCc-eECCCCCEEEEEEecCCce
Confidence 33 112344678888888998876433 36889999877665443321 11222 233345566666543 33
Q ss_pred eEEEEec
Q psy14257 560 SVIRANK 566 (841)
Q Consensus 560 ~i~~~~~ 566 (841)
.|+.++.
T Consensus 404 ~L~~~~~ 410 (433)
T PRK04922 404 VLAAVST 410 (433)
T ss_pred EEEEEEC
Confidence 5666665
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0074 Score=68.83 Aligned_cols=229 Identities=9% Similarity=0.026 Sum_probs=131.3
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCce
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 353 (841)
+|+.++.+|+. ...+... -.....+++.+.++.++ ++... .....|++.++++...+.+.... +....
T Consensus 180 ~l~~~d~~g~~---~~~l~~~-~~~~~~p~wSpDG~~la--~~s~~-----~~~~~l~~~~l~~g~~~~l~~~~-g~~~~ 247 (430)
T PRK00178 180 TLQRSDYDGAR---AVTLLQS-REPILSPRWSPDGKRIA--YVSFE-----QKRPRIFVQNLDTGRREQITNFE-GLNGA 247 (430)
T ss_pred EEEEECCCCCC---ceEEecC-CCceeeeeECCCCCEEE--EEEcC-----CCCCEEEEEECCCCCEEEccCCC-CCcCC
Confidence 36666666542 2233222 11224455665554443 22211 12347999998876655553221 22345
Q ss_pred EEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CCcEEEEc
Q psy14257 354 LVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LDQIEVAK 429 (841)
Q Consensus 354 lavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~~I~v~~ 429 (841)
.++.+++++|+++-.. ...|+.++++++..+.+........ .......++.||++... ...|++.+
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~----------~~~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT----------EPFWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC----------CeEECCCCCEEEEEECCCCCceEEEEE
Confidence 7888888999876543 3479999998877665432110000 00122234677776432 34788888
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
+++...+.+...+ ......+++|..++|+++........|+..++++...+.+.. .. ......+.+.++.|+
T Consensus 318 ~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-----~~--~~~~p~~spdg~~i~ 389 (430)
T PRK00178 318 VNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-----TS--LDESPSVAPNGTMLI 389 (430)
T ss_pred CCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-----CC--CCCCceECCCCCEEE
Confidence 8765444433222 223346788998899988754234579999998776655543 11 122346777788888
Q ss_pred EEeCC--CCeEEEEEcCCCeeEEEE
Q psy14257 510 WIDAK--SDSIHTVTYDGKDHHVVL 532 (841)
Q Consensus 510 w~d~~--~~~I~~~~~dG~~~~~i~ 532 (841)
++... ...|+.++++|...+.+.
T Consensus 390 ~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred EEEecCCceEEEEEECCCCceEECc
Confidence 87643 357888999887765553
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0042 Score=70.45 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=135.4
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCC--CeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL--NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~--~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
...|+..+.+|...+.+.... ..-...++.+++++|+|+.... ..|+.++++++..+.+........
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~---------- 237 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG---------- 237 (417)
T ss_pred cceEEEEcCCCCCCEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc----------
Confidence 447889999988777765432 1223456888899999987643 678999988765554432210000
Q ss_pred CCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 405 PEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
..++...++.||++... ...|+..++++...+.+.... ......++.|+..+|+++........|++.++++...+.
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR 316 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 01222234668776543 346888888876554443221 222345678877788776533235689999998776555
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCC-
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN- 559 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~- 559 (841)
+.. .......+++.+.++.|+++.... ..|..+++++...+.+.... ....| .++..+.+|+++....+
T Consensus 317 l~~------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~p-~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 317 LTF------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG-LDESP-SFAPNGRMILYATTRGGR 388 (417)
T ss_pred eec------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC-CCCCc-eECCCCCEEEEEEeCCCc
Confidence 443 233456678888888888887543 37889999886665554321 12222 33445677877765443
Q ss_pred eEEEEeccCCcceE
Q psy14257 560 SVIRANKWNGSDVT 573 (841)
Q Consensus 560 ~i~~~~~~~g~~~~ 573 (841)
....+...+|....
T Consensus 389 ~~l~~~~~~g~~~~ 402 (417)
T TIGR02800 389 GVLGLVSTDGRFRA 402 (417)
T ss_pred EEEEEEECCCceee
Confidence 23334334454433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.011 Score=67.21 Aligned_cols=227 Identities=10% Similarity=0.021 Sum_probs=130.2
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCE---EEEEeC-CCCeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDI---LYWCDS-HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~---lYwaD~-~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
...|+.++.||.+.+.|....- .-..-++.+++++ +|++.. ....|+..+++|+..+.+.........
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~~-~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~------- 235 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEHS-LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLM------- 235 (428)
T ss_pred cceEEEEcCCCCCceEcccCCC-CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccc-------
Confidence 5689999999998888754311 1122367777654 345554 345799999999887776543221110
Q ss_pred CCCCccccccceEEEEecC--CCcEEEE--ccCC---ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC
Q psy14257 403 CRPEDNLWIGKNLYWVESN--LDQIEVA--KLSG---QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM 475 (841)
Q Consensus 403 ~~~~avdw~~~~LY~tD~~--~~~I~v~--~~~G---~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l 475 (841)
.++...++.|.|+-.. ...|++. ++++ ...+.+...........++.|++.+|+++.......+|+++++
T Consensus 236 ---p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 236 ---PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ---eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 0222334677776532 3355553 4332 2223333322223345689998777777653323578999988
Q ss_pred CCCC--cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE--ecC
Q psy14257 476 SGEH--RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FEN 549 (841)
Q Consensus 476 dG~~--~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~--~~~ 549 (841)
++.. .+.+.. ........++.+++++|+++... ...|+.+++++...+.+..... .....++ .+.
T Consensus 313 ~~~g~~~~~lt~------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~---~~~~p~wSpDG~ 383 (428)
T PRK01029 313 DPEGQSPRLLTK------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE---NKESPSWAIDSL 383 (428)
T ss_pred cccccceEEecc------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC---CccceEECCCCC
Confidence 7532 333322 11233456788888888887543 3479999998887766654321 1233444 445
Q ss_pred eEEEEeC--CCCeEEEEeccCCcceE
Q psy14257 550 HVYWTDW--RTNSVIRANKWNGSDVT 573 (841)
Q Consensus 550 ~lY~td~--~~~~i~~~~~~~g~~~~ 573 (841)
+||++.. ....|+.++..+++...
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEE
Confidence 6776543 23567777766555433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0033 Score=71.49 Aligned_cols=230 Identities=12% Similarity=0.053 Sum_probs=134.2
Q ss_pred ccccccccccccEEEEeccccceeeecccccCCcceeEEEecC--CCeEEEEEecCCcccceEEEEeCCCCCccceEEee
Q psy14257 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVI--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDW 306 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~ 306 (841)
.+|+.++.++.+...+...........|.+..+. |+++... ...|+..++.+|. ... +...-.....+++.+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~--la~~s~~~~~~~I~~~dl~~g~---~~~-l~~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTK--LAYVSFESKKPVVYVHDLATGR---RRV-VANFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCE--EEEEEccCCCcEEEEEECCCCC---EEE-eecCCCCccceEECC
Confidence 3566777766665555544444566778775444 6665433 3468888887664 222 221111233566776
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccE
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERT 384 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~ 384 (841)
.++.+++.-... ....|++.+.++...+.+... -......++.+++++|+++.. ....|+.++++++..+
T Consensus 250 DG~~la~~~~~~-------g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 250 DGRTLAVALSRD-------GNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred CCCEEEEEEccC-------CCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence 665555432211 224788888887766655332 223345678888888887643 3457888888876655
Q ss_pred EEEeeeeecCCCccccCCCCCCccccccceEEEEecCC--CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEe
Q psy14257 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL--DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTD 462 (841)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~--~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td 462 (841)
.+....... ...++...++.|+++.... ..|.+.++++...+.+.... .....++.|++.+|+++.
T Consensus 322 ~lt~~g~~~----------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 322 RVTFTGSYN----------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYAT 389 (427)
T ss_pred EEecCCCCc----------CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEE
Confidence 443111000 0012333456777765433 36888898776555544332 235668899888888876
Q ss_pred cCCCCCeEEEecCCCCCcEEEE
Q psy14257 463 WDSKAPRIERCSMSGEHRSVIV 484 (841)
Q Consensus 463 ~~~~~~~I~r~~ldG~~~~~i~ 484 (841)
.......|+.++++|..+..+.
T Consensus 390 ~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 390 QQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ecCCCEEEEEEECCCCceEEee
Confidence 4433567899999987766554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0061 Score=69.34 Aligned_cols=207 Identities=14% Similarity=0.044 Sum_probs=121.6
Q ss_pred ceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEe
Q psy14257 301 GLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRV 378 (841)
Q Consensus 301 giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~l 378 (841)
.+++.|.++.+++. ++.. ..+.|+..++++..++.+.... +.....++.+++++|+++-. ....|+.+++
T Consensus 200 ~p~wSPDG~~la~~-s~~~------~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 200 SPAWSPDGTKLAYV-SFES------KKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cceEcCCCCEEEEE-EccC------CCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 45666655444432 2211 2347999998866555543222 23456889999999987633 3456889998
Q ss_pred cCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCC
Q psy14257 379 DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG 456 (841)
Q Consensus 379 dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g 456 (841)
+++..+.+..... +. ...+....++.|+++.. +...|++.++++...+.+...+ ......++.|++.
T Consensus 272 ~~~~~~~lt~~~~--------~~--~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~ 340 (427)
T PRK02889 272 DGSGLRRLTQSSG--------ID--TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGK 340 (427)
T ss_pred CCCCcEECCCCCC--------CC--cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCC
Confidence 8876655422110 00 00112223466776543 2446777777765444333222 2233568899888
Q ss_pred eEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCCeeEEEEc
Q psy14257 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 457 ~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~ 533 (841)
+|+++........|+..++++...+.+.. . ......++.++++.||++-.. ...++.++++|...+.+..
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-----~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~ 412 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTALTD-----T--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSV 412 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEccC-----C--CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeec
Confidence 88887643223579999988766555433 1 122456788888888886533 3468888898887766643
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0054 Score=69.78 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=138.1
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
..+|+.++.||.+.+.+... -..-...++.+++++|.++.. ....|+..+++++..+.+........
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~-~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~---------- 246 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG---------- 246 (429)
T ss_pred ceeEEEEcCCCCCCEEeecC-CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC----------
Confidence 44799999999988777543 234457899999988887643 34578999998877666543211100
Q ss_pred CCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 405 PEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
..++...+..|+++... ...|++.++++...+.+... -......++.|+..+|+++.......+|+++++++...+.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~ 325 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR 325 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE
Confidence 01233345778887443 34688899887655554432 2345677899987777555422235799999998876655
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCC-
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN- 559 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~- 559 (841)
+.. ........++.++++.|+++.... ..|+.+++++...+.+.... ....| .++-++..|+++....+
T Consensus 326 lt~------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~~~p-~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 326 ITW------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-LDETP-SIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred eec------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-CCCCc-eECCCCCEEEEEEcCCCc
Confidence 533 222334577787788887765433 46888898877666554321 11122 23334556766654332
Q ss_pred e-EEEEeccCCcceEEE
Q psy14257 560 S-VIRANKWNGSDVTLI 575 (841)
Q Consensus 560 ~-i~~~~~~~g~~~~~i 575 (841)
. +..++. +|.....+
T Consensus 398 ~~l~~~~~-~G~~~~~l 413 (429)
T PRK03629 398 SVLNLVST-DGRFKARL 413 (429)
T ss_pred eEEEEEEC-CCCCeEEC
Confidence 2 334443 45544433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.011 Score=67.13 Aligned_cols=230 Identities=8% Similarity=0.020 Sum_probs=134.5
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCce
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 353 (841)
+|+.++.+|+. .+.+.. +-.....+++.|.++.+.++ + +. .....|+..++++...+.+.... .....
T Consensus 180 ~l~~~d~dg~~---~~~lt~-~~~~~~~p~wSPDG~~la~~-s-~~-----~g~~~i~i~dl~~G~~~~l~~~~-~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGYN---QFVVHR-SPQPLMSPAWSPDGSKLAYV-T-FE-----SGRSALVIQTLANGAVRQVASFP-RHNGA 247 (429)
T ss_pred eEEEEcCCCCC---CEEeec-CCCceeeeEEcCCCCEEEEE-E-ec-----CCCcEEEEEECCCCCeEEccCCC-CCcCC
Confidence 57777776542 233322 22234456777766544332 2 11 12347888888776555554221 12345
Q ss_pred EEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEec--CCCcEEEEc
Q psy14257 354 LVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAK 429 (841)
Q Consensus 354 lavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~ 429 (841)
+++.+++++|+++... ...|+.++++++..+.+..... ... ..+....++.|+++-. +...|++.+
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-----~~~-----~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-----NNT-----EPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-----CcC-----ceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 7899999999997543 3469999998876665532210 000 0012223455655432 234788888
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
+++...+.+... .......++.|++.+|+++........|+..++++...+.+.. .. .-...++.+++..|+
T Consensus 318 ~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-----~~--~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 318 INGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-----TF--LDETPSIAPNGTMVI 389 (429)
T ss_pred CCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-----CC--CCCCceECCCCCEEE
Confidence 887655544332 2334567889988888877643234678999988766555432 11 112345777788888
Q ss_pred EEeCCC--CeEEEEEcCCCeeEEEEc
Q psy14257 510 WIDAKS--DSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 510 w~d~~~--~~I~~~~~dG~~~~~i~~ 533 (841)
++.... ..++.++++|...+.+..
T Consensus 390 ~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred EEEcCCCceEEEEEECCCCCeEECcc
Confidence 876543 358888999988777654
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=62.16 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=58.1
Q ss_pred ceeEEeecCCcEEEEecCC---------------CCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEE
Q psy14257 741 SGLAIDWIAQNMFIAVSSP---------------TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFW 805 (841)
Q Consensus 741 ~glAvD~~~~~LYw~~~~~---------------~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw 805 (841)
.+|+|+..++.+|+|++.. .++++-+.++.....++++++ |.-|.|||+.+...+|++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-------L~fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-------LYFPNGVALSPDESFVLV 73 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-------ESSEEEEEE-TTSSEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-------CCccCeEEEcCCCCEEEE
Confidence 4789998889999997532 234677888888888899998 999999999999999999
Q ss_pred EecCCCcceEEEEecCCC
Q psy14257 806 SNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 806 ~d~~~~~~~I~~~~~dG~ 823 (841)
++.+.. ||.|.++.|.
T Consensus 74 ~Et~~~--Ri~rywl~Gp 89 (89)
T PF03088_consen 74 AETGRY--RILRYWLKGP 89 (89)
T ss_dssp EEGGGT--EEEEEESSST
T ss_pred EeccCc--eEEEEEEeCC
Confidence 999884 9999999984
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0049 Score=70.63 Aligned_cols=208 Identities=14% Similarity=0.067 Sum_probs=126.9
Q ss_pred ccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCC--Ccc-ccCCCC--------CCccccccceEEEEecCCCcEE
Q psy14257 358 YNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD--SRV-GIPNCR--------PEDNLWIGKNLYWVESNLDQIE 426 (841)
Q Consensus 358 ~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~--~~~-~i~~~~--------~~avdw~~~~LY~tD~~~~~I~ 426 (841)
|+++.||+-|..+.+|-|++++--....+..+...... ... -.|+.. .+-+...++.|+.++...+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 56899999999999999999987665555443211110 000 001000 0112223346777766677788
Q ss_pred EEccCCceE-EEEecCCCCCceeEEEcCCCCeEEEEecCCC------------CCeEEEecC--------CCC------C
Q psy14257 427 VAKLSGQFR-RTLIAGDMESPRAIALDPRFGLLFWTDWDSK------------APRIERCSM--------SGE------H 479 (841)
Q Consensus 427 v~~~~G~~~-~~l~~~~l~~P~giavd~~~g~Ly~td~~~~------------~~~I~r~~l--------dG~------~ 479 (841)
+++.+.... ..+..+ .+|+.+++++.++++|+|..+.+ ...+..++. ||. +
T Consensus 219 vID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn 296 (635)
T PRK02888 219 AVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGS 296 (635)
T ss_pred EEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCC
Confidence 887764322 223323 38999999999999999964321 111112211 221 1
Q ss_pred cEEEEEecc----c------CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe---------eEEEEcCCCCCCc
Q psy14257 480 RSVIVRVDL----L------TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD---------HHVVLSNHDSLTH 540 (841)
Q Consensus 480 ~~~i~~~~~----~------~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~---------~~~i~~~~~~l~~ 540 (841)
+..+++... . ...-+.|.|++++++++++|++....+.+..+++.... +.+++...+.-..
T Consensus 297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 297 KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 112222110 0 02346799999999999999999999999999987632 2334433333346
Q ss_pred ceEEEEec-CeEEEEeCCCCeEEEEecc
Q psy14257 541 PFAIALFE-NHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 541 P~gla~~~-~~lY~td~~~~~i~~~~~~ 567 (841)
|...++.+ |+.|.|-.-...|.++|..
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehH
Confidence 88888865 6899998888888888743
|
|
| >KOG4260|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.5e-05 Score=75.82 Aligned_cols=100 Identities=22% Similarity=0.464 Sum_probs=66.5
Q ss_pred ccCCCCCeEecC-CCCCCCCCCCCCCCCCcccccccccC------------CCCCCCcc---cCCCCcEE-ecCCCceec
Q psy14257 101 DCQDVLRTCIPK-ALVCDGEPACFNGEDEMFCDEKQCLR------------SDCHHDCY---NTPEGFMC-VCPRDMYLQ 163 (841)
Q Consensus 101 ~C~~~~~~Ci~~-~~~Cdg~~~C~~g~de~~C~eC~~~~------------~~C~~~C~---~~~g~~~C-~C~~Gy~l~ 163 (841)
.|... +.|--. +..=+|..+|..||.+..|++|.... ..|+..|. ..+++-.| .|..|+.|.
T Consensus 151 ~C~Gn-G~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~ld 229 (350)
T KOG4260|consen 151 PCFGN-GSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKGCSKCKKGWKLD 229 (350)
T ss_pred CcCCC-CcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCCCCChhhhcccceec
Confidence 34433 555433 33344555999999888886663211 12232333 12344455 599999984
Q ss_pred CCCCccccccccC-CCCCc--cCceeecCCCCceEEeecCCeeec
Q psy14257 164 PDLITCSYLHPCE-AWGTC--SQDCEPSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 164 ~d~~~C~~~~eC~-~~~~C--s~~C~~~~~~g~~~C~C~~G~~l~ 205 (841)
...|.|++||+ .+.+| .|+|.|+ .|+|.|.+.+||...
T Consensus 230 --e~gCvDvnEC~~ep~~c~~~qfCvNt--eGSf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 230 --EEGCVDVNECQNEPAPCKAHQFCVNT--EGSFKCEDKEGYKKG 270 (350)
T ss_pred --ccccccHHHHhcCCCCCChhheeecC--CCceEecccccccCC
Confidence 66799999998 45567 5699999 999999999999864
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0054 Score=69.95 Aligned_cols=227 Identities=12% Similarity=0.083 Sum_probs=132.6
Q ss_pred ccccccccccEEEEeccccceeeecccccCCcceeEEEecC--CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeec
Q psy14257 231 LRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVI--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIG 308 (841)
Q Consensus 231 I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~ 308 (841)
|+.++.++.+...+...........|....+. |+++... ...|++.++++|. .+.+.. .-.....+++.+.+
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~--la~~s~~~~~~~l~~~~l~~g~---~~~l~~-~~g~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKR--IAYVSFEQKRPRIFVQNLDTGR---REQITN-FEGLNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCE--EEEEEcCCCCCEEEEEECCCCC---EEEccC-CCCCcCCeEECCCC
Confidence 55566666665555554444566778776444 7665433 3478888887664 222211 11122245666655
Q ss_pred CceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEE
Q psy14257 309 KNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVS 386 (841)
Q Consensus 309 ~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~ 386 (841)
+.+++.-.. .....|++.++++...+.+... -......++.+++++||++... ...|+.++++++..+.+
T Consensus 255 ~~la~~~~~-------~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 255 SKLAFVLSK-------DGNPEIYVMDLASRQLSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CEEEEEEcc-------CCCceEEEEECCCCCeEEcccC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 555442211 1124799999887766655432 2234456788888888776543 45799999887765554
Q ss_pred EeeeeecCCCccccCCCCCCccccccceEEEEecCC--CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC
Q psy14257 387 FNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL--DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 387 ~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~--~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~ 464 (841)
...... . ...++...++.|+++.... ..|.+.++++...+.+.... ......+.|++..|+++...
T Consensus 327 t~~~~~--~--------~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 327 TFVGNY--N--------ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred ecCCCC--c--------cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEec
Confidence 321100 0 0012333457888876433 35888888876655544322 22244788988899888754
Q ss_pred CCCCeEEEecCCCCCcEEE
Q psy14257 465 SKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 465 ~~~~~I~r~~ldG~~~~~i 483 (841)
.....|+..+++|...+.+
T Consensus 395 ~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 395 QGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CCceEEEEEECCCCceEEC
Confidence 3456799999998766544
|
|
| >KOG1219|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=5e-05 Score=93.68 Aligned_cols=59 Identities=34% Similarity=0.697 Sum_probs=50.4
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc-----ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC-----DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C-----~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
+|..+ +.|++. .+.| .|+.||.+.+| +||+-. .|. ..|.|.+|+|.|.|-+||. +++|.
T Consensus 3910 PC~~G-gtCip~~n~f~C----nC~~gyTG~~Ce~~Gi~eCs~n--~C~~gg~C~n~~gsf~CncT~g~~----gr~c~ 3977 (4289)
T KOG1219|consen 3910 PCLTG-GTCIPFYNGFLC----NCPNGYTGKRCEARGISECSKN--VCGTGGQCINIPGSFHCNCTPGIL----GRTCC 3977 (4289)
T ss_pred CCCCC-CEEEecCCCeeE----eCCCCccCceeecccccccccc--cccCCceeeccCCceEeccChhHh----cccCc
Confidence 69998 999997 7899 99999999999 578743 674 4899999999999999997 56663
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.011 Score=64.87 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=83.6
Q ss_pred cCCCCCceEEEEecCCCEEEEEECCCCeE------EEEEcccCceeeeeeeeeeeecccccc-------cccccCceEEE
Q psy14257 665 IPQVFSPNNLNFDAANKKIYWTDQEYNEV------KRSSIVGGQIQLVVDAVFEFYLTPLSK-------RSSIVGGQIQL 731 (841)
Q Consensus 665 ~~~~~~~~~v~~d~~~~~iyw~d~~~~~I------~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 731 (841)
.-.+.|+.+++++|.++.||.++.+...+ .++ ..| ++|-=|.+. +....+.....
T Consensus 235 s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G-----------~nYGWP~~~~G~~~~g~~~~~~~~~~~ 302 (399)
T COG2133 235 SYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPG-----------KNYGWPYAYFGQNYDGRAIPDGTVVAG 302 (399)
T ss_pred EeccCCccceeecCCCCcEEEEecCCCcccCccccccc-ccC-----------CccCCceeccCcccCccccCCCccccc
Confidence 34678999999999999999999766433 222 122 234333322 11111111111
Q ss_pred Eee-----CCCCCcceeEEeecC------CcEEEEecCCCCCeEEEEecCCcceEEE---EcCCCCCCCcCCCceEEEEe
Q psy14257 732 VVD-----AGISHPSGLAIDWIA------QNMFIAVSSPTQSKIVVCNLEGEYQTTI---LSNESNDTSTLSKISSIAVW 797 (841)
Q Consensus 732 i~~-----~~~~~p~glAvD~~~------~~LYw~~~~~~~~~I~v~~l~g~~~~~~---~~~~~~~~~~l~~p~~iavd 797 (841)
.+. ..--.|.||||---. +.||++. .....+.+.+++|..+.++ +.. +. ..+|+++++.
T Consensus 303 ~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~--hgsw~~~~~~~~g~~~~~~~~fl~~---d~--~gR~~dV~v~ 375 (399)
T COG2133 303 AIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGA--HGSWPVLRLRPDGNYKVVLTGFLSG---DL--GGRPRDVAVA 375 (399)
T ss_pred ccCCceeeccccccceeEEecCCcCccccCcEEEEe--ecceeEEEeccCCCcceEEEEEEec---CC--CCcccceEEC
Confidence 111 111347899997321 5899994 4555677788999854333 331 00 2699999999
Q ss_pred CCCCeEEEEecCCCcceEEEEecCC
Q psy14257 798 PVKGKMFWSNVTKQVVTIEMAFMDG 822 (841)
Q Consensus 798 ~~~g~lyw~d~~~~~~~I~~~~~dG 822 (841)
|. |.||.++...+ ++|.|...++
T Consensus 376 ~D-Gallv~~D~~~-g~i~Rv~~~~ 398 (399)
T COG2133 376 PD-GALLVLTDQGD-GRILRVSYAG 398 (399)
T ss_pred CC-CeEEEeecCCC-CeEEEecCCC
Confidence 97 77888777654 5899998776
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.12 Score=56.12 Aligned_cols=111 Identities=11% Similarity=0.067 Sum_probs=75.0
Q ss_pred CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEE
Q psy14257 666 PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAI 745 (841)
Q Consensus 666 ~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAv 745 (841)
.++.++.++..++..+++-+++ ....|..++++..+ .+.|-.+..+-..++++
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn--------------------------v~~idkS~~~lItdf~~ 451 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN--------------------------VRLIDKSEYGLITDFDW 451 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC--------------------------eeEecccccceeEEEEE
Confidence 4678899999999989898887 57899999998877 33333334444566666
Q ss_pred eecCCcEEEEe-cCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCC
Q psy14257 746 DWIAQNMFIAV-SSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 746 D~~~~~LYw~~-~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~ 810 (841)
.+.+|.+=.+= ...-.+.|.+.+++|...-.+... -..-.+=|.||.+.+||+.....
T Consensus 452 ~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-------ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 452 HPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-------TAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred cCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-------cccccCcccCCCCcEEEEEeccc
Confidence 66666554330 011236799999998644333332 23444558999999999987643
|
|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.3e-05 Score=57.03 Aligned_cols=38 Identities=34% Similarity=0.624 Sum_probs=31.3
Q ss_pred ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCcc
Q psy14257 132 DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 132 ~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
|||......|. +.|.|+.|+|.|.|++||.+..++.+|
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 57776667786 599999999999999999976666655
|
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A .... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.019 Score=65.13 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=60.8
Q ss_pred cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 424 QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 424 ~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
.|++.++++...+.+.. .......++++|...+|+++.......+|+.+++++...+.+.. . ......++.+
T Consensus 303 ~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-----~--~~~~~p~~sp 374 (417)
T TIGR02800 303 QIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-----T--GLDESPSFAP 374 (417)
T ss_pred eEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-----C--CCCCCceECC
Confidence 45555555443333322 22344567889988899998765334589999998755544432 1 1123446777
Q ss_pred cCCEEEEEeCCC--CeEEEEEcCCCeeEEE
Q psy14257 504 QLTRIYWIDAKS--DSIHTVTYDGKDHHVV 531 (841)
Q Consensus 504 ~~~~LYw~d~~~--~~I~~~~~dG~~~~~i 531 (841)
.++.|+++.... ..++.++.+|...+.+
T Consensus 375 dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 375 NGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 788888876544 3577777788765544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.034 Score=63.14 Aligned_cols=234 Identities=9% Similarity=0.068 Sum_probs=130.8
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCce-eEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCc
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNL-YMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPS 352 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~-y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~ 352 (841)
.|+.++.+|+. ...+.. +-..-...+..|.++.+ |+|.+.-. ..+.|+..+++|...+.+... -+...
T Consensus 166 ~l~~~d~dG~~---~~~lt~-~~~~~~sP~wSPDG~~~~~~y~S~~~------g~~~I~~~~l~~g~~~~lt~~-~g~~~ 234 (428)
T PRK01029 166 ELWSVDYDGQN---LRPLTQ-EHSLSITPTWMHIGSGFPYLYVSYKL------GVPKIFLGSLENPAGKKILAL-QGNQL 234 (428)
T ss_pred eEEEEcCCCCC---ceEccc-CCCCcccceEccCCCceEEEEEEccC------CCceEEEEECCCCCceEeecC-CCCcc
Confidence 67777777653 222221 11111234566666554 34444422 235899999998877766542 12234
Q ss_pred eEEEEccCCEEEEEeCC--CCeEEEE--EecC---CccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CC
Q psy14257 353 SLVIDYNQDILYWCDSH--LNTVESV--RVDG---SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LD 423 (841)
Q Consensus 353 glavD~~~~~lYwaD~~--~~~I~~~--~ldG---~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~ 423 (841)
..++.+++++|.++-.. ...|+.. ++++ +..+.+.... . ++. ...++...+..|+++... ..
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-~------~~~--~~p~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA-F------GTQ--GNPSFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC-C------CCc--CCeEECCCCCEEEEEECCCCCc
Confidence 57888999888887542 3345553 4432 2223332110 0 000 001223344667766432 34
Q ss_pred cEEEEccCC--ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEE
Q psy14257 424 QIEVAKLSG--QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTL 501 (841)
Q Consensus 424 ~I~v~~~~G--~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glal 501 (841)
.|+++++++ ...+.+ ..........+..|++.+|+++.......+|+..++++...+.+.. . .......++
T Consensus 306 ~ly~~~~~~~g~~~~~l-t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-----~-~~~~~~p~w 378 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLL-TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-----S-PENKESPSW 378 (428)
T ss_pred eEEEEECcccccceEEe-ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-----C-CCCccceEE
Confidence 688877753 223322 2222334567889998888887643235689999998877666643 1 123455777
Q ss_pred eccCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcC
Q psy14257 502 DYQLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 502 D~~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~ 534 (841)
.++++.||++.. +...|+.+++++...+.+...
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 777788887643 345788999988776666543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0092 Score=61.43 Aligned_cols=208 Identities=12% Similarity=0.079 Sum_probs=133.3
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
...+|+.++..+.||.. ++ ....|......|...+++....+..|.+|++= .++..-++|....+++.+.
T Consensus 87 nvS~LTynp~~rtLFav-~n--------~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 87 NVSSLTYNPDTRTLFAV-TN--------KPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccceeeCCCcceEEEe-cC--------CCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEE
Confidence 46778999887666642 21 23489999999999999999999999999985 3455556788889999888
Q ss_pred ecCCccEEEEee-----eeecCCCccccCCCCCCccccccceEEEEecCC-CcEEEEccCCceEEEEecC----C----C
Q psy14257 378 VDGSERTVSFNL-----EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-DQIEVAKLSGQFRRTLIAG----D----M 443 (841)
Q Consensus 378 ldG~~~~~~~~~-----~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-~~I~v~~~~G~~~~~l~~~----~----l 443 (841)
++-......... +..... ..| -..+|.|...+.||++-..+ -.|+..+..-+....-+.. . +
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~-N~G---fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKK-NKG---FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EcCCccEEeccceEEeccccCCC-CcC---ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 876543332221 111110 111 12346677778898886442 2444444322111111110 0 3
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec-c--cCCCCCCceeEEEeccCCEEEEEeCCCCeEEE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD-L--LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~-~--~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~ 520 (841)
..-.|+.+|+.++.|++-... ...+..++++|..+..+.-.. . ....+..|.|+|+| ..+.||++-. -+..++
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~E--Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvSE-Pnlfy~ 308 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDE--SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVSE-PNLFYR 308 (316)
T ss_pred eccccceecCCCCcEEEEecC--CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEec-CCccee
Confidence 446789999999999887754 688999999998655443211 0 12467889999999 6789998754 344555
Q ss_pred EEc
Q psy14257 521 VTY 523 (841)
Q Consensus 521 ~~~ 523 (841)
+..
T Consensus 309 F~~ 311 (316)
T COG3204 309 FTP 311 (316)
T ss_pred ccc
Confidence 543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.11 Score=53.78 Aligned_cols=212 Identities=11% Similarity=0.044 Sum_probs=113.7
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
++.|..++.............-.....+.+.+. +.++++....+.|...++........+.. .... ..
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~-------i~ 139 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRG----HTDW-------VN 139 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEecc----CCCc-------EE
Confidence 567888887653222222222335667888766 45666666678888888873322222110 0000 01
Q ss_pred cccccc-ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEE
Q psy14257 407 DNLWIG-KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 407 avdw~~-~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~ 485 (841)
.+.|.. +.++++....+.|.+.++........+.........+++++....|+.+.. .+.|...++..........
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCceecchh
Confidence 122222 344444444678888888643322223233346789999988667766653 4677777775422222221
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeE
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSV 561 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i 561 (841)
..-..+..+++++. +.++++....+.|..+++........+... -.....+++.. +.++++-...+.|
T Consensus 217 -----~~~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 217 -----GHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred -----hcCCceEEEEEcCC-CcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeE
Confidence 12235678888865 666666656788999988743332222221 22356677654 3444444344443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.016 Score=60.10 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=129.1
Q ss_pred EEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-----CCcccccccc-------CcCCCceEEEEc
Q psy14257 291 VVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-----GENRSPLVTK-------NIQWPSSLVIDY 358 (841)
Q Consensus 291 ~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-----G~~~~~l~~~-------~~~~P~glavD~ 358 (841)
.+...|..|.|||+.|.+ .++++|. .++....++.+ |.....++.- .-..|.|+++..
T Consensus 17 ~tDp~L~N~WGia~~p~~---~~WVadn-------gT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRPGG---PFWVANT-------GTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG 86 (336)
T ss_pred ccCccccccceeEecCCC---CEEEecC-------CcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC
Confidence 345678899999998744 2223332 33455555555 3332212211 235799999985
Q ss_pred cCCE-----------EEEEeCCCCeEEEEEecCCcc----E-EEEeeee-ecCCCccccCCCCCCccccccceEEEEecC
Q psy14257 359 NQDI-----------LYWCDSHLNTVESVRVDGSER----T-VSFNLEV-LGSDSRVGIPNCRPEDNLWIGKNLYWVESN 421 (841)
Q Consensus 359 ~~~~-----------lYwaD~~~~~I~~~~ldG~~~----~-~~~~~~~-~~~~~~~~i~~~~~~avdw~~~~LY~tD~~ 421 (841)
.... .|+...+.++|......-... . ++++-.. -.--..+++.. ---+..||-+|-.
T Consensus 87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~------~~~~~~LYaadF~ 160 (336)
T TIGR03118 87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGP------TGGGDYLYAANFR 160 (336)
T ss_pred CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEee------cCCCceEEEeccC
Confidence 5332 233444455565544322111 1 1111000 00000111110 0114889999999
Q ss_pred CCcEEEEccCCceEEEEecCCC--------CCceeEEEcCCCCeEEEEecC-----------CCCCeEEEecCCCCCcEE
Q psy14257 422 LDQIEVAKLSGQFRRTLIAGDM--------ESPRAIALDPRFGLLFWTDWD-----------SKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~~~l--------~~P~giavd~~~g~Ly~td~~-----------~~~~~I~r~~ldG~~~~~ 482 (841)
+++|.|++ +++.++.+...+ .-|.+|.- ..+.||+|=.. ...+.|-.++++|...+.
T Consensus 161 ~g~IDVFd--~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r 236 (336)
T TIGR03118 161 QGRIDVFK--GSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRR 236 (336)
T ss_pred CCceEEec--CccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEE
Confidence 99999985 444433332222 34677766 36899999321 124579999999998887
Q ss_pred EEEecccCCCCCCceeEEEecc-----CCEEEEEeCCCCeEEEEEcC-CCeeEEEEc
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQ-----LTRIYWIDAKSDSIHTVTYD-GKDHHVVLS 533 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~-----~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~ 533 (841)
+.+. ..|..|-||++-+. .+.|.+-+.+.++|..+|+. |..+-.+..
T Consensus 237 ~as~----g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 237 VASS----GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred eccC----CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 7663 67899999999653 58999999999999999986 666655543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.011 Score=61.74 Aligned_cols=215 Identities=11% Similarity=0.053 Sum_probs=123.6
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE----e------cCCccEEEEeeeeecCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR----V------DGSERTVSFNLEVLGSDS 396 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~----l------dG~~~~~~~~~~~~~~~~ 396 (841)
.||+.....+-..+..+....+.+|.||++. .++||++-. ..|+++. + .+..-+.... .....-.
T Consensus 27 agkL~~ig~~~~g~l~~~~r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvP-r~~~~TG 101 (335)
T TIGR03032 27 AGKLFFIGLQPNGELDVFERTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVP-RASYVTG 101 (335)
T ss_pred cceEEEEEeCCCCcEEEEeeccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCeEEee-eeeeecc
Confidence 3455555443222355556688999999996 578998864 2455541 0 1110000000 0000000
Q ss_pred ccccCCCCCCccccccceEEEEecCCCcEEEEccCCceE--------EEEecCCCCCceeEEEcCCCCeEEEEecCC-CC
Q psy14257 397 RVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFR--------RTLIAGDMESPRAIALDPRFGLLFWTDWDS-KA 467 (841)
Q Consensus 397 ~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~--------~~l~~~~l~~P~giavd~~~g~Ly~td~~~-~~ 467 (841)
.+. .-+++|.++.++++.+...-+...+..-++. ..+..++--+-+|||+. ++.--|+|..+. ..
T Consensus 102 did-----iHdia~~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~ 175 (335)
T TIGR03032 102 DID-----AHDLALGAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDV 175 (335)
T ss_pred Ccc-----hhheeecCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCC
Confidence 011 1245666788888887766666555554432 23333444577899997 345667776442 12
Q ss_pred CeEEEecC-CCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE
Q psy14257 468 PRIERCSM-SGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546 (841)
Q Consensus 468 ~~I~r~~l-dG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~ 546 (841)
+.=+|-.. +|.-...+...+....++..|.+.-+- +++||+.|.+.+.|.+++++....+.+..-. ..|.||++
T Consensus 176 ~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vp---G~~rGL~f 250 (335)
T TIGR03032 176 ADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP---GFTRGLAF 250 (335)
T ss_pred cccccccccCCeEEEEeCCCCEEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECC---CCCcccce
Confidence 34444443 222221111111111578888888774 7999999999999999999844444555443 47899999
Q ss_pred ecCeEEEEeCC
Q psy14257 547 FENHVYWTDWR 557 (841)
Q Consensus 547 ~~~~lY~td~~ 557 (841)
.++++|++-..
T Consensus 251 ~G~llvVgmSk 261 (335)
T TIGR03032 251 AGDFAFVGLSK 261 (335)
T ss_pred eCCEEEEEecc
Confidence 98899887554
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.5e-05 Score=52.18 Aligned_cols=32 Identities=50% Similarity=1.174 Sum_probs=28.7
Q ss_pred CCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCC
Q psy14257 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128 (841)
Q Consensus 95 C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de 128 (841)
|...+|.|.+ +.||+..++|||..+|.+|+||
T Consensus 2 C~~~~f~C~~--~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDN--GRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCC--CCEECchhhCCCcCcCcCCCCC
Confidence 5566899987 7899999999999999999987
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. |
| >PF12999 PRKCSH-like: Glucosidase II beta subunit-like | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.4e-05 Score=71.81 Aligned_cols=70 Identities=36% Similarity=0.645 Sum_probs=55.8
Q ss_pred CCCCcccCCCCeE-ecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccCCCCC---e
Q psy14257 33 DESHFTCNETLRC-IPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLR---T 108 (841)
Q Consensus 33 ~~~~~~C~~~~~C-i~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~~~~~C~~~~~---~ 108 (841)
..+.|+|.+...= |+.+.+.|+.-||. |||||-+ ...|..+.|.|.|. + .
T Consensus 34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~--DGSDEPG-----------------------TsAC~~~~FyC~N~-g~~p~ 87 (176)
T PF12999_consen 34 ENGKFTCLDGSKIVIPFSQINDDYCDCP--DGSDEPG-----------------------TSACSNGKFYCENK-GHIPR 87 (176)
T ss_pred CCCceEecCCCCceecHHHccCcceeCC--CCCCccc-----------------------cccCcCceEeeccC-CCCCc
Confidence 4567999856555 99999999999999 8888833 13466678899885 4 5
Q ss_pred EecCCCCCCCCCC---CCCCCCC
Q psy14257 109 CIPKALVCDGEPA---CFNGEDE 128 (841)
Q Consensus 109 Ci~~~~~Cdg~~~---C~~g~de 128 (841)
-|+.+++=||..| |=||+||
T Consensus 88 ~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 88 YIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred eeehhhhcCCcCcccccCCCCCC
Confidence 6788888888889 9999999
|
|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00021 Score=51.95 Aligned_cols=39 Identities=36% Similarity=0.828 Sum_probs=31.7
Q ss_pred cccccCC-CCCcc--CceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 171 YLHPCEA-WGTCS--QDCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 171 ~~~eC~~-~~~Cs--~~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
|++||.. ...|. +.|+|+ .|+|+|.|++||.+..++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~--~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNT--EGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEE--TTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcC--CCCEEeeCCCCcEECCCCCcC
Confidence 5789974 46785 699999 999999999999977666554
|
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.054 Score=57.85 Aligned_cols=256 Identities=15% Similarity=0.188 Sum_probs=134.6
Q ss_pred ceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccc--cccc-----CcCCCceEEEEccCCEEEEEeC-CCCe
Q psy14257 301 GLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSP--LVTK-----NIQWPSSLVIDYNQDILYWCDS-HLNT 372 (841)
Q Consensus 301 giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~--l~~~-----~~~~P~glavD~~~~~lYwaD~-~~~~ 372 (841)
++++.+.++.+|+.-|.|....-...+--|+.++...-...- .+.. .+..++-+++..+++++|+.+. -...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 366777788888755554311000001135555554332221 1111 2356778899999999999987 5678
Q ss_pred EEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccC--CceEEEE--ecCCCCCce-
Q psy14257 373 VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS--GQFRRTL--IAGDMESPR- 447 (841)
Q Consensus 373 I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~--G~~~~~l--~~~~l~~P~- 447 (841)
|..+++.......-+.+ |.|-- .+=+-++. |.+--+.|++..+.++ |+..+.. +-.....|.
T Consensus 120 VtVVDl~~~kvv~ei~~-----------PGC~~-iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDT-----------PGCWL-IYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp EEEEETTTTEEEEEEEG-----------TSEEE-EEEEETTE-EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred EEEEECCCCceeeeecC-----------CCEEE-EEecCCCc-eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 99999887654332221 11100 00001133 2233345677766665 5543221 111112221
Q ss_pred -eEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC----CCCCCcee---EEEeccCCEEEEEeC------
Q psy14257 448 -AIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT----SRGAWPNG---LTLDYQLTRIYWIDA------ 513 (841)
Q Consensus 448 -giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~----~~~~~P~g---lalD~~~~~LYw~d~------ 513 (841)
.=+.....+.+||... ++.|+.+++.|...+......+.. ..--.|.| +|++...++||+.-.
T Consensus 187 ~~~~~~~~~~~~~F~Sy---~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gs 263 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSY---EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGS 263 (342)
T ss_dssp S--EEETTTTEEEEEBT---TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-
T ss_pred cccceECCCCeEEEEec---CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCC
Confidence 1122334578888776 489999999998766554432110 01223444 889989999998631
Q ss_pred ---CCCeEEEEEcCCCeeEEEEcCCCCCCcce-EEEEec---CeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 514 ---KSDSIHTVTYDGKDHHVVLSNHDSLTHPF-AIALFE---NHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 514 ---~~~~I~~~~~dG~~~~~i~~~~~~l~~P~-gla~~~---~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
....|+.+|+....|-.-+. +.+|. +|++.. -.||-++..++.+...+..+|+.+..+.
T Consensus 264 HKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 264 HKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 12278888887654433222 33443 677743 2677777777778888877777666554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.051 Score=61.90 Aligned_cols=205 Identities=16% Similarity=0.092 Sum_probs=122.8
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
...|+.++.||...+.+... -..-..+++.+++++|+++... ...|+..++.++..+.+........
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~-~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~---------- 251 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRS-SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG---------- 251 (429)
T ss_pred eEEEEEECCCCCCceEeccC-CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC----------
Confidence 35899999999887665432 2344678899999999887543 4579999998776655533211100
Q ss_pred CCccccccceEEEEecCC--CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 405 PEDNLWIGKNLYWVESNL--DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~~--~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
..++...++.|+++-... -.|++.++++...+.+.. ........++.|+..+|+++.......+|++.+.++...+.
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 012223346787764333 357778887765555433 22345678899987777776433236799999988776554
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeC
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~ 556 (841)
+ . ... ...++.++++.|+.+.. ..|..+++.+...+.+.... ....| .++-.+..|+++..
T Consensus 331 l-~-----~~~---~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~-~~~~~-~~sPdG~~i~~~s~ 391 (429)
T PRK01742 331 V-G-----GRG---YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF-LDESP-SISPNGIMIIYSST 391 (429)
T ss_pred e-c-----CCC---CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC-CCCCc-eECCCCCEEEEEEc
Confidence 4 2 111 23556777788877654 56777888765544433221 11111 22334556777654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.52 Score=51.50 Aligned_cols=355 Identities=13% Similarity=0.119 Sum_probs=184.5
Q ss_pred CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC-----cEEEEccCCce
Q psy14257 360 QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD-----QIEVAKLSGQF 434 (841)
Q Consensus 360 ~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~-----~I~v~~~~G~~ 434 (841)
+..||+.+.+.+.+.|+..-|+.-+.+.. +.++ +.-|..||..+- .+++...||..
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~fT~VaG---~~~d----------------g~iiV~TD~~tPF~q~~~lYkv~~dg~~ 166 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRRFTRVAG---WIPD----------------GEIIVSTDFHTPFSQWTELYKVNVDGIK 166 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccccceeec---cCCC----------------CCEEEEeccCCCcccceeeeEEccCCce
Confidence 45799999999999999888754433322 1111 133444554433 34456666654
Q ss_pred EEEEecCCCCCceeEEEcCCCCeEEEE----------ec-CCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 435 RRTLIAGDMESPRAIALDPRFGLLFWT----------DW-DSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 435 ~~~l~~~~l~~P~giavd~~~g~Ly~t----------d~-~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
...+ +|.....|.+ .+|.+++. .. +...++|+...-.|...+.+++.. ..+.+|.=
T Consensus 167 ~e~L---nlGpathiv~--~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~---~~vS~PmI----- 233 (668)
T COG4946 167 TEPL---NLGPATHIVI--KDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLD---GNVSSPMI----- 233 (668)
T ss_pred eeec---cCCceeeEEE--eCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecC---CCcCCceE-----
Confidence 3322 2222233333 23444443 22 113567887777776777777632 46666642
Q ss_pred cCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--------cCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 504 QLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--------ENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 504 ~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--------~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
..+|+|+... +-+.|++++++|.+.+.--.-. --.|.-+.-+ +|.||.=|..+.++.+.+..
T Consensus 234 V~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt--dYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~------ 305 (668)
T COG4946 234 VGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT--DYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIG------ 305 (668)
T ss_pred EcceEEEEecccCccceEEeccCCchhhhcCCch--hccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecC------
Confidence 2688998643 4579999999998765432211 1123322222 35555555555555444321
Q ss_pred EEecccCCCceec-cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEec
Q psy14257 574 LIQRTLTQPFIYV-NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDL 652 (841)
Q Consensus 574 ~i~~~~~~p~~~h-~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l 652 (841)
-|..-. .||.-.+|....+ .+.+ .+...+.+..+.+.+.+..
T Consensus 306 -------lpl~rk~k~~k~~~pskyle---------------------dfa~---------~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 306 -------LPLDRKKKQPKFVNPSKYLE---------------------DFAV---------VNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred -------CccccccccccccCHHHhhh---------------------hhcc---------CCCcEEEEEecCcEEEECC
Confidence 011100 2333334433211 0000 1111232333333333322
Q ss_pred CCCCccccceeecCCCC--CceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEE
Q psy14257 653 EHPYYHTIPTISIPQVF--SPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQ 730 (841)
Q Consensus 653 ~~~~~~~~~~~~~~~~~--~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (841)
... ..+++..-. .-..+..|+. .+-..+.....+-..+.+|+. .+
T Consensus 349 ~~~-----~~iqv~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e--------------------------~k 395 (668)
T COG4946 349 WDG-----YSIQVGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGE--------------------------VK 395 (668)
T ss_pred CCC-----eeEEcCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCce--------------------------EE
Confidence 111 111111111 1112222222 222333223355555555544 33
Q ss_pred EEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCC
Q psy14257 731 LVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 731 ~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~ 810 (841)
. +..+++....|+++..++.+-.++ .+-.|-++.++....+.+-.. .-....+++++|...++=.+-...
T Consensus 396 r-~e~~lg~I~av~vs~dGK~~vvaN---dr~el~vididngnv~~idkS------~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 396 R-IEKDLGNIEAVKVSPDGKKVVVAN---DRFELWVIDIDNGNVRLIDKS------EYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred E-eeCCccceEEEEEcCCCcEEEEEc---CceEEEEEEecCCCeeEeccc------ccceeEEEEEcCCceeEEEecCcc
Confidence 3 445899999999999999899984 366788889887776655542 156888999999877765554421
Q ss_pred C-cceEEEEecCCCceEEEecCCCC
Q psy14257 811 Q-VVTIEMAFMDGTKRETVVSQKKY 834 (841)
Q Consensus 811 ~-~~~I~~~~~dG~~~~~l~~~~~~ 834 (841)
= .-.|.-+.|+|...--+.+..++
T Consensus 466 y~tq~Iklydm~~~Kiy~vTT~ta~ 490 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVTTPTAY 490 (668)
T ss_pred eeeeeEEEEecCCCeEEEecCCccc
Confidence 0 02478888888766665555443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.19 Score=52.03 Aligned_cols=209 Identities=17% Similarity=0.183 Sum_probs=114.0
Q ss_pred CCceeEEEeccCCEEEEEeCCCC--eEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 494 AWPNGLTLDYQLTRIYWIDAKSD--SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~~~~--~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
..-.||.++ .++.||-+....+ +|++++++.........-.. -...-||++.+++||.--|.++..+..++.+-+.
T Consensus 45 aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccceE
Confidence 345789985 4689999986655 89999998654432222211 1235699999999999999999999999865443
Q ss_pred eEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecC-CeEEEE
Q psy14257 572 VTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRP-REIRGV 650 (841)
Q Consensus 572 ~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~-~~i~~~ 650 (841)
...+... .+|+-|..|+. .|+.++. +.|+.+
T Consensus 123 ~~~~~y~----------------------------------------~EGWGLt~dg~--------~Li~SDGS~~L~~~ 154 (264)
T PF05096_consen 123 IGTFPYP----------------------------------------GEGWGLTSDGK--------RLIMSDGSSRLYFL 154 (264)
T ss_dssp EEEEE-S----------------------------------------SS--EEEECSS--------CEEEE-SSSEEEEE
T ss_pred EEEEecC----------------------------------------CcceEEEcCCC--------EEEEECCccceEEE
Confidence 3322110 14555554433 2334433 233333
Q ss_pred ecCCCCccccceeecCC----CCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccC
Q psy14257 651 DLEHPYYHTIPTISIPQ----VFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVG 726 (841)
Q Consensus 651 ~l~~~~~~~~~~~~~~~----~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (841)
+ +........+.+.. +.....|.|- +++||----.+..|.|++...+.+...+| ++++........
T Consensus 155 d--P~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iD------ls~L~~~~~~~~ 224 (264)
T PF05096_consen 155 D--PETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWID------LSGLRPEVGRDK 224 (264)
T ss_dssp ---TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-------HHHHHHHTSTT
T ss_pred C--CcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEE------hhHhhhcccccc
Confidence 2 22211111122211 1234456654 78887666678899999998877433332 222211111000
Q ss_pred ceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec
Q psy14257 727 GQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL 769 (841)
Q Consensus 727 ~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l 769 (841)
.. ....+-.+|||.|+.+++||+| ...=+++..+.|
T Consensus 225 ~~-----~~~~dVLNGIAyd~~~~~l~vT--GK~Wp~lyeV~l 260 (264)
T PF05096_consen 225 SR-----QPDDDVLNGIAYDPETDRLFVT--GKLWPKLYEVKL 260 (264)
T ss_dssp ST-------TTS-EEEEEEETTTTEEEEE--ETT-SEEEEEEE
T ss_pred cc-----cccCCeeEeEeEeCCCCEEEEE--eCCCCceEEEEE
Confidence 00 0124457899999999999999 544456655544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.48 Score=48.96 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=79.0
Q ss_pred EEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCC
Q psy14257 415 LYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGA 494 (841)
Q Consensus 415 LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~ 494 (841)
+.++-...+.|.+.+++.................+.+.+...+|+.+.. .+.|...+++......... ..-.
T Consensus 23 ~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~~~~~~~~~~~~-----~~~~ 94 (289)
T cd00200 23 LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLWDLETGECVRTLT-----GHTS 94 (289)
T ss_pred EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEEEcCcccceEEEe-----ccCC
Confidence 3333334677888777654322222222233348888887656666553 4677777776532222222 1223
Q ss_pred CceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeEEEEeccCCc
Q psy14257 495 WPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 495 ~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.+..+.+.+. ++++++....+.|...++............ ......+++.. +.++++-...+.|...+..+++
T Consensus 95 ~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 95 YVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred cEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccC--CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 5677888765 566666666788999988733332222221 22356677644 4444444345666666554333
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.097 Score=59.63 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=126.1
Q ss_pred ccccccccccccEEEEeccccceeeecccccCCcceeEEEecC--CCeEEEEEecCCcccceEEEEeCCCCCccceEEee
Q psy14257 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVI--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDW 306 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~ 306 (841)
.+|+..+.++.+...+.........+.|.++... |.++... ..+|+..++.++. .+.+ ...-..-..+++.|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~--la~~s~~~~~~~i~i~dl~tg~---~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSK--LAYVSFENKKSQLVVHDLRSGA---RKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCE--EEEEEecCCCcEEEEEeCCCCc---eEEE-ecCCCccCceeECC
Confidence 3555566666665555444344667788776544 6665332 3468888876653 2222 21111223466666
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccE
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERT 384 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~ 384 (841)
.++.+++.-.. .....|+..++++...+.+.. .-......++.+++++|+++-. ..-.|+.++.+|...+
T Consensus 258 DG~~La~~~~~-------~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 258 DGSRLAFASSK-------DGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCEEEEEEec-------CCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 55444442111 111258888887766555533 2233557889999888887643 3457888888777655
Q ss_pred EEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC
Q psy14257 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~ 464 (841)
.+ .... . ..++...++.|+++.. ..|.+.++.+...+.+.. .. .-..++++|+..+|+++...
T Consensus 330 ~l-~~~~--~----------~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~-~~-~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 330 LV-GGRG--Y----------SAQISADGKTLVMING--DNVVKQDLTSGSTEVLSS-TF-LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred Ee-cCCC--C----------CccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecC-CC-CCCCceECCCCCEEEEEEcC
Confidence 43 1110 0 0123334467777654 567778876554443332 22 22456789988888887654
Q ss_pred CCCCeEEEecCCCCCcEEEE
Q psy14257 465 SKAPRIERCSMSGEHRSVIV 484 (841)
Q Consensus 465 ~~~~~I~r~~ldG~~~~~i~ 484 (841)
.....++..+++|...+.+.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCceEEEEEECCCCceEEcc
Confidence 22334556678888776664
|
|
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00038 Score=43.22 Aligned_cols=23 Identities=43% Similarity=1.054 Sum_probs=21.2
Q ss_pred ceEEeecCCeeecCCCCceEeCC
Q psy14257 193 SYKCTCHAGYELEPDMFTCKSKS 215 (841)
Q Consensus 193 ~~~C~C~~G~~l~~d~~~C~~~~ 215 (841)
+|+|.|++||.+..++++|.+++
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 68999999999999999999883
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0013 Score=43.11 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=25.2
Q ss_pred cCCCceEEEEccCCEEEEEeCCCCeEEEE
Q psy14257 348 IQWPSSLVIDYNQDILYWCDSHLNTVESV 376 (841)
Q Consensus 348 ~~~P~glavD~~~~~lYwaD~~~~~I~~~ 376 (841)
+..|.||++| .++.||++|.++++|+++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 889999999999999864
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0016 Score=42.70 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=25.0
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
|..|.||++| .+++||++|..+++|.++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 789999999999999864
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.19 Score=54.93 Aligned_cols=120 Identities=22% Similarity=0.337 Sum_probs=71.4
Q ss_pred CCCCCceeEEEc--CCCCeEEEEecCCCCCeEEEecC--CCCCc--EEEE-EecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 441 GDMESPRAIALD--PRFGLLFWTDWDSKAPRIERCSM--SGEHR--SVIV-RVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 441 ~~l~~P~giavd--~~~g~Ly~td~~~~~~~I~r~~l--dG~~~--~~i~-~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
..+..|.|+++- +..|.+|.--.+ +.+.++...| ++... -.++ .. ..-..|.|+++|...++||+++.
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f----~~~sQ~EGCVVDDe~g~LYvgEE 227 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREF----KVGSQPEGCVVDDETGRLYVGEE 227 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEE----E-SS-EEEEEEETTTTEEEEEET
T ss_pred cccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEe----cCCCcceEEEEecccCCEEEecC
Confidence 356779999984 456755555433 2456666555 34432 1222 21 12357999999999999999998
Q ss_pred CCCeEEEEEcC--C-CeeEEEEcC-C-CCCCcceEEEEe-----cCeEEEEeCCCCeEEEEec
Q psy14257 514 KSDSIHTVTYD--G-KDHHVVLSN-H-DSLTHPFAIALF-----ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 514 ~~~~I~~~~~d--G-~~~~~i~~~-~-~~l~~P~gla~~-----~~~lY~td~~~~~i~~~~~ 566 (841)
. .-|++++.+ + ..++.+... . ......-||+++ .+||.+++.++++....+.
T Consensus 228 ~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 228 D-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp T-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred c-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 5 579999876 3 344444222 2 223456899985 2689999988877655553
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.9 Score=48.77 Aligned_cols=300 Identities=12% Similarity=0.089 Sum_probs=145.6
Q ss_pred CeEEEEecCC--CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC---------CCeEEEEEcC
Q psy14257 456 GLLFWTDWDS--KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK---------SDSIHTVTYD 524 (841)
Q Consensus 456 g~Ly~td~~~--~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~---------~~~I~~~~~d 524 (841)
.++|+.|..- ...+++.++.|- .+.+.... .. ..| .+++.++++.+|.++.. .+.|+.+|..
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~--~k~lGmi~---~g-~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADS--GKLLGMID---TG-FLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTT--TEEEEEEE---EE-SSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred cEEEEECCccccccceEEEEECCC--CcEEEEee---cc-cCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 3677777421 134566665443 33333310 12 223 37788999999998742 3466667766
Q ss_pred CCee--EEEEcCC---CCCCcceEEEE--ecCeEEEEeCC-CCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCC
Q psy14257 525 GKDH--HVVLSNH---DSLTHPFAIAL--FENHVYWTDWR-TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCE 596 (841)
Q Consensus 525 G~~~--~~i~~~~---~~l~~P~gla~--~~~~lY~td~~-~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~ 596 (841)
.-.. .+.+... ..+.++.-+++ .+.++|+-+.. ..+|..++...++-...+.-
T Consensus 76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------------------- 136 (342)
T PF06433_consen 76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT------------------- 136 (342)
T ss_dssp TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-------------------
T ss_pred cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-------------------
Confidence 5422 2222221 11234444444 56788888754 45676777655554443331
Q ss_pred CCCCCCccccccCCCCceeeeCCCCceee----cCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCce
Q psy14257 597 MNNGNCSHLCLIGMNGTYKCQCPHVMKLM----SDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPN 672 (841)
Q Consensus 597 ~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~----~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 672 (841)
.||.++- +.++..++-.|.+|--+. .+|+. . .... .++ +... .++ +.+
T Consensus 137 ---PGC~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~--------~--~~~t---~~F-~~~~---dp~-----f~~-- 188 (342)
T PF06433_consen 137 ---PGCWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKE--------A--QKST---KVF-DPDD---DPL-----FEH-- 188 (342)
T ss_dssp ---TSEEEEE-EEETTEEEEEETTSCEEEEEETSTSSE--------E--EEEE---EES-STTT---S-B------S---
T ss_pred ---CCEEEEE-ecCCCceEEEecCCceEEEEECCCCCE--------e--Eeec---ccc-CCCC---ccc-----ccc--
Confidence 5788774 444455778888874332 22210 0 0000 111 1110 111 011
Q ss_pred EEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccc----ccccccccCceEEEEeeCCCCCcceeEEeec
Q psy14257 673 NLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTP----LSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748 (841)
Q Consensus 673 ~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~ 748 (841)
=+|+..++.+||+. -.+.|+.+++.|...+.+ ....++ |+ ..|| -++=+-+|++..
T Consensus 189 -~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~--~~~~~~-t~~e~~~~Wr---------------PGG~Q~~A~~~~ 248 (342)
T PF06433_consen 189 -PAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFG--KPWSLL-TDAEKADGWR---------------PGGWQLIAYHAA 248 (342)
T ss_dssp --EEETTTTEEEEEB-TTSEEEEEEETTSSEEEE--EEEESS--HHHHHTTEE---------------E-SSS-EEEETT
T ss_pred -cceECCCCeEEEEe-cCCEEEEEeccCCccccc--Cccccc-CccccccCcC---------------Ccceeeeeeccc
Confidence 24566778889987 689999999988762111 000000 11 0111 122345889988
Q ss_pred CCcEEEEecCC-----CCC--eEEEEecCCcceEEEEc----CCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEE
Q psy14257 749 AQNMFIAVSSP-----TQS--KIVVCNLEGEYQTTILS----NESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817 (841)
Q Consensus 749 ~~~LYw~~~~~-----~~~--~I~v~~l~g~~~~~~~~----~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~ 817 (841)
+++||+..... +.. .|-++++....|..-+. ..+...++-.+|.=++++...+.||.-|.... ..+.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG-k~~~~ 327 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG-KLVRS 327 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC-cEEee
Confidence 99999875211 112 35555554443321111 11222333567777777777778888887652 34555
Q ss_pred EecCCCceEEEec
Q psy14257 818 AFMDGTKRETVVS 830 (841)
Q Consensus 818 ~~~dG~~~~~l~~ 830 (841)
..-=|...+++..
T Consensus 328 ~~~lG~~~~l~~~ 340 (342)
T PF06433_consen 328 IEQLGETPTLILT 340 (342)
T ss_dssp E---SSS--EEEE
T ss_pred hhccCCCceEEEe
Confidence 5545555555543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.11 Score=59.80 Aligned_cols=234 Identities=13% Similarity=0.069 Sum_probs=133.9
Q ss_pred eeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC-----------CEEE
Q psy14257 264 MVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG-----------GIEK 332 (841)
Q Consensus 264 ~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~-----------~I~~ 332 (841)
.||.-|-.+.+|-|++++- +.-.+.+-........|+++....+..|+|-..--..| -.++| .+..
T Consensus 143 ~~findk~n~Rvari~l~~--~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~P-lpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 143 YLFINDKANTRVARIRLDV--MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIP-LPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred EEEEecCCCcceEEEECcc--EeeceeEeCCCccCccccCccccCCccEEEeCcccccc-cCCCCCEeecccceeEEEEE
Confidence 4999999999999998862 11222333455667888888743466888744222212 11122 3333
Q ss_pred EccCCCccccccc-cCcCCCceEEEEccCCEEEEEeC---CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcc
Q psy14257 333 AGMHGENRSPLVT-KNIQWPSSLVIDYNQDILYWCDS---HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408 (841)
Q Consensus 333 ~~~dG~~~~~l~~-~~~~~P~glavD~~~~~lYwaD~---~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~av 408 (841)
++.+ ...++.. .--.+|..++++++++++|++.+ ..+.+..++..-....++++..... ++
T Consensus 220 ID~e--tmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie-------------a~ 284 (635)
T PRK02888 220 VDAE--TMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE-------------EA 284 (635)
T ss_pred EECc--cceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHH-------------Hh
Confidence 3333 1111111 11238999999999999999963 3455655555443333333332100 00
Q ss_pred ccccceEEEEecCCCcEEEEccCC-----ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC----
Q psy14257 409 LWIGKNLYWVESNLDQIEVAKLSG-----QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH---- 479 (841)
Q Consensus 409 dw~~~~LY~tD~~~~~I~v~~~~G-----~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~---- 479 (841)
--.++..|+. .++|.+++... ......+..+ .+|.|++++|+..++|++... .+.+...++.--.
T Consensus 285 vkdGK~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVankl--S~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 285 VKAGKFKTIG---GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKL--SPTVTVIDVRKLDDLFD 358 (635)
T ss_pred hhCCCEEEEC---CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCC--CCcEEEEEChhhhhhhh
Confidence 0112445542 35677776553 2222223222 689999999999999999977 6777777764321
Q ss_pred -----cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 480 -----RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 480 -----~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
+.+++.. ...-..|-..++|.. ++.|.+-.-.+.|.+.+++.
T Consensus 359 ~~~~~~~~vvae---vevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAE---PELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEe---eccCCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 2223321 022346888889854 67887766566777776553
|
|
| >KOG4289|consensus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.006 Score=73.41 Aligned_cols=86 Identities=26% Similarity=0.582 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCCCCccc----ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccccc---cccCCCCCcc-
Q psy14257 113 ALVCDGEPACFNGEDEMFC----DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYL---HPCEAWGTCS- 182 (841)
Q Consensus 113 ~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~---~eC~~~~~Cs- 182 (841)
.++| .|++|+.+..| |+|- .++|.+ .|....|+|+|.|.+||. |++|+-- ..| .++.|-
T Consensus 1221 glrC----rCPpGFTgd~CeTeiDlCY--s~pC~nng~C~srEggYtCeCrpg~t----GehCEvs~~agrC-vpGvC~n 1289 (2531)
T KOG4289|consen 1221 GLRC----RCPPGFTGDYCETEIDLCY--SGPCGNNGRCRSREGGYTCECRPGFT----GEHCEVSARAGRC-VPGVCKN 1289 (2531)
T ss_pred ceeE----eCCCCCCcccccchhHhhh--cCCCCCCCceEEecCceeEEecCCcc----ccceeeecccCcc-ccceecC
Confidence 4678 99999988788 6775 457754 899999999999999997 7788732 234 456663
Q ss_pred -CceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 183 -QDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 183 -~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
..|.+. ..|++.|.|+.| . -....|..
T Consensus 1290 ggtC~~~-~nggf~c~Cp~g-e--~e~prC~v 1317 (2531)
T KOG4289|consen 1290 GGTCVNL-LNGGFCCHCPYG-E--FEDPRCEV 1317 (2531)
T ss_pred CCEEeec-CCCceeccCCCc-c--cCCCceEE
Confidence 367765 268899999998 2 23455654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.48 Score=48.98 Aligned_cols=233 Identities=15% Similarity=0.147 Sum_probs=119.6
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-CCccccccccCc-CCCceEEEEccCCEEEEEeCCCCeEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GENRSPLVTKNI-QWPSSLVIDYNQDILYWCDSHLNTVES 375 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~~~~l~~~~~-~~P~glavD~~~~~lYwaD~~~~~I~~ 375 (841)
..++++.|-.-..-|+|.+||.. .+..++.. -...+.+..-++ +...|+.+ .++..|++|...+- ..
T Consensus 84 ~~~~l~~Dv~vse~yvyvad~ss--------GL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgf-Li 152 (370)
T COG5276 84 NARDLFADVRVSEEYVYVADWSS--------GLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGF-LI 152 (370)
T ss_pred ehhhhhheeEecccEEEEEcCCC--------ceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcE-EE
Confidence 34455555554667899999864 45554432 222222222222 33344444 58899999975443 33
Q ss_pred EEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCC-CC-CceeEEEcC
Q psy14257 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGD-ME-SPRAIALDP 453 (841)
Q Consensus 376 ~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~-l~-~P~giavd~ 453 (841)
+++.....-++...-.. +.-..+.+...++.-|++....+ +...+.......+++..- .. ..+++-+.
T Consensus 153 vdvsdpssP~lagrya~--------~~~d~~~v~ISGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vs- 222 (370)
T COG5276 153 VDVSDPSSPQLAGRYAL--------PGGDTHDVAISGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVS- 222 (370)
T ss_pred EECCCCCCceeeeeecc--------CCCCceeEEEecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEec-
Confidence 44433222222211111 00001223334466777765543 444555444444444322 21 33444444
Q ss_pred CCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeE---EEeccCCEEEEEeCCCCeEEEE---EcCCCe
Q psy14257 454 RFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGL---TLDYQLTRIYWIDAKSDSIHTV---TYDGKD 527 (841)
Q Consensus 454 ~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~gl---alD~~~~~LYw~d~~~~~I~~~---~~dG~~ 527 (841)
..+.|.++.+ ..+.-.+.++...-.++.. ..-..|.++ .+ .+++.|++|...+ +..+ ++.+.+
T Consensus 223 -dnr~y~vvy~---egvlivd~s~~ssp~~~gs----yet~~p~~~s~v~V--s~~~~Yvadga~g-l~~idisnp~spf 291 (370)
T COG5276 223 -DNRAYLVVYD---EGVLIVDVSGPSSPTVFGS----YETSNPVSISTVPV--SGEYAYVADGAKG-LPIIDISNPPSPF 291 (370)
T ss_pred -CCeeEEEEcc---cceEEEecCCCCCceEeec----cccCCcccccceec--ccceeeeeccccC-ceeEeccCCCCCc
Confidence 4578888876 3566666666543333331 334445554 44 5789999996443 3333 333333
Q ss_pred eEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEE
Q psy14257 528 HHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 528 ~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~ 564 (841)
...-.... -.+..||..+++++|++|..++.|.-+
T Consensus 292 l~ss~~t~--g~~a~gi~ay~~y~yiadkn~g~vV~~ 326 (370)
T COG5276 292 LSSSLDTA--GYQAAGIRAYGNYNYIADKNTGAVVDA 326 (370)
T ss_pred hhccccCC--CccccceEEecCeeEeccCCceEEEeC
Confidence 32211111 125679999999999999887766533
|
|
| >KOG3509|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0077 Score=72.20 Aligned_cols=110 Identities=33% Similarity=0.746 Sum_probs=87.6
Q ss_pred CeeccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCC
Q psy14257 1 MTCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDET 80 (841)
Q Consensus 1 ~~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~ 80 (841)
|+|......|++..||.+-+|+....|....|++.+++|. +++|.-..|.||...+|. +++++.+|
T Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~----------- 66 (964)
T KOG3509|consen 1 NECVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCN-NPRCVQPEALLDADSTCG--PNSTPSGC----------- 66 (964)
T ss_pred CchhhhhhhhccchhhHhhcccCCCccccccCCcchhccC-CccccCchhhhccccccC--CCCCcCCc-----------
Confidence 5788899999999999999999954555688999999998 999999999999999999 66644332
Q ss_pred CccCCCCCCCCCCCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 81 NCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 81 ~C~~c~~~~~c~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
.. .. -+..|.+..+.|.+- -.|.+.+..|+|.++|.+++++..|
T Consensus 67 --~~-~~---~~s~~~~~~~~c~~~-~~~~~~~~~~~g~~~~~~~~~~~~~ 110 (964)
T KOG3509|consen 67 --NA-KP---SASDCKPTETQCRDR-LRCNPQSFQCDGTNDCKDGSDEVGC 110 (964)
T ss_pred --cc-cc---cccccCCcccccccc-hhcCCccccccCCCCCCccchhccc
Confidence 21 00 124467777888874 5788889999999999999977653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.68 Score=47.98 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=88.8
Q ss_pred ceEEEEecCCC--cEEEEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEeccc
Q psy14257 413 KNLYWVESNLD--QIEVAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489 (841)
Q Consensus 413 ~~LY~tD~~~~--~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~ 489 (841)
+.||-+....+ +|.+++++. +..+..--..-.--.||++- ++.||.-.|. ++..+..+.+- .+.+....
T Consensus 56 g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk--~~~~f~yd~~t--l~~~~~~~-- 127 (264)
T PF05096_consen 56 GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWK--EGTGFVYDPNT--LKKIGTFP-- 127 (264)
T ss_dssp TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESS--SSEEEEEETTT--TEEEEEEE--
T ss_pred CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEec--CCeEEEEcccc--ceEEEEEe--
Confidence 44444443333 555666553 33222221222345789986 5799999998 78889988863 33333321
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC-eeEEEE-c-CCCCCCcceEEEEecCeEEEEeCCCCeEEEEec
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK-DHHVVL-S-NHDSLTHPFAIALFENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~-~~~~i~-~-~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~ 566 (841)
--...=||+-| +++||.+|. +++|+..|+..- ..+.+. . ....+..---|...+|+||---|.+..|.++++
T Consensus 128 --y~~EGWGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 128 --YPGEGWGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp ---SSS--EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred --cCCcceEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 12355688865 788999996 789999998753 222221 1 111122223456678999999999999999999
Q ss_pred cCCcceEEEe
Q psy14257 567 WNGSDVTLIQ 576 (841)
Q Consensus 567 ~~g~~~~~i~ 576 (841)
.+|.-...+.
T Consensus 203 ~tG~V~~~iD 212 (264)
T PF05096_consen 203 ETGKVVGWID 212 (264)
T ss_dssp TT-BEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9998776653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=2.2 Score=43.80 Aligned_cols=184 Identities=12% Similarity=0.089 Sum_probs=99.3
Q ss_pred cCCEEEEEeCCCCeEEEEEe-cCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEc-cCCceEE
Q psy14257 359 NQDILYWCDSHLNTVESVRV-DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAK-LSGQFRR 436 (841)
Q Consensus 359 ~~~~lYwaD~~~~~I~~~~l-dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~-~~G~~~~ 436 (841)
.+++||+++ ..+.|+.++. +|+..-.......+... ....++.||+.... ++|..++ .+|+..-
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~------------~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA------------PVVDGGRVYVGTSD-GSLYALDAKTGKVLW 100 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG------------EEEETTEEEEEETT-SEEEEEETTTSCEEE
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce------------eeecccccccccce-eeeEecccCCcceee
Confidence 467777774 5667777776 44322111110000000 01123788887643 4888888 5676655
Q ss_pred EE-ecC----CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCC--------ceeEEEe
Q psy14257 437 TL-IAG----DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAW--------PNGLTLD 502 (841)
Q Consensus 437 ~l-~~~----~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~--------P~glalD 502 (841)
.. ... .+..+...+++ ++.+|.... .+.|..+++. |...... .. ....... ...+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~g~l~~~d~~tG~~~w~~-~~--~~~~~~~~~~~~~~~~~~~~~- 171 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS---SGKLVALDPKTGKLLWKY-PV--GEPRGSSPISSFSDINGSPVI- 171 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEE--TTEEEEEET---CSEEEEEETTTTEEEEEE-ES--STT-SS--EEEETTEEEEEEC-
T ss_pred eeccccccccccccccCceEe--cCEEEEEec---cCcEEEEecCCCcEEEEe-ec--CCCCCCcceeeecccccceEE-
Confidence 43 211 12234455555 567777774 3688888864 4332222 10 0001111 122333
Q ss_pred ccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceE-EEEecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 503 YQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFA-IALFENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 503 ~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~g-la~~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
.+++||++..... +..+++....+. . +.. ...+.+ +...++.||+++ ..+.|+.++..+|+..
T Consensus 172 -~~~~v~~~~~~g~-~~~~d~~tg~~~-w-~~~--~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 172 -SDGRVYVSSGDGR-VVAVDLATGEKL-W-SKP--ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVV 235 (238)
T ss_dssp -CTTEEEEECCTSS-EEEEETTTTEEE-E-EEC--SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEEE
T ss_pred -ECCEEEEEcCCCe-EEEEECCCCCEE-E-Eec--CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCEE
Confidence 3569998886544 555677766543 2 222 344555 556889999999 7899999999888743
|
... |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.6 Score=48.00 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=53.3
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCC---CCCcEEEEEecccCCCCCCceeEEEec---cCCEEEEEeCCCCe
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS---GEHRSVIVRVDLLTSRGAWPNGLTLDY---QLTRIYWIDAKSDS 517 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld---G~~~~~i~~~~~~~~~~~~P~glalD~---~~~~LYw~d~~~~~ 517 (841)
.+|.|+++|...|+||+.+.. ..|||+..+ +..++.+... ....-.....||+|=+ ..+.|.+++.+++.
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~---~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED---VGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT---TEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred CcceEEEEecccCCEEEecCc---cEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 489999999999999999954 689999986 3344444331 1111224578999832 24688889998888
Q ss_pred EEEEEcCCC
Q psy14257 518 IHTVTYDGK 526 (841)
Q Consensus 518 I~~~~~dG~ 526 (841)
...++..+.
T Consensus 284 f~Vy~r~~~ 292 (381)
T PF02333_consen 284 FAVYDREGP 292 (381)
T ss_dssp EEEEESSTT
T ss_pred EEEEecCCC
Confidence 888887774
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0033 Score=43.73 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=24.1
Q ss_pred ccccCCCCC--CCcccCCCCcEEecCCCceecCCCCcc
Q psy14257 134 KQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 134 C~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
|...++.|+ ..|.+++++|.|.|++||. .||..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 344566785 4899999999999999998 466655
|
; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.69 Score=45.51 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=108.0
Q ss_pred ceeEEEeccCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcCCCCCC----cceEEEEecCeEEEEeCCCCeEEEEeccCC
Q psy14257 496 PNGLTLDYQLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSNHDSLT----HPFAIALFENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 496 P~glalD~~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~~~~l~----~P~gla~~~~~lY~td~~~~~i~~~~~~~g 569 (841)
-.||.++ +++||.+.. +..+|++.++.+... +.+.. +. .--|++..++++|.--|..+.-++.++.+=
T Consensus 48 TQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~--~~s~~--l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~ 121 (262)
T COG3823 48 TQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQE--IFSEK--LAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL 121 (262)
T ss_pred hcceeee--CCEEEEeccccccceeEEEeccCceE--EEEee--cCCccccccceeeccceEEEEEeccceeEEEChHHh
Confidence 4677776 568887764 456899999885432 12111 22 124777889999999998887777776432
Q ss_pred cceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccccc-CceeEEeecCCe--
Q psy14257 570 SDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVA-DSQFIIFSRPRE-- 646 (841)
Q Consensus 570 ~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~-~~~~l~~~~~~~-- 646 (841)
+...... .. .+|+-|..|+..-+-. ...||.+-++..
T Consensus 122 ~~lg~~~---------------------------------y~-------GeGWgLt~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 122 EELGRFS---------------------------------YE-------GEGWGLTSDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred hhhcccc---------------------------------cC-------CcceeeecCCcceEeeCCceEEEecCHHHhh
Confidence 2221100 11 1455666554432211 123333322221
Q ss_pred -EEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccccccccccc
Q psy14257 647 -IRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIV 725 (841)
Q Consensus 647 -i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (841)
+..+. .++--.|+.++... -++.++||--=-.+.+|.|++.+.+.+..-+| ++++-....
T Consensus 162 ~~~~v~------VT~~g~pv~~LNEL-----E~VdG~lyANVw~t~~I~rI~p~sGrV~~wid------lS~L~~~~~-- 222 (262)
T COG3823 162 ELDTVQ------VTDDGVPVSKLNEL-----EWVDGELYANVWQTTRIARIDPDSGRVVAWID------LSGLLKELN-- 222 (262)
T ss_pred hcceEE------EEECCeecccccce-----eeeccEEEEeeeeecceEEEcCCCCcEEEEEE------ccCCchhcC--
Confidence 11111 11112345444432 34578887555567899999998776211111 122111110
Q ss_pred CceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecC
Q psy14257 726 GGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLE 770 (841)
Q Consensus 726 ~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~ 770 (841)
......+-++|||.|+...++|+| ...-+.+.-+.++
T Consensus 223 ------~~~~~~nvlNGIA~~~~~~r~~iT--GK~wp~lfEVk~~ 259 (262)
T COG3823 223 ------LDKSNDNVLNGIAHDPQQDRFLIT--GKLWPLLFEVKLD 259 (262)
T ss_pred ------ccccccccccceeecCcCCeEEEe--cCcCceeEEEEec
Confidence 111235678999999999999999 5444555444443
|
|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.0091 Score=61.46 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=31.1
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCC
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLI 167 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~ 167 (841)
++|...++.|.+.|.+++|+|.|.|+.||.+.++++
T Consensus 188 ~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 188 DLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred hhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 467666678999999999999999999999887765
|
Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. |
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.012 Score=60.65 Aligned_cols=43 Identities=30% Similarity=0.557 Sum_probs=37.1
Q ss_pred CCCccccccccC-CCCCccCceeecCCCCceEEeecCCeeecCCCC
Q psy14257 165 DLITCSYLHPCE-AWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMF 209 (841)
Q Consensus 165 d~~~C~~~~eC~-~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~ 209 (841)
.++.|.+.++|. ....|.+.|.++ .|+|.|.|+.||.+..+++
T Consensus 180 ~~~~C~~~~~C~~~~~~c~~~C~~~--~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 180 QGKICVVPDLCATLSHVCQQVCIST--PGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccccCcCchhhcCCCCCccceEEcC--CCCEEeECCCCccCCCCCC
Confidence 467899999997 456799999999 9999999999999877664
|
Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. |
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.019 Score=40.59 Aligned_cols=28 Identities=32% Similarity=0.806 Sum_probs=22.7
Q ss_pred CCCCC--CcccCCCCcEEecCCCceecCCCCcc
Q psy14257 139 SDCHH--DCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 139 ~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
..|.+ .|.++.++|.|.|++||. ++..|
T Consensus 9 ~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 46754 899999999999999997 45555
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.8 Score=45.70 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-----ccc-----ccccc---Cc----CCCceEEEEc
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE-----NRS-----PLVTK---NI----QWPSSLVIDY 358 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~-----~~~-----~l~~~---~~----~~P~glavD~ 358 (841)
+..-.||+.++ .+..|+..+|.+.. ....+++++..+.. ... ++... .+ ..|.||++ .
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~ 93 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPN---KGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-P 93 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCC---CCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-e
Confidence 33456777775 34567777876641 12345666554431 000 00000 11 26779999 6
Q ss_pred cCCEEEEEeCCC------CeEEEEEecCCccEEEEeeeeecCCCc--cccCCCC---CCccccccceEEEEecCC-----
Q psy14257 359 NQDILYWCDSHL------NTVESVRVDGSERTVSFNLEVLGSDSR--VGIPNCR---PEDNLWIGKNLYWVESNL----- 422 (841)
Q Consensus 359 ~~~~lYwaD~~~------~~I~~~~ldG~~~~~~~~~~~~~~~~~--~~i~~~~---~~avdw~~~~LY~tD~~~----- 422 (841)
.++.+||++... ++|++++.+|...+.+.-+..+..... -+.+.++ ++++...+..||.+-...
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 889999999999 999999999988666522222211100 1222221 234555555677654321
Q ss_pred ----------CcEEEEccC--Cce-EEEEec-C------CCCCceeEEEcCCCCeEEEEecCC-----CCCeEEEecCCC
Q psy14257 423 ----------DQIEVAKLS--GQF-RRTLIA-G------DMESPRAIALDPRFGLLFWTDWDS-----KAPRIERCSMSG 477 (841)
Q Consensus 423 ----------~~I~v~~~~--G~~-~~~l~~-~------~l~~P~giavd~~~g~Ly~td~~~-----~~~~I~r~~ldG 477 (841)
-+|..++.. |.. ...... + .-..+..|+..+. +.|++-+... ...+|+++++.+
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d-~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD-GRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC-CcEEEEEccCCCCccceEEEEEEEccc
Confidence 246666654 211 111111 1 2345667777665 5578887541 245788888764
Q ss_pred C
Q psy14257 478 E 478 (841)
Q Consensus 478 ~ 478 (841)
.
T Consensus 253 a 253 (326)
T PF13449_consen 253 A 253 (326)
T ss_pred c
Confidence 3
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.65 E-value=2.6 Score=47.66 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=100.3
Q ss_pred cCcCCCceEEEEccCCEEEEEeC----CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccce-EEEE--
Q psy14257 346 KNIQWPSSLVIDYNQDILYWCDS----HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKN-LYWV-- 418 (841)
Q Consensus 346 ~~~~~P~glavD~~~~~lYwaD~----~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~-LY~t-- 418 (841)
.......|+.....+..+|++.. ....++..+.||.+.+.+........... ....+.. .|.+
T Consensus 144 ~~~e~lt~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~----------ws~~~~~~~y~~f~ 213 (425)
T COG0823 144 AIYEKLTGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPA----------WSPDGKKLAYVSFE 213 (425)
T ss_pred hhhhhhcCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceeccc----------cCcCCCceEEEEEe
Confidence 33444555555556677776665 55677888888877766533211111000 0001122 2332
Q ss_pred ecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCcee
Q psy14257 419 ESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNG 498 (841)
Q Consensus 419 D~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~g 498 (841)
.....+|++.+++......++... ..-..-++.|++.+|.++-....+..|+.++++++....+... .... ..
T Consensus 214 ~~~~~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~----~gi~--~~ 286 (425)
T COG0823 214 LGGCPRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG----FGIN--TS 286 (425)
T ss_pred cCCCceEEEEeccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC----Cccc--cC
Confidence 222246888888876666665421 2233456788877777776555688999999999886665431 1111 13
Q ss_pred EEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcC
Q psy14257 499 LTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 499 lalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~ 534 (841)
=.+-+++.+||++-.+. -.|++++++|+..+.+-..
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 33456677777765433 3899999999887665443
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.6 Score=46.13 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=32.1
Q ss_pred CCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 538 LTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 538 l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
+..|.+--.++|+||+.|+.++.|.++++.+|+...+.
T Consensus 202 LsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va 239 (335)
T TIGR03032 202 LSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVA 239 (335)
T ss_pred ccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEE
Confidence 66788888899999999999999999998778755543
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=94.64 E-value=6.8 Score=41.05 Aligned_cols=231 Identities=11% Similarity=0.081 Sum_probs=121.9
Q ss_pred CCEEEEcc-CCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 328 GGIEKAGM-HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 328 ~~I~~~~~-dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
..|..++. +|+..+++..++.+--...-.+..+.-||=+.....+|+-.++........+.-.. +....+
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~---~~V~sL------ 106 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK---KRVNSL------ 106 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCC---ceEEEE------
Confidence 35556653 56666666655433333333333334444444455667666664433222211100 000000
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC--CCCCcEEEE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM--SGEHRSVIV 484 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l--dG~~~~~i~ 484 (841)
.+..+ +..|.+-+..+.|...++.-.....++. +..+--.|+||. |.+|-+-.++ ..|.-.++ =+.+.....
T Consensus 107 ~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~-GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 107 SVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPE-GLIFALANGS--ELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred EecCC-CCeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCC-CcEEEEecCC--CeEEEEEecccCCCCceeE
Confidence 01111 4677777777788888887665555553 345556899986 8887777663 35555554 233322222
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE-cCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEE
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT-YDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVI 562 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~-~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~ 562 (841)
... ......=+.|.+.+.++.|.++.. .+.|+.++ ++|.-..++-.......-|.+-+. -++....+-...++|.
T Consensus 181 ~i~--~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 181 SIT--DNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIH 257 (311)
T ss_pred ccC--CCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEE
Confidence 210 022334467778776666666554 45566554 467655555433222334433333 3566666666778898
Q ss_pred EEeccCCcceEEEe
Q psy14257 563 RANKWNGSDVTLIQ 576 (841)
Q Consensus 563 ~~~~~~g~~~~~i~ 576 (841)
..+..+|..+....
T Consensus 258 vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 258 VWNLETGKKVAVLR 271 (311)
T ss_pred EEEcCCCcEeeEec
Confidence 88887777665543
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.52 Score=47.45 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=93.0
Q ss_pred cCceeEEeecCCeEEEEecCCCCccccceeecCCC-CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeee
Q psy14257 634 ADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQV-FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFE 712 (841)
Q Consensus 634 ~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~ 712 (841)
++..+|..+....||.+++....+.. ...+... +|+.+|.|-...+++|=. .+.++++..++..-.
T Consensus 50 pdk~~LAaa~~qhvRlyD~~S~np~P--v~t~e~h~kNVtaVgF~~dgrWMyTg-seDgt~kIWdlR~~~---------- 116 (311)
T KOG0315|consen 50 PDKKDLAAAGNQHVRLYDLNSNNPNP--VATFEGHTKNVTAVGFQCDGRWMYTG-SEDGTVKIWDLRSLS---------- 116 (311)
T ss_pred CCcchhhhccCCeeEEEEccCCCCCc--eeEEeccCCceEEEEEeecCeEEEec-CCCceEEEEeccCcc----------
Confidence 33556777778889999998776653 3334333 789999999877777744 478999988887644
Q ss_pred eecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc-ceEEEEcCCCCCCCcCCCc
Q psy14257 713 FYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE-YQTTILSNESNDTSTLSKI 791 (841)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~-~~~~~~~~~~~~~~~l~~p 791 (841)
.+.... ....++.+.+.+....|+.. | .++.|.+.+|... ....++..+ ....
T Consensus 117 ----------------~qR~~~-~~spVn~vvlhpnQteLis~--d-qsg~irvWDl~~~~c~~~liPe~------~~~i 170 (311)
T KOG0315|consen 117 ----------------CQRNYQ-HNSPVNTVVLHPNQTELISG--D-QSGNIRVWDLGENSCTHELIPED------DTSI 170 (311)
T ss_pred ----------------cchhcc-CCCCcceEEecCCcceEEee--c-CCCcEEEEEccCCccccccCCCC------Ccce
Confidence 222222 33567889999999999998 4 4788999999765 444555431 5788
Q ss_pred eEEEEeCCCCeE
Q psy14257 792 SSIAVWPVKGKM 803 (841)
Q Consensus 792 ~~iavd~~~g~l 803 (841)
++|+|+|...+|
T Consensus 171 ~sl~v~~dgsml 182 (311)
T KOG0315|consen 171 QSLTVMPDGSML 182 (311)
T ss_pred eeEEEcCCCcEE
Confidence 899999975544
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.1 Score=48.34 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=80.8
Q ss_pred eCCCCCccceEE---eeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC
Q psy14257 293 QTGLSTAEGLAV---DWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH 369 (841)
Q Consensus 293 ~~~l~~p~giav---D~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~ 369 (841)
.-|--+-|+.+| ++ +++.+|-+| |...+.|+|+-.+......= ....-.+ ...++||++-..
T Consensus 240 AlGRf~HE~a~v~~~~~--~~~vvY~gD------D~~~~~lYkFVs~~~~~~~~------~~~~~~l-l~~GtLyaak~~ 304 (524)
T PF05787_consen 240 ALGRFAHEAAAVVLADP--GRVVVYMGD------DGRNGYLYKFVSDKPWDPGD------RAANRDL-LDEGTLYAAKFN 304 (524)
T ss_pred ecccccccceeEEeecC--CeEEEEEEe------cCCCCeEEEEecCCCCCCcc------cchhhhh-hhCCEeceEEEC
Confidence 334446777787 65 345555555 45566888887765422100 0000000 146888888763
Q ss_pred -CCeEEEEEecCCc------------cEEEEeeeeecCCCccccCCCCCCc--cccccceEEEEecCCC-----------
Q psy14257 370 -LNTVESVRVDGSE------------RTVSFNLEVLGSDSRVGIPNCRPED--NLWIGKNLYWVESNLD----------- 423 (841)
Q Consensus 370 -~~~I~~~~ldG~~------------~~~~~~~~~~~~~~~~~i~~~~~~a--vdw~~~~LY~tD~~~~----------- 423 (841)
.+.++-+.|.-.. ..+++.....+ +..-+.+..+++. +++.++.||++-+...
T Consensus 305 ~~g~~~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA-~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n 383 (524)
T PF05787_consen 305 QDGTGEWVPLGHGQGGLTAKNGFADQADVLIETRRAA-DAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAAN 383 (524)
T ss_pred CCCcEEEEECCCcccccccCCCCCChHHhhhhhhhcc-ccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCC
Confidence 3556666653221 00111110000 1111123345554 4588899999875544
Q ss_pred --------cEEEEccCCc-------eEEE-Eec----------------CCCCCceeEEEcCCCCeEEEEe
Q psy14257 424 --------QIEVAKLSGQ-------FRRT-LIA----------------GDMESPRAIALDPRFGLLFWTD 462 (841)
Q Consensus 424 --------~I~v~~~~G~-------~~~~-l~~----------------~~l~~P~giavd~~~g~Ly~td 462 (841)
+|+++..++. .... +.. ..+..|-+|++|+. |.||+.+
T Consensus 384 ~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~-G~LwI~e 453 (524)
T PF05787_consen 384 PRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPD-GNLWIQE 453 (524)
T ss_pred cccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCC-CCEEEEe
Confidence 7888887765 2222 221 12679999999996 5566654
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.02 E-value=2 Score=46.84 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=47.1
Q ss_pred CceeEEEcCCCCeEEEEecCCCC------CeEEEecCCCCCcEEE-EEeccc--------CCCCCCceeEEEeccCCEEE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKA------PRIERCSMSGEHRSVI-VRVDLL--------TSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~------~~I~r~~ldG~~~~~i-~~~~~~--------~~~~~~P~glalD~~~~~LY 509 (841)
.|.||++ +.+|.+||++-+ . ++|++++++|.....+ +...+. ...=....|||+.+.+++||
T Consensus 86 D~Egi~~-~~~g~~~is~E~--~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEG--GRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLF 162 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCC--ccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEE
Confidence 5679999 677999999977 6 9999999999876555 221110 01123457899998877788
Q ss_pred EEeC
Q psy14257 510 WIDA 513 (841)
Q Consensus 510 w~d~ 513 (841)
.+-.
T Consensus 163 ~~~E 166 (326)
T PF13449_consen 163 AAME 166 (326)
T ss_pred EEEC
Confidence 8653
|
|
| >KOG1225|consensus | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.19 Score=57.09 Aligned_cols=61 Identities=26% Similarity=0.610 Sum_probs=40.1
Q ss_pred CCCCCCCCccc--ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEE
Q psy14257 121 ACFNGEDEMFC--DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKC 196 (841)
Q Consensus 121 ~C~~g~de~~C--~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C 196 (841)
.|.+||.+..| ..|. ..|+ .+|. .-+|.|.+||. |..|.... |...+ .|. .+ |
T Consensus 299 iC~~g~~G~dCs~~~cp---adC~g~G~Ci----~G~C~C~~Gy~----G~~C~~~~-C~~~g----~cv-----~g--C 355 (525)
T KOG1225|consen 299 ICNPGYSGKDCSIRRCP---ADCSGHGKCI----DGECLCDEGYT----GELCIQRA-CSGGG----QCV-----NG--C 355 (525)
T ss_pred ecCCCccccccccccCC---ccCCCCCccc----CCceEeCCCCc----CCcccccc-cCCCc----eec-----cC--c
Confidence 89999988777 2332 4564 3676 34899999997 66676553 53333 332 23 8
Q ss_pred eecCCeee
Q psy14257 197 TCHAGYEL 204 (841)
Q Consensus 197 ~C~~G~~l 204 (841)
.|..||..
T Consensus 356 ~C~~Gw~G 363 (525)
T KOG1225|consen 356 KCKKGWRG 363 (525)
T ss_pred eeccCccC
Confidence 89999874
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.14 Score=43.60 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=29.8
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
..+..|+||++|+..+.||+++...+.|..+..
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 478999999999999999999999999988764
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.053 Score=37.36 Aligned_cols=24 Identities=33% Similarity=0.879 Sum_probs=21.3
Q ss_pred CCCCC-CcccCCCCcEEecCCCcee
Q psy14257 139 SDCHH-DCYNTPEGFMCVCPRDMYL 162 (841)
Q Consensus 139 ~~C~~-~C~~~~g~~~C~C~~Gy~l 162 (841)
..|.+ .|.++.++|.|.|++||.+
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCcc
Confidence 56877 8999999999999999975
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.61 E-value=2.1 Score=42.21 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=48.4
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEec------------CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA------------GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS 474 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~------------~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ 474 (841)
.+.|+.|.||--=+.+.+|.+++++...+...+. ....-++|||.+|..+++|+|-.. =+.++-+.
T Consensus 180 ELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~--wp~lfEVk 257 (262)
T COG3823 180 ELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL--WPLLFEVK 257 (262)
T ss_pred ceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc--CceeEEEE
Confidence 3567789998777777889988887443332221 123468999999999999998744 56676666
Q ss_pred CCC
Q psy14257 475 MSG 477 (841)
Q Consensus 475 ldG 477 (841)
+++
T Consensus 258 ~~~ 260 (262)
T COG3823 258 LDE 260 (262)
T ss_pred ecC
Confidence 554
|
|
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.071 Score=37.62 Aligned_cols=30 Identities=30% Similarity=0.907 Sum_probs=23.4
Q ss_pred ccccCCCCCccC--ceeecCCCCceEEeecCCee
Q psy14257 172 LHPCEAWGTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 172 ~~eC~~~~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
+++|.....|.+ .|.++ .++|.|.|+.||.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~--~g~~~C~C~~g~~ 33 (39)
T smart00179 2 IDECASGNPCQNGGTCVNT--VGSYRCECPPGYT 33 (39)
T ss_pred cccCcCCCCcCCCCEeECC--CCCeEeECCCCCc
Confidence 456743256755 89998 9999999999997
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.74 Score=53.37 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=52.5
Q ss_pred eCCCCCccceEEeeecCceeEEEeeecCC---------C-CCCCCCCEEEEccCCC-------cccccc-----------
Q psy14257 293 QTGLSTAEGLAVDWIGKNLYMFWAFWSLS---------P-SNSSDGGIEKAGMHGE-------NRSPLV----------- 344 (841)
Q Consensus 293 ~~~l~~p~giavD~~~~~~y~~~td~~~~---------~-~~~~~~~I~~~~~dG~-------~~~~l~----------- 344 (841)
.+.+.+||+|++++..+.+|+..|+.+.. | .....|.|+|...++. ....++
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 34578999999999999999998876621 1 1334678999998765 111111
Q ss_pred ------ccCcCCCceEEEEccCCEEEE-EeCCC
Q psy14257 345 ------TKNIQWPSSLVIDYNQDILYW-CDSHL 370 (841)
Q Consensus 345 ------~~~~~~P~glavD~~~~~lYw-aD~~~ 370 (841)
...+..|-+|++|+.++ ||+ .|...
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~ 457 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGG 457 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCC-EEEEeCCCC
Confidence 22477899999998655 554 44443
|
|
| >KOG1217|consensus | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.34 Score=55.74 Aligned_cols=62 Identities=27% Similarity=0.657 Sum_probs=48.3
Q ss_pred CCcccCCCCcEEecCCCceecCCCCccccccccCCCCCcc--CceeecCCCCceEEeecCCeeecCC
Q psy14257 143 HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCS--QDCEPSVSNNSYKCTCHAGYELEPD 207 (841)
Q Consensus 143 ~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs--~~C~~~~~~g~~~C~C~~G~~l~~d 207 (841)
..|.++.+++.|.|++||.+..- ..|.++++|.....|. ..|.+. .+.|.|.|++||.....
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~C~~~~~c~~~~~C~~~--~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDSCALIASCPNGGTCVNV--PGSYRCTCPPGFTGRLC 306 (487)
T ss_pred CcccccCCceeeeCCCCcccccc-ceeeeccccCCCCccCCCCeeecC--CCcceeeCCCCCCCCCC
Confidence 57899999999999999986431 4677888886432364 489888 77899999999986543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.49 E-value=10 Score=41.70 Aligned_cols=214 Identities=15% Similarity=0.183 Sum_probs=92.9
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeee---------eecCCC--c
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLE---------VLGSDS--R 397 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~---------~~~~~~--~ 397 (841)
.++..+++....++|....-....|..+.+..+.||+... ...|++++++..+.++++..+ +.+.+. .
T Consensus 61 nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~ 139 (386)
T PF14583_consen 61 NLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL 139 (386)
T ss_dssp EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE
T ss_pred ceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE
Confidence 5677777777777776654343446777788899887653 368999999998887775432 111111 0
Q ss_pred cccCCCCCCccccc------c-ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCC--eEEEEe--cCCC
Q psy14257 398 VGIPNCRPEDNLWI------G-KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG--LLFWTD--WDSK 466 (841)
Q Consensus 398 ~~i~~~~~~avdw~------~-~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g--~Ly~td--~~~~ 466 (841)
+|+.. ...||. . +.+|-+ .-..+|..+++.+...++++.+. ..-.-+-+.|... .+|.-+ |..-
T Consensus 140 ~g~e~---~~~d~~~l~~~~~f~e~~~a-~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~~V 214 (386)
T PF14583_consen 140 VGIEI---SREDWKPLTKWKGFREFYEA-RPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWDLV 214 (386)
T ss_dssp EEEEE---EGGG-----SHHHHHHHHHC----EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TTTS
T ss_pred EEEEE---eehhccCccccHHHHHHHhh-CCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCccee
Confidence 11110 001110 0 001111 11347888888877777777654 1222233334332 233333 4422
Q ss_pred CCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEE-eCCCC---eEEEEEcCCCeeEEEEcCCCCCCcce
Q psy14257 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI-DAKSD---SIHTVTYDGKDHHVVLSNHDSLTHPF 542 (841)
Q Consensus 467 ~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~-d~~~~---~I~~~~~dG~~~~~i~~~~~~l~~P~ 542 (841)
..+|+.++.||++.+.+... .....-.-=-..+++.+|++. -...+ .|..++++...++.+... |.
T Consensus 215 d~RiW~i~~dg~~~~~v~~~----~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~------p~ 284 (386)
T PF14583_consen 215 DQRIWTINTDGSNVKKVHRR----MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM------PW 284 (386)
T ss_dssp S-SEEEEETTS---EESS-------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------S
T ss_pred ceEEEEEEcCCCcceeeecC----CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC------Cc
Confidence 46999999999988776431 111000001123333444332 21222 567777776555544432 22
Q ss_pred EE--E-EecCeEEEEeCCC
Q psy14257 543 AI--A-LFENHVYWTDWRT 558 (841)
Q Consensus 543 gl--a-~~~~~lY~td~~~ 558 (841)
.. - -.++.|++.|...
T Consensus 285 ~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 285 CSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEE-TTSSEEEEEE--
T ss_pred eeeeEEcCCCCEEEecCCC
Confidence 22 2 2467899988653
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=93.42 E-value=14 Score=40.40 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=110.6
Q ss_pred CceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEcc
Q psy14257 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKL 430 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~ 430 (841)
-.++.+.+.++.+.|++........---+|+...++.... ..+++.. +.-+-.|.||.+-...+.+.+.++
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~-----s~v~~ts----~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET-----SDVEYTS----AAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc-----ccceeEE----eeEcCCceEEeccCCCceEEEEEc
Confidence 4788999999999999876665555545666555543210 0000000 001112788888888888888888
Q ss_pred CCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-CCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 431 SGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-EHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 431 ~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
.......-..........|++. ++||-..+... ...|.-.+|.- .+.+.+.. ...+..+.+.+|..+..|-
T Consensus 377 ks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~ad--d~~V~lwDLRKl~n~kt~~l-----~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFS-ENGYWLATAAD--DGSVKLWDLRKLKNFKTIQL-----DEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred CCccccccCCCCCCceeEEEec-cCceEEEEEec--CCeEEEEEehhhcccceeec-----cccccceeEEEcCCCCeEE
Confidence 6544322233334456789998 45876666554 44466666532 23333333 3444568899997655554
Q ss_pred EEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEe
Q psy14257 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 510 w~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~ 565 (841)
.+ ...=+|+.+.-....-+.+...........++.+.+...|..+....++.++-
T Consensus 449 ~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 449 IA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred ee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 44 32225555544343333343322222233566666777888776666665543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.23 E-value=16 Score=40.34 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=57.3
Q ss_pred ceeEEEc-CC-CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC----CCeEE
Q psy14257 446 PRAIALD-PR-FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK----SDSIH 519 (841)
Q Consensus 446 P~giavd-~~-~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~----~~~I~ 519 (841)
...+.+- +. .++|++++ ...-.+|+.++.+|...+.|.. ....--.-+.+|..+++||++-.. ...|+
T Consensus 237 ~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~-----G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTS-----GDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred ecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceecccc-----CceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 3344443 33 45566666 4346799999999987665543 222111347789999999998754 45899
Q ss_pred EEEcC-CCeeEEEEcCCCCCCcceEEEEec
Q psy14257 520 TVTYD-GKDHHVVLSNHDSLTHPFAIALFE 548 (841)
Q Consensus 520 ~~~~d-G~~~~~i~~~~~~l~~P~gla~~~ 548 (841)
+++++ +...+.+-... ..+ +.+++..
T Consensus 311 ~v~~~~~~~~~~LT~~~--~~~-~~~~~Sp 337 (353)
T PF00930_consen 311 RVSLDSGGEPKCLTCED--GDH-YSASFSP 337 (353)
T ss_dssp EEETTETTEEEESSTTS--STT-EEEEE-T
T ss_pred EEEeCCCCCeEeccCCC--CCc-eEEEECC
Confidence 99999 77776654332 222 4555543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1225|consensus | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.31 Score=55.46 Aligned_cols=67 Identities=30% Similarity=0.553 Sum_probs=41.5
Q ss_pred CCCCCCCCccccc--ccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccC--ceeecCCCCceEE
Q psy14257 121 ACFNGEDEMFCDE--KQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQ--DCEPSVSNNSYKC 196 (841)
Q Consensus 121 ~C~~g~de~~C~e--C~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~--~C~~~~~~g~~~C 196 (841)
-|++||.+..|++ |. . .|++.=.+..+ .|.|++||. |+.|.... | ...|+. .|. .-+|
T Consensus 268 IC~~Gf~G~dC~e~~Cp--~-~cs~~g~~~~g--~CiC~~g~~----G~dCs~~~-c--padC~g~G~Ci------~G~C 329 (525)
T KOG1225|consen 268 ICPPGFTGDDCDELVCP--V-DCSGGGVCVDG--ECICNPGYS----GKDCSIRR-C--PADCSGHGKCI------DGEC 329 (525)
T ss_pred eCCCCCcCCCCCcccCC--c-ccCCCceecCC--EeecCCCcc----cccccccc-C--CccCCCCCccc------CCce
Confidence 7899999888866 53 2 26542222334 999999997 66665432 3 133422 443 2368
Q ss_pred eecCCeeec
Q psy14257 197 TCHAGYELE 205 (841)
Q Consensus 197 ~C~~G~~l~ 205 (841)
.|.+||...
T Consensus 330 ~C~~Gy~G~ 338 (525)
T KOG1225|consen 330 LCDEGYTGE 338 (525)
T ss_pred EeCCCCcCC
Confidence 899998643
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.17 Score=43.00 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=32.4
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD 379 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld 379 (841)
.+..++..|+||++|++++.||+++...+.|..+...
T Consensus 48 ~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 48 VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4556899999999999999999999999999887653
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.03 E-value=18 Score=40.92 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=76.8
Q ss_pred CCEEEEccCCCcccccccc--CcCCCceEEEEccCCEEEEEeCCC---CeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 328 GGIEKAGMHGENRSPLVTK--NIQWPSSLVIDYNQDILYWCDSHL---NTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~--~~~~P~glavD~~~~~lYwaD~~~---~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
..+...+-||.....+... .+..|. +-+...+|....... -+|+..+++.+.+.++.+........
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~---ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P------ 243 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPA---WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAP------ 243 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccc---cCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCc------
Confidence 4566666666655555332 111111 112233333333222 35888888877777765522211110
Q ss_pred CCCCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc
Q psy14257 403 CRPEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR 480 (841)
Q Consensus 403 ~~~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~ 480 (841)
++...+.+|.++-.. .-.|++++++++....+... ...=..=.+.|++.+|+++.-....++|++++++|+..
T Consensus 244 ----~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 244 ----AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred ----cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 222334666666543 44788999998875543321 11111223556666666664333578999999999987
Q ss_pred EEEEE
Q psy14257 481 SVIVR 485 (841)
Q Consensus 481 ~~i~~ 485 (841)
+.+..
T Consensus 319 ~riT~ 323 (425)
T COG0823 319 TRLTF 323 (425)
T ss_pred eEeec
Confidence 66654
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=92.66 E-value=16 Score=38.99 Aligned_cols=242 Identities=13% Similarity=0.111 Sum_probs=125.8
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
+-.||+++.+ .-|.+...++.|...++..|. .+..+.......+|+||.. +.=|+|-. ..++.|
T Consensus 154 Vr~vavdP~n---~wf~tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~--rHpYlFs~--------gedk~V 217 (460)
T KOG0285|consen 154 VRSVAVDPGN---EWFATGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSK--RHPYLFSA--------GEDKQV 217 (460)
T ss_pred EEEEeeCCCc---eeEEecCCCceeEEEEcccCe---EEEeecchhheeeeeeecc--cCceEEEe--------cCCCee
Confidence 4566776642 266667777888888887663 3444555667899999986 55787732 223345
Q ss_pred EEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc
Q psy14257 331 EKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410 (841)
Q Consensus 331 ~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw 410 (841)
.-+++.-..+..-.-..+..-..|++.+.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPT--------------------------------------------------- 246 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPT--------------------------------------------------- 246 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEecccc---------------------------------------------------
Confidence 55555422111111112222222232221
Q ss_pred ccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC-CCCCcEEEEEeccc
Q psy14257 411 IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM-SGEHRSVIVRVDLL 489 (841)
Q Consensus 411 ~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l-dG~~~~~i~~~~~~ 489 (841)
-.+.+|-.....|.+-++..+....++.+.-.....+.+.|.++.+|-.... ..|.--++ .|....++..
T Consensus 247 --ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D---~tvrlWDl~agkt~~tlt~---- 317 (460)
T KOG0285|consen 247 --LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD---STVRLWDLRAGKTMITLTH---- 317 (460)
T ss_pred --ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC---ceEEEeeeccCceeEeeec----
Confidence 2233444444566666666554444444332233445555555555433322 23332232 2333333332
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc-CCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccC
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY-DGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~-dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~ 568 (841)
.-.....|++.+. ..+| +.+..+.|...++ .|...+- +++. -..-..|++.++.+|++-..++.|...+-.+
T Consensus 318 --hkksvral~lhP~-e~~f-ASas~dnik~w~~p~g~f~~n-lsgh--~~iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 318 --HKKSVRALCLHPK-ENLF-ASASPDNIKQWKLPEGEFLQN-LSGH--NAIINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred --ccceeeEEecCCc-hhhh-hccCCccceeccCCccchhhc-cccc--cceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 2233466777653 3444 4444566776654 3444433 2221 1122456778889999988888888888767
Q ss_pred CcceEEE
Q psy14257 569 GSDVTLI 575 (841)
Q Consensus 569 g~~~~~i 575 (841)
|-+.+.+
T Consensus 391 g~nyQ~~ 397 (460)
T KOG0285|consen 391 GHNYQRG 397 (460)
T ss_pred Ccccccc
Confidence 7665543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=19 Score=42.64 Aligned_cols=194 Identities=11% Similarity=-0.002 Sum_probs=102.6
Q ss_pred CcCCCceEEEEccCCEEEEEeC-------CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEe
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDS-------HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVE 419 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~-------~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD 419 (841)
.+..+...++.++++++.++.. ....|+.++..|..+..+... .+..+ ..+..++.|+++.
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~-~~t~P-----------sWspDG~~lw~v~ 415 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH-SLTRP-----------SWSLDADAVWVVV 415 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC-CCCCc-----------eECCCCCceEEEe
Confidence 4457788999999888877762 344788888766553332211 11111 1111224444442
Q ss_pred c-----------CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEE---ecCCCCCcEEEEE
Q psy14257 420 S-----------NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER---CSMSGEHRSVIVR 485 (841)
Q Consensus 420 ~-----------~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r---~~ldG~~~~~i~~ 485 (841)
. ..+.|++..+++...+. .--..+..+++.|+..+|.+.-. ++|+. ...++.. ..+..
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~-~~l~~ 487 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQ-YALTN 487 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCc-eeecc
Confidence 2 23345554554432221 11135788999998888877662 46766 3333333 22311
Q ss_pred ecccCCCCCC-ceeEEEeccCCEEEEEeCCC-CeEEEEEcCCCeeEEEEcCCCCCCcc-eEEEEecCeEEEEeCCCCeEE
Q psy14257 486 VDLLTSRGAW-PNGLTLDYQLTRIYWIDAKS-DSIHTVTYDGKDHHVVLSNHDSLTHP-FAIALFENHVYWTDWRTNSVI 562 (841)
Q Consensus 486 ~~~~~~~~~~-P~glalD~~~~~LYw~d~~~-~~I~~~~~dG~~~~~i~~~~~~l~~P-~gla~~~~~lY~td~~~~~i~ 562 (841)
.......+.. +..++.- .++.|++..... ..++.+.+||.....+.... +..| ..|+-..+.||++|.. .+.
T Consensus 488 ~~~l~~~l~~~~~~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n--~~~~v~~vaa~~~~iyv~~~~--g~~ 562 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRN--LSAPVVAVAASPSTVYVTDAR--AVL 562 (591)
T ss_pred cEEeecccCCccccceEe-cCCEEEEEecCCCCceEEEecCCccccccCCCC--ccCceEEEecCCceEEEEcCC--ceE
Confidence 0000023333 4566654 356677764433 46999999998766533221 2223 3455555789999854 455
Q ss_pred EEe
Q psy14257 563 RAN 565 (841)
Q Consensus 563 ~~~ 565 (841)
+..
T Consensus 563 ~l~ 565 (591)
T PRK13616 563 QLP 565 (591)
T ss_pred Eec
Confidence 444
|
|
| >KOG2397|consensus | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.18 Score=55.52 Aligned_cols=53 Identities=40% Similarity=0.601 Sum_probs=43.5
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCC---eEecCCCCCCCCCCcccCCCCCCCc
Q psy14257 10 CDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL---RCIPLAWACDGQPDCGLNDTSDEDH 68 (841)
Q Consensus 10 Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~---~Ci~~~~~Cdg~~dC~~~d~sde~~ 68 (841)
=|..-||.|||||- ....|..+.|.|.+.| .=||.+.+=||.-||= |||||..
T Consensus 60 NDd~CDC~DGsDEP----GtsACpngkF~C~N~G~~p~~i~ssrV~DGICDCC--DgSDE~~ 115 (480)
T KOG2397|consen 60 NDDSCDCLDGSDEP----GTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCC--DGSDEYL 115 (480)
T ss_pred ccccccCCCCCCCC----ccccCCCCceeeeecCCCceeeechhccCcccccc--cCCCCcc
Confidence 36677899999995 3578999999996333 4689999999999999 9998864
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=90.92 E-value=20 Score=36.50 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=80.6
Q ss_pred ceEEEEecCCCcEEEEcc-CCceEEEEe-cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec-CCCCCcEEEEEeccc
Q psy14257 413 KNLYWVESNLDQIEVAKL-SGQFRRTLI-AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS-MSGEHRSVIVRVDLL 489 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~-~G~~~~~l~-~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~-ldG~~~~~i~~~~~~ 489 (841)
++||+.+ ..+.|..++. +|+..-..- ...+..+ .++ ..+.||+.... ++|+..+ .+|.....+......
T Consensus 37 ~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~~---~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 37 GRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTSD---GSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp TEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEETT---SEEEEEETTTSCEEEEEEE-SSC
T ss_pred CEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eee--cccccccccce---eeeEecccCCcceeeeecccccc
Confidence 7888874 5678888886 676433222 2222233 233 35788888743 4899998 466665553221100
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcc--------eEEEEecCeEEEEeCCCCe
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHP--------FAIALFENHVYWTDWRTNS 560 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P--------~gla~~~~~lY~td~~~~~ 560 (841)
...+..+...+++ ++++|.... .+.|..+++. |..+-...........+ ..+.+.++.+|++.....
T Consensus 109 ~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~- 184 (238)
T PF13360_consen 109 PAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR- 184 (238)
T ss_dssp TCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-
T ss_pred ccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-
Confidence 1123344455555 678887775 6788999866 44333332211111111 223335689999886554
Q ss_pred EEEEeccCCc
Q psy14257 561 VIRANKWNGS 570 (841)
Q Consensus 561 i~~~~~~~g~ 570 (841)
+..++..+|+
T Consensus 185 ~~~~d~~tg~ 194 (238)
T PF13360_consen 185 VVAVDLATGE 194 (238)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 6666776666
|
... |
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=90.90 E-value=23 Score=37.02 Aligned_cols=236 Identities=11% Similarity=0.085 Sum_probs=127.7
Q ss_pred CCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCC-CeEEEEEecC--CccEEEEeeeeecCCCcccc
Q psy14257 324 NSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL-NTVESVRVDG--SERTVSFNLEVLGSDSRVGI 400 (841)
Q Consensus 324 ~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~-~~I~~~~ldG--~~~~~~~~~~~~~~~~~~~i 400 (841)
.+++|++..++.-.++....+.-+..|-...|+.|.++.|--.--.+ -+|+.++... ...++...+. +...-+
T Consensus 73 aSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~--gHtgyl-- 148 (343)
T KOG0286|consen 73 ASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA--GHTGYL-- 148 (343)
T ss_pred eccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec--Ccccee--
Confidence 45667777777666666666666667777777777655443222221 2344444221 1111110000 000000
Q ss_pred CCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc
Q psy14257 401 PNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR 480 (841)
Q Consensus 401 ~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~ 480 (841)
. ..-...+.-.+|-++..+.-.-+++.........+......+|++.|.++..|++-.-....+|+-++ +|.-+
T Consensus 149 -S----cC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~ 222 (343)
T KOG0286|consen 149 -S----CCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCV 222 (343)
T ss_pred -E----EEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc-Cccee
Confidence 0 00011134445556666666777765555555556677888999999889999997654456676665 34555
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCC
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTN 559 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~ 559 (841)
+.+..+ -...+.+.+-| ++.-|.+-+.....+.+|+.....-.+++....+..-.++++ ..|+|.++-....
T Consensus 223 qtF~gh------esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 223 QTFEGH------ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred Eeeccc------ccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 555432 22234555542 344455555566777777765433333333222222345666 4588888877777
Q ss_pred eEEEEeccCCcceEEEe
Q psy14257 560 SVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i~ 576 (841)
.+...+...++...++.
T Consensus 296 ~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 296 TCNVWDTLKGERVGVLA 312 (343)
T ss_pred ceeEeeccccceEEEee
Confidence 77777766666665554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=38 Score=39.23 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=37.7
Q ss_pred EEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcc-eEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 499 LTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHP-FAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 499 lalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P-~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
..+|+..+.||.+-.+.+.|..+++............ ...| .|+++.-.+. .|.....|.|+-|.+...+..|.
T Consensus 265 ~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~--s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~~i~pis 339 (493)
T PTZ00421 265 PFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS--SVEPHKGLCMMPKWS--LDTRKCEIARFYALTYHSLYTIQ 339 (493)
T ss_pred EEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc--CCCCCcceEeccccc--ccccceeeeEEEEecCCeEEEEE
Confidence 3467767777776655678888888754432222111 1122 4555533222 23334455555555544444443
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.67 E-value=8 Score=39.39 Aligned_cols=147 Identities=13% Similarity=0.068 Sum_probs=78.3
Q ss_pred EEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCce--EEEE----
Q psy14257 365 WCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF--RRTL---- 438 (841)
Q Consensus 365 waD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~--~~~l---- 438 (841)
++..+..-+.+++|+|+....+-.-...+-+.+-|.+-.. .++| -.--+|..++.|.++.+++.. .+.+
T Consensus 71 Itt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG-~~id----iaaASdR~~~~i~~y~Idp~~~~L~sitD~n 145 (364)
T COG4247 71 ITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGG-QSID----IAAASDRQNDKIVFYKIDPNPQYLESITDSN 145 (364)
T ss_pred EEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCC-eEEE----EEecccccCCeEEEEEeCCCccceeeccCCC
Confidence 3444455577778888766654322222222222222110 0111 112234556778877777643 2222
Q ss_pred --ecCCCCCceeEEEcCC--CCeEEEEecCCCCCeEEEecC----CCCCcEEEEEecccCCCCC---CceeEEEeccCCE
Q psy14257 439 --IAGDMESPRAIALDPR--FGLLFWTDWDSKAPRIERCSM----SGEHRSVIVRVDLLTSRGA---WPNGLTLDYQLTR 507 (841)
Q Consensus 439 --~~~~l~~P~giavd~~--~g~Ly~td~~~~~~~I~r~~l----dG~~~~~i~~~~~~~~~~~---~P~glalD~~~~~ 507 (841)
.+.++..|.|+++... .|-+|+--.+ ..+.|..+.+ +|.-+..++. .++ .-.|+..|-+.+.
T Consensus 146 ~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR------~fk~~tQTEG~VaDdEtG~ 218 (364)
T COG4247 146 APYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVR------QFKIPTQTEGMVADDETGF 218 (364)
T ss_pred CccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeE------eeecCCcccceeeccccce
Confidence 2345678899998644 3434433332 2466777766 2333333332 222 3468999999999
Q ss_pred EEEEeCCCCeEEEEEcC
Q psy14257 508 IYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 508 LYw~d~~~~~I~~~~~d 524 (841)
||+++. .-.|+++..+
T Consensus 219 LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 219 LYIAEE-DVAIWKYEAE 234 (364)
T ss_pred EEEeec-cceeeecccC
Confidence 999986 4578887543
|
|
| >KOG4289|consensus | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.24 Score=60.47 Aligned_cols=52 Identities=27% Similarity=0.690 Sum_probs=41.7
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc------ccccccCCCCC--CCcccCC-CCcEEecCCC
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC------DEKQCLRSDCH--HDCYNTP-EGFMCVCPRD 159 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C------~eC~~~~~~C~--~~C~~~~-g~~~C~C~~G 159 (841)
+|.+. +.|... .+.| .|.+|+.+++| ..| .++.|. ..|.+.. |+|.|.|+.|
T Consensus 1246 pC~nn-g~C~srEggYtC----eCrpg~tGehCEvs~~agrC--vpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1246 PCGNN-GRCRSREGGYTC----ECRPGFTGEHCEVSARAGRC--VPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred CCCCC-CceEEecCceeE----EecCCccccceeeecccCcc--ccceecCCCEEeecCCCceeccCCCc
Confidence 58777 889876 7889 99999998888 234 467775 3898865 8899999999
|
|
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.26 Score=33.62 Aligned_cols=24 Identities=38% Similarity=0.890 Sum_probs=20.2
Q ss_pred CCCC--CCcccCCCCcEEecCCCcee
Q psy14257 139 SDCH--HDCYNTPEGFMCVCPRDMYL 162 (841)
Q Consensus 139 ~~C~--~~C~~~~g~~~C~C~~Gy~l 162 (841)
..|. ..|.++.++|.|.|+.||..
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcc
Confidence 4565 58999999999999999974
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.33 E-value=36 Score=38.37 Aligned_cols=216 Identities=13% Similarity=0.137 Sum_probs=106.6
Q ss_pred CccceEEeeecCceeEEEeeecCCCC---CCCCCCEEEEccCCCccc-cccccCcCCC---ceEEEEccCCEEEEEeCC-
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPS---NSSDGGIEKAGMHGENRS-PLVTKNIQWP---SSLVIDYNQDILYWCDSH- 369 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~---~~~~~~I~~~~~dG~~~~-~l~~~~~~~P---~glavD~~~~~lYwaD~~- 369 (841)
.+.+-.+-|..+.-.+|.+.+..... .....+|++..+...... .++-..-..+ -++.++.+++.|++.-..
T Consensus 169 ~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 169 NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 34333366766644455555544211 011346777777544333 2333322333 377888888888875442
Q ss_pred -C-CeEEEEEecCC-----ccEEEEeeeeecCCCccccCCCCCCccccccceEEE-Eec--CCCcEEEEccCCce----E
Q psy14257 370 -L-NTVESVRVDGS-----ERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYW-VES--NLDQIEVAKLSGQF----R 435 (841)
Q Consensus 370 -~-~~I~~~~ldG~-----~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~-tD~--~~~~I~v~~~~G~~----~ 435 (841)
. ..|+.++++.. ..+.+.... +.. .-.+++.++.+|+ |+. .+++|..++++... .
T Consensus 249 ~~~s~v~~~d~~~~~~~~~~~~~l~~~~----~~~-------~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~ 317 (414)
T PF02897_consen 249 TSESEVYLLDLDDGGSPDAKPKLLSPRE----DGV-------EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW 317 (414)
T ss_dssp SSEEEEEEEECCCTTTSS-SEEEEEESS----SS--------EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE
T ss_pred ccCCeEEEEeccccCCCcCCcEEEeCCC----Cce-------EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccce
Confidence 3 45788888764 223322100 000 0124455688886 443 35688888887543 3
Q ss_pred EEEecCCC-CCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 436 RTLIAGDM-ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 436 ~~l~~~~l-~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
.+++...- ....++.+. +++|++........+|...+++ +.....+.. .....-.++.-++.+..+++.-.
T Consensus 318 ~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~-----p~~g~v~~~~~~~~~~~~~~~~s 390 (414)
T PF02897_consen 318 TVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPL-----PEAGSVSGVSGDFDSDELRFSYS 390 (414)
T ss_dssp EEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEES-----SSSSEEEEEES-TT-SEEEEEEE
T ss_pred eEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecC-----CcceEEeccCCCCCCCEEEEEEe
Confidence 34444321 235566664 5788888755446789999988 433333321 12222234444555555555432
Q ss_pred C---CCeEEEEEcCCCeeEEE
Q psy14257 514 K---SDSIHTVTYDGKDHHVV 531 (841)
Q Consensus 514 ~---~~~I~~~~~dG~~~~~i 531 (841)
. -..|+.+++.....+.+
T Consensus 391 s~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 391 SFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp ETTEEEEEEEEETTTTCEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEE
Confidence 1 13566666655544433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=90.17 E-value=5.5 Score=42.49 Aligned_cols=216 Identities=13% Similarity=0.164 Sum_probs=120.4
Q ss_pred CCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeee-cCCC---ccc
Q psy14257 324 NSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL-GSDS---RVG 399 (841)
Q Consensus 324 ~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~-~~~~---~~~ 399 (841)
.+.+|.|..++|.-..-...+...-+.-.||.++. +..+++.|-+ +|....++|....+++.-..+ +-+. .--
T Consensus 85 Gs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDK--tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~ 161 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDK--TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSV 161 (433)
T ss_pred cccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCc--ceeeeeccCCcceeeecccccccccccccccc
Confidence 34577888888876655555556667788999997 6666666654 455555555444443221111 0000 000
Q ss_pred cCCCC------------CC-cccc------------ccceEEEEecCCCcEEEEccCCc-eEEEEecCCCCCceeEEEcC
Q psy14257 400 IPNCR------------PE-DNLW------------IGKNLYWVESNLDQIEVAKLSGQ-FRRTLIAGDMESPRAIALDP 453 (841)
Q Consensus 400 i~~~~------------~~-avdw------------~~~~LY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~giavd~ 453 (841)
.++|+ |+ .+.| +.-.|..+-...+.|..+|+.-. -.+.++. . .++++|+.+|
T Consensus 162 FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~-mRTN~IswnP 239 (433)
T KOG0268|consen 162 FATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-T-MRTNTICWNP 239 (433)
T ss_pred ccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-e-ccccceecCc
Confidence 00111 10 1112 22334444444556777766432 2222221 1 4789999999
Q ss_pred CCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEc
Q psy14257 454 RFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 454 ~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~ 533 (841)
.++.|++... ...+|..+|.--.+..-+.. ........+.+. ..|.=|++-++...|..+..+...-+.++.
T Consensus 240 -eafnF~~a~E--D~nlY~~DmR~l~~p~~v~~----dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 240 -EAFNFVAANE--DHNLYTYDMRNLSRPLNVHK----DHVSAVMDVDFS-PTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred -cccceeeccc--cccceehhhhhhcccchhhc----ccceeEEEeccC-CCcchhccccccceEEEeecCCCcchhhhh
Confidence 7999988754 78899999864333222210 111122223333 256777888888899999888765555554
Q ss_pred CCCCCCcceEEEEecCeEEE
Q psy14257 534 NHDSLTHPFAIALFENHVYW 553 (841)
Q Consensus 534 ~~~~l~~P~gla~~~~~lY~ 553 (841)
. ...++.+++...-+.-|+
T Consensus 312 t-kRMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 312 T-KRMQHVFCVKYSMDSKYI 330 (433)
T ss_pred H-hhhheeeEEEEeccccEE
Confidence 3 246788888886554444
|
|
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.29 Score=33.96 Aligned_cols=23 Identities=30% Similarity=0.813 Sum_probs=19.2
Q ss_pred CCCC--CCcccCCCCcEEecCCCce
Q psy14257 139 SDCH--HDCYNTPEGFMCVCPRDMY 161 (841)
Q Consensus 139 ~~C~--~~C~~~~g~~~C~C~~Gy~ 161 (841)
..|. +.|.++.++|.|.|++||.
T Consensus 9 ~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 9 NPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCc
Confidence 3563 4799999999999999996
|
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. |
| >KOG3509|consensus | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.87 Score=55.26 Aligned_cols=65 Identities=32% Similarity=0.694 Sum_probs=55.0
Q ss_pred eccCccCcCCcCCCCCCCCCCCCCCC--CCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 3 CIIAYWKCDGDEDCKDGSDELAEHCQ--DRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 3 Ci~~~~~Cdg~~dC~dgsde~~~~C~--~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
|....|.||...+|.+++++..+++. ...|.+.+++|.+..+|.+.+..|+|.++|. |+++|..|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~--~~~~~~~~ 110 (964)
T KOG3509|consen 44 CVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDRLRCNPQSFQCDGTNDCK--DGSDEVGC 110 (964)
T ss_pred ccCchhhhccccccCCCCCcCCccccccccccCCcccccccchhcCCccccccCCCCCC--ccchhccc
Confidence 45567899999999999988733332 3668999999997779999999999999999 99999886
|
|
| >KOG0994|consensus | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.3 Score=53.40 Aligned_cols=78 Identities=21% Similarity=0.522 Sum_probs=42.2
Q ss_pred CccCCCCCCC----CC-CCCCCCCcccCCCCCeEecC-----CCCCCCCCCCCCCCC-------CcccccccccCCCCCC
Q psy14257 81 NCTHSGNRTI----SA-PACEPHEFDCQDVLRTCIPK-----ALVCDGEPACFNGED-------EMFCDEKQCLRSDCHH 143 (841)
Q Consensus 81 ~C~~c~~~~~----c~-~~C~~~~~~C~~~~~~Ci~~-----~~~Cdg~~~C~~g~d-------e~~C~eC~~~~~~C~~ 143 (841)
.|..|.++.+ |. -.|..+.-.|...+|.||.- .+.|| .|.+||= +..|..|.+..++-+.
T Consensus 842 qCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~Cd---rCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg 918 (1758)
T KOG0994|consen 842 QCNQCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQDSTTGHSCD---RCLDGYYGDPRLGSGIGCRPCPCPDGPASG 918 (1758)
T ss_pred hccccCCCccCCCcCccccccCcccccCccccccccccccccccchh---hhhccccCCcccCCCCCCCCCCCCCCCccc
Confidence 4555555543 31 23444445565555666653 56675 6888872 2337666554433221
Q ss_pred -----CcccCC--CCcEEecCCCce
Q psy14257 144 -----DCYNTP--EGFMCVCPRDMY 161 (841)
Q Consensus 144 -----~C~~~~--g~~~C~C~~Gy~ 161 (841)
.|+..+ ....|.|.+||.
T Consensus 919 ~~~A~sC~~d~~t~~ivC~C~~GY~ 943 (1758)
T KOG0994|consen 919 RQHADSCYLDTRTQQIVCHCQEGYS 943 (1758)
T ss_pred hhccccccccccccceeeecccCcc
Confidence 454332 345788888886
|
|
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.41 Score=33.32 Aligned_cols=29 Identities=48% Similarity=1.114 Sum_probs=19.7
Q ss_pred CCccC--ceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 179 GTCSQ--DCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 179 ~~Cs~--~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
+.|.. .|.++ .++|.|.|.+||.. |+..|
T Consensus 6 ~~C~~nA~C~~~--~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 6 GGCHPNATCTNT--GGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp GGS-TTCEEEE---TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCcEeecC--CCCEEeECCCCCcc--CCcCC
Confidence 45533 78898 89999999999984 45544
|
; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A. |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=88.47 E-value=32 Score=40.66 Aligned_cols=179 Identities=12% Similarity=0.052 Sum_probs=107.1
Q ss_pred cCCEEEEEeCCC------CeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC-----CcEEE
Q psy14257 359 NQDILYWCDSHL------NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-----DQIEV 427 (841)
Q Consensus 359 ~~~~lYwaD~~~------~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-----~~I~v 427 (841)
.++.||++-..+ ..++++++....-..+.....- .. ..++...+|.||+.-... ..|++
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~--R~--------~~~v~~l~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK--RS--------DFGVAVLDGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc--cc--------cceeEEECCEEEEEeccccccccccEEE
Confidence 468999986544 5677777776654433221110 11 123444569999886543 36888
Q ss_pred EccCCceEEEEecCCCCCc-eeEEEcCCCCeEEEEecCC----CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEe
Q psy14257 428 AKLSGQFRRTLIAGDMESP-RAIALDPRFGLLFWTDWDS----KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502 (841)
Q Consensus 428 ~~~~G~~~~~l~~~~l~~P-~giavd~~~g~Ly~td~~~----~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD 502 (841)
++.....-..+.. +..+ .+.++-..+|+||..-... .-..+++++..-...+.+... ..-..-.|+++
T Consensus 401 YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M----~~~R~~~g~a~- 473 (571)
T KOG4441|consen 401 YDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM----NTRRSGFGVAV- 473 (571)
T ss_pred ecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc----ccccccceEEE-
Confidence 8887765444332 2222 2444444689999985321 125788888876655555431 11122234554
Q ss_pred ccCCEEEEEeCC-----CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeC
Q psy14257 503 YQLTRIYWIDAK-----SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 503 ~~~~~LYw~d~~-----~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~ 556 (841)
.+++||++-.. ...|+++++....-..+.... .-....|+++.++.||+.-.
T Consensus 474 -~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 474 -LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-SPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred -ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-cccccccEEEECCEEEEEec
Confidence 58999997543 346899999887776663222 12344688999999999753
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=49 Score=37.05 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=61.3
Q ss_pred CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC
Q psy14257 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~ 534 (841)
++.||+.... +.++..++.... ++-. ..+..+..++++ +++||+.+. .+.|..++...... +-..
T Consensus 256 ~~~vy~~~~~---g~l~ald~~tG~--~~W~-----~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~--~W~~ 320 (394)
T PRK11138 256 GGVVYALAYN---GNLVALDLRSGQ--IVWK-----REYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVE--LWSQ 320 (394)
T ss_pred CCEEEEEEcC---CeEEEEECCCCC--EEEe-----ecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcE--EEcc
Confidence 5789988753 678888774222 1222 123334445554 689999875 57899999864422 2111
Q ss_pred CCCC-CcceEEEEecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 535 HDSL-THPFAIALFENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 535 ~~~l-~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
.... ....+.++.+++||+.+. .+.|+.++..+|+..
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v~~~-~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVVGDS-EGYLHWINREDGRFV 358 (394)
T ss_pred cccCCCcccCCEEECCEEEEEeC-CCEEEEEECCCCCEE
Confidence 1000 111234567899999875 467888888887643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=88.10 E-value=47 Score=36.80 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEc
Q psy14257 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLS 533 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~ 533 (841)
++.+|.+... +.++..++.... .+.. .....+..++++ +++||+.+. .+.|..++.+ |..+-....
T Consensus 241 ~~~vy~~~~~---g~l~a~d~~tG~--~~W~-----~~~~~~~~p~~~--~~~vyv~~~-~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 241 GGQVYAVSYQ---GRVAALDLRSGR--VLWK-----RDASSYQGPAVD--DNRLYVTDA-DGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred CCEEEEEEcC---CEEEEEECCCCc--EEEe-----eccCCccCceEe--CCEEEEECC-CCeEEEEECCCCcEEEcccc
Confidence 5789998754 678888874222 2222 112234455554 689998874 6789999985 432211101
Q ss_pred -CCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 534 -NHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 534 -~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
...... ..++.+++||+.+ .++.|+.++..+|+...
T Consensus 308 ~~~~~~s---sp~i~g~~l~~~~-~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 308 LKYRQLT---APAVVGGYLVVGD-FEGYLHWLSREDGSFVA 344 (377)
T ss_pred ccCCccc---cCEEECCEEEEEe-CCCEEEEEECCCCCEEE
Confidence 011112 2345788999987 45788888887776554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=50 Score=36.99 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=71.2
Q ss_pred cceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC
Q psy14257 412 GKNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
++.||++.. .+.+...++. |+.+ -...+..+..++++ ++.||+.+. .++|+.++...... +......
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~---W~~~~~~~~~~~~~--~~~vy~~~~---~g~l~ald~~tG~~--~W~~~~~- 323 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIV---WKREYGSVNDFAVD--GGRIYLVDQ---NDRVYALDTRGGVE--LWSQSDL- 323 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEE---EeecCCCccCcEEE--CCEEEEEcC---CCeEEEEECCCCcE--EEccccc-
Confidence 478888764 4677777764 4322 11123334455554 579999874 46888888753221 1110000
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEE
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~ 564 (841)
... .....++ .+++||+.+. .+.|+.++.+ |..+...-.... .......+.+++||+... .+.|+.+
T Consensus 324 ~~~-~~~sp~v--~~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~~~~~l~v~t~-~G~l~~~ 391 (394)
T PRK11138 324 LHR-LLTAPVL--YNGYLVVGDS-EGYLHWINREDGRFVAQQKVDSS--GFLSEPVVADDKLLIQAR-DGTVYAI 391 (394)
T ss_pred CCC-cccCCEE--ECCEEEEEeC-CCEEEEEECCCCCEEEEEEcCCC--cceeCCEEECCEEEEEeC-CceEEEE
Confidence 011 1122333 2689998875 5788888874 433322211111 111233467899999965 4555544
|
|
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Probab=87.83 E-value=0.52 Score=32.29 Aligned_cols=25 Identities=40% Similarity=1.018 Sum_probs=20.8
Q ss_pred CCccC-ceeecCCCCceEEeecCCeeec
Q psy14257 179 GTCSQ-DCEPSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 179 ~~Cs~-~C~~~~~~g~~~C~C~~G~~l~ 205 (841)
..|.+ .|.+. .++|.|.|++||.+.
T Consensus 6 ~~C~~~~C~~~--~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNGTCINT--PGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCCEEECC--CCCeEeECCCCCccC
Confidence 45666 89988 899999999999763
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.9 Score=30.64 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=28.7
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALD 452 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd 452 (841)
+.||+++...+.|.++++.......-+.. -..|++|+++
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 78999999999999998854433333333 3689999874
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1217|consensus | Back alignment and domain information |
|---|
Probab=86.65 E-value=3.4 Score=47.44 Aligned_cols=101 Identities=27% Similarity=0.465 Sum_probs=68.1
Q ss_pred CcccCCCCCeEecC----CCCCCCCCCCCCCCCCccc----ccccccCCCCCCCccc-CCCCcEEecCCCceec--CCCC
Q psy14257 99 EFDCQDVLRTCIPK----ALVCDGEPACFNGEDEMFC----DEKQCLRSDCHHDCYN-TPEGFMCVCPRDMYLQ--PDLI 167 (841)
Q Consensus 99 ~~~C~~~~~~Ci~~----~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~~~C~~-~~g~~~C~C~~Gy~l~--~d~~ 167 (841)
...|.++ ..|... .+.| .|..++....| ++|..........|.+ +.++|.|.|+.+|.+. .++.
T Consensus 321 ~~~c~~g-~~C~~~~~~~~~~C----~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~~~~~~~~ 395 (487)
T KOG1217|consen 321 GGPCANG-GTCNTLGSFGGFRC----ACGPGFTGRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAGKANGDGV 395 (487)
T ss_pred CCcCCCC-cccccCCCCCCCCc----CCCCCCCCCccccCCccccCCccccCCEeccCCCCCeEecCCCccccCCccccc
Confidence 3446664 566221 4457 78888777778 2677543333558888 7999999999999863 5778
Q ss_pred ccccccccCCCCCccCceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 168 TCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 168 ~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
.|.+.++|.. ...|.+. .+++.|. .. + ..... .|.+.
T Consensus 396 ~~~~~~~c~~----~~~c~~~--~~~~~c~-~~-~-~~~~~-~~~~~ 432 (487)
T KOG1217|consen 396 GCEDIDECSG----CGDCVNG--PGGGACT-PP-G-LVSPG-TCDDI 432 (487)
T ss_pred cccccccccC----Ccceecc--CCCCccc-cC-c-ccCCc-ceecc
Confidence 8888888854 3356777 7888888 76 4 33323 55555
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.19 E-value=48 Score=34.88 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=70.2
Q ss_pred ceEEEEecCCCcEEEEccCCce-EEEEecCCCCCceeE---EEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQF-RRTLIAGDMESPRAI---ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~gi---avd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
++.|.++...+ +...+.++.. ..++..-....|.++ .|. ..+.|+.|....-+.|-..+.-+.....-..
T Consensus 224 nr~y~vvy~eg-vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~--- 297 (370)
T COG5276 224 NRAYLVVYDEG-VLIVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLD--- 297 (370)
T ss_pred CeeEEEEcccc-eEEEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhcccc---
Confidence 77888886644 4445555544 333333344567666 553 5699999965323344444433322211111
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE-cCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT-YDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSV 561 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~-~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i 561 (841)
.......||.+ .++.+|++|...+.|.-+. +.-.+. ..+..++..-..+.+....+|.+||..+..
T Consensus 298 --t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~m~~---~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~ 364 (370)
T COG5276 298 --TAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSMMDK---RPGRPTIGQSCDVSVDTQIIYSTDYNGGLS 364 (370)
T ss_pred --CCCccccceEE--ecCeeEeccCCceEEEeCCChhhccc---ccCcceEeeecceEEEeeEEEEeecCCCEE
Confidence 22234567776 4789999997655443221 111000 001011122345566556999999876543
|
|
| >PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium | Back alignment and domain information |
|---|
Probab=86.18 E-value=0.2 Score=48.14 Aligned_cols=98 Identities=27% Similarity=0.652 Sum_probs=55.6
Q ss_pred ccCCCCCeEecC-------CCCCCCCCCCCCCCC--Cccc--ccccccCCCCC-CCcccCC---CCcEEecCCCceecCC
Q psy14257 101 DCQDVLRTCIPK-------ALVCDGEPACFNGED--EMFC--DEKQCLRSDCH-HDCYNTP---EGFMCVCPRDMYLQPD 165 (841)
Q Consensus 101 ~C~~~~~~Ci~~-------~~~Cdg~~~C~~g~d--e~~C--~eC~~~~~~C~-~~C~~~~---g~~~C~C~~Gy~l~~d 165 (841)
.|.+. ..|+.. .+.| +|.+||. +..| ++|. +..|. .+|+-.+ ....|+|.-|+. ..|
T Consensus 51 ~Cgdy-a~C~~~~~~~~~~~~~C----~C~~gY~~~~~vCvp~~C~--~~~Cg~GKCI~d~~~~~~~~CSC~IGkV-~~d 122 (197)
T PF06247_consen 51 PCGDY-AKCINQANKGEERAYKC----DCINGYILKQGVCVPNKCN--NKDCGSGKCILDPDNPNNPTCSCNIGKV-PDD 122 (197)
T ss_dssp EEETT-EEEEE-SSTTSSTSEEE----EE-TTEEESSSSEEEGGGS--S---TTEEEEEEEGGGSEEEEEE-TEEE-TTT
T ss_pred cccch-hhhhcCCCcccceeEEE----ecccCceeeCCeEchhhcC--ceecCCCeEEecCCCCCCceeEeeeceE-ecc
Confidence 46665 677664 4568 8999995 3347 5565 34553 3676433 345999999999 456
Q ss_pred CCcccc--ccccCCCCCc--cCceeecCCCCceEEeecCCeeecCCCCc
Q psy14257 166 LITCSY--LHPCEAWGTC--SQDCEPSVSNNSYKCTCHAGYELEPDMFT 210 (841)
Q Consensus 166 ~~~C~~--~~eC~~~~~C--s~~C~~~~~~g~~~C~C~~G~~l~~d~~~ 210 (841)
...|.. ..+|+. -| ...|... .+-|+|.|.+|+.....+..
T Consensus 123 n~kCtk~G~T~C~L--KCk~nE~CK~~--~~~Y~C~~~~~~~~~~~~~~ 167 (197)
T PF06247_consen 123 NKKCTKTGETKCSL--KCKENEECKLV--DGYYKCVCKEGFPGDGEGEG 167 (197)
T ss_dssp TTESEEEE----------TTTEEEEEE--TTEEEEEE-TT-EEETTT--
T ss_pred CCcccCCCccceee--ecCCCcceeee--CcEEEeecCCCCCCCCCccc
Confidence 677764 334532 23 2378888 88999999999988765543
|
Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A. |
| >PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet | Back alignment and domain information |
|---|
Probab=86.08 E-value=0.79 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCCccccccCCCCceeeeCCCCceeecC
Q psy14257 600 GNCSHLCLIGMNGTYKCQCPHVMKLMSD 627 (841)
Q Consensus 600 g~Cs~lC~~~~~~~~~C~Cp~g~~l~~d 627 (841)
..|.+.|-++.. ..|.||+||.|..+
T Consensus 6 t~CpA~CDpn~~--~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 6 TECPADCDPNSP--GQCFCPEGYILDEG 31 (34)
T ss_pred ccCCCccCCCCC--CceeCCCceEecCC
Confidence 668888887654 48999999998764
|
Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane |
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Probab=85.89 E-value=0.34 Score=32.76 Aligned_cols=22 Identities=32% Similarity=1.038 Sum_probs=19.2
Q ss_pred CCCC--CcccCC-CCcEEecCCCce
Q psy14257 140 DCHH--DCYNTP-EGFMCVCPRDMY 161 (841)
Q Consensus 140 ~C~~--~C~~~~-g~~~C~C~~Gy~ 161 (841)
+|.+ .|++.. ++|.|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 6765 889888 999999999997
|
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=85.62 E-value=67 Score=36.00 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=37.7
Q ss_pred ceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEee--CCCCCcceeEEeec
Q psy14257 671 PNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVD--AGISHPSGLAIDWI 748 (841)
Q Consensus 671 ~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~p~glAvD~~ 748 (841)
++.|......+.||++.-..+.|+..++.-...-.|+..|+..=.- .+ .....+. .-.+.|+=|.+.|-
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~---~~------~~~~~v~g~~l~GgPqMvqlS~D 384 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI---RK------GDHPVVKGKRLRGGPQMVQLSLD 384 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT---T-------B--TTS------S----EEE-TT
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe---cc------CCCccccccccCCCCCeEEEccC
Confidence 5677788889999999999999999998765523333222211000 00 0000000 11246888888899
Q ss_pred CCcEEEEec
Q psy14257 749 AQNMFIAVS 757 (841)
Q Consensus 749 ~~~LYw~~~ 757 (841)
+++||||+|
T Consensus 385 GkRlYvTnS 393 (461)
T PF05694_consen 385 GKRLYVTNS 393 (461)
T ss_dssp SSEEEEE--
T ss_pred CeEEEEEee
Confidence 999999954
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0994|consensus | Back alignment and domain information |
|---|
Probab=85.45 E-value=3.2 Score=50.35 Aligned_cols=86 Identities=29% Similarity=0.647 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCCCCCCcc-cccccccC--CCCCC------CcccCCCCcEE-ecCCCceecC---CCCccccccccCCCC
Q psy14257 113 ALVCDGEPACFNGEDEMF-CDEKQCLR--SDCHH------DCYNTPEGFMC-VCPRDMYLQP---DLITCSYLHPCEAWG 179 (841)
Q Consensus 113 ~~~Cdg~~~C~~g~de~~-C~eC~~~~--~~C~~------~C~~~~g~~~C-~C~~Gy~l~~---d~~~C~~~~eC~~~~ 179 (841)
...|| .|.+|+.+.+ |..|+++. ..|.. .|.+..+|+.| +|..||...| .+..|..- +|. .+
T Consensus 840 grqCn---qCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPC-pCP-~g 914 (1758)
T KOG0994|consen 840 GRQCN---QCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPC-PCP-DG 914 (1758)
T ss_pred hhhcc---ccCCCccCCCcCccccccCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCCC-CCC-CC
Confidence 34575 7999988766 65555432 24432 57778889999 6999998553 44555532 231 12
Q ss_pred CccC-----cee--ecCCCCceEEeecCCeeec
Q psy14257 180 TCSQ-----DCE--PSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 180 ~Cs~-----~C~--~~~~~g~~~C~C~~G~~l~ 205 (841)
+-++ .|. +. .....|.|.+||...
T Consensus 915 p~Sg~~~A~sC~~d~~--t~~ivC~C~~GY~G~ 945 (1758)
T KOG0994|consen 915 PASGRQHADSCYLDTR--TQQIVCHCQEGYSGS 945 (1758)
T ss_pred Cccchhcccccccccc--ccceeeecccCcccc
Confidence 2111 221 22 345678888888743
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=85.40 E-value=15 Score=39.27 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=83.9
Q ss_pred ceeEEee--cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeee
Q psy14257 636 SQFIIFS--RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713 (841)
Q Consensus 636 ~~~l~~~--~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 713 (841)
+.+||.+ .+..|..+++....+..-+. ......+|.++| +...|.+-.+...+|..++..-.
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~----------- 262 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS----------- 262 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceee----eeccccceecCc-cccceeeccccccceehhhhhhc-----------
Confidence 4445443 34567777775543322111 113456899999 89999998888999887765422
Q ss_pred ecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEc-CCCCCCCcCCCce
Q psy14257 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILS-NESNDTSTLSKIS 792 (841)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~-~~~~~~~~l~~p~ 792 (841)
+| ..+-......+..+++.+.+ .=|++ ..-..+|+.+..+..+.+-+.. . .|.+..
T Consensus 263 --~p------------~~v~~dhvsAV~dVdfsptG-~Efvs--gsyDksIRIf~~~~~~SRdiYhtk------RMq~V~ 319 (433)
T KOG0268|consen 263 --RP------------LNVHKDHVSAVMDVDFSPTG-QEFVS--GSYDKSIRIFPVNHGHSRDIYHTK------RMQHVF 319 (433)
T ss_pred --cc------------chhhcccceeEEEeccCCCc-chhcc--ccccceEEEeecCCCcchhhhhHh------hhheee
Confidence 01 11122233445667777765 56777 4567889999998776555543 2 277777
Q ss_pred EEEEeCCCCeEEEEecCCCcceEEEEe
Q psy14257 793 SIAVWPVKGKMFWSNVTKQVVTIEMAF 819 (841)
Q Consensus 793 ~iavd~~~g~lyw~d~~~~~~~I~~~~ 819 (841)
++.-.-...|++=-....+ .|+++++
T Consensus 320 ~Vk~S~Dskyi~SGSdd~n-vRlWka~ 345 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGN-VRLWKAK 345 (433)
T ss_pred EEEEeccccEEEecCCCcc-eeeeecc
Confidence 7776655445442221111 4555554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.06 E-value=66 Score=35.43 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=55.1
Q ss_pred CCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEe-ccCCEEEEEeCCCC--eEEEEEcCCCeeEEEEcCCCCCCcceE
Q psy14257 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD-YQLTRIYWIDAKSD--SIHTVTYDGKDHHVVLSNHDSLTHPFA 543 (841)
Q Consensus 467 ~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD-~~~~~LYw~d~~~~--~I~~~~~dG~~~~~i~~~~~~l~~P~g 543 (841)
...|..++......+++... ....-+.....+.+- ..+..++|.-...+ .|+.++.+|...+.+-.+.-.+....+
T Consensus 209 ~~~l~~~d~~tg~~~~~~~e-~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~ 287 (353)
T PF00930_consen 209 RLDLVLCDASTGETRVVLEE-TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILG 287 (353)
T ss_dssp EEEEEEEEECTTTCEEEEEE-ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEE
T ss_pred EEEEEEEECCCCceeEEEEe-cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccce
Confidence 34566666644333433332 111223333344432 45566666554444 889999999886654433322223334
Q ss_pred EEEecCeEEEEeCC----CCeEEEEeccCCcceE
Q psy14257 544 IALFENHVYWTDWR----TNSVIRANKWNGSDVT 573 (841)
Q Consensus 544 la~~~~~lY~td~~----~~~i~~~~~~~g~~~~ 573 (841)
+.-.++.||++-.. ...|++++...+...+
T Consensus 288 ~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 288 WDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp EECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred EcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 44445789988655 3467777765233333
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.78 E-value=77 Score=37.43 Aligned_cols=179 Identities=10% Similarity=0.082 Sum_probs=91.5
Q ss_pred cCCEEEEEeCC------CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC-----CcEEE
Q psy14257 359 NQDILYWCDSH------LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-----DQIEV 427 (841)
Q Consensus 359 ~~~~lYwaD~~------~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-----~~I~v 427 (841)
.++.||++-.. ...++++++....-..+.. .+.+.. ..++...+++||+.-... ..+++
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-------m~~~R~---~~~~~~~~g~IYviGG~~~~~~~~sve~ 371 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-------MIKNRC---RFSLAVIDDTIYAIGGQNGTNVERTIEC 371 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-------Ccchhh---ceeEEEECCEEEEECCcCCCCCCceEEE
Confidence 46899998542 2346666665543222211 110000 012333458999986542 35778
Q ss_pred EccCCceEEEEecCCCCCce---eEEEcCCCCeEEEEecCCC---------------------CCeEEEecCCCCCcEEE
Q psy14257 428 AKLSGQFRRTLIAGDMESPR---AIALDPRFGLLFWTDWDSK---------------------APRIERCSMSGEHRSVI 483 (841)
Q Consensus 428 ~~~~G~~~~~l~~~~l~~P~---giavd~~~g~Ly~td~~~~---------------------~~~I~r~~ldG~~~~~i 483 (841)
+++....-..+ ..+..|+ ++++ .+|.||+.-.... ...+++.++.-...+.+
T Consensus 372 Ydp~~~~W~~~--~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 372 YTMGDDKWKML--PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred EECCCCeEEEC--CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 88765433322 1333333 2232 3689998742110 24577777754433333
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCC------CeEEEEEcCC-CeeEEEEcCCCCCCcceEEEEecCeEEEEeC
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS------DSIHTVTYDG-KDHHVVLSNHDSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~------~~I~~~~~dG-~~~~~i~~~~~~l~~P~gla~~~~~lY~td~ 556 (841)
... ..-....++++ .+++||+.-... ..++++|++. ..-+.+..-.. -..-.|+++.+|+||+.-.
T Consensus 448 ~~m----~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~~~~~iyv~Gg 520 (557)
T PHA02713 448 PNF----WTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHTILHDNTIMMLHC 520 (557)
T ss_pred CCC----CcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-ccccceeEEECCEEEEEee
Confidence 221 01111224443 368999985422 3578899886 33333322111 1123688889999999754
Q ss_pred CC
Q psy14257 557 RT 558 (841)
Q Consensus 557 ~~ 558 (841)
..
T Consensus 521 ~~ 522 (557)
T PHA02713 521 YE 522 (557)
T ss_pred ec
Confidence 33
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=84.46 E-value=74 Score=35.52 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=52.4
Q ss_pred CccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC
Q psy14257 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG 477 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG 477 (841)
++|||.+..=|.+-...+.|.|+.++++....-+.+.-....+|-.+|. |.|.-+-.....-+|+...-++
T Consensus 322 lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 322 LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred cceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCc
Confidence 5899999999999988899999999887654333335567789999986 6666665554466777755443
|
|
| >KOG2397|consensus | Back alignment and domain information |
|---|
Probab=84.19 E-value=0.93 Score=50.17 Aligned_cols=70 Identities=34% Similarity=0.562 Sum_probs=50.2
Q ss_pred CCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccCCCCC---eEe
Q psy14257 34 ESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLR---TCI 110 (841)
Q Consensus 34 ~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~~~~~C~~~~~---~Ci 110 (841)
...|+|.+...=|+...+=|..-||. |||||-+ ...|+.+.|.|.+. | .=|
T Consensus 42 s~~~~CLdgs~~i~f~qlNDd~CDC~--DGsDEPG-----------------------tsACpngkF~C~N~-G~~p~~i 95 (480)
T KOG2397|consen 42 SSMFKCLDGSKTISFSQLNDDSCDCL--DGSDEPG-----------------------TSACPNGKFYCVNQ-GHQPKYI 95 (480)
T ss_pred ccceeeccCCcccCHHHhccccccCC--CCCCCCc-----------------------cccCCCCceeeeec-CCCceee
Confidence 34788886677788888888888888 7777732 13466778888874 4 345
Q ss_pred cCCCCCCCCCCCCCCCCCc
Q psy14257 111 PKALVCDGEPACFNGEDEM 129 (841)
Q Consensus 111 ~~~~~Cdg~~~C~~g~de~ 129 (841)
+.+.+=||..||=+|+||.
T Consensus 96 ~ssrV~DGICDCCDgSDE~ 114 (480)
T KOG2397|consen 96 PSSRVNDGICDCCDGSDEY 114 (480)
T ss_pred echhccCcccccccCCCCc
Confidence 6666677777999999875
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=84.17 E-value=4.9 Score=28.51 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=28.1
Q ss_pred cCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE
Q psy14257 504 QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546 (841)
Q Consensus 504 ~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~ 546 (841)
.+++||+++...+.|..+++.......-+.. ..+|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v---g~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV---GGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC---CCCCceEEe
Confidence 5789999999999999999854433222222 357888875
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=83.46 E-value=42 Score=37.25 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=59.9
Q ss_pred CCeEEEEecCCCCCeEEEecC-CCCCcEEEEEecccCCC-CCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEE
Q psy14257 455 FGLLFWTDWDSKAPRIERCSM-SGEHRSVIVRVDLLTSR-GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVV 531 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~l-dG~~~~~i~~~~~~~~~-~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i 531 (841)
+|.||+.++. .+++..+. +|+..-.... .. +.+.....+ .++.+|+.. ..+.+..++.+ |..+=..
T Consensus 111 ~G~i~~g~~~---g~~y~ld~~~G~~~W~~~~-----~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 111 DGKIYVGSWD---GKLYALDASTGTLVWSRNV-----GGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTY 179 (370)
T ss_pred CCeEEEeccc---ceEEEEECCCCcEEEEEec-----CCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEE
Confidence 5778888875 37777777 5655444332 12 112222222 357777764 35678888877 6554332
Q ss_pred EcCC-CCCCcceEEEEecCeEEEEeCC-CCeEEEEeccCCcce
Q psy14257 532 LSNH-DSLTHPFAIALFENHVYWTDWR-TNSVIRANKWNGSDV 572 (841)
Q Consensus 532 ~~~~-~~l~~P~gla~~~~~lY~td~~-~~~i~~~~~~~g~~~ 572 (841)
-... ..+......++.++.+|++... +..+...+..+|...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 180 ETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred ecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 2211 0122222333778899998653 446777777777644
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=83.21 E-value=58 Score=36.43 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=36.6
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC-CcEEEEEecccC-------------CCCCCceeEEEeccCCEEEE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE-HRSVIVRVDLLT-------------SRGAWPNGLTLDYQLTRIYW 510 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~-~~~~i~~~~~~~-------------~~~~~P~glalD~~~~~LYw 510 (841)
-|..|.+..+.++||++.|. .+.|..+++... +.+.+.+..+.. .--..|+-|.+..+++||||
T Consensus 313 LitDI~iSlDDrfLYvs~W~--~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL--HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ----EEE-TTS-EEEEEETT--TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred ceEeEEEccCCCEEEEEccc--CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 35788899999999999999 789999998554 333333321110 01135788888888999999
Q ss_pred EeC
Q psy14257 511 IDA 513 (841)
Q Consensus 511 ~d~ 513 (841)
+.+
T Consensus 391 TnS 393 (461)
T PF05694_consen 391 TNS 393 (461)
T ss_dssp E--
T ss_pred Eee
Confidence 975
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
Probab=82.90 E-value=1.3 Score=30.62 Aligned_cols=31 Identities=29% Similarity=0.832 Sum_probs=22.4
Q ss_pred ccccCCCCCc--cCceeecCCCCceEEeecCCeee
Q psy14257 172 LHPCEAWGTC--SQDCEPSVSNNSYKCTCHAGYEL 204 (841)
Q Consensus 172 ~~eC~~~~~C--s~~C~~~~~~g~~~C~C~~G~~l 204 (841)
+++|.....| .+.|.+. .++|.|.|..||..
T Consensus 2 ~~~C~~~~~C~~~~~C~~~--~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASGNPCQNGGTCVNT--VGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCCCCcCCCCEeECC--CCCeEeECCCCCcC
Confidence 3456432456 3578888 89999999999864
|
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=82.36 E-value=92 Score=35.04 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=71.9
Q ss_pred cEEEEccCCceE--EEEecCCCCCc---eeEEEcCCCCeEEEEecCCCC-CeEEEecCCCC-----CcEEEEEecccCCC
Q psy14257 424 QIEVAKLSGQFR--RTLIAGDMESP---RAIALDPRFGLLFWTDWDSKA-PRIERCSMSGE-----HRSVIVRVDLLTSR 492 (841)
Q Consensus 424 ~I~v~~~~G~~~--~~l~~~~l~~P---~giavd~~~g~Ly~td~~~~~-~~I~r~~ldG~-----~~~~i~~~~~~~~~ 492 (841)
.|++.++..... +.+.. ....+ .++.++..+.+|+++...... ..++..+++.. ..+.+.. .
T Consensus 203 ~v~~~~~gt~~~~d~lvfe-~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~------~ 275 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFE-EPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP------R 275 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE------S
T ss_pred EEEEEECCCChHhCeeEEe-ecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC------C
Confidence 466666654322 23333 32334 378889888999988765444 67999998764 3333333 1
Q ss_pred CCCceeEEEeccCCEEEEEe---CCCCeEEEEEcCCCe----eEEEEcCCCCCCcceEEEEecCeEEEEeCCC
Q psy14257 493 GAWPNGLTLDYQLTRIYWID---AKSDSIHTVTYDGKD----HHVVLSNHDSLTHPFAIALFENHVYWTDWRT 558 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d---~~~~~I~~~~~dG~~----~~~i~~~~~~l~~P~gla~~~~~lY~td~~~ 558 (841)
... ..-.++..++++|+.- ..+.+|.+++++... ...++.... -..-.++.+++++|++....+
T Consensus 276 ~~~-~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~ 346 (414)
T PF02897_consen 276 EDG-VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYREN 346 (414)
T ss_dssp SSS--EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEET
T ss_pred CCc-eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEEC
Confidence 111 2223455578888743 345699999998754 234544322 123467888999999887554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=82.34 E-value=63 Score=33.14 Aligned_cols=232 Identities=13% Similarity=0.039 Sum_probs=124.1
Q ss_pred CCCeEEeccCccccccccccccEEEEe--cc-ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCC
Q psy14257 219 SSPFVIFSNRHELRGVDLRTFNVIALI--SS-LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295 (841)
Q Consensus 219 ~~p~ll~s~~~~I~~~~~~~~~~~~l~--~~-~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~ 295 (841)
.+.+|..+..+.|+..++++.+..+++ .+ .+++.+|.|.++ ++ -.++...+|.+..-++..-. ....+...
T Consensus 51 dk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d-gr--WMyTgseDgt~kIWdlR~~~---~qR~~~~~ 124 (311)
T KOG0315|consen 51 DKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD-GR--WMYTGSEDGTVKIWDLRSLS---CQRNYQHN 124 (311)
T ss_pred CcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeec-Ce--EEEecCCCceEEEEeccCcc---cchhccCC
Confidence 344555666778888888876544443 33 367888988876 34 44566777777766665321 11112111
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-ccccccccCcCCCceEEEEccCCEEEEEeCCCCeEE
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE-NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVE 374 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~-~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~ 374 (841)
....-+.+.|.- .-++. ...+|.|..+++-.. --..++.+....-..|++++++..|--+. +.++.+
T Consensus 125 -spVn~vvlhpnQ--teLis--------~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cy 192 (311)
T KOG0315|consen 125 -SPVNTVVLHPNQ--TELIS--------GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCY 192 (311)
T ss_pred -CCcceEEecCCc--ceEEe--------ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEE
Confidence 222334555433 22332 235678999887543 44556666667778899998866654443 445555
Q ss_pred EEEecC-CccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEE-EEecCCCCCceeEEEc
Q psy14257 375 SVRVDG-SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRR-TLIAGDMESPRAIALD 452 (841)
Q Consensus 375 ~~~ldG-~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~-~l~~~~l~~P~giavd 452 (841)
.-++-+ .....+.++..+.--..-++. | -+ .-..+...|-+..+.+.+.+.++-+.. ..+..+-..-.+-++.
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~-C---~l-SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILR-C---LL-SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEE-E---EE-CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 555433 222222222111000000000 0 00 000455566667778888888876333 3333444567888888
Q ss_pred CCCCeEEEEecCCCCCeEEEec
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCS 474 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ 474 (841)
.+..||+-+... ...+++-..
T Consensus 268 ~dg~YlvTassd-~~~rlW~~~ 288 (311)
T KOG0315|consen 268 ADGEYLVTASSD-HTARLWDLS 288 (311)
T ss_pred cCccEEEecCCC-Cceeecccc
Confidence 876676554433 344555443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=82.25 E-value=1.1e+02 Score=35.99 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=23.0
Q ss_pred EEeccCCEEEEEeCCCCeEEEEEcCCCeeEE
Q psy14257 500 TLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530 (841)
Q Consensus 500 alD~~~~~LYw~d~~~~~I~~~~~dG~~~~~ 530 (841)
..|+..+.+|++-.+.+.|+.+++.......
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGSIRK 299 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCcEEe
Confidence 4567778999888888889999886554333
|
|
| >PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet | Back alignment and domain information |
|---|
Probab=81.44 E-value=1.7 Score=29.40 Aligned_cols=25 Identities=28% Similarity=0.721 Sum_probs=17.7
Q ss_pred CCCCCCcccCCCCcEEecCCCceecC
Q psy14257 139 SDCHHDCYNTPEGFMCVCPRDMYLQP 164 (841)
Q Consensus 139 ~~C~~~C~~~~g~~~C~C~~Gy~l~~ 164 (841)
..|.+.|-... ...|.|++||.|..
T Consensus 6 t~CpA~CDpn~-~~~C~CPeGyIlde 30 (34)
T PF09064_consen 6 TECPADCDPNS-PGQCFCPEGYILDE 30 (34)
T ss_pred ccCCCccCCCC-CCceeCCCceEecC
Confidence 45666776433 34999999999854
|
Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane |
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=80.43 E-value=90 Score=33.68 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=82.0
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+..|.|.+....|...++.....+.-+.+.....+|++|.+..-|||-.-- ...|..-+|.-. ++|-.- ...
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge---dk~VKCwDLe~n--kvIR~Y---hGH 234 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE---DKQVKCWDLEYN--KVIRHY---HGH 234 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC---CCeeEEEechhh--hhHHHh---ccc
Confidence 334445555566777777655555555556778899999988888876643 356666666422 222110 034
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcce-EEEE--ecCeEEEEeCCCCeEEEEeccCC
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPF-AIAL--FENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~-gla~--~~~~lY~td~~~~~i~~~~~~~g 569 (841)
+.....|++.+.- ++.++-.....++.-|......-.++.++ ..|. .+.. .+..+|-. .....|.-.+...|
T Consensus 235 lS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH---~~~V~~V~~~~~dpqvit~-S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 235 LSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGH---TNPVASVMCQPTDPQVITG-SHDSTVRLWDLRAG 309 (460)
T ss_pred cceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCC---CCcceeEEeecCCCceEEe-cCCceEEEeeeccC
Confidence 5556677777544 44446555556666676655444444432 1222 2222 24455433 33456665665555
Q ss_pred cceEE
Q psy14257 570 SDVTL 574 (841)
Q Consensus 570 ~~~~~ 574 (841)
+....
T Consensus 310 kt~~t 314 (460)
T KOG0285|consen 310 KTMIT 314 (460)
T ss_pred ceeEe
Confidence 54443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 841 | ||||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 1e-69 | ||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 1e-69 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 2e-59 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 3e-12 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 2e-59 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 4e-12 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 3e-59 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 4e-12 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 4e-52 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 5e-51 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 2e-47 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 4e-11 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 1e-46 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 2e-11 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 2e-45 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 3e-12 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 5e-45 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 4e-12 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 1e-44 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 5e-11 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 7e-42 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 6e-11 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 8e-37 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 6e-04 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 4e-26 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 1e-05 | ||
| 1f5y_A | 85 | Nmr Structure Of A Concatemer Of The First And Seco | 1e-07 | ||
| 1f5y_A | 85 | Nmr Structure Of A Concatemer Of The First And Seco | 1e-04 | ||
| 2lgp_A | 94 | Solution Structure Of La45 From Ldlr Length = 94 | 2e-06 | ||
| 2fcw_B | 80 | Structure Of A Complex Between The Pair Of The Ldl | 4e-05 | ||
| 2fyj_A | 82 | Nmr Solution Structure Of Calcium-Loaded Lrp Double | 4e-04 | ||
| 2gtl_O | 215 | Lumbricus Erythrocruorin At 3.5a Resolution Length | 5e-04 | ||
| 1hz8_A | 82 | Solution Structure And Backbone Dynamics Of A Conca | 6e-04 | ||
| 3bps_E | 83 | Pcsk9:egf-a Complex Length = 83 | 6e-04 |
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85 | Back alignment and structure |
|
| >pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85 | Back alignment and structure |
|
| >pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr Length = 94 | Back alignment and structure |
|
| >pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80 | Back alignment and structure |
|
| >pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module Length = 82 | Back alignment and structure |
|
| >pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution Length = 215 | Back alignment and structure |
|
| >pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of Egf-Homology Modules Of The Human Low Density Lipoprotein Receptor Length = 82 | Back alignment and structure |
|
| >pdb|3BPS|E Chain E, Pcsk9:egf-a Complex Length = 83 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 339 bits (871), Expect = e-104
Identities = 158/709 (22%), Positives = 273/709 (38%), Gaps = 90/709 (12%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI +W+CDG DC +GSDE + C + C + F C++ +CI + CD
Sbjct: 79 CIPQFWRCDGQVDCDNGSDE--QGCPPKTCSQDEFRCHDG-KCISRQFVCDS-------- 127
Query: 63 TSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPAC 122
DC D SDE +C C P F C TCIP+ CD +P C
Sbjct: 128 -------DRDCLDGSDEASC--------PVLTCGPASFQCNS--STCIPQLWACDNDPDC 170
Query: 123 FNGEDEMF----------------------CDEKQCLRS----DCHHDCYNTPEGFMCVC 156
+G DE C +C+ S D DC + + C
Sbjct: 171 EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAV 230
Query: 157 PRDMYLQPDLITCSYLHPCEAWGTCS--QDCEPSVSNNSYKC--TCHAGYELEPDMFTCK 212
+PD CS + C DC+ C + + C
Sbjct: 231 AT---CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECI 287
Query: 213 SKSK--NDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDV 270
+ K N + +S+ + S + N + + +
Sbjct: 288 TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 347
Query: 271 IDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330
+ I + V G + + + A S++ ++
Sbjct: 348 RCEDIDECQ--DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 405
Query: 331 EKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLE 390
+ + + N++ +L + + +YW D + S ++D + +
Sbjct: 406 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSY 462
Query: 391 VLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIA 450
+ P+ D WI N+YW +S L + VA G R+TL + PRAI
Sbjct: 463 DTVISRDIQAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 520
Query: 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYW 510
+DP G ++WTDW + +I++ ++G +V ++ WPNG+TLD R+YW
Sbjct: 521 VDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENI-----QWPNGITLDLLSGRLYW 574
Query: 511 IDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
+D+K SI ++ +G + +L + L HPF++A+FE+ V+WTD ++ AN+ GS
Sbjct: 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634
Query: 571 DVTLIQRTLTQPF-IYVNGVVKK----SPCE---MNNGNCSHLCLI-----GMNGTYKCQ 617
DV L+ L P + + + + + CE ++NG C +LCL + + C
Sbjct: 635 DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCA 694
Query: 618 CPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIP 666
CP M L D ++C + +++ + ++ + + T T + P
Sbjct: 695 CPDGMLLARDMRSC-LTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRP 742
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 3e-30
Identities = 68/239 (28%), Positives = 79/239 (33%), Gaps = 58/239 (24%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGL 60
CI W CDG +C+DGSDE E C C F+C RCIP W CDGQ DC
Sbjct: 35 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD- 93
Query: 61 NDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEP 120
+ SDE C C EF C D CI + VCD +
Sbjct: 94 --------------NGSDEQGCP--------PKTCSQDEFRCHD--GKCISRQFVCDSDR 129
Query: 121 ACFNGEDEMFCDEKQC----------------LRSDCHHDCYNTPEGFMCVCPRDMYLQP 164
C +G DE C C D DC + + + C Q
Sbjct: 130 DCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQG 189
Query: 165 DLITCSYLHPCEAWGTC---------SQDCEP-SVSNNSYKCTCHAGYELEPDMFTCKS 213
D CS G C DC+ S N TC PD F C
Sbjct: 190 DSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCR------PDEFQCSD 242
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 98.8 bits (245), Expect = 2e-21
Identities = 52/228 (22%), Positives = 74/228 (32%), Gaps = 49/228 (21%)
Query: 8 WKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDED 67
WK + +C+ + F C + +CI W CDG +C
Sbjct: 3 WKLRWTVALLLAAAGT---AVGDRCERNEFQCQDG-KCISYKWVCDGSAECQ-------- 50
Query: 68 HCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGED 127
D SDE+ T + C+ +F C + CIP+ CDG+ C NG D
Sbjct: 51 -------DGSDESQETCL------SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSD 97
Query: 128 EMFCDEKQCLRSDCHHDCYN---TPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCS-- 182
E C K C S C++ F+C RD D +C L A C+
Sbjct: 98 EQGCPPKTC--SQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS 155
Query: 183 ------------QDCEPSVSNNSYKCTCHAGYEL-----EPDMFTCKS 213
DCE +C ++ F C S
Sbjct: 156 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 203
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 85.7 bits (211), Expect = 3e-17
Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 37/236 (15%)
Query: 598 NNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKT-CQVADSQFIIFSRPREIRGVDLEHPY 656
+ CS LC + + G YKCQC +L K V ++ F+ E+R + L+
Sbjct: 357 DPDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
Query: 657 YHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLT 716
Y ++ IP + + L+ + A+ +IYW+D + + +
Sbjct: 416 YTSL----IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------- 458
Query: 717 PLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTT 776
V+ I P GLA+DWI N++ S + V + +G + T
Sbjct: 459 ---------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKT 507
Query: 777 ILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
+ SK +I V PV G M+W++ I+ ++G ++V++
Sbjct: 508 LFREN------GSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDIYSLVTEN 556
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 662 TISIPQVFSPNNLNFDAANKKIYWTDQEYNEV--------KRSSIVGGQIQ----LVVDA 709
T+ + +P+ L D + IYWTD V KR ++ +VVD
Sbjct: 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 523
Query: 710 VFEF-YLT-----PLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSK 763
V F Y T K+ + G I +V I P+G+ +D ++ ++ S
Sbjct: 524 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHS 581
Query: 764 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823
I ++ G + TIL +E L+ S+AV+ + K+FW+++ + + + G+
Sbjct: 582 ISSIDVNGGNRKTILEDEKR----LAHPFSLAVF--EDKVFWTDIINEAI-FSANRLTGS 634
Query: 824 KRETVVSQKKYP 835
+ P
Sbjct: 635 DVNLLAENLLSP 646
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 326 bits (836), Expect = e-100
Identities = 152/652 (23%), Positives = 243/652 (37%), Gaps = 82/652 (12%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLN 61
CI + CD D DC DGSDE C C + F CN + CIP WACD PDC
Sbjct: 99 KCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCE-- 153
Query: 62 DTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPA 121
D SDE C + C EF C CI + CDG P
Sbjct: 154 DGSDEWPQ-----------RCRGLYVFQGDSSPCSAFEFHCLS--GECIHSSWRCDGGPD 200
Query: 122 CFNGEDEMFCDEKQCLRSDCHHDCYNT---PEGFMCVCPRDMYLQPDLITCSYLHPCEAW 178
C + DE C C + C + C D D + C + CE
Sbjct: 201 CKDKSDEENCAVATCRPDEFQ--CSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGP 258
Query: 179 GTC---SQDCEPSVSNNSYKCTCHA---GYELEPDMFTCKSKSKNDSSPFVIFSNRHELR 232
S +C C + EP ++ +++
Sbjct: 259 NKFKCHSGECITL----DKVCNMARDCRDWSDEPIKECGTNECLDNNGG----------- 303
Query: 233 GVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVV 292
+ L + F + D + +
Sbjct: 304 ----CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 359
Query: 293 QTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPS 352
+ A +G Y+F+ + + + + N++
Sbjct: 360 EGFQLDPHTKACKAVGSIAYLFFT----------NRHEVRKMTLDRSEYTSLIPNLRNVV 409
Query: 353 SLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
+L + + +YW D + S ++D + S++ + + P+ D WI
Sbjct: 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLAVD--WIH 464
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER 472
N+YW +S L + VA G R+TL PRAI +DP G ++WTDW + +I++
Sbjct: 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTP-AKIKK 523
Query: 473 CSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVL 532
++G +V ++ WPNG+TLD R+YW+D+K SI ++ +G + +L
Sbjct: 524 GGLNGVDIYSLVTENI-----QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578
Query: 533 SNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYVNGVVK 591
+ L HPF++A+FE+ V+WTD ++ AN+ GSDV L+ L P + + +
Sbjct: 579 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLT 638
Query: 592 K-------SPCEMNNGNCSHLCLI-----GMNGTYKCQCPHVMKLMSDNKTC 631
+ ++NG C +LCL + + C CP M L D ++C
Sbjct: 639 QPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 690
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 131 bits (329), Expect = 1e-31
Identities = 66/234 (28%), Positives = 78/234 (33%), Gaps = 48/234 (20%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGL 60
CI W CDG +C+DGSDE E C C F+C RCIP W CDGQ DC
Sbjct: 17 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD- 75
Query: 61 NDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEP 120
+ SDE C C EF C D CI + VCD +
Sbjct: 76 --------------NGSDEQGCP--------PKTCSQDEFRCHD--GKCISRQFVCDSDR 111
Query: 121 ACFNGEDEMFCDEKQC----------------LRSDCHHDCYNTPEGFMCVCPRDMYLQP 164
C +G DE C C D DC + + + C Q
Sbjct: 112 DCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQG 171
Query: 165 DLITCSYLHPCEAWGTCSQ-----DCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
D CS G C D P + S + C PD F C
Sbjct: 172 DSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATC-RPDEFQCSD 224
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 85.2 bits (210), Expect = 3e-17
Identities = 48/199 (24%), Positives = 70/199 (35%), Gaps = 43/199 (21%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRT 89
+C+ + F C + +CI W CDG +C D SDE+ T
Sbjct: 4 DRCERNEFQCQDG-KCISYKWVCDG---------------SAECQDGSDESQETC----- 42
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYN-- 147
+ C+ +F C + CIP+ CDG+ C NG DE C K C S C++
Sbjct: 43 -LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTC--SQDEFRCHDGK 99
Query: 148 -TPEGFMCVCPRD------------MYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNS- 193
F+C RD + P C+ C D +P + S
Sbjct: 100 CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC--DNDPDCEDGSD 157
Query: 194 -YKCTCHAGYELEPDMFTC 211
+ C Y + D C
Sbjct: 158 EWPQRCRGLYVFQGDSSPC 176
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 82.2 bits (202), Expect = 3e-16
Identities = 48/239 (20%), Positives = 92/239 (38%), Gaps = 36/239 (15%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKT-CQVADSQFIIFSRPREIRGVDLE 653
E + + + + G YKCQC +L K V ++ F+ E+R + L+
Sbjct: 335 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD 394
Query: 654 HPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713
Y ++ P + + L+ + A+ +IYW+D + + +
Sbjct: 395 RSEYTSLI----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---------- 440
Query: 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773
V+ I P GLA+DWI N++ S + V + +G
Sbjct: 441 ------------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVK 486
Query: 774 QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
+ T+ + SK +I V PV G M+W++ I+ ++G ++V++
Sbjct: 487 RKTLFREQ------GSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDIYSLVTEN 538
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 8e-05
Identities = 31/136 (22%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNT-----P 149
CE +EF CQD CI VCDG C +G DE C P
Sbjct: 6 CERNEFQCQD--GKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 63
Query: 150 EGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCS----------QDCEPSVSNNSYKCTCH 199
+ + C D D C + C D + + S + +C
Sbjct: 64 QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP 123
Query: 200 AGYELEPDMFTCKSKS 215
P F C S +
Sbjct: 124 VL-TCGPASFQCNSST 138
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 4e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 662 TISIPQVFSPNNLNFDAANKKIYWTDQEYNEV--------KRSSIVGGQIQ----LVVDA 709
T+ + +P+ L D + IYWTD V KR ++ Q +VVD
Sbjct: 446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDP 505
Query: 710 VFEF-YLT-----PLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSK 763
V F Y T K+ + G I +V I P+G+ +D ++ ++ S
Sbjct: 506 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHS 563
Query: 764 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823
I ++ G + TIL +E L+ S+AV+ + K+FW+++ + + G+
Sbjct: 564 ISSIDVNGGNRKTILEDEKR----LAHPFSLAVF--EDKVFWTDIINEAIFSANRL-TGS 616
Query: 824 KRETVVSQKKYP 835
+ P
Sbjct: 617 DVNLLAENLLSP 628
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 320 bits (820), Expect = 7e-99
Identities = 138/514 (26%), Positives = 240/514 (46%), Gaps = 60/514 (11%)
Query: 325 SSDGGIEKAGMHGENRSPLV-TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
S I + + N + + ++ S+L D + +YW D L T+ ++GS
Sbjct: 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71
Query: 384 TVSFNLEVLGSDSRVGIPNCRPEDNL---WIGKNLYWVESNLDQIEVAKLSGQFRRTLIA 440
G+ + + W+GKNLYW ++ ++IEV+KL GQ R+ L+
Sbjct: 72 EHVVE---------FGLDYP---EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW 119
Query: 441 GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLT 500
D++SPRA+ALDP G ++WT+W K P+I+R +M G R+ +V NGLT
Sbjct: 120 KDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLV------PNVGRANGLT 172
Query: 501 LDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNS 560
+DY R+YW D ++ I + G + V+ + L HPF + +++++YWTDW S
Sbjct: 173 IDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD---LPHPFGLTQYQDYIYWTDWSRRS 229
Query: 561 VIRANKWNGSDVTLIQRTLTQPFIYVNGVVKK----SPCEMNNGNCSHLCLIGMNGTYKC 616
+ RANK +G + T+IQ L + + + C +NG+CSHLCL G + C
Sbjct: 230 IERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVC 289
Query: 617 QCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNF 676
CP L +DN+TC + + + I + ++ I + I + + +++
Sbjct: 290 GCPAHYSLNADNRTCSAPTTFLLFSQK-SAINRMVIDEQQSPDI-ILPIHSLRNVRAIDY 347
Query: 677 DAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAG 736
D +K++YW D N ++++ G Q VV + +
Sbjct: 348 DPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS--------------------SVPSQNL 387
Query: 737 ISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAV 796
P L+ID ++ ++ + + I V L+G +L E + ++ V
Sbjct: 388 EIQPYDLSIDIYSRYIYWTCEA--TNVINVTRLDGRSVGVVLKGE------QDRPRAVVV 439
Query: 797 WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
P KG M+++N+ ++ IE A +DGT+RE +
Sbjct: 440 NPEKGYMYFTNLQERSPKIERAALDGTEREVLFF 473
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 241 bits (615), Expect = 1e-69
Identities = 72/304 (23%), Positives = 133/304 (43%), Gaps = 16/304 (5%)
Query: 335 MHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGS 394
L +++ ++ D LYW DS N + + DGS+ + S
Sbjct: 326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVV-SSVPS 384
Query: 395 DSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPR 454
+ P D + +YW + I V +L G+ ++ G+ + PRA+ ++P
Sbjct: 385 QNLEIQPYDLSID--IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPE 442
Query: 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK 514
G +++T+ ++P+IER ++ G R V+ L + P L LD +L +++W D+
Sbjct: 443 KGYMYFTNLQERSPKIERAALDGTEREVLFFSGL-----SKPIALALDSRLGKLFWADSD 497
Query: 515 SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTL 574
I + G + V+ ++ + P + +FEN +YW D + + + + T
Sbjct: 498 LRRIESSDLSGANRIVLEDSN--ILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTK 555
Query: 575 IQRTLTQPFIYVNGVVKK------SPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDN 628
+Q + Q PC +NG CSH+CL+ +GT +C CP + L+ D
Sbjct: 556 VQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDE 615
Query: 629 KTCQ 632
+C
Sbjct: 616 LSCG 619
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 9e-47
Identities = 123/656 (18%), Positives = 231/656 (35%), Gaps = 151/656 (23%)
Query: 221 PFVIFSNRHELRGVDLRT--FNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNA 278
F++FS R ++R + L T NV ++ +K ALDF T N ++WTD+ I A
Sbjct: 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVT--DNRIYWTDISLKTISRA 64
Query: 279 TLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE 338
+ G S ++ VV+ GL EG+AVDW+GKNLY WA ++ IE + + G+
Sbjct: 65 FMNG---SALEHVVEFGLDYPEGMAVDWLGKNLY--WA-------DTGTNRIEVSKLDGQ 112
Query: 339 NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSERTVSFNLEVLGSDSR 397
+R LV K++ P +L +D + +YW + ++ +DGSERT
Sbjct: 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--------- 163
Query: 398 VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGL 457
+ + + LYW + + + IE + + G R + P + +
Sbjct: 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPH-PFGLTQYQDY-- 219
Query: 458 LFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRG------------------------ 493
++WTDW ++ IER + + I++ L
Sbjct: 220 IYWTDWSRRS--IERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 277
Query: 494 ------------AWPNGLTLDYQLTRIYWIDA-----KSDSIHTVTYDGKDHHVVLSNHD 536
P +L+ + +I+ + D + ++
Sbjct: 278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 337
Query: 537 SLTHPFAIA--LFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSP 594
SL + AI + +YW D R N + +A + +GS + VV P
Sbjct: 338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE-DGSQGFTV-------------VVSSVP 383
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEH 654
+ L + + + I L+
Sbjct: 384 SQNLEIQPYDLSIDIYSRYI-----------------------YWTCEATNVINVTRLDG 420
Query: 655 PYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFY 714
+ + P + + +Y+T+ + +I+
Sbjct: 421 RSVGVVLKGEQDR---PRAVVVNPEKGYMYFTNLQER--------SPKIE---------- 459
Query: 715 LTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQ 774
R+++ G + +++ +G+S P LA+D +F A S +I +L G +
Sbjct: 460 ------RAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSD--LRRIESSDLSGANR 511
Query: 775 TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
+ + + + + ++W + +Q IE M G + T V
Sbjct: 512 IVLEDSNIL--------QPVGLTVFENWLYWIDKQQQ--MIEKIDMTGREGRTKVQ 557
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-30
Identities = 71/349 (20%), Positives = 112/349 (32%), Gaps = 29/349 (8%)
Query: 107 RTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEG-FMCVCPRDMYLQPD 165
RT I L + F+ + +E C H C P G F+C CP L D
Sbjct: 241 RTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNAD 300
Query: 166 LITCSYLHPCEAWGTCSQDCE-PSVSNNSYKCTCHAGYELEPDMFTCKSKSKN----DSS 220
TCS + S S K DS
Sbjct: 301 NRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR 360
Query: 221 PFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATL 280
+I + G T V ++ S D + ++WT + I L
Sbjct: 361 QNMIRKAQ--EDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRL 418
Query: 281 IGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENR 340
G ++ VV++ + V+ YM++ IE+A + G R
Sbjct: 419 DG---RSVGVVLKGEQDRPRAVVVNPEKG--YMYFTNL-----QERSPKIERAALDGTER 468
Query: 341 SPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGI 400
L + P +L +D L+W DS L +ES + G+ R V + +L
Sbjct: 469 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNIL-------- 520
Query: 401 PNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+P LYW++ IE ++G+ RT + + I
Sbjct: 521 ---QPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDI 566
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-24
Identities = 48/198 (24%), Positives = 93/198 (46%), Gaps = 37/198 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
F++FSR +IR + LE + I + V + L+FD + +IYWTD + R+
Sbjct: 8 FLLFSRRADIRRISLETNNNNVA--IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 65
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+ G ++ VV+ G+ +P G+A+DW+ +N++ A +
Sbjct: 66 MNGSALEHVVEF--------------------------GLDYPEGMAVDWLGKNLYWADT 99
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V L+G+++ ++ + L ++A+ P +G M+W+ + I+
Sbjct: 100 GT--NRIEVSKLDGQHRQVLVWKD------LDSPRALALDPAEGFMYWTEWGGKPK-IDR 150
Query: 818 AFMDGTKRETVVSQKKYP 835
A MDG++R T+V
Sbjct: 151 AAMDGSERTTLVPNVGRA 168
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 82.9 bits (204), Expect = 2e-16
Identities = 62/396 (15%), Positives = 125/396 (31%), Gaps = 44/396 (11%)
Query: 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516
L ++ I R S+ + +V + + + + L D RIYW D
Sbjct: 8 FLLFSRRAD----IRRISLETNNNNVAIPLTGVKE----ASALDFDVTDNRIYWTDISLK 59
Query: 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVTL 574
+I +G V+ L +P +A+ ++YW D TN + + L
Sbjct: 60 TISRAFMNGSALEHVVE--FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL 117
Query: 575 IQRTLTQPF-IYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
+ + L P + ++ + G + M+G+ + + +
Sbjct: 118 VWKDLDSPRALALD-PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYA 176
Query: 634 ADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEV 693
+ I ++ I +P F IYWTD +
Sbjct: 177 KRRLYWTDLDTNLIESSNMLGLNREVIAD-DLPHPFG-----LTQYQDYIYWTDWSRRSI 230
Query: 694 KRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGI---------------- 737
+R++ GQ + ++ ++ + L SS G + G
Sbjct: 231 ERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCG 290
Query: 738 -SHPSGLAIDWIAQNMFIAVSS-PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIA 795
L D + +S I ++ + I+ + L + +I
Sbjct: 291 CPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHS----LRNVRAID 346
Query: 796 VWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ 831
P+ +++W + + I A DG++ TVV
Sbjct: 347 YDPLDKQLYWIDSRQN--MIRKAQEDGSQGFTVVVS 380
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 300 bits (768), Expect = 2e-91
Identities = 148/513 (28%), Positives = 254/513 (49%), Gaps = 59/513 (11%)
Query: 325 SSDGGIEKAGMH-GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
++ + G+ + +V ++ +++ ++ ++YW D ++ + +E
Sbjct: 15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 74
Query: 384 TVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDM 443
+ + L S + D W+G+ LYW +S ++IEV+ L G R+ L ++
Sbjct: 75 VQNVVVSGLLSPDGLAC------D--WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 126
Query: 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503
+ PRAIALDP G ++WTDW P+IER M G R +I+ ++ WPNGLTLDY
Sbjct: 127 DQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEI-----YWPNGLTLDY 180
Query: 504 QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIR 563
+ ++YW DAK + IH DG + V+ L HPFA+ LFE+ +YWTDW T+S++
Sbjct: 181 EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILA 238
Query: 564 ANKWNGSDVTLIQRTLTQPF-----IYVNGVVKKSPCEMNNGNCSHLCLIGMNG-TYKCQ 617
NK+ G + I + P +PC ++NG CSHLCL+ Y+C
Sbjct: 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCA 298
Query: 618 CPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFD 677
CP +KL+ + KTC+ ++ ++ +R ++R + L+ P + I + + + +++D
Sbjct: 299 CPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIV-LQLEDIRHAIAIDYD 357
Query: 678 AANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGI 737
IYWTD E + +RS I G Q VV A I
Sbjct: 358 PVEGYIYWTDDEVRAI--------------------------RRSFIDGSGSQFVVTAQI 391
Query: 738 SHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVW 797
+HP G+A+DW+A+N++ + +I V L G + ++S + L + +I +
Sbjct: 392 AHPDGIAVDWVARNLYWTDTG--TDRIEVTRLNGTMRKILISED------LEEPRAIVLD 443
Query: 798 PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
P+ G M+W++ + IE A +DG+ R +V+
Sbjct: 444 PMVGYMYWTDWGEIPK-IERAALDGSDRVVLVN 475
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 2e-65
Identities = 103/313 (32%), Positives = 153/313 (48%), Gaps = 21/313 (6%)
Query: 322 PSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS 381
+ +D L ++I+ ++ D + +YW D + + +DGS
Sbjct: 322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS 381
Query: 382 ERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG 441
+ GI W+ +NLYW ++ D+IEV +L+G R+ LI+
Sbjct: 382 GSQF---VVTAQIAHPDGI------AVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE 432
Query: 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTL 501
D+E PRAI LDP G ++WTDW P+IER ++ G R V+V L WPNGL L
Sbjct: 433 DLEEPRAIVLDPMVGYMYWTDWGE-IPKIERAALDGSDRVVLVNTSL-----GWPNGLAL 486
Query: 502 DYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSV 561
DY +IYW DAK+D I + DG V++ D + H F L ++VYWTDW+ S+
Sbjct: 487 DYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV--EDKIPHIFGFTLLGDYVYWTDWQRRSI 544
Query: 562 IRANKWNGSDVTLIQRT---LTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQC 618
R +K + +I + + V+ V+ +PC NG CSHLCL +C C
Sbjct: 545 ERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYR-PQGLRCAC 603
Query: 619 PHVMKLMSDNKTC 631
P +L+SD KTC
Sbjct: 604 PIGFELISDMKTC 616
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-26
Identities = 91/508 (17%), Positives = 173/508 (34%), Gaps = 119/508 (23%)
Query: 252 IALDFYYTPTANMVFWTDVID-DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKN 310
IALD P++ ++WTD + KI A + G S+ +++ + + GL +D+ +
Sbjct: 132 IALD----PSSGFMYWTDWGEVPKIERAGMDG---SSRFIIINSEIYWPNGLTLDYEEQK 184
Query: 311 LYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL 370
LY ++ I K+ + G NR +V ++ P +L + +DILYW D
Sbjct: 185 LYWA---------DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWST 233
Query: 371 NTVESV-RVDGSERTVSFN-------LEVLGSDSRVGIPNCRPEDN-------------- 408
+++ + + G + + + N DN
Sbjct: 234 HSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP 293
Query: 409 --------------------LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRA 448
+ L + L D+ A
Sbjct: 294 FYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353
Query: 449 IALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRI 508
I DP G ++WTD + + I R + G +V + A P+G+ +D+ +
Sbjct: 354 IDYDPVEGYIYWTDDEVR--AIRRSFIDGSGSQFVVTAQI-----AHPDGIAVDWVARNL 406
Query: 509 YWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANK 566
YW D +D I +G +++S L P AI L ++YWTDW I
Sbjct: 407 YWTDTGTDRIEVTRLNGTMRKILISE--DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAA 464
Query: 567 WNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMS 626
+GSD ++ + + NG L
Sbjct: 465 LDGSDRVVL---VNTSLGWPNG-----------------------------------LAL 486
Query: 627 DNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWT 686
D ++ + ++ +I ++ + + IP +F F +YWT
Sbjct: 487 DYDEGKI----YWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFG-----FTLLGDYVYWT 537
Query: 687 DQEYNEVKRSSIVGGQIQLVVDAVFEFY 714
D + ++R + ++++D + +
Sbjct: 538 DWQRRSIERVHKRSAEREVIIDQLPDLM 565
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 68/332 (20%), Positives = 125/332 (37%), Gaps = 71/332 (21%)
Query: 157 PRDMYLQPDLITCSYLHP-CEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKS 215
P D++ + +P G CS C S Y+C C G +L + TCK
Sbjct: 257 PMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK--- 313
Query: 216 KNDSSPFVIFSNRHELRGVDLRTFN---VIALISSLKNTIALDF-------YYT------ 259
+ ++ ++ + R +LR + L T + ++ + +++ IA+D+ Y+T
Sbjct: 314 -DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRA 372
Query: 260 ----------------------------PTANMVFWTDVIDDKIYNATLIGNSLSNIDVV 291
A ++WTD D+I L G + ++
Sbjct: 373 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG---TMRKIL 429
Query: 292 VQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWP 351
+ L + +D + YM+W W P IE+A + G +R LV ++ WP
Sbjct: 430 ISEDLEEPRAIVLDPMVG--YMYWTDWGEIPK------IERAALDGSDRVVLVNTSLGWP 481
Query: 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI 411
+ L +DY++ +YW D+ + +E + DG+ R V ++ +
Sbjct: 482 NGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH-----------IFGFTLL 530
Query: 412 GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDM 443
G +YW + IE R +I
Sbjct: 531 GDYVYWTDWQRRSIERVHKRSAEREVIIDQLP 562
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 36/193 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
++++ R++R VD + + TI + + ++F ++ IYW+D +KR+
Sbjct: 11 LLLYANRRDLRLVDATNGKENA--TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 68
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+Q VV +G+ P GLA DW+ + ++ S
Sbjct: 69 FNKT-------------------------ESVQNVVVSGLLSPDGLACDWLGEKLYWTDS 103
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V NL+G + + E L + +IA+ P G M+W++ + IE
Sbjct: 104 E--TNRIEVSNLDGSLRKVLFWQE------LDQPRAIALDPSSGFMYWTDWGEVPK-IER 154
Query: 818 AFMDGTKRETVVS 830
A MDG+ R +++
Sbjct: 155 AGMDGSSRFIIIN 167
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 7e-04
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 154 CVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ E G CS C +C C G+EL DM TC
Sbjct: 561 LPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYR--PQGLRCACPIGFELISDMKTC 616
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 4e-81
Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 25/320 (7%)
Query: 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384
++ + K + + L+ N++ +L + + +YW D + S ++D +
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 65
Query: 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDME 444
+ + P+ D WI N+YW +S L + VA G R+TL +
Sbjct: 66 ---SSYDTVISRDIQAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 120
Query: 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQ 504
PRAI +DP G ++WTDW + +I++ ++G +V ++ WPNG+TLD
Sbjct: 121 KPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENI-----QWPNGITLDLL 174
Query: 505 LTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRA 564
R+YW+D+K SI ++ +G + +L + L HPF++A+FE+ V+WTD ++ A
Sbjct: 175 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 565 NKWNGSDVTLIQRTLTQPFIYVNGVVKK-----SPCE---MNNGNCSHLCLI-----GMN 611
N+ GSDV L+ L P V + CE ++NG C +LCL +
Sbjct: 235 NRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHS 294
Query: 612 GTYKCQCPHVMKLMSDNKTC 631
+ C CP M L D ++C
Sbjct: 295 PKFTCACPDGMLLARDMRSC 314
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 35/193 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
++ F+ E+R + L+ Y ++ IP + + L+ + A+ +IYW+D + +
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+ V+ I P GLA+DWI N++ S
Sbjct: 59 LDRAHGV----------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 96
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
+ V + +G + T+ SK +I V PV G M+W++ I+
Sbjct: 97 V--LGTVSVADTKGVKRKTLFREN------GSKPRAIVVDPVHGFMYWTDWGTPAK-IKK 147
Query: 818 AFMDGTKRETVVS 830
++G ++V+
Sbjct: 148 GGLNGVDIYSLVT 160
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 6e-09
Identities = 37/266 (13%), Positives = 78/266 (29%), Gaps = 79/266 (29%)
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
LF+T+ + + ++ + ++ L + RIYW D
Sbjct: 2 AYLFFTNRHE----VRKMTLDRSEYTSLI------PNLRNVVALDTEVASNRIYWSDLSQ 51
Query: 516 DSIHTVTYDGKD--HHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSD 571
I + D + P +A+ +++YWTD +V A+
Sbjct: 52 RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 111
Query: 572 VTLIQRTLTQP----------FIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHV 621
TL + ++P F+Y + G + + G+NG
Sbjct: 112 KTLFRENGSKPRAIVVDPVHGFMYW----------TDWGTPAKIKKGGLNGV-------- 153
Query: 622 MKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANK 681
I ++ + PN + D +
Sbjct: 154 -------------------------------------DIYSLVTENIQWPNGITLDLLSG 176
Query: 682 KIYWTDQEYNEVKRSSIVGGQIQLVV 707
++YW D + + + + GG + ++
Sbjct: 177 RLYWVDSKLHSISSIDVNGGNRKTIL 202
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 2e-76
Identities = 101/290 (34%), Positives = 143/290 (49%), Gaps = 24/290 (8%)
Query: 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406
N++ +L + +++++W D L+ + ++GS + + P
Sbjct: 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------STGLESPGGLAV 166
Query: 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSK 466
D W+ LYW +S +IEVA L G R+ L+ +E PRAIAL P G ++WTDW +
Sbjct: 167 D--WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 224
Query: 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526
PRIE SM G R +I L WPNGLT+DY R+YW+DAK I DG
Sbjct: 225 -PRIEASSMDGSGRRIIADTHL-----FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278
Query: 527 DHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYV 586
V+S L HPFAI +FE+ +YWTDW T S+ ANK+ G + +I+ L P
Sbjct: 279 HRKAVISQG--LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336
Query: 587 -----NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
K+ C NNG C+HLCL Y C CP + ++ C
Sbjct: 337 TLHPQRQPAGKNRCGDNNGGCTHLCLPS-GQNYTCACPTGFRK-INSHAC 384
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 4e-41
Identities = 85/363 (23%), Positives = 136/363 (37%), Gaps = 73/363 (20%)
Query: 125 GEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQD 184
GE+ C+ C C C C L D TC ++ C G CSQ
Sbjct: 2 GEEN--CNVNNG---GCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG 56
Query: 185 CEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIAL 244
C S +++C C AGYEL PD +CK+ P ++F+NR ++R V L
Sbjct: 57 CTNS--EGAFQCWCEAGYELRPDRRSCKA---LGPEPVLLFANRIDIRQVLPHRSEYTLL 111
Query: 245 ISSLKNTIALDFYYT-----------------------------------------PTAN 263
+++L+N IALDF++ +
Sbjct: 112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 171
Query: 264 MVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPS 323
++WTD +I A L G ++ V++ L +A+ + ++W W +P
Sbjct: 172 KLYWTDSGTSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEG--TIYWTDWGNTPR 226
Query: 324 NSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
IE + M G R + ++ WP+ L IDY +YW D+ + +E +DGS R
Sbjct: 227 ------IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 280
Query: 384 TVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDM 443
V+ ED +LYW + + I A + +I +
Sbjct: 281 KA-----VISQGLPHPFAITVFED------SLYWTDWHTKSINSANKFTGKNQEIIRNKL 329
Query: 444 ESP 446
P
Sbjct: 330 HFP 332
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 3e-24
Identities = 51/239 (21%), Positives = 99/239 (41%), Gaps = 40/239 (16%)
Query: 594 PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLE 653
C G CS C G ++C C +L D ++C+ + ++ R L
Sbjct: 46 ECA-EEGYCSQGC-TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 103
Query: 654 HPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713
H +T+ + + + L+F + ++W+D + + R+++ G ++ VV
Sbjct: 104 HRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---- 156
Query: 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773
G+ P GLA+DW+ ++ S S+I V NL+G +
Sbjct: 157 ----------------------GLESPGGLAVDWVHDKLYWTDSGT--SRIEVANLDGAH 192
Query: 774 QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
+ +L +L K +IA+ P++G ++W++ IE + MDG+ R +
Sbjct: 193 RKVLLW------QSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGRRIIADTH 244
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 1e-75
Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 24/301 (7%)
Query: 344 VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC 403
+ N++ +L + + +YW D + S ++D + S++ + + P+
Sbjct: 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDG 163
Query: 404 RPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDW 463
D WI N+YW +S L + VA G R+TL + PRAI +DP G ++WTDW
Sbjct: 164 LAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 221
Query: 464 DSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523
+ +I++ ++G +V ++ WPNG+TLD R+YW+D+K SI ++
Sbjct: 222 GTP-AKIKKGGLNGVDIYSLVTENI-----QWPNGITLDLLSGRLYWVDSKLHSISSIDV 275
Query: 524 DGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF 583
+G + +L + L HPF++A+FE+ V+WTD ++ AN+ GSDV L+ L P
Sbjct: 276 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 335
Query: 584 IYVNGVVKKSPCEMN--------NGNCSHLCLIG-----MNGTYKCQCPHVMKLMSDNKT 630
V P +N NG C +LCL + + C CP M L D ++
Sbjct: 336 DMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 395
Query: 631 C 631
C
Sbjct: 396 C 396
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 136 bits (342), Expect = 1e-34
Identities = 68/364 (18%), Positives = 124/364 (34%), Gaps = 35/364 (9%)
Query: 120 PACFNGEDEMFC-DEKQCLRSD-CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEA 177
P F + C D +C D C C N G+ C C L P C +
Sbjct: 26 PDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY 85
Query: 178 WGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK----NDSSPFVIFSNRHELRG 233
++ ++ + + T + S +D S +I S + L
Sbjct: 86 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDR 143
Query: 234 VDLRTFNVIALISSLKNT--IALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVV 291
+ + ++ +A+D + ++WTD + + A G +
Sbjct: 144 AHGVSSYDTVISRDIQAPDGLAVD----WIHSNIYWTDSVLGTVSVADTKGVKRK---TL 196
Query: 292 VQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWP 351
+ S + VD + +M+W W I+K G++G + LVT+NIQWP
Sbjct: 197 FRENGSKPRAIVVDPVHG--FMYWTDWGTPAK------IKKGGLNGVDIYSLVTENIQWP 248
Query: 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI 411
+ + +D LYW DS L+++ S+ V+G R +L + R+ P
Sbjct: 249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-----ILEDEKRLA----HPFSLAVF 299
Query: 412 GKNLYWVESNLDQIEVA-KLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRI 470
++W + + I A +L+G L + + +
Sbjct: 300 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSN 359
Query: 471 ERCS 474
C
Sbjct: 360 GGCQ 363
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 1e-22
Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 36/240 (15%)
Query: 593 SPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDL 652
C+ + CS LC + + G YKCQC +L K C+ S +F R
Sbjct: 41 DECQ-DPDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV---R 95
Query: 653 EHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFE 712
+ + T IP + + L+ + A+ +IYW+D + + +
Sbjct: 96 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--------- 146
Query: 713 FYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE 772
V+ I P GLA+DWI N++ S + V + +G
Sbjct: 147 -------------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGV 191
Query: 773 YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
+ T+ SK +I V PV G M+W++ I+ ++G ++V++
Sbjct: 192 KRKTLFREN------GSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTEN 244
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 245 bits (626), Expect = 1e-74
Identities = 105/323 (32%), Positives = 172/323 (53%), Gaps = 31/323 (9%)
Query: 325 SSDGGIEKAGM-HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
++ + +G+ + +V ++ +++ ++ ++YW D ++ + +E
Sbjct: 10 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 69
Query: 384 TVSFNLEVLGSDSRVGIPNCRPE----DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLI 439
+ + L S P+ D W+G+ LYW +S ++IEV+ L G R+ L
Sbjct: 70 VQNVVVSGLLS----------PDGLACD--WLGEKLYWTDSETNRIEVSNLDGSLRKVLF 117
Query: 440 AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGL 499
+++ PRAIALDP G ++WTDW + P+IER M G R +I+ ++ WPNGL
Sbjct: 118 WQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSSRFIIINSEI-----YWPNGL 171
Query: 500 TLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN 559
TLDY+ ++YW DAK + IH DG + V+ SL HPFA+ LFE+ +YWTDW T+
Sbjct: 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--KGSLPHPFALTLFEDILYWTDWSTH 229
Query: 560 SVIRANKWNGSDVTLIQRTLTQP-----FIYVNGVVKKSPCEMNNGNCSHLCLIG-MNGT 613
S++ NK+ G + I + P F +PC ++NG CSHLCL+ +
Sbjct: 230 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 289
Query: 614 YKCQCPHVMKLMSDNKTCQVADS 636
Y+C CP +KL+ + KTC+ +S
Sbjct: 290 YQCACPTGVKLLENGKTCKDGNS 312
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-41
Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 29/273 (10%)
Query: 219 SSPFVIFSNRHELRGVDLRT--FNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIY 276
S+P ++++NR +LR VD N ++ L++ A+DF + + +++W+DV ++ I
Sbjct: 3 SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIK 60
Query: 277 NATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH 336
++ VV +GL + +GLA DW+G+ LY W ++S IE + +
Sbjct: 61 RTEFNKT--ESVQNVVVSGLLSPDGLACDWLGEKLY--W-------TDSETNRIEVSNLD 109
Query: 337 GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSERTVSFNLEVLGSD 395
G R L + + P ++ +D + +YW D +E +DGS R + N
Sbjct: 110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN------- 162
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
S + PN D + + LYW ++ L+ I + L G R+ ++ G + P A+ L
Sbjct: 163 SEIYWPNGLTLD--YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--E 218
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488
+L+WTDW + I C+ + D+
Sbjct: 219 DILYWTDWSTH--SILACNKYTGEGLREIHSDI 249
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 96.7 bits (240), Expect = 5e-22
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
++++ R++R VD + + TI + + ++F ++ IYW+D +KR+
Sbjct: 6 LLLYANRRDLRLVDATNGKENA--TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 63
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+Q VV +G+ P GLA DW+ + ++ S
Sbjct: 64 FNKT-------------------------ESVQNVVVSGLLSPDGLACDWLGEKLYWTDS 98
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V NL+G + + E L + +IA+ P G M+W++ + IE
Sbjct: 99 E--TNRIEVSNLDGSLRKVLFWQE------LDQPRAIALDPSSGFMYWTDWGEVPK-IER 149
Query: 818 AFMDGTKRETVVSQK 832
A MDG+ R +++ +
Sbjct: 150 AGMDGSSRFIIINSE 164
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 7e-13
Identities = 43/254 (16%), Positives = 76/254 (29%), Gaps = 57/254 (22%)
Query: 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516
LL+ D + + + ++ + + IYW D +
Sbjct: 7 LLYANRRD-----LRLVDATNGKENAT----IVVGGLEDAAAVDFVFSHGLIYWSDVSEE 57
Query: 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVTL 574
+I ++ + + L P +A +YWTD TN + +N L
Sbjct: 58 AIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 116
Query: 575 IQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVA 634
+ L QP + G + GM+G+
Sbjct: 117 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--------------------- 155
Query: 635 DSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVK 694
II S +++ PN L D +K+YW D + N +
Sbjct: 156 SRFIIINS------------------------EIYWPNGLTLDYEEQKLYWADAKLNFIH 191
Query: 695 RSSIVGGQIQLVVD 708
+S++ G Q VV
Sbjct: 192 KSNLDGTNRQAVVK 205
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 4e-09
Identities = 33/196 (16%), Positives = 82/196 (41%), Gaps = 29/196 (14%)
Query: 658 HTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQ------------IQL 705
++ + + + SP+ L D +K+YWTD E N ++ S++ G +
Sbjct: 68 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 127
Query: 706 VVD------AVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP 759
+D ++ P +R+ + G +++++ I P+GL +D+ Q ++ A +
Sbjct: 128 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK- 186
Query: 760 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF 819
+ I NL+G + ++ +L ++ ++ + ++W++ + + +
Sbjct: 187 -LNFIHKSNLDGTNRQAVVK------GSLPHPFALTLF--EDILYWTDWSTHSI-LACNK 236
Query: 820 MDGTKRETVVSQKKYP 835
G + S P
Sbjct: 237 YTGEGLREIHSDIFSP 252
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 164 PDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKN 217
+ G CS C S Y+C C G +L + TCK + +
Sbjct: 260 QQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 4e-72
Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 26/260 (10%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
+E+ M + + L D ++YW D ++ + G E T
Sbjct: 17 LERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---- 72
Query: 390 EVLGSDSRVGIPNCRPE----DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMES 445
++ D PE D +G+ ++W +S LD+IEVAK+ G RR L + +
Sbjct: 73 -IIRQDLG------SPEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN 123
Query: 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQL 505
PR I DP G L+WTDW+ P+IE M G +R ++ + +L PNGLT D
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL-----GLPNGLTFDAFS 178
Query: 506 TRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRAN 565
+++ W+DA + + VL L +PFA+ + ++Y+TDW+TNSVI +
Sbjct: 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMD 235
Query: 566 KWNGSDVTLIQRTLTQPFIY 585
++ Q +Y
Sbjct: 236 LAISKEMDTFHP-HKQTRLY 254
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-28
Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 36/197 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIP--QVFSPNNLNFDAANKKIYWTDQEYNEVKR 695
++F++ +I + LE + L FD +K +YWTD + R
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 696 SSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIA 755
+S+ GG+ ++ + P G+A+D + + +F
Sbjct: 63 ASLHGGEPTTIIRQ--------------------------DLGSPEGIALDHLGRTIFWT 96
Query: 756 VSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTI 815
S +I V ++G + + L I PV+G ++W++ + I
Sbjct: 97 DSQL--DRIEVAKMDGTQRRVLFDT------GLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148
Query: 816 EMAFMDGTKRETVVSQK 832
E + MDGT R +
Sbjct: 149 ETSHMDGTNRRILAQDN 165
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 2e-19
Identities = 48/354 (13%), Positives = 89/354 (25%), Gaps = 109/354 (30%)
Query: 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516
LLF IER + L GL D +YW D
Sbjct: 4 LLFAQTGK-----IERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP 58
Query: 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVTL 574
SI + G + ++ L P IAL ++WTD + + + A L
Sbjct: 59 SIGRASLHGGEPTTIIRQ--DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116
Query: 575 IQRTLTQP----------FIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKL 624
L P +Y + N N M+GT
Sbjct: 117 FDTGLVNPRGIVTDPVRGNLYW--------TDWNRDNPKIET-SHMDGT----------- 156
Query: 625 MSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIY 684
+ + + +L P N L FDA + ++
Sbjct: 157 ----------NRRILAQD--------NLGLP----------------NGLTFDAFSSQLC 182
Query: 685 WTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLA 744
W D + + + + V++ G+ +P +
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKVLE---------------------------GLQYPFAVT 215
Query: 745 IDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWP 798
+ + + ++ +L + +++ I +
Sbjct: 216 SY----GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-----TRLYGITIAL 260
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 225 bits (573), Expect = 1e-66
Identities = 103/321 (32%), Positives = 152/321 (47%), Gaps = 24/321 (7%)
Query: 316 AFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 375
A ++ + + + L+ N++ +L + +++++W D L+ +
Sbjct: 40 ALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILR 99
Query: 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFR 435
++GS + + P D W+ LYW +S +IEVA L G R
Sbjct: 100 ANLNGSNVEEVV-------STGLESPGGLAVD--WVHDKLYWTDSGTSRIEVANLDGAHR 150
Query: 436 RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAW 495
+ L+ +E PRAIAL P G ++WTDW + PRIE SM G R +I L W
Sbjct: 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHL-----FW 204
Query: 496 PNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTD 555
PNGLT+DY R+YW+DAK I DG V+S L HPFAI +FE+ +YWTD
Sbjct: 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVFEDSLYWTD 262
Query: 556 WRTNSVIRANKWNGSDVTLIQRTLTQPFIYV-----NGVVKKSPCEMNNGNCSHLCLIGM 610
W T S+ ANK+ G + +I+ L P K+ C NNG C+HLCL
Sbjct: 263 WHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPS- 321
Query: 611 NGTYKCQCPHVMKLMSDNKTC 631
Y C CP + + ++ C
Sbjct: 322 GQNYTCACPTGFRKI-NSHAC 341
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 6e-44
Identities = 101/316 (31%), Positives = 160/316 (50%), Gaps = 33/316 (10%)
Query: 174 PCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRG 233
C G CSQ C S +++C C AGYEL PD +CK+ P ++F+NR ++R
Sbjct: 3 ECAEEGYCSQGCTN--SEGAFQCWCEAGYELRPDRRSCKA---LGPEPVLLFANRIDIRQ 57
Query: 234 VDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQ 293
V L+++L+N IALDF++ +VFW+DV D+I A L G SN++ VV
Sbjct: 58 VLPHRSEYTLLLNNLENAIALDFHH--RRELVFWSDVTLDRILRANLNG---SNVEEVVS 112
Query: 294 TGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353
TGL + GLAVDW+ LY W ++S IE A + G +R L+ ++++ P +
Sbjct: 113 TGLESPGGLAVDWVHDKLY--W-------TDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 163
Query: 354 LVIDYNQDILYWCDSHLNT-VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
+ + + +YW D +E+ +DGS R + + + + PN D + G
Sbjct: 164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-------THLFWPNGLTID--YAG 214
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER 472
+ +YWV++ IE A L G R+ +I+ + P AI + L+WTDW +K+ I
Sbjct: 215 RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDS--LYWTDWHTKS--INS 270
Query: 473 CSMSGEHRSVIVRVDL 488
+ I+R L
Sbjct: 271 ANKFTGKNQEIIRNKL 286
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 1e-24
Identities = 51/237 (21%), Positives = 99/237 (41%), Gaps = 40/237 (16%)
Query: 594 PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLE 653
C G CS C G ++C C +L D ++C+ + ++ R L
Sbjct: 3 ECA-EEGYCSQGC-TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 654 HPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713
H +T+ + + + L+F + ++W+D + + R+++ G ++ VV
Sbjct: 61 HRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---- 113
Query: 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773
G+ P GLA+DW+ ++ S S+I V NL+G +
Sbjct: 114 ----------------------GLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAH 149
Query: 774 QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
+ +L +L K +IA+ P++G ++W++ IE + MDG+ R +
Sbjct: 150 RKVLLW------QSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGRRIIAD 199
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 1e-25
Identities = 36/316 (11%), Positives = 95/316 (30%), Gaps = 46/316 (14%)
Query: 265 VFWTDVID-DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPS 323
VF+++ D ++Y + G+++ + + +++ S +
Sbjct: 28 VFFSNTNDNGRLYAMNIDGSNIHKLS----NDTAMYINADKNYVYYVRNNNQKITSQTFF 83
Query: 324 NSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWC---DSHLNTVESVRVDG 380
+ + + +G + L + S + +Y+ ++ +R+DG
Sbjct: 84 SYDRNSLCRIKRNGHGSTVLDPDPCIYAS-----LIGNYIYYLHYDTQTATSLYRIRIDG 138
Query: 381 SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA 440
E+ N + + + Y+ Q+ + Q
Sbjct: 139 EEKKKIKNHYLFTCN--------------TSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184
Query: 441 GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLT 500
+ P + +++ D + I +++ + V+ + N
Sbjct: 185 CNCYKPVVLD----DTNVYYMDVNRD-NAIVHVNINNPNPVVLT-----EANIEHYNV-- 232
Query: 501 LDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNS 560
Y Y + ++ V DG + I + +VY+TD+ +N
Sbjct: 233 --YGSLIFYQRGGDNPALCVVKNDGTGFKELAKGE-----FCNINVTSQYVYFTDFVSNK 285
Query: 561 VIRANKWNGSDVTLIQ 576
+ N + +Q
Sbjct: 286 EYCTSTQNPDTIKALQ 301
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 3e-09
Identities = 31/270 (11%), Positives = 80/270 (29%), Gaps = 41/270 (15%)
Query: 353 SLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
L + + ++ + + + ++ +DGS + N
Sbjct: 19 GLFCESDGEVFFSNTNDNGRLYAMNIDGSNIHK--------------LSNDTAMYINADK 64
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDME--------SPRAIALDPRFGLLFWTDW- 463
+Y+V +N +I R +L I +++ +
Sbjct: 65 NYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYD 124
Query: 464 DSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523
A + R + GE + I T + Y+ + K+ ++
Sbjct: 125 TQTATSLYRIRIDGEEKKKIKN----------HYLFTCNTSDRYFYYNNPKNGQLYRYDT 174
Query: 524 DGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF 583
+ + + + L + +VY+ D ++ I N + ++ + +
Sbjct: 175 ASQSEALFYDCNCY----KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY 230
Query: 584 IYVNGVVKKSPCEMNNGNCSHLCLIGMNGT 613
++ G+ LC++ +GT
Sbjct: 231 NVYGSLIFYQ----RGGDNPALCVVKNDGT 256
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 35/341 (10%), Positives = 82/341 (24%), Gaps = 89/341 (26%)
Query: 493 GAWPNGLTLDYQLTRIYWID-AKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHV 551
G N +++ + + ++ + DG + H + ++ I +N+V
Sbjct: 13 GNLYNAGLFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT-----AMYINADKNYV 67
Query: 552 YWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMN 611
Y+ + ++ + + LC I N
Sbjct: 68 YYVRNNNQKITSQTFFSY-------------------------------DRNSLCRIKRN 96
Query: 612 GTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSP 671
G L D +I + L Y I ++ +
Sbjct: 97 GHGSTV------LDPDPCIYASLIGNYIYYLHYDTQTATSL---YRIRIDGEEKKKIKNH 147
Query: 672 NNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQL 731
+ +++ Y+ + + ++ R L
Sbjct: 148 YLFTCNTSDRYFYYNNPKNGQL--------------------------YRYDTASQSEAL 181
Query: 732 VVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKI 791
D P L + + + IV N+ + I
Sbjct: 182 FYDCNCYKPVVLDDTNVY-----YMDVNRDNAIVHVNINNPNPVVLTEAN---------I 227
Query: 792 SSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
V+ +F+ + + DGT + + +
Sbjct: 228 EHYNVYG--SLIFYQRGGDN-PALCVVKNDGTGFKELAKGE 265
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 8e-22
Identities = 31/69 (44%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI W CD D+DC D SDE A + FTCN RCI + W CD DCG D
Sbjct: 17 CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG-RCININWRCDNDNDCG--D 73
Query: 63 TSDEDHCVN 71
SDE C +
Sbjct: 74 NSDEAGCSH 82
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-18
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRT 89
R C + F+C RCIP++W CD DCG D SDE+
Sbjct: 3 RTCPPNQFSCASG-RCIPISWTCDLDDDCG---------------DRSDESASCAYPTC- 45
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
+F C + CI CD + C + DE C
Sbjct: 46 -----FPLTQFTCNN--GRCININWRCDNDNDCGDNSDEAGC 80
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-08
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNT-- 148
SA C P++F C CIP + CD + C + DE C N
Sbjct: 1 SARTCPPNQFSCAS--GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRC 58
Query: 149 -PEGFMC 154
+ C
Sbjct: 59 ININWRC 65
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 8e-22
Identities = 31/67 (46%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI + CD D DC DGSDE C C + F CN + CIP WACD PDC D
Sbjct: 15 CISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCE--D 69
Query: 63 TSDEDHC 69
SDE
Sbjct: 70 GSDEWPQ 76
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-20
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 26/102 (25%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRT 89
+ C ++ F C+ +CI + CD DC D SDE +C
Sbjct: 1 KTCSQAEFRCH-DGKCISRQFVCDSDRDCL---------------DGSDEASCP------ 38
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C P F C TCIP+ CD +P C +G DE
Sbjct: 39 --VLTCGPASFQCNS--STCIPQLWACDNDPDCEDGSDEWPQ 76
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-08
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQC 136
C EF C D CI + VCD + C +G DE C C
Sbjct: 3 CSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASCPVLTC 42
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQ 28
CI W CD D DC+DGSDE + C+
Sbjct: 54 CIPQLWACDNDPDCEDGSDEWPQRCR 79
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 6e-16
Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 34/201 (16%)
Query: 8 WKCDGDEDCKDGS-DELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSD 65
+ D K GS E +D CDE C + +CI + CDG DC
Sbjct: 30 DRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCR------ 83
Query: 66 EDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPK-------ALVCDG 118
+ DE +CT P +F C + A
Sbjct: 84 ---------NGEDEKDCT--------LPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSS 126
Query: 119 EPACFNGEDEMFCDEKQCLRSDCHHDCYNTP-EGFMCVCPRDMYLQPDLITCSYLHPCEA 177
A F ++ + +D + P +G + + P E
Sbjct: 127 IAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPE-EDGLGLVGEF 185
Query: 178 WGTCSQDCEPSVSNNSYKCTC 198
G + + + C
Sbjct: 186 DGYNFDRFVGHIVHELSEEVC 206
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 6e-11
Identities = 30/157 (19%), Positives = 41/157 (26%), Gaps = 23/157 (14%)
Query: 57 DCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVC 116
+ L+D D + P+C+ HE C CI K VC
Sbjct: 25 ESLLDDRLDPKRIRKAGSLRHRVEELED--------PSCDEHEHQCGGDDPQCISKLFVC 76
Query: 117 DGEPACFNGEDEMFCDEKQCL---------------RSDCHHDCYNTPEGFMCVCPRDMY 161
DG C NGEDE C R H
Sbjct: 77 DGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIAD 136
Query: 162 LQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTC 198
L + S E+ + D E S +++
Sbjct: 137 LHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHP 173
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 1e-09
Identities = 17/158 (10%), Positives = 31/158 (19%), Gaps = 26/158 (16%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL-RCIPLAWACDGQPDCGLN 61
CI + CDG DC++G DE + C F + C
Sbjct: 69 CISKLFVCDGHNDCRNGEDE--KDCTLPTKAGDKFIGDVCFDHCTKR------------- 113
Query: 62 DTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPA 121
+ + S E D + + +
Sbjct: 114 ----RPEHMTLAFESSSIAAFFTPIADLHVHIEIESET-DEDESEVSMPADGEYSFADHR 168
Query: 122 CF-----NGEDEMFCDEKQCLRSDCHHDCYNTPEGFMC 154
+ + + +C
Sbjct: 169 LTIHPPEEDGLGLVGEFDGYNFDRFVGHIVHELSEEVC 206
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-15
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 25/95 (26%)
Query: 25 EHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTH 84
+ + C S F+C T C+P W CDG DC D +DE+
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCA---------------DGADESIA-- 44
Query: 85 SGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGE 119
C + + +
Sbjct: 45 --------AGCLYNSTGSGSGSGSTEELRVRLASH 71
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 9e-10
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDC 58
C+ W CDGD+DC DG+DE C + + + L
Sbjct: 21 VCVPERWLCDGDKDCADGADESIAAG----CLYNSTGSGSGSGSTEELRVRLASHLRK 74
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 9e-08
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPE 150
C P F C C+P+ +CDG+ C +G DE + +T E
Sbjct: 5 EGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEE 63
Query: 151 G-FMCVCP 157
Sbjct: 64 LRVRLASH 71
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 39/164 (23%), Positives = 50/164 (30%), Gaps = 34/164 (20%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
C + G +D D + + F C + I ACDG
Sbjct: 178 CTFTKRRTMGYQDFADVVCYTQKADS---PMDDFFQCV-NGKYISQMKACDG-------- 225
Query: 63 TSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPAC 122
+NDC D SDE C C+ F C+ CIP C+GE C
Sbjct: 226 -------INDCGDQSDELCCKA----------CQGKGFHCKS--GVCIPSQYQCNGEVDC 266
Query: 123 FNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDL 166
GEDE+ C S + R L P L
Sbjct: 267 ITGEDEVGCAGFA---SVAQEETEILTADMDAERRRIKSLLPKL 307
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 4e-12
Identities = 29/183 (15%), Positives = 42/183 (22%), Gaps = 36/183 (19%)
Query: 24 AEHCQDRKCDESHFTCNET--LRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETN 81
+C H ET C G D D ++ + +
Sbjct: 155 DLSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFA------------DVVCYTQKAD 202
Query: 82 CTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC-----DEKQC 136
F C + I + CDG C + DE+ C C
Sbjct: 203 S------------PMDDFFQCVN--GKYISQMKACDGINDCGDQSDELCCKACQGKGFHC 248
Query: 137 LRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCE-PSVSNNSYK 195
C Y C+ D S T D E + + K
Sbjct: 249 KSGVCIPSQYQCNGEVDCITGED--EVGCAGFASVAQEETEILTADMDAERRRIKSLLPK 306
Query: 196 CTC 198
+C
Sbjct: 307 LSC 309
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 5e-09
Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLN 61
I CDG DC D SDE C + C F C + CIP + C+G+ DC
Sbjct: 215 KYISQMKACDGINDCGDQSDE--LCC--KACQGKGFHCKSGV-CIPSQYQCNGEVDC--I 267
Query: 62 DTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHE 99
DE C + +ET +
Sbjct: 268 TGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLP 305
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-15
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 122 CFNGEDEMFC-DEKQCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAW 178
+CL ++ C + C + G+ C+CP L C + C+
Sbjct: 17 TTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDP 75
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCK 212
TCSQ C YKC C G++L+P CK
Sbjct: 76 DTCSQLCVNLE--GGYKCQCEEGFQLDPHTKACK 107
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-11
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 142 HHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAW-GTCSQDCEPSVSNNSYKCTCHA 200
HH ++ + ++Y Q + C G CS C Y+C C
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQ----GAMGTNECLDNNGGCSYVCNDLK--IGYECLCPD 56
Query: 201 GYELEPDMFTC 211
G++L C
Sbjct: 57 GFQLVAQR-RC 66
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C+ + CS LC + + G YKCQC +L K C+
Sbjct: 72 CQDPDT-CSQLC-VNLEGGYKCQCEEGFQLDPHTKACK 107
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C NNG CS++C + Y+C CP +L++ + C+
Sbjct: 32 CLDNNGGCSYVC-NDLKIGYECLCPDGFQLVAQ-RRCE 67
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217 | Back alignment and structure |
|---|
Score = 71.5 bits (174), Expect = 3e-14
Identities = 29/191 (15%), Positives = 44/191 (23%), Gaps = 34/191 (17%)
Query: 8 WKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDE 66
D D+ + ++ CDE C + CI CDG+ DC D SDE
Sbjct: 30 LTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCR--DGSDE 87
Query: 67 DHCV------------------NDCTDWSDETNCTH----SGNRTISAPACEPHEFDCQD 104
D C D + + +
Sbjct: 88 DPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYEL 147
Query: 105 VLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQP 164
G E + + Q D +N + C
Sbjct: 148 DEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICD-FNLGDDDHADC-------- 198
Query: 165 DLITCSYLHPC 175
++ S L C
Sbjct: 199 KIVVPSSLFVC 209
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 3e-09
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 59 GLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDG 118
+ + ++ D + + C+ HE +C+ + CI L CDG
Sbjct: 22 DIEEEYNKLTHDVDKKTIRQLKARISN----LEEHHCDEHESECRGDVPECIHDLLFCDG 77
Query: 119 EPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCP 157
E C +G DE C + + + +
Sbjct: 78 EKDCRDGSDED--------PETCSLNITHVGSSYTGLAT 108
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 4e-14
Identities = 91/667 (13%), Positives = 176/667 (26%), Gaps = 201/667 (30%)
Query: 13 DEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVN- 71
+ DCKD D + D + + + L W + + + +E +N
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 72 ---------DCTDWSDET-------NCTHSGNRTISA---PACEPHEFDCQDVLRTCIPK 112
+ S T + ++ N+ + +P+ LR + +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----KLRQALLE 146
Query: 113 A-----LVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLI 167
++ DG G K + D C ++
Sbjct: 147 LRPAKNVLIDGVLGS--G--------KTWVALDVCLS-----YKVQCKMDFKIF------ 185
Query: 168 TCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSN 227
W P + + +++P+ + S N I
Sbjct: 186 ----------WLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSN------IKLR 226
Query: 228 RHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNA------TLI 281
H ++ R + L + L +V + K +NA L+
Sbjct: 227 IHSIQAELRRLLKSKPYENCL---LVLL-------------NVQNAKAWNAFNLSCKILL 270
Query: 282 -GNSLSNIDVV------------VQTGLSTAEGLAV--DWIGKNLYMFWAFWSLSPSNSS 326
D + L+ E ++ ++ L P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ------DL-PREVL 323
Query: 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYW----CDSHLNTVE-SVRV-DG 380
+P I + + D W CD +E S+ V +
Sbjct: 324 TT------------NPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 381 SE-RTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIE--VAKLSGQFRRT 437
+E R + L V + + P L +L W + + V KL + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHI------PTILL----SLIWFDVIKSDVMVVVNKL---HKYS 415
Query: 438 LIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPN 497
L+ + I++ + + K ++ HRS++ ++ + +
Sbjct: 416 LVEKQPKEST-ISIP---SIYL----ELKVKLENEYAL---HRSIVDHYNIP--KTFDSD 462
Query: 498 GLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWR 557
L Y Y + G HH+ H + LF V+ D+R
Sbjct: 463 DLIPPYLDQYFYS------------HIG--HHLKNIEHPER-----MTLFRM-VF-LDFR 501
Query: 558 -TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSP---------------CEMNNGN 601
IR + + I TL Q Y + P E N
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 602 CSHLCLI 608
+ L+
Sbjct: 562 SKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 4e-08
Identities = 74/491 (15%), Positives = 134/491 (27%), Gaps = 170/491 (34%)
Query: 254 LDFYYTPTA-NMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLY 312
D + + ID I + + +L ++ + + + N Y
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-Y 91
Query: 313 MF----WAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYN--------- 359
F PS + M+ E R L N + YN
Sbjct: 92 KFLMSPIKTEQRQPSMMTR-------MYIEQRDRLYNDN-----QVFAKYNVSRLQPYLK 139
Query: 360 -QDILYWCDSHLNTVESVRVDG---SERTVSFNLEVLGSDSR----------VGIPNC-R 404
+ L L ++V +DG S +T L+V S + + NC
Sbjct: 140 LRQALL----ELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 405 PEDNLWIGKNLYW-VESNLDQ---------IEVAKLSGQFRRTLIAGDMESPRA-IALDP 453
PE L + + L + ++ N + + + + RR L + L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLVLL- 251
Query: 454 RFGLLFWTD-WDSKAPRIE----RCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRI 508
+ ++KA C ++ LLT+R Q+T
Sbjct: 252 --------NVQNAKA--WNAFNLSC-----------KI-LLTTR---------FKQVT-- 278
Query: 509 YWIDAKSDSIHTVTYDGKDHHVVLSNH-DSLTHPFAIALFENHVYWTDWRTNSVIRANKW 567
D + T H+ L +H +LT +L
Sbjct: 279 -------DFLSAATT----THISLDHHSMTLTPDEVKSLLLK------------------ 309
Query: 568 NGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIG-----MNGTYKCQCPHVM 622
Y++ + P E+ N L +I T+ +
Sbjct: 310 -----------------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NWK 348
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
+ D T + S + P E R + + VF P + +
Sbjct: 349 HVNCDKLTTIIESS--LNVLEPAEYR------KMFDRL------SVF-PPSAHIPTILLS 393
Query: 683 IYWTDQEYNEV 693
+ W D ++V
Sbjct: 394 LIWFDVIKSDV 404
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-12
Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 27/154 (17%)
Query: 7 YWKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSD 65
K D + + + + + C++ F C CI CDG DC D
Sbjct: 29 AEKIDPEHFVSEIDARVTK-IEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED 87
Query: 66 EDHCVN----------------DCTDWSDETNCTH-SGNRTISAPACEPH------EFDC 102
D C C D + ++
Sbjct: 88 PDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELE 147
Query: 103 QDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQC 136
+ + + G + + +
Sbjct: 148 RHGE--NVTSSFNAKGYYNFASRRLILLPTDDHD 179
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 5e-09
Identities = 26/169 (15%), Positives = 36/169 (21%), Gaps = 22/169 (13%)
Query: 67 DHCVNDCTDWSDETNCTHSGNRTISA---------PACEPHEFDCQDVLRTCIPKALVCD 117
D + DE + CE F C + CI LVCD
Sbjct: 16 DRIIEKLRTKLDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCD 75
Query: 118 GEPACFNG--EDEMFCDEKQCLRSDCH------HDCYNTPEGFMCVCPRDMYLQPDLITC 169
G C N ED CD + H C + + +
Sbjct: 76 GHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTAR 135
Query: 170 SYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKND 218
+L + S Y +D
Sbjct: 136 IWLRALVESELERHGENVTSS-----FNAKGYYNFASRRLILLPTDDHD 179
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 6e-12
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNN--SYKCTC 198
C N P F C CP +C + C C+Q C N Y C C
Sbjct: 14 GTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCV----NYPGGYTCYC 68
Query: 199 HA--GYELEPDMFTCK 212
G++L D +C+
Sbjct: 69 DGKKGFKLAQDQKSCE 84
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 595 CEMNNGNC-SHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C + C + +C + G ++C+CP + +K+C+
Sbjct: 6 CSLKPSICGTAVC-KNIPGDFECECPEGYRYNLKSKSCE 43
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-12
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVN 71
+ + C S F+C T C+P W CDG DC D +DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCA--DGADESIAAG 44
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-07
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C P F C C+P+ +CDG+ C +G DE
Sbjct: 3 EGKTCGPSSFSCPGTHV-CVPERWLCDGDKDCADGADESIA 42
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-06
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 2 TCIIAYWKCDGDEDCKDGSDEL 23
C+ W CDGD+DC DG+DE
Sbjct: 19 VCVPERWLCDGDKDCADGADES 40
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 7e-11
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C + F C + CI + CDG DC D SDE C
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCR--DNSDEAGC 42
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-07
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEK 134
C +F C D +CI CDG C + DE C +
Sbjct: 7 CTSAQFKCADG-SSCINSRYRCDGVYDCRDNSDEAGCPTR 45
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 2 TCIIAYWKCDGDEDCKDGSDEL 23
+CI + ++CDG DC+D SDE
Sbjct: 19 SCINSRYRCDGVYDCRDNSDEA 40
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 8e-11
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C CIPL W CDG DC D+SDE C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCM--DSSDEKSC 39
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-07
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCD 132
C EF C+ CIP CDG+ C + DE C+
Sbjct: 2 GGCHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCE 40
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-06
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHC 27
CI W+CDGD DC D SDE + C
Sbjct: 16 LCIPLRWRCDGDTDCMDSSDE--KSC 39
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 32/216 (14%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410
P + + ++ ++ N + + +DG + P+ + L
Sbjct: 17 PYGITVS-DKGKVWITQHKANMISCINLDGKITEYP-----------LPTPDAKVMC-LT 63
Query: 411 IGK--NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAP 468
I +++ E+ ++I G + + +P I P G +++T+ +
Sbjct: 64 ISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGN-- 120
Query: 469 RIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH 528
RI R + G+ +R L ++G++P+ +TL +++ + ++++I +T G
Sbjct: 121 RIGRITDDGK-----IREYELPNKGSYPSFITLGSD-NALWFTENQNNAIGRITESGDIT 174
Query: 529 HVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIR 563
+ + P I ++ +++ + N + R
Sbjct: 175 EFKIP--TPASGPVGITKGNDDALWFVEIIGNKIGR 208
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 45/263 (17%), Positives = 91/263 (34%), Gaps = 39/263 (14%)
Query: 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSN 324
V++T+ +KI T G + S G+ G +++ +
Sbjct: 70 VWFTENAANKIGRITKKGIIKE---YTLPNPDSAPYGITEGPNG-DIWF---------TE 116
Query: 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384
+ I + G+ R + +PS + + + + L++ ++ N + R+ S
Sbjct: 117 MNGNRIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAI--GRITESGDI 173
Query: 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGK--NLYWVESNLDQIEVAKLSGQFRRTLIAGD 442
F + S P + G L++VE ++I SG+ I
Sbjct: 174 TEFKIPTPAS---------GPVG-ITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTP 223
Query: 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502
P AI L++T+W + +I R + + + + + A P+G+ D
Sbjct: 224 NARPHAITAGAG-IDLWFTEWGAN--KIGRLTSNNI-----IEEYPIQIKSAEPHGICFD 275
Query: 503 YQLTRIYWIDAKSDSIHTVTYDG 525
W + D I +T
Sbjct: 276 ---GETIWFAMECDKIGKLTLIK 295
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489
+ + + + P I + + G ++ T + I ++ G+ L
Sbjct: 1 MEFKLQELNLTNQDTGPYGITVSDK-GKVWITQHKAN--MISCINLDGKITEY-----PL 52
Query: 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FE 548
+ A LT+ +++ + ++ I +T G + + + P+ I
Sbjct: 53 PTPDAKVMCLTISSD-GEVWFTENAANKIGRITKKGI--IKEYTLPNPDSAPYGITEGPN 109
Query: 549 NHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVV 590
+++T+ N + R D + + L Y + +
Sbjct: 110 GDIWFTEMNGNRIGRIT----DDGKIREYELPNKGSYPSFIT 147
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 27/218 (12%)
Query: 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408
P + +++ N + +D S R F + + +
Sbjct: 20 SGPYGITSS-EDGKVWFTQHKANKI--SSLDQSGRIKEFEVPTPDA---------KVMC- 66
Query: 409 LWIGK--NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSK 466
L + ++++ E+ ++I G F + P I G +++T +
Sbjct: 67 LIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGD 125
Query: 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526
RI + + G I D L ++G++P +TL +++ + +++SI +T GK
Sbjct: 126 --RIGKLTADGT----IYEYD-LPNKGSYPAFITLGSD-NALWFTENQNNSIGRITNTGK 177
Query: 527 DHHVVLSNHDSLTHPFAIALFEN-HVYWTDWRTNSVIR 563
L + P I + +++ + N + R
Sbjct: 178 LEEYPLP--TNAAAPVGITSGNDGALWFVEIMGNKIGR 213
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 36/239 (15%), Positives = 82/239 (34%), Gaps = 34/239 (14%)
Query: 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSN 324
+++T+ +KI + G + S G+ G +++ +
Sbjct: 75 IWFTENGANKIGKLSKKGGFTE---YPLPQPDSGPYGITEGLNG-DIWF---------TQ 121
Query: 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384
+ I K G + +P+ + + + + L++ ++ N++ + G
Sbjct: 122 LNGDRIGKLTADGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEE 180
Query: 385 VSFNLEVLGSDSR-VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDM 443
+ + VGI + LW VE ++I +G+ I
Sbjct: 181 YPLP----TNAAAPVGI-TSGNDGALWF------VEIMGNKIGRITTTGEISEYDIPTPN 229
Query: 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502
P AI +++T+W + +I R + ++ L + A P+G+T
Sbjct: 230 ARPHAITAGKN-SEIWFTEWGAN--QIGRITNDNT-----IQEYQLQTENAEPHGITFG 280
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 21/165 (12%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 427 VAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486
A ++ ++ P I G +++T + +I SG +
Sbjct: 3 EAWMNFYLEEFNLSIPDSGPYGITSSED-GKVWFTQHKAN--KISSLDQSGRIKEF---- 55
Query: 487 DLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546
+ + A L + I++ + ++ I ++ G + P+ I
Sbjct: 56 -EVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKKGG--FTEYPLPQPDSGPYGITE 111
Query: 547 FEN-HVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVV 590
N +++T + + + +D T+ + L Y +
Sbjct: 112 GLNGDIWFTQLNGDRIGKLT----ADGTIYEYDLPNKGSYPAFIT 152
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-10
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
QD KC +F C +C+P C+G DCG + +DED+C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCG--NQADEDNC 42
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C F C + + C+P+ L C+G C N DE C
Sbjct: 5 VKCSLGYFPCGN-ITKCLPQLLHCNGVDDCGNQADEDNC 42
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 9e-05
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHC 27
C+ C+G +DC + +DE ++C
Sbjct: 19 KCLPQLLHCNGVDDCGNQADE--DNC 42
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-10
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
++C++ F C RCIP W CD DC D SDED C
Sbjct: 3 GPAKECEKDQFQCRNE-RCIPSVWRCDEDDDCL--DHSDEDDC 42
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDE 133
A CE +F C++ CIP CD + C + DE C +
Sbjct: 4 PAKECEKDQFQCRN--ERCIPSVWRCDEDDDCLDHSDEDDCPK 44
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-06
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI + W+CD D+DC D SDE + C
Sbjct: 20 CIPSVWRCDEDDDCLDHSDE--DDC 42
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-10
Identities = 13/83 (15%), Positives = 19/83 (22%), Gaps = 7/83 (8%)
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGT-CSQDCEPSV 189
C C + + CS +AWGT C +
Sbjct: 44 TRSGNC---YLDIRPRGDNGDTACSNEIGVGVSKASCCCS---LGKAWGTPCEMCPAVNT 97
Query: 190 SNNSYKCTCHAGYELEPDMFTCK 212
S C G+ P +
Sbjct: 98 SEYKILCPGGEGFRPNPITVILE 120
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 7e-10
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHA 200
+C NTP ++C CP D L P + C + N C+
Sbjct: 13 ISGNCVNTPGSYICDCPPDFELNPTRVGC--VDTRSGNCYLDIRPRG--DNGDTACSNEI 68
Query: 201 GYELEPDMFTC 211
G + C
Sbjct: 69 GVGVSKASCCC 79
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 8/86 (9%)
Query: 131 CDEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPS 188
C + + C + +C P + + C+ C+
Sbjct: 79 CSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGL---CQGG 135
Query: 189 VSNN---SYKCTCHAGYELEPDMFTC 211
N S++C C GY L D C
Sbjct: 136 KCINTFGSFQCRCPTGYYLNEDTRVC 161
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 9e-10
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 27 CQDRKCDESHFTCNETL----RCIPLAWACDGQPDCGLNDTSDEDHC 69
+ C F C+E C P W CDG PDC D DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD--DGRDEWGC 46
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 5e-08
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 91 SAPACEPHEFDCQDVLR---TCIPKALVCDGEPACFNGEDEMFC 131
+C P +F C + C P+ +CDG P C +G DE C
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-05
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 2 TCIIAYWKCDGDEDCKDGSDEL 23
C W CDG DC DG DE
Sbjct: 23 ECYPQDWLCDGHPDCDDGRDEW 44
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-09
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCV 70
+C F C RCI W CDG DC D SDE +
Sbjct: 4 PQCQPGEFACA-NSRCIQERWKCDGDNDCL--DNSDEAPAL 41
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-07
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI WKCDGD DC D SDE C
Sbjct: 18 CIQERWKCDGDNDCLDNSDEAPALC 42
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-06
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
S P C+P EF C + CI + CDG+ C + DE
Sbjct: 2 SPPQCQPGEFACAN--SRCIQERWKCDGDNDCLDNSDEAPA 40
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-09
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C NG C C C+C L++D +C
Sbjct: 8 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 45
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-05
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 165 DLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK 216
D + C + G C Q C + C CH GY L D +C +
Sbjct: 4 DQLICVNEN-----GGCEQYCSDH-TGTKRSCRCHEGYSLLADGVSCTPTVE 49
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-09
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTD 75
C + F CN + RCIP W CDG DCG D SDE H +CT+
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDCG--DYSDETHA--NCTN 43
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDR 30
CI +W CDGD DC D SDE +C ++
Sbjct: 17 CIPEHWTCDGDNDCGDYSDETHANCTNQ 44
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-06
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 92 APACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCD 132
+ +C +F C CIP+ CDG+ C + DE +
Sbjct: 2 SHSCSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDETHAN 40
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-09
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 CDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDEDHCVN 71
C +C + +CIP++W CDG+ DC DE++C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCD--SGEDEENCGN 39
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-08
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C HE C CIP + CDGE C +GEDE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-05
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQD 29
CI W+CDG+ DC G DE E+C +
Sbjct: 15 CIPVSWRCDGENDCDSGEDE--ENCGN 39
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-09
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 121 ACFNG----EDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176
C G E + C ++ C DC C CP Y+ D C+ + CE
Sbjct: 27 VCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QASCECPEG-YILDDGFICTDIDECE 84
Query: 177 AWGTCSQDCEPSVSNNSYKCTCHAGYELEP-DMFTC 211
G CS C +++C C L C
Sbjct: 85 NGGFCSGVCHNLPG--TFECICGPDSALAGQIGTDC 118
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-09
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C + NG C C + C C +L + K+C+ A
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP 43
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-05
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 168 TCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK 216
TC+ + G C Q C+ S +N C+C GY L + +C+
Sbjct: 1 TCNIKN-----GRCEQFCKNSA-DNKVVCSCTEGYRLAENQKSCEPAVP 43
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-09
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C CI +W CDG PDC D SDE++C
Sbjct: 2 CSAFEFHCLSG-ECIHSSWRCDGGPDCK--DKSDEENC 36
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C EF C CI + CDG P C + DE C
Sbjct: 2 CSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI + W+CDG DCKD SDE E+C
Sbjct: 14 CIHSSWRCDGGPDCKDKSDE--ENC 36
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-09
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 31 KCDESHFTCNETL----RCIPLAWACDGQPDCGLNDTSDEDHC 69
+C F C+E C P W CDG PDC D DE C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD--DGRDEWGC 44
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-07
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 93 PACEPHEFDCQDVLRT---CIPKALVCDGEPACFNGEDEMFCDE 133
C P +F C + C P+ +CDG P C +G DE C
Sbjct: 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-05
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 3 CIIAYWKCDGDEDCKDGSDEL 23
C W CDG DC DG DE
Sbjct: 22 CYPQDWLCDGHPDCDDGRDEW 42
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 8e-09
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C NG C C C+C L++D +C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-05
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK 216
G C Q C + C CH GY L D +C +
Sbjct: 7 GGCEQYCSDH-TGTKRSCRCHEGYSLLADGVSCTPTVE 43
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-08
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVAD 635
C ++NG C C +C C H L D+K+C +
Sbjct: 1 CSLDNGGCDQFCR-EERSEVRCSCAHGYVLGDDSKSCVSTE 40
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C Q C + +C+C GY L D +C S
Sbjct: 6 GGCDQFCREER--SEVRCSCAHGYVLGDDSKSCVS 38
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 37.3 bits (87), Expect = 7e-04
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
C C C C L D +C
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSC 36
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQP-DLITCSYLHPCEAW--GTCSQDCEPSVSNN--SYK 195
C NTP F C C + C + C+ C N SY+
Sbjct: 14 GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCH----NTEGSYR 69
Query: 196 CTCHAGYELEPDMFTC 211
C C G++L P++ C
Sbjct: 70 CECPPGHQLSPNISAC 85
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-07
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 132 DEKQCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLIT----CSYLHPCEAWGTCSQDC 185
DE C D H C NT + C CP L + CS +PC + C
Sbjct: 6 DE--CKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPC-----GNGTC 58
Query: 186 EPSVSNN--SYKCTCHAGYELEPDMFTCK 212
+ N ++CTC G+E M TC+
Sbjct: 59 K----NVIGGFECTCEEGFEPG-PMMTCE 82
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-07
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVAD 635
C ++NG+C C + C C L + K C
Sbjct: 4 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKACIPTG 43
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-05
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C Q C NS C+C GY L + C
Sbjct: 9 GDCDQFCHEEQ--NSVVCSCARGYTLADNGKACIP 41
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 8e-04
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175
C C+ +C C R L + C P
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 24/114 (21%)
Query: 116 CDGEPACFNGEDEMFC-------------DEKQCLRSDCHHD--CYNTPEGFMCVCPRD- 159
C E + E+F D QC S C + C + + C C
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 160 --MYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ L + C + NS C+C GY L + C
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHE------EQNSVVCSCARGYTLADNGKAC 119
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 14/118 (11%)
Query: 99 EFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPR 158
+ C + V DG C + + C T +C +
Sbjct: 38 KTICIET-IKGTCWQTVIDGR--CEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGK 94
Query: 159 DMYLQPDLIT-----CSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
C G C + S+KC C +G L+ C
Sbjct: 95 GYSRIKGTQCEDIDECEVFPGVCKNGLCVN------TRGSFKCQCPSGMTLDATGRIC 146
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 26/103 (25%)
Query: 132 DEKQCLRS-DCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAW-GTCSQDCEPSV 189
DE C S + C N+P F+C C + L P C W CE ++
Sbjct: 5 DE--CESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 190 ---------------------SNNSYKCTCHAGYELEPDMFTC 211
+ C GY C
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRI-KGTQC 104
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 24/138 (17%), Positives = 36/138 (26%), Gaps = 37/138 (26%)
Query: 38 TCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEP 97
C ET++ DG+ + +N + + C + C
Sbjct: 40 ICIETIKGTCWQTVIDGRCEININGATLKSQCCSSL-------GAAWGSP-------CTL 85
Query: 98 HEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC---DEKQCLRSD---CHHDCYNTPEG 151
+ D C ++ C DE C + C NT
Sbjct: 86 CQVDP-----IC----------GKGYSRIKGTQCEDIDE--CEVFPGVCKNGLCVNTRGS 128
Query: 152 FMCVCPRDMYLQPDLITC 169
F C CP M L C
Sbjct: 129 FKCQCPSGMTLDATGRIC 146
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 8e-07
Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 27/224 (12%)
Query: 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC---RP 405
+ +L + ++ + + + S+ DG+++ + G +
Sbjct: 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHATV---------EGKVSGLAFTS 81
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
+L W ++ + + K G L D I DS
Sbjct: 82 NGDLVAT---GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTA--DS 135
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLT-----SRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520
I + S+ + +L S NGL +Y + + +
Sbjct: 136 YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYVSNTEKMLLLR 193
Query: 521 VTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIR 563
+ D D T+ A E ++Y NSV+R
Sbjct: 194 IPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVR 237
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 48/333 (14%), Positives = 100/333 (30%), Gaps = 32/333 (9%)
Query: 259 TPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFW 318
+ V++ D + +T+IG + + + L + V + +
Sbjct: 44 DKSKVKVYFVD--EAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKVI-VDGKEVTTDGTF 100
Query: 319 SLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRV 378
+ + A G + L + ++ + + + V + V
Sbjct: 101 KYEQAQNVSTISGSASKDGNDDGDLASAKFKYMWGIAAV-GNNTVLAYQRDDPRVRLISV 159
Query: 379 DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTL 438
D ++ T G V R W G + +V + L
Sbjct: 160 DDNKVTTVHPGFK-GGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGW-----APTRIGQL 213
Query: 439 IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAW--P 496
+ A+ALD L++ D + R + ++I +++L S G P
Sbjct: 214 GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---TLIKQLELSGSLGTNPGP 270
Query: 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDS-----------LTHPFAIA 545
+ + Y D S++ +T DG+ S P +
Sbjct: 271 YLIYYFVD-SNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMT 329
Query: 546 LFEN-HVYWTDWRTNSVIRANKWNGSD--VTLI 575
+ E+ + Y D +R K + D V+ +
Sbjct: 330 VDEDGNFYIVDGFKGYCLR--KLDILDGYVSTV 360
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 132 DEKQCLRSDC--HHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSV 189
+ S C H C + F C C + S+L+ G C+ C V
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEV 72
Query: 190 SNNSYKCTCHAGYELEPDMFTC 211
+C+C GY+L D+ C
Sbjct: 73 --GWRRCSCAPGYKLGDDLLQC 92
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 27/102 (26%)
Query: 127 DEMFCDEKQCLRSDCHHDCYNTPEGFMCVCP--------RDMYLQPDLITC-------SY 171
+E C + DC+NT + CVC + TC S
Sbjct: 45 NE--CATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 172 LHPCEAWGTCSQDCEPSVSNN--SYKCTCHAGYELEPDMFTC 211
H C++ C N SY C C G++ +
Sbjct: 103 QHQCDSSTVCF--------NTVGSYSCRCRPGWKPRHGIPNN 136
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 5e-06
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 24/114 (21%)
Query: 116 CDGEPACFNGEDEMFC-------------DEKQCLRSDCHHD--CYNTPEGFMCVCPRD- 159
C E + E+F D QC S C + C + + C C
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 160 --MYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ L + C + NS C+C GY L + C
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHE------EQNSVVCSCARGYTLADNGKAC 119
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186 | Back alignment and structure |
|---|
Score = 47.0 bits (110), Expect = 6e-06
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 2/88 (2%)
Query: 126 EDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQP-DLITCSYLHPCEAWG-TCSQ 183
++ +C + + + C C P D C+ +
Sbjct: 90 VLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTD 149
Query: 184 DCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ Y C C G+ + + C
Sbjct: 150 NEVCXNVEGVYXCQCMEGFTFDXEXNVC 177
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186 | Back alignment and structure |
|---|
Score = 42.7 bits (99), Expect = 2e-04
Identities = 18/169 (10%), Positives = 34/169 (20%), Gaps = 17/169 (10%)
Query: 8 WKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDED 67
+ C++ +E C E + C L + +
Sbjct: 33 LVHLSENTCEEX-NECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVL 91
Query: 68 HCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGED 127
+ + C I + C +C + +
Sbjct: 92 DVC-QYXNCGESGECIVEYLSEIQSAGC------------SCAIGXVPNPEDEXXCTXTG 138
Query: 128 EMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176
E C + C N + C C + C H
Sbjct: 139 ETACQLXCN---TDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHH 184
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 25/118 (21%), Positives = 35/118 (29%), Gaps = 18/118 (15%)
Query: 107 RTCIPKALVCDGEPACF------NGEDEMFCDEK--QCLRSDCHHD--CYNTPEGFMCVC 156
R C + C E A + QC S C + C + + ++C C
Sbjct: 15 RECKEE--QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC 72
Query: 157 PRDMYL---QPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ + E G C Q C C CH GY L D +C
Sbjct: 73 LPAFEGRNCETHKDDQL-ICVNEN-GGCEQYCSDHT-GTKRSCRCHEGYSLLADGVSC 127
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-05
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 174 PCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214
+ C C V Y C+C GYEL+ D +C+++
Sbjct: 15 EEDPQPQCQHLCHNYVG--GYFCSCRPGYELQEDRHSCQAE 53
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 7e-04
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 593 SPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
S E C HLC G Y C C +L D +CQ
Sbjct: 13 SGEEDPQPQCQHLC-HNYVGGYFCSCRPGYELQEDRHSCQA 52
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 7e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
C H C+N G+ C C LQ D +C
Sbjct: 22 CQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554 | Back alignment and structure |
|---|
Score = 43.1 bits (100), Expect = 3e-04
Identities = 29/165 (17%), Positives = 41/165 (24%), Gaps = 14/165 (8%)
Query: 8 WKCDGDE-DCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE 66
C GD D S C + F C ET RC+ C+G DC SDE
Sbjct: 42 TICSGDIWDQASCSSS--TTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDG--SDE 97
Query: 67 DHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGE 126
D C + + S I ++ T V D E
Sbjct: 98 DDCEDVRA-----IDEDCSQYEPIPGSQKAALGYNI----LTQEDAQSVYDASYYGGQCE 148
Query: 127 DEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171
+ ++ Y + P +
Sbjct: 149 TVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLKYHFEALADT 193
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 135 QCLRSDCHHD--CYNTPEGFMCVCPRD---MYLQPDLITCSYLHPCEAWGTCSQDCEPSV 189
QC + C + C + + C C + D TC+ + C
Sbjct: 50 QCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD-ATCNIKNGR-CKQFCKTG----- 102
Query: 190 SNNSYKCTCHAGYELEPDMFTC 211
+++ C+C GY L PD +C
Sbjct: 103 ADSKVLCSCTTGYRLAPDQKSC 124
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.96 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.94 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.94 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.94 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.91 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.85 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.84 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.83 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.82 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.82 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.81 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.81 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.81 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.77 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.77 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.77 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.76 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.76 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.75 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.74 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.74 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.7 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.69 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 99.63 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.63 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.61 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.6 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 99.59 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.58 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.58 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.56 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.56 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.55 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 99.55 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 99.52 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.51 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.5 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.49 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.45 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.44 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.43 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.43 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.42 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.42 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.41 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.4 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.39 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.39 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.38 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.37 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.37 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.35 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.33 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.31 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.3 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.3 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.29 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.29 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.27 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.27 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 99.26 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.26 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.26 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.25 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.22 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.22 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.21 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.21 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.18 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.18 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.17 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.16 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.15 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.12 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.12 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.12 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.11 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.1 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.1 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.09 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.09 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 99.09 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.07 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 99.06 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.05 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.05 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.02 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.02 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 99.01 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.01 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.99 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.99 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.99 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.98 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 98.97 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 98.94 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 98.93 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.92 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.89 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.89 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 98.88 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 98.84 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.83 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.81 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.81 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.79 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.78 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 98.78 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.78 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 98.77 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 98.77 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 98.77 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 98.76 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 98.75 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.75 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 98.74 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 98.74 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 98.73 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 98.73 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 98.72 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 98.72 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.68 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 98.68 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.68 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 98.67 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 98.66 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 98.66 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 98.66 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.64 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.64 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 98.63 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 98.6 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.6 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 98.59 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 98.57 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 98.56 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.55 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 98.55 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.53 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 98.52 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 98.5 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.5 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 98.49 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 98.48 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 98.47 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.44 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 98.42 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.42 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.39 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 98.38 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 98.37 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 98.37 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.35 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 98.34 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 98.34 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 98.33 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.32 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 98.29 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.27 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.26 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.25 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.23 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 98.22 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 98.22 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.22 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 98.22 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.21 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.2 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.19 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 98.19 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.18 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 98.15 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.14 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.13 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 98.13 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 98.12 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.12 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 98.12 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 98.12 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 98.12 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.11 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.11 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 98.1 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 98.1 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 98.09 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 98.08 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.08 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 98.07 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 98.06 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 98.06 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 98.05 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 98.05 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 98.05 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 98.04 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 98.03 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.01 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.99 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 97.98 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 97.97 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 97.95 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 97.93 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 97.92 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 97.9 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.9 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.9 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 97.9 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 97.89 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.89 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.88 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.88 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 97.88 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 97.86 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 97.83 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.81 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 97.81 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.77 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.77 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 97.75 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 97.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.71 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.7 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.68 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.65 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 97.63 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.59 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.55 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 97.53 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 97.51 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.47 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.44 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 97.43 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.4 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.38 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.36 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.36 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.33 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.33 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.29 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.26 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.24 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.23 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 97.23 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.22 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.17 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 97.15 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.12 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.1 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.09 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 97.09 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.09 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.08 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.98 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.86 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.85 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.85 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.85 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.8 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.8 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.78 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 96.78 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.76 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.76 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.75 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.72 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.71 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.71 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 96.7 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.64 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.63 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.61 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 96.6 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 96.6 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.58 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.51 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.51 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.5 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.49 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 96.46 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 96.44 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.39 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.35 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.3 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 96.28 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.2 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.17 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 96.16 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.15 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.09 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 96.08 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.05 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.04 | |
| 3t5o_A | 913 | Complement component C6; macpf, MAC, membrane atta | 96.0 | |
| 1nzi_A | 159 | Complement C1S component; calcium, innate immunity | 95.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 95.92 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.91 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 95.88 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 95.84 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.84 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 95.84 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.77 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 95.72 | |
| 1nzi_A | 159 | Complement C1S component; calcium, innate immunity | 95.69 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.62 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.6 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.53 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 95.49 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 95.46 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 95.43 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 95.41 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.29 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 95.22 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 95.15 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.12 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 95.09 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.03 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 94.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 94.76 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 94.74 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.71 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 94.7 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 94.68 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 94.66 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 94.63 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 94.44 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 94.32 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 94.18 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 94.16 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 93.78 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 93.65 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 93.64 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 93.49 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 93.46 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.44 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 93.43 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 93.35 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 93.2 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 93.13 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.91 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 92.91 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 92.9 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 92.25 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 92.11 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 92.08 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 91.86 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 91.81 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 91.71 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 91.4 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 91.21 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 91.18 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 91.16 | |
| 1a3p_A | 45 | Epidermal growth factor; disulfide connectivities, | 90.8 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.69 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 90.45 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 90.42 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 90.41 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 90.36 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 90.29 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 90.04 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 89.83 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 89.77 | |
| 1n1i_A | 105 | Merozoite surface protein-1; MSP1, malaria, surfac | 89.42 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 89.38 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 89.2 | |
| 1g1s_A | 162 | P-selectin; selectin, lectin, EGF, sulphated, SLEX | 89.15 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 89.13 | |
| 3t5o_A | 913 | Complement component C6; macpf, MAC, membrane atta | 89.08 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 88.54 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 88.41 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 88.1 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 87.85 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 87.42 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 86.94 | |
| 1ob1_C | 99 | Major merozoite surface protein; immune system, im | 86.9 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 86.77 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 86.6 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 86.58 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 86.36 | |
| 1k36_A | 46 | Epiregulin; EGF-like fold, hormone/growth factor c | 85.99 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 85.81 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 85.71 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 85.68 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 85.57 | |
| 3ca7_A | 52 | Protein spitz; argos, EGF, developmental protein, | 85.39 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 85.32 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 84.59 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 84.26 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 84.26 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 83.66 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 83.27 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 83.05 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 82.12 | |
| 1nt0_A | 286 | MAsp2, mannose-binding protein associated serine p | 82.01 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 81.91 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 81.82 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 81.62 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 81.54 | |
| 3dem_A | 278 | Complement factor MAsp-3; complement system, innat | 80.58 |
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-83 Score=767.17 Aligned_cols=505 Identities=36% Similarity=0.771 Sum_probs=375.4
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCC--------CCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc----
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQ--------DRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC---- 69 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~--------~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C---- 69 (841)
+|||..|+|||+.||.|||||.+++|. ...|...+|+|. +++||+..|+|||..||. |+|||.+|
T Consensus 156 ~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~dC~--dgsDE~~C~~~~ 232 (791)
T 3m0c_C 156 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL-SGECIHSSWRCDGGPDCK--DKSDEENCAVAT 232 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCCCCcCCCCCCcccccCCCccccCCCCCCCCCCccccc-CCceeccccccCCCCCCC--CCCCCCCccccc
Confidence 599999999999999999999877783 357999999998 889999999999999999 99999887
Q ss_pred ----------------------ccCCCCCCCCCCccCCCCCCCCCCCC-CCCCcccCCCCCeEecCCCCCCCCCCCCCCC
Q psy14257 70 ----------------------VNDCTDWSDETNCTHSGNRTISAPAC-EPHEFDCQDVLRTCIPKALVCDGEPACFNGE 126 (841)
Q Consensus 70 ----------------------~~dC~~~~de~~C~~c~~~~~c~~~C-~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~ 126 (841)
..||.|++||.+|.. ...| .+.+|+|.+ +.||+...+|++..+|.+|+
T Consensus 233 C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~-------~~~C~~~~~~~C~~--G~Ci~~~~~Cd~~~dC~dgs 303 (791)
T 3m0c_C 233 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN-------VTLCEGPNKFKCHS--GECITLDKVCNMARDCRDWS 303 (791)
T ss_dssp -----------------------------------------------CCSTTCCCCTT--SCCCCSSCCSCSSCCSSSSC
T ss_pred cCCCcceecCCceEecceecCChhccccccccCcccc-------cccccCCCccccCC--CcccccccccCCcccccccc
Confidence 347888888888764 2335 467899998 89999999999999999999
Q ss_pred CCcc--c--ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEeecCCe
Q psy14257 127 DEMF--C--DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGY 202 (841)
Q Consensus 127 de~~--C--~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~ 202 (841)
||.. | +||...++.|++.|.+++++|.|.|++||.+ .+++.|++++||..++.|++.|.|+ .|+|+|.|.+||
T Consensus 304 De~~~~C~~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l-~~g~~C~dideC~~~~~C~~~C~n~--~gsy~C~C~~Gy 380 (791)
T 3m0c_C 304 DEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLCVNL--EGGYKCQCEEGF 380 (791)
T ss_dssp SCCCTTBSCCSTTTGGGGCSSEEEECSBSEEEECCTTCEE-ETTTEEECCCCCSSSSSCTTTCCBC--SSCBCCCCCSSE
T ss_pred CccccccccccccccccCccccccCCCCCcccCCCCCCcc-CCCCccccCcccCCCCCCCCeeecC--CCCceeecCCCC
Confidence 9965 7 7898777899999999999999999999998 6899999999998778999999999 999999999999
Q ss_pred eecCCCCceEeCCCCCCCCeEEeccCccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecC
Q psy14257 203 ELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIG 282 (841)
Q Consensus 203 ~l~~d~~~C~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~ 282 (841)
.+..++++|+++ ...++|++++.++|++++++...+..++.+++.++||+|+...++ |||+|...++|+++++++
T Consensus 381 ~l~~~~~~C~~~---~~~p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~--lY~sD~~~~~I~~~~l~g 455 (791)
T 3m0c_C 381 QLDPHTKACKAV---GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDR 455 (791)
T ss_dssp ECCSSCCCCEET---TSCCEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTE--EEEEETTTTEEEEEEC--
T ss_pred EeCCCCceeeec---ccccccccccccceeEeeccCCcceeeecCCCceEEEeecccCCe--eEEeeccceeEEEEeccC
Confidence 999999999998 467899999999999999999888889999999999999997766 999999999999999876
Q ss_pred Ccc-cceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCC
Q psy14257 283 NSL-SNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQD 361 (841)
Q Consensus 283 ~~~-~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~ 361 (841)
... ....+++..++..|.||||||.+
T Consensus 456 ~~~~~~~~~vi~~~l~~P~GLAvD~~~----------------------------------------------------- 482 (791)
T 3m0c_C 456 AHGVSSYDTVISRDIQAPDGLAVDWIH----------------------------------------------------- 482 (791)
T ss_dssp ------CEEEECSSCSCCCEEEEETTT-----------------------------------------------------
T ss_pred CCCCcceeEEEecCCCCcceeeeeecC-----------------------------------------------------
Confidence 321 13445555567777777777654
Q ss_pred EEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecC
Q psy14257 362 ILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG 441 (841)
Q Consensus 362 ~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~ 441 (841)
++|||+|...++|++++++|+.+++++..
T Consensus 483 ---------------------------------------------------~~LY~tD~~~~~I~v~~ldG~~~~~l~~~ 511 (791)
T 3m0c_C 483 ---------------------------------------------------SNIYWTDSVLGTVSVADTKGVKRKTLFRE 511 (791)
T ss_dssp ---------------------------------------------------TEEEEEETTTTEEEEEETTSSSEEEEEEC
T ss_pred ---------------------------------------------------CcEEEEecCCCeEEEEeCCCCeEEEEEeC
Confidence 77888888888999999999999888888
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
.+..|+||||||.+|+||||||+. .++|+|++|||+.+++++. ..+.+|+|||||+.+++|||+|.+.++|+++
T Consensus 512 ~l~~P~gIaVDp~~g~LYwtD~g~-~~~I~~~~~dG~~~~~lv~-----~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~ 585 (791)
T 3m0c_C 512 NGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVT-----ENIQWPNGITLDLLSGRLYWVDSKLHSISSI 585 (791)
T ss_dssp TTCCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCCEEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCcceEEEecCCCCEEEecCCC-CCeEEEEecCCCceEEEEe-----CCCCCceEEEEecCCCeEEEEeCCCCcEEEE
Confidence 899999999999999999999983 4899999999999999987 6889999999999999999999999999999
Q ss_pred EcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcccCCCC
Q psy14257 522 TYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVKKSPCE 596 (841)
Q Consensus 522 ~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~~n~C~ 596 (841)
+++|..+++++.....+.+|+||++++++|||+||.+++|++++|.+|+.+.++...+..|++ +| +||.+.|||.
T Consensus 586 d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Qp~~~N~C~ 665 (791)
T 3m0c_C 586 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCE 665 (791)
T ss_dssp ETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCCTTT
T ss_pred ecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccCCCCCCccc
Confidence 999999999987766789999999999999999999999999999999999999888889988 66 8999999999
Q ss_pred C---CCCCCccccccCCC-----CceeeeCCCCceeecCCCcccccCc
Q psy14257 597 M---NNGNCSHLCLIGMN-----GTYKCQCPHVMKLMSDNKTCQVADS 636 (841)
Q Consensus 597 ~---~ng~Cs~lC~~~~~-----~~~~C~Cp~g~~l~~d~~tC~~~~~ 636 (841)
. +||+|+||||+.+. .+|+|+||+||.|.+|+++|...++
T Consensus 666 ~~~~~ng~CshlCl~~p~~~~~~~~~~C~Cp~g~~L~~d~~tC~~~~~ 713 (791)
T 3m0c_C 666 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAE 713 (791)
T ss_dssp SSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEEC---
T ss_pred ccCCCCcCcCeeecCCCCcCCCCCCceeECCCCCEECCCCCcCCCCCC
Confidence 7 79999999999874 2599999999999999999985443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-80 Score=740.33 Aligned_cols=508 Identities=35% Similarity=0.751 Sum_probs=422.7
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc------------
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC------------ 69 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C------------ 69 (841)
+|||..|+|||..||.|||||. +|....|.+++|+|. +++||+..|+|||..||. |||||.+|
T Consensus 60 ~Ci~~~~~Cdg~~dC~dgsDE~--~C~~~~C~~~~f~C~-~g~Ci~~~~~Cdg~~dC~--dgsDE~~C~~~~C~~~~f~C 134 (699)
T 1n7d_A 60 RCIPQFWRCDGQVDCDNGSDEQ--GCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCL--DGSDEASCPVLTCGPASFQC 134 (699)
T ss_dssp CCCCSSSTTSSSCCC-CCCTTT--SCSSCCCCSSCCCSS-CC----CCCTTCSSCCSS--SSCSSSSCCCCCCCSSCCCC
T ss_pred ceeCcceecCCcccCCCCcccC--cccccccccCcEEcC-CCCEecHHHcCCCcCcCC--CCCccCCcCccccCccccCC
Confidence 5899999999999999999998 888788988899997 788999999999999999 89999776
Q ss_pred --------------ccCCCCCCCC--CCcc----------CCCCCCC-CC----------------------------CC
Q psy14257 70 --------------VNDCTDWSDE--TNCT----------HSGNRTI-SA----------------------------PA 94 (841)
Q Consensus 70 --------------~~dC~~~~de--~~C~----------~c~~~~~-c~----------------------------~~ 94 (841)
..||.|++|| .+|. .|.+.+| |. ..
T Consensus 135 ~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~ 214 (699)
T 1n7d_A 135 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT 214 (699)
T ss_dssp SSSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCSCCCCC
T ss_pred CCCcccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCCceEechhccCCCCCCCCCcccccCCCcc
Confidence 4689999998 7774 2554444 31 24
Q ss_pred CCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc-------------------------------------------
Q psy14257 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC------------------------------------------- 131 (841)
Q Consensus 95 C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C------------------------------------------- 131 (841)
|.+.+|.|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 215 C~~~~f~C~~--g~Ci~~~~~Cdg~~dC~dgsde~~C~~~~~C~~~~~~~C~~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C 292 (699)
T 1n7d_A 215 CRPDEFQCSD--GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 292 (699)
T ss_dssp CCSSEEESSS--SCEEETTCCSSSCCCSSSSCSSSSTTCCCCCCSTTCCCCTTSCCCCSSCCSCSSCCSSSSCSCCCSSC
T ss_pred cCCCcEecCC--CceeeeecccCCCCCCCCCCccCCCCCCCcccCCCceecCCCcEeCCcccccccceecCccccccccc
Confidence 6667788886 7888888888888888888887544
Q ss_pred --ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEeecCCeeecCCCC
Q psy14257 132 --DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMF 209 (841)
Q Consensus 132 --~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~ 209 (841)
+||...++.|++.|.+++++|.|.|++||.+ .+++.|++++||...+.|++.|.|+ .++|+|.|++||.+..+++
T Consensus 293 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~-~~~~~C~dideC~~~~~C~~~C~n~--~g~y~C~C~~G~~~~~~~~ 369 (699)
T 1n7d_A 293 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLCVNL--EGGYKCQCEEGFQLDPHTK 369 (699)
T ss_dssp CCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCC-CSSSCCCCCCCCSSSSSCTTTCCBC--SSCBCCCCCSSCBCCSSCC
T ss_pred ccccccccccCcCCCcccCCCCcEEeCCCCeEc-CCCCcccCccccCCCCccccccccC--CCCeeeeeecccccCCCCC
Confidence 1233233457789999999999999999998 7899999999998778899999999 9999999999999999999
Q ss_pred ceEeCCCCCCCCeEEeccCccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcc-cce
Q psy14257 210 TCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSL-SNI 288 (841)
Q Consensus 210 ~C~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~-~~~ 288 (841)
+|+++ ...++|++++.+.|+++++++..+..++..++++++|+|+...+. |||+|...++|+++++++... ...
T Consensus 370 ~C~~~---~~~~~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~--Ly~sD~~~~~I~~~~~~g~~~~~~~ 444 (699)
T 1n7d_A 370 ACKAV---GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSY 444 (699)
T ss_dssp CCBCC---SSCCCBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTE--EEECCTTTTSBEEEESCCCCC-CCC
T ss_pred ccccc---ccceeEEecCccceEEEeCCCCcceeeeccCcceEEEccccccCe--EEEEecCCCeEEEEecCCCCCCcce
Confidence 99987 567899999999999999999888888888889999999987766 999999999999998875110 012
Q ss_pred EEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC
Q psy14257 289 DVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS 368 (841)
Q Consensus 289 ~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~ 368 (841)
..++..++..|.||||||.+
T Consensus 445 ~~~i~~~~~~P~glavD~~~------------------------------------------------------------ 464 (699)
T 1n7d_A 445 DTVISRDIQAPDGLAVDWIH------------------------------------------------------------ 464 (699)
T ss_dssp CCBCCSCC--CCCEECCCSS------------------------------------------------------------
T ss_pred EEEEeCCCCCcceEEEEeeC------------------------------------------------------------
Confidence 22233344445555554433
Q ss_pred CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCcee
Q psy14257 369 HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRA 448 (841)
Q Consensus 369 ~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~g 448 (841)
++|||+|...++|.+++++|..+++++...+..|++
T Consensus 465 --------------------------------------------g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~g 500 (699)
T 1n7d_A 465 --------------------------------------------SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRA 500 (699)
T ss_dssp --------------------------------------------SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCC
T ss_pred --------------------------------------------CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcce
Confidence 788888888889999999999888888878899999
Q ss_pred EEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee
Q psy14257 449 IALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH 528 (841)
Q Consensus 449 iavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~ 528 (841)
|||||..|+|||||++. .++|+|++++|+.+++++. ..+.+|+|||||+.+++|||+|...++|++++++|..+
T Consensus 501 iavDp~~g~ly~td~~~-~~~I~~~~~dG~~~~~l~~-----~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~ 574 (699)
T 1n7d_A 501 IVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVT-----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 574 (699)
T ss_dssp EECCSSSSCCEECCCSS-SCCEEBCCSSSCCCCEESC-----SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC
T ss_pred EEEccCCCcEEEcccCC-CCeEEEEeCCCCCeeEEEe-----CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce
Confidence 99999999999999872 4899999999999888876 57899999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcccCCCCCC---CC
Q psy14257 529 HVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVKKSPCEMN---NG 600 (841)
Q Consensus 529 ~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~~n~C~~~---ng 600 (841)
++++.....+.+|+||++++++|||+||.+++|.++++.+|+..++|...+..|++ +| +||.+.|||..+ ||
T Consensus 575 ~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~qp~~~n~C~~~~~~ng 654 (699)
T 1n7d_A 575 KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNG 654 (699)
T ss_dssp EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSSCCSCCSSCSSSCSSC
T ss_pred EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccCCCCCCCccccCCCCC
Confidence 98887555688999999999999999999999999999999988888777778888 55 889999999997 99
Q ss_pred CCccccccCCC-----CceeeeCCCCceeecCCCccccc
Q psy14257 601 NCSHLCLIGMN-----GTYKCQCPHVMKLMSDNKTCQVA 634 (841)
Q Consensus 601 ~Cs~lC~~~~~-----~~~~C~Cp~g~~l~~d~~tC~~~ 634 (841)
+|+||||+++. .+|+|+||+||.|.+|+++|+..
T Consensus 655 ~Cs~lCl~~p~~~~~~~~~~C~Cp~g~~l~~d~~~C~~~ 693 (699)
T 1n7d_A 655 GCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 693 (699)
T ss_dssp SCTTCCBCCCCCTTCSCSCBCCCCSSCEECSSTTCEECC
T ss_pred CCCcccCcCcccCCCCCCcEEECcCCCEECCCCCccCCC
Confidence 99999998752 35999999999999999999843
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-75 Score=683.50 Aligned_cols=463 Identities=33% Similarity=0.636 Sum_probs=407.2
Q ss_pred CCCCeEEeccCccccccccccccEEEE--eccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCC
Q psy14257 218 DSSPFVIFSNRHELRGVDLRTFNVIAL--ISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295 (841)
Q Consensus 218 ~~~p~ll~s~~~~I~~~~~~~~~~~~l--~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~ 295 (841)
.++++|+|+++++|+++++++.....+ +.++++++||||++.+++ |||+|...++|+|++++|+ ..++++..+
T Consensus 4 ~p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~--lywtD~~~~~I~r~~~~g~---~~~~v~~~g 78 (628)
T 4a0p_A 4 VPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNR--IYWTDISLKTISRAFMNGS---ALEHVVEFG 78 (628)
T ss_dssp -CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTE--EEEEETTTTEEEEEETTSC---SCEEEECSS
T ss_pred CCCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCE--EEEEECCCCeEEEEECCCC---CcEEEEeCC
Confidence 568999999999999999998655444 346789999999998777 9999999999999998764 456677777
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEE
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 375 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~ 375 (841)
+..|.||||||.+
T Consensus 79 ~~~P~GlAvD~~~------------------------------------------------------------------- 91 (628)
T 4a0p_A 79 LDYPEGMAVDWLG------------------------------------------------------------------- 91 (628)
T ss_dssp CSCCCEEEEETTT-------------------------------------------------------------------
T ss_pred CCCcceEEEEeCC-------------------------------------------------------------------
Confidence 7788888888765
Q ss_pred EEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCC
Q psy14257 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455 (841)
Q Consensus 376 ~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~ 455 (841)
++|||+|...++|++++++|+.+++++...+..|++|||||.+
T Consensus 92 -------------------------------------~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~ 134 (628)
T 4a0p_A 92 -------------------------------------KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE 134 (628)
T ss_dssp -------------------------------------TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT
T ss_pred -------------------------------------CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC
Confidence 7888888888899999999988888887889999999999999
Q ss_pred CeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC
Q psy14257 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH 535 (841)
Q Consensus 456 g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~ 535 (841)
|+||||||+. .++|+|++|||+.+++++. .+.+|+||+||+.+++|||+|...++|++++++|+.++++..
T Consensus 135 G~lY~tD~g~-~~~I~r~~~dG~~~~~l~~------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~-- 205 (628)
T 4a0p_A 135 GFMYWTEWGG-KPKIDRAAMDGSERTTLVP------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD-- 205 (628)
T ss_dssp TEEEEEECSS-SCEEEEEETTSCSCEEEEC------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE--
T ss_pred CeEEEeCCCC-CCEEEEEeCCCCceEEEEC------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec--
Confidence 9999999973 6899999999999998874 689999999999999999999999999999999999876654
Q ss_pred CCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcccCCCCCCCCCCccccccCC
Q psy14257 536 DSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVKKSPCEMNNGNCSHLCLIGM 610 (841)
Q Consensus 536 ~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~~n~C~~~ng~Cs~lC~~~~ 610 (841)
.+.+|+||++++++||||||.+++|.+++|.+|+..+++...+..|++ +| +|| +.|+|..+||+|+|+|++.+
T Consensus 206 -~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~-~~n~C~~~ng~C~~~C~~~~ 283 (628)
T 4a0p_A 206 -DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVP 283 (628)
T ss_dssp -CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSC-CCCTTTTTGGGCSSEEEEET
T ss_pred -cCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccc-cceEeccCCCCcchhhhcCC
Confidence 378999999999999999999999999999999999999888888988 66 565 68999999999999999998
Q ss_pred CCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCC
Q psy14257 611 NGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEY 690 (841)
Q Consensus 611 ~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~ 690 (841)
.++|+|.||.||.|.+|+++|. ++.+||+++....|+++.++.... ....+++.++.++.+|+||+.+++|||+|...
T Consensus 284 ~~~~~C~C~~g~~l~~d~~~C~-~~~~~Ll~s~~~~i~~i~l~~~~~-~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~ 361 (628)
T 4a0p_A 284 VGGFVCGCPAHYSLNADNRTCS-APTTFLLFSQKSAINRMVIDEQQS-PDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ 361 (628)
T ss_dssp TTEEEEECSTTCEECTTSSCEE-CCSSEEEEEETTEEEEECCCTTCC-CCEECCCTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCeeEEcCCCcEecccCCcCc-cccceeeeeccceEEEEecccccC-ceEEEEehhcCCceEEEEecCCCeEEEEecCc
Confidence 7789999999999999999999 778999999999999999975432 23456788899999999999999999999999
Q ss_pred CeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeC------CCCCcceeEEeecCCcEEEEecCCCCCeE
Q psy14257 691 NEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDA------GISHPSGLAIDWIAQNMFIAVSSPTQSKI 764 (841)
Q Consensus 691 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~p~glAvD~~~~~LYw~~~~~~~~~I 764 (841)
++|+|++++|+. .++++.. .+..|.||||||++++|||| |..+++|
T Consensus 362 ~~I~r~~~~g~~--------------------------~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~t--d~~~~~I 413 (628)
T 4a0p_A 362 NMIRKAQEDGSQ--------------------------GFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT--CEATNVI 413 (628)
T ss_dssp TEEEEEETTSCS--------------------------CEEEEC--------CCCEEEEEEETTTTEEEEE--ETTTTEE
T ss_pred ceEEEEEcCCCC--------------------------ceEEEEcccccccccCCcceEEeeccCCeEEEE--cCCCCEE
Confidence 999999999987 3344433 57789999999999999999 5688999
Q ss_pred EEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCceEEEecCC-CCce
Q psy14257 765 VVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK-KYPA 836 (841)
Q Consensus 765 ~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~~~l~~~~-~~~~ 836 (841)
++++++|+.+++++.. .+.+|++|||||.+|+|||+||+.+.++|+|++|||+++++|+++. ..|.
T Consensus 414 ~v~~~~G~~~~~l~~~------~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~ 480 (628)
T 4a0p_A 414 NVTRLDGRSVGVVLKG------EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPI 480 (628)
T ss_dssp EEEETTSCEEEEEEEC------TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEE
T ss_pred EEEECCCCeEEEEEeC------CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCcc
Confidence 9999999999888863 1899999999999999999999986458999999999999999865 4554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-75 Score=685.62 Aligned_cols=467 Identities=35% Similarity=0.762 Sum_probs=403.9
Q ss_pred CCCeEEeccCccccccccccc--cEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCC
Q psy14257 219 SSPFVIFSNRHELRGVDLRTF--NVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGL 296 (841)
Q Consensus 219 ~~p~ll~s~~~~I~~~~~~~~--~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l 296 (841)
..|+|+++++++|+++++++. ++..+++++++++||||++.++. |||+|...++|+|++++|.. ..++++..++
T Consensus 8 ~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~--ly~sD~~~~~I~r~~~~g~~--~~~~v~~~~~ 83 (619)
T 3s94_A 8 HAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGL--IYWSDVSEEAIKRTEFNKTE--SVQNVVVSGL 83 (619)
T ss_dssp --CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTE--EEEEETTTTEEEEEEC-------CEEEECSSC
T ss_pred cCceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCE--EEEEECCCCeEEEEEccCCC--ceEEEEeCCC
Confidence 478999999999999999875 46667788999999999998777 99999999999999988653 3456777788
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEE
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESV 376 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~ 376 (841)
..|+|||+||.+
T Consensus 84 ~~P~GlAvD~~~-------------------------------------------------------------------- 95 (619)
T 3s94_A 84 LSPDGLACDWLG-------------------------------------------------------------------- 95 (619)
T ss_dssp SCEEEEEEETTT--------------------------------------------------------------------
T ss_pred CCcCeEEEEecC--------------------------------------------------------------------
Confidence 888888888765
Q ss_pred EecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCC
Q psy14257 377 RVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG 456 (841)
Q Consensus 377 ~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g 456 (841)
++|||+|...++|.+++++|+.+++++...+..|++|||||.+|
T Consensus 96 ------------------------------------~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g 139 (619)
T 3s94_A 96 ------------------------------------EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG 139 (619)
T ss_dssp ------------------------------------TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTT
T ss_pred ------------------------------------CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCC
Confidence 78888888888999999999988888878899999999999999
Q ss_pred eEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC
Q psy14257 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD 536 (841)
Q Consensus 457 ~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~ 536 (841)
+||||||+. .++|+|++|||+.+++++. ..+.+|+|||+|+.+++|||+|.+.++|++++++|..++++...
T Consensus 140 ~ly~tD~g~-~~~I~r~~~dG~~~~~l~~-----~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~-- 211 (619)
T 3s94_A 140 FMYWTDWGE-VPKIERAGMDGSSRFIIIN-----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-- 211 (619)
T ss_dssp EEEEEECSS-SCEEEEEETTSCSCEEEEC-----SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------
T ss_pred eEEEeccCC-CCEEEEEECCCCceEEEEe-----CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC--
Confidence 999999983 6899999999999999987 67899999999999999999999999999999999999888764
Q ss_pred CCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcccCCCCCCCCCCccccccCCC
Q psy14257 537 SLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVKKSPCEMNNGNCSHLCLIGMN 611 (841)
Q Consensus 537 ~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~~n~C~~~ng~Cs~lC~~~~~ 611 (841)
.+.+|+||++++++||||||.+++|.+++|.+|+..+++...+..|++ +| +||.+.|||..+||+|||+|++++.
T Consensus 212 ~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~ 291 (619)
T 3s94_A 212 SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPV 291 (619)
T ss_dssp ----CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSS
T ss_pred CCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCC
Confidence 378999999999999999999999999999999998888887888998 56 7999999999999999999999886
Q ss_pred C-ceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCC
Q psy14257 612 G-TYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEY 690 (841)
Q Consensus 612 ~-~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~ 690 (841)
. +|+|+||.||.|.+|+++|...+++||+++....|+++.|+.+.... ..+++.++.++.+|+||+.+++|||+|...
T Consensus 292 ~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~-~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~ 370 (619)
T 3s94_A 292 KPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTD-IVLQLEDIRHAIAIDYDPVEGYIYWTDDEV 370 (619)
T ss_dssp TTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCC-EECCCSCCSSEEEEEEETTTTEEEEEETTT
T ss_pred CCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccce-eEEeccccCccEEEEEEcCCCeEEEEeCCC
Confidence 3 69999999999999999999667999999999999999998765543 356788899999999999999999999999
Q ss_pred CeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecC
Q psy14257 691 NEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLE 770 (841)
Q Consensus 691 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~ 770 (841)
++|+|++++|+. .++++..++..|.||||||.+++|||| |..+++|++++++
T Consensus 371 ~~I~r~~~~g~~--------------------------~~~v~~~~~~~p~GlAvD~~~~~lY~t--D~~~~~I~v~~~~ 422 (619)
T 3s94_A 371 RAIRRSFIDGSG--------------------------SQFVVTAQIAHPDGIAVDWVARNLYWT--DTGTDRIEVTRLN 422 (619)
T ss_dssp TEEEEEETTSCS--------------------------CEEEECSSCSCCCEEEEETTTTEEEEE--ETTTTEEEEEETT
T ss_pred CeEEEEEcCCCc--------------------------cEEEEECCCCCcCceEEecccCcEEEE--eCCCCcEEEEeCC
Confidence 999999999987 667777889999999999999999999 5688999999999
Q ss_pred CcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCceEEEecCC-CCcee
Q psy14257 771 GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK-KYPAV 837 (841)
Q Consensus 771 g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~~~l~~~~-~~~~~ 837 (841)
|+.+++++.. .+.+|++|||||.+|+|||+||+.. ++|+|++|||+++++|+... ..|.-
T Consensus 423 G~~~~~l~~~------~l~~P~~iavdp~~G~ly~tD~g~~-~~I~r~~~dG~~~~~l~~~~l~~P~G 483 (619)
T 3s94_A 423 GTMRKILISE------DLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGWPNG 483 (619)
T ss_dssp SCSCEEEECT------TCCSEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CCeEEEEEEC------CCCCeeeEEEEcCCCcEEEecCCCC-CEEEEEccCCCccEEEEeCCCCCCee
Confidence 9999998863 1899999999999999999999874 79999999999999999764 55543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-64 Score=563.83 Aligned_cols=383 Identities=34% Similarity=0.713 Sum_probs=342.5
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
+||...+..|++.|.|++++|.|.|++||.+ .+++.|++++||..++.|++.|.|+ .|+|.|.|.+||.+..++++|
T Consensus 1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~-~~~~~C~dideC~~~~~C~~~C~n~--~g~~~C~C~~g~~~~~~~~~C 77 (400)
T 3p5b_L 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLCVNL--EGGYKCQCEEGFQLDPHTKAC 77 (400)
T ss_dssp CCTTTTGGGCSSEEEECSSSEEEECCTTEEE-CSSSCEEECCCCSTTSSCSSCCBCC--SSSCBCCCCTTCCCCTTTSSC
T ss_pred CcccCCCCCCCCEeECCCCCeEEECCCCCCc-CCCCcccCchhhhccCCCCCccCCC--ccceeeeccccccccccccce
Confidence 5787667789999999999999999999998 6899999999998778999999999 999999999999999999999
Q ss_pred EeCCCCCCCCeEEeccCccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCc-ccceEE
Q psy14257 212 KSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNS-LSNIDV 290 (841)
Q Consensus 212 ~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~-~~~~~~ 290 (841)
++. ...|+|++++.++|+++++++..+..+++.+.+++||+|+..++. |||+|...++|+++++++.. .....+
T Consensus 78 ~~~---~~~~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~--lywsD~~~~~I~~~~~~g~~~~~~~~~ 152 (400)
T 3p5b_L 78 KAV---GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSYDT 152 (400)
T ss_dssp CCS---TTSCEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTE--EEEEETTTTEEEEEEC------CCCEE
T ss_pred eec---cccceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCc--eEEEecCCCeEEEEEcccCCCCCcceE
Confidence 987 568999999999999999999888888999999999999998776 99999999999999887531 013455
Q ss_pred EEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCC
Q psy14257 291 VVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL 370 (841)
Q Consensus 291 ~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~ 370 (841)
++..++..|.||||||.+
T Consensus 153 ~~~~~~~~p~glavD~~~-------------------------------------------------------------- 170 (400)
T 3p5b_L 153 VISRDIQAPDGLAVDWIH-------------------------------------------------------------- 170 (400)
T ss_dssp EECSSCSCEEEEEEETTT--------------------------------------------------------------
T ss_pred EEeCCCCCcccEEEEecC--------------------------------------------------------------
Confidence 666677777777777654
Q ss_pred CeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEE
Q psy14257 371 NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIA 450 (841)
Q Consensus 371 ~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~gia 450 (841)
++|||+|...++|++++++|+.+++++...+..|++||
T Consensus 171 ------------------------------------------~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~ia 208 (400)
T 3p5b_L 171 ------------------------------------------SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 208 (400)
T ss_dssp ------------------------------------------TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEE
T ss_pred ------------------------------------------CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEE
Confidence 78888888888999999999998888888899999999
Q ss_pred EcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEE
Q psy14257 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530 (841)
Q Consensus 451 vd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~ 530 (841)
|||..|+||||||+. .++|+|+++||+.+++++. ..+.+|+|||||+.+++|||+|...++|++++++|..+++
T Consensus 209 vdp~~g~ly~td~~~-~~~I~~~~~dG~~~~~~~~-----~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~ 282 (400)
T 3p5b_L 209 VDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVT-----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 282 (400)
T ss_dssp EETTTTEEEEEECSS-SCCEEEEETTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEE
T ss_pred EecccCeEEEEeCCC-CCEEEEEeCCCCccEEEEE-----CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEE
Confidence 999999999999983 5899999999999999887 6889999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcccCCCC---CCCCCC
Q psy14257 531 VLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVKKSPCE---MNNGNC 602 (841)
Q Consensus 531 i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~~n~C~---~~ng~C 602 (841)
++.....+.+|+||++++++|||+||.+++|.+++|.+|+...++...+..|++ +| +||.+.|||. .+||+|
T Consensus 283 ~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~c~~~~~~ng~C 362 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGC 362 (400)
T ss_dssp EEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGGSCCCCCSSSSSSSGGGGC
T ss_pred EEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeeccCCCCCCccccccCCCcCc
Confidence 987656689999999999999999999999999999999999988888888988 66 8999999996 468999
Q ss_pred ccccccCCCC-----ceeeeCCCCceeecCCCccc
Q psy14257 603 SHLCLIGMNG-----TYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 603 s~lC~~~~~~-----~~~C~Cp~g~~l~~d~~tC~ 632 (841)
+|||++.+.. +|+|+||+||.|.+|+++|.
T Consensus 363 ~~lC~~~~~~~~~~~~~~C~C~~g~~l~~d~~~C~ 397 (400)
T 3p5b_L 363 QYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397 (400)
T ss_dssp SSEEEECCCSSTTCCSEEEECCTTCEECTTSSSEE
T ss_pred CCeecCCCcccCCCCCeeEECCCCCEECCCCCccC
Confidence 9999998752 69999999999999999998
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-63 Score=553.79 Aligned_cols=377 Identities=40% Similarity=0.794 Sum_probs=293.2
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
+||...++.|++.|.++.|+|.|.|++||.|.++++.|++++||...+.|++.|.++ .++|+|.|.+||.+..++++|
T Consensus 4 ~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~--~g~~~C~C~~g~~l~~d~~~C 81 (386)
T 3v65_B 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS--EGAFQCWCEAGYELRPDRRSC 81 (386)
T ss_dssp ------------------------------------------------CCTTEEC-------CCEECCTTEEECTTSSCE
T ss_pred CcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeCCcCcccCcCCCC--CCCCeEEECCCceEcCCCCeE
Confidence 578777788999999999999999999999999999999999997668999999999 999999999999999999999
Q ss_pred EeCCCCCCCCeEEeccCccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEE
Q psy14257 212 KSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVV 291 (841)
Q Consensus 212 ~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~ 291 (841)
++. ..+++|++++.++|+++++++..+..++.++..+.+++|+...+. |||+|...++|+|++++++ ..+++
T Consensus 82 ~~~---~~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~--ly~~D~~~~~I~r~~~~g~---~~~~~ 153 (386)
T 3v65_B 82 KAL---GPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRREL--VFWSDVTLDRILRANLNGS---NVEEV 153 (386)
T ss_dssp EEC---SSCCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTE--EEEEETTTTEEEEEETTSC---CEEEE
T ss_pred CCc---cccceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCe--EEEEeCCCCcEEEEecCCC---CcEEE
Confidence 998 448999999999999999999888888999999999999987776 9999999999999998765 34556
Q ss_pred EeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCC
Q psy14257 292 VQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN 371 (841)
Q Consensus 292 ~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~ 371 (841)
+..++..|.|||+||.+
T Consensus 154 ~~~~~~~p~glavd~~~--------------------------------------------------------------- 170 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVH--------------------------------------------------------------- 170 (386)
T ss_dssp ECSSCSCCCCEEEETTT---------------------------------------------------------------
T ss_pred EeCCCCCccEEEEEeCC---------------------------------------------------------------
Confidence 66677778888887654
Q ss_pred eEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEE
Q psy14257 372 TVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIAL 451 (841)
Q Consensus 372 ~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giav 451 (841)
++|||+|...++|.+++++|+.+++++..++..|++|||
T Consensus 171 -----------------------------------------g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giav 209 (386)
T 3v65_B 171 -----------------------------------------DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 209 (386)
T ss_dssp -----------------------------------------TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEE
T ss_pred -----------------------------------------CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEE
Confidence 777888888888999999998888888888999999999
Q ss_pred cCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEE
Q psy14257 452 DPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVV 531 (841)
Q Consensus 452 d~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i 531 (841)
||.+|+|||+|++. .++|+|+++||+.+++++. ..+.+|+|||||+.+++|||+|...++|++++++|+.++++
T Consensus 210 dp~~g~ly~td~~~-~~~I~r~~~dG~~~~~~~~-----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 210 HPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIAD-----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp ETTTTEEEEEECSS-SCEEEEEETTSCSCEEEEC-----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred EcCCCeEEEeccCC-CCEEEEEeCCCCCcEEEEE-----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 99999999999982 3899999999999999887 67899999999999999999999999999999999999888
Q ss_pred EcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcccCCCCCCCCCCcccc
Q psy14257 532 LSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVKKSPCEMNNGNCSHLC 606 (841)
Q Consensus 532 ~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~~n~C~~~ng~Cs~lC 606 (841)
+... +.+|+||++++++|||+||.+++|.+++|.+|+..+++...+..|++ +| +||.+.|||..+||+|+|||
T Consensus 284 ~~~~--~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q~~~~n~C~~~ng~C~~lC 361 (386)
T 3v65_B 284 ISQG--LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLC 361 (386)
T ss_dssp ECSS--CSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGSCCCCCTTTTSCTTSSSEE
T ss_pred EECC--CCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcCcCCcCccccCCCCCCcee
Confidence 7654 78999999999999999999999999999999999988888889988 55 88999999999999999999
Q ss_pred ccCCCCceeeeCCCCceeecCCCccc
Q psy14257 607 LIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 607 ~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
++.+. +++|+||+||. ..|+++|.
T Consensus 362 l~~~~-~~~C~C~~g~~-~~d~~~C~ 385 (386)
T 3v65_B 362 LPSGQ-NYTCACPTGFR-KINSHACA 385 (386)
T ss_dssp ECCSS-SCEEECCTTCB-CSSSSCCB
T ss_pred eeCCC-CCeeECCCCCc-CCCCCccC
Confidence 99986 69999999999 99999997
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=492.34 Aligned_cols=337 Identities=42% Similarity=0.836 Sum_probs=294.3
Q ss_pred ccccCCCCCccCceeecCCCCceEEeecCCeeecCCCCceEeCCCCCCCCeEEeccCccccccccccccEEEEeccccce
Q psy14257 172 LHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNT 251 (841)
Q Consensus 172 ~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~ 251 (841)
++||..++.|+|.|.|+ .|+|+|.|++||.|..++++|++. ..+++|++++.+.|+++++++..+..+++++.++
T Consensus 1 i~ec~~~~~C~~~C~n~--~g~~~C~C~~g~~l~~d~~~C~~~---~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~ 75 (349)
T 3v64_C 1 VNECAEEGYCSQGCTNS--EGAFQCWCEAGYELRPDRRSCKAL---GPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 75 (349)
T ss_dssp --------CCSSEECCC-----CCEECCTTEEECTTSSCEEES---SSCCEEEEECBSCEEEECTTSCCEEEEECSCSCE
T ss_pred CcccCCCCCCcCeeecC--CCCeEEECCCCccCCCCCCccccc---ccCceeEeecccceEEEeCCCCeeEEeecCCCce
Confidence 46887668999999999 999999999999999999999998 3489999999999999999998888888999999
Q ss_pred eeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEE
Q psy14257 252 IALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIE 331 (841)
Q Consensus 252 ~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~ 331 (841)
.+++|+..++. |||+|...++|+|++++++. .+.++..++..|.|||+||.+
T Consensus 76 ~~l~~d~~~~~--ly~~D~~~~~I~r~~~~g~~---~~~~~~~~~~~p~glavd~~~----------------------- 127 (349)
T 3v64_C 76 IALDFHHRREL--VFWSDVTLDRILRANLNGSN---VEEVVSTGLESPGGLAVDWVH----------------------- 127 (349)
T ss_dssp EEEEEETTTTE--EEEEETTTTEEEEEETTSCS---CEEEECSSCSCCCEEEEETTT-----------------------
T ss_pred EEEEEeccccE--EEEEeccCCceEEEecCCCC---ceEEEeCCCCCccEEEEecCC-----------------------
Confidence 99999987777 99999999999999987653 455666677778888777654
Q ss_pred EEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccc
Q psy14257 332 KAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI 411 (841)
Q Consensus 332 ~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~ 411 (841)
T Consensus 128 -------------------------------------------------------------------------------- 127 (349)
T 3v64_C 128 -------------------------------------------------------------------------------- 127 (349)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 412 GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
++|||+|...++|.+++++|+.+++++...+..|++|||||.+|+|||+|++. .++|+|+++||+.+++++. .
T Consensus 128 -g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~dG~~~~~~~~-----~ 200 (349)
T 3v64_C 128 -DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIAD-----T 200 (349)
T ss_dssp -TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEESCC-----S
T ss_pred -CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC-CCEEEEEeCCCCCcEEEEE-----C
Confidence 77778887778888888888888888877889999999999999999999982 3899999999999988876 6
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
.+.+|+|||+|+.+++|||+|...++|++++++|+.+++++... +.+|+||++++++|||+||.+++|.+++|.+|+.
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEEECCEEEEecCCCCeEEEEEccCCCc
Confidence 78999999999999999999999999999999999998887654 7899999999999999999999999999999999
Q ss_pred eEEEecccCCCce---ec--cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 572 VTLIQRTLTQPFI---YV--NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 572 ~~~i~~~~~~p~~---~h--~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
.+++...+..|++ +| +||.+.|||..+||+|+|||++.+. +++|+||+||. ..|+++|.
T Consensus 279 ~~~i~~~~~~p~gi~v~~~~~qp~~~n~C~~~~g~C~~lCl~~~~-~~~C~C~~g~~-~~d~~~C~ 342 (349)
T 3v64_C 279 QEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ-NYTCACPTGFR-KINSHACA 342 (349)
T ss_dssp CEEEECSCSCCCCEEEECGGGSCCCCCTTTTGGGGCSSEEECCTT-SCEEECCTTEE-EETTTEEE
T ss_pred cEEeccCCCCCceEEEEccccCccccCcccCCCCCcccEeecCCC-CCeeECCCCCc-CCCCCccc
Confidence 9988888889998 56 8899999999999999999999986 69999999999 99999998
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=502.87 Aligned_cols=392 Identities=34% Similarity=0.689 Sum_probs=323.6
Q ss_pred CCCCeEEecc--Ccccccccccccc-EEEE-eccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEe
Q psy14257 218 DSSPFVIFSN--RHELRGVDLRTFN-VIAL-ISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQ 293 (841)
Q Consensus 218 ~~~p~ll~s~--~~~I~~~~~~~~~-~~~l-~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~ 293 (841)
.....++|++ .+.|+++++++.. ...+ ..++..+.++++|...++ |||+|...++|.+++++|. ..++++.
T Consensus 49 ~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~--ly~~d~~~~~I~v~~~dG~---~~~~l~~ 123 (619)
T 3s94_A 49 FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK--LYWTDSETNRIEVSNLDGS---LRKVLFW 123 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTE--EEEEETTTTEEEEEETTSC---SCEEEEC
T ss_pred eCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCE--EEEEeCCCCEEEEEECCCC---CEEEEEe
Confidence 3455677776 4678888888753 2333 445566655555554456 9999999999999999864 4566777
Q ss_pred CCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeE
Q psy14257 294 TGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTV 373 (841)
Q Consensus 294 ~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I 373 (841)
..+..|.+||||+. +++||||||+.. ++|+|++|||+.+++++...+.+|+||++|+.+++|||+|...++|
T Consensus 124 ~~l~~P~~Iavdp~--~g~ly~tD~g~~------~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I 195 (619)
T 3s94_A 124 QELDQPRAIALDPS--SGFMYWTDWGEV------PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195 (619)
T ss_dssp SSCSCCCCEEEETT--TTEEEEEECSSS------CEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred CCCCCCceEEEecC--CCeEEEeccCCC------CEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence 88999999999974 579999999854 4999999999999999988999999999999999999999999999
Q ss_pred EEEEecCCccEEEEee--------e-----------------------------------------eecC----------
Q psy14257 374 ESVRVDGSERTVSFNL--------E-----------------------------------------VLGS---------- 394 (841)
Q Consensus 374 ~~~~ldG~~~~~~~~~--------~-----------------------------------------~~~~---------- 394 (841)
++++++|+.++++... . ++..
T Consensus 196 ~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C 275 (619)
T 3s94_A 196 HKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPC 275 (619)
T ss_dssp EEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTT
T ss_pred EEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccc
Confidence 9999999877643210 0 0000
Q ss_pred --------------CC-c-------cc----------------------------------------cCC----------
Q psy14257 395 --------------DS-R-------VG----------------------------------------IPN---------- 402 (841)
Q Consensus 395 --------------~~-~-------~~----------------------------------------i~~---------- 402 (841)
+. . .| ++.
T Consensus 276 ~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld 355 (619)
T 3s94_A 276 GIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAID 355 (619)
T ss_dssp TTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEE
T ss_pred cCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEE
Confidence 00 0 00 000
Q ss_pred --------------------------------------CCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCC
Q psy14257 403 --------------------------------------CRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDME 444 (841)
Q Consensus 403 --------------------------------------~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~ 444 (841)
...+|+||++++|||+|...++|++++++|+.+++++..++.
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~ 435 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLE 435 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCC
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCC
Confidence 001368999999999999999999999999999999988899
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d 524 (841)
+|++|||||.+|+||||||+. .++|+|+.|||+.+++++. ..+.+|+|||||+.+++|||+|..+++|++++++
T Consensus 436 ~P~~iavdp~~G~ly~tD~g~-~~~I~r~~~dG~~~~~l~~-----~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 436 EPRAIVLDPMVGYMYWTDWGE-IPKIERAALDGSDRVVLVN-----TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp SEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred CeeeEEEEcCCCcEEEecCCC-CCEEEEEccCCCccEEEEe-----CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 999999999999999999983 5899999999999998886 6799999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec-cCCcccCCCCCCCC
Q psy14257 525 GKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV-NGVVKKSPCEMNNG 600 (841)
Q Consensus 525 G~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h-~qp~~~n~C~~~ng 600 (841)
|+.+++++.. .+.+|+||++++++||||||.+++|.+++|.+| ..+++...+..|++ +| .++.+.|+|..+||
T Consensus 510 G~~~~~~~~~--~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~~~~~~~i~~~~~~~~~~~~~C~~~ng 586 (619)
T 3s94_A 510 GTGRRVLVED--KIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQLPDLMGLKATNVHRVIGSNPCAEENG 586 (619)
T ss_dssp SCCCEEEEEC--CCCSSCCEEEETTEEEEECTTSSCEEEEESSSC-CEEEEECSCCCEEEEEEEESSCCCCCCGGGSGGG
T ss_pred CCceEEEecc--CCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC-ceEEEecCCCCCceeeecccccccccccCCCCCC
Confidence 9999988764 388999999999999999999999999999999 55667777788888 55 44558999999999
Q ss_pred CCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 601 NCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 601 ~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
+|+|+|++.+.+ ++|+||.||.|.+|+++|.
T Consensus 587 ~C~~~C~~~~~~-~~C~C~~g~~l~~d~~~C~ 617 (619)
T 3s94_A 587 GCSHLCLYRPQG-LRCACPIGFELISDMKTCI 617 (619)
T ss_dssp GCSSEEEEETTE-EEEECCTTCEECSSTTCEE
T ss_pred ChhHhhccCCCC-eEEECCCCCEECCCCCcCC
Confidence 999999998865 9999999999999999998
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-54 Score=513.15 Aligned_cols=425 Identities=26% Similarity=0.525 Sum_probs=186.2
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc------------
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC------------ 69 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C------------ 69 (841)
+|||..|+|||..||.|||||. +|....|..++|+|. +++||+..|+|||..||. |+|||.+|
T Consensus 78 ~Ci~~~~~CDg~~dC~dgsDE~--~C~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~dC~--dgsDE~~C~~~~C~~~~f~C 152 (791)
T 3m0c_C 78 RCIPQFWRCDGQVDCDNGSDEQ--GCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCL--DGSDEASCPVLTCGPASFQC 152 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEeeccccCCCCcCcCCCcccC--CccCccccCCeEECC-CCCEECHHHcCCCcccCC--CCcccccccccccccceecc
Confidence 6999999999999999999998 998889999999998 899999999999999999 99999877
Q ss_pred --------------ccCCCCCCCCC--CccCCCCCCCCCCCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc--
Q psy14257 70 --------------VNDCTDWSDET--NCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC-- 131 (841)
Q Consensus 70 --------------~~dC~~~~de~--~C~~c~~~~~c~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C-- 131 (841)
..||.|++||. +|..-.....-...|.+.+|.|.+ +.||+.+++|||..+|.+++||..|
T Consensus 153 ~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~--g~Ci~~~~~CDg~~dC~dgsDE~~C~~ 230 (791)
T 3m0c_C 153 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENCAV 230 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccccccccCCCCCcCCCCCCcccccCCCccccCCCCCCCCCCcccccC--CceeccccccCCCCCCCCCCCCCCccc
Confidence 47899999996 553200000012346666777765 6777777777777777777777655
Q ss_pred cccccc-----CCCCC---------CCcccCCCCcEE------------------------------ecCCCceecCCCC
Q psy14257 132 DEKQCL-----RSDCH---------HDCYNTPEGFMC------------------------------VCPRDMYLQPDLI 167 (841)
Q Consensus 132 ~eC~~~-----~~~C~---------~~C~~~~g~~~C------------------------------~C~~Gy~l~~d~~ 167 (841)
..|... ++.|. ..|.+...++.| .|+.|+- .+..
T Consensus 231 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~C~~G~Ci~~~~~Cd~~~dC~dgsD--e~~~ 308 (791)
T 3m0c_C 231 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSD--EPIK 308 (791)
T ss_dssp ------------------------------------------CCSTTCCCCTTSCCCCSSCCSCSSCCSSSSCS--CCCT
T ss_pred cccCCCcceecCCceEecceecCChhccccccccCcccccccccCCCccccCCCcccccccccCCccccccccC--cccc
Confidence 222211 11221 023333222222 3333321 1122
Q ss_pred ccccccccCC-CCCccCceeecCCCCceEEeecCCeeecCCCCceEeCCCCCCCCeEEeccCccccccccccccEE----
Q psy14257 168 TCSYLHPCEA-WGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVI---- 242 (841)
Q Consensus 168 ~C~~~~eC~~-~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~---- 242 (841)
.| +.+||.. .+.|++.|.++ .++|.|.|++||.+ .+++.|.++++.. .+... .+ + =++.. +.+.
T Consensus 309 ~C-~~~~C~~~~~~C~~~C~~~--~~~y~C~C~~Gy~l-~~g~~C~dideC~-~~~~C-~~---~-C~n~~-gsy~C~C~ 377 (791)
T 3m0c_C 309 EC-GTNECLDNNGGCSHVCNDL--KIGYECLCPDGFQL-VAQRRCEDIDECQ-DPDTC-SQ---L-CVNLE-GGYKCQCE 377 (791)
T ss_dssp TB-SCCSTTTGGGGCSSEEEEC--SBSEEEECCTTCEE-ETTTEEECCCCCS-SSSSC-TT---T-CCBCS-SCBCCCCC
T ss_pred cc-ccccccccccCccccccCC--CCCcccCCCCCCcc-CCCCccccCcccC-CCCCC-CC---e-eecCC-CCceeecC
Confidence 34 3567763 46789999999 99999999999998 6789999885432 11100 00 0 00000 0000
Q ss_pred ---EEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeec
Q psy14257 243 ---ALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWS 319 (841)
Q Consensus 243 ---~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~ 319 (841)
.+....+.-.+++. .. .||+++
T Consensus 378 ~Gy~l~~~~~~C~~~~~---~p--~Ll~an-------------------------------------------------- 402 (791)
T 3m0c_C 378 EGFQLDPHTKACKAVGS---IA--YLFFTN-------------------------------------------------- 402 (791)
T ss_dssp SSEECCSSCCCCEETTS---CC--EEEEEC--------------------------------------------------
T ss_pred CCCEeCCCCceeeeccc---cc--cccccc--------------------------------------------------
Confidence 00000011111110 00 122221
Q ss_pred CCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccc
Q psy14257 320 LSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVG 399 (841)
Q Consensus 320 ~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~ 399 (841)
...|.++.+++.....++ ..+..|.||++|+.+++|||+|...++|++++++|....
T Consensus 403 -------~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~--------------- 459 (791)
T 3m0c_C 403 -------RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------------- 459 (791)
T ss_dssp -------BSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------
T ss_pred -------ccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---------------
Confidence 124555555554433332 346677788888777788888877777777766653100
Q ss_pred cCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC
Q psy14257 400 IPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH 479 (841)
Q Consensus 400 i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~ 479 (841)
....+++...+..|.|||||+..+.|||+|+. ..+|++++++|+.
T Consensus 460 ---------------------------------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~ldG~~ 504 (791)
T 3m0c_C 460 ---------------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK 504 (791)
T ss_dssp -----------------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS
T ss_pred ---------------------------------cceeEEEecCCCCcceeeeeecCCcEEEEecC--CCeEEEEeCCCCe
Confidence 11234455578899999999999999999988 7899999999999
Q ss_pred cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCC-CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeC
Q psy14257 480 RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS-DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDW 556 (841)
Q Consensus 480 ~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~-~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~ 556 (841)
+++++. ..+..|.|||||+..++|||+|.+. ++|++++++|+.+++++... +..|.||++. +++|||+|+
T Consensus 505 ~~~l~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~--l~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 505 RKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN--IQWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp EEEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS--CSCEEEEEEETTTTEEEEEET
T ss_pred EEEEEe-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC--CCCceEEEEecCCCeEEEEeC
Confidence 999987 6888999999999999999999876 89999999999999888653 7899999997 699999999
Q ss_pred CCCeEEEEec
Q psy14257 557 RTNSVIRANK 566 (841)
Q Consensus 557 ~~~~i~~~~~ 566 (841)
..++|.+++.
T Consensus 578 ~~~~I~~~d~ 587 (791)
T 3m0c_C 578 KLHSISSIDV 587 (791)
T ss_dssp TTTEEEEEET
T ss_pred CCCcEEEEec
Confidence 9999888875
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=500.13 Aligned_cols=339 Identities=27% Similarity=0.546 Sum_probs=294.3
Q ss_pred cccccC-CCCCccCceeecCCC-CceEEeecCCeeecCCCCceEeCCCCCCCCeEEeccCccccccccccc---cEEEEe
Q psy14257 171 YLHPCE-AWGTCSQDCEPSVSN-NSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTF---NVIALI 245 (841)
Q Consensus 171 ~~~eC~-~~~~Cs~~C~~~~~~-g~~~C~C~~G~~l~~d~~~C~~~~~~~~~p~ll~s~~~~I~~~~~~~~---~~~~l~ 245 (841)
..+||. .++.|+|.|.++ + ++|+|.|++||.|..++++|.+. .++|+|++...|+++.++.. .....+
T Consensus 264 ~~n~C~~~ng~C~~~C~~~--~~~~~~C~C~~g~~l~~d~~~C~~~-----~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~ 336 (628)
T 4a0p_A 264 GWNECASSNGHCSHLCLAV--PVGGFVCGCPAHYSLNADNRTCSAP-----TTFLLFSQKSAINRMVIDEQQSPDIILPI 336 (628)
T ss_dssp CCCTTTTTGGGCSSEEEEE--TTTEEEEECSTTCEECTTSSCEECC-----SSEEEEEETTEEEEECCCTTCCCCEECCC
T ss_pred cceEeccCCCCcchhhhcC--CCCCeeEEcCCCcEecccCCcCccc-----cceeeeeccceEEEEecccccCceEEEEe
Confidence 468997 457899999998 7 99999999999999999999864 68999999999999988753 233345
Q ss_pred ccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeC------CCCCccceEEeeecCceeEEEeeec
Q psy14257 246 SSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT------GLSTAEGLAVDWIGKNLYMFWAFWS 319 (841)
Q Consensus 246 ~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~------~l~~p~giavD~~~~~~y~~~td~~ 319 (841)
.++++++|||||..+++ |||+|...++|+|+.++|.. ..+++.. ++..|+|||+||.+
T Consensus 337 ~~~~~~~~ld~d~~~~~--iy~sD~~~~~I~r~~~~g~~---~~~v~~~~~~~~~~~~~p~glAvD~~~----------- 400 (628)
T 4a0p_A 337 HSLRNVRAIDYDPLDKQ--LYWIDSRQNMIRKAQEDGSQ---GFTVVVSSVPSQNLEIQPYDLSIDIYS----------- 400 (628)
T ss_dssp TTCSCEEEEEEETTTTE--EEEEETTTTEEEEEETTSCS---CEEEEC--------CCCEEEEEEETTT-----------
T ss_pred hhcCCceEEEEecCCCe--EEEEecCcceEEEEEcCCCC---ceEEEEcccccccccCCcceEEeeccC-----------
Confidence 67889999999998877 99999999999999887542 3344432 45566666666554
Q ss_pred CCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccc
Q psy14257 320 LSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVG 399 (841)
Q Consensus 320 ~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~ 399 (841)
T Consensus 401 -------------------------------------------------------------------------------- 400 (628)
T 4a0p_A 401 -------------------------------------------------------------------------------- 400 (628)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC
Q psy14257 400 IPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH 479 (841)
Q Consensus 400 i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~ 479 (841)
++|||+|...++|++++++|+.+++++...+.+|++|||||.+|+||||||+...++|+|++|||+.
T Consensus 401 -------------~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~ 467 (628)
T 4a0p_A 401 -------------RYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE 467 (628)
T ss_dssp -------------TEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS
T ss_pred -------------CeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC
Confidence 8889999889999999999999989888889999999999999999999998422389999999999
Q ss_pred cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCC
Q psy14257 480 RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN 559 (841)
Q Consensus 480 ~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~ 559 (841)
+++++. ..+.+|+||+||+.+++|||+|..+++|++++++|+.++++... .+.+|+||++++++|||+||.++
T Consensus 468 ~~~l~~-----~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~~~ly~tD~~~~ 540 (628)
T 4a0p_A 468 REVLFF-----SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFENWLYWIDKQQQ 540 (628)
T ss_dssp CEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEETTEEEEEETTTT
T ss_pred cEEEEe-----ccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEECCEEEEEECCCC
Confidence 999987 68999999999999999999999999999999999999998864 37899999999999999999999
Q ss_pred eEEEEeccCCcceEEEecccCCCce---ec---cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 560 SVIRANKWNGSDVTLIQRTLTQPFI---YV---NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i~~~~~~p~~---~h---~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
+|.+++|.+|+..+++...+.+|++ +| .++...|||..+||+|+|+|++.+.+.++|+||.||.|.+|+++|-
T Consensus 541 ~i~~~~k~~G~~~~~i~~~~~~~~~i~~~~~~~~~~~~~n~c~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~~~ 619 (628)
T 4a0p_A 541 MIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCG 619 (628)
T ss_dssp EEEEEETTSSSCCEEEECCCTTEEEEEEECCCCHHHHHHSTTTTGGGGCSSEEEECTTSCEEEECCTTEEECTTSSCEE
T ss_pred eEEEEECcCCCCcEEEeccCCCCcceEEEeecccCccccccCCCCCCCcchhcccCCCCCeeeeCCCCCEECCCCCcCC
Confidence 9999999999999888877778877 44 1234789999999999999999988889999999999999999998
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=491.95 Aligned_cols=438 Identities=28% Similarity=0.542 Sum_probs=273.2
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCC-CeEecCCCCCCCCCCcccCCCCCCCcc-----------
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNET-LRCIPLAWACDGQPDCGLNDTSDEDHC----------- 69 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~-~~Ci~~~~~Cdg~~dC~~~d~sde~~C----------- 69 (841)
+||+..|+|||..||.|||||....|...+|...+|+|.+. ++|||..|+|||..||. |||||.+|
T Consensus 17 ~ci~~~~~Cdg~~dC~d~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~--dgsDE~~C~~~~C~~~~f~ 94 (699)
T 1n7d_A 17 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD--NGSDEQGCPPKTCSQDEFR 94 (699)
T ss_dssp ---------------------------CCSCSSSSCCCCC--CCCCCSSSTTSSSCCC---CCCTTTSCSSCCCCSSCCC
T ss_pred cEEcHHhcCCCcccCCCCCCCCccccCCcCCCCCccCCCCCCCceeCcceecCCcccCC--CCcccCcccccccccCcEE
Confidence 59999999999999999999994459888999999999743 58999999999999999 99999876
Q ss_pred ---------------ccCCCCCCCCCCccC--CCCCCC-CC--------------------------------------C
Q psy14257 70 ---------------VNDCTDWSDETNCTH--SGNRTI-SA--------------------------------------P 93 (841)
Q Consensus 70 ---------------~~dC~~~~de~~C~~--c~~~~~-c~--------------------------------------~ 93 (841)
..||.|++||.+|.. |.+.+| |. .
T Consensus 95 C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~ 174 (699)
T 1n7d_A 95 CHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSS 174 (699)
T ss_dssp SSCC----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCC
T ss_pred cCCCCEecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCCcccchhcccCCCCcCCCCcccccccCCCcccccCCCC
Confidence 479999999999875 655544 31 1
Q ss_pred CCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc--ccccccCCCCC-C----------------------Cccc-
Q psy14257 94 ACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC--DEKQCLRSDCH-H----------------------DCYN- 147 (841)
Q Consensus 94 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C--~eC~~~~~~C~-~----------------------~C~~- 147 (841)
.|.+.+|.|.+ +.||+.+++|||..+|.+|+||..| .+|......|. . .|.+
T Consensus 175 ~C~~~~f~C~~--g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~C~~~ 252 (699)
T 1n7d_A 175 PCSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNV 252 (699)
T ss_dssp CSCSSSCCCSS--SCCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESSSSCEEETTCCSSSCCCSSSSCSSSSTTCC
T ss_pred CCCCcceecCC--CceEechhccCCCCCCCCCcccccCCCcccCCCcEecCCCceeeeecccCCCCCCCCCCccCCCCCC
Confidence 46778899988 8999999999999999999999887 24432211221 0 1221
Q ss_pred ----CCCCcEE---ecCCCceecCCCCccc----------cccccC-CCCCccCceeecCCCCceEEeecCCeeecCCCC
Q psy14257 148 ----TPEGFMC---VCPRDMYLQPDLITCS----------YLHPCE-AWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMF 209 (841)
Q Consensus 148 ----~~g~~~C---~C~~Gy~l~~d~~~C~----------~~~eC~-~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~ 209 (841)
.++.|.| .|.+..........|. +++||. ..+.|++.|.++ .++|+|.|++||.+ .+++
T Consensus 253 ~~C~~~~~~~C~~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~--~~~~~C~C~~G~~~-~~~~ 329 (699)
T 1n7d_A 253 TLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDL--KIGYECLCPDGFQL-VAQR 329 (699)
T ss_dssp CCCCSTTCCCCTTSCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCC--TTCCCCCCCSSSCC-CSSS
T ss_pred CcccCCCceecCCCcEeCCcccccccceecCcccccccccccccccccccCcCCCcccC--CCCcEEeCCCCeEc-CCCC
Confidence 1222333 1222221111112222 467886 356799999999 99999999999998 6788
Q ss_pred ceEeCCCCCCCCeEEeccCccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceE
Q psy14257 210 TCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNID 289 (841)
Q Consensus 210 ~C~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~ 289 (841)
.|.++++... +.. -.+ +- ++.. ..+.- ....+ |-.+ .++.+ -+
T Consensus 330 ~C~dideC~~-~~~-C~~---~C-~n~~-g~y~C-------------~C~~G----~~~~----------~~~~~---C~ 372 (699)
T 1n7d_A 330 RCEDIDECQD-PDT-CSQ---LC-VNLE-GGYKC-------------QCEEG----FQLD----------PHTKA---CK 372 (699)
T ss_dssp CCCCCCCCSS-SSS-CTT---TC-CBCS-SCBCC-------------CCCSS----CBCC----------SSCCC---CB
T ss_pred cccCccccCC-CCc-ccc---cc-ccCC-CCeee-------------eeecc----cccC----------CCCCc---cc
Confidence 9988744321 100 000 00 0000 00000 00000 0000 00000 00
Q ss_pred EEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC
Q psy14257 290 VVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH 369 (841)
Q Consensus 290 ~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~ 369 (841)
+++.. ..+++ + ....|.++++++.....++ ..+..|.||++|+.+++|||+|..
T Consensus 373 -------------~~~~~-~~ll~--~---------~~~~I~~id~~~~~~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~ 426 (699)
T 1n7d_A 373 -------------AVGSI-AYLFF--T---------NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLS 426 (699)
T ss_dssp -------------CCSSC-CCBCC--C---------CTTC-CEECTTSCCEECCS-CCCTTCCCCEEETTTTEEEECCTT
T ss_pred -------------ccccc-eeEEe--c---------CccceEEEeCCCCcceeee-ccCcceEEEccccccCeEEEEecC
Confidence 00000 01111 0 1125666666665444333 346788899999888888888887
Q ss_pred CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeE
Q psy14257 370 LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449 (841)
Q Consensus 370 ~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~gi 449 (841)
.++|++++++|... +....+++...+..|.||
T Consensus 427 ~~~I~~~~~~g~~~------------------------------------------------~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 427 QRMICSTQLDRAHG------------------------------------------------VSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp TTSBEEEESCCCCC-------------------------------------------------CCCCCBCCSCC--CCCE
T ss_pred CCeEEEEecCCCCC------------------------------------------------CcceEEEEeCCCCCcceE
Confidence 77777777665210 011122333456789999
Q ss_pred EEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCC-CeEEEEEcCCCee
Q psy14257 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS-DSIHTVTYDGKDH 528 (841)
Q Consensus 450 avd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~-~~I~~~~~dG~~~ 528 (841)
|||+..+.|||+|.. ..+|++++++|..+++++. ..+..|.||+||+.+++|||+|... ++|++++++|+.+
T Consensus 459 avD~~~g~LY~tD~~--~~~I~v~d~dg~~~~~l~~-----~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSV--LGTVSVADTKGVKRKTLFR-----EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp ECCCSSSBCEECCTT--TSCEEEEBSSSCCEEEECC-----CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred EEEeeCCcEEEEecc--CCeEEEEecCCCceEEEEe-----CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence 999989999999987 7899999999998888776 5688999999999999999999875 8999999999988
Q ss_pred EEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEec
Q psy14257 529 HVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 529 ~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~ 566 (841)
++++.. .+..|.||++. +++|||+|+.+++|.+++.
T Consensus 532 ~~l~~~--~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 532 YSLVTE--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CEESCS--SCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred eEEEeC--CCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 877654 37889999995 6899999999888887764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=431.02 Aligned_cols=300 Identities=40% Similarity=0.857 Sum_probs=264.6
Q ss_pred CCCCeEEeccCccccccccccc--cEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCC
Q psy14257 218 DSSPFVIFSNRHELRGVDLRTF--NVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295 (841)
Q Consensus 218 ~~~p~ll~s~~~~I~~~~~~~~--~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~ 295 (841)
+++|+|+|+++++|+++++++. ....++.++++++||||+..++. |||+|...++|+|++++++. ..++++..+
T Consensus 2 g~~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~--lyw~D~~~~~I~r~~~~g~~--~~~~~~~~~ 77 (318)
T 3sov_A 2 GSAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGL--IYWSDVSEEAIKRTEFNKTE--SVQNVVVSG 77 (318)
T ss_dssp --CCEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTE--EEEEETTTTEEEEEETTSSS--CCCEEEEEC
T ss_pred CCccEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCE--EEEEECCCCcEEEEEccCCC--ceEEEEcCC
Confidence 4689999999999999999886 46677788899999999998777 99999999999999987653 234555666
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEE
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 375 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~ 375 (841)
+..|+|||+||.+
T Consensus 78 l~~p~glavd~~~------------------------------------------------------------------- 90 (318)
T 3sov_A 78 LLSPDGLACDWLG------------------------------------------------------------------- 90 (318)
T ss_dssp CSCCCEEEEETTT-------------------------------------------------------------------
T ss_pred CCCccEEEEEcCC-------------------------------------------------------------------
Confidence 7777777777654
Q ss_pred EEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCC
Q psy14257 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455 (841)
Q Consensus 376 ~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~ 455 (841)
++|||+|...++|++++++|+.+++++...+..|+|||+||..
T Consensus 91 -------------------------------------g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 91 -------------------------------------EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp -------------------------------------TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG
T ss_pred -------------------------------------CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC
Confidence 7778888778888888888888888887788999999999999
Q ss_pred CeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC
Q psy14257 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH 535 (841)
Q Consensus 456 g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~ 535 (841)
|+|||+|++ ..++|+|+++||+.+++++. ..+.+|+||++|+.+++|||+|...++|++++++|+.+++++..
T Consensus 134 g~ly~td~~-~~~~I~r~~~dG~~~~~~~~-----~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~- 206 (318)
T 3sov_A 134 GFMYWTDWG-EVPKIERAGMDGSSRFIIIN-----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG- 206 (318)
T ss_dssp TEEEEEECS-SSCEEEEEETTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-
T ss_pred CEEEEEecC-CCCEEEEEEcCCCCeEEEEE-----CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC-
Confidence 999999987 36899999999999998886 67899999999999999999999999999999999999988863
Q ss_pred CCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcccCCCCCCCCCCccccccCC
Q psy14257 536 DSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVKKSPCEMNNGNCSHLCLIGM 610 (841)
Q Consensus 536 ~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~~n~C~~~ng~Cs~lC~~~~ 610 (841)
.+.+|+||++++++|||+||.+++|.++++.+|+..+.+...+.+|++ +| +||...|||..+||+|+|+|++.+
T Consensus 207 -~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~q~~~~n~C~~~ng~Cs~~C~~~~ 285 (318)
T 3sov_A 207 -SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSP 285 (318)
T ss_dssp -CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGGGSCCCCCTTTTTGGGCSSEEEECS
T ss_pred -CCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEeccccccccccccccCCCCcceEEecCC
Confidence 378999999999999999999999999999999988888877888988 56 889899999999999999999998
Q ss_pred CC-ceeeeCCCCceeecCCCcccc
Q psy14257 611 NG-TYKCQCPHVMKLMSDNKTCQV 633 (841)
Q Consensus 611 ~~-~~~C~Cp~g~~l~~d~~tC~~ 633 (841)
.+ +|+|+||+||.|.+|+++|..
T Consensus 286 ~~~~~~C~C~~g~~l~~d~~~c~~ 309 (318)
T 3sov_A 286 VKPFYQCACPTGVKLLENGKTCKD 309 (318)
T ss_dssp STTSEEEECSTTCCBCTTSSCBCC
T ss_pred CCCCeEEECCCCCEECCCCCCCCC
Confidence 65 599999999999999999983
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=415.17 Aligned_cols=299 Identities=35% Similarity=0.713 Sum_probs=258.6
Q ss_pred CCeEEeccCccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCC---cccceEEEEeCCC
Q psy14257 220 SPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGN---SLSNIDVVVQTGL 296 (841)
Q Consensus 220 ~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~---~~~~~~~~~~~~l 296 (841)
+|+|+|++.++|+++++++.++..+++.+.++.+++|+...+. |||+|...++|+++++++. + ..++++..++
T Consensus 1 ~~~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~--ly~~D~~~~~I~~~~~~g~~~~~--~~~~~~~~~~ 76 (316)
T 1ijq_A 1 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVS--SYDTVISRDI 76 (316)
T ss_dssp CCEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTE--EEEEETTTTEEEEEEC----------CEEEECSSC
T ss_pred CCEEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCE--EEEEECCCCcEEEEECCCCCCCc--ccEEEEeCCC
Confidence 4899999999999999999888888888999999999987766 9999999999999988752 2 2334444455
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEE
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESV 376 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~ 376 (841)
..|.|||+||.+
T Consensus 77 ~~p~glavd~~~-------------------------------------------------------------------- 88 (316)
T 1ijq_A 77 QAPDGLAVDWIH-------------------------------------------------------------------- 88 (316)
T ss_dssp SCCCEEEEETTT--------------------------------------------------------------------
T ss_pred CCcCEEEEeecC--------------------------------------------------------------------
Confidence 566666666543
Q ss_pred EecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCC
Q psy14257 377 RVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG 456 (841)
Q Consensus 377 ~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g 456 (841)
++|||+|...++|.+++++|+.+++++...+..|++||+||.+|
T Consensus 89 ------------------------------------~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 89 ------------------------------------SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG 132 (316)
T ss_dssp ------------------------------------TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred ------------------------------------CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC
Confidence 67777777778888888888888888777789999999999999
Q ss_pred eEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC
Q psy14257 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD 536 (841)
Q Consensus 457 ~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~ 536 (841)
+|||+|++. .++|+|+++||+.+++++. ..+.+|+||++|+.+++|||+|...++|++++++|+.+++++....
T Consensus 133 ~ly~~d~~~-~~~I~~~~~dG~~~~~~~~-----~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~ 206 (316)
T 1ijq_A 133 FMYWTDWGT-PAKIKKGGLNGVDIYSLVT-----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 206 (316)
T ss_dssp EEEEEECSS-SCEEEEEETTSCCEEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT
T ss_pred EEEEEccCC-CCeEEEEcCCCCCeEEEEE-----CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCC
Confidence 999999972 3899999999999988876 5789999999999999999999999999999999999998887545
Q ss_pred CCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcccCCCCCC---CCCCcccccc
Q psy14257 537 SLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVKKSPCEMN---NGNCSHLCLI 608 (841)
Q Consensus 537 ~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~~n~C~~~---ng~Cs~lC~~ 608 (841)
.+.+|+||++++++|||+||.+++|.++++.+|+..+.+...+..|++ +| +||.+.|+|..+ ||+|+|+|++
T Consensus 207 ~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~~C~~ 286 (316)
T 1ijq_A 207 RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLP 286 (316)
T ss_dssp TTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCCTTSSSSSGGGGCSSEEEE
T ss_pred ccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEeccccCCcccccccccccCCCCcCcccCC
Confidence 678999999999999999999999999999999988888877888988 55 889999999998 9999999998
Q ss_pred CCC-----CceeeeCCCCceeecCCCccc
Q psy14257 609 GMN-----GTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 609 ~~~-----~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
.+. ++|+|+||+||.|.+|+++|.
T Consensus 287 ~p~~~~~~~~~~C~C~~g~~l~~d~~~C~ 315 (316)
T 1ijq_A 287 APQINPHSPKFTCACPDGMLLARDMRSCL 315 (316)
T ss_dssp CCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred CccccCCCCCeEeeCCCCCEECCCCCccC
Confidence 863 569999999999999999997
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=302.10 Aligned_cols=311 Identities=22% Similarity=0.385 Sum_probs=221.7
Q ss_pred CeEecC--CCCCCCCCCCCCCCC---Cccc---ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCC
Q psy14257 107 RTCIPK--ALVCDGEPACFNGED---EMFC---DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAW 178 (841)
Q Consensus 107 ~~Ci~~--~~~Cdg~~~C~~g~d---e~~C---~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~ 178 (841)
+.|++. ++.| .|+.||. +..| +||. .++.|++.|.|++|+|.|.|.+||.+.+++++|+++.+....
T Consensus 12 ~~C~~~~~~y~C----~C~~G~~~~~~~~C~dideC~-~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~~~~~l 86 (400)
T 3p5b_L 12 HVCNDLKIGYEC----LCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 86 (400)
T ss_dssp SEEEECSSSEEE----ECCTTEEECSSSCEEECCCCS-TTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCCSTTSCEE
T ss_pred CEeECCCCCeEE----ECCCCCCcCCCCcccCchhhh-ccCCCCCccCCCccceeeeccccccccccccceeecccccee
Confidence 566654 7889 8999994 6679 8998 457999999999999999999999999999999887543100
Q ss_pred CCccCcee---ecCCCCceEEeecCCeeecCCCCceEeCCCCCCCCeEEecc--Ccccccccccc----ccEEEEec-cc
Q psy14257 179 GTCSQDCE---PSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSN--RHELRGVDLRT----FNVIALIS-SL 248 (841)
Q Consensus 179 ~~Cs~~C~---~~~~~g~~~C~C~~G~~l~~d~~~C~~~~~~~~~p~ll~s~--~~~I~~~~~~~----~~~~~l~~-~~ 248 (841)
-.-.+.-+ .. ....+. .+......-..++++.....|+|++ .+.|+++++++ .....++. .+
T Consensus 87 l~~~~~~I~~i~l-~~~~~~-------~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 87 FFTNRHEVRKMTL-DRSEYT-------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEETTEEEEECT-TSCSCE-------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred EEeccceeEEEcc-CCccee-------EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 00001000 00 011111 1111112222232233455677775 46788888876 23445554 56
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
..+.++++|...++ |||+|...++|.+++++|. ..++++..++..|.||||||.+
T Consensus 159 ~~p~glavD~~~~~--lY~~d~~~~~I~~~~~~g~---~~~~l~~~~~~~P~~iavdp~~-------------------- 213 (400)
T 3p5b_L 159 QAPDGLAVDWIHSN--IYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVH-------------------- 213 (400)
T ss_dssp SCEEEEEEETTTTE--EEEEETTTTEEEEECTTTC---SEEEEEECSSCCEEEEEEETTT--------------------
T ss_pred CCcccEEEEecCCc--eEEEECCCCeEEEEeCCCC---ceEEEEeCCCCCcceEEEeccc--------------------
Confidence 66766666655566 9999999999999988764 3556666677777777777643
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcc
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~av 408 (841)
T Consensus 214 -------------------------------------------------------------------------------- 213 (400)
T 3p5b_L 214 -------------------------------------------------------------------------------- 213 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEecC-CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec
Q psy14257 409 LWIGKNLYWVESN-LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD 487 (841)
Q Consensus 409 dw~~~~LY~tD~~-~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~ 487 (841)
+.|||||.. .++|++++++|+.+++++..++..|+|||+|+.++.|||+|+. ..+|+++++||+.+++++..
T Consensus 214 ----g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~- 286 (400)
T 3p5b_L 214 ----GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILED- 286 (400)
T ss_dssp ----TEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCCEEEEEC-
T ss_pred ----CeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC--CCEEEEEeCCCCccEEEEeC-
Confidence 334444433 2567777777777777777778999999999999999999988 78999999999999998862
Q ss_pred ccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE-cCCCeeEEEEcCCCCCCcceEEEEecC
Q psy14257 488 LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT-YDGKDHHVVLSNHDSLTHPFAIALFEN 549 (841)
Q Consensus 488 ~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~-~dG~~~~~i~~~~~~l~~P~gla~~~~ 549 (841)
...+..|.||+++ +++|||+|..+++|.+++ .+|+.++++... +.+|++|+++..
T Consensus 287 --~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~---~~~p~~i~v~~~ 342 (400)
T 3p5b_L 287 --EKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAEN---LLSPEDMVLFHN 342 (400)
T ss_dssp --SSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEECS---CSCEEEEEEESG
T ss_pred --CCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEecC---CCCCceEEEEee
Confidence 1357899999996 689999999999999999 789888888643 678999999764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=302.89 Aligned_cols=301 Identities=22% Similarity=0.417 Sum_probs=194.6
Q ss_pred CCCCCCCCCCCCCCC----Cccc---ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccC--
Q psy14257 113 ALVCDGEPACFNGED----EMFC---DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQ-- 183 (841)
Q Consensus 113 ~~~Cdg~~~C~~g~d----e~~C---~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~-- 183 (841)
++.| .|+.||. +..| +||. .++.|++.|.|++|+|.|.|++||.+.+++++|+..++ ...-..+.
T Consensus 23 ~~~C----~C~~G~~l~~~~~~C~d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~~~-~~~l~~~~~~ 96 (386)
T 3v65_B 23 AVQC----TCHTGYRLTEDGRTCQDVNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPVLLFANRI 96 (386)
T ss_dssp ----------------------------------CCTTEEC-----CCEECCTTEEECTTSSCEEECSS-CCEEEEECBS
T ss_pred CcEe----ECCCCceECCCCCccCccceeC-CcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCccc-cceeEeecCc
Confidence 6889 8999995 6679 7997 45799999999999999999999999999999997754 21111111
Q ss_pred -ce-eecCCCCceEEeecCCeeecCCCCceEeCCCCCCCCeEEecc--CccccccccccccEEEEe-ccccceeeecccc
Q psy14257 184 -DC-EPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSN--RHELRGVDLRTFNVIALI-SSLKNTIALDFYY 258 (841)
Q Consensus 184 -~C-~~~~~~g~~~C~C~~G~~l~~d~~~C~~~~~~~~~p~ll~s~--~~~I~~~~~~~~~~~~l~-~~~~~~~avd~~~ 258 (841)
.- ... ..+.+. .+......-..+.++.....|+|++ .+.|+++++++.....++ .++..+.+++++.
T Consensus 97 ~I~~i~~-~~~~~~-------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~ 168 (386)
T 3v65_B 97 DIRQVLP-HRSEYT-------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW 168 (386)
T ss_dssp CEEEECT-TSCCCE-------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEET
T ss_pred cceeecc-CCCcEE-------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEe
Confidence 00 000 011111 1111112222222233455677765 467889998887666654 3455665666655
Q ss_pred cCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC
Q psy14257 259 TPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE 338 (841)
Q Consensus 259 ~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~ 338 (841)
..+. |||+|...++|.+++++|. ..++++..++..|.||||||.+
T Consensus 169 ~~g~--lY~~d~~~~~I~~~~~dg~---~~~~l~~~~l~~P~giavdp~~------------------------------ 213 (386)
T 3v65_B 169 VHDK--LYWTDSGTSRIEVANLDGA---HRKVLLWQSLEKPRAIALHPME------------------------------ 213 (386)
T ss_dssp TTTE--EEEEETTTTEEEECBTTSC---SCEEEECSSCSCEEEEEEETTT------------------------------
T ss_pred CCCe--EEEEcCCCCeEEEEeCCCC---ceEEeecCCCCCCcEEEEEcCC------------------------------
Confidence 5566 9999999999999988754 3445555555666666666433
Q ss_pred ccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEE
Q psy14257 339 NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWV 418 (841)
Q Consensus 339 ~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~t 418 (841)
+.|||+
T Consensus 214 --------------------------------------------------------------------------g~ly~t 219 (386)
T 3v65_B 214 --------------------------------------------------------------------------GTIYWT 219 (386)
T ss_dssp --------------------------------------------------------------------------TEEEEE
T ss_pred --------------------------------------------------------------------------CeEEEe
Confidence 444444
Q ss_pred ecCC-CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCce
Q psy14257 419 ESNL-DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPN 497 (841)
Q Consensus 419 D~~~-~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~ 497 (841)
|... ++|++++++|+.+++++..++..|+|||+|+..++|||+|+. .++|++++++|+.++.++. ..+..|.
T Consensus 220 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~-----~~~~~P~ 292 (386)
T 3v65_B 220 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK--HHVIERANLDGSHRKAVIS-----QGLPHPF 292 (386)
T ss_dssp ECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT--TTEEEEECTTSCSCEEEEC-----SSCSSEE
T ss_pred ccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC--CCEEEEEeCCCCeeEEEEE-----CCCCCce
Confidence 4444 567777777777777777778899999999999999999988 7899999999999988876 5788999
Q ss_pred eEEEeccCCEEEEEeCCCCeEEEEE-cCCCeeEEEEcCCCCCCcceEEEEec
Q psy14257 498 GLTLDYQLTRIYWIDAKSDSIHTVT-YDGKDHHVVLSNHDSLTHPFAIALFE 548 (841)
Q Consensus 498 glalD~~~~~LYw~d~~~~~I~~~~-~dG~~~~~i~~~~~~l~~P~gla~~~ 548 (841)
||+++ +++|||+|..+++|.+++ ++|..++++... +..|++|+++.
T Consensus 293 giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~---~~~p~gi~v~~ 339 (386)
T 3v65_B 293 AITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRNK---LHFPMDIHTLH 339 (386)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECS---CSCCCCEEEES
T ss_pred EEEEE--CCEEEEeeCCCCeEEEEECCCCcceEEEccC---CCCCceEEEEc
Confidence 99995 689999999999999999 789988888753 68899999864
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=291.44 Aligned_cols=287 Identities=22% Similarity=0.394 Sum_probs=198.1
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCcc---CceeecCCCCceEEeecCCeeecCCC
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCS---QDCEPSVSNNSYKCTCHAGYELEPDM 208 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs---~~C~~~~~~g~~~C~C~~G~~l~~d~ 208 (841)
+||. .++.|+|.|.|++|+|.|.|++||.|.+|+++|+..++ ...-..+ ..-.-......+. .+....
T Consensus 2 ~ec~-~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~-------~~~~~~ 72 (349)
T 3v64_C 2 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT-------LLLNNL 72 (349)
T ss_dssp --------CCSSEECCC---CCEECCTTEEECTTSSCEEESSS-CCEEEEECBSCEEEECTTSCCEE-------EEECSC
T ss_pred cccC-CCCCCcCeeecCCCCeEEECCCCccCCCCCCccccccc-CceeEeecccceEEEeCCCCeeE-------EeecCC
Confidence 5787 67899999999999999999999999999999988764 2111111 1110000011111 011111
Q ss_pred CceEeCCCCCCCCeEEecc--CccccccccccccEEEEe-ccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcc
Q psy14257 209 FTCKSKSKNDSSPFVIFSN--RHELRGVDLRTFNVIALI-SSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSL 285 (841)
Q Consensus 209 ~~C~~~~~~~~~p~ll~s~--~~~I~~~~~~~~~~~~l~-~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~ 285 (841)
..-..+.++.....|+|++ .+.|+++++++.....++ .++..+.++++|...++ |||+|...++|.+++++|.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~--ly~~d~~~~~I~~~~~dG~-- 148 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK--LYWTDSGTSRIEVANLDGA-- 148 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE--EEEEETTTTEEEEEETTSC--
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe--EEEEcCCCCeEEEEcCCCC--
Confidence 2222232233455677765 567899999887665554 45566666666655566 9999999999999988754
Q ss_pred cceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEE
Q psy14257 286 SNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYW 365 (841)
Q Consensus 286 ~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYw 365 (841)
..++++..++..|.||||||.+
T Consensus 149 -~~~~l~~~~l~~P~~iavdp~~--------------------------------------------------------- 170 (349)
T 3v64_C 149 -HRKVLLWQSLEKPRAIALHPME--------------------------------------------------------- 170 (349)
T ss_dssp -SCEEEECTTCSCEEEEEEETTT---------------------------------------------------------
T ss_pred -ceEEEEeCCCCCcceEEEecCc---------------------------------------------------------
Confidence 3445555566666666666533
Q ss_pred EeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC-CcEEEEccCCceEEEEecCCCC
Q psy14257 366 CDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-DQIEVAKLSGQFRRTLIAGDME 444 (841)
Q Consensus 366 aD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-~~I~v~~~~G~~~~~l~~~~l~ 444 (841)
+.|||+|... ++|++++++|+.+++++..++.
T Consensus 171 -----------------------------------------------g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~ 203 (349)
T 3v64_C 171 -----------------------------------------------GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF 203 (349)
T ss_dssp -----------------------------------------------TEEEEEECSSSCEEEEEETTSCSCEESCCSSCS
T ss_pred -----------------------------------------------CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence 4444444444 5666777777666666666788
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE-c
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT-Y 523 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~-~ 523 (841)
.|+|||+|+.++.|||+|+. .++|+++++||+.+++++. ..+..|.||+++ +++|||+|..+++|.+++ +
T Consensus 204 ~PnGla~d~~~~~lY~aD~~--~~~I~~~~~dG~~~~~~~~-----~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~ 274 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAK--HHVIERANLDGSHRKAVIS-----QGLPHPFAITVF--EDSLYWTDWHTKSINSANKF 274 (349)
T ss_dssp CEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEC-----SSCSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEeCCCCEEEEEECC--CCEEEEEeCCCCceEEEEe-----CCCCCceEEEEE--CCEEEEecCCCCeEEEEEcc
Confidence 99999999999999999998 7899999999999988876 568999999995 689999999999999999 7
Q ss_pred CCCeeEEEEcCCCCCCcceEEEEec
Q psy14257 524 DGKDHHVVLSNHDSLTHPFAIALFE 548 (841)
Q Consensus 524 dG~~~~~i~~~~~~l~~P~gla~~~ 548 (841)
+|+.++++... +.+|++|+++.
T Consensus 275 ~G~~~~~i~~~---~~~p~gi~v~~ 296 (349)
T 3v64_C 275 TGKNQEIIRNK---LHFPMDIHTLH 296 (349)
T ss_dssp TCCSCEEEECS---CSCCCCEEEEC
T ss_pred CCCccEEeccC---CCCCceEEEEc
Confidence 89988888753 67899999865
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=250.82 Aligned_cols=239 Identities=28% Similarity=0.530 Sum_probs=198.8
Q ss_pred CEEEEccCCCcccc-----ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCC
Q psy14257 329 GIEKAGMHGENRSP-----LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC 403 (841)
Q Consensus 329 ~I~~~~~dG~~~~~-----l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~ 403 (841)
+|.|++++|+..+. +...+...|.||++|+.+++|||+|...++|.+++++|+..+.+.... +...
T Consensus 11 ~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~p 81 (267)
T 1npe_A 11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD---------LGSP 81 (267)
T ss_dssp EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---------CCCE
T ss_pred eEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC---------CCCc
Confidence 89999999987543 333356789999999999999999999999999999998766543211 1111
Q ss_pred CCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 404 RPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 404 ~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
..+++|+.+++|||+|...++|.+++++|+..++++..++..|++|++||.+|+|||++++...++|+++.+||+.++++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~ 161 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence 23478888899999999999999999999887777777788999999999889999999864357999999999988877
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEE
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIR 563 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~ 563 (841)
.. ..+..|+||++|+.+++|||+|...++|.+++++|..+..+... +.+|+||++++++|||+++.+++|.+
T Consensus 162 ~~-----~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 162 AQ-----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EC-----TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEETTEEEEEETTTTEEEE
T ss_pred EE-----CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEeCCEEEEEECCCCeEEE
Confidence 65 56789999999988899999999999999999999887777653 67899999999999999999999999
Q ss_pred EeccCCcceEEEecc-cCCCce
Q psy14257 564 ANKWNGSDVTLIQRT-LTQPFI 584 (841)
Q Consensus 564 ~~~~~g~~~~~i~~~-~~~p~~ 584 (841)
+++.+|+....+... ...|.+
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~g 255 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYG 255 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCC
T ss_pred EeCCCCCceEEEccccccccce
Confidence 999888877666432 224555
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=235.70 Aligned_cols=253 Identities=24% Similarity=0.397 Sum_probs=194.8
Q ss_pred CeEEeccCccccccccccccE-----EEEec-cccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeC
Q psy14257 221 PFVIFSNRHELRGVDLRTFNV-----IALIS-SLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT 294 (841)
Q Consensus 221 p~ll~s~~~~I~~~~~~~~~~-----~~l~~-~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~ 294 (841)
|+|+|++.+.|+++++++... ..++. ..+++.+++|+...+. |||+|...++|++++++++. ...++..
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~--ly~~d~~~~~I~~~~~~g~~---~~~~~~~ 76 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV--VYWTDISEPSIGRASLHGGE---PTTIIRQ 76 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE--EEEEETTTTEEEEEESSSCC---CEEEECT
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE--EEEEECCCCEEEEEecCCCC---cEEEEEC
Confidence 678999989999999987542 23332 3467888888886666 99999999999999987653 3455666
Q ss_pred CCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEE
Q psy14257 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVE 374 (841)
Q Consensus 295 ~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~ 374 (841)
++..|.+||+||.+ .++||+|.+ .++|.+++++|+..+.+....+..|++|++|+.+++|||+|...
T Consensus 77 ~~~~p~~ia~d~~~--~~lyv~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~---- 143 (267)
T 1npe_A 77 DLGSPEGIALDHLG--RTIFWTDSQ-------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR---- 143 (267)
T ss_dssp TCCCEEEEEEETTT--TEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS----
T ss_pred CCCCccEEEEEecC--CeEEEEECC-------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC----
Confidence 77899999999865 455667654 35999999999888777777788999999999877777777541
Q ss_pred EEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCC
Q psy14257 375 SVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPR 454 (841)
Q Consensus 375 ~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~ 454 (841)
..++|.+++++|+..+++....+..|.+||+|+.
T Consensus 144 ----------------------------------------------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~ 177 (267)
T 1npe_A 144 ----------------------------------------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF 177 (267)
T ss_dssp ----------------------------------------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETT
T ss_pred ----------------------------------------------CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCC
Confidence 0234444555555444444456778999999998
Q ss_pred CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEc
Q psy14257 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLS 533 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~ 533 (841)
+++|||++.+ .++|++++++|..++.++. .+..|.||++| +++|||++...++|.+++++ |+..+++..
T Consensus 178 ~~~lyv~d~~--~~~I~~~~~~g~~~~~~~~------~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 178 SSQLCWVDAG--THRAECLNPAQPGRRKVLE------GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TTEEEEEETT--TTEEEEEETTEEEEEEEEE------CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCEEEEEECC--CCEEEEEecCCCceEEEec------CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 8999999988 7899999999977766654 56789999998 68999999999999999997 455555543
Q ss_pred CCCCCCcceEEEEecC
Q psy14257 534 NHDSLTHPFAIALFEN 549 (841)
Q Consensus 534 ~~~~l~~P~gla~~~~ 549 (841)
. ....|+||++..+
T Consensus 248 g--~~~~p~gi~~~~~ 261 (267)
T 1npe_A 248 H--KQTRLYGITIALS 261 (267)
T ss_dssp S--SCCCCCCEEEECS
T ss_pred c--cccccceeeecCc
Confidence 2 2457999998643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-25 Score=237.55 Aligned_cols=250 Identities=26% Similarity=0.484 Sum_probs=200.7
Q ss_pred ceEEEEecCCCcEEEEccCCce-EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc-EEEEEecccC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQF-RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR-SVIVRVDLLT 490 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~-~~i~~~~~~~ 490 (841)
-.|+++. .+.|.++++++.. ..+++..++..|.+|++|+..+.|||+|.. ..+|+|++++|+.. +.++.
T Consensus 5 p~ll~~~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~--~~~I~r~~~~g~~~~~~~~~----- 75 (318)
T 3sov_A 5 PLLLYAN--RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVV----- 75 (318)
T ss_dssp CEEEEEC--EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT--TTEEEEEETTSSSCCCEEEE-----
T ss_pred cEEEEEc--cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC--CCcEEEEEccCCCceEEEEc-----
Confidence 4678876 4689999999873 222333457789999999999999999987 78999999999853 34444
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCC-CCeEEEEecc
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWR-TNSVIRANKW 567 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~-~~~i~~~~~~ 567 (841)
..+..|.|||+|..+++|||+|...++|++++++|..++++... .+..|.||++. +++|||+||. .++|++++..
T Consensus 76 ~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 76 SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 47889999999998999999999999999999999988888754 37899999996 5899999986 5667666532
Q ss_pred CCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeE
Q psy14257 568 NGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREI 647 (841)
Q Consensus 568 ~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i 647 (841)
|+..+ .++.
T Consensus 154 -G~~~~-----------------------------------------------------------------~~~~----- 162 (318)
T 3sov_A 154 -GSSRF-----------------------------------------------------------------IIIN----- 162 (318)
T ss_dssp -SCSCE-----------------------------------------------------------------EEEC-----
T ss_pred -CCCeE-----------------------------------------------------------------EEEE-----
Confidence 11100 0000
Q ss_pred EEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCc
Q psy14257 648 RGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGG 727 (841)
Q Consensus 648 ~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (841)
.++..|.+|++|+.+++|||+|...++|++++++|+.
T Consensus 163 ------------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~------------------------- 199 (318)
T 3sov_A 163 ------------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN------------------------- 199 (318)
T ss_dssp ------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------------------
T ss_pred ------------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-------------------------
Confidence 1234578999999999999999999999999999987
Q ss_pred eEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec-CCcceEEEEcCCCCCCCcCCCceEEEEeCC
Q psy14257 728 QIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL-EGEYQTTILSNESNDTSTLSKISSIAVWPV 799 (841)
Q Consensus 728 ~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l-~g~~~~~~~~~~~~~~~~l~~p~~iavd~~ 799 (841)
+++++...+..|.|||+| .+.|||+ +...++|.+++. +|+.++++... +.+|.+|+|...
T Consensus 200 -~~~~~~~~~~~P~glav~--~~~lywt--d~~~~~V~~~~~~~G~~~~~i~~~-------~~~P~~i~v~~~ 260 (318)
T 3sov_A 200 -RQAVVKGSLPHPFALTLF--EDILYWT--DWSTHSILACNKYTGEGLREIHSD-------IFSPMDIHAFSQ 260 (318)
T ss_dssp -CEEEECSCCSCEEEEEEE--TTEEEEE--ETTTTEEEEEETTTCCSCEEEECC-------CSSCCCEEEECG
T ss_pred -eEEEecCCCCCceEEEEe--CCEEEEE--ecCCCeEEEEECCCCCceEEEeCC-------CCCCcEEEEecc
Confidence 666666678999999998 7899999 568899999998 68888788776 789999998644
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-24 Score=230.12 Aligned_cols=248 Identities=19% Similarity=0.406 Sum_probs=196.2
Q ss_pred eEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC----CCcEEEEEeccc
Q psy14257 414 NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG----EHRSVIVRVDLL 489 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG----~~~~~i~~~~~~ 489 (841)
.|+|+.. +.|.++++++.....++. .+..|.||++|+.++.|||+|.. ..+|++++++| +..+.++.
T Consensus 3 ~ll~~~~--~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~---- 73 (316)
T 1ijq_A 3 YLFFTNR--HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVIS---- 73 (316)
T ss_dssp EEEEECB--SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEEC----
T ss_pred EEEEECC--CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEe----
Confidence 5777764 579999999876555554 67899999999999999999987 78999999998 55555554
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCC-CeEEEEec
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRT-NSVIRANK 566 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~-~~i~~~~~ 566 (841)
..+..|.|||+|..+++|||+|...++|++++++|..+++++... +..|.+|++. +++|||+|+.. ++|++++.
T Consensus 74 -~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~--~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 74 -RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp -SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred -CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECC--CCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 567899999999889999999999999999999999888877643 6799999996 68999999875 66666553
Q ss_pred cCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCe
Q psy14257 567 WNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPRE 646 (841)
Q Consensus 567 ~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~ 646 (841)
. |+..+ .++
T Consensus 151 d-G~~~~-----------------------------------------------------------------~~~----- 159 (316)
T 1ijq_A 151 N-GVDIY-----------------------------------------------------------------SLV----- 159 (316)
T ss_dssp T-SCCEE-----------------------------------------------------------------EEE-----
T ss_pred C-CCCeE-----------------------------------------------------------------EEE-----
Confidence 1 11000 000
Q ss_pred EEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccC
Q psy14257 647 IRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVG 726 (841)
Q Consensus 647 i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (841)
...+..|.+|++|+.+++|||+|...++|++++++|+.
T Consensus 160 ------------------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~------------------------ 197 (316)
T 1ijq_A 160 ------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN------------------------ 197 (316)
T ss_dssp ------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------------------
T ss_pred ------------------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc------------------------
Confidence 01234678999999999999999999999999999987
Q ss_pred ceEEEEee--CCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec-CCcceEEEEcCCCCCCCcCCCceEEEEeCC
Q psy14257 727 GQIQLVVD--AGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL-EGEYQTTILSNESNDTSTLSKISSIAVWPV 799 (841)
Q Consensus 727 ~~~~~i~~--~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l-~g~~~~~~~~~~~~~~~~l~~p~~iavd~~ 799 (841)
+++++. ..+..|.|||+| .++|||+ +...++|.+++. +|+..+++..+ +..|.+|+|+..
T Consensus 198 --~~~~~~~~~~~~~P~giav~--~~~ly~~--d~~~~~V~~~~~~~g~~~~~i~~~-------~~~p~~i~v~~~ 260 (316)
T 1ijq_A 198 --RKTILEDEKRLAHPFSLAVF--EDKVFWT--DIINEAIFSANRLTGSDVNLLAEN-------LLSPEDMVLFHN 260 (316)
T ss_dssp --CEEEEECTTTTSSEEEEEEE--TTEEEEE--ETTTTEEEEEETTTCCCCEEEECS-------CSCCCCEEEESG
T ss_pred --eEEEeecCCccCCcEEEEEE--CCEEEEE--ECCCCeEEEEeCCCCcceEEEecC-------CCCceEEEEecc
Confidence 445554 347889999998 6899999 567899999986 78888888777 889999998753
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=215.26 Aligned_cols=262 Identities=13% Similarity=0.175 Sum_probs=198.4
Q ss_pred eeEEEecC-CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCC------CCCCCEEEEccC
Q psy14257 264 MVFWTDVI-DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSN------SSDGGIEKAGMH 336 (841)
Q Consensus 264 ~lyw~d~~-~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~------~~~~~I~~~~~d 336 (841)
.||+++.. .++|++++.+|.. .+.+.. + .+..|.++ + .|+|.+.....+.. .....|++.++|
T Consensus 27 ~iy~~n~~d~~~ly~~~~dg~~---~~~l~~-~--~~~~i~~~--g--~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 27 EVFFSNTNDNGRLYAMNIDGSN---IHKLSN-D--TAMYINAD--K--NYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEEEEEGGGTTEEEEEETTSCS---CEEEEE-E--EEEEEEEC--S--SEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEEEEeCCCCceEEEEcCCCCC---CEEccC-C--ceeeEEEc--C--CEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 49999754 5789999988754 333322 2 35556554 4 44455544321110 124579999999
Q ss_pred CCccccccccCcCCCceEEEEccCCEEEEEe---CCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccc
Q psy14257 337 GENRSPLVTKNIQWPSSLVIDYNQDILYWCD---SHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGK 413 (841)
Q Consensus 337 G~~~~~l~~~~~~~P~glavD~~~~~lYwaD---~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~ 413 (841)
|+.++.|... .+.++.+.+++|||+| .....|+++++||++++++..... ++++|+++
T Consensus 97 g~~~~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--------------~~~~~~g~ 157 (302)
T 3s25_A 97 GHGSTVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--------------FTCNTSDR 157 (302)
T ss_dssp SCCCEEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--------------CCSEEETT
T ss_pred CCcceEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--------------eEeeEECC
Confidence 9987766543 3457777899999999 577899999999999888764321 36799999
Q ss_pred eEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCC
Q psy14257 414 NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRG 493 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~ 493 (841)
.|||++.+..+|++++++|..++.+... +..++++|..++|||++|.. ..+|+|++|||+.+++|.. ..+
T Consensus 158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~-~~~I~~~~ldG~~~~~Lt~-----~~~ 227 (302)
T 3s25_A 158 YFYYNNPKNGQLYRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNR-DNAIVHVNINNPNPVVLTE-----ANI 227 (302)
T ss_dssp EEEEECTTTCCEEEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGG-TTEEEEECSSSCCCEECSC-----SCE
T ss_pred EEEEEeCCCceEEEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCC-CcEEEEEECCCCCeEEEeC-----CCc
Confidence 9999999889999999999998877543 44566788999999999974 4899999999999988865 333
Q ss_pred CCceeEEEeccCCEEEEE-eCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 494 AWPNGLTLDYQLTRIYWI-DAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~-d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
| .+|+.+++|||+ +...+.|+++++||+.++++.... ..+|++++++|||+||.+++|++++ .+|++.
T Consensus 228 --~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~~-----~~~i~i~~d~Iy~td~~~~~i~~~~-~dGs~~ 296 (302)
T 3s25_A 228 --E---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGE-----FCNINVTSQYVYFTDFVSNKEYCTS-TQNPDT 296 (302)
T ss_dssp --E---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEESC-----EEEEEECSSEEEEEETTTCCEEEEE-SSSCCS
T ss_pred --c---eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCCc-----cceEEEeCCEEEEEECCCCeEEEEE-CCCCCc
Confidence 2 377789999997 666789999999999999887642 3589999999999999999999986 566665
Q ss_pred EEE
Q psy14257 573 TLI 575 (841)
Q Consensus 573 ~~i 575 (841)
+.+
T Consensus 297 ~~l 299 (302)
T 3s25_A 297 IKA 299 (302)
T ss_dssp CEE
T ss_pred eEe
Confidence 433
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=203.32 Aligned_cols=252 Identities=15% Similarity=0.162 Sum_probs=173.7
Q ss_pred cccceeeeccccc--CCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCC
Q psy14257 247 SLKNTIALDFYYT--PTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSN 324 (841)
Q Consensus 247 ~~~~~~avd~~~~--~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~ 324 (841)
.+..+.+|.|+.. .+. |||+|.. ++|+++++.++. .. .+...+..|.+||+|+.++ +|++|++..
T Consensus 137 ~~~~P~gvavd~~s~~g~--Lyv~D~~-~~I~~id~~~g~---v~-~~~~~~~~P~giavd~dG~---lyVad~~~~--- 203 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDD--LYWVGQR-DAFRHVDFVNQY---VD-IKTTNIGQCADVNFTLNGD---MVVVDDQSS--- 203 (433)
T ss_dssp CCSCCCEEEECTTTTTCE--EEEECBT-SCEEEEETTTTE---EE-EECCCCSCEEEEEECTTCC---EEEEECCSC---
T ss_pred ccCCCceEEEccccCCCE--EEEEeCC-CCEEEEECCCCE---EE-EeecCCCCccEEEECCCCC---EEEEcCCCC---
Confidence 3566888888873 556 9999998 899999886654 22 3345778899999998764 566665431
Q ss_pred CCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 325 ~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
.....|.+...++..........+..|.||++|+.++.|||+|...++|+++++++
T Consensus 204 ~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~------------------------ 259 (433)
T 4hw6_A 204 DTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT------------------------ 259 (433)
T ss_dssp TTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT------------------------
T ss_pred cccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC------------------------
Confidence 11124666666555432222336788999999886666666665555555554431
Q ss_pred CCccccccceEEEEecCCCcEEEEccCCceEEEEe-cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC----
Q psy14257 405 PEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLI-AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH---- 479 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~-~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~---- 479 (841)
|...+.+. ......|.+||++|..++||++|.. +++|+++++|+..
T Consensus 260 ---------------------------g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~--~~~I~~~~~d~~~~~~~ 310 (433)
T 4hw6_A 260 ---------------------------GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG--KHCIYRVDYNRETGKLA 310 (433)
T ss_dssp ---------------------------CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT--TTEEEEEEBCTTTCCBC
T ss_pred ---------------------------CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC--CCEEEEEeCCCCCcccC
Confidence 22211221 1223456789999998889999988 7899999988542
Q ss_pred -cEEEEEe-cc--------cCCCCCCceeEEE---------eccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC-----
Q psy14257 480 -RSVIVRV-DL--------LTSRGAWPNGLTL---------DYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH----- 535 (841)
Q Consensus 480 -~~~i~~~-~~--------~~~~~~~P~glal---------D~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~----- 535 (841)
...+... +. ....+..|.||++ | .+++|||+|..+++|++++++|. +.++....
T Consensus 311 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~~G~-v~t~~G~g~~~~~ 388 (433)
T 4hw6_A 311 VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTPEGR-VTTYAGRGNSREW 388 (433)
T ss_dssp CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECTTSE-EEEEECCCTTCSS
T ss_pred cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECCCCC-EEEEEeCCCCCcc
Confidence 2334331 00 0124788999999 6 67999999999999999999884 44444321
Q ss_pred ----------CCCCcceEEEEe--cCeEEEEeCCCCeEEEEec
Q psy14257 536 ----------DSLTHPFAIALF--ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 536 ----------~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~ 566 (841)
..|.+|.||++. ++.||++|..+++|+++.+
T Consensus 389 G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 389 GYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 146789999998 6999999999999998875
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=201.65 Aligned_cols=250 Identities=14% Similarity=0.106 Sum_probs=183.8
Q ss_pred CCCCccceEEee-ecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCC--
Q psy14257 295 GLSTAEGLAVDW-IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-- 371 (841)
Q Consensus 295 ~l~~p~giavD~-~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~-- 371 (841)
.+..|.+||+|+ ..++|| ++|.+ ++|.++++++..+..+.. .+..|.+|++|..+++|||+|...+
T Consensus 135 ~~~~P~~lavdp~~~g~Ly--v~d~~--------~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~ 203 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLY--LVGEQ--------HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNND 203 (430)
T ss_dssp CCSCCCEEEEETTEEEEEE--EEEBT--------EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTT
T ss_pred CCCCCCEEEECCCCCCeEE--EEeCC--------CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcc
Confidence 478999999997 444444 55542 599999999877666654 7789999999999999999998544
Q ss_pred --eEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEec-CCCCCcee
Q psy14257 372 --TVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA-GDMESPRA 448 (841)
Q Consensus 372 --~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~-~~l~~P~g 448 (841)
.|..++.+|...... .+..+..+ ..+++|..+++|||+|...++|.++++++.....+.. .....|++
T Consensus 204 ~~~v~~~~~~g~~~~~~-~l~~~~~p--------~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 204 RPNNYILTRESGFKVIT-ELTKGQNC--------NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp SEEEEEEEGGGTSCSEE-EEEECSSC--------CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEE
T ss_pred cceEEEEeCCCceeeee-eeccCCCc--------eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCccee
Confidence 566677777654211 11112222 2235666679999999999999999999876644332 33467999
Q ss_pred EEEcCCCCeEEEEecCCCCCeEEEecCCCCC-----cEEEEEe-cc--------cCCCCCCce-eEEEec-------cCC
Q psy14257 449 IALDPRFGLLFWTDWDSKAPRIERCSMSGEH-----RSVIVRV-DL--------LTSRGAWPN-GLTLDY-------QLT 506 (841)
Q Consensus 449 iavd~~~g~Ly~td~~~~~~~I~r~~ldG~~-----~~~i~~~-~~--------~~~~~~~P~-glalD~-------~~~ 506 (841)
||++|...+|||+|.. .++|++++.+|.. ..++... +. ....+..|. |++++. .++
T Consensus 275 ia~~pdG~~lyv~d~~--~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g 352 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVN--QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY 352 (430)
T ss_dssp EEECTTSSEEEEEETT--TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred EEEcCCCCEEEEEECC--CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC
Confidence 9999997789999988 7899999999753 2233331 00 012477899 899963 358
Q ss_pred EEEEEeCCCCeEEEEEcCCCeeEEEEcC--------C------CCCCcceEEEEe--cCeEEEEeCCCCeEEEEec
Q psy14257 507 RIYWIDAKSDSIHTVTYDGKDHHVVLSN--------H------DSLTHPFAIALF--ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 507 ~LYw~d~~~~~I~~~~~dG~~~~~i~~~--------~------~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~ 566 (841)
+|||+|..+++|++++.+|......... . ..|.+|.||++. +++||++|..+++|+++.+
T Consensus 353 ~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 353 DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 9999999999999999988544333321 1 136789999997 4899999999999999875
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-18 Score=181.19 Aligned_cols=261 Identities=10% Similarity=0.184 Sum_probs=191.6
Q ss_pred cceEEEEecC-CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC-----------CCCeEEEecCCCCC
Q psy14257 412 GKNLYWVESN-LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS-----------KAPRIERCSMSGEH 479 (841)
Q Consensus 412 ~~~LY~tD~~-~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~-----------~~~~I~r~~ldG~~ 479 (841)
++.||+.... .++|++++.+|+..+.+... .+..|.+ .+++||+++... ....|+++++||+.
T Consensus 25 g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~---~~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~ 99 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSND---TAMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG 99 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEETTSCSCEEEEEE---EEEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred CCEEEEEeCCCCceEEEEcCCCCCCEEccCC---ceeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence 4899998743 67999999999887666543 3666765 478999998642 14689999999999
Q ss_pred cEEEEEecccCCCCCCceeEEEeccCCEEEEEe---CCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeC
Q psy14257 480 RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWID---AKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 480 ~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d---~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~ 556 (841)
++.+.. . .+.++.+.+++|||++ .....|+++++||+.++.+.... . .| +...+++|||++.
T Consensus 100 ~~~l~~------~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~--~-~~--~~~~g~~iy~t~~ 164 (302)
T 3s25_A 100 STVLDP------D----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY--L-FT--CNTSDRYFYYNNP 164 (302)
T ss_dssp CEEEEC------S----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC--C-CC--SEEETTEEEEECT
T ss_pred ceEeec------C----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC--c-eE--eeEECCEEEEEeC
Confidence 888765 1 2334455689999999 66789999999999998887653 2 23 4778999999998
Q ss_pred CCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCc
Q psy14257 557 RTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636 (841)
Q Consensus 557 ~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~ 636 (841)
....|++++..+ ...+.+
T Consensus 165 g~~~Iy~~~l~g-~~~~~l------------------------------------------------------------- 182 (302)
T 3s25_A 165 KNGQLYRYDTAS-QSEALF------------------------------------------------------------- 182 (302)
T ss_dssp TTCCEEEEETTT-TEEEEE-------------------------------------------------------------
T ss_pred CCceEEEEECCC-CCEEEE-------------------------------------------------------------
Confidence 667777766421 111111
Q ss_pred eeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCC-CeEEEEEcccCceeeeeeeeeeeec
Q psy14257 637 QFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEY-NEVKRSSIVGGQIQLVVDAVFEFYL 715 (841)
Q Consensus 637 ~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~-~~I~~~~~~g~~~~~~~~~~~~~~~ 715 (841)
+ ... ....++|..+.|||++... ..|+|++++|+.
T Consensus 183 ----~-----------~~~----------------~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~------------- 218 (302)
T 3s25_A 183 ----Y-----------DCN----------------CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN------------- 218 (302)
T ss_dssp ----E-----------CSC----------------EEEEEEEETTEEEEEEGGGTTEEEEECSSSCC-------------
T ss_pred ----e-----------CCC----------------ccceeeecCCEEEEEEcCCCcEEEEEECCCCC-------------
Confidence 0 000 0011347789999999653 589999999988
Q ss_pred ccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEE
Q psy14257 716 TPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIA 795 (841)
Q Consensus 716 ~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~ia 795 (841)
.++++...+ ..+|+.+++|||+. +.....|+++++||+.|++|..+ +..+|+
T Consensus 219 -------------~~~Lt~~~~-----~~~~~~g~~Iy~~~-~~~~~~i~~~~~DG~~r~~l~~~---------~~~~i~ 270 (302)
T 3s25_A 219 -------------PVVLTEANI-----EHYNVYGSLIFYQR-GGDNPALCVVKNDGTGFKELAKG---------EFCNIN 270 (302)
T ss_dssp -------------CEECSCSCE-----EEEEEETTEEEEEE-CSSSCEEEEEETTSCCCEEEEES---------CEEEEE
T ss_pred -------------eEEEeCCCc-----ceEEECCCEEEEEE-CCCCcEEEEEECCCCccEEeeCC---------ccceEE
Confidence 444443322 34778899999984 44568999999999999988875 334555
Q ss_pred EeCCCCeEEEEecCCCcceEEEEecCCCceEEEec
Q psy14257 796 VWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830 (841)
Q Consensus 796 vd~~~g~lyw~d~~~~~~~I~~~~~dG~~~~~l~~ 830 (841)
+ ...+|||+|+..+ .|.|+++||+++.+|++
T Consensus 271 i--~~d~Iy~td~~~~--~i~~~~~dGs~~~~l~~ 301 (302)
T 3s25_A 271 V--TSQYVYFTDFVSN--KEYCTSTQNPDTIKALQ 301 (302)
T ss_dssp E--CSSEEEEEETTTC--CEEEEESSSCCSCEECC
T ss_pred E--eCCEEEEEECCCC--eEEEEECCCCCceEecC
Confidence 5 6789999999874 69999999999999875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=195.61 Aligned_cols=261 Identities=17% Similarity=0.200 Sum_probs=182.4
Q ss_pred CcCCCceEEEEc--cCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC--
Q psy14257 347 NIQWPSSLVIDY--NQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-- 422 (841)
Q Consensus 347 ~~~~P~glavD~--~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-- 422 (841)
.|..|.||++|+ ..+.|||+|.. ++|+++++.+...+.+.. .+..+ ..+++|+.++ |||+|...
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~--~~~~P--------~giavd~dG~-lyVad~~~~~ 204 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT--NIGQC--------ADVNFTLNGD-MVVVDDQSSD 204 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC--CCSCE--------EEEEECTTCC-EEEEECCSCT
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec--CCCCc--------cEEEECCCCC-EEEEcCCCCc
Confidence 688999999998 48999999998 999999996665555432 11111 1235566556 99999753
Q ss_pred --CcEEEEccCCceE-EEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCCcee
Q psy14257 423 --DQIEVAKLSGQFR-RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAWPNG 498 (841)
Q Consensus 423 --~~I~v~~~~G~~~-~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~P~g 498 (841)
..+..+..++... ...+. .+..|.+||+|+..|.|||+|+. +++|+|++++ |...+.+... ....+|.+
T Consensus 205 ~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~--~~~V~~~d~~~g~~~~~~~~~----~~~~~~~~ 277 (433)
T 4hw6_A 205 TNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYH--HAMISSYDPATGTLTEEEVMM----DTKGSNFH 277 (433)
T ss_dssp TSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTT--CSEEEEECTTTCCEEEEEEEC----SCCSSCEE
T ss_pred ccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECC--CCEEEEEECCCCeEEEEEecc----CCCCCccc
Confidence 2355555555432 11222 47899999999988999999988 7899999998 5542444442 34457789
Q ss_pred EEEeccCCEEEEEeCCCCeEEEEEcCCCe-----eEEEEcC------------CCCCCcceEEEE---------e-cCeE
Q psy14257 499 LTLDYQLTRIYWIDAKSDSIHTVTYDGKD-----HHVVLSN------------HDSLTHPFAIAL---------F-ENHV 551 (841)
Q Consensus 499 lalD~~~~~LYw~d~~~~~I~~~~~dG~~-----~~~i~~~------------~~~l~~P~gla~---------~-~~~l 551 (841)
|++|+.+++|||+|..+++|+++++++.. ..++... ...+.+|.+|++ . ++.|
T Consensus 278 ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l 357 (433)
T 4hw6_A 278 IVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF 357 (433)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence 99999888899999999999999998531 2334332 124678999999 3 5799
Q ss_pred EEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcc
Q psy14257 552 YWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631 (841)
Q Consensus 552 Y~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC 631 (841)
||+|+.+++|.++++ +|. +..+... +. .+..|+ .|+.
T Consensus 358 yvaD~~n~~I~~~~~-~G~-v~t~~G~---------------------g~---------------~~~~G~---~dG~-- 394 (433)
T 4hw6_A 358 YFCDRDSHTVRVLTP-EGR-VTTYAGR---------------------GN---------------SREWGY---VDGE-- 394 (433)
T ss_dssp EEEETTTTEEEEECT-TSE-EEEEECC---------------------CT---------------TCSSCC---BCEE--
T ss_pred EEEECCCCEEEEECC-CCC-EEEEEeC---------------------CC---------------CCcccc---CCCc--
Confidence 999999999999986 442 2222210 00 011111 0100
Q ss_pred cccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcc
Q psy14257 632 QVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIV 699 (841)
Q Consensus 632 ~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~ 699 (841)
......+..|.+|++|+.++.||++|..+++|+++.++
T Consensus 395 ------------------------------~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 395 ------------------------------LRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ------------------------------TTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ------------------------------cccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 00012457789999999999999999999999999764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-19 Score=198.71 Aligned_cols=254 Identities=13% Similarity=0.053 Sum_probs=183.5
Q ss_pred ccceeeecccc-cCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCC
Q psy14257 248 LKNTIALDFYY-TPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSS 326 (841)
Q Consensus 248 ~~~~~avd~~~-~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~ 326 (841)
+.++.+|.++. ..+. ||++|.. ++|++++++++. ... +...+..|.+||+|+.++ ++|+++++.. ..
T Consensus 136 ~~~P~~lavdp~~~g~--Lyv~d~~-~~I~~id~~~~~---v~~-~~~~~~~P~~ia~d~~G~--~lyvad~~~~---~~ 203 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNH--LYLVGEQ-HPTRLIDFEKEY---VST-VYSGLSKVRTICWTHEAD--SMIITNDQNN---ND 203 (430)
T ss_dssp CSCCCEEEEETTEEEE--EEEEEBT-EEEEEEETTTTE---EEE-EECCCSCEEEEEECTTSS--EEEEEECCSC---TT
T ss_pred CCCCCEEEECCCCCCe--EEEEeCC-CcEEEEECCCCE---EEE-EecCCCCcceEEEeCCCC--EEEEEeCCCC---cc
Confidence 56788888886 3555 9999988 899999887653 233 344778999999998653 5666776431 11
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
...|.....+|..........+..|.+|++|+.+++|||+|...++|+++++++.....+........+ ..+
T Consensus 204 ~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P--------~gi 275 (430)
T 3tc9_A 204 RPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE--------FHI 275 (430)
T ss_dssp SEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC--------EEE
T ss_pred cceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc--------eeE
Confidence 235777777876553222235889999999998999999999999999999998766444332211111 123
Q ss_pred ccccccceEEEEecCCCcEEEEccCCce-----EEEEecC--------------CCCCce-eEEEcC-------CCCeEE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQF-----RRTLIAG--------------DMESPR-AIALDP-------RFGLLF 459 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~-----~~~l~~~--------------~l~~P~-giavd~-------~~g~Ly 459 (841)
+++..++.|||+|...++|.+++++|.. ..++... .+..|. +++++. ..|.||
T Consensus 276 a~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~ly 355 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFY 355 (430)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEE
Confidence 5666667799999999999999998741 2222221 267899 899963 358999
Q ss_pred EEecCCCCCeEEEecCCCCCcEEEEEec------------ccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC
Q psy14257 460 WTDWDSKAPRIERCSMSGEHRSVIVRVD------------LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 460 ~td~~~~~~~I~r~~ldG~~~~~i~~~~------------~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d 524 (841)
++|++ +++|.+++.+|...+ ++..+ .....|.+|.||++|+.+++||++|..+++|++++++
T Consensus 356 vaD~~--n~~I~~i~~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 356 FCDRE--NHCIRILTPQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEGG--GTEEEEECTTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC--CcEEEEECCCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 99998 899999998884333 33210 0112377999999998789999999999999999876
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-18 Score=190.69 Aligned_cols=250 Identities=16% Similarity=0.156 Sum_probs=179.8
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
+..+.+|.|+. +++ |||+|..+++|++++++++. ..++.. ....|. +++++.++ ++||+++.. .
T Consensus 130 ~~~P~~la~d~-~g~--lyv~d~~~~~I~~id~~~g~---~~~~~~-~~~~~~-ia~~~~g~--~l~~~d~~~------~ 193 (409)
T 3hrp_A 130 FKYMWGIAAVG-NNT--VLAYQRDDPRVRLISVDDNK---VTTVHP-GFKGGK-PAVTKDKQ--RVYSIGWEG------T 193 (409)
T ss_dssp CCCEEEEEECS-TTE--EEEEETTTTEEEEEETTTTE---EEEEEE-TCCBCB-CEECTTSS--EEEEEBSST------T
T ss_pred cCCceEEEEeC-CCC--EEEEecCCCcEEEEECCCCE---EEEeec-cCCCCc-eeEecCCC--cEEEEecCC------C
Confidence 55688888874 355 99999999999999987654 334433 356788 99998664 566776532 1
Q ss_pred CCEEEEccCCCcccccc----ccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCC
Q psy14257 328 GGIEKAGMHGENRSPLV----TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC 403 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~----~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~ 403 (841)
.+|.+++.++....... ......|.++++|+.+++||++|. .++|+++++++...+.+......+.. +. ..
T Consensus 194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~---~~-~P 268 (409)
T 3hrp_A 194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSL---GT-NP 268 (409)
T ss_dssp CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCC---CC-SS
T ss_pred ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCC---CC-Cc
Confidence 28999998765542222 226789999999998999999886 78999999998765554332211110 00 00
Q ss_pred C-CCccccccceEEEEecCCCcEEEEccCCceEEEEecCC--------------CCCceeEEEcCCCCeEEEEec-CCCC
Q psy14257 404 R-PEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGD--------------MESPRAIALDPRFGLLFWTDW-DSKA 467 (841)
Q Consensus 404 ~-~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~--------------l~~P~giavd~~~g~Ly~td~-~~~~ 467 (841)
. .++++..+++|||+|..+++|.+++++|..... .... +..|.+|++|+. |.||++|+ + +
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~--~ 344 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWF-CGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFK--G 344 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTT--T
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCC--C
Confidence 1 245666679999999999999999999984433 3322 678999999987 77999998 7 7
Q ss_pred CeEEEecC-CCCCcEEEEEecc---------cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC
Q psy14257 468 PRIERCSM-SGEHRSVIVRVDL---------LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 468 ~~I~r~~l-dG~~~~~i~~~~~---------~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d 524 (841)
++|.++++ +|. ...+..... ....+..|.||++|+. ++||++|..+++|+++.++
T Consensus 345 ~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 345 YCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEEC
T ss_pred CEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEeC
Confidence 89999994 554 334433100 0013788999999975 9999999999999999764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=187.67 Aligned_cols=250 Identities=12% Similarity=0.062 Sum_probs=179.8
Q ss_pred CCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCC-eE
Q psy14257 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TV 373 (841)
Q Consensus 295 ~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~-~I 373 (841)
.+..|.+||+|+.+ + +||+|. .+++|.++++++..+..+... ...|. +++++.++.|||+|...+ +|
T Consensus 129 ~~~~P~~la~d~~g-~--lyv~d~-------~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I 196 (409)
T 3hrp_A 129 KFKYMWGIAAVGNN-T--VLAYQR-------DDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTV 196 (409)
T ss_dssp CCCCEEEEEECSTT-E--EEEEET-------TTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred ccCCceEEEEeCCC-C--EEEEec-------CCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceE
Confidence 47799999999543 4 555654 345999999997766665443 56678 999999999999999665 99
Q ss_pred EEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEE----ecCC-CCCce-
Q psy14257 374 ESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTL----IAGD-MESPR- 447 (841)
Q Consensus 374 ~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l----~~~~-l~~P~- 447 (841)
++++.++......... .... .......++++..++.||+++. .++|.++++++.....+ .... ...|.
T Consensus 197 ~~~d~~~~~~~~~~g~--~~~~---~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQ--LGST---FSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEEGGGTTCEEEEEE--CCTT---SCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred EEEEcCCCceeEEeee--ccch---hcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 9999987665322210 0000 0011123466777799999886 68999999987765554 2211 23477
Q ss_pred eEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec-c--------cCCCCCCceeEEEeccCCEEEEEeC-CCCe
Q psy14257 448 AIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD-L--------LTSRGAWPNGLTLDYQLTRIYWIDA-KSDS 517 (841)
Q Consensus 448 giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~-~--------~~~~~~~P~glalD~~~~~LYw~d~-~~~~ 517 (841)
+|+++|.+|.||++|.. .++|++++++|. ...+.... . ....+..|.||++|+. ++||++|. .+++
T Consensus 271 ~ia~~p~~g~lyv~d~~--~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~ 346 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQN--LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYC 346 (409)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCE
T ss_pred cEEEeCCCCEEEEEeCC--CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCE
Confidence 99999988999999987 789999999997 33333310 0 0012778999999965 67999999 9999
Q ss_pred EEEEEcCCCeeEEEEcCC------------CCCCcceEEEEec-CeEEEEeCCCCeEEEEec
Q psy14257 518 IHTVTYDGKDHHVVLSNH------------DSLTHPFAIALFE-NHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 518 I~~~~~dG~~~~~i~~~~------------~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~ 566 (841)
|+++++....+.++.... ..+..|.+|++.. +.||++|+.+++|+++..
T Consensus 347 I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 347 LRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 999994444455554431 1367899999965 999999999999998864
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.6e-18 Score=189.53 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=185.1
Q ss_pred CCCCCccceEEee-ecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccccc---CcCCCceEEE-------EccCCE
Q psy14257 294 TGLSTAEGLAVDW-IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTK---NIQWPSSLVI-------DYNQDI 362 (841)
Q Consensus 294 ~~l~~p~giavD~-~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~---~~~~P~glav-------D~~~~~ 362 (841)
..+..|.+|++|| ..++||+.+. . .++|.++++.+..+.++... .+..|.+|++ |.++++
T Consensus 136 ~~~~~p~~la~dp~~~~~Lyv~~~--~-------~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 136 CGFSDNGRLAFDPLNKDHLYICYD--G-------HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp BCCCSEEEEEEETTEEEEEEEEEE--T-------EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred cccCCCCEEEEccCCCCEEEEEEC--C-------CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCE
Confidence 4577899999998 4667777543 2 24899999998888877644 4678999999 999999
Q ss_pred EEEEeCCCC------eEEEEEecC--Ccc-----EEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEc
Q psy14257 363 LYWCDSHLN------TVESVRVDG--SER-----TVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAK 429 (841)
Q Consensus 363 lYwaD~~~~------~I~~~~ldG--~~~-----~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~ 429 (841)
||++|...+ .|..++.+. .-. ..+. .+.. +..++++..++.||++|...++|.+++
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~---~~~~--------p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA---AYKQ--------CNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE---EESC--------CCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeec---cCCC--------ceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 999999763 477775443 332 1221 1222 223356677799999999999999999
Q ss_pred cC--------Cce-----------EEEEe-cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc-----EEEE
Q psy14257 430 LS--------GQF-----------RRTLI-AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR-----SVIV 484 (841)
Q Consensus 430 ~~--------G~~-----------~~~l~-~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~-----~~i~ 484 (841)
++ |.. .+.+. ......|++||++|..++||++|+. +++|+|+++||... .+++
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~--~h~I~kid~dg~~~~~~~~~~~a 353 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN--NHYFMRSDYDEIKKEFITPYNFV 353 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEECCCEEEE
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC--CCEEEEEecCCCcceecccEEec
Confidence 97 332 12222 2234679999999998889999988 89999999998653 3444
Q ss_pred Ee-cc--------cCCCCCCce-eEEEec------cCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC-------------
Q psy14257 485 RV-DL--------LTSRGAWPN-GLTLDY------QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH------------- 535 (841)
Q Consensus 485 ~~-~~--------~~~~~~~P~-glalD~------~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~------------- 535 (841)
.. +. ....|..|. |+++|. .++.||++|..+++|++++++|. +.+++...
T Consensus 354 G~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~ 432 (496)
T 3kya_A 354 GGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGT 432 (496)
T ss_dssp EBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCC
T ss_pred CCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCcccccc
Confidence 32 10 013578899 888873 46899999999999999999984 55554321
Q ss_pred --------CCCCcceEEEEec--CeEEEEeCCCCeEEEEeccC
Q psy14257 536 --------DSLTHPFAIALFE--NHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 536 --------~~l~~P~gla~~~--~~lY~td~~~~~i~~~~~~~ 568 (841)
..|.+|.||++.. +.||++|..+++|+++....
T Consensus 433 ~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 433 DDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp CCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 1477899999974 89999999999999998643
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=169.09 Aligned_cols=279 Identities=14% Similarity=0.172 Sum_probs=195.6
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
...+.+|.++.. +. ||+++...+.|.+.+.. +.+ ....+...+..|.+|++|+.+ ++| +++. ..
T Consensus 19 ~~~p~~i~~d~~-g~--l~v~~~~~~~v~~~~~~-~~~--~~~~~~~~~~~~~~i~~~~~g-~l~--v~~~-------~~ 82 (300)
T 2qc5_A 19 DSGPYGITSSED-GK--VWFTQHKANKISSLDQS-GRI--KEFEVPTPDAKVMCLIVSSLG-DIW--FTEN-------GA 82 (300)
T ss_dssp TCCEEEEEECTT-SC--EEEEETTTTEEEEECTT-SCE--EEEECSSTTCCEEEEEECTTS-CEE--EEET-------TT
T ss_pred CCCcceeeECCC-CC--EEEEcCCCCeEEEECCC-Cce--EEEECCCCCCcceeEEECCCC-CEE--EEec-------CC
Confidence 455667766654 55 99999888999999876 432 122223345789999999532 444 4443 24
Q ss_pred CCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 328 GGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
++|.+++.+|+............|.+|++|+ .++||+++...+.|.+++.+|........ .. ...+.+ ++
T Consensus 83 ~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-~~--~~~~~~------i~ 152 (300)
T 2qc5_A 83 NKIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLP-NK--GSYPAF------IT 152 (300)
T ss_dssp TEEEEECTTSCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECS-ST--TCCEEE------EE
T ss_pred CeEEEECCCCCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCCCCEEEccCC-CC--CCCcee------EE
Confidence 5899999886643222223457899999996 57899999988999999998544322111 00 000111 12
Q ss_pred cccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD 487 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~ 487 (841)
+|. .++||+++...+.|.+++.+|+.........+..|.+|++|+. |.||+++.. .+.|.+++.+|........
T Consensus 153 ~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~--~~~i~~~~~~g~~~~~~~~-- 226 (300)
T 2qc5_A 153 LGS-DNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGND-GALWFVEIM--GNKIGRITTTGEISEYDIP-- 226 (300)
T ss_dssp ECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETT--TTEEEEECTTCCEEEEECS--
T ss_pred ECC-CCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCC-CCEEEEccC--CCEEEEEcCCCcEEEEECC--
Confidence 232 2679999988899999999888766444455678999999984 799999977 6789999997654432221
Q ss_pred ccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEec
Q psy14257 488 LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 488 ~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~ 566 (841)
.....|.+|++|+. ++||+++...+.|.+++++|........ .....|.+|++. ++.||+++. + .|.++++
T Consensus 227 ---~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 227 ---TPNARPHAITAGKN-SEIWFTEWGANQIGRITNDNTIQEYQLQ--TENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ---STTCCEEEEEECST-TCEEEEETTTTEEEEECTTSCEEEEECC--STTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ---CCCCCceEEEECCC-CCEEEeccCCCeEEEECCCCcEEEEECC--ccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 35678999999964 7899999888999999998765433222 225679999996 589999998 6 8888875
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=187.36 Aligned_cols=260 Identities=12% Similarity=0.054 Sum_probs=182.3
Q ss_pred ccceeeecccc-cCCcceeEEEecCCCeEEEEEecCCcccceEEEEeC---CCCCccceEE-------eeecCceeEEEe
Q psy14257 248 LKNTIALDFYY-TPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT---GLSTAEGLAV-------DWIGKNLYMFWA 316 (841)
Q Consensus 248 ~~~~~avd~~~-~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~---~l~~p~giav-------D~~~~~~y~~~t 316 (841)
+..+.+|.++. ..++ ||+++...++|.++++.++. ..+++.. ++..|.+||+ |..++ +||.+
T Consensus 138 ~~~p~~la~dp~~~~~--Lyv~~~~~~~i~~ID~~~~~---v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyva 210 (496)
T 3kya_A 138 FSDNGRLAFDPLNKDH--LYICYDGHKAIQLIDLKNRM---LSSPLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVA 210 (496)
T ss_dssp CCSEEEEEEETTEEEE--EEEEEETEEEEEEEETTTTE---EEEEECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEE
T ss_pred cCCCCEEEEccCCCCE--EEEEECCCCeEEEEECCCCE---EEEEEccCccccCCCcEEEEeecccccCCCCC--EEEEE
Confidence 45677888886 3455 99999888899999988764 3344433 3457999999 87664 56677
Q ss_pred eecCCCCCCCCCCEEEEc--cCCCccc----cccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec-------CCcc
Q psy14257 317 FWSLSPSNSSDGGIEKAG--MHGENRS----PLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD-------GSER 383 (841)
Q Consensus 317 d~~~~~~~~~~~~I~~~~--~dG~~~~----~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld-------G~~~ 383 (841)
++.... ......|..+. .+|.... ..+. .+.+|.||++|+.+++||++|...++|++++++ +...
T Consensus 211 d~~~~~-~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 211 IDYDGK-GDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp ECCCTT-GGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred eCCCCC-cccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 765310 01123477774 3445431 1222 578999999999999999999999999999998 3332
Q ss_pred ------------EEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceE-----EEEec------
Q psy14257 384 ------------TVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFR-----RTLIA------ 440 (841)
Q Consensus 384 ------------~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~-----~~l~~------ 440 (841)
+.++.... ...+. .++++..++.||++|..+++|+++++++... .++..
T Consensus 289 ~tp~~~~~~g~~~~l~~~~~--~~~p~------~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G 360 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTIAD--PSWEF------QIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSG 360 (496)
T ss_dssp CCCBGGGCTTTEEEEEECSS--SSCCE------EEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCC
T ss_pred ecccccccccccceeEecCC--CCCce------EEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCc
Confidence 23322111 01111 1356666677999999999999999887531 23332
Q ss_pred --------CCCCCce-eEEEcC------CCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc-----------------
Q psy14257 441 --------GDMESPR-AIALDP------RFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL----------------- 488 (841)
Q Consensus 441 --------~~l~~P~-giavd~------~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~----------------- 488 (841)
..|.+|. +++++. ..|.||++|++ +++|.+++.+|. ..+++..+.
T Consensus 361 ~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~--N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~ 437 (496)
T 3kya_A 361 YRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL--NFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDL 437 (496)
T ss_dssp CBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG--GTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEET
T ss_pred ccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC--CCEEEEEeCCCC-EEEEecccccccccCccccccCCCCc
Confidence 1367899 888873 46899999998 899999999984 344443211
Q ss_pred -cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe
Q psy14257 489 -LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD 527 (841)
Q Consensus 489 -~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~ 527 (841)
....|..|.||++|..++.||++|..+++|+++++++..
T Consensus 438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 112578999999997679999999999999999998864
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=174.18 Aligned_cols=262 Identities=18% Similarity=0.105 Sum_probs=179.3
Q ss_pred CCCCccceEEeeecCceeEEEeeecCCCC-----------------CCCCCCEEEEccC-CCccccccccCcCCCceEEE
Q psy14257 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPS-----------------NSSDGGIEKAGMH-GENRSPLVTKNIQWPSSLVI 356 (841)
Q Consensus 295 ~l~~p~giavD~~~~~~y~~~td~~~~~~-----------------~~~~~~I~~~~~d-G~~~~~l~~~~~~~P~glav 356 (841)
.+..|.|||+|+.+ ++| +++.+.... -...++|.+++.+ |+..+.+....+..|.||++
T Consensus 22 ~l~~v~~va~d~~G-~l~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 22 LPGQVSGVALDSKN-NLV--IFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CCSCEEEEEECTTC-CEE--EEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred ecCCceEEEECCCC-CEE--EEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence 46678999999653 555 454433100 0123579999986 76655555567889999999
Q ss_pred EccCCEEEEEeCCCCeEEEEEecCCc--cEEEEeeeeecCCCccccCCCCCCccccccceEEEEec-CCCcEEEEccCCc
Q psy14257 357 DYNQDILYWCDSHLNTVESVRVDGSE--RTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES-NLDQIEVAKLSGQ 433 (841)
Q Consensus 357 D~~~~~lYwaD~~~~~I~~~~ldG~~--~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~-~~~~I~v~~~~G~ 433 (841)
|++++ ||++|...++|++++++|.. ...+......+.. ...+.....+++|..+++||++|. ..++|.+++.+|.
T Consensus 99 d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~-~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~ 176 (329)
T 3fvz_A 99 DTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSD-QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK 176 (329)
T ss_dssp CTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCS-TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC
T ss_pred CCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCC-ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC
Confidence 97655 99999999999999999873 3333211100000 000001112355655799999997 7999999999999
Q ss_pred eEEEEec---------CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 434 FRRTLIA---------GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 434 ~~~~l~~---------~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
...++.. ..+..|.+||+||..|.||++|++ +.+|.+++++ |+....+... .....|.++++.+
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~~~~~~~~----~~~~~~~~~~~~p 250 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEFVREIKHA----SFGRNVFAISYIP 250 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCEEEEECCT----TTTTCEEEEEEET
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcEEEEEecc----ccCCCcceeeecC
Confidence 8877653 235679999999988999999988 7899999998 7655544321 1223344444443
Q ss_pred -----cCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEecc
Q psy14257 504 -----QLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 504 -----~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~ 567 (841)
.++++|+++....+|..+++. |....++......+..|.+|++. ++.||++|..+++|.+++..
T Consensus 251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 235566666777799999965 55555443333457889999995 47999999999999988764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-16 Score=163.54 Aligned_cols=268 Identities=15% Similarity=0.197 Sum_probs=185.0
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
++||+++...+.|.+++.+|+.....+...+..|.+|++|+. |.||+++.. .++|.+.+.+|... .+.. ...
T Consensus 31 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~--~~~v~~~d~~g~~~-~~~~----~~~ 102 (300)
T 2qc5_A 31 GKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSL-GDIWFTENG--ANKIGKLSKKGGFT-EYPL----PQP 102 (300)
T ss_dssp SCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTT-SCEEEEETT--TTEEEEECTTSCEE-EEEC----SST
T ss_pred CCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCC-CCEEEEecC--CCeEEEECCCCCeE-EecC----CCC
Confidence 455555555556666666644444333344578999999964 789999976 67999999985542 2221 124
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
...|.+|++|+ +++||+++...+.|.+++++|........ .....|.+|++. ++.||+++...+.|.+++. +|+.
T Consensus 103 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 178 (300)
T 2qc5_A 103 DSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLP--NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL 178 (300)
T ss_dssp TCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECS--STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCCCccceECC-CCCEEEEccCCCeEEEECCCCCEEEccCC--CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE
Confidence 57899999995 68999999888899999999665533322 235689999995 4789999987777777764 2221
Q ss_pred eEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEe
Q psy14257 572 VTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVD 651 (841)
Q Consensus 572 ~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~ 651 (841)
.. + .
T Consensus 179 ~~-~---------------------------------------------------------------------------~ 182 (300)
T 2qc5_A 179 EE-Y---------------------------------------------------------------------------P 182 (300)
T ss_dssp EE-E---------------------------------------------------------------------------E
T ss_pred EE-e---------------------------------------------------------------------------e
Confidence 10 0 0
Q ss_pred cCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEE
Q psy14257 652 LEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQL 731 (841)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (841)
+. .....|.+|++|+ ++.||+++...+.|.+++.+|.. ...
T Consensus 183 ~~------------~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~--------------------------~~~ 223 (300)
T 2qc5_A 183 LP------------TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEI--------------------------SEY 223 (300)
T ss_dssp CS------------STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCE--------------------------EEE
T ss_pred CC------------CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcE--------------------------EEE
Confidence 00 0113456788886 56899999888899999886543 222
Q ss_pred EeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCC
Q psy14257 732 VVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 811 (841)
Q Consensus 732 i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~ 811 (841)
.+......|.+|++|..+ +||++ +...++|.+++++|......+.. ....|.+|++|+. |.||+++. .
T Consensus 224 ~~~~~~~~~~~i~~d~~g-~l~v~--~~~~~~i~~~~~~g~~~~~~~~~------~~~~~~~i~~~~~-g~l~v~~~-~- 291 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNS-EIWFT--EWGANQIGRITNDNTIQEYQLQT------ENAEPHGITFGKD-GSVWFALK-C- 291 (300)
T ss_dssp ECSSTTCCEEEEEECSTT-CEEEE--ETTTTEEEEECTTSCEEEEECCS------TTCCCCCEEECTT-SCEEEECS-S-
T ss_pred ECCCCCCCceEEEECCCC-CEEEe--ccCCCeEEEECCCCcEEEEECCc------cCCccceeEeCCC-CCEEEEcc-C-
Confidence 233456789999999875 69999 45678999999987665443331 1578999999986 88999987 3
Q ss_pred cceEEEEecC
Q psy14257 812 VVTIEMAFMD 821 (841)
Q Consensus 812 ~~~I~~~~~d 821 (841)
+|.+.+.+
T Consensus 292 --~i~~~~p~ 299 (300)
T 2qc5_A 292 --KIGKLNLN 299 (300)
T ss_dssp --EEEEEEEC
T ss_pred --ceEEeCCC
Confidence 37776653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=171.93 Aligned_cols=238 Identities=17% Similarity=0.285 Sum_probs=167.1
Q ss_pred ceeeecccccCCcceeEE-EecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFW-TDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw-~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
.+.++.++.. ++ ||+ ++...+.|.+.+..++. ...+...++..|.+|++|+.+ ++| +++. .+
T Consensus 25 ~p~~i~~~~~-g~--l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g-~l~--v~~~--------~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSA-GN--VYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAG-TVY--VTDF--------NN 87 (270)
T ss_dssp CEEEEEECTT-CC--EEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTC-CEE--EEET--------TT
T ss_pred CccceEECCC-CC--EEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCC-CEE--EEcC--------CC
Confidence 6777777654 45 999 98889999998764432 222223455789999999743 444 4442 35
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcc
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~av 408 (841)
+|.+++.+|.....+....+..|.+|++|+. ++||+++...
T Consensus 88 ~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~-------------------------------------- 128 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ-GAVYVADRGN-------------------------------------- 128 (270)
T ss_dssp EEEEECTTCSCCEECCCCSCSSEEEEEECTT-CCEEEEEGGG--------------------------------------
T ss_pred EEEEEeCCCceEeeeecCCcCCCcceEECCC-CCEEEEECCC--------------------------------------
Confidence 8999999988766555556778999999874 3455555443
Q ss_pred ccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 409 LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 409 dw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
+.|.+++.............+..|.+|++++. |.||+++.. ..+|.++++++........
T Consensus 129 --------------~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~--~~~i~~~~~~~~~~~~~~~--- 188 (270)
T 1rwi_B 129 --------------NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTD--NNRVVKLEAESNNQVVLPF--- 188 (270)
T ss_dssp --------------TEEEEECTTCCSCEECCCCSCCSCCCEEECTT-CCEEEEEGG--GTEEEEECTTTCCEEECCC---
T ss_pred --------------CEEEEEECCCceeEeeccccCCCceeEEEeCC-CCEEEEECC--CCEEEEEecCCCceEeecc---
Confidence 34444432222111112234578999999985 679999987 6899999998876544322
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEecc
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~ 567 (841)
..+..|.+|++|+. ++||+++...++|.++++++.....+.. ..+..|.+|++. ++.||+++..+++|..+++.
T Consensus 189 --~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 189 --TDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp --SSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEECCC--CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred --cCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCcceeecc--CCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 45678999999964 6999999989999999999876654322 225689999996 57899999999999888764
Q ss_pred C
Q psy14257 568 N 568 (841)
Q Consensus 568 ~ 568 (841)
.
T Consensus 264 ~ 264 (270)
T 1rwi_B 264 E 264 (270)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=172.18 Aligned_cols=249 Identities=10% Similarity=0.037 Sum_probs=175.4
Q ss_pred EeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc-------------------cCcCCCc
Q psy14257 292 VQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT-------------------KNIQWPS 352 (841)
Q Consensus 292 ~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~-------------------~~~~~P~ 352 (841)
+...+..|+++++|+.+ ++| |++ ...++|.+++.++...+.+.. .....|.
T Consensus 14 ~~g~~~~p~~i~~d~~g-~~l--~v~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ 83 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTN-KGF--YTS-------VQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY 83 (322)
T ss_dssp EECSSSCCCCEECCTTC-SSE--EEE-------CTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE
T ss_pred cCCccCCceEEEEcCCC-CEE--EEE-------cCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc
Confidence 34457899999999653 433 333 235699999988765443321 1245799
Q ss_pred eEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC-----------
Q psy14257 353 SLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN----------- 421 (841)
Q Consensus 353 glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~----------- 421 (841)
||++|..+++||++|... .|.++++++...+.+..... ......+ ..+++|...++||++|..
T Consensus 84 gi~~~~~~g~l~v~d~~~-~i~~~d~~~g~~~~~~~~~~---~~~~~~p--~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCYY-HLSVVGSEGGHATQLATSVD---GVPFKWL--YAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp EEEEETTTTEEEEEETTT-EEEEECTTCEECEEEESEET---TEECSCE--EEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred eEEEcCCCCcEEEEECCC-CEEEEeCCCCEEEEecccCC---CCccccc--ceEEEecCCCEEEEECCccccccccccee
Confidence 999998779999999874 58899888665555432210 0000000 112444434799999965
Q ss_pred ------CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC---CcEEEEEecccCCC
Q psy14257 422 ------LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE---HRSVIVRVDLLTSR 492 (841)
Q Consensus 422 ------~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~---~~~~i~~~~~~~~~ 492 (841)
.++|.+++.++...+++. ..+..|+||++++..++||+++.. ..+|+++++++. ..+.+.. ..
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~-----~~ 229 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVK-----IP 229 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEE-----CS
T ss_pred hcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEe-----CC
Confidence 267888888765554443 356889999999987889999987 789999999873 3344433 11
Q ss_pred CCCceeEEEeccCCEEEEEeCC----------CCeEEEEEcCCCeeEEEEcCCCC-CCcceEEEEecCeEEEEeCCCCeE
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAK----------SDSIHTVTYDGKDHHVVLSNHDS-LTHPFAIALFENHVYWTDWRTNSV 561 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~----------~~~I~~~~~dG~~~~~i~~~~~~-l~~P~gla~~~~~lY~td~~~~~i 561 (841)
. |.||++|. +++||+++.. .++|.+++++|.....+....+. +..|.+++..+++||+++..++.|
T Consensus 230 -g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 230 -N-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSV 306 (322)
T ss_dssp -S-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEE
T ss_pred -C-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCce
Confidence 2 99999996 5789999875 57899999999877776544322 567888888889999999999999
Q ss_pred EEEecc
Q psy14257 562 IRANKW 567 (841)
Q Consensus 562 ~~~~~~ 567 (841)
.+++..
T Consensus 307 ~~~~~~ 312 (322)
T 2fp8_A 307 GILVYD 312 (322)
T ss_dssp EEEEC-
T ss_pred EEEecc
Confidence 998753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-15 Score=157.03 Aligned_cols=270 Identities=13% Similarity=0.187 Sum_probs=182.2
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
++||+++...+.|.+++++|.............|.+|++|+. |.||+++.. .+.|.+.+.+|... .+.. +..
T Consensus 26 g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~--~~~i~~~~~~g~~~-~~~~----~~~ 97 (299)
T 2z2n_A 26 GKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSD-GEVWFTENA--ANKIGRITKKGIIK-EYTL----PNP 97 (299)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SCEEEEETT--TTEEEEECTTSCEE-EEEC----SST
T ss_pred CCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCC-CCEEEeCCC--CCeEEEECCCCcEE-EEeC----CCc
Confidence 455555554556666666644433333334578999999975 889999876 67899999986532 2221 124
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
...|.+|++|+ +++||+++...+.|.+++++|........ .....|.+|++. +++||+++...+.|.+++. +|+.
T Consensus 98 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 173 (299)
T 2z2n_A 98 DSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELP--NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI 173 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECS--STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred CCCceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecCC--CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE
Confidence 56899999995 67999999888999999997765543332 225679999996 5799999887777777664 3221
Q ss_pred eEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEe
Q psy14257 572 VTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVD 651 (841)
Q Consensus 572 ~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~ 651 (841)
.. +.
T Consensus 174 ~~----------------------------------------------------------------------------~~ 177 (299)
T 2z2n_A 174 TE----------------------------------------------------------------------------FK 177 (299)
T ss_dssp EE----------------------------------------------------------------------------EE
T ss_pred EE----------------------------------------------------------------------------ee
Confidence 10 00
Q ss_pred cCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEE
Q psy14257 652 LEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQL 731 (841)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (841)
+. .....|.+|++|+. +.||+++...+.|.+++.+|.. ...
T Consensus 178 ~~------------~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~--------------------------~~~ 218 (299)
T 2z2n_A 178 IP------------TPASGPVGITKGND-DALWFVEIIGNKIGRITTSGEI--------------------------TEF 218 (299)
T ss_dssp CS------------STTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCE--------------------------EEE
T ss_pred CC------------CCCCcceeEEECCC-CCEEEEccCCceEEEECCCCcE--------------------------EEE
Confidence 00 01123567788865 5689999888899999884432 111
Q ss_pred EeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCC
Q psy14257 732 VVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 811 (841)
Q Consensus 732 i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~ 811 (841)
.+......|.+|++|..+ +||++ +...+.|.+++++|..+...+.. ....|.+|++ ..|.||+++...
T Consensus 219 ~~~~~~~~~~~i~~~~~g-~l~v~--~~~~~~i~~~d~~g~~~~~~~~~------~~~~~~~i~~--~~g~l~v~~~~~- 286 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGI-DLWFT--EWGANKIGRLTSNNIIEEYPIQI------KSAEPHGICF--DGETIWFAMECD- 286 (299)
T ss_dssp ECSSTTCCEEEEEECSTT-CEEEE--ETTTTEEEEEETTTEEEEEECSS------SSCCEEEEEE--CSSCEEEEETTT-
T ss_pred ECCCCCCCceeEEECCCC-CEEEe--ccCCceEEEECCCCceEEEeCCC------CCCccceEEe--cCCCEEEEecCC-
Confidence 122356789999999875 69999 44678999999987654433332 1578999999 568999998643
Q ss_pred cceEEEEecCCC
Q psy14257 812 VVTIEMAFMDGT 823 (841)
Q Consensus 812 ~~~I~~~~~dG~ 823 (841)
.|.+.+.+..
T Consensus 287 --~l~~~~~~~~ 296 (299)
T 2z2n_A 287 --KIGKLTLIKD 296 (299)
T ss_dssp --EEEEEEEC--
T ss_pred --cEEEEEcCcc
Confidence 5888876543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-15 Score=161.96 Aligned_cols=281 Identities=13% Similarity=0.127 Sum_probs=192.5
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEE-eCCCCCccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVV-QTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~-~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
..+.++.++.. +. ||+++...+.|.+.++. +. ..... ......|.+|++|+.+ ++| +++. ..
T Consensus 15 ~~~~~i~~d~~-g~--l~v~~~~~~~v~~~d~~-~~---~~~~~~~~~~~~~~~i~~~~~g-~l~--v~~~-------~~ 77 (299)
T 2z2n_A 15 TGPYGITVSDK-GK--VWITQHKANMISCINLD-GK---ITEYPLPTPDAKVMCLTISSDG-EVW--FTEN-------AA 77 (299)
T ss_dssp CCEEEEEECTT-SC--EEEEETTTTEEEEECTT-CC---EEEEECSSTTCCEEEEEECTTS-CEE--EEET-------TT
T ss_pred CCccceEECCC-CC--EEEEecCCCcEEEEcCC-CC---eEEecCCcccCceeeEEECCCC-CEE--EeCC-------CC
Confidence 45666666654 55 99998888899999876 43 22222 2345689999999643 444 4432 24
Q ss_pred CCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 328 GGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
++|.+++.+|+............|.+|++|+ .++||+++...+.|.+++++|........ .. .....+ ++
T Consensus 78 ~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~-~~--~~~~~~------i~ 147 (299)
T 2z2n_A 78 NKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELP-NK--GSYPSF------IT 147 (299)
T ss_dssp TEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECS-ST--TCCEEE------EE
T ss_pred CeEEEECCCCcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecCC-CC--CCCCce------EE
Confidence 5899999886532222223566899999996 46899999989999999986654332211 00 000111 12
Q ss_pred cccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD 487 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~ 487 (841)
+|. .++||+++...+.|.+++++|+............|.+|++|+. |.||+++.. .+.|.+++.+|.... + ..
T Consensus 148 ~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~--~~~i~~~~~~g~~~~-~-~~- 220 (299)
T 2z2n_A 148 LGS-DNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEII--GNKIGRITTSGEITE-F-KI- 220 (299)
T ss_dssp ECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETT--TTEEEEECTTCCEEE-E-EC-
T ss_pred EcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCC-CCEEEEccC--CceEEEECCCCcEEE-E-EC-
Confidence 221 3789999988889999999777665444455678999999986 789999976 679999999665322 2 21
Q ss_pred ccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEecc
Q psy14257 488 LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 488 ~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~ 567 (841)
......|.+|++|+ +++||+++...+.|.+++++|........ .....|.++++.++.||+++. .+.|.+++..
T Consensus 221 --~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~--~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 221 --PTPNARPHAITAGA-GIDLWFTEWGANKIGRLTSNNIIEEYPIQ--IKSAEPHGICFDGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp --SSTTCCEEEEEECS-TTCEEEEETTTTEEEEEETTTEEEEEECS--SSSCCEEEEEECSSCEEEEET-TTEEEEEEEC
T ss_pred --CCCCCCceeEEECC-CCCEEEeccCCceEEEECCCCceEEEeCC--CCCCccceEEecCCCEEEEec-CCcEEEEEcC
Confidence 13567899999996 47899999888999999997743322222 225679999996689999987 6788888765
Q ss_pred CC
Q psy14257 568 NG 569 (841)
Q Consensus 568 ~g 569 (841)
++
T Consensus 295 ~~ 296 (299)
T 2z2n_A 295 KD 296 (299)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-16 Score=169.49 Aligned_cols=257 Identities=14% Similarity=0.078 Sum_probs=174.9
Q ss_pred cceeeecccccCCcceeEEEecCC------------------------CeEEEEEecCCcccceEEEEeCCCCCccceEE
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVID------------------------DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAV 304 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~------------------------~~I~~~~~~~~~~~~~~~~~~~~l~~p~giav 304 (841)
..+.+|.++.. ++ ||+++... ++|++.+.++|.+ ....-...+..|.|||+
T Consensus 24 ~~v~~va~d~~-G~--l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 24 GQVSGVALDSK-NN--LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--LQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp SCEEEEEECTT-CC--EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE--EEEECTTTCSSEEEEEE
T ss_pred CCceEEEECCC-CC--EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE--EeccCCCccCCceEEEE
Confidence 44566666654 55 88888776 3677877665542 11111234678999999
Q ss_pred eeecCceeEEEeeecCCCCCCCCCCEEEEccCCC--cccccc--------ccCcCCCceEEEEccCCEEEEEeC-CCCeE
Q psy14257 305 DWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE--NRSPLV--------TKNIQWPSSLVIDYNQDILYWCDS-HLNTV 373 (841)
Q Consensus 305 D~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~--~~~~l~--------~~~~~~P~glavD~~~~~lYwaD~-~~~~I 373 (841)
|+.+ ++| +++. .+++|.+++++|. ....+. ...+..|.+|++|+.++.||++|. ..++|
T Consensus 99 d~~g-~l~--v~d~-------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 99 DTDG-NYW--VTDV-------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp CTTS-CEE--EEET-------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred CCCC-CEE--EEEC-------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 9654 444 4543 3469999999998 344443 345778999999998899999997 79999
Q ss_pred EEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccC-CceEEEEecCC-CCCceeEEE
Q psy14257 374 ESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS-GQFRRTLIAGD-MESPRAIAL 451 (841)
Q Consensus 374 ~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~-l~~P~giav 451 (841)
++++.+|.....+.....-..+....+.....+++|..+++||++|..+++|.+++++ |+...++.... -..|.++++
T Consensus 169 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 169 VQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp EEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred EEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence 9999998766554322110000000011112245666679999999999999999998 88887765332 357888888
Q ss_pred cCCCCeEEEEecC-----CCCCeEEEecCC-CCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 452 DPRFGLLFWTDWD-----SKAPRIERCSMS-GEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 452 d~~~g~Ly~td~~-----~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
.| |.+|.++.. ....+|...++. |.....+.. ....+..|.+|++|+. +.||++|..+++|.+++++|
T Consensus 249 ~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~---~~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 249 IP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP---VRKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC---SSSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEEE
T ss_pred cC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC---CCCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCCc
Confidence 87 677766532 114578888864 433332211 1246788999999975 59999999999999999887
Q ss_pred C
Q psy14257 526 K 526 (841)
Q Consensus 526 ~ 526 (841)
.
T Consensus 323 ~ 323 (329)
T 3fvz_A 323 K 323 (329)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-15 Score=158.90 Aligned_cols=240 Identities=14% Similarity=0.140 Sum_probs=169.1
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEe------CCCCCccceEEeeecCceeEEEeeecCC
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQ------TGLSTAEGLAVDWIGKNLYMFWAFWSLS 321 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~------~~l~~p~giavD~~~~~~y~~~td~~~~ 321 (841)
+..+.+|.++.. +. ||++|...++|.+.+.++.. ...+. ..+..|.+++++... ..+|+++.+
T Consensus 29 ~~~p~~v~~~~~-g~--l~v~~~~~~~i~~~d~~g~~----~~~~~~~~~~~~~~~~p~~i~~~~~~--g~l~v~~~~-- 97 (286)
T 1q7f_A 29 FTEPSGVAVNAQ-ND--IIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNS--GDIIVTERS-- 97 (286)
T ss_dssp BSCEEEEEECTT-CC--EEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTT--TEEEEEECG--
T ss_pred cCCCceEEECCC-CC--EEEEECCCCEEEEECCCCcE----EEEecccCCCcccccCceEEEEEcCC--CeEEEEcCC--
Confidence 345667777654 45 99999999999999876432 22221 124579999995433 344455532
Q ss_pred CCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccC
Q psy14257 322 PSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIP 401 (841)
Q Consensus 322 ~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~ 401 (841)
.+++|.+++.+|+....+....+..|.+|++|++
T Consensus 98 ----~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------------ 131 (286)
T 1q7f_A 98 ----PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK------------------------------------------ 131 (286)
T ss_dssp ----GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTT------------------------------------------
T ss_pred ----CCCEEEEECCCCcEEEEecCccCCCceEEEEeCC------------------------------------------
Confidence 1358999999888776665556778999999875
Q ss_pred CCCCCccccccceEEEEecCCCcEEEEccCCceEEEEec-CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc
Q psy14257 402 NCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA-GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR 480 (841)
Q Consensus 402 ~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~ 480 (841)
++||+++...++|.+++.+|+....+.. ..+..|++|++|+. |.||+++.. ..+|.+.+.+|...
T Consensus 132 -----------g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~--~~~i~~~~~~g~~~ 197 (286)
T 1q7f_A 132 -----------GRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNR--AHCVKVFNYEGQYL 197 (286)
T ss_dssp -----------SCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS-SEEEEEEGG--GTEEEEEETTCCEE
T ss_pred -----------CCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCC-CCEEEEECC--CCEEEEEcCCCCEE
Confidence 4455555445556666666655444432 34678999999985 889999987 68999999988654
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC-eEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCC
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD-SIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRT 558 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~-~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~ 558 (841)
..+.. ...+..|.+|++|+ +++||+++...+ +|.+++.+|.....+.... ....|.+|++. +++||+++. .
T Consensus 198 ~~~~~----~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs~~-~ 270 (286)
T 1q7f_A 198 RQIGG----EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKV-KHAQCFDVALMDDGSVVLASK-D 270 (286)
T ss_dssp EEESC----TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESS-CCSCEEEEEEETTTEEEEEET-T
T ss_pred EEEcc----CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccC-CCCcceeEEECCCCcEEEECC-C
Confidence 44322 12357899999996 579999998886 9999999998877776542 24468999996 589999975 5
Q ss_pred CeEEEEe
Q psy14257 559 NSVIRAN 565 (841)
Q Consensus 559 ~~i~~~~ 565 (841)
++|..++
T Consensus 271 ~~v~v~~ 277 (286)
T 1q7f_A 271 YRLYIYR 277 (286)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 6776554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-15 Score=155.72 Aligned_cols=241 Identities=17% Similarity=0.235 Sum_probs=172.7
Q ss_pred CceeEEEcCCCCeEEE-EecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 445 SPRAIALDPRFGLLFW-TDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~-td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
.|.+|++|+. |.||+ ++.. .++|.+.+.++.....+.. ..+..|.+|++|+ +++||+++. .+.|.++++
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~--~~~i~~~~~~~~~~~~~~~-----~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGM--YGRVVKLATGSTGTTVLPF-----NGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSS--SCEEEEECC-----EECCC-----CSCCSCCCEEECT-TCCEEEEET-TTEEEEECT
T ss_pred CccceEECCC-CCEEEEccCC--CCcEEEecCCCcccceEee-----CCcCCcceeEECC-CCCEEEEcC-CCEEEEEeC
Confidence 9999999986 67999 8766 6899999876654433322 4567899999996 567999998 789999999
Q ss_pred CCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCC
Q psy14257 524 DGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNC 602 (841)
Q Consensus 524 dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~C 602 (841)
+|.....+... .+..|.+|++. +++||+++...+.|.+++..+.. .
T Consensus 95 ~~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--~----------------------------- 141 (270)
T 1rwi_B 95 GSNNQTVLPFD--GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--Q----------------------------- 141 (270)
T ss_dssp TCSCCEECCCC--SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS--C-----------------------------
T ss_pred CCceEeeeecC--CcCCCcceEECCCCCEEEEECCCCEEEEEECCCce--e-----------------------------
Confidence 99766544322 25689999996 67899999877777665321000 0
Q ss_pred ccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCE
Q psy14257 603 SHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682 (841)
Q Consensus 603 s~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~ 682 (841)
... ....+..|.+|++|+.. .
T Consensus 142 ------------------------------------~~~----------------------~~~~~~~p~~i~~~~~g-~ 162 (270)
T 1rwi_B 142 ------------------------------------TVL----------------------PFTGLNDPDGVAVDNSG-N 162 (270)
T ss_dssp ------------------------------------EEC----------------------CCCSCCSCCCEEECTTC-C
T ss_pred ------------------------------------Eee----------------------ccccCCCceeEEEeCCC-C
Confidence 000 00012345678888754 5
Q ss_pred EEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCC
Q psy14257 683 IYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQS 762 (841)
Q Consensus 683 iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~ 762 (841)
||+++...+.|++++.++.. ........+..|.+|++|..+ +||++ +...+
T Consensus 163 l~v~~~~~~~i~~~~~~~~~--------------------------~~~~~~~~~~~p~~i~~d~~g-~l~v~--~~~~~ 213 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNN--------------------------QVVLPFTDITAPWGIAVDEAG-TVYVT--EHNTN 213 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCC--------------------------EEECCCSSCCSEEEEEECTTC-CEEEE--ETTTS
T ss_pred EEEEECCCCEEEEEecCCCc--------------------------eEeecccCCCCceEEEECCCC-CEEEE--ECCCC
Confidence 99999888999999988765 222223455789999999876 89999 45678
Q ss_pred eEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCce
Q psy14257 763 KIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR 825 (841)
Q Consensus 763 ~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~ 825 (841)
+|.++++++.....+... .+..|.+|++++. |.||+++.+.+ +|....++-..+
T Consensus 214 ~v~~~~~~~~~~~~~~~~------~~~~p~~i~~~~~-g~l~v~~~~~~--~v~~~~~~~~~~ 267 (270)
T 1rwi_B 214 QVVKLLAGSTTSTVLPFT------GLNTPLAVAVDSD-RTVYVADRGND--RVVKLTSLEHHH 267 (270)
T ss_dssp CEEEECTTCSCCEECCCC------SCSCEEEEEECTT-CCEEEEEGGGT--EEEEECCCGGGS
T ss_pred cEEEEcCCCCcceeeccC------CCCCceeEEECCC-CCEEEEECCCC--EEEEEcCCCccc
Confidence 999999998765543322 1678999999986 68999999874 899988876654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-13 Score=144.73 Aligned_cols=249 Identities=14% Similarity=0.182 Sum_probs=176.3
Q ss_pred CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC-CCeEE
Q psy14257 441 GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK-SDSIH 519 (841)
Q Consensus 441 ~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~-~~~I~ 519 (841)
..+..|.+|++++. |.||+++.. .++|.+.+.+|.....+...+.....+..|.+|+++..+++||+++.. .+.|.
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~--~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTN--NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGG--GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCC-CCEEEEECC--CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 34688999999986 789999976 689999999976544443211111245689999997678999999965 78999
Q ss_pred EEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCC
Q psy14257 520 TVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMN 598 (841)
Q Consensus 520 ~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ 598 (841)
+++.+|.....+... .+..|.+|++. ++.||+++...+.|.+++.. |+...
T Consensus 104 ~~d~~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~------------------------- 155 (286)
T 1q7f_A 104 IYNQYGQFVRKFGAT--ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLH------------------------- 155 (286)
T ss_dssp EECTTSCEEEEECTT--TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-------------------------
T ss_pred EECCCCcEEEEecCc--cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEE-------------------------
Confidence 999998877666432 35689999995 57899999877777666531 11000
Q ss_pred CCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEec
Q psy14257 599 NGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDA 678 (841)
Q Consensus 599 ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~ 678 (841)
.+.. . ..+..|.+|++|+
T Consensus 156 --------------------------------------------------~~~~--~----------~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 156 --------------------------------------------------KFGC--S----------KHLEFPNGVVVND 173 (286)
T ss_dssp --------------------------------------------------EEEC--T----------TTCSSEEEEEECS
T ss_pred --------------------------------------------------EeCC--C----------CccCCcEEEEECC
Confidence 0000 0 1123467889997
Q ss_pred CCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEee-CCCCCcceeEEeecCCcEEEEec
Q psy14257 679 ANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVD-AGISHPSGLAIDWIAQNMFIAVS 757 (841)
Q Consensus 679 ~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~glAvD~~~~~LYw~~~ 757 (841)
. +.||+++...+.|++++.+|.. ...+.. ..+..|.+||+|+.+ +||+++
T Consensus 174 ~-g~l~v~~~~~~~i~~~~~~g~~--------------------------~~~~~~~g~~~~p~~i~~d~~G-~l~v~~- 224 (286)
T 1q7f_A 174 K-QEIFISDNRAHCVKVFNYEGQY--------------------------LRQIGGEGITNYPIGVGINSNG-EILIAD- 224 (286)
T ss_dssp S-SEEEEEEGGGTEEEEEETTCCE--------------------------EEEESCTTTSCSEEEEEECTTC-CEEEEE-
T ss_pred C-CCEEEEECCCCEEEEEcCCCCE--------------------------EEEEccCCccCCCcEEEECCCC-CEEEEe-
Confidence 4 6799999889999999987755 223322 225789999999865 899994
Q ss_pred CCCCC-eEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecC
Q psy14257 758 SPTQS-KIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD 821 (841)
Q Consensus 758 ~~~~~-~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~d 821 (841)
...+ +|.+++.+|.....+.... ....|.+|+++|. |.||+++... +|...++.
T Consensus 225 -~~~~~~i~~~~~~g~~~~~~~~~~-----~~~~~~~i~~~~~-g~l~vs~~~~---~v~v~~~~ 279 (286)
T 1q7f_A 225 -NHNNFNLTIFTQDGQLISALESKV-----KHAQCFDVALMDD-GSVVLASKDY---RLYIYRYV 279 (286)
T ss_dssp -CSSSCEEEEECTTSCEEEEEEESS-----CCSCEEEEEEETT-TEEEEEETTT---EEEEEECS
T ss_pred -CCCCEEEEEECCCCCEEEEEcccC-----CCCcceeEEECCC-CcEEEECCCC---eEEEEEcc
Confidence 4555 9999999998766665430 1346999999995 7899997532 57666543
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=133.15 Aligned_cols=63 Identities=51% Similarity=1.107 Sum_probs=58.5
Q ss_pred eeccCccCcCCcCCCCCCCCC-CCCCCCCCCCCC-CCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDE-LAEHCQDRKCDE-SHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde-~~~~C~~~~C~~-~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
+|||..|+|||..||.||||| . +|....|.+ .+|+|. +++||+..|+|||..||. |||||.+|
T Consensus 16 ~Ci~~~~~CDg~~DC~DgsDE~~--~C~~~~C~~~~~f~C~-~g~CI~~~~~CDG~~DC~--DgSDE~~C 80 (82)
T 2fyj_A 16 RCIPISWTCDLDDDCGDRSDESA--SCAYPTCFPLTQFTCN-NGRCININWRCDNDNDCG--DNSDEAGC 80 (82)
T ss_dssp CEEETTSSSSCSSSSCSTTTTTS--SCCCSSSCSSSEEECT-TSCEEETTCBSSSSBCCS--SSSSCSCC
T ss_pred CEEeccccCCCcccCCCcccccc--ccccccCCCCCceECC-CCCeEcHHHccCCCCcCC--CCccccCC
Confidence 699999999999999999999 6 898889965 899998 889999999999999999 99998775
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-14 Score=153.41 Aligned_cols=227 Identities=12% Similarity=0.022 Sum_probs=157.2
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCC--CeEE
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL--NTVE 374 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~--~~I~ 374 (841)
..|+|+|+|+. ++ +||+|. ..++|.+++.+|+....+ ..-..|.||++|.++ +||++|... .+|.
T Consensus 32 ~~pegia~~~~-g~--lyv~d~-------~~~~I~~~d~~g~~~~~~--~~~~~p~gia~~~dG-~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 32 TFLENLASAPD-GT--IFVTNH-------EVGEIVSITPDGNQQIHA--TVEGKVSGLAFTSNG-DLVATGWNADSIPVV 98 (306)
T ss_dssp CCEEEEEECTT-SC--EEEEET-------TTTEEEEECTTCCEEEEE--ECSSEEEEEEECTTS-CEEEEEECTTSCEEE
T ss_pred CCcceEEECCC-CC--EEEEeC-------CCCeEEEECCCCceEEEE--eCCCCceeEEEcCCC-cEEEEeccCCcceEE
Confidence 57999999974 34 556654 346999999998643322 223579999999875 499999754 3588
Q ss_pred EEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEE----------ecCCCC
Q psy14257 375 SVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTL----------IAGDME 444 (841)
Q Consensus 375 ~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l----------~~~~l~ 444 (841)
+++......+.+....... ...++ .+|.++++|++|...++|++++.++...++. ....+.
T Consensus 99 ~~d~~~g~~~~~~~~~~~~--~~~g~-------~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAI--FLNGI-------TPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp EEECTTSCEEEEEECTTCS--CEEEE-------EESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred EEcCCCCeEEEEEeCCCcc--ccCcc-------cccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 8876555454444321100 00011 1255688999998889999999875422221 123467
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCCC--C--CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG--E--HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG--~--~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~ 520 (841)
.|+|| ++..++||+++.. .++|+++++++ + .++.+.. +..|.||++|. +++||+++..+++|.+
T Consensus 170 ~pngi--s~dg~~lyv~d~~--~~~I~~~~~~~~g~~~~~~~~~~-------~~~P~gi~vd~-dG~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIFVE-------QTNIDDFAFDV-EGNLYGATHIYNSVVR 237 (306)
T ss_dssp SEEEE--EEETTEEEEEETT--TTEEEEEEBCTTSCBCCCEEEEE-------SCCCSSEEEBT-TCCEEEECBTTCCEEE
T ss_pred cCCCc--CcCCCEEEEEeCC--CCEEEEEEeCCCCCCCccEEEec-------cCCCCCeEECC-CCCEEEEeCCCCeEEE
Confidence 89998 6667899999988 78999999985 2 2344433 36799999996 5789999999999999
Q ss_pred EEcCCCeeEEEEcCCCCCCcceEEEEe-----cCeEEEEeCCC
Q psy14257 521 VTYDGKDHHVVLSNHDSLTHPFAIALF-----ENHVYWTDWRT 558 (841)
Q Consensus 521 ~~~dG~~~~~i~~~~~~l~~P~gla~~-----~~~lY~td~~~ 558 (841)
++++|.... +......+..|.++++. .++||+++...
T Consensus 238 ~~~~G~~~~-~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 238 IAPDRSTTI-IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECTTCCEEE-EECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ECCCCCEEE-EeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 999986543 22222225789999985 27999999764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-14 Score=152.60 Aligned_cols=251 Identities=16% Similarity=0.144 Sum_probs=167.1
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeC-------------------CCCCccceEEeeec
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT-------------------GLSTAEGLAVDWIG 308 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~-------------------~l~~p~giavD~~~ 308 (841)
+..+.++.|+.. +. +||++...++|++.+..++. .+.+... .+..|.||++|+..
T Consensus 18 ~~~p~~i~~d~~-g~--~l~v~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 18 SYAPNSFTFDST-NK--GFYTSVQDGRVIKYEGPNSG---FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp SSCCCCEECCTT-CS--SEEEECTTSEEEEECCTTTC---EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred cCCceEEEEcCC-CC--EEEEEcCCCeEEEECCCCCc---eEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 566777777764 55 89999999999999876543 2222211 12469999999633
Q ss_pred CceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc----cCcCCCceEEEEccCCEEEEEeCC---------------
Q psy14257 309 KNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT----KNIQWPSSLVIDYNQDILYWCDSH--------------- 369 (841)
Q Consensus 309 ~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~----~~~~~P~glavD~~~~~lYwaD~~--------------- 369 (841)
+++|+ ++.. ++|.++++++...+.+.. ..+..|++|++|+..++||++|..
T Consensus 92 g~l~v--~d~~--------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 92 NQLYI--VDCY--------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp TEEEE--EETT--------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred CcEEE--EECC--------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 45555 4432 358899888655554432 246789999999845799999975
Q ss_pred --CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCc---eEEEEecCCCC
Q psy14257 370 --LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQ---FRRTLIAGDME 444 (841)
Q Consensus 370 --~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~---~~~~l~~~~l~ 444 (841)
.+.|++++.++...+.+.. .+..+.. ++++..++.||++|...++|.++++++. ..+++.. +.
T Consensus 162 ~~~g~v~~~d~~~~~~~~~~~--~~~~p~g--------ia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~ 229 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETTLLLK--ELHVPGG--------AEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IP 229 (322)
T ss_dssp CCCEEEEEEETTTTEEEEEEE--EESCCCE--------EEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CS
T ss_pred CCCceEEEEeCCCCEEEEecc--CCccCcc--------eEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CC
Confidence 2679999887665544322 1222222 2344444679999999999999999863 2333332 22
Q ss_pred CceeEEEcCCCCeEEEEecC--------CCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC
Q psy14257 445 SPRAIALDPRFGLLFWTDWD--------SKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~--------~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~ 516 (841)
.|.+|++|+. |.||++++. ...++|.+++.+|.....+.... ...+..|.+++.+ +++||+++..++
T Consensus 230 gP~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~--g~~~~~~~~~~~~--~g~L~v~~~~~~ 304 (322)
T 2fp8_A 230 NPGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP--PFAGEHFEQIQEH--DGLLYIGTLFHG 304 (322)
T ss_dssp SEEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCT--TTTTSCCCEEEEE--TTEEEEECSSCS
T ss_pred CCCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCC--CCccccceEEEEe--CCEEEEeecCCC
Confidence 2999999985 789999865 11367999999987655554310 0126789998875 789999999999
Q ss_pred eEEEEEcCCCeeEEE
Q psy14257 517 SIHTVTYDGKDHHVV 531 (841)
Q Consensus 517 ~I~~~~~dG~~~~~i 531 (841)
+|.+++++.+...++
T Consensus 305 ~i~~~~~~~~~~~~~ 319 (322)
T 2fp8_A 305 SVGILVYDKKGNSFV 319 (322)
T ss_dssp EEEEEEC--------
T ss_pred ceEEEecccccCccc
Confidence 999999887655433
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-13 Score=145.35 Aligned_cols=289 Identities=9% Similarity=0.114 Sum_probs=186.6
Q ss_pred ceEEEEecC-----CCcEEEEccCC-ceEEEEec----CCC-CCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCc
Q psy14257 413 KNLYWVESN-----LDQIEVAKLSG-QFRRTLIA----GDM-ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHR 480 (841)
Q Consensus 413 ~~LY~tD~~-----~~~I~v~~~~G-~~~~~l~~----~~l-~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~ 480 (841)
+.+|++..+ .+.|.+++++. +....+.. ..+ ..|++|+++ .++||++... .+.|.+++.. ++..
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~--~~~v~viD~~t~~~~ 77 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNN--SHVIFAIDINTFKEV 77 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGG--GTEEEEEETTTCCEE
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcC--CCEEEEEECcccEEE
Confidence 456777665 56788887764 33222211 112 468999996 5799999986 6899999986 3333
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC---CCCCcceEEEEecCeEEEEeCC
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH---DSLTHPFAIALFENHVYWTDWR 557 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~---~~l~~P~gla~~~~~lY~td~~ 557 (841)
..+ . ....|.+|++++. ++||+++...+.|.++++........+... .....|.+|++.+++||++++.
T Consensus 78 ~~i-~------~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~ 149 (328)
T 3dsm_A 78 GRI-T------GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS 149 (328)
T ss_dssp EEE-E------CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT
T ss_pred EEc-C------CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC
Confidence 333 2 4678999999754 599999977899999999876554333221 1223799999999999999994
Q ss_pred -CCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCc
Q psy14257 558 -TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636 (841)
Q Consensus 558 -~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~ 636 (841)
.+.|..++..+++....+... ..| .+..+.+|+
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~g-~~p-------------------------------------~~i~~~~dG-------- 183 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTIG-IQP-------------------------------------TSLVMDKYN-------- 183 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEECS-SCB-------------------------------------CCCEECTTS--------
T ss_pred CCCEEEEEECCCCeEEEEEEcC-CCc-------------------------------------cceEEcCCC--------
Confidence 889999998877655444311 111 111111111
Q ss_pred eeEEeec-----------CCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceee
Q psy14257 637 QFIIFSR-----------PREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQL 705 (841)
Q Consensus 637 ~~l~~~~-----------~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~ 705 (841)
.+++.+. ...|..++..... ....+.++.-..|.+|++++..+.||+++. +|+++++.+..+.
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~- 257 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVP- 257 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCC-
T ss_pred CEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCcee-
Confidence 1111111 1346666654321 111233332347899999999999999984 8999888654410
Q ss_pred eeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecC--CCCCeEEEEecCCcceEEEEcCCCC
Q psy14257 706 VVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSS--PTQSKIVVCNLEGEYQTTILSNESN 783 (841)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~--~~~~~I~v~~l~g~~~~~~~~~~~~ 783 (841)
...++......|.|||+|+.+++||+++.. ...++|.+++++|+....+--+
T Consensus 258 -----------------------~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G--- 311 (328)
T 3dsm_A 258 -----------------------VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVG--- 311 (328)
T ss_dssp -----------------------SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEE---
T ss_pred -----------------------eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEec---
Confidence 001111124679999999989999999400 4678999999998866655433
Q ss_pred CCCcCCCceEEEE
Q psy14257 784 DTSTLSKISSIAV 796 (841)
Q Consensus 784 ~~~~l~~p~~iav 796 (841)
..|.+|+.
T Consensus 312 -----~~P~~~~~ 319 (328)
T 3dsm_A 312 -----IIPGAFCW 319 (328)
T ss_dssp -----ESEEEEEE
T ss_pred -----cCcceEEE
Confidence 57888875
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-16 Score=132.65 Aligned_cols=63 Identities=51% Similarity=1.130 Sum_probs=58.6
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCC--Ccc
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE--DHC 69 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde--~~C 69 (841)
+|||..|+|||..||.|||||. +|....|.+.+|+|. +++|||..|+|||..||. ||||| .+|
T Consensus 14 ~CI~~~~~CDg~~DC~DgSDE~--~C~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~--dgsDE~~~~C 78 (80)
T 2fcw_B 14 KCISRQFVCDSDRDCLDGSDEA--SCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCE--DGSDEWPQRC 78 (80)
T ss_dssp CEEEGGGTTSSSCCSTTCTTTT--THHHHHCCTTEEECT-TSCEEEGGGTTSSSCCST--TCGGGCGGGC
T ss_pred CEEeeecccCCcccCCCccccc--ccccccCCceeeECC-CCCEEecccccCCCcCCC--CCCCcCcccC
Confidence 6999999999999999999999 897778999999998 799999999999999999 99999 544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=147.72 Aligned_cols=213 Identities=14% Similarity=0.085 Sum_probs=153.6
Q ss_pred cccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC
Q psy14257 342 PLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN 421 (841)
Q Consensus 342 ~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~ 421 (841)
.++......++|.++|++++.|||+|...++|+++++++...+.+... ....+ ++++. .++||++.
T Consensus 6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~-----~~~~~------i~~~~-dG~l~v~~-- 71 (297)
T 3g4e_A 6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMD-----APVSS------VALRQ-SGGYVATI-- 71 (297)
T ss_dssp EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECS-----SCEEE------EEEBT-TSSEEEEE--
T ss_pred EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCC-----CceEE------EEECC-CCCEEEEE--
Confidence 344567889999999999999999999999999999998765443211 00001 12222 25677776
Q ss_pred CCcEEEEccCCceEEEEecC----CCCCceeEEEcCCCCeEEEEecCC---------CCCeEEEecCCCCCcEEEEEecc
Q psy14257 422 LDQIEVAKLSGQFRRTLIAG----DMESPRAIALDPRFGLLFWTDWDS---------KAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~~----~l~~P~giavd~~~g~Ly~td~~~---------~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
.+.|.++++++...+.+... ....|++|++|+. |.||+++.+. ...+|++++.+|.... +.
T Consensus 72 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~---- 145 (297)
T 3g4e_A 72 GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF---- 145 (297)
T ss_dssp TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE----
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee----
Confidence 46899999876555544432 2356899999986 7799987431 2458999998875443 22
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC---CC--eeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD---GK--DHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVI 562 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d---G~--~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~ 562 (841)
..+..|+||+++++++.|||++...++|.+++++ |. .++.+.........|.||+++ +|+||++.+..++|.
T Consensus 146 --~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 146 --DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVI 223 (297)
T ss_dssp --EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEE
T ss_pred --eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEE
Confidence 2467899999999888999999999999999875 32 234444332223579999995 589999999999999
Q ss_pred EEeccCCcceEEEe
Q psy14257 563 RANKWNGSDVTLIQ 576 (841)
Q Consensus 563 ~~~~~~g~~~~~i~ 576 (841)
++++.+|+....+.
T Consensus 224 ~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 224 RLDPVTGKRLQTVK 237 (297)
T ss_dssp EECTTTCCEEEEEE
T ss_pred EEcCCCceEEEEEE
Confidence 99988787665553
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-13 Score=146.99 Aligned_cols=241 Identities=10% Similarity=0.023 Sum_probs=166.4
Q ss_pred eEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccc
Q psy14257 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLV 344 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~ 344 (841)
||++....+.|.++++..+. ...++ .....|++|++++.+ + +|+++. .+++|.++++........+
T Consensus 56 lyv~~~~~~~v~viD~~t~~--~~~~i--~~~~~p~~i~~~~~g-~--lyv~~~-------~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 56 GWIVVNNSHVIFAIDINTFK--EVGRI--TGFTSPRYIHFLSDE-K--AYVTQI-------WDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp EEEEEGGGTEEEEEETTTCC--EEEEE--ECCSSEEEEEEEETT-E--EEEEEB-------SCSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCEEEEEECcccE--EEEEc--CCCCCCcEEEEeCCC-e--EEEEEC-------CCCeEEEEECCCCeEEEEE
Confidence 99999988999999887654 22333 346789999997643 4 455552 1358999987654333222
Q ss_pred cc-----CcCCCceEEEEccCCEEEEEeC-CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEE
Q psy14257 345 TK-----NIQWPSSLVIDYNQDILYWCDS-HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWV 418 (841)
Q Consensus 345 ~~-----~~~~P~glavD~~~~~lYwaD~-~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~t 418 (841)
.. ....|.+|++ .+++||+++. ..++|.++++........+... ..+.. ++++. .++||++
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~--------i~~~~-dG~l~v~ 188 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTS--------LVMDK-YNKMWTI 188 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCC--------CEECT-TSEEEEE
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccc--------eEEcC-CCCEEEE
Confidence 21 2238999999 5899999998 4889999998765443332221 11111 12332 2779998
Q ss_pred ecCC----------CcEEEEccCCc-eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcE--EEEE
Q psy14257 419 ESNL----------DQIEVAKLSGQ-FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRS--VIVR 485 (841)
Q Consensus 419 D~~~----------~~I~v~~~~G~-~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~--~i~~ 485 (841)
.... +.|.+++.... ....+....-..|++|+++|.+++||+++. .|++++++..... .++.
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~ 263 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLE 263 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBC
T ss_pred ECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeec
Confidence 8765 78999998744 333433222258999999999999999873 7899888643321 1111
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEe----CCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWID----AKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d----~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~ 546 (841)
.....|.||++|+.+++||+++ ...++|.+++++|+...++..+ ..|.+|+.
T Consensus 264 -----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G----~~P~~~~~ 319 (328)
T 3dsm_A 264 -----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVG----IIPGAFCW 319 (328)
T ss_dssp -----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEE----ESEEEEEE
T ss_pred -----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEec----cCcceEEE
Confidence 1257899999998899999999 7788999999999888777543 46777776
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-13 Score=143.12 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=157.5
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
..+.++.|+.. ++ |||+|...++|++++.+++ ....+.. -..|.||++++.+ ++ |+++++.. ..
T Consensus 32 ~~pegia~~~~-g~--lyv~d~~~~~I~~~d~~g~----~~~~~~~-~~~p~gia~~~dG-~l--~vad~~~~-----~~ 95 (306)
T 2p4o_A 32 TFLENLASAPD-GT--IFVTNHEVGEIVSITPDGN----QQIHATV-EGKVSGLAFTSNG-DL--VATGWNAD-----SI 95 (306)
T ss_dssp CCEEEEEECTT-SC--EEEEETTTTEEEEECTTCC----EEEEEEC-SSEEEEEEECTTS-CE--EEEEECTT-----SC
T ss_pred CCcceEEECCC-CC--EEEEeCCCCeEEEECCCCc----eEEEEeC-CCCceeEEEcCCC-cE--EEEeccCC-----cc
Confidence 45667777763 56 9999999999999987653 2233333 3579999999654 44 45665421 12
Q ss_pred CEEEEcc-CCCccccccc-cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCc-cccCCCCC
Q psy14257 329 GIEKAGM-HGENRSPLVT-KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSR-VGIPNCRP 405 (841)
Q Consensus 329 ~I~~~~~-dG~~~~~l~~-~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~-~~i~~~~~ 405 (841)
+|.+++. +|+ .+.+.. .....|+|++++ ..+++|++|...++|++++.++...++......+..... .++ ..|
T Consensus 96 ~v~~~d~~~g~-~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~--~~p 171 (306)
T 2p4o_A 96 PVVSLVKSDGT-VETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF--PAA 171 (306)
T ss_dssp EEEEEECTTSC-EEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS--CSE
T ss_pred eEEEEcCCCCe-EEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC--CcC
Confidence 5888764 454 333332 346778999875 567899999989999999987643232211110000000 000 011
Q ss_pred CccccccceEEEEecCCCcEEEEccCC--ce--EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcE
Q psy14257 406 EDNLWIGKNLYWVESNLDQIEVAKLSG--QF--RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRS 481 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~~~~I~v~~~~G--~~--~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~ 481 (841)
..++..++.||++|...++|.++++++ +. .+++.. +..|.+|++|+. |.||++++. .++|.+++.+|+...
T Consensus 172 ngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~d-G~l~va~~~--~~~V~~~~~~G~~~~ 246 (306)
T 2p4o_A 172 NGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVE-GNLYGATHI--YNSVVRIAPDRSTTI 246 (306)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTT-CCEEEECBT--TCCEEEECTTCCEEE
T ss_pred CCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCC-CCEEEEeCC--CCeEEEECCCCCEEE
Confidence 223445678999999999999999874 21 233332 368999999986 789999998 789999999875432
Q ss_pred EEEEecccCCCCCCceeEEEe---ccCCEEEEEeCC
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLD---YQLTRIYWIDAK 514 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD---~~~~~LYw~d~~ 514 (841)
+... ...+..|.+++++ ++.++||+++..
T Consensus 247 -~~~~---~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 247 -IAQA---EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -EECG---GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -Eeec---ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2211 1356889999998 677999999875
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=151.71 Aligned_cols=243 Identities=16% Similarity=0.153 Sum_probs=158.4
Q ss_pred EEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccc----ccccCcCCCceEEEEcc---CCE
Q psy14257 290 VVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSP----LVTKNIQWPSSLVIDYN---QDI 362 (841)
Q Consensus 290 ~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~----l~~~~~~~P~glavD~~---~~~ 362 (841)
.++..++..|++|++++.+ ++ |+++. .++|.+.+ +|+.... +.......|.||+++++ +++
T Consensus 24 ~~va~~l~~P~~ia~~pdG-~l--~V~e~--------~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 24 EEVVGGLEVPWALAFLPDG-GM--LIAER--------PGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp EEEECCCSCEEEEEECTTS-CE--EEEET--------TTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCE
T ss_pred EEEECCCCCceEEEEcCCC-eE--EEEeC--------CCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCE
Confidence 4556789999999999765 34 44543 26899998 7652211 22335678999999998 899
Q ss_pred EEEEeCCC-----CeEEEEEecCCc---cEEEEe-eeeecCCCccccCCCCCCccccccceEEEEecC------------
Q psy14257 363 LYWCDSHL-----NTVESVRVDGSE---RTVSFN-LEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN------------ 421 (841)
Q Consensus 363 lYwaD~~~-----~~I~~~~ldG~~---~~~~~~-~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~------------ 421 (841)
||+++... ++|.++++++.. .++++. ...... +......++++. .++||+++..
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~----~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~ 166 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPH----GLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLAS 166 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTT----CCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCC----CCcCCceEEECC-CCCEEEEECCCCCCccccCCCC
Confidence 99999854 789999998752 223322 110000 000111233443 2699999742
Q ss_pred -CCcEEEEccCCce------------EEEEecCCCCCceeEEEcCCCCeEEEEecCCCC------CeEEEecCCCC----
Q psy14257 422 -LDQIEVAKLSGQF------------RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKA------PRIERCSMSGE---- 478 (841)
Q Consensus 422 -~~~I~v~~~~G~~------------~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~------~~I~r~~ldG~---- 478 (841)
.++|.+++.+|+. ...+...++.+|.||++||..|.||++|.+... ..|.++...+.
T Consensus 167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp 246 (352)
T 2ism_A 167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWP 246 (352)
T ss_dssp SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTT
T ss_pred CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCC
Confidence 3689999999832 112334467899999999988999999987321 13665543220
Q ss_pred ----------CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe-------eEEEEcCCCCCCcc
Q psy14257 479 ----------HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD-------HHVVLSNHDSLTHP 541 (841)
Q Consensus 479 ----------~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~-------~~~i~~~~~~l~~P 541 (841)
....+... .....|.|+++ .++.||+++...++|.++++++.. ...++. ...+|
T Consensus 247 ~~~g~~~~~~~~~p~~~~----~~~~ap~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~---~~~rp 317 (352)
T 2ism_A 247 RVVGRGNDPRYRDPLYFW----PQGFPPGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS---GFGRL 317 (352)
T ss_dssp TCCSCCCCTTSCCCSEEC----TTCCCEEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE---SSCCE
T ss_pred cccCCCCCCCCcCCeEec----CCCCCCcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc---cCCCe
Confidence 00111110 12346899999 468999999999999999988543 233332 25689
Q ss_pred eEEEEe-cCeEEEEeCCC
Q psy14257 542 FAIALF-ENHVYWTDWRT 558 (841)
Q Consensus 542 ~gla~~-~~~lY~td~~~ 558 (841)
.+|++. +|.||++++..
T Consensus 318 ~~v~~~pdG~lyv~~~~~ 335 (352)
T 2ism_A 318 REVQVGPDGALYVTTSNR 335 (352)
T ss_dssp EEEEECTTSCEEEEECST
T ss_pred eEEEECCCCcEEEEEeCC
Confidence 999995 58999999864
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-13 Score=147.98 Aligned_cols=249 Identities=12% Similarity=0.081 Sum_probs=165.2
Q ss_pred EEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccc-----ccCcCCCceEEEEcc---CC
Q psy14257 290 VVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLV-----TKNIQWPSSLVIDYN---QD 361 (841)
Q Consensus 290 ~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~-----~~~~~~P~glavD~~---~~ 361 (841)
.++..++..|++||+++.+ ++ |+++. .++|.+++.+|. +++. ......|.||+++++ ++
T Consensus 22 ~~va~~l~~P~~ia~~pdG-~l--~V~e~--------~g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 22 SEVASDLEVPWSIAPLGGG-RY--LVTER--------PGRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp EEEECSCSCEEEEEEEETT-EE--EEEET--------TTEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSC
T ss_pred EEEeCCCCCCeEEEEcCCC-eE--EEEeC--------CCEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCC
Confidence 3456789999999999864 44 44543 269999988876 3321 234678999999998 89
Q ss_pred EEEEEeCC---C----CeEEEEEecCCc-----cEEEEe-eeeecCCCccccCCCCCCccccccceEEEEecC-------
Q psy14257 362 ILYWCDSH---L----NTVESVRVDGSE-----RTVSFN-LEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN------- 421 (841)
Q Consensus 362 ~lYwaD~~---~----~~I~~~~ldG~~-----~~~~~~-~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~------- 421 (841)
+||+++.. . ++|.|+++++.. .++++. ... .. ......++++. .++||++...
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~--~~----~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~ 161 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPG--AY----IHNGGRIRFGP-DGMLYITTGDAADPRLA 161 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEEC--CS----SCCCCCEEECT-TSCEEEECCCTTCGGGG
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCC--CC----CcCCceEEECC-CCcEEEEECCCCCCccc
Confidence 99999874 3 789999998762 333322 110 00 00011123333 3789999632
Q ss_pred ------CCcEEEEccCCce--------EEEEecCCCCCceeEEEcCCCCeEEEEecCCCC-CeEEEecCCCCC-------
Q psy14257 422 ------LDQIEVAKLSGQF--------RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKA-PRIERCSMSGEH------- 479 (841)
Q Consensus 422 ------~~~I~v~~~~G~~--------~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~-~~I~r~~ldG~~------- 479 (841)
.++|.+++.+|+. .+ +...++.+|.||++||..|.||++|.+... ..|.++.. |.+
T Consensus 162 ~d~~~~~G~I~ri~~dG~~p~~npf~~~~-i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~ 239 (354)
T 3a9g_A 162 QDLSSLAGKILRVDEEGRPPADNPFPNSP-IWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLAT 239 (354)
T ss_dssp TCTTCCSSEEEEECTTSCCCTTSSSTTCC-EEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCC
T ss_pred cCCCCCCeEEEEEcCCCCCCCCCCCCCCc-EEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCccc
Confidence 3689999999972 22 344578999999999988999999987321 23555443 221
Q ss_pred --------cEEEEEecccCCCCCCceeEEE-------eccCCEEEEEeCCCCeEEEEEcCCCe----eEEEEcCCCCCCc
Q psy14257 480 --------RSVIVRVDLLTSRGAWPNGLTL-------DYQLTRIYWIDAKSDSIHTVTYDGKD----HHVVLSNHDSLTH 540 (841)
Q Consensus 480 --------~~~i~~~~~~~~~~~~P~glal-------D~~~~~LYw~d~~~~~I~~~~~dG~~----~~~i~~~~~~l~~ 540 (841)
...+... ......|.|+++ + ..++||+++...++|.++++++.. ...++.. ....
T Consensus 240 g~~~~~~~~~p~~~~---~~~~~ap~G~~~y~g~~fp~-~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~~~r 313 (354)
T 3a9g_A 240 GKAGRGEFVDPVIDT---GSETWAPSGASFVHGDMFPG-LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN--VFGR 313 (354)
T ss_dssp SCCCCTTSCCCSEEC---TTCCCCEEEEEECCSSSCGG-GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT--TSCC
T ss_pred CCCCCCCCcCCEeec---CCCCcCCcceEEECCCCCcc-cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC--CCCC
Confidence 0111110 012346999999 5 468999999999999999998632 1233332 2568
Q ss_pred ceEEEEe-cCeEEEEeCC-CC---------eEEEEec
Q psy14257 541 PFAIALF-ENHVYWTDWR-TN---------SVIRANK 566 (841)
Q Consensus 541 P~gla~~-~~~lY~td~~-~~---------~i~~~~~ 566 (841)
|.+|++. ++.||++++. .+ +|+|+.+
T Consensus 314 p~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~ 350 (354)
T 3a9g_A 314 LRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVS 350 (354)
T ss_dssp EEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred eeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEec
Confidence 9999995 5899999974 44 7887764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-13 Score=142.97 Aligned_cols=240 Identities=9% Similarity=0.084 Sum_probs=159.0
Q ss_pred cccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCC
Q psy14257 247 SLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSS 326 (841)
Q Consensus 247 ~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~ 326 (841)
...-+.+..|+.+.+. |||+|...++|++.+++++. .. .+.. -..|.++++++.+ ++|+. .
T Consensus 11 ~~~~~Egp~w~~~~~~--l~~~d~~~~~i~~~d~~~~~---~~-~~~~-~~~~~~i~~~~dG-~l~v~--~--------- 71 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNS--LLFVDIPAKKVCRWDSFTKQ---VQ-RVTM-DAPVSSVALRQSG-GYVAT--I--------- 71 (297)
T ss_dssp CCSBEEEEEEETTTTE--EEEEETTTTEEEEEETTTCC---EE-EEEC-SSCEEEEEEBTTS-SEEEE--E---------
T ss_pred CCccccCCeEECCCCE--EEEEECCCCEEEEEECCCCc---EE-EEeC-CCceEEEEECCCC-CEEEE--E---------
Confidence 3445678888887666 99999999999999987654 22 2222 2478999999765 34442 1
Q ss_pred CCCEEEEccCCCcccccccc----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTK----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
..+|.+++.++...+.+... ....|+++++|+++ +||+++......
T Consensus 72 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~----------------------------- 121 (297)
T 3g4e_A 72 GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETA----------------------------- 121 (297)
T ss_dssp TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSB-----------------------------
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccc-----------------------------
Confidence 23788888875555544332 34568888888753 466665321100
Q ss_pred CCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC---CC-
Q psy14257 403 CRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS---GE- 478 (841)
Q Consensus 403 ~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld---G~- 478 (841)
.+..+...+.|++++.+|+.... ...+..|++|+++|....|||++.. ..+|++++++ |.
T Consensus 122 ------------~~~~~~~~~~l~~~d~~g~~~~~--~~~~~~pngi~~spdg~~lyv~~~~--~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 122 ------------PAVLERHQGALYSLFPDHHVKKY--FDQVDISNGLDWSLDHKIFYYIDSL--SYSVDAFDYDLQTGQI 185 (297)
T ss_dssp ------------TTBCCTTCEEEEEECTTSCEEEE--EEEESBEEEEEECTTSCEEEEEEGG--GTEEEEEEECTTTCCE
T ss_pred ------------cccccCCCcEEEEEECCCCEEEE--eeccccccceEEcCCCCEEEEecCC--CCcEEEEeccCCCCcc
Confidence 00000122455566665554332 2345789999999998899999987 6899999875 32
Q ss_pred -CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcceEEEEec---CeEEE
Q psy14257 479 -HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHPFAIALFE---NHVYW 553 (841)
Q Consensus 479 -~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P~gla~~~---~~lY~ 553 (841)
.++.+.... .....|.||++|. +++||++....++|.+++++ |.....+... ...|..+++.+ +.||+
T Consensus 186 ~~~~~~~~~~---~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p---~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 186 SNRRSVYKLE---KEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKLP---VDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp EEEEEEEECC---GGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEECS---SSBEEEEEEESGGGCEEEE
T ss_pred cCcEEEEECC---CCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEECC---CCCceEEEEeCCCCCEEEE
Confidence 123344310 1235799999995 57999999888999999998 7766666432 35788888853 58999
Q ss_pred EeCCC
Q psy14257 554 TDWRT 558 (841)
Q Consensus 554 td~~~ 558 (841)
|....
T Consensus 259 t~~~~ 263 (297)
T 3g4e_A 259 TCARD 263 (297)
T ss_dssp EEBCT
T ss_pred EcCCc
Confidence 98653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-12 Score=135.90 Aligned_cols=267 Identities=17% Similarity=0.138 Sum_probs=175.2
Q ss_pred cccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecC
Q psy14257 230 ELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGK 309 (841)
Q Consensus 230 ~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~ 309 (841)
.+..+-......+.+..+...+.++.|+...+. |||++...+.|++.+++++ ...+......|.+|++|+.+
T Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~eg~~~d~~g~~--l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg- 80 (296)
T 3e5z_A 9 EFLDLFPAGAEARRLADGFTWTEGPVYVPARSA--VIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQG- 80 (296)
T ss_dssp GGGGGSCTTCCCEEEECCCSSEEEEEEEGGGTE--EEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTC-
T ss_pred hHHhhcCCCCcEEEEecCCccccCCeEeCCCCE--EEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCC-
Confidence 444454455666777777778889999887555 9999999999999988764 22334455679999999754
Q ss_pred ceeEEEeeecCCCCCCCCCCEEEEcc-CCCccccccc----cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccE
Q psy14257 310 NLYMFWAFWSLSPSNSSDGGIEKAGM-HGENRSPLVT----KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384 (841)
Q Consensus 310 ~~y~~~td~~~~~~~~~~~~I~~~~~-dG~~~~~l~~----~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~ 384 (841)
++| +++. ..++|.+++. +|+. +.+.. ..+..|++|++|++ ++||++|...+.+.. ..+
T Consensus 81 ~l~--v~~~-------~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~--~~~---- 143 (296)
T 3e5z_A 81 HLI--ACSH-------GLRRLERQREPGGEW-ESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKP--EEG---- 143 (296)
T ss_dssp CEE--EEET-------TTTEEEEECSTTCCE-EEEECEETTEECCCCCCEEECTT-SCEEEEECSHHHHCG--GGS----
T ss_pred cEE--EEec-------CCCeEEEEcCCCCcE-EEEeeccCCCCCCCCCCEEECCC-CCEEEECCccccccc--ccc----
Confidence 444 3432 2357999988 5553 33321 24567899999974 467777653111000 000
Q ss_pred EEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC
Q psy14257 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~ 464 (841)
..-..+...+.|++++.+|+... +...+..|++|+++|....| |++..
T Consensus 144 -----------------------------~~~~~~~~~~~l~~~~~~g~~~~--~~~~~~~~~gi~~s~dg~~l-v~~~~ 191 (296)
T 3e5z_A 144 -----------------------------YGGEMELPGRWVFRLAPDGTLSA--PIRDRVKPNGLAFLPSGNLL-VSDTG 191 (296)
T ss_dssp -----------------------------SCCCCCSSSCEEEEECTTSCEEE--EECCCSSEEEEEECTTSCEE-EEETT
T ss_pred -----------------------------ccccccCCCcEEEEECCCCCEEE--eecCCCCCccEEECCCCCEE-EEeCC
Confidence 00000111245666666654432 23467889999999987777 99977
Q ss_pred CCCCeEEEecCC--CCC---cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCC
Q psy14257 465 SKAPRIERCSMS--GEH---RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLT 539 (841)
Q Consensus 465 ~~~~~I~r~~ld--G~~---~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~ 539 (841)
..+|++.+++ |+. ...+ . .....|.+|++|. +++||++. .+.|.+++++|.....+.... .
T Consensus 192 --~~~i~~~~~~~~g~~~~~~~~~-~-----~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~---~ 257 (296)
T 3e5z_A 192 --DNATHRYCLNARGETEYQGVHF-T-----VEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGDELGRVLTPQ---T 257 (296)
T ss_dssp --TTEEEEEEECSSSCEEEEEEEE-C-----CSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSCEEEEEECSS---C
T ss_pred --CCeEEEEEECCCCcCcCCCeEe-e-----CCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCCEEEEEECCC---C
Confidence 6899999986 332 2233 2 3556799999995 57899998 689999999988776665432 2
Q ss_pred cceEEEEec---CeEEEEeCCCCeEEEEeccCCc
Q psy14257 540 HPFAIALFE---NHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 540 ~P~gla~~~---~~lY~td~~~~~i~~~~~~~g~ 570 (841)
|..+++.+ +.||++.. +.+++++..+.+
T Consensus 258 -~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~ 288 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRG 288 (296)
T ss_dssp -CCEEEEESTTSCEEEEEET--TEEEEEECSCCB
T ss_pred -ceeEEEECCCCCEEEEEcC--CeEEEEEccccc
Confidence 77888742 47999874 578888865443
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-15 Score=123.84 Aligned_cols=76 Identities=42% Similarity=1.031 Sum_probs=65.5
Q ss_pred CCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCC-CccccCCCCCCCCCCccCCCCCCCCCCCCCC-CCcccCCCCC
Q psy14257 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE-DHCVNDCTDWSDETNCTHSGNRTISAPACEP-HEFDCQDVLR 107 (841)
Q Consensus 30 ~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde-~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~-~~~~C~~~~~ 107 (841)
..|.+.+|+|. +++|||..|+|||..||. ||||| .+| .. ..|.+ .+|.|.+ +
T Consensus 3 ~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~--DgsDE~~~C-------------~~--------~~C~~~~~f~C~~--g 56 (82)
T 2fyj_A 3 RTCPPNQFSCA-SGRCIPISWTCDLDDDCG--DRSDESASC-------------AY--------PTCFPLTQFTCNN--G 56 (82)
T ss_dssp SSSCTTEEETT-SSCEEETTSSSSCSSSSC--STTTTTSSC-------------CC--------SSSCSSSEEECTT--S
T ss_pred CCCCCCceEeC-CCCEEeccccCCCcccCC--Ccccccccc-------------cc--------ccCCCCCceECCC--C
Confidence 57899999998 789999999999999999 88888 443 21 24644 7899997 8
Q ss_pred eEecCCCCCCCCCCCCCCCCCccc
Q psy14257 108 TCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 108 ~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
.||+.+++|||..+|.+|+||..|
T Consensus 57 ~CI~~~~~CDG~~DC~DgSDE~~C 80 (82)
T 2fyj_A 57 RCININWRCDNDNDCGDNSDEAGC 80 (82)
T ss_dssp CEEETTCBSSSSBCCSSSSSCSCC
T ss_pred CeEcHHHccCCCCcCCCCccccCC
Confidence 999999999999999999999766
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-15 Score=124.47 Aligned_cols=72 Identities=40% Similarity=0.995 Sum_probs=63.2
Q ss_pred CCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccCCCCCeEe
Q psy14257 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCI 110 (841)
Q Consensus 31 ~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~~~~~C~~~~~~Ci 110 (841)
+|.+.+|+|. +++|||..|+|||..||. |||||.+| .. ..|.+.+|.|.+ +.||
T Consensus 2 ~C~~~~F~C~-~g~CI~~~~~CDg~~DC~--DgSDE~~C-------------~~--------~~C~~~~f~C~~--g~Ci 55 (80)
T 2fcw_B 2 TCSQAEFRCH-DGKCISRQFVCDSDRDCL--DGSDEASC-------------PV--------LTCGPASFQCNS--STCI 55 (80)
T ss_dssp CCCTTEEECT-TSCEEEGGGTTSSSCCST--TCTTTTTH-------------HH--------HHCCTTEEECTT--SCEE
T ss_pred CCCCCccCCC-CCCEEeeecccCCcccCC--Cccccccc-------------cc--------ccCCceeeECCC--CCEE
Confidence 6889999998 799999999999999999 88887654 21 236677899987 8999
Q ss_pred cCCCCCCCCCCCCCCCCC
Q psy14257 111 PKALVCDGEPACFNGEDE 128 (841)
Q Consensus 111 ~~~~~Cdg~~~C~~g~de 128 (841)
+.+++|||..+|.+|+||
T Consensus 56 ~~~~~CDg~~DC~dgsDE 73 (80)
T 2fcw_B 56 PQLWACDNDPDCEDGSDE 73 (80)
T ss_dssp EGGGTTSSSCCSTTCGGG
T ss_pred ecccccCCCcCCCCCCCc
Confidence 999999999999999999
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-12 Score=138.37 Aligned_cols=257 Identities=14% Similarity=0.209 Sum_probs=166.4
Q ss_pred cccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEee
Q psy14257 238 TFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAF 317 (841)
Q Consensus 238 ~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td 317 (841)
...++.+..+...+.+..|+...+. |||+|...++|++.+.++ . .+ .+......|.++++|+.+ ++|+ ++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~--l~~~d~~~~~i~~~~~~g-~---~~-~~~~~~~~~~gl~~d~dG-~l~v--~~ 103 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRT--LVWSDLVGRRVLGWREDG-T---VD-VLLDATAFTNGNAVDAQQ-RLVH--CE 103 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTE--EEEEETTTTEEEEEETTS-C---EE-EEEESCSCEEEEEECTTS-CEEE--EE
T ss_pred CCceEEEecCCcCccCCeEeCCCCE--EEEEECCCCEEEEEeCCC-C---EE-EEeCCCCccceeeECCCC-CEEE--EE
Confidence 4567778888777888889887555 999999999999997743 2 22 333344579999999754 4554 33
Q ss_pred ecCCCCCCCCCCEEEEccCCCccccccc----cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeec
Q psy14257 318 WSLSPSNSSDGGIEKAGMHGENRSPLVT----KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLG 393 (841)
Q Consensus 318 ~~~~~~~~~~~~I~~~~~dG~~~~~l~~----~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~ 393 (841)
. ..++|.+++.+|+. +.+.. ..+..|++|++|++ ++||++|...+.... ..|..
T Consensus 104 ~-------~~~~v~~~~~~g~~-~~~~~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~~~--~~~~~----------- 161 (305)
T 3dr2_A 104 H-------GRRAITRSDADGQA-HLLVGRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLRKP--SQGCP----------- 161 (305)
T ss_dssp T-------TTTEEEEECTTSCE-EEEECEETTEECSCCCCEEECTT-SCEEEECCSGGGSCG--GGSCC-----------
T ss_pred C-------CCCEEEEECCCCCE-EEEEeccCCCccCCCCCEEECCC-CCEEEeCcCCCcccc--ccccc-----------
Confidence 2 23589999988763 33322 24567999999974 568888753221000 00000
Q ss_pred CCCccccCCCCCCccccccceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEEEcCCCCeEEEEecCC---CCCe
Q psy14257 394 SDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS---KAPR 469 (841)
Q Consensus 394 ~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~---~~~~ 469 (841)
...+...+.|++++.+ |+.... . .+..|++|+++|....||+++... ...+
T Consensus 162 ----------------------~~~~~~~~~v~~~d~~~g~~~~~-~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 162 ----------------------ADPELAHHSVYRLPPDGSPLQRM-A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp ----------------------CCCSSSCEEEEEECSSSCCCEEE-E--EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred ----------------------cccccCCCeEEEEcCCCCcEEEE-e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 0000112345555553 333322 2 557899999999988899999751 0268
Q ss_pred EEEecCCCCC---cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE
Q psy14257 470 IERCSMSGEH---RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546 (841)
Q Consensus 470 I~r~~ldG~~---~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~ 546 (841)
|+++++++.. .+.+.. .....|.||++|. .++||++. .+.|.+++++|.....+.... .|..+++
T Consensus 217 i~~~~~~~~~l~~~~~~~~-----~~~~~pdgi~~d~-~G~lwv~~--~~gv~~~~~~g~~~~~~~~~~----~~~~~~f 284 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFAS-----VPDGLPDGFCVDR-GGWLWSSS--GTGVCVFDSDGQLLGHIPTPG----TASNCTF 284 (305)
T ss_dssp EEEEEEETTEEEEEEEEEC-----CSSSCCCSEEECT-TSCEEECC--SSEEEEECTTSCEEEEEECSS----CCCEEEE
T ss_pred EEEEEecCCCccCCeEEEE-----CCCCCCCeEEECC-CCCEEEec--CCcEEEECCCCCEEEEEECCC----ceeEEEE
Confidence 9999987643 222222 2346799999995 56788877 457999999998777665431 4777777
Q ss_pred --ecCeEEEEeCCCCeEEEEe
Q psy14257 547 --FENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 547 --~~~~lY~td~~~~~i~~~~ 565 (841)
.++.||++.. +.+++++
T Consensus 285 ~~d~~~L~it~~--~~l~~~~ 303 (305)
T 3dr2_A 285 DQAQQRLFITGG--PCLWMLP 303 (305)
T ss_dssp CTTSCEEEEEET--TEEEEEE
T ss_pred eCCCCEEEEEcC--CeEEEEE
Confidence 3467998874 4676664
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=141.82 Aligned_cols=239 Identities=13% Similarity=0.124 Sum_probs=161.1
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccc------cccCcCCCceEEEEccCCEEEEEeCC-
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPL------VTKNIQWPSSLVIDYNQDILYWCDSH- 369 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l------~~~~~~~P~glavD~~~~~lYwaD~~- 369 (841)
..|.|||+++.+ ++|+....|... ..+|.+.+ +|+. .++ ....+..|.||++|.. ++|||+|..
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~-----~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQP-----EMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCC-----SCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHH
T ss_pred CCcceEEECCCC-CEEEEeCCCCCC-----ceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCC
Confidence 589999999653 555543333210 14788777 6642 222 1235789999999987 789999986
Q ss_pred ----CCeEEEEEecCCccEEEEeeeeecCCCccccCC--CCCCccccccceEEEEec---CCCcEEEEccC-CceEEEEe
Q psy14257 370 ----LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN--CRPEDNLWIGKNLYWVES---NLDQIEVAKLS-GQFRRTLI 439 (841)
Q Consensus 370 ----~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~--~~~~avdw~~~~LY~tD~---~~~~I~v~~~~-G~~~~~l~ 439 (841)
.++|.+++++.......+.... ..+.+. ...+++|..++.+|++|. ..+.|.+++++ |+..+++-
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~-----~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPP-----PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCT-----TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred CcCCCCeEEEEECCCCeEEEEEECCh-----hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 6899999997554332222210 000000 112355655689999998 78899999986 55444331
Q ss_pred c-------------CC---------------CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC----CCC--c-----
Q psy14257 440 A-------------GD---------------MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS----GEH--R----- 480 (841)
Q Consensus 440 ~-------------~~---------------l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld----G~~--~----- 480 (841)
. .+ ...|.|||++|+...||+++.. ..+|++++.+ +.. .
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH--STSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS--CSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC--CCeEEEEEHHHhcCCCCChhhhhcc
Confidence 1 00 1358999999988899999987 5799998752 221 1
Q ss_pred -EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc-CCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCC
Q psy14257 481 -SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY-DGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWR 557 (841)
Q Consensus 481 -~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~-dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~ 557 (841)
..+. ....|.||++|. +++||+++...++|.++++ +|+ ..++.... .+..|.++++. +++||+++..
T Consensus 241 ~~~~g-------~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~-~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 241 IERYS-------EKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRA-YKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp CEEEE-------ECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTE-EEEEEECG-GGSCEEEEEECTTSCEEEEECC
T ss_pred eEecc-------cCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCC-EEEEEECC-ceecCCeeEECCCCcEEEEeCc
Confidence 1121 234799999996 5899999999999999999 775 44454432 46789999994 6899999976
Q ss_pred CCeE
Q psy14257 558 TNSV 561 (841)
Q Consensus 558 ~~~i 561 (841)
.+++
T Consensus 311 ~~~~ 314 (343)
T 2qe8_A 311 LHHS 314 (343)
T ss_dssp GGGS
T ss_pred cccc
Confidence 6544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-10 Score=126.53 Aligned_cols=276 Identities=13% Similarity=0.116 Sum_probs=182.6
Q ss_pred CCceeEEEcCCCCeEEEEecCCC----CCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSK----APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIH 519 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~----~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~ 519 (841)
..|.+++++|..++||++..+.. .++|+..+++.......+. ....|.++++++.+++||+++...+.|.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH------NDLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE------ESSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe------cCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 46899999999899999986521 4589999987554444433 1245899999998889999999889999
Q ss_pred EEEcCCCee-EEEEcCCCC------CCcceEEEEe--cCeEEEEeCC-CCeEEEEeccCCcceEEEecccCCCceeccCC
Q psy14257 520 TVTYDGKDH-HVVLSNHDS------LTHPFAIALF--ENHVYWTDWR-TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGV 589 (841)
Q Consensus 520 ~~~~dG~~~-~~i~~~~~~------l~~P~gla~~--~~~lY~td~~-~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp 589 (841)
.+++..... ..+...... ..+|.++++. ++++|++++. .+.|..++..+++....+......
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------- 186 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM-------- 186 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT--------
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc--------
Confidence 999975544 444322111 1137888884 4679999954 677888887766544433211000
Q ss_pred cccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEEEecCCCCccccceeecC--
Q psy14257 590 VKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRGVDLEHPYYHTIPTISIP-- 666 (841)
Q Consensus 590 ~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~~~l~~~~~~~~~~~~~~-- 666 (841)
|.+..+.+|+. +|+++ ..+.|..+++..... ...++..
T Consensus 187 -----------------------------~~~~~~s~dg~--------~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~ 227 (353)
T 3vgz_A 187 -----------------------------STGLALDSEGK--------RLYTTNADGELITIDTADNKI--LSRKKLLDD 227 (353)
T ss_dssp -----------------------------CCCCEEETTTT--------EEEEECTTSEEEEEETTTTEE--EEEEECCCS
T ss_pred -----------------------------cceEEECCCCC--------EEEEEcCCCeEEEEECCCCeE--EEEEEcCCC
Confidence 11122223321 22222 234555555543221 1122221
Q ss_pred -CCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEE
Q psy14257 667 -QVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAI 745 (841)
Q Consensus 667 -~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAv 745 (841)
....+.+++|++..+.+|+++...+.|+.+++.... ....+. ...|.++++
T Consensus 228 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--------------------------~~~~~~--~~~~~~~~~ 279 (353)
T 3vgz_A 228 GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN--------------------------ILAKVA--APESLAVLF 279 (353)
T ss_dssp SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--------------------------EEEEEE--CSSCCCEEE
T ss_pred CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--------------------------EEEEEE--cCCCceEEE
Confidence 123467899999999999999888999999986544 111222 345789999
Q ss_pred eecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecC
Q psy14257 746 DWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT 809 (841)
Q Consensus 746 D~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~ 809 (841)
++.++.||++ +...++|.++++........+.. -..|.+|+++|...+||++...
T Consensus 280 s~dg~~l~v~--~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 280 NPARNEAYVT--HRQAGKVSVIDAKSYKVVKTFDT-------PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ETTTTEEEEE--ETTTTEEEEEETTTTEEEEEEEC-------CSEEEEEEECTTSCEEEEEEEC
T ss_pred CCCCCEEEEE--ECCCCeEEEEECCCCeEEEEEec-------CCCCCeEEEcCCCCEEEEEEcc
Confidence 9999999999 45678999999865433333333 3589999999998899999876
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-11 Score=129.67 Aligned_cols=271 Identities=12% Similarity=0.081 Sum_probs=181.5
Q ss_pred ceeeecccccCCcceeEEEecC------CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVI------DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPS 323 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~------~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~ 323 (841)
.+.++.|+...+. ||+++.. .++|++.++.++. .... +.. ...|.++++++.++.+|+ ++.
T Consensus 42 ~~~~~~~s~dg~~--l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~-~~~-~~~~~~~~~s~dg~~l~v--~~~----- 108 (353)
T 3vgz_A 42 GAYEMAYSQQENA--LWLATSQSRKLDKGGVVYRLDPVTLE--VTQA-IHN-DLKPFGATINNTTQTLWF--GNT----- 108 (353)
T ss_dssp SEEEEEEETTTTE--EEEEECCCTTTEESEEEEEECTTTCC--EEEE-EEE-SSCCCSEEEETTTTEEEE--EET-----
T ss_pred CccceEECCCCCE--EEEEcCCCcCCCCCccEEEEcCCCCe--EEEE-Eec-CCCcceEEECCCCCEEEE--Eec-----
Confidence 4566777775555 9998865 5689888877654 2222 222 246999999987654554 432
Q ss_pred CCCCCCEEEEccCCCc-cccccccCcC--------CCceEEEEccCCEEEEEeC-CCCeEEEEEecCCccEEEEeeeeec
Q psy14257 324 NSSDGGIEKAGMHGEN-RSPLVTKNIQ--------WPSSLVIDYNQDILYWCDS-HLNTVESVRVDGSERTVSFNLEVLG 393 (841)
Q Consensus 324 ~~~~~~I~~~~~dG~~-~~~l~~~~~~--------~P~glavD~~~~~lYwaD~-~~~~I~~~~ldG~~~~~~~~~~~~~ 393 (841)
.++.|..++..... ...+....-. .|.++++++++++||+++. ..+.|+.+++........+... +
T Consensus 109 --~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~ 184 (353)
T 3vgz_A 109 --VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT--G 184 (353)
T ss_dssp --TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC--C
T ss_pred --CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC--C
Confidence 24588888875433 3333222111 2789999999999999994 5788999998765544333210 0
Q ss_pred CCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecC----CCCCceeEEEcCCCCeEEEEecCCCCCe
Q psy14257 394 SDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG----DMESPRAIALDPRFGLLFWTDWDSKAPR 469 (841)
Q Consensus 394 ~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~----~l~~P~giavd~~~g~Ly~td~~~~~~~ 469 (841)
. . ...++++..++.||+++. .+.|.++++........+.. ....|.+++++|.+++||+++.. .+.
T Consensus 185 ~-~------~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~ 254 (353)
T 3vgz_A 185 K-M------STGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAE 254 (353)
T ss_dssp T-T------CCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSE
T ss_pred C-c------cceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCE
Confidence 0 0 011244455678999876 67899998865443322222 23467889999999999999976 689
Q ss_pred EEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--
Q psy14257 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-- 547 (841)
Q Consensus 470 I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-- 547 (841)
|...++........+. +..|.++++++.+++||+++...+.|..+++........+.. -..|.++++.
T Consensus 255 v~~~d~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~d 324 (353)
T 3vgz_A 255 VLVVDTRNGNILAKVA-------APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSAD 324 (353)
T ss_dssp EEEEETTTCCEEEEEE-------CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTT
T ss_pred EEEEECCCCcEEEEEE-------cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCC
Confidence 9999986544333333 345789999998889999998889999999976544433333 2478999984
Q ss_pred cCeEEEEeCC
Q psy14257 548 ENHVYWTDWR 557 (841)
Q Consensus 548 ~~~lY~td~~ 557 (841)
+.+||++...
T Consensus 325 g~~l~v~~~~ 334 (353)
T 3vgz_A 325 GKTLYVSVKQ 334 (353)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEEcc
Confidence 3569998765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=131.90 Aligned_cols=261 Identities=13% Similarity=0.148 Sum_probs=166.4
Q ss_pred EEEEeccccceeeecccccCCcceeEEE-------ecCCCeEEEEEecCCcccceEEEEe----CCCCCccceEEeeecC
Q psy14257 241 VIALISSLKNTIALDFYYTPTANMVFWT-------DVIDDKIYNATLIGNSLSNIDVVVQ----TGLSTAEGLAVDWIGK 309 (841)
Q Consensus 241 ~~~l~~~~~~~~avd~~~~~~~~~lyw~-------d~~~~~I~~~~~~~~~~~~~~~~~~----~~l~~p~giavD~~~~ 309 (841)
...+..++..+.++.|+ .++. |||+ +...+.|++.++.++.+ ..+.. .....|.++++|+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~g~--l~~~~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~i~~~~~~g 83 (314)
T 1pjx_A 10 FTKVTEDIPGAEGPVFD-KNGD--FYIVAPEVEVNGKPAGEILRIDLKTGKK---TVICKPEVNGYGGIPAGCQCDRDAN 83 (314)
T ss_dssp CEEEECCCTTCEEEEEC-TTSC--EEEEETTCEETTEECCEEEEECTTTCCE---EEEECCEETTEECCEEEEEECSSSS
T ss_pred HhhhhccCCCccCceEC-CCCC--EEEEEeccccCCCCCCEEEEEeCCCCcE---EEEEecccCCCCCCCceEEEecCCC
Confidence 34556677778888888 4456 9999 88889999998765542 22221 0124689999997533
Q ss_pred ceeEEEeeecCCCCCCCCCCEEEEccCCCccccc-cc----cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccE
Q psy14257 310 NLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPL-VT----KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384 (841)
Q Consensus 310 ~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l-~~----~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~ 384 (841)
++|+ ++. ..+|.+++.+|+. ..+ .. .....|.+|++|++ ++||+++...+.+.. +
T Consensus 84 ~l~v--~~~--------~~~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~---~----- 143 (314)
T 1pjx_A 84 QLFV--ADM--------RLGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPA---D----- 143 (314)
T ss_dssp EEEE--EET--------TTEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTS---C-----
T ss_pred cEEE--EEC--------CCCEEEEeCCCCE-EEEEeccCCCccccCCcCEEECCC-CCEEEEecCcccccc---c-----
Confidence 4554 332 1379999888543 333 21 23457999999975 467777653210000 0
Q ss_pred EEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEc----CCCCeEEE
Q psy14257 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALD----PRFGLLFW 460 (841)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd----~~~g~Ly~ 460 (841)
+... .....+.|.+++.+|+..... ..+..|.+|+++ +.++.||+
T Consensus 144 -------------------------~~~~----~~~~~~~l~~~~~~g~~~~~~--~~~~~~~~i~~~~~~d~dg~~l~v 192 (314)
T 1pjx_A 144 -------------------------YTRS----MQEKFGSIYCFTTDGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIV 192 (314)
T ss_dssp -------------------------CCBT----TSSSCEEEEEECTTSCEEEEE--EEESSEEEEEEEECTTSCEEEEEE
T ss_pred -------------------------cccc----ccCCCCeEEEECCCCCEEEec--cCCCCcceEEEecccCCCCCEEEE
Confidence 0000 001123555565555433222 234679999999 88668999
Q ss_pred EecCCCCCeEEEecCCCCCc----EEEEEecccCCCC-CCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcC
Q psy14257 461 TDWDSKAPRIERCSMSGEHR----SVIVRVDLLTSRG-AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSN 534 (841)
Q Consensus 461 td~~~~~~~I~r~~ldG~~~----~~i~~~~~~~~~~-~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~ 534 (841)
++.. ..+|++.++++... ..+... .... ..|.+|++|. +++||+++...+.|.+++++ |.....+...
T Consensus 193 ~~~~--~~~i~~~~~~~~g~~~~~~~~~~~---~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 193 AETP--TKKLWSYDIKGPAKIENKKVWGHI---PGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp EETT--TTEEEEEEEEETTEEEEEEEEEEC---CCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred EECC--CCeEEEEECCCCCccccceEEEEC---CCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence 9976 68999998763221 122221 1122 5799999995 67999999888899999998 7665555322
Q ss_pred CCCCCcceEEEEe-cC-eEEEEeCCCCeEEEEecc
Q psy14257 535 HDSLTHPFAIALF-EN-HVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 535 ~~~l~~P~gla~~-~~-~lY~td~~~~~i~~~~~~ 567 (841)
...|.++++. ++ +||+++...+.|.+++..
T Consensus 267 ---~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 267 ---FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred ---CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 3578999984 34 499999888899988764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-11 Score=131.26 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=83.1
Q ss_pred CCCCceeEEEcCC---CCeEEEEecC-CCC----CeEEEecCCCC-----CcEEEEEecccCCCCCCceeEEEeccCCEE
Q psy14257 442 DMESPRAIALDPR---FGLLFWTDWD-SKA----PRIERCSMSGE-----HRSVIVRVDLLTSRGAWPNGLTLDYQLTRI 508 (841)
Q Consensus 442 ~l~~P~giavd~~---~g~Ly~td~~-~~~----~~I~r~~ldG~-----~~~~i~~~~~~~~~~~~P~glalD~~~~~L 508 (841)
+...|.|||++|. +|+||+++.. ... .+|.|+++++. ..++++.. +.......|++|++++ .++|
T Consensus 71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-~~~~~~h~~~~l~~~p-DG~L 148 (354)
T 3a9g_A 71 GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG-IPGAYIHNGGRIRFGP-DGML 148 (354)
T ss_dssp TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE-EECCSSCCCCCEEECT-TSCE
T ss_pred CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEc-CCCCCCcCCceEEECC-CCcE
Confidence 4567999999998 8999999852 112 68999998875 23344331 1123456799999997 5689
Q ss_pred EEEeCC-------------CCeEEEEEcCCC--------eeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCe
Q psy14257 509 YWIDAK-------------SDSIHTVTYDGK--------DHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNS 560 (841)
Q Consensus 509 Yw~d~~-------------~~~I~~~~~dG~--------~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~ 560 (841)
|++... .++|.+++++|+ ..+++..+ +.+|.||++. .+.||++|...+.
T Consensus 149 yvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G---~rnp~Gla~d~~~g~l~v~d~g~~~ 220 (354)
T 3a9g_A 149 YITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYG---HRNPQGIDWHRASGVMVATEHGPVG 220 (354)
T ss_dssp EEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEEC---CSCCCEEEECTTTCCEEEEECCSSS
T ss_pred EEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEc---cCCcceEEEeCCCCCEEEEecCCCC
Confidence 999632 368999999997 34444433 6789999996 4899999987654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-10 Score=124.77 Aligned_cols=267 Identities=15% Similarity=0.134 Sum_probs=166.0
Q ss_pred CCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc--cCcCCCceEEEEccCCEEEEEeCCCCe
Q psy14257 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT--KNIQWPSSLVIDYNQDILYWCDSHLNT 372 (841)
Q Consensus 295 ~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~--~~~~~P~glavD~~~~~lYwaD~~~~~ 372 (841)
....|.++|+++.++ +|+ ++.. ..++.|..+++++...+.+.. .....|.+|++++++++||+++...+.
T Consensus 38 ~~~~p~~~a~spdg~-l~~--~~~~-----~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~ 109 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYS--VDKE-----DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGT 109 (347)
T ss_dssp ECSCCCCEEECTTCE-EEE--EEEE-----TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTE
T ss_pred ccCCcceEEEccCCe-EEE--EEec-----CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCE
Confidence 346899999998664 554 3321 123588898887655444432 356789999999999999999998899
Q ss_pred EEEEEecCC-ccEEEEeeeeecCCCc--cccCCCCCCccccccceEEEEecCCCcEEEEccC--CceEEE--EecCCCCC
Q psy14257 373 VESVRVDGS-ERTVSFNLEVLGSDSR--VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS--GQFRRT--LIAGDMES 445 (841)
Q Consensus 373 I~~~~ldG~-~~~~~~~~~~~~~~~~--~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~--G~~~~~--l~~~~l~~ 445 (841)
|..++++.. ..+.+......+.... ...+....++++..++ ||+++...++|.+++++ |+.... +....-..
T Consensus 110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 188 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFG 188 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCC
T ss_pred EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCC
Confidence 999988532 2333322211111000 0000000123444445 99999999999999887 433221 11222347
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-CCc-EEEEEecccCC---CCCCceeEEEeccCCEEEEEeCCCCeEEE
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-EHR-SVIVRVDLLTS---RGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-~~~-~~i~~~~~~~~---~~~~P~glalD~~~~~LYw~d~~~~~I~~ 520 (841)
|++++++|+..+||+++.. ...|...+++. +.. +.+........ ....|.++++++++++||+++...+.|..
T Consensus 189 p~~~~~spdg~~l~v~~~~--~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 189 PRHLVFSPDGQYAFLAGEL--SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp EEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred CceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 9999999998889999876 56777776664 222 22222111111 12458899999988899999988889999
Q ss_pred EEcCCC-eeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEE--eccCCcce
Q psy14257 521 VTYDGK-DHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRA--NKWNGSDV 572 (841)
Q Consensus 521 ~~~dG~-~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~--~~~~g~~~ 572 (841)
++++.. ..+.+.........|.+|++. +.+||+++...+.|..+ +..+|+-.
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 987622 222222111112468899984 45799999887776544 65556533
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-12 Score=137.50 Aligned_cols=257 Identities=11% Similarity=0.073 Sum_probs=163.2
Q ss_pred EEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccc------ccCcCCCceEEEEcc---C
Q psy14257 290 VVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLV------TKNIQWPSSLVIDYN---Q 360 (841)
Q Consensus 290 ~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~------~~~~~~P~glavD~~---~ 360 (841)
.++..++..|.+|++++.++.+| +++. .++|.+.+.+|....++. ......|.||+++++ +
T Consensus 11 ~~va~~l~~P~~i~~~pdG~~l~--V~e~--------~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~ 80 (353)
T 2g8s_A 11 EVLQDKLDHPWALAFLPDNHGML--ITLR--------GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS 80 (353)
T ss_dssp EEEEEEESSEEEEEECSTTCCEE--EEET--------TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH
T ss_pred EEEECCCCCcEEEEEcCCCCEEE--EEeC--------CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCC
Confidence 34455789999999998653344 4543 369999988876433222 223456899999986 8
Q ss_pred CEEEEEeCC-------CCeEEEEEecCCc-----cEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC-------
Q psy14257 361 DILYWCDSH-------LNTVESVRVDGSE-----RTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN------- 421 (841)
Q Consensus 361 ~~lYwaD~~-------~~~I~~~~ldG~~-----~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~------- 421 (841)
++||+++.. ..+|.|+++++.. .++++..... ...+......++++. .++||++...
T Consensus 81 g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~---~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~ 156 (353)
T 2g8s_A 81 RRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPK---LSTGNHFGGRLVFDG-KGYLFIALGENNQRPTA 156 (353)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSC---CBSSSCCCCCEEECS-SSEEEEEECCTTCGGGG
T ss_pred CEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCC---CCCCcccCccEEECC-CCcEEEEECCCCCCCcc
Confidence 999999865 4689999997642 2222211000 000000111223333 3699999633
Q ss_pred ------CCcEEEEccCCce------------EEEEecCCCCCceeEEEcCCCCeEEEEecCCC-CCeEEEecCCCCC---
Q psy14257 422 ------LDQIEVAKLSGQF------------RRTLIAGDMESPRAIALDPRFGLLFWTDWDSK-APRIERCSMSGEH--- 479 (841)
Q Consensus 422 ------~~~I~v~~~~G~~------------~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~-~~~I~r~~ldG~~--- 479 (841)
.++|.+++.+|+. ...+...++.+|.+|++|+..|.||++|.+.. ...|.++...+.-
T Consensus 157 q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp 236 (353)
T 2g8s_A 157 QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWP 236 (353)
T ss_dssp GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTT
T ss_pred CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCC
Confidence 3689999999872 22234457889999999998899999997621 1134443221110
Q ss_pred ------------------------cEEEEEecccCCCCCCceeEEEec------cCCEEEEEeCCCCeEEEEEcCCCee-
Q psy14257 480 ------------------------RSVIVRVDLLTSRGAWPNGLTLDY------QLTRIYWIDAKSDSIHTVTYDGKDH- 528 (841)
Q Consensus 480 ------------------------~~~i~~~~~~~~~~~~P~glalD~------~~~~LYw~d~~~~~I~~~~~dG~~~- 528 (841)
...+... .....|.|+++.. ..+.||+++...++|.++++++...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~----~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 237 LATWGINYSGFKIPEAKGEIVAGTEQPVFYW----KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT 312 (353)
T ss_dssp TBCSSBCTTSSCCTTCCBSSCTTSCCCSEEE----SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE
T ss_pred CccCCCCCCCCccCcccCCCCCCccCCeEEe----CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe
Confidence 0000000 1124699999974 2489999999999999999987532
Q ss_pred --EEEEcCCCCCCcceEEEEe-cCeEEEE-eCCCCeEEEEec
Q psy14257 529 --HVVLSNHDSLTHPFAIALF-ENHVYWT-DWRTNSVIRANK 566 (841)
Q Consensus 529 --~~i~~~~~~l~~P~gla~~-~~~lY~t-d~~~~~i~~~~~ 566 (841)
..++. ....+|.+|++. +|.||++ |..+++|+|+.+
T Consensus 313 ~~~~~~~--~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 313 EDGRILT--DRGQRIRDVRTGPDGYLYVLTDESSGELLKVSP 352 (353)
T ss_dssp EEEEESG--GGCCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred eeEEccc--CCCCceeEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence 11222 124589999995 6899996 667889998863
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-10 Score=121.20 Aligned_cols=309 Identities=13% Similarity=0.133 Sum_probs=186.5
Q ss_pred ceEEEEecCCCcEEEEccC--CceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC--CCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLS--GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS--GEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~--G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld--G~~~~~i~~~~~ 488 (841)
+.||+++...+.|.+.+++ |.............|.+++++|.+.+||++... .+.|...+++ +...+.+...
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~-- 80 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAES-- 80 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEE--
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecC--CCeEEEEEecCCCCceeecccc--
Confidence 7789998888999999886 443322222234689999999998899999976 4677776665 4443333321
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEe
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~ 565 (841)
..-..|.++++++.++.||++....+.|..++++ |.....+... .....|.++++. +.+||+++...+.|..++
T Consensus 81 --~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 81 --ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp --ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred --ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 1123799999999888999999878889998883 3222222211 123467888885 357999997788888877
Q ss_pred ccC-CcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee--
Q psy14257 566 KWN-GSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-- 642 (841)
Q Consensus 566 ~~~-g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-- 642 (841)
..+ ++...+....... +.+ . . .. +..+.+| ..+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~-------~~~----------~---------~-~~-----~~~~~pd--------g~~l~~~~~ 197 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTT-------VEG----------A---------G-PR-----HMVFHPN--------EQYAYCVNE 197 (343)
T ss_dssp ECTTSCEEEEEEEEEEC-------STT----------C---------C-EE-----EEEECTT--------SSEEEEEET
T ss_pred ecCCCceeeeccccccc-------CCC----------C---------C-cc-----eEEECCC--------CCEEEEEeC
Confidence 655 4322211000000 000 0 0 00 0111222 1223333
Q ss_pred cCCeEEEEecCCCCccc--cce---eec--CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcc--cCceeeeeeeeeee
Q psy14257 643 RPREIRGVDLEHPYYHT--IPT---ISI--PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIV--GGQIQLVVDAVFEF 713 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~--~~~---~~~--~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~--g~~~~~~~~~~~~~ 713 (841)
....|..++++...... ... ++. .....+.+++|++..+.||++....+.|...+++ +...+
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~--------- 268 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS--------- 268 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE---------
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE---------
Confidence 23456666664321110 101 111 1123566899999999999999888999998887 32210
Q ss_pred ecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc--ceEEEEc--CCCCCCCcCC
Q psy14257 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE--YQTTILS--NESNDTSTLS 789 (841)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~--~~~~~~~--~~~~~~~~l~ 789 (841)
....+... ..|.+|++++.++.||++ ....+.|.+++++.. ..+.+.. . -.
T Consensus 269 ---------------~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~~~~v~v~~~d~~~g~~~~~~~~~~-------g~ 323 (343)
T 1ri6_A 269 ---------------KEGFQPTE-TQPRGFNVDHSGKYLIAA--GQKSHHISVYEIVGEQGLLHEKGRYAV-------GQ 323 (343)
T ss_dssp ---------------EEEEEECS-SSCCCEEECTTSSEEEEE--CTTTCEEEEEEEETTTTEEEEEEEEEC-------SS
T ss_pred ---------------EeeeecCC-CccceEEECCCCCEEEEe--cCCCCeEEEEEEcCCCceeeEcccccc-------CC
Confidence 11112222 349999999999999999 456789999977632 2222222 2 36
Q ss_pred CceEEEEeCCCCe
Q psy14257 790 KISSIAVWPVKGK 802 (841)
Q Consensus 790 ~p~~iavd~~~g~ 802 (841)
.|.+|++++..+.
T Consensus 324 ~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 324 GPMWVVVNAHEGG 336 (343)
T ss_dssp SCCEEEEEEEC--
T ss_pred CCeeEEEEcccCC
Confidence 8999999986543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-11 Score=128.56 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=146.1
Q ss_pred ccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCc
Q psy14257 345 TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQ 424 (841)
Q Consensus 345 ~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~ 424 (841)
...+..|.|+++|++++.|||++...+.|+++++++. .+.+... .....++ +++. .++||+++...+.
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~----~~~~~~l------~~~~-dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHP----SHHQNGH------CLNK-QGHLIACSHGLRR 91 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESS----CSSEEEE------EECT-TCCEEEEETTTTE
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECC----CCCccee------eECC-CCcEEEEecCCCe
Confidence 3567889999999999999999999999999999987 4443211 0111111 2222 3789999988889
Q ss_pred EEEEcc-CCceEEEEec---CCCCCceeEEEcCCCCeEEEEec--CC-------------CCCeEEEecCCCCCcEEEEE
Q psy14257 425 IEVAKL-SGQFRRTLIA---GDMESPRAIALDPRFGLLFWTDW--DS-------------KAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 425 I~v~~~-~G~~~~~l~~---~~l~~P~giavd~~~g~Ly~td~--~~-------------~~~~I~r~~ldG~~~~~i~~ 485 (841)
|.++++ +|+....+.. ..+..|++|++|+. |.||+||. +. ....|++++.+|... .+ .
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~-~ 168 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLS-AP-I 168 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEE-EE-E
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCCCCEE-Ee-e
Confidence 999998 6665433221 12467899999985 88999874 10 135899999885432 22 3
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCe---eEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCC
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKD---HHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTN 559 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~---~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~ 559 (841)
..+..|+|+++++.++.| |++...++|++++++ |.. .+.+ .. ....|.+|++. +|+||++. .+
T Consensus 169 -----~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~--~~~~p~~i~~d~~G~l~v~~--~~ 237 (296)
T 3e5z_A 169 -----RDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TV--EPGKTDGLRVDAGGLIWASA--GD 237 (296)
T ss_dssp -----CCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CC--SSSCCCSEEEBTTSCEEEEE--TT
T ss_pred -----cCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eC--CCCCCCeEEECCCCCEEEEc--CC
Confidence 467889999999877777 999999999999985 443 3333 22 35678999995 58999998 67
Q ss_pred eEEEEeccCCcceEEE
Q psy14257 560 SVIRANKWNGSDVTLI 575 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i 575 (841)
.|.++++. |+....+
T Consensus 238 ~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 238 GVHVLTPD-GDELGRV 252 (296)
T ss_dssp EEEEECTT-SCEEEEE
T ss_pred eEEEECCC-CCEEEEE
Confidence 89999875 5544433
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-10 Score=120.45 Aligned_cols=285 Identities=12% Similarity=0.087 Sum_probs=180.0
Q ss_pred eeEEEecCCCeEEEEEecC-CcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC--CCcc
Q psy14257 264 MVFWTDVIDDKIYNATLIG-NSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH--GENR 340 (841)
Q Consensus 264 ~lyw~d~~~~~I~~~~~~~-~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d--G~~~ 340 (841)
.||+++...+.|...+++. +.. ...........|.++++++.++.+|+ +.. .++.|..++++ +...
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~--~~~-------~~~~v~~~~~~~~~~~~ 74 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGAL--TLTQVVDVPGQVQPMVVSPDKRYLYV--GVR-------PEFRVLAYRIAPDDGAL 74 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCE--EEEEEEECSSCCCCEEECTTSSEEEE--EET-------TTTEEEEEEECTTTCCE
T ss_pred EEEEeCCCCCeEEEEEECCCCcE--EEeeeEecCCCCceEEECCCCCEEEE--eec-------CCCeEEEEEecCCCCce
Confidence 4888888888998888753 221 11111223457999999987654554 332 23578887776 4333
Q ss_pred ccccc-cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec-CCccEEEEeeeeecCCCccccCCCCCCccccccceEEEE
Q psy14257 341 SPLVT-KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD-GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWV 418 (841)
Q Consensus 341 ~~l~~-~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld-G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~t 418 (841)
+.+.. ..-..|.+++++++++.||++....+.|..++++ |...+.+........ ...++++..++.||++
T Consensus 75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 75 TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG--------CHSANISPDNRTLWVP 146 (343)
T ss_dssp EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT--------BCCCEECTTSSEEEEE
T ss_pred eeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCC--------ceEEEECCCCCEEEEe
Confidence 33321 1233899999999999999999988999998885 322222222111110 1122344456789999
Q ss_pred ecCCCcEEEEccCC--ceEE----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC--CCcEEEEEecccC
Q psy14257 419 ESNLDQIEVAKLSG--QFRR----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG--EHRSVIVRVDLLT 490 (841)
Q Consensus 419 D~~~~~I~v~~~~G--~~~~----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG--~~~~~i~~~~~~~ 490 (841)
+...+.|.+++++. +... .+....-..|++++++|...+||++... ...|...+++. .....+.......
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~--~~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--NSSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEeeccccC
Confidence 97888999998864 3322 1222223579999999998889999866 57888888753 2222221111011
Q ss_pred ---CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEE
Q psy14257 491 ---SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIR 563 (841)
Q Consensus 491 ---~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~ 563 (841)
.....|.++++++.++.||++....+.|..++++ +...+.+..... ...|.++++. +.+||++....+.|..
T Consensus 225 ~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v 303 (343)
T 1ri6_A 225 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISV 303 (343)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred ccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-CCccceEEECCCCCEEEEecCCCCeEEE
Confidence 1234677899999888999999888999999987 433333322111 1248888884 4579999877777654
Q ss_pred E--eccCCc
Q psy14257 564 A--NKWNGS 570 (841)
Q Consensus 564 ~--~~~~g~ 570 (841)
. +..+|+
T Consensus 304 ~~~d~~~g~ 312 (343)
T 1ri6_A 304 YEIVGEQGL 312 (343)
T ss_dssp EEEETTTTE
T ss_pred EEEcCCCce
Confidence 4 555554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-11 Score=126.66 Aligned_cols=274 Identities=10% Similarity=0.010 Sum_probs=179.9
Q ss_pred eeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccc
Q psy14257 264 MVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPL 343 (841)
Q Consensus 264 ~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l 343 (841)
.+|+++...+.|...++..+. ....+..+...| ++++++.++.+|+ +.. .+++|.+++++.......
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~-~~~~s~dg~~l~~--~~~-------~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLE---ILNQITLGYDFV-DTAITSDCSNVVV--TSD-------FCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCC---EEEEEECCCCEE-EEEECSSSCEEEE--EES-------TTCEEEEEECSSSSCEEE
T ss_pred EEEEEecCCCeEEEEeCcccc---eeeeEEccCCcc-eEEEcCCCCEEEE--EeC-------CCCeEEEEECCCCceeEE
Confidence 499999999999999887664 233444556667 9999987654444 432 245899999876544122
Q ss_pred cccCcCCCce-EEEEccCCEEEEEeCCCC--eEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEec
Q psy14257 344 VTKNIQWPSS-LVIDYNQDILYWCDSHLN--TVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES 420 (841)
Q Consensus 344 ~~~~~~~P~g-lavD~~~~~lYwaD~~~~--~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~ 420 (841)
....-..|.. +++++++++||..+...+ .|..++++.......+... ..+ ..++++..++.||+++.
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~--------~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDA--------VGIAISPNGNGLILIDR 147 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTE--------EEEEECTTSSCEEEEEE
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCc--------cceEECCCCCEEEEEec
Confidence 2234456788 999999999994443434 8999999766544332211 000 01233444567999998
Q ss_pred CCCc-EEEEccCC--ceE---EEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc-EEEEEecccCCCC
Q psy14257 421 NLDQ-IEVAKLSG--QFR---RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR-SVIVRVDLLTSRG 493 (841)
Q Consensus 421 ~~~~-I~v~~~~G--~~~---~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~-~~i~~~~~~~~~~ 493 (841)
..+. |.+++++. ... ...+. .-..|.+++++|...+||++... .+.|...+++.... +.+... ..-
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~d~~~~~~~~~~~~~----~~~ 220 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFIS-GGTRPFNITFTPDGNFAFVANLI--GNSIGILETQNPENITLLNAV----GTN 220 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEEC-SSSSEEEEEECTTSSEEEEEETT--TTEEEEEECSSTTSCEEEEEE----ECS
T ss_pred CCCceEEEEEECCCCcEeecCCcccc-CCCCccceEECCCCCEEEEEeCC--CCeEEEEECCCCcccceeeec----cCC
Confidence 8788 88877763 221 12222 23579999999998889999977 67899988864333 212221 123
Q ss_pred CCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCC---CCcc----eEEEE--ecCeEEEEeCCCCeEEEE
Q psy14257 494 AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDS---LTHP----FAIAL--FENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~---l~~P----~gla~--~~~~lY~td~~~~~i~~~ 564 (841)
..|.++++++.+++||++....+.|..+++.....+.+...... -..| .++++ .+.+||++....+.|..+
T Consensus 221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 67899999998888999998888999999986554332211000 0111 23566 456799999888888777
Q ss_pred ecc
Q psy14257 565 NKW 567 (841)
Q Consensus 565 ~~~ 567 (841)
+..
T Consensus 301 d~~ 303 (331)
T 3u4y_A 301 TIS 303 (331)
T ss_dssp ETT
T ss_pred Eec
Confidence 753
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-11 Score=129.19 Aligned_cols=259 Identities=11% Similarity=0.121 Sum_probs=165.4
Q ss_pred cEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEE---EEeCCCCCccceEEeee---cCceeE
Q psy14257 240 NVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDV---VVQTGLSTAEGLAVDWI---GKNLYM 313 (841)
Q Consensus 240 ~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~---~~~~~l~~p~giavD~~---~~~~y~ 313 (841)
.++.++.++..+.+|.|... +. ||+++...++|++++.+++....... +...+...|.|||++|. .+.+|+
T Consensus 23 ~~~~va~gL~~P~~ia~~pd-G~--llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPG-GD--LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp EEEEEECCCSSEEEEEECTT-SC--EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred eeEEeecCCCCceEEEEcCC-Cc--EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 56678889999999999875 56 99999878999998765443111110 12345678999999873 567787
Q ss_pred EEeeecCCCCCCCCCCEEEEccCCCc--------cccccc----cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCC
Q psy14257 314 FWAFWSLSPSNSSDGGIEKAGMHGEN--------RSPLVT----KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS 381 (841)
Q Consensus 314 ~~td~~~~~~~~~~~~I~~~~~dG~~--------~~~l~~----~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~ 381 (841)
+++.. ..++|.|+..++.. .++|+. ...+.+..|+++++ ++||++-....... .
T Consensus 100 ~yt~~-------~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpD-G~Lyvt~Gd~~~~~----~-- 165 (347)
T 3das_A 100 YFTSA-------SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPD-KMLYAGTGESGDTG----L-- 165 (347)
T ss_dssp EEECS-------SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTT-SCEEEECBCTTCGG----G--
T ss_pred EEecC-------CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCC-CCEEEEECCCCCCc----c--
Confidence 77643 23589999887621 222322 24566778999875 47888743211000 0
Q ss_pred ccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCc--------eEEEEecCCCCCceeEEEcC
Q psy14257 382 ERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQ--------FRRTLIAGDMESPRAIALDP 453 (841)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~--------~~~~l~~~~l~~P~giavd~ 453 (841)
+ ..+ +...++|.+++.+|+ .. .+...++.+|.||++||
T Consensus 166 -------------------------~-----qd~---~~~~G~IlRi~~dG~ip~~nPf~~~-~i~a~G~RNp~Gla~dp 211 (347)
T 3das_A 166 -------------------------S-----QDR---KSLGGKILRMTPDGEPAPGNPFPGS-PVYSYGHRNVQGLAWDD 211 (347)
T ss_dssp -------------------------T-----TCT---TCSTTCEEEECTTSSBCTTCSSTTC-CEEEBCCSBCCEEEECT
T ss_pred -------------------------c-----cCC---CCCCCEEEEEeCCCCccCCCCCCCC-eEEeeCCCCcceEEECC
Confidence 0 000 123466777777765 22 24455789999999999
Q ss_pred CCCeEEEEecCCC-CCeEEEecCCCCCc---------------EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCe
Q psy14257 454 RFGLLFWTDWDSK-APRIERCSMSGEHR---------------SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDS 517 (841)
Q Consensus 454 ~~g~Ly~td~~~~-~~~I~r~~ldG~~~---------------~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~ 517 (841)
.|.||++|.+.. .-.|.++.. |.+. .-+... ......|.||++- .+.+|.+.....+
T Consensus 212 -~G~L~~~d~g~~~~deln~i~~-G~nyGwP~~~g~~~~~~~~~P~~~~---~~~~~ap~G~~~~--~g~~~~~~l~~~~ 284 (347)
T 3das_A 212 -KQRLFASEFGQDTWDELNAIKP-GDNYGWPEAEGKGGGSGFHDPVAQW---STDEASPSGIAYA--EGSVWMAGLRGER 284 (347)
T ss_dssp -TCCEEEEECCSSSCEEEEEECT-TCBCCTTTCCSSCCCTTCCCCSEEE---CTTTCCEEEEEEE--TTEEEEEESTTCS
T ss_pred -CCCEEEEecCCCCCceeeEEcC-CCEecCCcccCCCCCccccCCcEec---CCCCCCCcceEEE--cCceeeccccCCE
Confidence 599999997631 124555442 2211 001110 0112478999996 6899999999999
Q ss_pred EEEEEcCCCee----EEEEcCCCCCCcceEEEE-ecCeEEEEeCCC
Q psy14257 518 IHTVTYDGKDH----HVVLSNHDSLTHPFAIAL-FENHVYWTDWRT 558 (841)
Q Consensus 518 I~~~~~dG~~~----~~i~~~~~~l~~P~gla~-~~~~lY~td~~~ 558 (841)
|.++.+++... +.++.. ...+|.+|++ .+|.||+++...
T Consensus 285 l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~td~~ 328 (347)
T 3das_A 285 LWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVTSNT 328 (347)
T ss_dssp EEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEECTT
T ss_pred EEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEEcCC
Confidence 99999987532 334432 3568999998 468999996543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-10 Score=124.97 Aligned_cols=263 Identities=14% Similarity=0.149 Sum_probs=162.1
Q ss_pred cEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeec
Q psy14257 240 NVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWS 319 (841)
Q Consensus 240 ~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~ 319 (841)
.+..+......+.++.|+.. ++ |||++...+.|++.+++++. ...+.......|.+|++|+.+ ++|+ +...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-g~--l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~i~~~~dg-~l~v--~~~~ 106 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQ-GQ--LFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHKDG-RLFV--CYLG 106 (333)
T ss_dssp EEEEEESSCCCEEEEEECTT-SC--EEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECTTS-CEEE--EECT
T ss_pred eeEEEeccCccccCcEECCC-CC--EEEEECCCCEEEEEeCCCCc---EEEEeeCCCCCcceEEECCCC-cEEE--EeCC
Confidence 33444445555677778753 55 99999999999999887664 233332334579999998653 4444 3322
Q ss_pred CCCCCCCCCCEEEEccCCCccccccc--cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCc
Q psy14257 320 LSPSNSSDGGIEKAGMHGENRSPLVT--KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSR 397 (841)
Q Consensus 320 ~~~~~~~~~~I~~~~~dG~~~~~l~~--~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~ 397 (841)
. ....++|.+++.++.....+.. .....|++|++|++ ++||+++.....
T Consensus 107 ~---~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~------------------------- 157 (333)
T 2dg1_A 107 D---FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYS------------------------- 157 (333)
T ss_dssp T---SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT-SCEEEEECCCBT-------------------------
T ss_pred C---CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC-CCEEEEeccccc-------------------------
Confidence 1 0112579999988776553332 23456888888875 456666542100
Q ss_pred cccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-
Q psy14257 398 VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS- 476 (841)
Q Consensus 398 ~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld- 476 (841)
....+.|++++.++...+.+. ..+..|.+|+++|.+.+||+++.. ..+|++.+++
T Consensus 158 ---------------------~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~--~~~i~~~d~~~ 213 (333)
T 2dg1_A 158 ---------------------TNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETT--ANRLHRIALED 213 (333)
T ss_dssp ---------------------TBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECT
T ss_pred ---------------------cCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCC--CCeEEEEEecC
Confidence 000234444444443222222 234579999999987789999876 5789999984
Q ss_pred -CCCcEEEEEecc-cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC---CCCCcceEEEEec--C
Q psy14257 477 -GEHRSVIVRVDL-LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH---DSLTHPFAIALFE--N 549 (841)
Q Consensus 477 -G~~~~~i~~~~~-~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~---~~l~~P~gla~~~--~ 549 (841)
|.....+..... .......|.+|++|. +++||+++...+.|.+++++|.....+.... +.+..|.++++.. +
T Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp TSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred CCcCcccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCC
Confidence 443332211000 001225799999995 5789999987889999999887766664321 1122688898843 5
Q ss_pred eEEEEeCCC-----CeEEEEe
Q psy14257 550 HVYWTDWRT-----NSVIRAN 565 (841)
Q Consensus 550 ~lY~td~~~-----~~i~~~~ 565 (841)
+||++.... +.|++++
T Consensus 293 ~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 293 QLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp EEEEEEECGGGTCCEEEEEEE
T ss_pred EEEEEeCccCCCCCceEEEEe
Confidence 899887653 3555554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-11 Score=133.54 Aligned_cols=208 Identities=16% Similarity=0.195 Sum_probs=140.1
Q ss_pred cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecC--CCccccCCCCCCccccc---cceEEEE
Q psy14257 344 VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGS--DSRVGIPNCRPEDNLWI---GKNLYWV 418 (841)
Q Consensus 344 ~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~--~~~~~i~~~~~~avdw~---~~~LY~t 418 (841)
+...+..|.+|++++++ +||+++.. ++|++++ +|. .+.+....+... ....| ++++.. ++.||++
T Consensus 26 va~~l~~P~~ia~~pdG-~l~V~e~~-g~I~~i~-~g~-~~~~~~~~v~~~g~~~p~g------ia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 26 VVGGLEVPWALAFLPDG-GMLIAERP-GRIRLFR-EGR-LSTYAELSVYHRGESGLLG------LALHPRFPQEPYVYAY 95 (352)
T ss_dssp EECCCSCEEEEEECTTS-CEEEEETT-TEEEEEE-TTE-EEEEEECCCCCSTTCSEEE------EEECTTTTTSCEEEEE
T ss_pred EECCCCCceEEEEcCCC-eEEEEeCC-CeEEEEE-CCC-ccEeecceEeecCCCCcee------EEECCCCCCCCEEEEE
Confidence 34568899999999875 59999987 9999999 664 333433321111 11122 233333 5799999
Q ss_pred ecCC-----CcEEEEccCCc---eEEEEec------CCCCCceeEEEcCCCCeEEEEecCC-----------CCCeEEEe
Q psy14257 419 ESNL-----DQIEVAKLSGQ---FRRTLIA------GDMESPRAIALDPRFGLLFWTDWDS-----------KAPRIERC 473 (841)
Q Consensus 419 D~~~-----~~I~v~~~~G~---~~~~l~~------~~l~~P~giavd~~~g~Ly~td~~~-----------~~~~I~r~ 473 (841)
+... ++|.++++++. ..++++. .....|.+|+++|+ |+||+++... ..++|.|+
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri 174 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD-GMLYVTTGEVYERELAQDLASLGGKILRL 174 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT-SCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC-CCEEEEECCCCCCccccCCCCCceEEEEE
Confidence 9754 78999998864 2333332 23567899999985 7999997421 13689999
Q ss_pred cCCCC-------------CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCe--------EEEEEcCCC------
Q psy14257 474 SMSGE-------------HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDS--------IHTVTYDGK------ 526 (841)
Q Consensus 474 ~ldG~-------------~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~--------I~~~~~dG~------ 526 (841)
+.||+ ..+++. ..+..|.||++|+.+++||++|...+. |..+...+.
T Consensus 175 ~~dG~~p~~npf~~~~~~~~~i~a------~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~ 248 (352)
T 2ism_A 175 TPEGEPAPGNPFLGRRGARPEVYS------LGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRV 248 (352)
T ss_dssp CTTSSBCTTCTTTTCTTSCTTEEE------ECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTC
T ss_pred cCCCCCCCCCcccCCCCCCccEEE------EcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcc
Confidence 99983 334443 368889999999878999999987765 555543220
Q ss_pred --------eeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCC
Q psy14257 527 --------DHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 527 --------~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g 569 (841)
...-+..- .....|.|++++++.+|++++..++|.++....+
T Consensus 249 ~g~~~~~~~~~p~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 249 VGRGNDPRYRDPLYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp CSCCCCTTSCCCSEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEE
T ss_pred cCCCCCCCCcCCeEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCC
Confidence 00000100 0123689999999999999999999999976543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-11 Score=128.26 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=143.3
Q ss_pred cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC
Q psy14257 344 VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD 423 (841)
Q Consensus 344 ~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~ 423 (841)
+...+.++.|++++++++.|||+|...++|++++.+|.. +++.... ....+ +++|. .++||+++...+
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~~~~----~~~~g------l~~d~-dG~l~v~~~~~~ 107 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLLDAT----AFTNG------NAVDA-QQRLVHCEHGRR 107 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEEESC----SCEEE------EEECT-TSCEEEEETTTT
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEeCCC----Cccce------eeECC-CCCEEEEECCCC
Confidence 345788999999999999999999999999999997653 3322111 11111 12232 277999998888
Q ss_pred cEEEEccCCceEEEEec---CCCCCceeEEEcCCCCeEEEEec--CC-------------CCCeEEEecCCCCCcEEEEE
Q psy14257 424 QIEVAKLSGQFRRTLIA---GDMESPRAIALDPRFGLLFWTDW--DS-------------KAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 424 ~I~v~~~~G~~~~~l~~---~~l~~P~giavd~~~g~Ly~td~--~~-------------~~~~I~r~~ldG~~~~~i~~ 485 (841)
+|.+++.+|+....... ..+..|++|++++. |.||+||. +. ....|++++.++...+.+..
T Consensus 108 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~ 186 (305)
T 3dr2_A 108 AITRSDADGQAHLLVGRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD 186 (305)
T ss_dssp EEEEECTTSCEEEEECEETTEECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE
T ss_pred EEEEECCCCCEEEEEeccCCCccCCCCCEEECCC-CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec
Confidence 99999999875433211 12467999999985 88999874 11 13579999985333333323
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCC-----CeEEEEEcCCCe---eEEEEcCCCCCCcceEEEEe-cCeEEEEeC
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKS-----DSIHTVTYDGKD---HHVVLSNHDSLTHPFAIALF-ENHVYWTDW 556 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~-----~~I~~~~~dG~~---~~~i~~~~~~l~~P~gla~~-~~~lY~td~ 556 (841)
+..|+||+++++++.|||++... +.|+++++++.. .+.+... ....|.||++. +++||++.
T Consensus 187 -------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~lwv~~- 256 (305)
T 3dr2_A 187 -------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWLWSSS- 256 (305)
T ss_dssp -------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCEEECC-
T ss_pred -------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCEEEec-
Confidence 45799999999888999999873 799999988643 2333332 13568999995 58888887
Q ss_pred CCCeEEEEeccCCcceEE
Q psy14257 557 RTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 557 ~~~~i~~~~~~~g~~~~~ 574 (841)
.+.|.++++ .|+....
T Consensus 257 -~~gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 257 -GTGVCVFDS-DGQLLGH 272 (305)
T ss_dssp -SSEEEEECT-TSCEEEE
T ss_pred -CCcEEEECC-CCCEEEE
Confidence 346888887 4554433
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=127.01 Aligned_cols=277 Identities=16% Similarity=0.137 Sum_probs=166.9
Q ss_pred CCceeEEEcCCCCeEEEEec--CCCCCeEEEecCCCCCcEEEEEe-cccCCCCCCceeEEEeccCCEEEEEeCC-----C
Q psy14257 444 ESPRAIALDPRFGLLFWTDW--DSKAPRIERCSMSGEHRSVIVRV-DLLTSRGAWPNGLTLDYQLTRIYWIDAK-----S 515 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~--~~~~~~I~r~~ldG~~~~~i~~~-~~~~~~~~~P~glalD~~~~~LYw~d~~-----~ 515 (841)
..|.+|++++. |.+|++.. .....+|..++ +|.. ..+... ......+..|.||++|+ .++|||+|.. .
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSC
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCC
Confidence 68999999985 88999963 21124888887 5531 111000 00113578999999996 4899999986 5
Q ss_pred CeEEEEEcCCCe-eEEEEcCC---CCCCcceEEEEe--cCeEEEEeC---CCCeEEEEeccCCcceEEEecccCCCceec
Q psy14257 516 DSIHTVTYDGKD-HHVVLSNH---DSLTHPFAIALF--ENHVYWTDW---RTNSVIRANKWNGSDVTLIQRTLTQPFIYV 586 (841)
Q Consensus 516 ~~I~~~~~dG~~-~~~i~~~~---~~l~~P~gla~~--~~~lY~td~---~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h 586 (841)
.+|.+++++... .+++.... .....|.+|++. ++++|++|. ..+.|+.++..+|+...++.....
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~------ 166 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG------ 166 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT------
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc------
Confidence 799999997544 44443211 112357899997 579999998 788999898776664433211000
Q ss_pred cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecC
Q psy14257 587 NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIP 666 (841)
Q Consensus 587 ~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 666 (841)
. . |++..+..++.. |........+. . .
T Consensus 167 ~---------~---------------------~~~~~~~~~g~~-------~~~~~~~g~~~-------------~--~- 193 (343)
T 2qe8_A 167 I---------A---------------------PEDIDLVIDGVP-------VQIGQPDGTVI-------------R--P- 193 (343)
T ss_dssp T---------S---------------------CCSCCCEETTEE-------CBEECTTSCEE-------------C--C-
T ss_pred c---------c---------------------ccccceeECCEE-------EEeccCCCcee-------------c--e-
Confidence 0 0 000000111110 00000001110 0 0
Q ss_pred CCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEe
Q psy14257 667 QVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAID 746 (841)
Q Consensus 667 ~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD 746 (841)
...+.+|++++..+.||+++...++|++++.+.-... .++... +. ...... .....|.|||+|
T Consensus 194 -~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~------------~~~~~~-~~-~~~~~~--g~~g~pdgia~d 256 (343)
T 2qe8_A 194 -HLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL------------QLTDAE-LG-SKIERY--SEKPICDGISID 256 (343)
T ss_dssp -CCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT------------TCCHHH-HH-TTCEEE--EECCSCSCEEEC
T ss_pred -ecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC------------CCChhh-hh-cceEec--ccCCCCceEEEC
Confidence 0235689999999999999988889999975421000 000000 00 000111 123479999999
Q ss_pred ecCCcEEEEecCCCCCeEEEEec-CCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCC
Q psy14257 747 WIAQNMFIAVSSPTQSKIVVCNL-EGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 747 ~~~~~LYw~~~~~~~~~I~v~~l-~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~ 810 (841)
.. ++||+++ ...++|.+++. +|+... ++.. + .+..|.+|++++. |.||+++...
T Consensus 257 ~~-G~l~va~--~~~~~V~~~d~~~G~~~~-~~~~----~-~~~~p~~va~~~~-g~l~v~~~~~ 311 (343)
T 2qe8_A 257 KD-HNIYVGD--LAHSAIGVITSADRAYKL-LVTD----E-KLSWTDSFNFGSD-GYLYFDCNQL 311 (343)
T ss_dssp TT-CCEEEEE--GGGTEEEEEETTTTEEEE-EEEC----G-GGSCEEEEEECTT-SCEEEEECCG
T ss_pred CC-CCEEEEc--cCCCeEEEEECCCCCEEE-EEEC----C-ceecCCeeEECCC-CcEEEEeCcc
Confidence 86 6899994 57899999999 887543 4432 0 2789999999985 8999998754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-09 Score=114.15 Aligned_cols=291 Identities=10% Similarity=0.023 Sum_probs=190.4
Q ss_pred cceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc-EEEEEecccC
Q psy14257 412 GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR-SVIVRVDLLT 490 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~-~~i~~~~~~~ 490 (841)
.+.+|+++...+.|.+++++.......+..+...| +++++|.+.+||++..+ ..+|+..+++.... .....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~----- 80 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQ----- 80 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST--TCEEEEEECSSSSCEEEEEE-----
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC--CCeEEEEECCCCceeEEecc-----
Confidence 48899999999999999987544433334455667 99999998889999986 67999999976554 33333
Q ss_pred CCCCCcee-EEEeccCCEEEEEeCCCC--eEEEEEcCCCeeEEEEcCCCCCCcceEEEEec--CeEEEEeCCCCe-EEEE
Q psy14257 491 SRGAWPNG-LTLDYQLTRIYWIDAKSD--SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE--NHVYWTDWRTNS-VIRA 564 (841)
Q Consensus 491 ~~~~~P~g-lalD~~~~~LYw~d~~~~--~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~--~~lY~td~~~~~-i~~~ 564 (841)
....|.. +++++.+++||......+ .|..++++.......+.. -..|.++++.. .+||+++...+. |...
T Consensus 81 -~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 81 -EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---PYDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp -ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC---CTTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred -cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC---CCCccceEECCCCCEEEEEecCCCceEEEE
Confidence 2356787 999998889994444334 899999986655444433 24688899853 369998876554 4433
Q ss_pred eccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecC
Q psy14257 565 NKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRP 644 (841)
Q Consensus 565 ~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~ 644 (841)
+.... +. +....
T Consensus 157 ~~~~~----------------------------------------------------------g~---------~~~~~- 168 (331)
T 3u4y_A 157 KIDAD----------------------------------------------------------GV---------LFDTG- 168 (331)
T ss_dssp EECTT----------------------------------------------------------CC---------EEEEE-
T ss_pred EECCC----------------------------------------------------------Cc---------EeecC-
Confidence 32100 00 00000
Q ss_pred CeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccc
Q psy14257 645 REIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSI 724 (841)
Q Consensus 645 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 724 (841)
...+ .....+..++|+|..+.+|+++...+.|..+++.......
T Consensus 169 --~~~~---------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~------------------- 212 (331)
T 3u4y_A 169 --QEFI---------------SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT------------------- 212 (331)
T ss_dssp --EEEE---------------CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-------------------
T ss_pred --Cccc---------------cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-------------------
Confidence 0000 0112357889999999999999888999999887544100
Q ss_pred cCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEE---EcCCCCCCCcCCCceEEEEeCCCC
Q psy14257 725 VGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTI---LSNESNDTSTLSKISSIAVWPVKG 801 (841)
Q Consensus 725 ~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~---~~~~~~~~~~l~~p~~iavd~~~g 801 (841)
....+. .-..|.+|++++.++.||++ ....+.|.++++.....+.+ ......+........+|++.|...
T Consensus 213 ----~~~~~~-~~~~~~~~~~spdg~~l~v~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 213 ----LLNAVG-TNNLPGTIVVSRDGSTVYVL--TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp ----EEEEEE-CSSCCCCEEECTTSSEEEEE--CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred ----eeeecc-CCCCCceEEECCCCCEEEEE--EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 011222 23679999999999999999 45677899999875433222 111000111122335689999999
Q ss_pred eEEEEecCCCcceEEEEecCCCceEE
Q psy14257 802 KMFWSNVTKQVVTIEMAFMDGTKRET 827 (841)
Q Consensus 802 ~lyw~d~~~~~~~I~~~~~dG~~~~~ 827 (841)
+||.+....+ +|...++++.....
T Consensus 286 ~l~v~~~~~~--~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 286 KLFISANISR--ELKVFTISGKVVGY 309 (331)
T ss_dssp EEEEEETTTT--EEEEEETTSCEEEE
T ss_pred EEEEecCCCC--cEEEEEecCCcccc
Confidence 9999987663 68888887755433
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-10 Score=123.63 Aligned_cols=267 Identities=15% Similarity=0.117 Sum_probs=164.2
Q ss_pred cccccccccEEE--EeccccceeeecccccCCcceeEEEecC--CCeEEEEEecCCcccceEEEEeCCCCCccceEEeee
Q psy14257 232 RGVDLRTFNVIA--LISSLKNTIALDFYYTPTANMVFWTDVI--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWI 307 (841)
Q Consensus 232 ~~~~~~~~~~~~--l~~~~~~~~avd~~~~~~~~~lyw~d~~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~ 307 (841)
+.++........ .......+.++.|... ++ ||+++.. .+.|++.+++++....... +......|.++++++.
T Consensus 21 ~~~d~~tg~~~~~~~~~~~~~p~~~a~spd-g~--l~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~~~~~p~~~a~spd 96 (347)
T 3hfq_A 21 GTLDTTAKTLTNDGLLAATQNPTYLALSAK-DC--LYSVDKEDDEGGIAAWQIDGQTAHKLNT-VVAPGTPPAYVAVDEA 96 (347)
T ss_dssp EEEETTTTEEEEEEEEEECSCCCCEEECTT-CE--EEEEEEETTEEEEEEEEEETTEEEEEEE-EEEESCCCSEEEEETT
T ss_pred EEEcCCCCeEEEeeeeeccCCcceEEEccC-Ce--EEEEEecCCCceEEEEEecCCcEEEeee-eecCCCCCEEEEECCC
Confidence 344444443333 2333456777777764 45 9998764 6789988887665322222 2223568999999987
Q ss_pred cCceeEEEeeecCCCCCCCCCCEEEEccC--CCcccccccc-----------CcCCCceEEEEccCCEEEEEeCCCCeEE
Q psy14257 308 GKNLYMFWAFWSLSPSNSSDGGIEKAGMH--GENRSPLVTK-----------NIQWPSSLVIDYNQDILYWCDSHLNTVE 374 (841)
Q Consensus 308 ~~~~y~~~td~~~~~~~~~~~~I~~~~~d--G~~~~~l~~~-----------~~~~P~glavD~~~~~lYwaD~~~~~I~ 374 (841)
++.+|+ +.+ .++.|..++++ |+. ..+... ....|.+++++++++ ||+++...+.|.
T Consensus 97 g~~l~~--~~~-------~~~~v~v~~~~~~g~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~ 165 (347)
T 3hfq_A 97 RQLVYS--ANY-------HKGTAEVMKIAADGAL-TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVY 165 (347)
T ss_dssp TTEEEE--EET-------TTTEEEEEEECTTSCE-EEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred CCEEEE--EeC-------CCCEEEEEEeCCCCCe-eecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEE
Confidence 755554 332 23466666653 332 221111 123577899999888 999999999999
Q ss_pred EEEec-CCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCC---ceEE--EEecCC-----C
Q psy14257 375 SVRVD-GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSG---QFRR--TLIAGD-----M 443 (841)
Q Consensus 375 ~~~ld-G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G---~~~~--~l~~~~-----l 443 (841)
.++++ ......+..........+. .++++..++.||+++...+.|.+++++. +... .+.... .
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~------~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPR------HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEE------EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCc------eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 99998 3333322211110000000 1234445567999999889999988873 3221 111111 1
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC-CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE-HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~-~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
..|.+|+++|+..+||+++.. .+.|...+++.. ..+.+... ......|.++++++++++||+++...+.|..++
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQQI---STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEEEE---ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeEEE---ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 458999999998899999976 567777776522 22222221 023457999999998889999998888888875
Q ss_pred cC
Q psy14257 523 YD 524 (841)
Q Consensus 523 ~d 524 (841)
++
T Consensus 315 ~d 316 (347)
T 3hfq_A 315 RD 316 (347)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-08 Score=111.90 Aligned_cols=275 Identities=14% Similarity=0.161 Sum_probs=187.4
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+.||++....+.|.+.+++.......+... ..|.+++++|...+||++... .+.|...++........+. .
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--d~~i~v~d~~~~~~~~~~~------~ 72 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVP------A 72 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEE------C
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCC--CCeEEEEECCCCeEEEEEE------C
Confidence 678999988899999998754443333322 569999999998899999865 5788888885443333333 2
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCc
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
-..|.++++++.+++||++....+.|..+++............ ..|.++++. +.+||++....+.|..++..+++
T Consensus 73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 149 (391)
T 1l0q_A 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 2378999999989999999988899999999876554444332 356788874 34677887666666555533221
Q ss_pred ceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEE
Q psy14257 571 DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGV 650 (841)
Q Consensus 571 ~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~ 650 (841)
.... +
T Consensus 150 ~~~~---------------------------------------------------------------------------~ 154 (391)
T 1l0q_A 150 VINT---------------------------------------------------------------------------V 154 (391)
T ss_dssp EEEE---------------------------------------------------------------------------E
T ss_pred EEEE---------------------------------------------------------------------------E
Confidence 1110 0
Q ss_pred ecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEE
Q psy14257 651 DLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQ 730 (841)
Q Consensus 651 ~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (841)
.. -..+..++|++.++.||++....++|+..++.... ..
T Consensus 155 ~~---------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~--------------------------~~ 193 (391)
T 1l0q_A 155 SV---------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--------------------------VI 193 (391)
T ss_dssp EC---------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------------------------EE
T ss_pred ec---------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe--------------------------EE
Confidence 00 01234566777777888877777788888776544 12
Q ss_pred EEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCC
Q psy14257 731 LVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 731 ~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~ 810 (841)
..+. ....|.++++++.++.||.+..+...+.|.++++........+.. -..|.+++++|...+||.+....
T Consensus 194 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 194 DTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-------GPDPAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp EEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-------CSSEEEEEECTTSSEEEEEETTT
T ss_pred EEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec-------CCCccEEEEccCCCEEEEEcCCC
Confidence 2222 234688999999999999995322578999999976544334433 24789999999988999987655
Q ss_pred CcceEEEEecCCCce
Q psy14257 811 QVVTIEMAFMDGTKR 825 (841)
Q Consensus 811 ~~~~I~~~~~dG~~~ 825 (841)
++|...++.....
T Consensus 266 --~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 266 --NTVSVIDTATNTI 278 (391)
T ss_dssp --TEEEEEETTTTEE
T ss_pred --CEEEEEECCCCcE
Confidence 3688777764433
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-09 Score=113.08 Aligned_cols=260 Identities=16% Similarity=0.170 Sum_probs=168.2
Q ss_pred CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCC----C
Q psy14257 441 GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS----D 516 (841)
Q Consensus 441 ~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~----~ 516 (841)
.....|.++++++. |.|||++.. .+.|++.++++...+.+.. .....|.+|++|+ +++||++.... +
T Consensus 42 ~~~~~~~~~~~~~~-g~l~~~~~~--~~~i~~~d~~~~~~~~~~~-----~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQ-GQLFLLDVF--EGNIFKINPETKEIKRPFV-----SHKANPAAIKIHK-DGRLFVCYLGDFKSTG 112 (333)
T ss_dssp SSCCCEEEEEECTT-SCEEEEETT--TCEEEEECTTTCCEEEEEE-----CSSSSEEEEEECT-TSCEEEEECTTSSSCC
T ss_pred ccCccccCcEECCC-CCEEEEECC--CCEEEEEeCCCCcEEEEee-----CCCCCcceEEECC-CCcEEEEeCCCCCCCc
Confidence 45678999999975 779999876 6799999998766555543 2346799999995 57899998765 6
Q ss_pred eEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCC------CeEEEEeccCCcceEEEecccCCCceeccCC
Q psy14257 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRT------NSVIRANKWNGSDVTLIQRTLTQPFIYVNGV 589 (841)
Q Consensus 517 ~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~------~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp 589 (841)
.|.++++++.....+.........|.+|++. ++.+|+++... +.|++++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~------------------------ 168 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS------------------------ 168 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC------------------------
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEe------------------------
Confidence 8999999988766454322223468888885 57888887532 1111111
Q ss_pred cccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCC
Q psy14257 590 VKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVF 669 (841)
Q Consensus 590 ~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 669 (841)
+++ ..+..+. ....
T Consensus 169 ------------------------------------~~~----------------~~~~~~~--------------~~~~ 182 (333)
T 2dg1_A 169 ------------------------------------PDF----------------RTVTPII--------------QNIS 182 (333)
T ss_dssp ------------------------------------TTS----------------CCEEEEE--------------EEES
T ss_pred ------------------------------------CCC----------------CEEEEee--------------cCCC
Confidence 000 0000000 0112
Q ss_pred CceEEEEecCCCEEEEEECCCCeEEEEEcc--cCceeeeeeeeeeeecccccccccccCceEEEEee-CCCCCcceeEEe
Q psy14257 670 SPNNLNFDAANKKIYWTDQEYNEVKRSSIV--GGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVD-AGISHPSGLAID 746 (841)
Q Consensus 670 ~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~glAvD 746 (841)
.+.++++++..+.||+++...+.|++++++ |...+.+. ...+.. .+...|.+|++|
T Consensus 183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~---------------------~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG---------------------ATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE---------------------EEEEEECCSSSEEEEEEEB
T ss_pred cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc---------------------ceEEEecCCCCCCCceEEC
Confidence 456789999888999999888999999884 33211100 011111 122478999999
Q ss_pred ecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCC---cceEEEEecCCC
Q psy14257 747 WIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ---VVTIEMAFMDGT 823 (841)
Q Consensus 747 ~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~---~~~I~~~~~dG~ 823 (841)
..+ +||++. ...++|.+++++|+....+.... ...+.+..|.+++++|..+.||++..... .+.|.+..++..
T Consensus 242 ~~G-~l~v~~--~~~~~v~~~d~~g~~~~~~~~~~-~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~~ 317 (333)
T 2dg1_A 242 SDD-NLYVAM--YGQGRVLVFNKRGYPIGQILIPG-RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK 317 (333)
T ss_dssp TTC-CEEEEE--ETTTEEEEECTTSCEEEEEECTT-GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred CCC-CEEEEE--cCCCEEEEECCCCCEEEEEEcCC-CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecccC
Confidence 875 688883 35688999999887655543220 00001237999999988779999887531 246888877654
Q ss_pred c
Q psy14257 824 K 824 (841)
Q Consensus 824 ~ 824 (841)
.
T Consensus 318 g 318 (333)
T 2dg1_A 318 G 318 (333)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-09 Score=119.15 Aligned_cols=277 Identities=14% Similarity=0.135 Sum_probs=190.7
Q ss_pred eeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccc
Q psy14257 264 MVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPL 343 (841)
Q Consensus 264 ~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l 343 (841)
.||++....+.|...++..+. ....+. .-..|.++++.+.++.+|+ +. ..++.|..+++........
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~---~~~~~~-~~~~~~~~~~s~dg~~l~~--~~-------~~d~~i~v~d~~~~~~~~~ 69 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK---VTATIP-VGSNPMGAVISPDGTKVYV--AN-------AHSNDVSIIDTATNNVIAT 69 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE---EEEEEE-CSSSEEEEEECTTSSEEEE--EE-------GGGTEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCe---EEEEee-cCCCcceEEECCCCCEEEE--EC-------CCCCeEEEEECCCCeEEEE
Confidence 378888888888888876653 222233 2346888898876644444 32 2346888888754333222
Q ss_pred cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC
Q psy14257 344 VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD 423 (841)
Q Consensus 344 ~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~ 423 (841)
... -..|.++++++++++||++....+.|+.+++........+... .... .+++...++.||++....+
T Consensus 70 ~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----~~~~------~~~~s~dg~~l~~~~~~~~ 138 (391)
T 1l0q_A 70 VPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----KSPL------GLALSPDGKKLYVTNNGDK 138 (391)
T ss_dssp EEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----SSEE------EEEECTTSSEEEEEETTTT
T ss_pred EEC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----CCcc------eEEECCCCCEEEEEeCCCC
Confidence 222 2388999999999999999999999999999876544333211 0000 0122333467989998889
Q ss_pred cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 424 QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 424 ~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
.|.+.++........+.. -..|.+++++|...+||++... .+.|...++........+. .-..|.++++++
T Consensus 139 ~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~~~ 209 (391)
T 1l0q_A 139 TVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNSVIDTVK------VEAAPSGIAVNP 209 (391)
T ss_dssp EEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEE------CSSEEEEEEECT
T ss_pred EEEEEECCCCcEEEEEec-CCCcceEEECCCCCEEEEEeCC--CCEEEEEECCCCeEEEEEe------cCCCccceEECC
Confidence 999999875544333332 2578999999998899998766 6789999887554443333 234689999999
Q ss_pred cCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 504 QLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 504 ~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
.+.+||++.. ..+.|..+++........+... ..|.++++. +.+||++....+.|..++..+++....+.
T Consensus 210 ~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 8889999886 6789999999865544444332 357888885 45799998888999999987776555543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-09 Score=117.59 Aligned_cols=309 Identities=9% Similarity=0.089 Sum_probs=178.6
Q ss_pred CceeEEEcCCCCeEEEEecCC-CCCeEEEecCCCC--CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC---CCCeE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDS-KAPRIERCSMSGE--HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA---KSDSI 518 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~-~~~~I~r~~ldG~--~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~---~~~~I 518 (841)
+|..++..+..-++|+..+.. ....|+...+|.. ..+.+.. .....|.+|++++.+++||.+.. ..+.|
T Consensus 3 ~p~~~~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-----~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v 77 (361)
T 3scy_A 3 QPTDPSTTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-----AEVANPSYLIPSADGKFVYSVNEFSKDQAAV 77 (361)
T ss_dssp ---CCCGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-----EECSCCCSEEECTTSSEEEEEECCSSTTCEE
T ss_pred CCCChhhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-----ccCCCCceEEECCCCCEEEEEEccCCCCCcE
Confidence 466666666666788886542 2346666666532 3333332 14578999999998889999987 34677
Q ss_pred EEEEcCC--CeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCC
Q psy14257 519 HTVTYDG--KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCE 596 (841)
Q Consensus 519 ~~~~~dG--~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~ 596 (841)
..++++. ...+.+.........|..+++.+.+||+++...+.|..++.........+.... . ....+.+|-.
T Consensus 78 ~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-----~-~~g~~~~~~~ 151 (361)
T 3scy_A 78 SAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVI-----E-FKGSGPDKER 151 (361)
T ss_dssp EEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE-----E-CCCCCSCTTT
T ss_pred EEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeE-----E-ccCCCCCccc
Confidence 6665554 333333322112357899999667899999888888777654332211100000 0 0000111100
Q ss_pred CCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeec--CCeEEEEecCCCCc----c-c-----cceee
Q psy14257 597 MNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSR--PREIRGVDLEHPYY----H-T-----IPTIS 664 (841)
Q Consensus 597 ~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~--~~~i~~~~l~~~~~----~-~-----~~~~~ 664 (841)
... .| +.+..+.+| ..+|+++. .+.|+.+.++.... . . .....
T Consensus 152 ~~~---~~--------------~~~~~~spd--------g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (361)
T 3scy_A 152 QTM---PH--------------LHCVRITPD--------GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK 206 (361)
T ss_dssp CSS---CC--------------EEEEEECTT--------SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred cCC---Cc--------------ceEEEECCC--------CCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence 000 00 011112222 22344443 34566666654331 1 0 01223
Q ss_pred cCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeE
Q psy14257 665 IPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLA 744 (841)
Q Consensus 665 ~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glA 744 (841)
......|..++|+|..+.+|+++...++|..++++....+.+. ...........|.+|+
T Consensus 207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ---------------------TVAADTVNAQGSGDIH 265 (361)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE---------------------EEESCSSCCCCEEEEE
T ss_pred cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE---------------------EEecCCCCCCCcccEE
Confidence 3334568899999999999999988899999988754411110 0001112345678999
Q ss_pred EeecCCcEEEEecCCC-CCeEEEEecC---CcceEEEEc--CCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEE
Q psy14257 745 IDWIAQNMFIAVSSPT-QSKIVVCNLE---GEYQTTILS--NESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMA 818 (841)
Q Consensus 745 vD~~~~~LYw~~~~~~-~~~I~v~~l~---g~~~~~~~~--~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~ 818 (841)
+++.++.||.++ .. .++|.+++++ |+.. .+.. . -..|++|+++|...+||.+....+ +|...
T Consensus 266 ~spdg~~l~v~~--~~~~~~i~v~~~~~~~g~~~-~~~~~~~-------g~~~~~~~~spdg~~l~~~~~~~~--~v~v~ 333 (361)
T 3scy_A 266 LSPDGKYLYASN--RLKADGVAIFKVDETNGTLT-KVGYQLT-------GIHPRNFIITPNGKYLLVACRDTN--VIQIF 333 (361)
T ss_dssp ECTTSSEEEEEE--CSSSCEEEEEEECTTTCCEE-EEEEEEC-------SSCCCEEEECTTSCEEEEEETTTT--EEEEE
T ss_pred ECCCCCEEEEEC--CCCCCEEEEEEEcCCCCcEE-EeeEecC-------CCCCceEEECCCCCEEEEEECCCC--CEEEE
Confidence 999999999994 45 6889999986 3322 2221 1 258999999999889999987654 56665
Q ss_pred ecCC
Q psy14257 819 FMDG 822 (841)
Q Consensus 819 ~~dG 822 (841)
.+|-
T Consensus 334 ~~d~ 337 (361)
T 3scy_A 334 ERDQ 337 (361)
T ss_dssp EECT
T ss_pred EEEC
Confidence 5553
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-10 Score=119.86 Aligned_cols=240 Identities=13% Similarity=0.097 Sum_probs=149.9
Q ss_pred EEEEecc-ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeec
Q psy14257 241 VIALISS-LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWS 319 (841)
Q Consensus 241 ~~~l~~~-~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~ 319 (841)
++.+... ...+.+..|+.+.+. |||+|...++|++.+++++. ... +.. -..|.++++++.+ ++|+. +
T Consensus 40 ~~~~~~~~~~~~egp~~~~~~~~--l~~~d~~~~~i~~~d~~~~~---~~~-~~~-~~~v~~i~~~~dg-~l~v~-~--- 107 (326)
T 2ghs_A 40 GRVLDETPMLLGEGPTFDPASGT--AWWFNILERELHELHLASGR---KTV-HAL-PFMGSALAKISDS-KQLIA-S--- 107 (326)
T ss_dssp CEEEECSCCSBEEEEEEETTTTE--EEEEEGGGTEEEEEETTTTE---EEE-EEC-SSCEEEEEEEETT-EEEEE-E---
T ss_pred eEEeeccCCCCCcCCeEeCCCCE--EEEEECCCCEEEEEECCCCc---EEE-EEC-CCcceEEEEeCCC-eEEEE-E---
Confidence 3444442 334567788876666 99999999999999887653 222 222 2468889888653 44442 1
Q ss_pred CCCCCCCCCCEEEEccCCCcccccccc----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCC
Q psy14257 320 LSPSNSSDGGIEKAGMHGENRSPLVTK----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD 395 (841)
Q Consensus 320 ~~~~~~~~~~I~~~~~dG~~~~~l~~~----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~ 395 (841)
...|.+++.++...+.+... ....|+++++|+++ +||+++.....
T Consensus 108 -------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~----------------------- 156 (326)
T 2ghs_A 108 -------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKA----------------------- 156 (326)
T ss_dssp -------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTC-----------------------
T ss_pred -------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcC-----------------------
Confidence 12577777754444433221 12456777777653 35554421000
Q ss_pred CccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC
Q psy14257 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM 475 (841)
Q Consensus 396 ~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l 475 (841)
+...+.|++++ +|+... +. ..+..|++|++++....||+++.. ..+|+++++
T Consensus 157 -----------------------~~~~~~l~~~~-~g~~~~-~~-~~~~~~~~i~~s~dg~~lyv~~~~--~~~I~~~d~ 208 (326)
T 2ghs_A 157 -----------------------ETGAGSIYHVA-KGKVTK-LF-ADISIPNSICFSPDGTTGYFVDTK--VNRLMRVPL 208 (326)
T ss_dssp -----------------------CTTCEEEEEEE-TTEEEE-EE-EEESSEEEEEECTTSCEEEEEETT--TCEEEEEEB
T ss_pred -----------------------CCCceEEEEEe-CCcEEE-ee-CCCcccCCeEEcCCCCEEEEEECC--CCEEEEEEc
Confidence 00123344444 333222 11 234579999999987799999976 679999998
Q ss_pred C---C-C--CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-c
Q psy14257 476 S---G-E--HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-E 548 (841)
Q Consensus 476 d---G-~--~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~ 548 (841)
+ | . .++.+... ......|.|+++|. +++||++....+.|.+++++|.....+... ...|.++++. .
T Consensus 209 ~~~~Gl~~~~~~~~~~~---~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~g~~~~~i~~~---~~~~~~~af~g~ 281 (326)
T 2ghs_A 209 DARTGLPTGKAEVFIDS---TGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTDGNHIARYEVP---GKQTTCPAFIGP 281 (326)
T ss_dssp CTTTCCBSSCCEEEEEC---TTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTTCCEEEEEECS---CSBEEEEEEEST
T ss_pred ccccCCcccCceEEEEC---CCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCCCCEEEEEECC---CCCcEEEEEecC
Confidence 5 4 2 23444331 01345799999995 578999988778999999988766655432 2468889886 2
Q ss_pred --CeEEEEeCCC
Q psy14257 549 --NHVYWTDWRT 558 (841)
Q Consensus 549 --~~lY~td~~~ 558 (841)
+.||++....
T Consensus 282 d~~~L~vt~~~~ 293 (326)
T 2ghs_A 282 DASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEEBCT
T ss_pred CCCEEEEEecCC
Confidence 5799987654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-09 Score=116.78 Aligned_cols=265 Identities=12% Similarity=0.015 Sum_probs=162.9
Q ss_pred CCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCC--Cccccccc--cCcCCCceEEEEccCCEEEEEeCCC
Q psy14257 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG--ENRSPLVT--KNIQWPSSLVIDYNQDILYWCDSHL 370 (841)
Q Consensus 295 ~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG--~~~~~l~~--~~~~~P~glavD~~~~~lYwaD~~~ 370 (841)
....|..+++++.++.+|+. ... +...+.|..+.++. ...+.+.. ..-..|..+++ .+++||+++...
T Consensus 48 ~~~~p~~l~~spdg~~l~~~--~~~----~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~ 119 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSV--NEF----SKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSG 119 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEE--ECC----SSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTT
T ss_pred cCCCCceEEECCCCCEEEEE--Ecc----CCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCC
Confidence 45689999999877555553 221 01235676655543 23333322 23457889998 688999999999
Q ss_pred CeEEEEEecCCcc-EEEEeeeeecCCCcc----ccCCCCCCccccccceEEEEecCCCcEEEEccCCce--------E--
Q psy14257 371 NTVESVRVDGSER-TVSFNLEVLGSDSRV----GIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF--------R-- 435 (841)
Q Consensus 371 ~~I~~~~ldG~~~-~~~~~~~~~~~~~~~----~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~--------~-- 435 (841)
+.|..++++.... ..+............ ..+....++++..++.||+++...+.|.+++++... .
T Consensus 120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence 9999999864321 111100000000000 000001134555567799999988999998776322 1
Q ss_pred ---EEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEe
Q psy14257 436 ---RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 436 ---~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d 512 (841)
..+.......|++++++|...+||+++.. .+.|...+++....+.+............|.++++++++++||+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~ 277 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI--GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN 277 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred ccccceecCCCCCCeEEEEcCCCCEEEEEcCC--CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC
Confidence 12222334679999999998899999966 5678888876433333332211223456688999999999999999
Q ss_pred CC-CCeEEEEEcC--CCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEE--EeccCCc
Q psy14257 513 AK-SDSIHTVTYD--GKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIR--ANKWNGS 570 (841)
Q Consensus 513 ~~-~~~I~~~~~d--G~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~--~~~~~g~ 570 (841)
.. .+.|..++++ ....+.+..... -..|.++++. +.+||+++...+.|.. ++..+|+
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 87 7888888875 222222221111 2468899984 4579999977777655 5655554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-08 Score=109.69 Aligned_cols=285 Identities=13% Similarity=0.141 Sum_probs=182.7
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEec-----CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA-----GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRS 481 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~-----~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~ 481 (841)
++++ ++.+|++....+.|.+.+++......... .......++++++ +|.+|++... .+.|...+++.....
T Consensus 129 ~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~--d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 129 RFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQ--ANAVHVFDLKTLAYK 204 (433)
T ss_dssp EESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGG--GTEEEEEETTTCCEE
T ss_pred EEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECC--CCEEEEEECCCceEE
Confidence 3444 68899998888899999987543333221 2234567899976 4788888865 678999988765444
Q ss_pred EEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCC
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTN 559 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~ 559 (841)
..+. .....|.++++++.+++||++....+.|..+++........... ...|.++++. +.+||.+....+
T Consensus 205 ~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 205 ATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK---IGLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp EEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC---CSEEEEEEECTTSSEEEEEEEESC
T ss_pred EEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC---CCCceEEEEcCCCCEEEEEECCCC
Confidence 3333 34567899999999999999998888999999876544333322 2346777774 235666553322
Q ss_pred eEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeE
Q psy14257 560 SVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFI 639 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l 639 (841)
.+. ..+
T Consensus 277 ~~~------~~d-------------------------------------------------------------------- 282 (433)
T 3bws_A 277 NQE------SGG-------------------------------------------------------------------- 282 (433)
T ss_dssp TTC------SCC--------------------------------------------------------------------
T ss_pred ccc------cCC--------------------------------------------------------------------
Confidence 110 000
Q ss_pred EeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccccc
Q psy14257 640 IFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLS 719 (841)
Q Consensus 640 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~ 719 (841)
..|+.+++..... ...+.. ...+..++|++..+.+|++....++|+..++.+..
T Consensus 283 -----g~i~~~d~~~~~~--~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----------------- 336 (433)
T 3bws_A 283 -----GRLGIYSMDKEKL--IDTIGP--PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK----------------- 336 (433)
T ss_dssp -----EEEEEEETTTTEE--EEEEEE--EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-----------------
T ss_pred -----CeEEEEECCCCcE--EeeccC--CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-----------------
Confidence 0011111110000 000000 02356788999888999998889999999987654
Q ss_pred ccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCC------------CCeEEEEecCCcceEEEEcCCCCCCCc
Q psy14257 720 KRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPT------------QSKIVVCNLEGEYQTTILSNESNDTST 787 (841)
Q Consensus 720 ~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~------------~~~I~v~~l~g~~~~~~~~~~~~~~~~ 787 (841)
....+. ....|.+|++++.++.||.+..+.. .++|.++++........+..
T Consensus 337 ---------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------- 399 (433)
T 3bws_A 337 ---------VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------- 399 (433)
T ss_dssp ---------EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-------
T ss_pred ---------EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-------
Confidence 222222 3456899999999999999953211 23899999865544334443
Q ss_pred CCCceEEEEeCCCCeEEEEecCCCcceEEEEecCC
Q psy14257 788 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG 822 (841)
Q Consensus 788 l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG 822 (841)
...|.+|+++|...+||.+.... ++|...++++
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d--~~i~v~~~~~ 432 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLD--HQIRVYRRDG 432 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTT--TEEEEEEETT
T ss_pred CCCCceEEEcCCCCEEEEEECCC--CeEEEEEecC
Confidence 35899999999988998887644 3677777665
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-10 Score=125.45 Aligned_cols=265 Identities=14% Similarity=0.116 Sum_probs=162.6
Q ss_pred cccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcc---cceEEEEeCCCCCccceEEeee---cCce
Q psy14257 238 TFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSL---SNIDVVVQTGLSTAEGLAVDWI---GKNL 311 (841)
Q Consensus 238 ~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~---~~~~~~~~~~l~~p~giavD~~---~~~~ 311 (841)
+..++.++.++..+.+|.|+..... ||+++. .++|++.+.++... .....+...+...|.|||+++. .+.+
T Consensus 7 g~~~~~va~~l~~P~~i~~~pdG~~--l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 7 TVNVEVLQDKLDHPWALAFLPDNHG--MLITLR-GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp CSEEEEEEEEESSEEEEEECSTTCC--EEEEET-TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CcEEEEEECCCCCcEEEEEcCCCCE--EEEEeC-CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEE
Confidence 3466777788889999999886433 899986 58999987543210 0011122344557889999974 5567
Q ss_pred eEEEeeecCCCCCCCCCCEEEEccCCC-----ccccccc------cCcCCCceEEEEccCCEEEEEeCC-----------
Q psy14257 312 YMFWAFWSLSPSNSSDGGIEKAGMHGE-----NRSPLVT------KNIQWPSSLVIDYNQDILYWCDSH----------- 369 (841)
Q Consensus 312 y~~~td~~~~~~~~~~~~I~~~~~dG~-----~~~~l~~------~~~~~P~glavD~~~~~lYwaD~~----------- 369 (841)
|++.+..... .....+|.|+..++. ..++++. ...+.|.+|+++++ ++||++...
T Consensus 84 Yv~~~~~~~~--g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~Gd~~~~~~~q~~~ 160 (353)
T 2g8s_A 84 WLSYSEVGDD--GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK-GYLFIALGENNQRPTAQDLD 160 (353)
T ss_dssp EEEEEEECSS--SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS-SEEEEEECCTTCGGGGGCTT
T ss_pred EEEEeCCCCC--CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC-CcEEEEECCCCCCCccCCCC
Confidence 7765543211 011347999887643 2233322 23567999999986 599999643
Q ss_pred --CCeEEEEEecCCc-------------cEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC---cEEEEccC
Q psy14257 370 --LNTVESVRVDGSE-------------RTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD---QIEVAKLS 431 (841)
Q Consensus 370 --~~~I~~~~ldG~~-------------~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~---~I~v~~~~ 431 (841)
.++|.|++.+|+. .+++. .|+.+...+++|..+++||++|...+ .|.++...
T Consensus 161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a----------~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G 230 (353)
T 2g8s_A 161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWS----------YGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKG 230 (353)
T ss_dssp SCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEE----------ECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTT
T ss_pred CCCeEEEEECCCCCCCCCCCCcCCCCCCccEEE----------EcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccC
Confidence 4689999999862 22211 01111112345555699999997643 44443222
Q ss_pred Cce----------------------------EEEEecCCCCCceeEEEcC------CCCeEEEEecCCCCCeEEEecCCC
Q psy14257 432 GQF----------------------------RRTLIAGDMESPRAIALDP------RFGLLFWTDWDSKAPRIERCSMSG 477 (841)
Q Consensus 432 G~~----------------------------~~~l~~~~l~~P~giavd~------~~g~Ly~td~~~~~~~I~r~~ldG 477 (841)
+.+ ...........|.|+++.. .+|.||++++. ..+|.++.+++
T Consensus 231 ~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~--~~~v~~~~~~~ 308 (353)
T 2g8s_A 231 KNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK--DKDVIVMSVNG 308 (353)
T ss_dssp CBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT--TTEEEEEEEET
T ss_pred CcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc--CCEEEEEEeCC
Confidence 110 0000011123688999974 35899999998 78999999986
Q ss_pred CCcEEEEEecccCCCCCCceeEEEeccCCEEEEE-eCCCCeEEEEEc
Q psy14257 478 EHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI-DAKSDSIHTVTY 523 (841)
Q Consensus 478 ~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~-d~~~~~I~~~~~ 523 (841)
.. .+....+.......|.+|++++ .+.||++ |...++|+++.+
T Consensus 309 ~~--~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 309 DK--VTEDGRILTDRGQRIRDVRTGP-DGYLYVLTDESSGELLKVSP 352 (353)
T ss_dssp TE--EEEEEEESGGGCCCEEEEEECT-TSCEEEEECSTTEEEEEEEC
T ss_pred Ce--EeeeEEcccCCCCceeEEEECC-CCcEEEEEeCCCCEEEEEeC
Confidence 42 1211111112345899999996 4679996 667789998864
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=115.43 Aligned_cols=89 Identities=28% Similarity=0.562 Sum_probs=40.1
Q ss_pred CCCCCCCCccc--ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEee
Q psy14257 121 ACFNGEDEMFC--DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTC 198 (841)
Q Consensus 121 ~C~~g~de~~C--~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C 198 (841)
...+++....| +||...++.|++.|.+++++|.|.|++||.+. +++.|++++||....+|.+.|.++ .++|+|.|
T Consensus 17 ~~~~~~~~~~Cd~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~dideC~~~~~C~~~C~n~--~gsy~C~C 93 (107)
T 2w2n_E 17 TTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-AQRRCEDIDECQDPDTCSQLCVNL--EGGYKCQC 93 (107)
T ss_dssp ---CCCCSCCBSCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE-TTTEEEC---------------------------
T ss_pred ccCCCcCCCCCcCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc-CCCccccccccCCCCCcCCeeecC--CCCEEEEC
Confidence 34556666667 78886667899999999999999999999975 678999999997557899999999 99999999
Q ss_pred cCCeeecCCCCceE
Q psy14257 199 HAGYELEPDMFTCK 212 (841)
Q Consensus 199 ~~G~~l~~d~~~C~ 212 (841)
++||.+..++++|+
T Consensus 94 ~~Gy~~~~d~~~C~ 107 (107)
T 2w2n_E 94 EEGFQLDPHTKACK 107 (107)
T ss_dssp --------------
T ss_pred CCCceECCCCCccC
Confidence 99999988888774
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-09 Score=113.50 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=81.8
Q ss_pred CCCCceeEEEcCC---CCeEEEEecCCCCCeEEEecCCCC--------CcEEEEEecccCCCCCCceeEEEeccCCEEEE
Q psy14257 442 DMESPRAIALDPR---FGLLFWTDWDSKAPRIERCSMSGE--------HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYW 510 (841)
Q Consensus 442 ~l~~P~giavd~~---~g~Ly~td~~~~~~~I~r~~ldG~--------~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw 510 (841)
+...|.|||++|. +|+||++.......+|.|+.+++. ..++|+.. +.....+.+..|++++ .++||+
T Consensus 78 g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~-~p~~~~H~g~~l~fgp-DG~Lyv 155 (347)
T 3das_A 78 GEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRG-IPKGVIHNGGRIAFGP-DKMLYA 155 (347)
T ss_dssp TTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEE-ECCCSSCCCCCEEECT-TSCEEE
T ss_pred CCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEc-CCCCCCccCccccCCC-CCCEEE
Confidence 4567999999995 789998754323679999998762 24455431 1113456678899996 579999
Q ss_pred EeC-------------CCCeEEEEEcCCC--------eeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCC
Q psy14257 511 IDA-------------KSDSIHTVTYDGK--------DHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTN 559 (841)
Q Consensus 511 ~d~-------------~~~~I~~~~~dG~--------~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~ 559 (841)
+.. ..++|.++++||+ ..+++..+ +.+|+||++. .+.||++|....
T Consensus 156 t~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G---~RNp~Gla~dp~G~L~~~d~g~~ 223 (347)
T 3das_A 156 GTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYG---HRNVQGLAWDDKQRLFASEFGQD 223 (347)
T ss_dssp ECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBC---CSBCCEEEECTTCCEEEEECCSS
T ss_pred EECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeC---CCCcceEEECCCCCEEEEecCCC
Confidence 942 3689999999997 44444433 6889999996 589999997653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-10 Score=121.95 Aligned_cols=209 Identities=13% Similarity=0.132 Sum_probs=142.5
Q ss_pred cccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc-ccceEEEEec
Q psy14257 342 PLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW-IGKNLYWVES 420 (841)
Q Consensus 342 ~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw-~~~~LY~tD~ 420 (841)
.+.......|.|+++|++++.|||+|...+.|+++++++...+.+... ... ..+.| -.+++|++.
T Consensus 42 ~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~-----~~v--------~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 42 VLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP-----FMG--------SALAKISDSKQLIAS- 107 (326)
T ss_dssp EEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS-----SCE--------EEEEEEETTEEEEEE-
T ss_pred EeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECC-----Ccc--------eEEEEeCCCeEEEEE-
Confidence 344445678899999999999999999999999999988765443210 000 01111 126777775
Q ss_pred CCCcEEEEccCCceEEEEecC----CCCCceeEEEcCCCCeEEEEecCC----CCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 421 NLDQIEVAKLSGQFRRTLIAG----DMESPRAIALDPRFGLLFWTDWDS----KAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 421 ~~~~I~v~~~~G~~~~~l~~~----~l~~P~giavd~~~g~Ly~td~~~----~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
.+.|.++++++...+.+... ....|+++++|+. |.||+++.+. ....|++++ +|+... +.. .
T Consensus 108 -~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~~~------~ 177 (326)
T 2ghs_A 108 -DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGKVTK-LFA------D 177 (326)
T ss_dssp -TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EEE------E
T ss_pred -CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-CCcEEE-eeC------C
Confidence 34588888865444444321 1246899999986 6788887531 146899998 654332 222 3
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcC---C-C--eeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEe
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD---G-K--DHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d---G-~--~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~ 565 (841)
+..|++++++++++.|||++...+.|.+++++ | . .++.+.........|.+++++ ++.||++.+..+.|.+++
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 45799999998888999999988999999986 4 2 223343322223578999996 589999999888999998
Q ss_pred ccCCcceEEE
Q psy14257 566 KWNGSDVTLI 575 (841)
Q Consensus 566 ~~~g~~~~~i 575 (841)
+ +|+....+
T Consensus 258 ~-~g~~~~~i 266 (326)
T 2ghs_A 258 T-DGNHIARY 266 (326)
T ss_dssp T-TCCEEEEE
T ss_pred C-CCCEEEEE
Confidence 7 55544433
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-10 Score=120.80 Aligned_cols=213 Identities=15% Similarity=0.147 Sum_probs=144.4
Q ss_pred ccCcCCCceEEEEccCCEEEEE-------eCCCCeEEEEEecCCccEEEEeeeee-cCCCccccCCCCCCccccccceEE
Q psy14257 345 TKNIQWPSSLVIDYNQDILYWC-------DSHLNTVESVRVDGSERTVSFNLEVL-GSDSRVGIPNCRPEDNLWIGKNLY 416 (841)
Q Consensus 345 ~~~~~~P~glavD~~~~~lYwa-------D~~~~~I~~~~ldG~~~~~~~~~~~~-~~~~~~~i~~~~~~avdw~~~~LY 416 (841)
...+..|.++++| .+++|||+ +...+.|.+++++....+.+...... ......+ +++|..+++||
T Consensus 14 ~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~------i~~~~~~g~l~ 86 (314)
T 1pjx_A 14 TEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAG------CQCDRDANQLF 86 (314)
T ss_dssp ECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEE------EEECSSSSEEE
T ss_pred hccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCce------EEEecCCCcEE
Confidence 4578899999999 56789999 88889999999765554433220000 0001111 23344447899
Q ss_pred EEecCCCcEEEEccCCceEEEE-ecC----CCCCceeEEEcCCCCeEEEEecCCC-------------CCeEEEecCCCC
Q psy14257 417 WVESNLDQIEVAKLSGQFRRTL-IAG----DMESPRAIALDPRFGLLFWTDWDSK-------------APRIERCSMSGE 478 (841)
Q Consensus 417 ~tD~~~~~I~v~~~~G~~~~~l-~~~----~l~~P~giavd~~~g~Ly~td~~~~-------------~~~I~r~~ldG~ 478 (841)
+++... .|.+++++|+.. .+ ... ....|.+|++|+. |.||+++.... ...|++.+.+|+
T Consensus 87 v~~~~~-~l~~~d~~g~~~-~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 163 (314)
T 1pjx_A 87 VADMRL-GLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ 163 (314)
T ss_dssp EEETTT-EEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC
T ss_pred EEECCC-CEEEEeCCCCEE-EEEeccCCCccccCCcCEEECCC-CCEEEEecCcccccccccccccCCCCeEEEECCCCC
Confidence 998753 799999886543 33 221 2356999999985 78999986510 268999998854
Q ss_pred CcEEEEEecccCCCCCCceeEEEe----ccCCEEEEEeCCCCeEEEEEcC--CCe--eEEEEcCCCCC-CcceEEEEe-c
Q psy14257 479 HRSVIVRVDLLTSRGAWPNGLTLD----YQLTRIYWIDAKSDSIHTVTYD--GKD--HHVVLSNHDSL-THPFAIALF-E 548 (841)
Q Consensus 479 ~~~~i~~~~~~~~~~~~P~glalD----~~~~~LYw~d~~~~~I~~~~~d--G~~--~~~i~~~~~~l-~~P~gla~~-~ 548 (841)
... +.. .+..|++++++ +.+++||+++...++|.+++++ |.. .+.+....... ..|.+|++. +
T Consensus 164 ~~~-~~~------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~ 236 (314)
T 1pjx_A 164 MIQ-VDT------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236 (314)
T ss_dssp EEE-EEE------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred EEE-ecc------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC
Confidence 332 322 35679999999 8777999999988999999976 321 12232222112 568999996 5
Q ss_pred CeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 549 NHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 549 ~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
++||++++..+.|.++++.+|+....
T Consensus 237 G~l~v~~~~~~~i~~~d~~~g~~~~~ 262 (314)
T 1pjx_A 237 NNLLVANWGSSHIEVFGPDGGQPKMR 262 (314)
T ss_dssp CCEEEEEETTTEEEEECTTCBSCSEE
T ss_pred CCEEEEEcCCCEEEEEcCCCCcEeEE
Confidence 89999998889999999876664443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-10 Score=117.00 Aligned_cols=243 Identities=12% Similarity=-0.001 Sum_probs=150.6
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCC-------CccceEE---eeecCceeEEEeeec
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLS-------TAEGLAV---DWIGKNLYMFWAFWS 319 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~-------~p~giav---D~~~~~~y~~~td~~ 319 (841)
-+.+++||...++ +|+++...++|.++++.++. ...+...++. .|.||.+ |+. +.|++. ++.+
T Consensus 14 yPE~~~wd~~~g~--~~vs~l~~g~V~~~~~~~~~---~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv-~~~~ 86 (334)
T 2p9w_A 14 TPEDTIYDRTRQV--FYQSNLYKGRIEVYNPKTQS---HFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAV-MKNA 86 (334)
T ss_dssp CCSCEEEETTTTE--EEEEETTTTEEEEECTTTCC---EEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEE-EEET
T ss_pred CCcCccCcCCCCE--EEEEeccCCEEEEEcCCCCe---EEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEE-Eccc
Confidence 3668889887666 99999999999999887554 2222333332 5789999 676 566664 5532
Q ss_pred CC----CCC-CCCCCEEEEccC----CCcccccccc------------CcCCCceEEEEccCCEEEEEeCCCCeEEEEEe
Q psy14257 320 LS----PSN-SSDGGIEKAGMH----GENRSPLVTK------------NIQWPSSLVIDYNQDILYWCDSHLNTVESVRV 378 (841)
Q Consensus 320 ~~----~~~-~~~~~I~~~~~d----G~~~~~l~~~------------~~~~P~glavD~~~~~lYwaD~~~~~I~~~~l 378 (841)
.. +.+ .....+.+++++ |+.+..+... ....|++|++|.+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~------------------- 147 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD------------------- 147 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-------------------
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-------------------
Confidence 11 001 124578899988 4433322211 2234778888854
Q ss_pred cCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC-CcEEEEccCCceEEEEecC-----CCCCceeEEEc
Q psy14257 379 DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-DQIEVAKLSGQFRRTLIAG-----DMESPRAIALD 452 (841)
Q Consensus 379 dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-~~I~v~~~~G~~~~~l~~~-----~l~~P~giavd 452 (841)
|++|++++.. +.|.+++.+|+...++... ....|.|||++
T Consensus 148 ----------------------------------GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~ 193 (334)
T 2p9w_A 148 ----------------------------------GNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFD 193 (334)
T ss_dssp ----------------------------------SCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEE
T ss_pred ----------------------------------CCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEe
Confidence 6777777666 7777777777654433321 12347799999
Q ss_pred CCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe--cccCCCCCCceeE-EEeccCCEEEEEeCCCCeEEEEEcCCCeeE
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV--DLLTSRGAWPNGL-TLDYQLTRIYWIDAKSDSIHTVTYDGKDHH 529 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~--~~~~~~~~~P~gl-alD~~~~~LYw~d~~~~~I~~~~~dG~~~~ 529 (841)
|.+..|++.+. .++|++++++-..+..+... +.. ..+..|.|| ++.+.+.-|++++...+.+...+.||-...
T Consensus 194 pdg~~Liv~~~---~g~L~~fD~~~pv~~~v~~~~~G~~-~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 194 PHSNKLIAFGG---PRALTAFDVSKPYAWPEPVKINGDF-GTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp TTTTEEEEESS---SSSEEEEECSSSSCCCEECEESSCC-CCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTSEE
T ss_pred CCCCEEEEEcC---CCeEEEEcCCCCcceeecccccCCc-ccccCcccccccccCCEEEEEEcCCCCEEEEECCCCccee
Confidence 98778888875 58999999983222112110 101 256789995 777666666999987778888888883222
Q ss_pred EEEc-CCCCCCcceEEEEe-------cCeEEEEeCC
Q psy14257 530 VVLS-NHDSLTHPFAIALF-------ENHVYWTDWR 557 (841)
Q Consensus 530 ~i~~-~~~~l~~P~gla~~-------~~~lY~td~~ 557 (841)
.+.. ....+. +.|+++. +++||+.+..
T Consensus 270 ~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 270 NIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp EEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEECC
T ss_pred EEeeeecCccc-cCceeEEEEeccccCCeEEEEeee
Confidence 2221 112222 4555543 5889998854
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-09 Score=122.08 Aligned_cols=286 Identities=10% Similarity=0.076 Sum_probs=174.3
Q ss_pred eEEEecCC----CeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCC-Cc
Q psy14257 265 VFWTDVID----DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG-EN 339 (841)
Q Consensus 265 lyw~d~~~----~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG-~~ 339 (841)
+|+++... +.|.++++..+. .. ..+..+. .| |+++++.++.+|+.-+..+........+.|..++... +.
T Consensus 87 vyV~n~~~~~~~~~VsVID~~t~~--vv-~~I~vG~-~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 87 VYIQDPAHFAAITQQFVIDGSTGR--IL-GMTDGGF-LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTE--EE-EEEEECS-SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred EEEECCCcCCCCCeEEEEECCCCE--EE-EEEECCC-CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 89998765 688888876553 22 2233343 68 9999998888887543211000000123678887653 33
Q ss_pred ccccccc---C---cCCCceEEEEccCCEEEEEeCC-CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc
Q psy14257 340 RSPLVTK---N---IQWPSSLVIDYNQDILYWCDSH-LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412 (841)
Q Consensus 340 ~~~l~~~---~---~~~P~glavD~~~~~lYwaD~~-~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~ 412 (841)
...+... . ...|.++++++++++||+++.. .+.|..+++........+.+... . .+...+
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~--------~~~p~g 228 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----Y--------HIFPAS 228 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----E--------EEEEEE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----e--------eeccCC
Confidence 3333211 1 3579999999999999999975 78999998876544332222100 0 011112
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEe---cCCCCCcee--EEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLI---AGDMESPRA--IALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD 487 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~---~~~l~~P~g--iavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~ 487 (841)
.++|++....+++.++++......... -.--..|.. +++.+..+.+|++.. .++|+.+++.+....++....
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~---~g~V~ViD~~~~~~~v~~~~~ 305 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY---TGKIFQADLTAEGATFRAPIE 305 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT---TSEEEEEEECSSCEEECCCEE
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC---CCcEEEEeccCCceEEeeeee
Confidence 455666656666665555322211111 011134533 455888788888764 368999998776544332110
Q ss_pred ccC----CCCCCcee---EEEeccCCEEEEEeC---------CCCeEEEEEcCCCee-EEEEcCCCCCCcceEEEEe--c
Q psy14257 488 LLT----SRGAWPNG---LTLDYQLTRIYWIDA---------KSDSIHTVTYDGKDH-HVVLSNHDSLTHPFAIALF--E 548 (841)
Q Consensus 488 ~~~----~~~~~P~g---lalD~~~~~LYw~d~---------~~~~I~~~~~dG~~~-~~i~~~~~~l~~P~gla~~--~ 548 (841)
... .....|.| +++++.+++||+++. ..+.|..+|+....+ .++... ..|.+|++. +
T Consensus 306 ~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg 381 (426)
T 3c75_H 306 ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDA 381 (426)
T ss_dssp SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSS
T ss_pred eccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCC
Confidence 000 01123555 899999999999974 235799999876543 334221 369999994 4
Q ss_pred C-eEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 549 N-HVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 549 ~-~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
. ++|++.+..+.|..++..+++.+..|
T Consensus 382 ~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 382 EPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 5 79999999999999999888877665
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-09 Score=111.00 Aligned_cols=205 Identities=15% Similarity=0.135 Sum_probs=139.5
Q ss_pred CCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc-ceEEEEecCCCcEEE
Q psy14257 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG-KNLYWVESNLDQIEV 427 (841)
Q Consensus 349 ~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~-~~LY~tD~~~~~I~v 427 (841)
..++||++|+++++||.+.-..++|.+++++|...+.+. ..... .++++.+.+ +.+|+++...+++.+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~-l~g~~----------D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP-LDFVK----------DLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE-CSSCS----------SEEEEEECSTTEEEEEETTTTEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe-cCCCC----------ChHHeEEeCCCEEEEEECCCCcEEE
Confidence 468999999999999987777899999999976555441 11111 112333333 556678888889998
Q ss_pred EccCCce-EE--EEecCCC-CCc-----eeEEEcCCCCeEEEEecCCCCC-eEEEec--CCCCCcEEEEEec-c-cCCCC
Q psy14257 428 AKLSGQF-RR--TLIAGDM-ESP-----RAIALDPRFGLLFWTDWDSKAP-RIERCS--MSGEHRSVIVRVD-L-LTSRG 493 (841)
Q Consensus 428 ~~~~G~~-~~--~l~~~~l-~~P-----~giavd~~~g~Ly~td~~~~~~-~I~r~~--ldG~~~~~i~~~~-~-~~~~~ 493 (841)
+.++... .. ....-.+ ..| .|||+||.++.||.+... .+ .|++.+ +.+...+++ ... + ....+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~-~~~~~~~~~~~ 172 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHIS-KDKALQRQFTL 172 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEE-ECHHHHHTCCS
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeee-cchhhcccccc
Confidence 8765432 11 1111112 234 899999998899998765 34 788887 222223332 210 0 11346
Q ss_pred CCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC------CCCCcceEEEEe-cCeEEEEeCCCCeEEEEec
Q psy14257 494 AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH------DSLTHPFAIALF-ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~------~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~ 566 (841)
..+.+|++|+.+++||+.....+.|..++.+|..+..+.-.. ..+++|-|||++ +|+||++.-. +.++++.|
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~~ 251 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFTP 251 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEEC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEEe
Confidence 679999999999999999999999999999998655543322 135789999995 5899999654 68888877
Q ss_pred cC
Q psy14257 567 WN 568 (841)
Q Consensus 567 ~~ 568 (841)
..
T Consensus 252 ~~ 253 (255)
T 3qqz_A 252 QS 253 (255)
T ss_dssp --
T ss_pred cC
Confidence 54
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-08 Score=109.90 Aligned_cols=285 Identities=11% Similarity=0.021 Sum_probs=170.7
Q ss_pred eEEEec-CCC---eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCC-Cc
Q psy14257 265 VFWTDV-IDD---KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG-EN 339 (841)
Q Consensus 265 lyw~d~-~~~---~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG-~~ 339 (841)
+|.+|. ..+ .|+++++..+. ....+..+. .| +|++.|.++.+|+.-+.+........++.|.+++... +.
T Consensus 35 ~yv~~~~~~~~~~~v~v~D~~t~~---~~~~i~~g~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~ 109 (373)
T 2mad_H 35 SYINLPAHHSAIIQQWVLDAGSGS---ILGHVNGGF-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP 109 (373)
T ss_pred EEEeCCcccCCccEEEEEECCCCe---EEEEecCCC-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE
Confidence 777776 444 66777665543 122334443 57 9999999888887543222100001234688888753 22
Q ss_pred ccccccc---C---cCCCceEEEEccCCEEEEEeCC-CCeEEEEEecCCccEEE-EeeeeecCCCccccCCCCCCccccc
Q psy14257 340 RSPLVTK---N---IQWPSSLVIDYNQDILYWCDSH-LNTVESVRVDGSERTVS-FNLEVLGSDSRVGIPNCRPEDNLWI 411 (841)
Q Consensus 340 ~~~l~~~---~---~~~P~glavD~~~~~lYwaD~~-~~~I~~~~ldG~~~~~~-~~~~~~~~~~~~~i~~~~~~avdw~ 411 (841)
...+... . ...|.++++++++++||++... .+.|..++ +....... +.... . ..+...
T Consensus 110 ~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-----~--------~~~~~~ 175 (373)
T 2mad_H 110 IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-----C--------YHIHPG 175 (373)
T ss_pred EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-----e--------EEEEeC
Confidence 2222111 0 2579999999999999999875 68899998 65543222 21110 0 011122
Q ss_pred cceEEEEecCCCcEEEEccCCceEEEEec-C--CCCCce--eEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 412 GKNLYWVESNLDQIEVAKLSGQFRRTLIA-G--DMESPR--AIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~G~~~~~l~~-~--~l~~P~--giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
++++|++....+++.++++.|+....... . .-..|. ..++.+..+.+||... .++++.+++.+...+++...
T Consensus 176 ~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---SGKILQADISAAGATNKAPI 252 (373)
T ss_pred CCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---CceEEEEeccCCcceEeeee
Confidence 35678877777888877775544322110 0 012232 2234555567777663 46899999876544433221
Q ss_pred cccC----CCCCCcee---EEEeccCCEEEEEeC---------CCCeEEEEEcCCCee-EEEEcCCCCCCcceEEEEe--
Q psy14257 487 DLLT----SRGAWPNG---LTLDYQLTRIYWIDA---------KSDSIHTVTYDGKDH-HVVLSNHDSLTHPFAIALF-- 547 (841)
Q Consensus 487 ~~~~----~~~~~P~g---lalD~~~~~LYw~d~---------~~~~I~~~~~dG~~~-~~i~~~~~~l~~P~gla~~-- 547 (841)
.... .....|.| +++++.+++||++.. ..+.|..+|+....+ .++... ..|.+|++.
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g----~~p~~i~~s~D 328 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG----HDVDAISVAQD 328 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC----CCcCeEEECCC
Confidence 1000 11224666 899999999999864 246899999986555 444322 368999995
Q ss_pred cC-eEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 548 EN-HVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 548 ~~-~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
+. .+|++.+..+.|..++..+++.+..+
T Consensus 329 g~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 34 68888888899999998888776654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=6e-09 Score=114.33 Aligned_cols=263 Identities=11% Similarity=0.031 Sum_probs=160.4
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEec-CCcccceEEEEeCCCCCccceEEeeecCceeEEEee------ecCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLI-GNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAF------WSLS 321 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~-~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td------~~~~ 321 (841)
..+..+.|+...+. ||.++.. .|...+++ .|.+ ....-......|..+++++.++.+|++.++ +++.
T Consensus 40 ~~~~~~a~spdg~~--l~~~~~~--~v~~~~~~~~g~~--~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 40 EPISWMTFDHERKN--IYGAAMK--KWSSFAVKSPTEI--VHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CCCSEEEECTTSSE--EEEEEBT--EEEEEEEEETTEE--EEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCCcEEEECCCCCE--EEEEccc--eEEEEEECCCCCE--EEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 45667777775444 8988765 77777765 4432 111111111258889999877555666554 1100
Q ss_pred CCCCCCCCEEEEcc--CCCccccccc---cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec-CCccEEEEeeeeec-C
Q psy14257 322 PSNSSDGGIEKAGM--HGENRSPLVT---KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD-GSERTVSFNLEVLG-S 394 (841)
Q Consensus 322 ~~~~~~~~I~~~~~--dG~~~~~l~~---~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld-G~~~~~~~~~~~~~-~ 394 (841)
. -..++.|..+.+ +|+....+.. .....|.++++++++++||++|...++|+.++++ ....+.+.....-. .
T Consensus 114 ~-~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 114 F-YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp E-SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred e-ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 0 002345555555 4543332221 2346799999999999999999988999999997 44333322211000 0
Q ss_pred CCccccCCCCCCccccccceEEEEecCCCcEEEEccC---CceEE---EE--ecCCC---C-------CceeEE-EcCCC
Q psy14257 395 DSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS---GQFRR---TL--IAGDM---E-------SPRAIA-LDPRF 455 (841)
Q Consensus 395 ~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~---G~~~~---~l--~~~~l---~-------~P~gia-vd~~~ 455 (841)
..+ +.++++..++.||+++...+.|.+++++ |+... .+ +..++ . .|.+|+ ++|+.
T Consensus 193 ~~p------~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG 266 (365)
T 1jof_A 193 DHP------RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp CCE------EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred CCC------CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC
Confidence 011 1124555567899998877888888765 54321 22 11111 2 489999 99998
Q ss_pred CeEEEEecCCC---CCeEEEecCC--CCCcEE--EEEecccCCCCCCceeEEEec---cCCEEEEEeCCCCeEEEEEcCC
Q psy14257 456 GLLFWTDWDSK---APRIERCSMS--GEHRSV--IVRVDLLTSRGAWPNGLTLDY---QLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 456 g~Ly~td~~~~---~~~I~r~~ld--G~~~~~--i~~~~~~~~~~~~P~glalD~---~~~~LYw~d~~~~~I~~~~~dG 525 (841)
.+||.++.+.. .+.|...+++ |..... ... .....|.++++++ .+++||+++...+.|..+++++
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~-----~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-----TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-----CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee-----cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 89999986521 1166666654 432221 122 2334689999998 6899999998888999998887
Q ss_pred CeeE
Q psy14257 526 KDHH 529 (841)
Q Consensus 526 ~~~~ 529 (841)
...+
T Consensus 342 ~~l~ 345 (365)
T 1jof_A 342 EFLH 345 (365)
T ss_dssp TEEE
T ss_pred hhCc
Confidence 7443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-07 Score=107.58 Aligned_cols=335 Identities=7% Similarity=0.028 Sum_probs=203.9
Q ss_pred ceEEEEecCCCcEEEEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
+.+|++....+.|.+.+.+. +...++- .+. .|.+++++|.+.+||.++.+ ..|...+++....+.+... .
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~-~g~-~~~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~~~~~i----~ 219 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVID-TGY-AVHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPTKVAEI----K 219 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEE-CST-TEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCEEEEEE----E
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEe-cCc-ccceEEECCCCCEEEEECCC---CeEEEEECcCCCCcEEEEE----e
Confidence 78999999999999999864 4444443 232 39999999999999999865 7899988852223333322 2
Q ss_pred CCCCceeEEEec----cCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC---------CCCcceEEEEe--cCeEEEEeC
Q psy14257 492 RGAWPNGLTLDY----QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD---------SLTHPFAIALF--ENHVYWTDW 556 (841)
Q Consensus 492 ~~~~P~glalD~----~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~---------~l~~P~gla~~--~~~lY~td~ 556 (841)
....|.++++++ ++++||++....+.|..++.........+...+ .-.++.+|++. +.++|++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 345799999998 899999999777899999876543333222210 01245677763 578999998
Q ss_pred CCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCc
Q psy14257 557 RTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636 (841)
Q Consensus 557 ~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~ 636 (841)
..+.|..++..+++...+..... + .-|.+..+.+| .
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~~--------------------------------~----~~~~~~~~spd--------g 335 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIGA--------------------------------A----PFLHDGGWDSS--------H 335 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEEC--------------------------------C----SSCCCEEECTT--------S
T ss_pred CCCeEEEEEecCCCcceeEEecc--------------------------------C----cCccCceECCC--------C
Confidence 89999988876655433111000 0 00122223333 2
Q ss_pred eeEEeec--CCeEEEEecCCCCccccceeecCCCCCc-eEEE-EecCCCEEEEEEC-CCCeEEEEEcccCceeeeeeeee
Q psy14257 637 QFIIFSR--PREIRGVDLEHPYYHTIPTISIPQVFSP-NNLN-FDAANKKIYWTDQ-EYNEVKRSSIVGGQIQLVVDAVF 711 (841)
Q Consensus 637 ~~l~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~-~~v~-~d~~~~~iyw~d~-~~~~I~~~~~~g~~~~~~~~~~~ 711 (841)
.+++++. .+.|..+++.... ....+++....++ .++. ++|..+.+|.+.. ..++|..++.+....
T Consensus 336 ~~l~va~~~~~~v~v~D~~tg~--l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~-------- 405 (543)
T 1nir_A 336 RYFMTAANNSNKVAVIDSKDRR--LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH-------- 405 (543)
T ss_dssp CEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC--------
T ss_pred CEEEEEecCCCeEEEEECCCCe--EEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCC--------
Confidence 3444442 3467666665332 2223344333332 1222 5777788888874 568999998875210
Q ss_pred eeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEec-CC---CCCeEEEEecCCcc-e-EEE-Ec---CC
Q psy14257 712 EFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS-SP---TQSKIVVCNLEGEY-Q-TTI-LS---NE 781 (841)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~-~~---~~~~I~v~~l~g~~-~-~~~-~~---~~ 781 (841)
+.......++ +...-..+..|++.+.+++||.... .. ..++|.+++++... . +++ +. +
T Consensus 406 ----------~~~~~~~v~~-l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~- 473 (543)
T 1nir_A 406 ----------PQYAWKKVAE-LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD- 473 (543)
T ss_dssp ----------TTTBTSEEEE-EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC-
T ss_pred ----------chhcCeEEEE-EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc-
Confidence 0000111223 3333356788999999999998720 01 14589999987443 2 333 11 1
Q ss_pred CCCCCcCCCceEEEEeCCCCeEEEEecCCC--cceEEEEecCCCc
Q psy14257 782 SNDTSTLSKISSIAVWPVKGKMFWSNVTKQ--VVTIEMAFMDGTK 824 (841)
Q Consensus 782 ~~~~~~l~~p~~iavd~~~g~lyw~d~~~~--~~~I~~~~~dG~~ 824 (841)
..+. -..+..+++.|...+||.+.|+.+ ...|...+..-..
T Consensus 474 ~~~~--~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 474 LGEG--AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp CCSS--CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred cCCC--CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 0000 368999999999999999988531 1467775544333
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-08 Score=108.25 Aligned_cols=224 Identities=12% Similarity=0.045 Sum_probs=143.5
Q ss_pred CEEEEccCCCccccccc-cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 329 GIEKAGMHGENRSPLVT-KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~-~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
+|++.+.++.....+.. ..-..|.++++++ ++++|++....+.|...+++............+..... ...+
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~------~v~~ 174 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG------FVET 174 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC------EEEE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC------ceeE
Confidence 55555554332222221 1234578899998 89999999988999999998655443322111100000 0011
Q ss_pred ccc-ccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 408 NLW-IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 408 vdw-~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
+.| -++++|++....+.|.+.+++.......+......|.+++++|.+.+||++... .+.|...+++........
T Consensus 175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~d~~~~~~~~~~-- 250 (433)
T 3bws_A 175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI--SEDISVIDRKTKLEIRKT-- 250 (433)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEC--
T ss_pred EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC--CCcEEEEECCCCcEEEEe--
Confidence 222 237899999888999999987644333333445689999999998999999865 578999988643322222
Q ss_pred cccCCCCCCceeEEEeccCCEEEEEeC-------CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCC
Q psy14257 487 DLLTSRGAWPNGLTLDYQLTRIYWIDA-------KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWR 557 (841)
Q Consensus 487 ~~~~~~~~~P~glalD~~~~~LYw~d~-------~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~ 557 (841)
.....|.++++++.++.||.+.. ..+.|..+++........... ...|.++++. +.++|++...
T Consensus 251 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 251 ----DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp ----CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EECEEEEEECSSTTEEEEEETT
T ss_pred ----cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CCCcceEEECCCCCEEEEEecC
Confidence 23345899999988889998874 346888999876544333321 1356777774 3478888877
Q ss_pred CCeEEEEeccCCc
Q psy14257 558 TNSVIRANKWNGS 570 (841)
Q Consensus 558 ~~~i~~~~~~~g~ 570 (841)
.+.|..++..+++
T Consensus 324 ~~~v~v~d~~~~~ 336 (433)
T 3bws_A 324 CSKIEVYDLKEKK 336 (433)
T ss_dssp TTEEEEEETTTTE
T ss_pred CCEEEEEECCCCc
Confidence 7777777765443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-09 Score=110.06 Aligned_cols=212 Identities=8% Similarity=0.075 Sum_probs=141.1
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEE
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESV 376 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~ 376 (841)
..+.|||+|+.++.+|.. +| ..++|.+.+++|...+.+...+...|.||+++. ++++|+++...++|..+
T Consensus 27 ~~lSGla~~~~~~~L~aV-~d--------~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFST-IN--------KPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVI 96 (255)
T ss_dssp SCEEEEEEETTTTEEEEE-EE--------TTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEE
T ss_pred cCcceeEEeCCCCEEEEE-EC--------CCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEE
Confidence 578999999876556542 22 246899999998877777666778999999984 56788999888999999
Q ss_pred EecCCccEEEEeeeeecCCCccccCCC--CCCccccccceEEEEecCCC-cEEEEc--cCCceEEEEe------cCCCCC
Q psy14257 377 RVDGSERTVSFNLEVLGSDSRVGIPNC--RPEDNLWIGKNLYWVESNLD-QIEVAK--LSGQFRRTLI------AGDMES 445 (841)
Q Consensus 377 ~ldG~~~~~~~~~~~~~~~~~~~i~~~--~~~avdw~~~~LY~tD~~~~-~I~v~~--~~G~~~~~l~------~~~l~~ 445 (841)
.++............+ +......+. .++++|..+++||++..... .|+.++ +.+...+++- ...+..
T Consensus 97 ~v~~~~~i~~~~~~~~--~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKI--PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EECTTCCEEEEEEEEC--CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EcCCCCeeeeeeeecc--ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 8876543111111111 110001111 23456667789999875543 666665 1222222221 123568
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc----cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL----LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~----~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
+.+|++||..|+||+.... +..|..++.+|..+..+ .... ....+..|.|||+|+ +++||++... +.++++
T Consensus 175 ~S~l~~dp~tg~lliLS~~--s~~L~~~d~~g~~~~~~-~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE~-n~~y~f 249 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHE--SRALQEVTLVGEVIGEM-SLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSEP-NRFYRF 249 (255)
T ss_dssp CCEEEEETTTTEEEEEETT--TTEEEEECTTCCEEEEE-ECSTTGGGCSSCCCSEEEEEECT-TCCEEEEETT-TEEEEE
T ss_pred ceeEEEcCCCCeEEEEECC--CCeEEEEcCCCCEEEEE-EcCCccCCcccccCCCCeeEECC-CCCEEEEcCC-ceEEEE
Confidence 9999999999999999866 78999999999844333 3110 012467999999996 5789999654 699998
Q ss_pred EcCC
Q psy14257 522 TYDG 525 (841)
Q Consensus 522 ~~dG 525 (841)
..++
T Consensus 250 ~~~~ 253 (255)
T 3qqz_A 250 TPQS 253 (255)
T ss_dssp EC--
T ss_pred EecC
Confidence 7654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-08 Score=109.08 Aligned_cols=292 Identities=11% Similarity=0.063 Sum_probs=165.6
Q ss_pred cceEEEEecCC----CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC-------CCCCeEEEecCCCCCc
Q psy14257 412 GKNLYWVESNL----DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD-------SKAPRIERCSMSGEHR 480 (841)
Q Consensus 412 ~~~LY~tD~~~----~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~-------~~~~~I~r~~ldG~~~ 480 (841)
.+.+|+++... +.|.++|+.......-+..+ ..| +|+++|++++||+++.. ...+.|..++..-...
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 37899999865 79999998765443333333 468 99999999999999852 1135788887754332
Q ss_pred EEEEEecccCC--CCCCceeEEEeccCCEEEEEeCC-CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCC
Q psy14257 481 SVIVRVDLLTS--RGAWPNGLTLDYQLTRIYWIDAK-SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWR 557 (841)
Q Consensus 481 ~~i~~~~~~~~--~~~~P~glalD~~~~~LYw~d~~-~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~ 557 (841)
..-+....... ....|.++++++++++||+++.. .+.|..+|+....+..-+... .-.++...+.+.|++...
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~----g~~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP----DCYHIFPASPTVFYMNCR 237 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----SEEEEEEEETTEEEEEET
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC----CceeeccCCCcEEEEEcC
Confidence 22222100000 13579999999999999999864 789999999865443222211 112233345677777777
Q ss_pred CCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCce
Q psy14257 558 TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQ 637 (841)
Q Consensus 558 ~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~ 637 (841)
.+++..++..+++...... ..+.....|...+ ..+.+++ ..
T Consensus 238 dG~~~~V~~~~~~v~~~~~----~~~~v~~~p~~~~----------------------------~~~~~dg-------~~ 278 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNT----EVFHTEDELLINH----------------------------PAFSLRS-------GR 278 (426)
T ss_dssp TSSEEEEECCTTCCEEEEC----CCCSCTTSCBCSC----------------------------CEECTTT-------CE
T ss_pred CCCEEEEECCCCcEEEEee----eeeccCCCceeeE----------------------------eeecCCC-------CE
Confidence 7777777664443322111 0000000010000 0011111 12
Q ss_pred eEEeecCCeEEEEecCCCCccccceeecC------CCCCc---eEEEEecCCCEEEEEECC---------CCeEEEEEcc
Q psy14257 638 FIIFSRPREIRGVDLEHPYYHTIPTISIP------QVFSP---NNLNFDAANKKIYWTDQE---------YNEVKRSSIV 699 (841)
Q Consensus 638 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~------~~~~~---~~v~~d~~~~~iyw~d~~---------~~~I~~~~~~ 699 (841)
+++.+....+..+++..........+++. ....| ..+++++.++++|+++.. .++|..+++.
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 22223333444444432211100001100 00112 237899999999999742 3578888876
Q ss_pred cCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCC-cEEEEecCCCCCeEEEEecCCc-ceEEE
Q psy14257 700 GGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQ-NMFIAVSSPTQSKIVVCNLEGE-YQTTI 777 (841)
Q Consensus 700 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~-~LYw~~~~~~~~~I~v~~l~g~-~~~~~ 777 (841)
...+ ...|-.. ..|.+|+|++.++ .||.++ ...++|.|+++... ..+.+
T Consensus 359 T~kv-------------------------v~~I~vg--~~P~gia~spDg~~~lyv~n--~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 359 TGER-------------------------INKIELG--HEIDSINVSQDAEPLLYALS--AGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TCCE-------------------------EEEEEEE--EEECEEEECCSSSCEEEEEE--TTTTEEEEEETTTCCEEEEE
T ss_pred CCeE-------------------------EEEEECC--CCcCeEEEccCCCEEEEEEc--CCCCeEEEEECCCCCEEEEe
Confidence 5441 1122111 2599999999999 999994 46899999998654 44444
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-09 Score=120.12 Aligned_cols=295 Identities=14% Similarity=0.148 Sum_probs=169.4
Q ss_pred cccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEE--eC------CCCCccceEEeee--
Q psy14257 238 TFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVV--QT------GLSTAEGLAVDWI-- 307 (841)
Q Consensus 238 ~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~--~~------~l~~p~giavD~~-- 307 (841)
...++.++.++..+.+|+|+.. ++ ||+++...++|++++..+|. ...+. .. +...+.|||+++.
T Consensus 16 gf~~~~~a~~l~~P~~~a~~pd-G~--l~V~e~~gg~I~~~~~~~g~---~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~ 89 (454)
T 1cru_A 16 NFDKKVILSNLNKPHALLWGPD-NQ--IWLTERATGKILRVNPESGS---VKTVFQVPEIVNDADGQNGLLGFAFHPDFK 89 (454)
T ss_dssp TSCEEEEECCCSSEEEEEECTT-SC--EEEEETTTCEEEEECTTTCC---EEEEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred CeEEEEEECCCCCceEEEEcCC-Cc--EEEEEcCCCEEEEEECCCCc---EeEEecCCccccccCCCCceeEEEECCCcC
Confidence 4567788888999999999876 56 99999877789998765443 22222 11 2344559999975
Q ss_pred -cCceeEEEeeecCCCCCC---CCCCEEEEccCCC-----ccccccc----cCcCCCceEEEEccCCEEEEEeCCCCeEE
Q psy14257 308 -GKNLYMFWAFWSLSPSNS---SDGGIEKAGMHGE-----NRSPLVT----KNIQWPSSLVIDYNQDILYWCDSHLNTVE 374 (841)
Q Consensus 308 -~~~~y~~~td~~~~~~~~---~~~~I~~~~~dG~-----~~~~l~~----~~~~~P~glavD~~~~~lYwaD~~~~~I~ 374 (841)
.+.+|++.+.......+. ...+|.|+..++. ..++++. ...+.+.+|+++++ ++||++-...+...
T Consensus 90 ~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD-G~Lyv~~Gd~~~~~ 168 (454)
T 1cru_A 90 NNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD-QKIYYTIGDQGRNQ 168 (454)
T ss_dssp TSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT-SCEEEEECCTTTTS
T ss_pred cCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC-CeEEEEECCCCCCC
Confidence 556676665421111011 1348999987542 2233332 24577999999986 47999854321100
Q ss_pred EEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCce----------EEEEecCCCC
Q psy14257 375 SVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF----------RRTLIAGDME 444 (841)
Q Consensus 375 ~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~----------~~~l~~~~l~ 444 (841)
.. ++. .+.. +...+..-...... .+...++|.+++.+|+. ...+...++.
T Consensus 169 ~~--~~~------------~~~~---~~~~p~~~~~~aq~---~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~R 228 (454)
T 1cru_A 169 LA--YLF------------LPNQ---AQHTPTQQELNGKD---YHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHR 228 (454)
T ss_dssp GG--GTT------------SCCC---TTCCCCHHHHHTTC---CTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCS
T ss_pred cc--ccc------------cccc---cccccccccccccC---CCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCC
Confidence 00 000 0000 00000000000000 01235789999999872 2334556889
Q ss_pred CceeEEEcCCCCeEEEEecCCC-CCeEEEecC---------CCC---------------------------C--------
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSK-APRIERCSM---------SGE---------------------------H-------- 479 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~-~~~I~r~~l---------dG~---------------------------~-------- 479 (841)
+|.||++|+ .|.||++|.+.. .-.|.++.. .|. .
T Consensus 229 Np~gla~dp-~G~L~~~d~g~~~~dein~i~~G~nYGWP~~~G~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~p~~ 307 (454)
T 1cru_A 229 NPQGLAFTP-NGKLLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVT 307 (454)
T ss_dssp EEEEEEECT-TSCEEEEEECSSSCEEEEECCTTCBCCTTTCSSSSSCSSCCEECGGGSSCTTCCCCCSTTSSCCTTCCEE
T ss_pred CcceEEECC-CCCEEEEecCCCCCeEEEEecCCCCCCCCceecCcccCccccccccccccccccccccCCcccCcccccc
Confidence 999999999 599999997631 112222221 110 0
Q ss_pred ------cE----EEEEe----------c--c-----cCCCCCCceeEEEecc--------CCEEEEEeCCCCeEEEEEcC
Q psy14257 480 ------RS----VIVRV----------D--L-----LTSRGAWPNGLTLDYQ--------LTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 480 ------~~----~i~~~----------~--~-----~~~~~~~P~glalD~~--------~~~LYw~d~~~~~I~~~~~d 524 (841)
+. -+... . . ....-..|.||++... .+.||+++...++|.++.++
T Consensus 308 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ap~G~~fy~g~~~~~~~~~g~lfv~~~~~~~i~~v~l~ 387 (454)
T 1cru_A 308 KESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIKLD 387 (454)
T ss_dssp CGGGCCCSSBCCCSEEECCCCTTCCSCCGGGTTCGGGGSSCCCBCCCEECCCCTTCCTTCTTEEEEEBSSSCCEEEEEEC
T ss_pred ccccccCCCcCCCceecccccccccccccccccccccccCccCcceeEEeCCCCccCcccCCcEEEeecCCCEEEEEEEC
Confidence 00 00000 0 0 0001235889998632 37899999999999999998
Q ss_pred C--Cee----EEEEcCCCCCCcceEEEEe-cCe-EEEEeCCCCeEEE
Q psy14257 525 G--KDH----HVVLSNHDSLTHPFAIALF-ENH-VYWTDWRTNSVIR 563 (841)
Q Consensus 525 G--~~~----~~i~~~~~~l~~P~gla~~-~~~-lY~td~~~~~i~~ 563 (841)
+ ... ..++. ...+|..|++. +|. ||+++...+.|++
T Consensus 388 ~~g~~~~~~~~~~~~---~~~R~~dv~~gpDG~~Lyv~~d~~G~i~~ 431 (454)
T 1cru_A 388 PTYSTTYDDAVPMFK---SNNRYRDVIASPDGNVLYVLTDTAGNVQK 431 (454)
T ss_dssp TTSSSEEEEEEEESC---CSSCEEEEEECTTSSCEEEEECSSCCEEC
T ss_pred CCCCeeeeeeeeecc---cCCCceeEEECCCCCEEEEEECCCCCCcc
Confidence 5 212 12222 24589999985 576 9999998888765
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=6.9e-09 Score=113.37 Aligned_cols=287 Identities=12% Similarity=0.116 Sum_probs=166.5
Q ss_pred eEEEecC----CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcc
Q psy14257 265 VFWTDVI----DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENR 340 (841)
Q Consensus 265 lyw~d~~----~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~ 340 (841)
||++|.. .+.|++++...+. .. ..+..+. .|. ++++|.++.+|+.-+...........+.|.+++......
T Consensus 47 vyV~~~~~~~~~~~V~ViD~~t~~--v~-~~I~vG~-~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v 121 (386)
T 3sjl_D 47 VYVNDPAHFAAVTQQFVIDGEAGR--VI-GMIDGGF-LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP 121 (386)
T ss_dssp EEEEECGGGCSSEEEEEEETTTTE--EE-EEEEECS-SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred EEEEcCcccCCCCEEEEEECCCCe--EE-EEEECCC-CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE
Confidence 9999886 6788888776543 22 2334444 575 999998877777532110000000123578887754332
Q ss_pred -ccccccC------cCCCceEEEEccCCEEEEEeCC-CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc
Q psy14257 341 -SPLVTKN------IQWPSSLVIDYNQDILYWCDSH-LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412 (841)
Q Consensus 341 -~~l~~~~------~~~P~glavD~~~~~lYwaD~~-~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~ 412 (841)
..+.... ...|.++++++++++||+++.. .+.|..+++........+.+... .+ +...+
T Consensus 122 ~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~--------~~P~g 188 (386)
T 3sjl_D 122 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YH--------IFPTA 188 (386)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EE--------EEEEE
T ss_pred EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ce--------eecCC
Confidence 2221111 2479999999999999999975 78999999876554333322100 00 00011
Q ss_pred ceEEEEecCCCcEEEEccC--CceEEEE--ecCCCCCcee--EEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 413 KNLYWVESNLDQIEVAKLS--GQFRRTL--IAGDMESPRA--IALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~--G~~~~~l--~~~~l~~P~g--iavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
.+.|++....+++.+.++. |+...+. ....-..|.. .+++...|.++|... .++|+.+++.+...+++...
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~---~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY---TGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---TSEEEEEECTTSSCEECCCE
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---CCEEEEEECCCCcceeecce
Confidence 2233333334444444443 2221111 0001123333 366656676666543 46899999987766554321
Q ss_pred cccC----CCCCCcee---EEEeccCCEEEEEeC---------CCCeEEEEEcCCCee-EEEEcCCCCCCcceEEEEe-c
Q psy14257 487 DLLT----SRGAWPNG---LTLDYQLTRIYWIDA---------KSDSIHTVTYDGKDH-HVVLSNHDSLTHPFAIALF-E 548 (841)
Q Consensus 487 ~~~~----~~~~~P~g---lalD~~~~~LYw~d~---------~~~~I~~~~~dG~~~-~~i~~~~~~l~~P~gla~~-~ 548 (841)
.+.. ..-..|.| +++++..++||++.. ..++|..+|+....+ +.+... ..|.+|++. +
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D 341 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQD 341 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSS
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCC
Confidence 1000 01112444 888999999999863 236899999976544 333322 367899993 3
Q ss_pred C--eEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 549 N--HVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 549 ~--~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
+ +||.+++..+.|..++..+++.+..+.
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 3 689999999999999988888666554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.1e-09 Score=107.41 Aligned_cols=199 Identities=13% Similarity=0.015 Sum_probs=137.0
Q ss_pred CCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEE
Q psy14257 349 QWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIE 426 (841)
Q Consensus 349 ~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~ 426 (841)
.+|.||+++.+ ++||++.. ..++|.++++........+.+.. .+. ++.+.+.+++||++.+..+.+.
T Consensus 21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~--~~f--------geGi~~~g~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDD--SYF--------GEGLTLLNEKLYQVVWLKNIGF 89 (266)
T ss_dssp CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCT--TCC--------EEEEEEETTEEEEEETTCSEEE
T ss_pred CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCC--Ccc--------eEEEEEeCCEEEEEEecCCEEE
Confidence 36899999976 79999975 47899999997655443332211 111 1234455689999999999999
Q ss_pred EEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccC
Q psy14257 427 VAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQL 505 (841)
Q Consensus 427 v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~ 505 (841)
+++.+. +...++-. + .|.|+.+.++.++||+++ + .++|...+.+.......+..+.....+..|++|++. +
T Consensus 90 viD~~t~~v~~~i~~-g--~~~g~glt~Dg~~l~vs~-g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--d 161 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTH-Q--MKDGWGLATDGKILYGSD-G--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--N 161 (266)
T ss_dssp EEETTTTEEEEEEEC-C--SSSCCEEEECSSSEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T
T ss_pred EEECCCCcEEEEEEC-C--CCCeEEEEECCCEEEEEC-C--CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--C
Confidence 999874 44444432 2 355555666678999998 5 579999998765433333321111245578999987 5
Q ss_pred CEEEEEeCCCCeEEEEEcCCCe-eEEEEcCC----------CCCCcceEEEEe--cCeEEEEeCCCCeEEEEec
Q psy14257 506 TRIYWIDAKSDSIHTVTYDGKD-HHVVLSNH----------DSLTHPFAIALF--ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 506 ~~LYw~d~~~~~I~~~~~dG~~-~~~i~~~~----------~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~ 566 (841)
++||+.....+.|.++|+.... ...+-... .....|.||++. ++++|+|....+.|+.++.
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 7999999889999999996544 44443211 112467999996 3689999988888887764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-09 Score=106.96 Aligned_cols=204 Identities=12% Similarity=0.015 Sum_probs=137.6
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-CCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEE
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 375 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~ 375 (841)
..|.||++++. +.+|+ +.- ....++|.++++. |+....+.......+.|++++ +++||+++...+.|.+
T Consensus 21 ~f~~Gl~~~~d-g~Lyv--stg-----~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 21 AFTQGLVYAEN-DTLFE--STG-----LYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp CCEEEEEECST-TEEEE--EEC-----STTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred CCcccEEEeCC-CeEEE--ECC-----CCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEE
Confidence 36899999864 34444 421 1123589999876 554444433344455677776 6899999999999999
Q ss_pred EEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCce-EEEEecC----CCCCceeEE
Q psy14257 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF-RRTLIAG----DMESPRAIA 450 (841)
Q Consensus 376 ~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~----~l~~P~gia 450 (841)
++.+......-+... .+.+ .++.+.+++||+++ +.++|.+++..... .+.+... .+..|++++
T Consensus 91 iD~~t~~v~~~i~~g---~~~g--------~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ---MKDG--------WGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EETTTTEEEEEEECC---SSSC--------CEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EECCCCcEEEEEECC---CCCe--------EEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 998744332222221 1222 23445568999999 68899999987643 3333221 244688998
Q ss_pred EcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec-cc-------CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD-LL-------TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 451 vd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~-~~-------~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
+. +|+||.+.|. .+.|.++++........+... +. ......|+|||+|+.+++||++....++|+.++
T Consensus 159 ~~--dg~lyvn~~~--~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 159 YI--NGEVWANIWQ--TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EE--TTEEEEEETT--SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred EE--CCEEEEecCC--CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 87 5899999988 789999999654443444321 10 012357899999999999999999999999998
Q ss_pred cCCC
Q psy14257 523 YDGK 526 (841)
Q Consensus 523 ~dG~ 526 (841)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-08 Score=110.74 Aligned_cols=335 Identities=9% Similarity=0.053 Sum_probs=204.4
Q ss_pred eEEecc--CccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEe--cCCcccceEEEEeCCCC
Q psy14257 222 FVIFSN--RHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATL--IGNSLSNIDVVVQTGLS 297 (841)
Q Consensus 222 ~ll~s~--~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~--~~~~~~~~~~~~~~~l~ 297 (841)
.+++++ .+.|..++.........+.....+.++.|....+. ||.++.. +.|...++ ..+. ...+ +.. -.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~--l~v~~~d-~~V~v~D~~~~t~~--~~~~-i~~-g~ 222 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRY--LLVIGRD-ARIDMIDLWAKEPT--KVAE-IKI-GI 222 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCE--EEEEETT-SEEEEEETTSSSCE--EEEE-EEC-CS
T ss_pred EEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCE--EEEECCC-CeEEEEECcCCCCc--EEEE-Eec-CC
Confidence 445554 35677777776655444442223667777776555 9998866 89999988 4432 2222 333 34
Q ss_pred CccceEEee----ecCceeEEEeeecCCCCCCCCCCEEEEccCC-CccccccccC----------cCCCceEEEEccCCE
Q psy14257 298 TAEGLAVDW----IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG-ENRSPLVTKN----------IQWPSSLVIDYNQDI 362 (841)
Q Consensus 298 ~p~giavD~----~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG-~~~~~l~~~~----------~~~P~glavD~~~~~ 362 (841)
.|+++++++ .++.+|+ +.. .++.|..++... +.+..+.... -.++.+|++.+.+++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v--~~~-------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIA--GAY-------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEE--EEE-------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred CcceEEeCCCcCCCCCEEEE--EEc-------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 799999998 7766655 322 124666665432 2222221111 125778999999999
Q ss_pred EEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCce-EEEEecC
Q psy14257 363 LYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF-RRTLIAG 441 (841)
Q Consensus 363 lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~ 441 (841)
+|++....++|..+++.......+..... .... ..++++..++.||++....+.|.+.++.... ..++-..
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~--~~~~------~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDNLTVTSIGA--APFL------HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSSCEEEEEEC--CSSC------CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EEEEECCCCeEEEEEecCCCcceeEEecc--CcCc------cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 99999999999999986543222211111 0111 1124455567799998888999999986543 3333322
Q ss_pred CCCCc-eeEE-EcCCCCeEEEEecCCCCCeEEEecCCCCC-----cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC
Q psy14257 442 DMESP-RAIA-LDPRFGLLFWTDWDSKAPRIERCSMSGEH-----RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK 514 (841)
Q Consensus 442 ~l~~P-~gia-vd~~~g~Ly~td~~~~~~~I~r~~ldG~~-----~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~ 514 (841)
...+| +++. ++|..|.+|.+... ....|...+++... .+++.... ..-..+..+++.+.+++||+....
T Consensus 366 ~~ph~g~g~~~~~p~~g~~~~s~~~-~d~~V~v~d~~~~~~~~~~~~~v~~l~---~~g~~~~~v~~~pdg~~l~v~~~~ 441 (543)
T 1nir_A 366 KTPHPGRGANFVHPKYGPVWSTSHL-GDGSISLIGTDPKNHPQYAWKKVAELQ---GQGGGSLFIKTHPKSSHLYVDTTF 441 (543)
T ss_dssp SSBCCTTCEEEEETTTEEEEEEEBS-SSSEEEEEECCTTTCTTTBTSEEEEEE---CSCSCCCCEECCTTCCEEEECCTT
T ss_pred CCCCCCCCcccCCCCCccEEEeccC-CCceEEEEEeCCCCCchhcCeEEEEEE---cCCCCceEEEcCCCCCcEEEecCC
Confidence 22344 3554 47777999988752 15678888776411 22222211 222456779999887888765421
Q ss_pred ------CCeEEEEEcCCCeeE-EEEc--C----CCCCCcceEEEE--ecCeEEEEeC----CCCeEEEEeccCCcceEEE
Q psy14257 515 ------SDSIHTVTYDGKDHH-VVLS--N----HDSLTHPFAIAL--FENHVYWTDW----RTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 515 ------~~~I~~~~~dG~~~~-~i~~--~----~~~l~~P~gla~--~~~~lY~td~----~~~~i~~~~~~~g~~~~~i 575 (841)
.+.|..++.+...+. .++. . .+....+..+++ .+.+||++.| ..+.|..++..+++....+
T Consensus 442 ~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 442 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence 459999998754332 2220 0 111356777777 4678999988 3588999998888877777
Q ss_pred e-cccCCCce
Q psy14257 576 Q-RTLTQPFI 584 (841)
Q Consensus 576 ~-~~~~~p~~ 584 (841)
. ..+..|.|
T Consensus 522 ~~~~~~~p~g 531 (543)
T 1nir_A 522 KDPRLITPTG 531 (543)
T ss_dssp CCTTCCSEEE
T ss_pred cCCCccCCCe
Confidence 5 34566766
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-07 Score=99.85 Aligned_cols=301 Identities=8% Similarity=0.017 Sum_probs=170.0
Q ss_pred ceEEEEec-CCC---cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC-------CCCCeEEEecCCCCCcE
Q psy14257 413 KNLYWVES-NLD---QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD-------SKAPRIERCSMSGEHRS 481 (841)
Q Consensus 413 ~~LY~tD~-~~~---~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~-------~~~~~I~r~~ldG~~~~ 481 (841)
+.+|++|. ..+ .|.+++++.......+..+ ..| +|+++|++++||+++.. .....|..++.......
T Consensus 33 ~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~ 110 (373)
T 2mad_H 33 RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI 110 (373)
T ss_pred CEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE
Confidence 77999997 554 7888888643332223333 468 99999999999999842 12456888877522221
Q ss_pred EEEEec--ccCCCCCCceeEEEeccCCEEEEEeCC-CCeEEEEEcCCCeeEEE-EcCCCCCCcceEEEE--ecCeEEEEe
Q psy14257 482 VIVRVD--LLTSRGAWPNGLTLDYQLTRIYWIDAK-SDSIHTVTYDGKDHHVV-LSNHDSLTHPFAIAL--FENHVYWTD 555 (841)
Q Consensus 482 ~i~~~~--~~~~~~~~P~glalD~~~~~LYw~d~~-~~~I~~~~~dG~~~~~i-~~~~~~l~~P~gla~--~~~~lY~td 555 (841)
..+... ........|.++++++++++||++... .+.|..+| +....... + ..|..+.+ .+.+.|++.
T Consensus 111 ~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i------~~~~~~~~~~~~~~~~~~~ 183 (373)
T 2mad_H 111 ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL------SSPTCYHIHPGAPSTFYLL 183 (373)
T ss_pred EEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc------CCCceEEEEeCCCceEEEE
Confidence 111110 000012579999999999999999865 68899999 65433211 2 22223333 456789999
Q ss_pred CCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccC
Q psy14257 556 WRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVAD 635 (841)
Q Consensus 556 ~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~ 635 (841)
+..+++..++. +|+....+......+ + ..|...+| ....++
T Consensus 184 ~~dg~~~~vd~-~g~~~~~~~~~~~~~-~--~~p~~~~~----------------------------~~~~~~------- 224 (373)
T 2mad_H 184 CAQGGLAKTDH-AGGAAGAGLVGAMLT-A--AQNLLTQP----------------------------AQANKS------- 224 (373)
T ss_pred cCCCCEEEEEC-CCcEEEEEecccccc-C--Ccceeecc----------------------------eeEecC-------
Confidence 88899888887 666543221000000 0 00000000 000110
Q ss_pred ceeEEeecCCeEEEEecCCCCccccceeec------CCCCC---ceEEEEecCCCEEEEEEC---------CCCeEEEEE
Q psy14257 636 SQFIIFSRPREIRGVDLEHPYYHTIPTISI------PQVFS---PNNLNFDAANKKIYWTDQ---------EYNEVKRSS 697 (841)
Q Consensus 636 ~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~------~~~~~---~~~v~~d~~~~~iyw~d~---------~~~~I~~~~ 697 (841)
..+++++....+..+++..........+++ ..... ...+++++.++++|++.. ..++|..++
T Consensus 225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID 304 (373)
T 2mad_H 225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence 112222333344444443221110001110 00011 233788999999999864 235788888
Q ss_pred cccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCC-cEEEEecCCCCCeEEEEecCCc-ceE
Q psy14257 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQ-NMFIAVSSPTQSKIVVCNLEGE-YQT 775 (841)
Q Consensus 698 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~-~LYw~~~~~~~~~I~v~~l~g~-~~~ 775 (841)
+....+ ...| . .-..|.+|++++.++ .||.+ ....++|.|+++... ..+
T Consensus 305 ~~t~~v-------------------------v~~i-~-~g~~p~~i~~s~Dg~~~l~v~--~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 305 GLVGQT-------------------------SSQI-S-LGHDVDAISVAQDGGPDLYAL--SAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred CCCCEE-------------------------EEEE-E-CCCCcCeEEECCCCCeEEEEE--cCCCCeEEEEECCCCCEEe
Confidence 765440 1233 2 123699999999999 78888 445789999998754 444
Q ss_pred EEEcCCCCCCCcCCCceEEEEe
Q psy14257 776 TILSNESNDTSTLSKISSIAVW 797 (841)
Q Consensus 776 ~~~~~~~~~~~~l~~p~~iavd 797 (841)
.++.- -..|.+|.+.
T Consensus 356 ~i~~v-------G~~P~~~~~~ 370 (373)
T 2mad_H 356 STVEL-------GSGPQVLSVM 370 (373)
T ss_pred eecCC-------CCCCcEEEEc
Confidence 43432 2578888763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-07 Score=101.58 Aligned_cols=310 Identities=10% Similarity=0.079 Sum_probs=173.8
Q ss_pred ccccceEEEEecC----CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC-------CCCCeEEEecCCC
Q psy14257 409 LWIGKNLYWVESN----LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD-------SKAPRIERCSMSG 477 (841)
Q Consensus 409 dw~~~~LY~tD~~----~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~-------~~~~~I~r~~ldG 477 (841)
.+.++.||++|.. .++|.+++.+.......+..+ ..|. |+++|+..+||++++. .....|...+...
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 3456899999986 679999998754433333333 4585 9999999999999842 1135688887764
Q ss_pred CCcEEEEEecccC--CCCCCceeEEEeccCCEEEEEeCC-CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEE
Q psy14257 478 EHRSVIVRVDLLT--SRGAWPNGLTLDYQLTRIYWIDAK-SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWT 554 (841)
Q Consensus 478 ~~~~~i~~~~~~~--~~~~~P~glalD~~~~~LYw~d~~-~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~t 554 (841)
.....-+...... .....|.++++++++++||+++.. .+.|..+|+....+..-+.. ....++.-.+.+.|++
T Consensus 119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~g~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----PDCYHIFPTAPDTFFM 194 (386)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSEEEEEEEETTEEEE
T ss_pred CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----CCcceeecCCCceeEE
Confidence 3322222210000 013479999999999999999864 68999999987654332221 1112232233444445
Q ss_pred eCCCCeEEEEeccC-CcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccc
Q psy14257 555 DWRTNSVIRANKWN-GSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633 (841)
Q Consensus 555 d~~~~~i~~~~~~~-g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~ 633 (841)
....+++..++..+ ++.. . .. ..++..-..|...|+ .+..
T Consensus 195 ~~~DG~~~~v~~~~~g~v~-~-~~--~~~~~~~~~~~~~~~----------------------------~~~~------- 235 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPE-I-TH--TEVFHPEDEFLINHP----------------------------AYSQ------- 235 (386)
T ss_dssp EETTSCEEEEECCSSSCCE-E-EE--CCCCSCTTSCBCSCC----------------------------EEET-------
T ss_pred ECCCCCEEEEECCCCCeEE-E-ee--cceeccccccccccc----------------------------eeEc-------
Confidence 44455555554432 2221 1 10 001000000100000 0110
Q ss_pred cCceeEEeecCCeEEEEecCCCCccccceeec-------CC--CCCceEEEEecCCCEEEEEECC---------CCeEEE
Q psy14257 634 ADSQFIIFSRPREIRGVDLEHPYYHTIPTISI-------PQ--VFSPNNLNFDAANKKIYWTDQE---------YNEVKR 695 (841)
Q Consensus 634 ~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~-------~~--~~~~~~v~~d~~~~~iyw~d~~---------~~~I~~ 695 (841)
....+++++....++.+++..........+.+ .. ......+++++..+++|++... .++|..
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 11223445555566666665433221111110 00 0112347779999999998631 357888
Q ss_pred EEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCC-cEEEEecCCCCCeEEEEecCCcce
Q psy14257 696 SSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQ-NMFIAVSSPTQSKIVVCNLEGEYQ 774 (841)
Q Consensus 696 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~-~LYw~~~~~~~~~I~v~~l~g~~~ 774 (841)
+++....+ ...|... ..|.+|||+..++ .||.++ ...+.|.|++......
T Consensus 316 iD~~t~kv-------------------------~~~i~vg--~~~~~lavs~D~~~~ly~tn--~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 316 LDAKTGER-------------------------LAKFEMG--HEIDSINVSQDEKPLLYALS--TGDKTLYIHDAESGEE 366 (386)
T ss_dssp EETTTCCE-------------------------EEEEEEE--EEECEEEECSSSSCEEEEEE--TTTTEEEEEETTTCCE
T ss_pred EECCCCeE-------------------------EEEEECC--CCcceEEECCCCCeEEEEEc--CCCCeEEEEECCCCcE
Confidence 88866551 1122111 2588999999987 789884 5688999998864333
Q ss_pred EEEEcCCCCCCCcCCCceEEEEeCC
Q psy14257 775 TTILSNESNDTSTLSKISSIAVWPV 799 (841)
Q Consensus 775 ~~~~~~~~~~~~~l~~p~~iavd~~ 799 (841)
..-+.. ..+|..|++.+.
T Consensus 367 ~~~i~~-------~~~p~~l~~s~d 384 (386)
T 3sjl_D 367 LRSVNQ-------LGHGPQVITTAD 384 (386)
T ss_dssp EEEECC-------CCSSCCEEEECC
T ss_pred EEEecC-------CCCCceeEECCc
Confidence 222333 578998888765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-09 Score=109.71 Aligned_cols=208 Identities=12% Similarity=0.059 Sum_probs=136.3
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc----ccceEEE-Eec-
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW----IGKNLYW-VES- 420 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw----~~~~LY~-tD~- 420 (841)
.-..|+++++|..++++|+++...++|.++++++...+.+ ....+.++ |-+...+..+.| -.++|++ ++.
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~---g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSN---GDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCS---SCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcccc---CCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3457999999999999999999999999999986655444 22111100 000000112222 2377887 552
Q ss_pred -----------CCCcEEEEccC----CceEEEE-ec----C-------CCCCceeEEEcCCCCeEEEEecCCCC-CeEEE
Q psy14257 421 -----------NLDQIEVAKLS----GQFRRTL-IA----G-------DMESPRAIALDPRFGLLFWTDWDSKA-PRIER 472 (841)
Q Consensus 421 -----------~~~~I~v~~~~----G~~~~~l-~~----~-------~l~~P~giavd~~~g~Ly~td~~~~~-~~I~r 472 (841)
+...+.+++++ |+....+ +. + ....|++||+|+. |..|+++.. . +.|+|
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-GnaYVt~s~--~~~~I~r 163 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-GNSYVAFAL--GMPAIAR 163 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-SCEEEEEEE--SSCEEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-CCEEEeCCC--CCCeEEE
Confidence 34678899988 5443222 11 1 2235899999975 999999976 6 89999
Q ss_pred ecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEE-Ec--C-CCCCCcceEE-EE-
Q psy14257 473 CSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVV-LS--N-HDSLTHPFAI-AL- 546 (841)
Q Consensus 473 ~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i-~~--~-~~~l~~P~gl-a~- 546 (841)
++.||+....+............|+||++++.+..|++++. .++|.++++....+..+ .. + ...+..|.+| ++
T Consensus 164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~ 242 (334)
T 2p9w_A 164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVP 242 (334)
T ss_dssp ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEE
T ss_pred EeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccc
Confidence 99999965555431100123345889999998899999999 89999999984322012 11 1 1246778896 55
Q ss_pred ecCeE-EEEeCCCCeEE
Q psy14257 547 FENHV-YWTDWRTNSVI 562 (841)
Q Consensus 547 ~~~~l-Y~td~~~~~i~ 562 (841)
.+|.+ |+++...+.+.
T Consensus 243 ~~G~vllV~~~~~~~~~ 259 (334)
T 2p9w_A 243 VGNESVLVGARAPYAIS 259 (334)
T ss_dssp ETTEEEEEEEETTEEEE
T ss_pred cCCEEEEEEcCCCCEEE
Confidence 57776 99987655443
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-11 Score=102.95 Aligned_cols=80 Identities=29% Similarity=0.624 Sum_probs=69.2
Q ss_pred ccccccCCCC-CCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEee--cCCeeecCCC
Q psy14257 132 DEKQCLRSDC-HHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTC--HAGYELEPDM 208 (841)
Q Consensus 132 ~eC~~~~~~C-~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C--~~G~~l~~d~ 208 (841)
+||...+..| .+.|.+++++|+|.|++||.+.++++.|++++||. .++|.+.|.++ .++|+|.| ..||.+..+.
T Consensus 4 deC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~-~~~C~~~C~n~--~g~y~C~C~g~~G~~~~~~~ 80 (87)
T 1z6c_A 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS-ENMCAQLCVNY--PGGYTCYCDGKKGFKLAQDQ 80 (87)
T ss_dssp CSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHH-HSCCSSEECCC--SSSCCEECCSSSCCBCCTTS
T ss_pred ccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeC-CCCCCCEEEcc--CCCEEEECCCCcCCcccCCC
Confidence 4676555557 45899999999999999999988999999999995 46799999999 99999999 6899998888
Q ss_pred CceEeC
Q psy14257 209 FTCKSK 214 (841)
Q Consensus 209 ~~C~~~ 214 (841)
..|.++
T Consensus 81 ~~C~di 86 (87)
T 1z6c_A 81 KSCEVV 86 (87)
T ss_dssp SSCBCC
T ss_pred CcceEC
Confidence 888765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-07 Score=103.04 Aligned_cols=305 Identities=12% Similarity=0.039 Sum_probs=166.6
Q ss_pred cceEEEEecC-----CCcEEEEccC-CceEEEEecCCCCCceeEEEcCCCCeEEEEec-------CCCCCeEEEecCCCC
Q psy14257 412 GKNLYWVESN-----LDQIEVAKLS-GQFRRTLIAGDMESPRAIALDPRFGLLFWTDW-------DSKAPRIERCSMSGE 478 (841)
Q Consensus 412 ~~~LY~tD~~-----~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~-------~~~~~~I~r~~ldG~ 478 (841)
.+.+|+++.. .+.|.+++.. |+...++- .+ ..| +|+++|++++||+++. +.....|...++...
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~-~g-~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP-TA-FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE-CC-EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEEEec-CC-CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 3789999864 3578888865 44444433 23 468 9999999999999974 111346888877532
Q ss_pred Cc-EEEEEecccCCCCCCceeEEEeccCCEEEEEeCC-CCeEEEEEcCCCeeEEE-EcCCCCCCcceEEEEe--cCeEEE
Q psy14257 479 HR-SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK-SDSIHTVTYDGKDHHVV-LSNHDSLTHPFAIALF--ENHVYW 553 (841)
Q Consensus 479 ~~-~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~-~~~I~~~~~dG~~~~~i-~~~~~~l~~P~gla~~--~~~lY~ 553 (841)
.. ..+............|.+|++++++++||+++.. .+.|..++++....... +. .....++.++ +...|+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~----~~~~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA----AAGCWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG----GTTEEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec----CCCcceeEEcCCCCeeEE
Confidence 22 2221100000123579999999999999999875 68999999986533222 21 1122233332 234555
Q ss_pred EeCCCCeEEEEeccC-CcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 554 TDWRTNSVIRANKWN-GSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 554 td~~~~~i~~~~~~~-g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
+....+++..+.... |+....... ... ++ ....|-.. ...+++
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~--~~~--~~---~~~~~~~~-------------------------~~~~~g---- 211 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRS--KQM--FS---VKDDPIFI-------------------------APALDK---- 211 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEEC--CCC--SC---TTTSCBCS-------------------------CCEECS----
T ss_pred EECCCCcEEEEEECCCCcEeeeccc--cce--Ec---CCCCceEE-------------------------EecccC----
Confidence 555555555444322 322211110 000 00 00000000 001111
Q ss_pred ccCceeEEeecCCeEEEEecCCCCccccceeecCC------C---CCceEEEEecCCCEEEEEEC----------CCCeE
Q psy14257 633 VADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQ------V---FSPNNLNFDAANKKIYWTDQ----------EYNEV 693 (841)
Q Consensus 633 ~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~------~---~~~~~v~~d~~~~~iyw~d~----------~~~~I 693 (841)
...++++....+..+++..........+++.. . ..+..++|++..+++|++.. ..++|
T Consensus 212 ---~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v 288 (361)
T 2oiz_A 212 ---DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEI 288 (361)
T ss_dssp ---SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEE
T ss_pred ---CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceE
Confidence 11222333344555554322111111111000 0 11223789999999999864 13578
Q ss_pred EEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc-
Q psy14257 694 KRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE- 772 (841)
Q Consensus 694 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~- 772 (841)
..+++.... ...-+..+- |.+|||++.++.||.+ +. ++|.++++...
T Consensus 289 ~viD~~t~~--------------------------~v~~i~~~~--p~~ia~spdg~~l~v~--n~--~~v~v~D~~t~~ 336 (361)
T 2oiz_A 289 WVMDTKTKQ--------------------------RVARIPGRD--ALSMTIDQQRNLMLTL--DG--GNVNVYDISQPE 336 (361)
T ss_dssp EEEETTTTE--------------------------EEEEEECTT--CCEEEEETTTTEEEEE--CS--SCEEEEECSSSS
T ss_pred EEEECCCCc--------------------------EEEEEecCC--eeEEEECCCCCEEEEe--CC--CeEEEEECCCCc
Confidence 888876544 111222232 9999999999999999 32 89999987654
Q ss_pred -c-eEEEEcCCCCCCCcCCCceEEEEeCCCC
Q psy14257 773 -Y-QTTILSNESNDTSTLSKISSIAVWPVKG 801 (841)
Q Consensus 773 -~-~~~~~~~~~~~~~~l~~p~~iavd~~~g 801 (841)
. .+.+... -..|++|+++|..+
T Consensus 337 l~~~~~i~~~-------G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 337 PKLLRTIEGA-------AEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEEETTS-------CSSEEEEEECCCSC
T ss_pred ceeeEEeccC-------CCCcEEEEecCCCC
Confidence 2 2333232 36999999999754
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.6e-11 Score=100.71 Aligned_cols=78 Identities=28% Similarity=0.644 Sum_probs=65.8
Q ss_pred ccccccCCCCCC-CcccCCCCcEEecCCCceec-CCCCccccccccC-CCCCcc-CceeecCCCCceEEeecCCeeecCC
Q psy14257 132 DEKQCLRSDCHH-DCYNTPEGFMCVCPRDMYLQ-PDLITCSYLHPCE-AWGTCS-QDCEPSVSNNSYKCTCHAGYELEPD 207 (841)
Q Consensus 132 ~eC~~~~~~C~~-~C~~~~g~~~C~C~~Gy~l~-~d~~~C~~~~eC~-~~~~Cs-~~C~~~~~~g~~~C~C~~G~~l~~d 207 (841)
+||...+..|.+ .|.|++++|+|.|++||.+. .+++.|++++||. .+..|. +.|.++ .++|+|.|++||.+..+
T Consensus 4 deC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~--~g~y~C~C~~G~~~~~~ 81 (86)
T 1lmj_A 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNT--EGSYRCECPPGHQLSPN 81 (86)
T ss_dssp CTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEE--TTEEEEESCTTSCCCSS
T ss_pred ccccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcC--CCCEEEECcCCcccCCC
Confidence 567655566864 89999999999999999875 3588999999996 445675 589999 99999999999999888
Q ss_pred CCce
Q psy14257 208 MFTC 211 (841)
Q Consensus 208 ~~~C 211 (841)
+++|
T Consensus 82 ~~~C 85 (86)
T 1lmj_A 82 ISAC 85 (86)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.5e-08 Score=103.09 Aligned_cols=270 Identities=8% Similarity=-0.036 Sum_probs=163.0
Q ss_pred CccccccccccccEEEEecccc---ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCC-----CCc
Q psy14257 228 RHELRGVDLRTFNVIALISSLK---NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGL-----STA 299 (841)
Q Consensus 228 ~~~I~~~~~~~~~~~~l~~~~~---~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l-----~~p 299 (841)
...|+.+++........+.... .+..+.|....+. ||+++...+.|.+.++.++. .... +..+. ..|
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~v~~~~~~~v~~~d~~~~~--~~~~-~~~~~~~~~~~~~ 84 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI--AYATVNKSESLVKIDLVTGE--TLGR-IDLSTPEERVKSL 84 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE--EEEEETTTTEEEEEETTTCC--EEEE-EECCBTTEEEECT
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE--EEEEeCCCCeEEEEECCCCC--eEee-EEcCCcccccccc
Confidence 4566667776654433333222 4667777765444 99999888999999887654 2222 22211 168
Q ss_pred cceEEeeecCceeEEEeeecCCCCCC--CCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 300 EGLAVDWIGKNLYMFWAFWSLSPSNS--SDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 300 ~giavD~~~~~~y~~~td~~~~~~~~--~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
.++++++.++.+|+.-...+..+... .++.|..+++++......+.. -..|.++++++++++||++ .+.|..++
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEE
Confidence 89999987655554321110000001 246899998875433322222 3468999999999999999 47799999
Q ss_pred ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC-----------------------cEEEEccCCce
Q psy14257 378 VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD-----------------------QIEVAKLSGQF 434 (841)
Q Consensus 378 ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~-----------------------~I~v~~~~G~~ 434 (841)
+.+......+..... +. +.++...+..||++....+ .|.++++....
T Consensus 161 ~~~~~~~~~~~~~~~--~~--------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 161 PEAGTLVEDKPIQSW--EA--------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp TTTTEEEEEECSTTT--TT--------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred CCCCcEeeeeecccc--CC--------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 876554332221110 01 1122222333444332222 46677776543
Q ss_pred EEEE-ecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 435 RRTL-IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 435 ~~~l-~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
...+ .......|.+++++|...+||.++ ..|...+++.......+. .-..|.++++++.+++||++ .
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~v~~~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~-~ 298 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVP------LPHSYYSVNVSTDGSTVWLG-G 298 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEE------CSSCCCEEEECTTSCEEEEE-S
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEeC-----CeEEEEECCCCcCcceec------CCCceeeEEECCCCCEEEEE-c
Confidence 3221 222335789999999988999883 578888886543333333 23568999999888889988 4
Q ss_pred CCCeEEEEEcCCCee
Q psy14257 514 KSDSIHTVTYDGKDH 528 (841)
Q Consensus 514 ~~~~I~~~~~dG~~~ 528 (841)
..+.|..+++.....
T Consensus 299 ~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 299 ALGDLAAYDAETLEK 313 (337)
T ss_dssp BSSEEEEEETTTCCE
T ss_pred CCCcEEEEECcCCcE
Confidence 478999999875443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-07 Score=96.06 Aligned_cols=277 Identities=8% Similarity=-0.005 Sum_probs=165.4
Q ss_pred eEEEEecCCCcEEEEccCCc-eEEEEecCCCC-CceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 414 NLYWVESNLDQIEVAKLSGQ-FRRTLIAGDME-SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~-~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
.++++....+.|.+.++... ....+...... .|.+++++|.+++||++... .+.|...++........+.. .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~----~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGRIDL----S 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEEEEC----C
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC--CCeEEEEECCCCCeEeeEEc----C
Confidence 35666667788888887643 33333322211 59999999998899999876 67899999865443333331 1
Q ss_pred C----CCCceeEEEeccCCEEEEEeC-----------CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEE
Q psy14257 492 R----GAWPNGLTLDYQLTRIYWIDA-----------KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWT 554 (841)
Q Consensus 492 ~----~~~P~glalD~~~~~LYw~d~-----------~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~t 554 (841)
. ...|.++++++.+++||+++. ..+.|..+++++......+... ..|.++++. +.+||++
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL 152 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe
Confidence 1 126889999988889999962 2579999999876544333332 357788874 4569998
Q ss_pred eCCCCeEEEEeccCCcceEEEeccc-CCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccc
Q psy14257 555 DWRTNSVIRANKWNGSDVTLIQRTL-TQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633 (841)
Q Consensus 555 d~~~~~i~~~~~~~g~~~~~i~~~~-~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~ 633 (841)
++.|..++..+++....+.... ..|.. ..+.+ ..|.....
T Consensus 153 ---~~~i~~~d~~~~~~~~~~~~~~~~~~~~-----------------------~s~dg---------~~l~~~~~---- 193 (337)
T 1pby_B 153 ---GRDLHVMDPEAGTLVEDKPIQSWEAETY-----------------------AQPDV---------LAVWNQHE---- 193 (337)
T ss_dssp ---SSSEEEEETTTTEEEEEECSTTTTTTTB-----------------------CCCBC---------CCCCCCCT----
T ss_pred ---CCeEEEEECCCCcEeeeeeccccCCCce-----------------------eCCCc---------cEEeeecc----
Confidence 4678888877665443332110 00100 00111 11100000
Q ss_pred cCce----eEEe----------ecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcc
Q psy14257 634 ADSQ----FIIF----------SRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIV 699 (841)
Q Consensus 634 ~~~~----~l~~----------~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~ 699 (841)
.... +... .....|+.+++........... .....+.+++|++..+.||.++ +.|+.+++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~---~~v~~~d~~ 268 (337)
T 1pby_B 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR--IMDVFYFSTAVNPAKTRAFGAY---NVLESFDLE 268 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE--ECSSCEEEEEECTTSSEEEEEE---SEEEEEETT
T ss_pred CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC--CCCCceeeEEECCCCCEEEEeC---CeEEEEECC
Confidence 0000 0000 0011455566544322211111 1124577899999999999984 789999887
Q ss_pred cCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcc
Q psy14257 700 GGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773 (841)
Q Consensus 700 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~ 773 (841)
+.. ....+. .-..|.++++++.++.||.+ . ..+.|.++++....
T Consensus 269 ~~~--------------------------~~~~~~-~~~~~~~~~~s~dg~~l~~~--~-~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 269 KNA--------------------------SIKRVP-LPHSYYSVNVSTDGSTVWLG--G-ALGDLAAYDAETLE 312 (337)
T ss_dssp TTE--------------------------EEEEEE-CSSCCCEEEECTTSCEEEEE--S-BSSEEEEEETTTCC
T ss_pred CCc--------------------------Ccceec-CCCceeeEEECCCCCEEEEE--c-CCCcEEEEECcCCc
Confidence 644 212222 22468999999999999998 2 36889999987543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=8.9e-08 Score=104.94 Aligned_cols=295 Identities=11% Similarity=0.070 Sum_probs=166.5
Q ss_pred eEEEecC-----CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCC-C
Q psy14257 265 VFWTDVI-----DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG-E 338 (841)
Q Consensus 265 lyw~d~~-----~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG-~ 338 (841)
+|.+|.. .+.|++++...+.+ ...+..+ ..| ++++++.++.+|+.-...........++.|..++... +
T Consensus 18 ~yv~~~~~~~~~d~~v~v~D~~t~~~---~~~i~~g-~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 18 IYVMDSVFMHLTESRVHVYDYTNGKF---LGMVPTA-FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp EEEEECCGGGGGGCEEEEEETTTCCE---EEEEECC-EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred EEEECCCCCccccCeEEEEECCCCeE---EEEecCC-CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 7777643 35667776554431 1223333 367 9999998877776432111100001134588887653 2
Q ss_pred cccccccc-----CcCCCceEEEEccCCEEEEEeCC-CCeEEEEEecCCccEEEEe-eeeecCCCccccCCCCCCccccc
Q psy14257 339 NRSPLVTK-----NIQWPSSLVIDYNQDILYWCDSH-LNTVESVRVDGSERTVSFN-LEVLGSDSRVGIPNCRPEDNLWI 411 (841)
Q Consensus 339 ~~~~l~~~-----~~~~P~glavD~~~~~lYwaD~~-~~~I~~~~ldG~~~~~~~~-~~~~~~~~~~~i~~~~~~avdw~ 411 (841)
....+... .-..|.+|++++++++||++... .++|..++++... ++.. +.. ....+ ..+...
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~--~~~~~i~~---~~~~~------v~~~p~ 161 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD--YVEDVTAA---AGCWS------VIPQPN 161 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE--EEEEEGGG---TTEEE------EEECTT
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc--EEEEEecC---CCcce------eEEcCC
Confidence 22222211 13579999999999999999975 7899999887553 2222 111 00000 001111
Q ss_pred cceEEEEecCCCcEEEEccC--CceEEEEe----cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEE
Q psy14257 412 GKNLYWVESNLDQIEVAKLS--GQFRRTLI----AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~--G~~~~~l~----~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~ 485 (841)
++..|++-...+++..++++ |+...... ...-..|..++..+....+++... .++|+.+++.+.....+..
T Consensus 162 ~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 162 RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY---YGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT---TSEEEEEECSSSSCEEEEE
T ss_pred CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeC---CCeEEEEEecCCCceeccc
Confidence 23456665556666665553 43321111 111134555555555556666653 3578888887655444332
Q ss_pred ecccC----CCCCCcee---EEEeccCCEEEEEeC----------CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-
Q psy14257 486 VDLLT----SRGAWPNG---LTLDYQLTRIYWIDA----------KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF- 547 (841)
Q Consensus 486 ~~~~~----~~~~~P~g---lalD~~~~~LYw~d~----------~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~- 547 (841)
..... .....|.| +++++.+++||++.. ..+.|..+|+....+..-+... . |.+|++.
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~-p~~ia~sp 314 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D-ALSMTIDQ 314 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T-CCEEEEET
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C-eeEEEECC
Confidence 11000 01113555 999998999999864 1358999998765443333332 2 9999994
Q ss_pred -cCeEEEEeCCCCeEEEEeccCC--cceEEEecccCCCce
Q psy14257 548 -ENHVYWTDWRTNSVIRANKWNG--SDVTLIQRTLTQPFI 584 (841)
Q Consensus 548 -~~~lY~td~~~~~i~~~~~~~g--~~~~~i~~~~~~p~~ 584 (841)
+.+||.+.+ +.|..++..++ +.+..+...-..|.+
T Consensus 315 dg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~ 352 (361)
T 2oiz_A 315 QRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQ 352 (361)
T ss_dssp TTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEE
T ss_pred CCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEE
Confidence 568999986 88988998887 655544332334443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-08 Score=103.81 Aligned_cols=190 Identities=12% Similarity=0.099 Sum_probs=113.4
Q ss_pred CCCeEEEEEecCCcccceEEEEeC-----CCCCccceEEeee-cCceeEEEeeecCCCCCCCCCCEEE--EccCCCcccc
Q psy14257 271 IDDKIYNATLIGNSLSNIDVVVQT-----GLSTAEGLAVDWI-GKNLYMFWAFWSLSPSNSSDGGIEK--AGMHGENRSP 342 (841)
Q Consensus 271 ~~~~I~~~~~~~~~~~~~~~~~~~-----~l~~p~giavD~~-~~~~y~~~td~~~~~~~~~~~~I~~--~~~dG~~~~~ 342 (841)
..|+|++++++.......+..+.. ..-.|.||.+... .+.+|+|..+-+. ...+|+. .+.++.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~-----~~s~ielf~~d~~~~~~~~ 155 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-----SSSTVEVFKFQEEEKSLLH 155 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST-----TCCEEEEEEEETTTTEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC-----CCCeEEEEEEECCCCEEEE
Confidence 466777777653211122222221 1238999999763 3467888876541 2335555 4455443322
Q ss_pred c---cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEe
Q psy14257 343 L---VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVE 419 (841)
Q Consensus 343 l---~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD 419 (841)
+ -...+..|+.+++|.+ +.+|+++.. |++|
T Consensus 156 ~~~~~g~~~~~pND~~v~~~-G~fyvt~~~----------------------------------------------~ftd 188 (355)
T 3sre_A 156 LKTIRHKLLPSVNDIVAVGP-EHFYATNDH----------------------------------------------YFID 188 (355)
T ss_dssp EEEECCTTCSSEEEEEEEET-TEEEEEESC----------------------------------------------SCSS
T ss_pred EeccccCCCCCCceEEEeCC-CCEEecCCc----------------------------------------------EeCC
Confidence 2 1237889999999975 677777532 1111
Q ss_pred -----------cCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc----EEEE
Q psy14257 420 -----------SNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR----SVIV 484 (841)
Q Consensus 420 -----------~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~----~~i~ 484 (841)
...++|++++. ++ .++ +.+++..|+|||++|++.+||++|.. ..+|+++++++... +++
T Consensus 189 ~~~~~~e~~~~~~~g~vyr~d~-~~-~~~-~~~~l~~pNGia~spDg~~lYvadt~--~~~I~~~~~~~~g~l~~~~~~- 262 (355)
T 3sre_A 189 PYLKSWEMHLGLAWSFVTYYSP-ND-VRV-VAEGFDFANGINISPDGKYVYIAELL--AHKIHVYEKHANWTLTPLRVL- 262 (355)
T ss_dssp HHHHHHHHHTTCCCEEEEEECT-TC-CEE-EEEEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSCEEEEEEE-
T ss_pred cccccchhhccCCccEEEEEEC-Ce-EEE-eecCCcccCcceECCCCCEEEEEeCC--CCeEEEEEECCCCcEecCEEE-
Confidence 11234444444 22 223 34568899999999998999999987 78999999874332 222
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEe-CCCCeEEEEEcC
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWID-AKSDSIHTVTYD 524 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d-~~~~~I~~~~~d 524 (841)
. ....|.||++|.++++||++. ....+|.+++++
T Consensus 263 ~------~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 263 S------FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp E------CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred e------CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 3 136799999995458999965 333334433333
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=108.70 Aligned_cols=106 Identities=25% Similarity=0.578 Sum_probs=85.0
Q ss_pred ccCCCCCeEecCCCCCCCCCCCCCCCCC---------ccc---ccccccC-CCCC--CCcccCCCCcEEecCCCceecCC
Q psy14257 101 DCQDVLRTCIPKALVCDGEPACFNGEDE---------MFC---DEKQCLR-SDCH--HDCYNTPEGFMCVCPRDMYLQPD 165 (841)
Q Consensus 101 ~C~~~~~~Ci~~~~~Cdg~~~C~~g~de---------~~C---~eC~~~~-~~C~--~~C~~~~g~~~C~C~~Gy~l~~d 165 (841)
.|.+. +.|++. +.| .|..||.+ ..| +||.... ..|. +.|++++++|+|.|++||.+...
T Consensus 8 ~C~~~-~~C~~~-~~C----~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~ 81 (143)
T 2bou_A 8 WCPQD-SSCVNA-TAC----RCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSG 81 (143)
T ss_dssp TCCTT-EEESSS-SCE----EECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTC
T ss_pred cCCCC-CEEcCC-CEE----eCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcC
Confidence 46665 788775 788 89999854 458 7887543 3786 48999999999999999997643
Q ss_pred --------CCccccccccCC-CCCcc--CceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 166 --------LITCSYLHPCEA-WGTCS--QDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 166 --------~~~C~~~~eC~~-~~~Cs--~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
+..|++++||.. ...|. +.|+++ .++|+|.|++||.+..+.+.|...
T Consensus 82 ~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~--~g~y~C~C~~Gy~g~~~~~~C~~~ 139 (143)
T 2bou_A 82 AKTFKNESENTCQDVDECSSGQHQCDSSTVCFNT--VGSYSCRCRPGWKPRHGIPNNQKD 139 (143)
T ss_dssp CSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEEC--SSCEEEECCSSSCBCTTCCSSBTT
T ss_pred ccccccCCCCCcCCccCccCcCCCCCCCCEEECC--CCCEEeeCCCCcccCCCCccCccC
Confidence 458999999973 56886 689999 999999999999999888888655
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-06 Score=97.19 Aligned_cols=334 Identities=8% Similarity=-0.031 Sum_probs=198.4
Q ss_pred ccccccceEEEEecCCCcEEEEccCCce-EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQF-RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIV 484 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~ 484 (841)
..|+ .+.+|++....++|.+++.+... ...+- .+ ..|.+++++|+.++||++.. .+.|..+++. .+.. ++.
T Consensus 162 ~~d~-~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g-~~p~~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~-~v~ 234 (567)
T 1qks_A 162 DWDL-ENLFSVTLRDAGQIALIDGSTYEIKTVLD-TG-YAVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPT-TVA 234 (567)
T ss_dssp CCCG-GGEEEEEETTTTEEEEEETTTCCEEEEEE-CS-SCEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCC-EEE
T ss_pred ccCC-CceEEEEeCCCCeEEEEECCCCeEEEEEe-CC-CCccceEECCCCCEEEEEcC---CCeEEEEECCCCCCc-EeE
Confidence 3443 57899999999999999997643 43433 22 47899999999999999874 4689999985 3332 232
Q ss_pred EecccCCCCCCceeEEEe----ccCCEEEEEeCCCCeEEEEEcCCCee-EEEEcCCCC--------CCcceEEEEe--cC
Q psy14257 485 RVDLLTSRGAWPNGLTLD----YQLTRIYWIDAKSDSIHTVTYDGKDH-HVVLSNHDS--------LTHPFAIALF--EN 549 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD----~~~~~LYw~d~~~~~I~~~~~dG~~~-~~i~~~~~~--------l~~P~gla~~--~~ 549 (841)
.. .....|.+|+++ +++++||+++...+.|..+|...... +++...... -.++.+|... ..
T Consensus 235 ~i----~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~ 310 (567)
T 1qks_A 235 EI----KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 310 (567)
T ss_dssp EE----ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred EE----ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence 21 234569999999 58899999999889999998655333 333221100 0123445442 35
Q ss_pred eEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCC
Q psy14257 550 HVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNK 629 (841)
Q Consensus 550 ~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~ 629 (841)
.+|++...++.|..++..+.+...+..... +.- +.+..+.+|
T Consensus 311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~--------------------~~~----------------~~d~~~~pd-- 352 (567)
T 1qks_A 311 EFIVNVKETGKILLVDYTDLNNLKTTEISA--------------------ERF----------------LHDGGLDGS-- 352 (567)
T ss_dssp EEEEEETTTTEEEEEETTCSSEEEEEEEEC--------------------CSS----------------EEEEEECTT--
T ss_pred EEEEEecCCCeEEEEecCCCccceeeeeec--------------------ccc----------------ccCceECCC--
Confidence 677777778888888765444332211000 000 001112222
Q ss_pred cccccCceeEEeec--CCeEEEEecCCCCccccceeec-CCCCCc-eEEE-EecCCCEEEEEE-CCCCeEEEEEcccCce
Q psy14257 630 TCQVADSQFIIFSR--PREIRGVDLEHPYYHTIPTISI-PQVFSP-NNLN-FDAANKKIYWTD-QEYNEVKRSSIVGGQI 703 (841)
Q Consensus 630 tC~~~~~~~l~~~~--~~~i~~~~l~~~~~~~~~~~~~-~~~~~~-~~v~-~d~~~~~iyw~d-~~~~~I~~~~~~g~~~ 703 (841)
..+++++. .+.|..+++... .....+++ ....+| .++. ++|..+.+|++. ...++|..++.+....
T Consensus 353 ------gr~~~va~~~sn~V~ViD~~t~--kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 353 ------HRYFITAANARNKLVVIDTKEG--KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp ------SCEEEEEEGGGTEEEEEETTTT--EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred ------CCEEEEEeCCCCeEEEEECCCC--cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 23444443 356777776533 22334455 444554 2333 588778887765 3568899888765210
Q ss_pred eeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCC------CCeEEEEecCCc-----
Q psy14257 704 QLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPT------QSKIVVCNLEGE----- 772 (841)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~------~~~I~v~~l~g~----- 772 (841)
+...-...+++-. .-..+..|++.+.+++||+.+ .. .++|.|++++..
T Consensus 425 ------------------~~~~~kvv~~i~~-~g~g~~~i~~~p~~~~l~v~~--~~~~~~~~~~~v~v~d~~~~~~~g~ 483 (567)
T 1qks_A 425 ------------------PDNAWKILDSFPA-LGGGSLFIKTHPNSQYLYVDA--TLNPEAEISGSVAVFDIKAMTGDGS 483 (567)
T ss_dssp ------------------TTTBTSEEEEEEC-SCSCCCCEECCTTCSEEEEEC--TTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred ------------------ccccCEEEEEEec-CCCCCEEEEeCCCCCeEEEec--CCCCCcccCceEEEEECCccccccc
Confidence 0000001223322 223456788999999999983 22 358999987533
Q ss_pred ce--EEEE-c---CCCCCCCcCCCceEEEEeCCCCeEEEEecCCC--cceEEEEecC
Q psy14257 773 YQ--TTIL-S---NESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ--VVTIEMAFMD 821 (841)
Q Consensus 773 ~~--~~~~-~---~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~--~~~I~~~~~d 821 (841)
.. .++- . + ..+. -..|..+++.|...+||++.|+++ ...|...+..
T Consensus 484 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 484 DPEFKTLPIAEWAG-ITEG--QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp CCCEEEECHHHHHT-CCSS--CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred CCCcEEeccccccc-cCCC--CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence 22 2331 1 1 0000 358999999999999999988532 2467765433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-08 Score=107.02 Aligned_cols=300 Identities=7% Similarity=-0.103 Sum_probs=171.3
Q ss_pred cceEEEEecCCC----cEEEEccCCc-eEEEEecCCCCCceeEEEcCCCCeEEEEecC-------CCCCeEEEecCCCCC
Q psy14257 412 GKNLYWVESNLD----QIEVAKLSGQ-FRRTLIAGDMESPRAIALDPRFGLLFWTDWD-------SKAPRIERCSMSGEH 479 (841)
Q Consensus 412 ~~~LY~tD~~~~----~I~v~~~~G~-~~~~l~~~~l~~P~giavd~~~g~Ly~td~~-------~~~~~I~r~~ldG~~ 479 (841)
..++|+++...+ +|.++|++.. ...++-. + ..| +|+++|+.++||++++. +..+.|...++.-..
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v-G-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG-A-FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-C-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEEEEeC-C-CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 378999998877 8889998754 4444433 3 358 99999999999999842 124678888886433
Q ss_pred cEEEEEecccC--CCCCCceeEEEeccCCEEEEEeCC-CCeEEE--EEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEE
Q psy14257 480 RSVIVRVDLLT--SRGAWPNGLTLDYQLTRIYWIDAK-SDSIHT--VTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWT 554 (841)
Q Consensus 480 ~~~i~~~~~~~--~~~~~P~glalD~~~~~LYw~d~~-~~~I~~--~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~t 554 (841)
...-+..+-.. .....|.++++++++++||+++.. .+.|.. +|+.. .+++... ..+.+...+.+.|++
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~-----~~~~~~p~g~~~~~~ 180 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSA-----SCFHIHPGAAATHYL 180 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECS-----SCCCCEEEETTEEEC
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECC-----CceEEccCCCeEEEE
Confidence 32222210000 013579999999999999999865 567777 66655 4444321 112344456778888
Q ss_pred eCCCCeEEEEeccCCc--ceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 555 DWRTNSVIRANKWNGS--DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 555 d~~~~~i~~~~~~~g~--~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
....+++..++..+.. ..+++... . + ..+. ... |. . .+
T Consensus 181 ~~~dg~~~~vd~~~~~~~~~~v~~~~-t-~----~i~v-------------------g~~------P~--~-~~------ 220 (368)
T 1mda_H 181 GSCPASLAASDLAAAPAAAGIVGAQC-T-G----AQNC-------------------SSQ------AA--Q-AN------ 220 (368)
T ss_dssp CCCTTSCEEEECCSSCCCCEECCCCS-C-T----TSCB-------------------CSC------CE--E-ET------
T ss_pred EcCCCCEEEEECccccccCCeEEEEe-e-e----eeeC-------------------CCC------cc--c-cc------
Confidence 8777777666654300 01111000 0 0 0000 000 00 0 11
Q ss_pred ccCceeEEeecCCeEEEEecCCCCccccceeecC------CCCCceE---EEEecCCCEEEEEEC---C-----CCeEEE
Q psy14257 633 VADSQFIIFSRPREIRGVDLEHPYYHTIPTISIP------QVFSPNN---LNFDAANKKIYWTDQ---E-----YNEVKR 695 (841)
Q Consensus 633 ~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~------~~~~~~~---v~~d~~~~~iyw~d~---~-----~~~I~~ 695 (841)
....+++++. +.+..+++..........+++. ....|.+ +++++..+++|++.. . .+.+..
T Consensus 221 -~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 221 -YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp -TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred -cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 1122333333 5566666543211111111111 0112222 789999999999864 2 234556
Q ss_pred EEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCC-CCCeEEEEecCCcce
Q psy14257 696 SSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP-TQSKIVVCNLEGEYQ 774 (841)
Q Consensus 696 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~-~~~~I~v~~l~g~~~ 774 (841)
+++.... . ...|-. + ..|.||++++.++.||+++ . ..++|.|+++.....
T Consensus 299 iD~~t~~--v-----------------------v~~i~v-g-~~p~gi~~s~Dg~~l~va~--~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 299 VTASVGQ--T-----------------------SGPISN-G-HDSDAIIAAQDGASDNYAN--SAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EESSSCC--E-----------------------EECCEE-E-EEECEEEECCSSSCEEEEE--ETTTTEEEEEESSSCEE
T ss_pred EECCCCe--E-----------------------EEEEEC-C-CCcceEEECCCCCEEEEEc--cCCCCeEEEEECCCCcE
Confidence 6665433 0 111111 1 1599999999999999995 4 579999999876543
Q ss_pred EEEEcCCCCCCCcCCCceEEEEeCC
Q psy14257 775 TTILSNESNDTSTLSKISSIAVWPV 799 (841)
Q Consensus 775 ~~~~~~~~~~~~~l~~p~~iavd~~ 799 (841)
..-+.. ...|.+|+++++
T Consensus 350 v~~I~v-------g~~P~~i~~~~~ 367 (368)
T 1mda_H 350 QSSVEL-------DKGPESLSVQNE 367 (368)
T ss_dssp EEECCC-------CSCCCEEECCCC
T ss_pred EEEEEC-------CCCCCEEEeecC
Confidence 333333 478999999864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-07 Score=100.41 Aligned_cols=282 Identities=11% Similarity=-0.001 Sum_probs=157.0
Q ss_pred eEEEecCC-CeEEEEEec--CCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEcc--CCCc
Q psy14257 265 VFWTDVID-DKIYNATLI--GNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGM--HGEN 339 (841)
Q Consensus 265 lyw~d~~~-~~I~~~~~~--~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~--dG~~ 339 (841)
||+..... +.|+.+.++ +|.+.........+...|..+|+++.++.+| .++.+ .|..+++ +|+.
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~--~~~~~---------~v~~~~~~~~g~~ 73 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIY--GAAMK---------KWSSFAVKSPTEI 73 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEE--EEEBT---------EEEEEEEEETTEE
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEE--EEccc---------eEEEEEECCCCCE
Confidence 55544332 456666554 3321111111112455799999998765454 34321 5666665 4543
Q ss_pred cccccccCcCCCceEEEEccCCEEE--EEe------C------CCCeEEEEEec--CCccEEEEeeeeecCCCccccCCC
Q psy14257 340 RSPLVTKNIQWPSSLVIDYNQDILY--WCD------S------HLNTVESVRVD--GSERTVSFNLEVLGSDSRVGIPNC 403 (841)
Q Consensus 340 ~~~l~~~~~~~P~glavD~~~~~lY--waD------~------~~~~I~~~~ld--G~~~~~~~~~~~~~~~~~~~i~~~ 403 (841)
.........+.|..+++++++++|| .++ . ..+.|..++++ |.....+...........
T Consensus 74 ~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~------ 147 (365)
T 1jof_A 74 VHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI------ 147 (365)
T ss_dssp EEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE------
T ss_pred EEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc------
Confidence 2211111123588899999888644 444 1 46777777775 432222211100000111
Q ss_pred CCCccccccceEEEEecCCCcEEEEccC--CceEEE-Eec--CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC--
Q psy14257 404 RPEDNLWIGKNLYWVESNLDQIEVAKLS--GQFRRT-LIA--GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-- 476 (841)
Q Consensus 404 ~~~avdw~~~~LY~tD~~~~~I~v~~~~--G~~~~~-l~~--~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-- 476 (841)
..++++..++.||+++...++|.+++++ |+.... .+. .....|++++++|+..+||++... .+.|....++
T Consensus 148 ~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~--~~~v~v~~~~~~ 225 (365)
T 1jof_A 148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GNRICEYVIDPA 225 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTT
T ss_pred eEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC--CCeEEEEEEeCC
Confidence 1123444557799999888899999986 544321 121 113579999999998899999865 4566666554
Q ss_pred -CCCcEEEEEecccCCCC---C-------CceeEE-EeccCCEEEEEeCCCC-----eEEEEEcC--CCeeEE--EEcCC
Q psy14257 477 -GEHRSVIVRVDLLTSRG---A-------WPNGLT-LDYQLTRIYWIDAKSD-----SIHTVTYD--GKDHHV--VLSNH 535 (841)
Q Consensus 477 -G~~~~~i~~~~~~~~~~---~-------~P~gla-lD~~~~~LYw~d~~~~-----~I~~~~~d--G~~~~~--i~~~~ 535 (841)
|.....+......+..+ . .|.+++ +++++++||+++...+ .|..++++ |..... .....
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~ 305 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP 305 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC
Confidence 33211011111111111 1 588999 9999889999986555 88888874 443321 12111
Q ss_pred CCCCcceEEEEe-----cCeEEEEeCCCCeEEEEecc
Q psy14257 536 DSLTHPFAIALF-----ENHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 536 ~~l~~P~gla~~-----~~~lY~td~~~~~i~~~~~~ 567 (841)
...|.++++. +.+||+++...+.|..++..
T Consensus 306 --~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 306 --TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp --SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred --CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 2345666653 57899998877777655543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-08 Score=107.47 Aligned_cols=114 Identities=12% Similarity=-0.002 Sum_probs=84.7
Q ss_pred CCCCCceeEEEcCCCCeEEEEecC---------------CCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccC
Q psy14257 441 GDMESPRAIALDPRFGLLFWTDWD---------------SKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQL 505 (841)
Q Consensus 441 ~~l~~P~giavd~~~g~Ly~td~~---------------~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~ 505 (841)
..+..|+++++++. |.+|+++.. ...++|+|++.. ..+++.. .+..||||++++++
T Consensus 162 ~~~~~pND~~v~~~-G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~------~l~~pNGia~spDg 232 (355)
T 3sre_A 162 KLLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE------GFDFANGINISPDG 232 (355)
T ss_dssp TTCSSEEEEEEEET-TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE------EESSEEEEEECTTS
T ss_pred CCCCCCceEEEeCC-CCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec------CCcccCcceECCCC
Confidence 35788999999986 778877631 124689999873 3444443 68899999999999
Q ss_pred CEEEEEeCCCCeEEEEEcCC--C--eeEEEEcCCCCCCcceEEEEec--CeEEEEe-CCCCeEEEEecc
Q psy14257 506 TRIYWIDAKSDSIHTVTYDG--K--DHHVVLSNHDSLTHPFAIALFE--NHVYWTD-WRTNSVIRANKW 567 (841)
Q Consensus 506 ~~LYw~d~~~~~I~~~~~dG--~--~~~~i~~~~~~l~~P~gla~~~--~~lY~td-~~~~~i~~~~~~ 567 (841)
++||++|...++|+++++++ + .++++ .. ...|.|++++. |.||++. |...+|.+.++.
T Consensus 233 ~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 233 KYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 99999999999999999864 2 22333 22 35799999973 8999965 666677776654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=113.86 Aligned_cols=256 Identities=14% Similarity=0.057 Sum_probs=148.6
Q ss_pred EEEeCCCCCccceEEeeecC-ceeEEEeeecCCCCCCCCCCEEEEccCCCccc-ccc------ccC-----cCCCceEEE
Q psy14257 290 VVVQTGLSTAEGLAVDWIGK-NLYMFWAFWSLSPSNSSDGGIEKAGMHGENRS-PLV------TKN-----IQWPSSLVI 356 (841)
Q Consensus 290 ~~~~~~l~~p~giavD~~~~-~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~-~l~------~~~-----~~~P~glav 356 (841)
.++..+|..|.+||+.+.+. ++|| ++ ..|+|.+++.+|.... ++. ... ..-+.|||+
T Consensus 7 ~~va~gL~~P~~~a~~pdG~~rl~V--~e--------r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~ 76 (463)
T 2wg3_C 7 QEVVSGLRQPVGALHSGDGSQRLFI--LE--------KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAF 76 (463)
T ss_dssp EEEEEEESSEEEEECCSSSSCCEEE--EE--------TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEE
T ss_pred EEeccCCCCceEEEECCCCCeEEEE--Ee--------CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEe
Confidence 34566899999999998653 3554 44 2478999988775322 211 111 245678999
Q ss_pred Ecc---CCEEEEEeCCC------------CeEEEEEecCC--------ccEEEEeeeeecCCCccccCCCCCCccccccc
Q psy14257 357 DYN---QDILYWCDSHL------------NTVESVRVDGS--------ERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGK 413 (841)
Q Consensus 357 D~~---~~~lYwaD~~~------------~~I~~~~ldG~--------~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~ 413 (841)
++. +++||++-... .+|.|+.++.. ..++++..... .... .-..++++. .+
T Consensus 77 ~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-~~~H----~g~~l~fgp-DG 150 (463)
T 2wg3_C 77 HPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-HRKH----LGGQLLFGP-DG 150 (463)
T ss_dssp CTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-SSSS----CEEEEEECT-TS
T ss_pred CCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-CCcc----cCCcEeECC-CC
Confidence 985 78999986521 37888888632 23455543211 1000 001112222 27
Q ss_pred eEEEEecC-----------------CCcEEEEccCCce-------------------EEEEecCCCCCceeEEEcCCCC-
Q psy14257 414 NLYWVESN-----------------LDQIEVAKLSGQF-------------------RRTLIAGDMESPRAIALDPRFG- 456 (841)
Q Consensus 414 ~LY~tD~~-----------------~~~I~v~~~~G~~-------------------~~~l~~~~l~~P~giavd~~~g- 456 (841)
+||++-.. .++|.+++++|+. ...+.+.++.+|.+|++||..|
T Consensus 151 ~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~ 230 (463)
T 2wg3_C 151 FLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTD 230 (463)
T ss_dssp CEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSS
T ss_pred cEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCC
Confidence 99998421 4679999999941 1234556889999999999854
Q ss_pred -----eEEEEec-CCC--CCeEEEecCCCCCc---EEEEEecccCCCCCCceeEEEec------cCCEEEEEeCCCCeEE
Q psy14257 457 -----LLFWTDW-DSK--APRIERCSMSGEHR---SVIVRVDLLTSRGAWPNGLTLDY------QLTRIYWIDAKSDSIH 519 (841)
Q Consensus 457 -----~Ly~td~-~~~--~~~I~r~~ldG~~~---~~i~~~~~~~~~~~~P~glalD~------~~~~LYw~d~~~~~I~ 519 (841)
+||.+|. +.. ...|.++.. |.+. ..+... ....-..|.|+++-. ..+.+|+++.. ++|.
T Consensus 231 ~~G~l~~~~~D~~G~~~~~~ei~~i~~-G~~yG~~~P~~~~--~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~ 306 (463)
T 2wg3_C 231 ININLTILCSDSNGKNRSSARILQIIK-GKDYESEPSLLEF--KPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFL 306 (463)
T ss_dssp TTCSEEEEEECC------CEEEEEEC-----CCSCCCCEEC--CC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEE
T ss_pred cccceEEEecccCCCCCCCCeEeeecc-CCCCCCCCCeEEe--eCCCCccccceEEEeCCCChhhcceEEEecCC-CcEE
Confidence 7888885 311 124554432 2211 111210 001114688998832 23568889986 7899
Q ss_pred EEEcCCCe---eEEEE-cC------CCCCCcceEEEEe-cCeEEEEeC-------CCCeEEEEe
Q psy14257 520 TVTYDGKD---HHVVL-SN------HDSLTHPFAIALF-ENHVYWTDW-------RTNSVIRAN 565 (841)
Q Consensus 520 ~~~~dG~~---~~~i~-~~------~~~l~~P~gla~~-~~~lY~td~-------~~~~i~~~~ 565 (841)
++.+++.. ....+ .. .....+|.+|++. +|.||++++ ..++|+|+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 307 TLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp EEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred EEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 99886532 22222 11 1224578899985 589999998 467788775
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-11 Score=106.18 Aligned_cols=96 Identities=25% Similarity=0.577 Sum_probs=76.0
Q ss_pred eEecC---CCCCCCCCCCCCCCCCccc--ccccc--cCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCC
Q psy14257 108 TCIPK---ALVCDGEPACFNGEDEMFC--DEKQC--LRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGT 180 (841)
Q Consensus 108 ~Ci~~---~~~Cdg~~~C~~g~de~~C--~eC~~--~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~ 180 (841)
.|++. +|.| .|++||....+ ++|.. .+++|.+.|.+ .++|+|.|++||.+.. ++.|++++||....+
T Consensus 15 ~C~~~~~g~y~C----~C~~Gy~g~~~~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~-g~~C~dideC~~~~~ 88 (118)
T 1dx5_I 15 QCQPLDQTSYLC----VCAEGFAPIPHEPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDD-GFICTDIDECENGGF 88 (118)
T ss_dssp EEEECSSSCEEE----ECCTTEEEETTEEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEET-TTEEEECCHHHHCSS
T ss_pred CCCCCCCCCEEe----ECCCCccccCCCCCccccccCCCCCCCcccC-CCCeEeECCCCccCCC-CCccccccccCCCCC
Confidence 56554 7889 89999965433 23432 35678888998 5999999999999866 889999999975578
Q ss_pred ccCceeecCCCCceEEeecCCeeecCC-CCce
Q psy14257 181 CSQDCEPSVSNNSYKCTCHAGYELEPD-MFTC 211 (841)
Q Consensus 181 Cs~~C~~~~~~g~~~C~C~~G~~l~~d-~~~C 211 (841)
|.+.|+++ .++|+|.|++||.+..+ +++|
T Consensus 89 C~~~C~n~--~g~y~C~C~~G~~g~~~~g~~C 118 (118)
T 1dx5_I 89 CSGVCHNL--PGTFECICGPDSALAGQIGTDC 118 (118)
T ss_dssp CSSEEEEC--SSSEEEEECSSSSCEEEESCCC
T ss_pred CcCeEEeC--CCCEEEECCCCCccCCCCCCCC
Confidence 98899999 99999999999987655 4443
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.3e-10 Score=93.55 Aligned_cols=74 Identities=31% Similarity=0.717 Sum_probs=61.6
Q ss_pred ccccccCCCCCC-CcccCCCCcEEecCCCceecCCCCccccccccCCCCCcc-CceeecCCCCceEEeecCCeeecCCCC
Q psy14257 132 DEKQCLRSDCHH-DCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCS-QDCEPSVSNNSYKCTCHAGYELEPDMF 209 (841)
Q Consensus 132 ~eC~~~~~~C~~-~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs-~~C~~~~~~g~~~C~C~~G~~l~~d~~ 209 (841)
+||.. +.+|.+ .|++++++|+|.|++||.+ +++.|++++||....+|. +.|.++ .++|+|.|++||.+..+ +
T Consensus 6 deC~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~dideC~~~~~C~~~~C~n~--~g~y~C~C~~G~~g~~~-~ 79 (82)
T 1emn_A 6 DECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNGTCKNV--IGGFECTCEEGFEPGPM-M 79 (82)
T ss_dssp CSSSS-TTSCSSSEECCCSSCCCEECCTTEEE--ETTEEEECCGGGTCCTTSSSCEEEC--SSSEEECCSSSSCCCSS-S
T ss_pred ccCCC-CCCcCCCEEEecCCCEEEECCCCeEC--CCCccCCcccccCCCCCCCCEeECC--CCCEEeECCCCeEeCCC-C
Confidence 56654 457764 8999999999999999987 678999999997556785 589999 99999999999998766 5
Q ss_pred ce
Q psy14257 210 TC 211 (841)
Q Consensus 210 ~C 211 (841)
.|
T Consensus 80 ~C 81 (82)
T 1emn_A 80 TC 81 (82)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-10 Score=129.34 Aligned_cols=93 Identities=34% Similarity=0.679 Sum_probs=71.0
Q ss_pred eccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCc
Q psy14257 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNC 82 (841)
Q Consensus 3 Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C 82 (841)
|++..+.||+..+|.+.+++ | |..++|+|. ++.||+..|+|||..||. |+|||.+|
T Consensus 183 ~~~~~h~~DagV~C~~~~~~----c----~~~~~~~C~-~~~ci~~~~~Cdg~~dC~--d~sDE~~C------------- 238 (565)
T 2xrc_A 183 RRTMGYQDFADVVCYTQKAD----S----PMDDFFQCV-NGKYISQMKACDGINDCG--DQSDELCC------------- 238 (565)
T ss_dssp CCCCSSCCCCEEEBCCC-----------------CBCT-TSCBCCTTSTTSSSCCSS--SSSSSSSB-------------
T ss_pred ccccccccCCceeccccccC----C----CCcCeeECC-CCCccCHHHcCCCcccCC--CCcccccc-------------
Confidence 45566788888888765432 2 345679997 889999999999999999 88877654
Q ss_pred cCCCCCCCCCCCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 83 THSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 83 ~~c~~~~~c~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
.. |++.+|.|.+ +.|++...+|||..+|.+|+||..|
T Consensus 239 ~~----------c~~~~~~C~~--~~C~~~~~~cdG~~dC~~gsDE~~C 275 (565)
T 2xrc_A 239 KA----------CQGKGFHCKS--GVCIPSQYQCNGEVDCITGEDEVGC 275 (565)
T ss_dssp SS----------CSSSCEEETT--TEEECGGGTTSSSCCSSSCTTSSSC
T ss_pred cc----------cCCCceecCC--CcccCccccCCCcccCCCCccccCc
Confidence 22 5566889988 7899999999999999999999777
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-08 Score=105.72 Aligned_cols=279 Identities=8% Similarity=-0.058 Sum_probs=171.4
Q ss_pred eEEEecCCC----eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCC-Cc
Q psy14257 265 VFWTDVIDD----KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG-EN 339 (841)
Q Consensus 265 lyw~d~~~~----~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG-~~ 339 (841)
+|+++...+ +|.+++++.+. ... .+..+. .| +++++|.++.+|+.-+.+........++.|..+++.. +.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~--v~~-~i~vG~-~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGV--TLG-HSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTE--EEE-EEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred EEEECCccCCccceEEEEECCCCe--EEE-EEeCCC-CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 888888776 66677765543 222 233443 58 9999998888877644321100001134688888764 33
Q ss_pred ccccccc------CcCCCceEEEEccCCEEEEEeCC-CCeEEE--EEecCCccEEEEeeeeecCCCccccCCCCCCcccc
Q psy14257 340 RSPLVTK------NIQWPSSLVIDYNQDILYWCDSH-LNTVES--VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410 (841)
Q Consensus 340 ~~~l~~~------~~~~P~glavD~~~~~lYwaD~~-~~~I~~--~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw 410 (841)
...+... ....|.+|++++++++||+++.. .+.|.. +++.. ...+ .+. . + ..+..
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~-----~------~--~~~~p 172 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSA-----S------C--FHIHP 172 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECS-----S------C--CCCEE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECC-----C------c--eEEcc
Confidence 3333221 13579999999999999999975 566777 55544 2222 110 0 0 11223
Q ss_pred ccceEEEEecCCCcEEEEccCC----ceEEEE-----ecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcE
Q psy14257 411 IGKNLYWVESNLDQIEVAKLSG----QFRRTL-----IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRS 481 (841)
Q Consensus 411 ~~~~LY~tD~~~~~I~v~~~~G----~~~~~l-----~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~ 481 (841)
.++.+|++....+++.+++++. ...... +.. -..|. + .+..+.+||+.. +.|+.+++.+...+
T Consensus 173 ~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v-g~~P~--~-~~~~~~~~~vs~----~~V~viD~~~~~~~ 244 (368)
T 1mda_H 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC-SSQAA--Q-ANYPGMLVWAVA----SSILQGDIPAAGAT 244 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB-CSCCE--E-ETTTTEEEECBS----SCCEEEECCSSCCE
T ss_pred CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC-CCCcc--c-cccCCEEEEEcC----CEEEEEECCCCcce
Confidence 3477888888888888888765 222110 111 14576 4 566788888874 57888888765554
Q ss_pred EEEEecccC----CCCCCcee---EEEeccCCEEEEEeC---C-----CCeEEEEEcCCCee-EEEEcCCCCCCcceEEE
Q psy14257 482 VIVRVDLLT----SRGAWPNG---LTLDYQLTRIYWIDA---K-----SDSIHTVTYDGKDH-HVVLSNHDSLTHPFAIA 545 (841)
Q Consensus 482 ~i~~~~~~~----~~~~~P~g---lalD~~~~~LYw~d~---~-----~~~I~~~~~dG~~~-~~i~~~~~~l~~P~gla 545 (841)
++....+.. .....|.| +++++.+++||++.. + .+.+..+|+....+ .++.. -..|.+|+
T Consensus 245 v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~ 320 (368)
T 1mda_H 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAII 320 (368)
T ss_dssp EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEE
T ss_pred EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEE
Confidence 443210000 01224666 899999999999865 3 34566888876433 22221 13699999
Q ss_pred Eec--CeEEEEeC-CCCeEEEEeccCCcceEEEe
Q psy14257 546 LFE--NHVYWTDW-RTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 546 ~~~--~~lY~td~-~~~~i~~~~~~~g~~~~~i~ 576 (841)
+.. .++|++.. ..+.|..++..+++.+..|.
T Consensus 321 ~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred ECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 953 46999998 69999999988877665543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-06 Score=99.34 Aligned_cols=335 Identities=9% Similarity=0.044 Sum_probs=200.3
Q ss_pred eEEecc--CccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEec--CCcccceEEEEeCCCC
Q psy14257 222 FVIFSN--RHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLI--GNSLSNIDVVVQTGLS 297 (841)
Q Consensus 222 ~ll~s~--~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~--~~~~~~~~~~~~~~l~ 297 (841)
.+++++ .+.|..++..+..+...++....+..+.+....+. ||.++ ..+.|.++++. .+. ... .+..+ .
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~--lyv~~-~dg~V~viD~~~~t~~--~v~-~i~~G-~ 240 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRY--LFVIG-RDGKVNMIDLWMKEPT--TVA-EIKIG-S 240 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCE--EEEEE-TTSEEEEEETTSSSCC--EEE-EEECC-S
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCE--EEEEc-CCCeEEEEECCCCCCc--EeE-EEecC-C
Confidence 444444 46788888877655444443344556777665444 99886 46789999884 332 222 23333 3
Q ss_pred CccceEEe----eecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccccc-C----------cCCCceEEEEccCCE
Q psy14257 298 TAEGLAVD----WIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTK-N----------IQWPSSLVIDYNQDI 362 (841)
Q Consensus 298 ~p~giavD----~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~-~----------~~~P~glavD~~~~~ 362 (841)
.|++++++ +.++.+|+ +++. .+.|..++.........+.. . -.++.+|+..+.+..
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v--~n~~-------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIA--GAYW-------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEE--EEEE-------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred CCceeEEccccCCCCCEEEE--EEcc-------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 79999999 56655554 3322 23666665432221111211 1 113457777777778
Q ss_pred EEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecC-
Q psy14257 363 LYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG- 441 (841)
Q Consensus 363 lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~- 441 (841)
+|++-...+.|..+++.......+.....-... +..+++..++.+|+++...++|.++++........+..
T Consensus 312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~--------~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg 383 (567)
T 1qks_A 312 FIVNVKETGKILLVDYTDLNNLKTTEISAERFL--------HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG 383 (567)
T ss_dssp EEEEETTTTEEEEEETTCSSEEEEEEEECCSSE--------EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EEEEecCCCeEEEEecCCCccceeeeeeccccc--------cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence 888888889999998865432222221110000 01134445688999999999999999875444333332
Q ss_pred -CCCCc-eeEE-EcCCCCeEEEEecCCCCCeEEEecCCCCC-----cEEEEEecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 442 -DMESP-RAIA-LDPRFGLLFWTDWDSKAPRIERCSMSGEH-----RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 442 -~l~~P-~gia-vd~~~g~Ly~td~~~~~~~I~r~~ldG~~-----~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
...+| +|+. ++|..|.+|.+... ....|..++.+... .+++.... ..-..+-.|.+.+.+.+||+...
T Consensus 384 g~~Phpg~g~~~~~p~~g~v~~t~~~-g~~~Vsvid~~~~~~~~~~~kvv~~i~---~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 384 GQTPHPGRGANFVHPTFGPVWATSHM-GDDSVALIGTDPEGHPDNAWKILDSFP---ALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp SSSBCCTTCEEEEETTTEEEEEEEBS-SSSEEEEEECCTTTCTTTBTSEEEEEE---CSCSCCCCEECCTTCSEEEEECT
T ss_pred CcCCCCccceeeECCCCCcEEEeCCC-CCCeEEEecCCCCCCccccCEEEEEEe---cCCCCCEEEEeCCCCCeEEEecC
Confidence 33455 5765 57877888877642 15789888887421 23333211 12233456888888888887664
Q ss_pred C------CCeEEEEEcCCC-----ee--EEEEc-----CCCCCCcceEEEEe--cCeEEEEeC----CCCeEEEEeccCC
Q psy14257 514 K------SDSIHTVTYDGK-----DH--HVVLS-----NHDSLTHPFAIALF--ENHVYWTDW----RTNSVIRANKWNG 569 (841)
Q Consensus 514 ~------~~~I~~~~~dG~-----~~--~~i~~-----~~~~l~~P~gla~~--~~~lY~td~----~~~~i~~~~~~~g 569 (841)
. .+.|..++.+.. .. +++.- -.+.-.+|..+.+. +.+||++.| ..+.|..++..++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 2 358999987644 22 33321 01113577888884 579999998 3688999998888
Q ss_pred cceEEEe-cccCCCce
Q psy14257 570 SDVTLIQ-RTLTQPFI 584 (841)
Q Consensus 570 ~~~~~i~-~~~~~p~~ 584 (841)
+....|. ..+..|.|
T Consensus 540 ~~~~~i~~~~~~~P~g 555 (567)
T 1qks_A 540 ELKHVIKDERLVTPTG 555 (567)
T ss_dssp EEEEEECCTTCCSEEE
T ss_pred eEEEEeCCCcccCCCe
Confidence 8776664 34566766
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-07 Score=93.52 Aligned_cols=198 Identities=13% Similarity=0.100 Sum_probs=130.7
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-CCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESV 376 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~ 376 (841)
...||+++ ++.+|+--.+.+. .+|.++++. |+....+....-..+.||+++ +++||.++...+.+.++
T Consensus 44 ftqGL~~~--~~~LyestG~~g~-------S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 44 FTEGFFYR--NGYFYESTGLNGR-------SSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEEEEEE--TTEEEEEEEETTE-------EEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred ccceEEEE--CCEEEEECCCCCC-------ceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 34889987 3456653222222 278888875 554444433332334556665 78999999999999999
Q ss_pred EecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCC-ceEEEEecC----CCCCceeEEE
Q psy14257 377 RVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSG-QFRRTLIAG----DMESPRAIAL 451 (841)
Q Consensus 377 ~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~----~l~~P~giav 451 (841)
+++......-+..+. .++++.+.++.||.+|. .++|.+.|... +....+... .+..++.+..
T Consensus 113 D~~t~~~~~ti~~~~------------eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 113 NIRNLRQVRSFNYDG------------EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp ETTTCCEEEEEECSS------------CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred ECccCcEEEEEECCC------------CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 987654443333211 12345566789999995 78999999874 444443321 2355666776
Q ss_pred cCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec-ccC------CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 452 DPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD-LLT------SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 452 d~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~-~~~------~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
. +|.||.+.|. ...|.++++.-......+... +.+ ....-|||||+|+.+++||++--.=.+++.+.+
T Consensus 180 ~--~G~lyan~w~--~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 180 V--DGEIFANVWQ--TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp E--TTEEEEEETT--SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred E--CCEEEEEEcc--CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence 4 6899999998 789999998644443344421 110 123468999999999999999988888888765
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-10 Score=94.97 Aligned_cols=72 Identities=26% Similarity=0.525 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccCCC
Q psy14257 26 HCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDV 105 (841)
Q Consensus 26 ~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~~~~~C~~~ 105 (841)
+|+...|.+.+|+|.+++.|||..|+|||..||. |||||..| ..|.. ..+|.+.+|+|.+.
T Consensus 3 ~C~~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~--DgsDE~~~-------------~~C~~----~~~C~~~~f~c~~~ 63 (80)
T 2kny_A 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCA--DGADESIA-------------AGCLY----NSTGSGSGSGSTEE 63 (80)
T ss_dssp SCSSCCCSSSEEECTTSSCEEEHHHHTTSSCCSS--SSTTTSGG-------------GTCSS----SSTTTTCSSCHHHH
T ss_pred CCCCCCCCCCceecCCCCeEcChhhcCCCCCCCC--CCCccccc-------------cCCCC----CcccCcccchhhhH
Confidence 6888899999999986789999999999999999 88888653 22211 14677888899762
Q ss_pred CCeEecCCCCC
Q psy14257 106 LRTCIPKALVC 116 (841)
Q Consensus 106 ~~~Ci~~~~~C 116 (841)
.+.||+....+
T Consensus 64 ~~~ci~~~~~g 74 (80)
T 2kny_A 64 LRVRLASHLRK 74 (80)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHH
Confidence 23566654443
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-09 Score=77.85 Aligned_cols=38 Identities=47% Similarity=1.096 Sum_probs=34.2
Q ss_pred CCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
..|...+|+|.+.++|||..|+|||..||. |||||.+|
T Consensus 2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~--DgSDE~~C 39 (42)
T 1cr8_A 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCM--DSSDEKSC 39 (42)
T ss_dssp CCSSTTCEECTTTCCEECGGGSSSSSCCSS--SSTTTTTC
T ss_pred CCCCCCceEeCCCCeEcChhhcCCCCcCCC--CCCcccCC
Confidence 468899999985699999999999999999 99999775
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-07 Score=92.47 Aligned_cols=111 Identities=12% Similarity=0.142 Sum_probs=72.9
Q ss_pred cccccceEEEEecCCCcEEEEccCC-ceEEEEecC----CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSG-QFRRTLIAG----DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~----~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
+.+.++.||.+| +.++|.+++... +..+.+... .+..++.|... +|.||.+.|. ...|.++++.-.....
T Consensus 141 Lt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~--s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 141 LCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWH--SSDVLEIDPATGTVVG 215 (268)
T ss_dssp EEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT--CSEEEEECTTTCBEEE
T ss_pred EecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECC--CCeEEEEeCCCCcEEE
Confidence 334456677776 366777777654 333322211 23456666664 7899999998 7899999986444433
Q ss_pred EEEec-cc-------CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 483 IVRVD-LL-------TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 483 i~~~~-~~-------~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
.+... +. .....-|||||+|+.+++||++.-.=.+++.+.+
T Consensus 216 ~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 216 VIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp EEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred EEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 33321 10 1133478999999999999999988788888865
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-06 Score=88.61 Aligned_cols=201 Identities=13% Similarity=0.077 Sum_probs=131.6
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-CCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEE
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 375 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~ 375 (841)
....||+++. +.+|+-=...+ ...|.++++. |+....+....-..+.||+++ +++||.++...+++.+
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g-------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETG-------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTT-------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred cccccEEEEC--CEEEEECCCCC-------CceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEE
Confidence 4567899884 45555211211 2378888875 444444433333344556665 7999999999999999
Q ss_pred EEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCc-eEEEEecC----CCCCceeEE
Q psy14257 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQ-FRRTLIAG----DMESPRAIA 450 (841)
Q Consensus 376 ~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~-~~~~l~~~----~l~~P~gia 450 (841)
++++......-+... . .++++.+.+++||++|. .++|.+.+...- ..+.+-.. .+..++.|.
T Consensus 90 ~D~~tl~~~~ti~~~----~--------~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 90 YDLATLTPRARFRYP----G--------EGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EETTTTEEEEEEECS----S--------CCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EECCcCcEEEEEeCC----C--------CceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 998765443333321 1 13455667799999995 889999998753 33333221 134555555
Q ss_pred EcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec-ccC-------CCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD-LLT-------SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 451 vd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~-~~~-------~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
.. +|.||...|. ...|.++++.-......+... +.+ ....-|||||+|+.+++||++.-.=.+++.+.
T Consensus 157 ~~--~G~lyanvw~--s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 157 WV--NGELLANVWL--TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp EE--TTEEEEEETT--TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred Ee--CCEEEEEECC--CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 43 7999999998 689999998644443333321 211 13347899999999999999998888998887
Q ss_pred cCC
Q psy14257 523 YDG 525 (841)
Q Consensus 523 ~dG 525 (841)
+..
T Consensus 233 ~~~ 235 (243)
T 3mbr_X 233 LTP 235 (243)
T ss_dssp ECC
T ss_pred Eec
Confidence 643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-07 Score=90.28 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=120.3
Q ss_pred eeEEEeccCCEEEEEeCCC--CeEEEEEcCCCe-eEEEEcCCCCCCcc--eEEEEecCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 497 NGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKD-HHVVLSNHDSLTHP--FAIALFENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~-~~~i~~~~~~l~~P--~gla~~~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
.||+++ +++||.+.... +.|.++|+.... .+.+.-. ..+ -||++.+++||++.|..+.+..++..+.+.
T Consensus 46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG----KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC----TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC----CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 899998 57999998654 499999997544 3444221 244 458889999999999999999999888776
Q ss_pred eEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeec-CCeEEEE
Q psy14257 572 VTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSR-PREIRGV 650 (841)
Q Consensus 572 ~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~-~~~i~~~ 650 (841)
+..+... +.|+.|..|+. .|++++ .+.|+.+
T Consensus 120 ~~ti~~~----------------------------------------~eG~glt~dg~--------~L~~SdGs~~i~~i 151 (262)
T 3nol_A 120 VRSFNYD----------------------------------------GEGWGLTHNDQ--------YLIMSDGTPVLRFL 151 (262)
T ss_dssp EEEEECS----------------------------------------SCCCCEEECSS--------CEEECCSSSEEEEE
T ss_pred EEEEECC----------------------------------------CCceEEecCCC--------EEEEECCCCeEEEE
Confidence 6554321 12333333322 233333 2334444
Q ss_pred ecCCCCccccceeecCC----CCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccC
Q psy14257 651 DLEHPYYHTIPTISIPQ----VFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVG 726 (841)
Q Consensus 651 ~l~~~~~~~~~~~~~~~----~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (841)
+. ........+++.. +..+..++|. +++||.....++.|.+++.....+...++ ++.+.... .
T Consensus 152 Dp--~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id------~~~L~~~~---~ 218 (262)
T 3nol_A 152 DP--ESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIID------LNGILAEA---G 218 (262)
T ss_dssp CT--TTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEE------CTTGGGGS---C
T ss_pred cC--CCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEE------CCcCcccc---c
Confidence 33 2222222333321 1333456665 78999888889999999997766222221 01110000 0
Q ss_pred ceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec
Q psy14257 727 GQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL 769 (841)
Q Consensus 727 ~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l 769 (841)
. .....+.|+|||+|+.+++||+| ...=+++..+++
T Consensus 219 ~-----~~~~~~vlNGIA~dp~~~~lfVT--GK~Wp~~~ev~~ 254 (262)
T 3nol_A 219 P-----LPSPIDVLNGIAWDKEHHRLFVT--GKLWPKVFEITL 254 (262)
T ss_dssp S-----CCSSCCCEEEEEEETTTTEEEEE--ETTCSEEEEEEE
T ss_pred c-----ccCcCCceEEEEEcCCCCEEEEE--CCCCCceEEEEE
Confidence 0 01234578999999999999999 444556555544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.79 E-value=0.00073 Score=78.00 Aligned_cols=311 Identities=14% Similarity=0.120 Sum_probs=182.9
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+.+.++-...+.|.+.+.+++...++.. ......++++.|...+|..... .+.|...+.++.....+. ..
T Consensus 192 ~~~l~~~~~d~~v~~w~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~~---d~~i~~w~~~~~~~~~~~------~~ 261 (577)
T 2ymu_A 192 GQTIASASDDKTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASD---DKTVKLWNRNGQLLQTLT------GH 261 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSCEEEEEEC-CSSCEEEEEECTTSSCEEEEET---TSCEEEECTTSCEEEEEC------CC
T ss_pred CCEEEEEcCCCEEEEEeCCCcEEEEEec-CCCCEEEEEECCCCCEEEEEeC---CCEEEEEeCCCCEEEEEe------cC
Confidence 4445555566788889988887766543 3456789999998666665543 356666677765444332 23
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
....+++++.+.+..|..+. ..+.|...+.++...+.+... .....++++. ++...++-...+.|...+.. +..
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~-~d~~i~~w~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~ 336 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGH---SSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQH 336 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CCCEEEEEEcCCCCEEEEEe-CCCEEEEEeCCCcEEEEEecC---CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCe
Confidence 45568899987666665444 467888889888776665432 2345677774 35555555555666655542 222
Q ss_pred eEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceee--eCCCCceeecCCCcccccCceeEEeec-CCeEE
Q psy14257 572 VTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKC--QCPHVMKLMSDNKTCQVADSQFIIFSR-PREIR 648 (841)
Q Consensus 572 ~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C--~Cp~g~~l~~d~~tC~~~~~~~l~~~~-~~~i~ 648 (841)
...+.... ....+ .-|+| .+|+.+. ...|+
T Consensus 337 ~~~~~~~~--------------------------------~~v~~~~~s~~g---------------~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 337 LQTLTGHS--------------------------------SSVWGVAFSPDG---------------QTIASASDDKTVK 369 (577)
T ss_dssp EEEECCCS--------------------------------SCEEEEEECTTS---------------SEEEEEETTSEEE
T ss_pred eEEEeCCC--------------------------------CCEEEEEECCCC---------------CEEEEEeCCCEEE
Confidence 22221100 00011 11222 1233322 23344
Q ss_pred EEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCce
Q psy14257 649 GVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQ 728 (841)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (841)
..+.+... +..+ ......+.+|+|.|..+.|.... ..+.|+..+.++..
T Consensus 370 ~~~~~~~~---~~~~-~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~~-------------------------- 418 (577)
T 2ymu_A 370 LWNRNGQL---LQTL-TGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQL-------------------------- 418 (577)
T ss_dssp EEETTCCE---EEEE-ECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCCE--------------------------
T ss_pred EEcCCCCE---EEEe-cCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCCE--------------------------
Confidence 44432221 1111 11224577899998888776665 56778877765543
Q ss_pred EEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEec
Q psy14257 729 IQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNV 808 (841)
Q Consensus 729 ~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~ 808 (841)
... +...-..+.+|++.+.++.|..+. ..++|.+.++++.....+... -....+|++.|...+|.-...
T Consensus 419 ~~~-~~~~~~~v~~~~~s~d~~~l~~~~---~d~~v~~w~~~~~~~~~~~~~-------~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 419 LQT-LTGHSSSVWGVAFSPDDQTIASAS---DDKTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp EEE-EECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTSCEEEEEECC-------SSCEEEEEECTTSCEEEEEET
T ss_pred EEE-ecCCCCCeEEEEECCCCCEEEEEc---CCCEEEEEECCCCEEEEEcCC-------CCCEEEEEEcCCCCEEEEEeC
Confidence 222 233445678899998887776662 467899999998876666543 357789999998666655443
Q ss_pred CCCcceEEEEecCCCceEEEec
Q psy14257 809 TKQVVTIEMAFMDGTKRETVVS 830 (841)
Q Consensus 809 ~~~~~~I~~~~~dG~~~~~l~~ 830 (841)
.. +|..-+.+|...+.+..
T Consensus 488 d~---~i~iw~~~~~~~~~~~~ 506 (577)
T 2ymu_A 488 DK---TVKLWNRNGQLLQTLTG 506 (577)
T ss_dssp TS---EEEEEETTSCEEEEEEC
T ss_pred CC---EEEEEcCCCCEEEEEeC
Confidence 32 46555666665555543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-06 Score=89.82 Aligned_cols=255 Identities=10% Similarity=-0.047 Sum_probs=153.6
Q ss_pred eEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccc
Q psy14257 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLV 344 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~ 344 (841)
+++++..++.|+..+...|. ..-..-......+..+++.+.+ ++++ +. .++|..++.+|+.+..+-
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~--~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~---------~~~V~~~d~~G~~~W~~~ 72 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKE--IVWEYPLEKGWECNSVAATKAG-EILF--SY---------SKGAKMITRDGRELWNIA 72 (276)
T ss_dssp EEEECTTCSEEEEEETTTTE--EEEEEECCTTCCCCEEEECTTS-CEEE--EC---------BSEEEEECTTSCEEEEEE
T ss_pred EEEeeCCCCEEEEEECCCCe--EEEEeCCCccCCCcCeEECCCC-CEEE--eC---------CCCEEEECCCCCEEEEEc
Confidence 55555555566555553332 1111111111357778888754 5554 32 247888888887666554
Q ss_pred ccCcCCCceEEEEccCCEEEEEeCC-CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC
Q psy14257 345 TKNIQWPSSLVIDYNQDILYWCDSH-LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD 423 (841)
Q Consensus 345 ~~~~~~P~glavD~~~~~lYwaD~~-~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~ 423 (841)
...-....++++.+ ++++++++.. .++|..++.+|+....+-..... ..... .....+++ .++++++++...+
T Consensus 73 ~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~--~~~~~--~~~~v~~~-~~G~~lv~~~~~~ 146 (276)
T 3no2_A 73 APAGCEMQTARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGI--ERPHA--QFRQINKN-KKGNYLVPLFATS 146 (276)
T ss_dssp CCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSC--SSGGG--SCSCCEEC-TTSCEEEEETTTT
T ss_pred CCCCccccccEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCC--Ccccc--cccCceEC-CCCCEEEEecCCC
Confidence 32111234555554 4566777776 88898888888765543211100 00000 00001111 2378899999999
Q ss_pred cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCCceeEEEe
Q psy14257 424 QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAWPNGLTLD 502 (841)
Q Consensus 424 ~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~P~glalD 502 (841)
+|..++.+|+..-.+-.. ..|.++++.+. |.+++++.. ..+|..++.+ |+....+...+.....+..|.+++++
T Consensus 147 ~v~~~d~~G~~~w~~~~~--~~~~~~~~~~~-g~~~v~~~~--~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 147 EVREIAPNGQLLNSVKLS--GTPFSSAFLDN-GDCLVACGD--AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp EEEEECTTSCEEEEEECS--SCCCEEEECTT-SCEEEECBT--TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEECC--CCccceeEcCC-CCEEEEeCC--CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence 999999999887665543 47899999875 777888876 6789999998 87766665322222357789999998
Q ss_pred ccCCEEEEEeCC----------CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE
Q psy14257 503 YQLTRIYWIDAK----------SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546 (841)
Q Consensus 503 ~~~~~LYw~d~~----------~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~ 546 (841)
.++++|+++.. ..++..++.+|+-+-.+... ..+..+.+|..
T Consensus 222 -~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~-~~~~~~~~~~~ 273 (276)
T 3no2_A 222 -QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK-VKFGMISTICP 273 (276)
T ss_dssp -TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT-TTSCCCCEEEE
T ss_pred -CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc-ccccceeeeee
Confidence 47899999852 33577777777655444332 33455555543
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-09 Score=75.18 Aligned_cols=36 Identities=47% Similarity=1.146 Sum_probs=33.0
Q ss_pred CCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 31 ~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.|...+|+|. +++||+..|+|||..||. |||||.+|
T Consensus 1 ~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~--DgsDE~~C 36 (37)
T 1ajj_A 1 PCSAFEFHCL-SGECIHSSWRCDGGPDCK--DKSDEENC 36 (37)
T ss_dssp CCCTTCEECT-TSCEECGGGTTSSSCCST--TCGGGTTC
T ss_pred CCCCCceEcC-CCCeechhhccCCCCCCC--CCccccCC
Confidence 4788999998 889999999999999999 99999775
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.1e-07 Score=94.87 Aligned_cols=216 Identities=9% Similarity=0.002 Sum_probs=145.6
Q ss_pred CCCCEEEEcc-CCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCcc-ccCCC
Q psy14257 326 SDGGIEKAGM-HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRV-GIPNC 403 (841)
Q Consensus 326 ~~~~I~~~~~-dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~-~i~~~ 403 (841)
.+++|..++. +|+.+..+.......+..++++++++ ||++ ..+.|+.++.+|+....+.... ...+ +.
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~~G~~~W~~~~~~----~~~~~~~--- 82 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITRDGRELWNIAAPA----GCEMQTA--- 82 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECTTSCEEEEEECCT----TCEEEEE---
T ss_pred CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECCCCCEEEEEcCCC----Ccccccc---
Confidence 3456666666 66655554433334688899988665 4443 3567888888776444432110 0000 00
Q ss_pred CCCccccccceEEEEecC-CCcEEEEccCCceEEEEecC-C----CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC
Q psy14257 404 RPEDNLWIGKNLYWVESN-LDQIEVAKLSGQFRRTLIAG-D----MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG 477 (841)
Q Consensus 404 ~~~avdw~~~~LY~tD~~-~~~I~v~~~~G~~~~~l~~~-~----l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG 477 (841)
.+ ..++++++++.. .++|..++.+|+....+... . ...|+++++++. |.+++++.. .++|..++.+|
T Consensus 83 ---~~-~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-G~~lv~~~~--~~~v~~~d~~G 155 (276)
T 3no2_A 83 ---RI-LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKK-GNYLVPLFA--TSEVREIAPNG 155 (276)
T ss_dssp ---EE-CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTT-SCEEEEETT--TTEEEEECTTS
T ss_pred ---EE-CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCC-CCEEEEecC--CCEEEEECCCC
Confidence 00 123888999887 88999999999876654321 1 235788999875 667788876 78999999997
Q ss_pred CCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCC---CCCCcceEEEE-ecCeEE
Q psy14257 478 EHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNH---DSLTHPFAIAL-FENHVY 552 (841)
Q Consensus 478 ~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~---~~l~~P~gla~-~~~~lY 552 (841)
+....+.. -..|.+.+++ .++++++++...++|..++++ |+.+-.+.... ..+..|.++++ .++.+|
T Consensus 156 ~~~w~~~~-------~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKL-------SGTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp CEEEEEEC-------SSCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred CEEEEEEC-------CCCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence 65544432 2468888887 468899999888999999999 88887776431 13567899998 579999
Q ss_pred EEeCCC----------CeEEEEec
Q psy14257 553 WTDWRT----------NSVIRANK 566 (841)
Q Consensus 553 ~td~~~----------~~i~~~~~ 566 (841)
+++++. ..++.+++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECT
T ss_pred EEeccCccccccccCCceEEEECC
Confidence 999743 35777765
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-09 Score=74.52 Aligned_cols=36 Identities=39% Similarity=1.180 Sum_probs=32.4
Q ss_pred CCCCCcccCC-CCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 32 CDESHFTCNE-TLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 32 C~~~~~~C~~-~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
|.+.+|+|.+ .++|||..|+|||..||. |+|||.+|
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~--dgsDE~~C 37 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCD--SGEDEENC 37 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCST--TTTTSTTC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCc--CCcccccC
Confidence 6789999984 489999999999999999 99999775
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-11 Score=116.87 Aligned_cols=52 Identities=31% Similarity=0.737 Sum_probs=46.5
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCcccC-CCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 12 GDEDCKDGSDELAEHCQDRKCDESHFTCN-ETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 12 g~~dC~dgsde~~~~C~~~~C~~~~~~C~-~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
+..+|.|+|||. +| ..|.+.+|+|. .+++|||..|+|||..||. |||||.+|
T Consensus 39 ~~~~c~d~sDE~--~C--~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~--DgSDE~~C 91 (215)
T 2gtl_O 39 KAGSLRHRVEEL--ED--PSCDEHEHQCGGDDPQCISKLFVCDGHNDCR--NGEDEKDC 91 (215)
T ss_dssp HHHHHHHHHHHH--SC--CSSCTTEEECCSSSCCEEEGGGTTSSSCCSS--SCHHHHCC
T ss_pred ccccCCcchhhc--cC--CCCCCcceeeCCCCCcCccccccCCCCCcCC--CcccccCC
Confidence 345899999999 88 47999999994 3899999999999999999 99999887
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-09 Score=76.67 Aligned_cols=39 Identities=41% Similarity=1.037 Sum_probs=34.7
Q ss_pred CCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 29 DRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 29 ~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
...|...+|+|.+.++|||..|+|||..||. |+|||.+|
T Consensus 4 ~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~--DgSDE~~C 42 (43)
T 2jm4_A 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCG--NQADEDNC 42 (43)
T ss_dssp SCSCCTTEEECSSSSCEEEGGGTTSSCCCSS--SCCTTSSC
T ss_pred CCCCCCCeeECCCCCeEcCHhhccCCCCCCC--CCcccCCC
Confidence 4678899999984489999999999999999 99999776
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.2e-09 Score=98.36 Aligned_cols=76 Identities=26% Similarity=0.636 Sum_probs=65.6
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccccccccCC-CCCccCce-eecCCCCceEEeecCCeeecCC
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEA-WGTCSQDC-EPSVSNNSYKCTCHAGYELEPD 207 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~-~~~Cs~~C-~~~~~~g~~~C~C~~G~~l~~d 207 (841)
++|. ..+|.+ .|.+++++|.|.|++||. |..|+++++|.. .+.|.+.| .++ .++|+|.|++||.+..+
T Consensus 49 deC~--~~pC~n~g~C~~~~~~y~C~C~~G~~----G~~C~~~deC~~~~~~C~~~C~~n~--~g~y~C~C~~Gy~l~~d 120 (146)
T 1x7a_L 49 DQCE--PNPCLNGGLCKDDINSYECWCQVGFE----GKNCELDATCNIKNGRCKQFCKTGA--DSKVLCSCTTGYRLAPD 120 (146)
T ss_dssp -CCS--SCSSCTTCEEEECSSCEEEECCSSEE----STTTCEECCTTSGGGSCSSBCCCCS--SSCCCCBCCTTEEECTT
T ss_pred CcCC--CCCCCCCCEeECCCCCEEEecCCCCc----CCcCCCCccccCCCCCCcCCCCCCC--CCCEEeEcCCCcEeCCC
Confidence 5665 346764 899999999999999997 778999999974 46898999 999 99999999999999999
Q ss_pred CCceEeCC
Q psy14257 208 MFTCKSKS 215 (841)
Q Consensus 208 ~~~C~~~~ 215 (841)
++.|.++.
T Consensus 121 G~~C~~~~ 128 (146)
T 1x7a_L 121 QKSCKPAV 128 (146)
T ss_dssp SSSEEECS
T ss_pred CCcCCCCC
Confidence 99999873
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-09 Score=76.73 Aligned_cols=37 Identities=43% Similarity=0.993 Sum_probs=33.8
Q ss_pred CCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
..|...+|+|. +++|||..|+|||..||. |||||..|
T Consensus 4 ~~C~~~~F~C~-~g~CI~~~~~CDG~~DC~--DgSDE~~c 40 (45)
T 1d2l_A 4 PQCQPGEFACA-NSRCIQERWKCDGDNDCL--DNSDEAPA 40 (45)
T ss_dssp CBTTBTCEEET-TTEEECGGGTTTSSCTTT--TCSTTSTT
T ss_pred CcCCCCceEcC-CCCeEehhhccCCCCCCC--CCCCCCCC
Confidence 57888999998 899999999999999999 99999764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.6e-06 Score=87.40 Aligned_cols=290 Identities=8% Similarity=0.036 Sum_probs=163.5
Q ss_pred ceEEEEecCCCcEEEEccCCc-eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQ-FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
+++|++....+.|.+.++... ....+-......|.+++++|.++++|++... .+.|+..+++.......+.. .
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--~~~i~~~d~~t~~~~~~~~~----~ 84 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--YGDIYGIDLDTCKNTFHANL----S 84 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEES----C
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC--CCcEEEEeCCCCcEEEEEEc----c
Confidence 889999999999999998754 4444332322369999999988889999866 68999999875443333331 1
Q ss_pred C-----CCCceeEEEeccCCEEEEEeCC-----------CCeEEEEEcCCCe-eE--EEEcCCCCCCcceEEEEe-cCeE
Q psy14257 492 R-----GAWPNGLTLDYQLTRIYWIDAK-----------SDSIHTVTYDGKD-HH--VVLSNHDSLTHPFAIALF-ENHV 551 (841)
Q Consensus 492 ~-----~~~P~glalD~~~~~LYw~d~~-----------~~~I~~~~~dG~~-~~--~i~~~~~~l~~P~gla~~-~~~l 551 (841)
. ...|.++++++.+++||++... .+.|..+++.... .+ ...... ..+.++++. ++.+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~l 161 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGSL 161 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSCE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCcE
Confidence 1 2348999999988999998854 5789999987521 11 112221 246777774 4668
Q ss_pred EEEeCCCCeEEEEeccCCcceEEEeccc-CCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCc
Q psy14257 552 YWTDWRTNSVIRANKWNGSDVTLIQRTL-TQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKT 630 (841)
Q Consensus 552 Y~td~~~~~i~~~~~~~g~~~~~i~~~~-~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~t 630 (841)
|++. +.|..++..+++....+.... ..|.. ..|... .... .+.=.+ .-.-|.+..+..|+..
T Consensus 162 ~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~-~~~~~~----------~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 162 YVAG---PDIYKMDVKTGKYTVALPLRNWNRKGY--SAPDVL-YFWP-HQSPRH----------EFSMLYTIARFKDDKQ 224 (349)
T ss_dssp EEES---SSEEEECTTTCCEEEEECSTTCCCTTB--CCCBCC-CCCC-CCCTTC----------EEEEEEEEEEC-----
T ss_pred EEcc---CcEEEEeCCCCceeccccccccCCccc--cCccce-eeec-CCCcce----------eEEeeeeeeecCCCcC
Confidence 8864 348888877776554433211 00000 000000 0000 000000 0000111111111100
Q ss_pred ccc-cCceeEEe---ecCCeEEEEecCCCCccccceeecCCCCCceEEEEec-CCCEEEEEECCCCeEEEEEcccCceee
Q psy14257 631 CQV-ADSQFIIF---SRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDA-ANKKIYWTDQEYNEVKRSSIVGGQIQL 705 (841)
Q Consensus 631 C~~-~~~~~l~~---~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~~iyw~d~~~~~I~~~~~~g~~~~~ 705 (841)
-.. ....+.++ .....+..+.++ + .-..+.+++++| ..+.+|.+ .+.|+++++....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~--- 286 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEFA----------D--LTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRK--- 286 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEE----------E--CSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTE---
T ss_pred CccccccceeEEEEeccCCcEEecccc----------c--CCCcceeeEecCCCCCEEEEE---cCeEEEEECccCe---
Confidence 000 00011111 111222222221 1 113567899999 88899988 6789999887644
Q ss_pred eeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcc
Q psy14257 706 VVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773 (841)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~ 773 (841)
....+. .-..|.++++++.++.||.+ . ..++|.+++++...
T Consensus 287 -----------------------~~~~~~-~~~~~~~~~~s~dg~~l~~~--~-~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 287 -----------------------LIKAAN-LDHTYYCVAFDKKGDKLYLG--G-TFNDLAVFNPDTLE 327 (349)
T ss_dssp -----------------------EEEEEE-CSSCCCEEEECSSSSCEEEE--S-BSSEEEEEETTTTE
T ss_pred -----------------------EEEEEc-CCCCccceEECCCCCEEEEe--c-CCCeEEEEeccccc
Confidence 222222 22468999999999999997 3 35889999987543
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-09 Score=77.33 Aligned_cols=38 Identities=47% Similarity=1.187 Sum_probs=32.7
Q ss_pred CCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 29 DRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 29 ~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
...|...+|+|. +++|||..|+|||..||. |+|||.+|
T Consensus 5 ~~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~--DgSDE~~C 42 (44)
T 3a7q_B 5 AKECEKDQFQCR-NERCIPSVWRCDEDDDCL--DHSDEDDC 42 (44)
T ss_dssp ---CCTTEEECT-TSCEEEGGGTTSSSCCSS--SSTTTSCC
T ss_pred CCCCCCCceEcC-CCCEeChhhccCCCCCCC--CCccccCC
Confidence 357889999998 799999999999999999 99999776
|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-09 Score=80.47 Aligned_cols=38 Identities=42% Similarity=1.105 Sum_probs=34.5
Q ss_pred CCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 29 DRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 29 ~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
+..|.+++|+|. +++|||..|+|||..||. |||||.+|
T Consensus 4 p~~C~~~~F~C~-nG~CIp~~~~CDG~~DC~--DgSDE~~~ 41 (52)
T 2m0p_A 4 PASCLDTQYTCD-NHQCISKNWVCDTDNDCG--DGSDEKNC 41 (52)
T ss_dssp CCSSCSSEEECT-TCCEEETTSTTSSSCSSS--SCHHHHSC
T ss_pred CCCCCCCceECC-CCCEEecCccCCCCCCCC--CCCccccc
Confidence 467999999998 899999999999999999 99998765
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.2e-09 Score=78.22 Aligned_cols=38 Identities=45% Similarity=1.082 Sum_probs=33.9
Q ss_pred CCCCCCCcccCC----CCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNE----TLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~----~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
..|.+.+|+|.. +++|||..|+|||..||. |||||.+|
T Consensus 5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~--DgSDE~~C 46 (47)
T 1k7b_A 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD--DGRDEWGC 46 (47)
T ss_dssp -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSS--SSTTTGGG
T ss_pred CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCC--CCcccCCC
Confidence 568899999975 789999999999999999 99999876
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=93.07 Aligned_cols=95 Identities=23% Similarity=0.664 Sum_probs=76.1
Q ss_pred CcccCCCCCeEecC--CCCCCCCCCCCCCCCCccc----ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 99 EFDCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC----DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 99 ~~~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
...|.+. +.|++. ++.| .|+.||.+..| ++|.. .+|. ..|.++.++|+|.|++||. +..|+
T Consensus 12 ~~~C~~~-g~C~~~~g~~~C----~C~~Gy~G~~C~~~~~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~----G~~C~ 80 (135)
T 2vj3_A 12 ANPCEHA-GKCINTLGSFEC----QCLQGYTGPRCEIDVNECVS--NPCQNDATCLDQIGEFQCICMPGYE----GVHCE 80 (135)
T ss_dssp SCSSSTT-CEEEECSSSEEE----ECCTTEESTTSCEECCTTTT--CCCCSSCEEEECSSCEEEECCTTEE----SSSSC
T ss_pred CCCCCCC-CEeECCCCCEEE----ECCCCCcCCcccccCccCCC--CCCCCCCEEeCCCCCceeeCCCCCc----CCcce
Confidence 3468776 899876 6789 89999987777 57763 4665 4899999999999999997 56786
Q ss_pred -cccccCCCCCcc--CceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 171 -YLHPCEAWGTCS--QDCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 171 -~~~eC~~~~~Cs--~~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
++++|. ..+|. ..|.++ .++|+|.|++||. +..|
T Consensus 81 ~~~~~C~-~~~C~~~g~C~~~--~g~~~C~C~~G~~----G~~C 117 (135)
T 2vj3_A 81 VNTDECA-SSPCLHNGRCLDK--INEFQCECPTGFT----GHLC 117 (135)
T ss_dssp EECCTTT-TCCSTTTCEEEEC--SSCEEEECCTTEE----SSSS
T ss_pred ecCCccc-CCCcCCCCEeECC--CCCeEEECCCCCc----CCcc
Confidence 788995 34675 489998 8999999999997 3466
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-09 Score=78.24 Aligned_cols=38 Identities=42% Similarity=1.018 Sum_probs=34.0
Q ss_pred CCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
..|.+.+|+|..+++|||..|+|||..||. |||||..|
T Consensus 5 ~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~--DgSDE~~C 42 (50)
T 2knx_A 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCA--DGADESIA 42 (50)
T ss_dssp CTTCTTEEEETTTTEEEETTTTTSSSCCST--TCGGGSGG
T ss_pred CCCCCCcEEcCCCCeEcChhhcCCCCCCCC--CCCccccc
Confidence 568899999965899999999999999999 88888765
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-09 Score=120.92 Aligned_cols=61 Identities=41% Similarity=0.861 Sum_probs=56.2
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
+||+..|+|||..||.|||||. +|.. |++.+|+|. ++.|++..++|||..||. |++||.+|
T Consensus 215 ~ci~~~~~Cdg~~dC~d~sDE~--~C~~--c~~~~~~C~-~~~C~~~~~~cdG~~dC~--~gsDE~~C 275 (565)
T 2xrc_A 215 KYISQMKACDGINDCGDQSDEL--CCKA--CQGKGFHCK-SGVCIPSQYQCNGEVDCI--TGEDEVGC 275 (565)
T ss_dssp CBCCTTSTTSSSCCSSSSSSSS--SBSS--CSSSCEEET-TTEEECGGGTTSSSCCSS--SCTTSSSC
T ss_pred CccCHHHcCCCcccCCCCcccc--cccc--cCCCceecC-CCcccCccccCCCcccCC--CCccccCc
Confidence 5999999999999999999999 7864 999999998 888999999999999999 88888664
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-06 Score=89.19 Aligned_cols=266 Identities=9% Similarity=-0.034 Sum_probs=152.4
Q ss_pred eEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccc-cc
Q psy14257 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRS-PL 343 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~-~l 343 (841)
+|.+....++|++.++.++. ....+-......|.++++++.++.+|+ +. ..++.|.+++++..... .+
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~~~v--~~-------~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPDNRTAYV--LN-------NHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp EEEEEETTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTTSSEEEE--EE-------TTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCc--EEEEEecCCCCCCceeEECCCCCEEEE--Ee-------CCCCcEEEEeCCCCcEEEEE
Confidence 88888888999988877654 222222222226899999886654554 32 23468999988644332 22
Q ss_pred cccC-----cCCCceEEEEccCCEEEEEeCC-----------CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 344 VTKN-----IQWPSSLVIDYNQDILYWCDSH-----------LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 344 ~~~~-----~~~P~glavD~~~~~lYwaD~~-----------~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
.... ...|.++++++++++||++... .+.|..+++........... ...+..+ ..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~-----~~~~ 154 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--FPMPRQV-----YLMR 154 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--EECCSSC-----CCEE
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--ccCCCcc-----ccee
Confidence 2111 2348999999999999999854 57899999875322111000 0011100 0011
Q ss_pred cccccceEEEEecCCCcEEEEccCC-ceEEEEecCCCC-----------------------CceeEEEcCCC--------
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSG-QFRRTLIAGDME-----------------------SPRAIALDPRF-------- 455 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~-----------------------~P~giavd~~~-------- 455 (841)
++.. ++||+++ +.|.++++.. +....+-..... .|.++++.+..
T Consensus 155 ~s~d-g~l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 155 AADD-GSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp ECTT-SCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred ECCC-CcEEEcc---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 2222 4488853 3488888854 444433222101 45556665331
Q ss_pred -CeEEE-EecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec-cCCEEEEEeCCCCeEEEEEcCCCeeEEEE
Q psy14257 456 -GLLFW-TDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY-QLTRIYWIDAKSDSIHTVTYDGKDHHVVL 532 (841)
Q Consensus 456 -g~Ly~-td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~-~~~~LYw~d~~~~~I~~~~~dG~~~~~i~ 532 (841)
+..|+ .+.. .+++....+ . ..-..|.++++++ .++.||++ .+.|..+++........+
T Consensus 231 ~~~~~~~~~~~--~~~~~~~~~---------~-----~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~ 291 (349)
T 1jmx_B 231 LLYGYLSVDLK--TGKTHTQEF---------A-----DLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAA 291 (349)
T ss_dssp EEEEEEEEETT--TCCEEEEEE---------E-----ECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEE
T ss_pred cceeEEEEecc--CCcEEeccc---------c-----cCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEE
Confidence 12222 2222 222222221 1 1234688999998 88899988 579999999865543333
Q ss_pred cCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 533 SNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 533 ~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
... ..|.++++. +.+||++ ...+.|..++..+++.+..+
T Consensus 292 ~~~---~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 292 NLD---HTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS---SCCCEEEECSSSSCEEEE-SBSSEEEEEETTTTEEEEEE
T ss_pred cCC---CCccceEECCCCCEEEEe-cCCCeEEEEeccccceeeee
Confidence 321 357888885 3578886 44588888887776655444
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.2e-09 Score=78.48 Aligned_cols=40 Identities=38% Similarity=0.811 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCcccCCCC-eEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 26 HCQDRKCDESHFTCNETL-RCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 26 ~C~~~~C~~~~~~C~~~~-~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
+|+ ..|.+.+|+|. ++ +||+..|+|||..||. |||||.+|
T Consensus 2 ~C~-~~C~~~~F~C~-~g~~CI~~~~~CDG~~DC~--DgSDE~~C 42 (48)
T 2i1p_A 2 AMV-LNCTSAQFKCA-DGSSCINSRYRCDGVYDCR--DNSDEAGC 42 (48)
T ss_dssp CSC-CCCCSSSEECS-SSSCEECGGGSSSSSCCSS--SSHHHHSS
T ss_pred CCC-CCCCCCeeECC-CCCEeCCHhhcCCCCCCCC--CCcccccC
Confidence 476 78999999998 56 8999999999999999 88888765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-06 Score=93.47 Aligned_cols=239 Identities=12% Similarity=0.059 Sum_probs=145.4
Q ss_pred cceeEEEecCCCeEEEEEecCC--cccceEEE----E--eCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEE
Q psy14257 262 ANMVFWTDVIDDKIYNATLIGN--SLSNIDVV----V--QTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKA 333 (841)
Q Consensus 262 ~~~lyw~d~~~~~I~~~~~~~~--~~~~~~~~----~--~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~ 333 (841)
++.||+.....++|+++++... .....+++ + ..++..|+++++-+.+ + |++..+... ....+.|...
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i--~Vs~~g~~~-g~~~g~v~vl 169 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--I--YISALGNEE-GEGPGGILML 169 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--E--EEEEEEETT-SCSCCEEEEE
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--E--EEEcCCCcC-CCCCCeEEEE
Confidence 4459999999999999987422 21122222 1 3366689988887654 4 446555421 2234678888
Q ss_pred ccC-CCcccccccc--CcCCCceEEEEccCCEEEEEeC------------------CCCeEEEEEecCCccEEEEeeeee
Q psy14257 334 GMH-GENRSPLVTK--NIQWPSSLVIDYNQDILYWCDS------------------HLNTVESVRVDGSERTVSFNLEVL 392 (841)
Q Consensus 334 ~~d-G~~~~~l~~~--~~~~P~glavD~~~~~lYwaD~------------------~~~~I~~~~ldG~~~~~~~~~~~~ 392 (841)
+.. ++.+..+-.. ....+..+.+.+..+.+|.++. ..++|..++++.......+.+...
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 876 4433333212 2233444666778999999973 478999999986533322222100
Q ss_pred cCCCccccCCCCCCccccccceEEEEec-----CCCcEEEEccCCc-eE--EEE-ecC-----C-----------CCCce
Q psy14257 393 GSDSRVGIPNCRPEDNLWIGKNLYWVES-----NLDQIEVAKLSGQ-FR--RTL-IAG-----D-----------MESPR 447 (841)
Q Consensus 393 ~~~~~~~i~~~~~~avdw~~~~LY~tD~-----~~~~I~v~~~~G~-~~--~~l-~~~-----~-----------l~~P~ 447 (841)
+ ..+..+ ..+++..++.+|++.. ..+.|.++..++. .. .++ +.. . -..|.
T Consensus 250 g-~~P~~i----~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 250 N-RMALEL----RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp E-EEEEEE----EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred C-Ccccee----EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 0 000000 0123455688999988 7888887766542 11 111 111 0 14689
Q ss_pred eEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccC-----------CCCCCceeEEEeccCCEEEEEe
Q psy14257 448 AIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLT-----------SRGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 448 giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~-----------~~~~~P~glalD~~~~~LYw~d 512 (841)
+|++++++++||+++++ .+.|..++.+ ....+.+....... .....|.+++|++++++||+++
T Consensus 325 ~I~lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999999999999999 6788888874 43444443321110 0012699999999999999999
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-07 Score=105.26 Aligned_cols=159 Identities=13% Similarity=0.174 Sum_probs=108.0
Q ss_pred cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeee-eec----CCCccccCCCCCCccccc---cceE
Q psy14257 344 VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLE-VLG----SDSRVGIPNCRPEDNLWI---GKNL 415 (841)
Q Consensus 344 ~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~-~~~----~~~~~~i~~~~~~avdw~---~~~L 415 (841)
+...+..|.+|+++++ ++||+++...++|++++.++...+.+..+. .+. ....+|+ +++.. ++.|
T Consensus 22 ~a~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgi------a~~Pdf~~~g~l 94 (454)
T 1cru_A 22 ILSNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGF------AFHPDFKNNPYI 94 (454)
T ss_dssp EECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEE------EECTTTTTSCEE
T ss_pred EECCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEE------EECCCcCcCCEE
Confidence 3457889999999986 579999998889999987544344443322 111 1111122 23322 6999
Q ss_pred EEEecC------------CCcEEEEccCCc-----eEEEEec----CCCCCceeEEEcCCCCeEEEEecCC---------
Q psy14257 416 YWVESN------------LDQIEVAKLSGQ-----FRRTLIA----GDMESPRAIALDPRFGLLFWTDWDS--------- 465 (841)
Q Consensus 416 Y~tD~~------------~~~I~v~~~~G~-----~~~~l~~----~~l~~P~giavd~~~g~Ly~td~~~--------- 465 (841)
|++++. ..+|.++++++. ..++++. ...+.+.+|+++|+ |+||++....
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD-G~Lyv~~Gd~~~~~~~~~~ 173 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD-QKIYYTIGDQGRNQLAYLF 173 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT-SCEEEEECCTTTTSGGGTT
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC-CeEEEEECCCCCCCccccc
Confidence 999864 458888887542 2344442 23467999999985 8999995321
Q ss_pred ---------------------CCCeEEEecCCCCC----------cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC
Q psy14257 466 ---------------------KAPRIERCSMSGEH----------RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK 514 (841)
Q Consensus 466 ---------------------~~~~I~r~~ldG~~----------~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~ 514 (841)
..++|.|++.||+- +..+.. ..+..|.||++|+ +++||++|.+
T Consensus 174 ~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a-----~G~RNp~gla~dp-~G~L~~~d~g 247 (454)
T 1cru_A 174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYT-----LGHRNPQGLAFTP-NGKLLQSEQG 247 (454)
T ss_dssp SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEE-----BCCSEEEEEEECT-TSCEEEEEEC
T ss_pred cccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEE-----ECCCCcceEEECC-CCCEEEEecC
Confidence 14689999999982 223344 5889999999998 6999999975
Q ss_pred CC
Q psy14257 515 SD 516 (841)
Q Consensus 515 ~~ 516 (841)
.+
T Consensus 248 ~~ 249 (454)
T 1cru_A 248 PN 249 (454)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=5.2e-09 Score=77.11 Aligned_cols=38 Identities=45% Similarity=1.112 Sum_probs=34.3
Q ss_pred CCCCCCCcccCC----CCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNE----TLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~----~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
..|.+.+|+|.+ +++|||..|+|||..||. |||||.+|
T Consensus 3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~--DgSDE~~C 44 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD--DGRDEWGC 44 (47)
T ss_dssp CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSS--SSCTTHHH
T ss_pred CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCC--CCcccccC
Confidence 468899999985 689999999999999999 99999876
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=98.66 E-value=6.4e-09 Score=79.74 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=41.3
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccC
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~ 176 (841)
|||...++.|++.|.|++|+|+|.|++||.|.+|+++|.+++||.
T Consensus 2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~ 46 (55)
T 2jkh_L 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 46 (55)
T ss_dssp CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSC
T ss_pred ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcccc
Confidence 578766788999999999999999999999999999999999983
|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.4e-08 Score=113.33 Aligned_cols=104 Identities=29% Similarity=0.624 Sum_probs=83.5
Q ss_pred ccCCCCCeEecC---CCCCCCCCCCCCCCCC--ccc---ccccccCCCCCC-----CcccCCCCcEEe-cCCCceecC--
Q psy14257 101 DCQDVLRTCIPK---ALVCDGEPACFNGEDE--MFC---DEKQCLRSDCHH-----DCYNTPEGFMCV-CPRDMYLQP-- 164 (841)
Q Consensus 101 ~C~~~~~~Ci~~---~~~Cdg~~~C~~g~de--~~C---~eC~~~~~~C~~-----~C~~~~g~~~C~-C~~Gy~l~~-- 164 (841)
+|.++ +.|++. +|.|. .|+.||.+ ..| +||...++.|.+ .|.++.++|+|. |++||....
T Consensus 10 PC~~g-g~C~n~~~Gsy~C~---~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~ 85 (634)
T 1yo8_A 10 PCFPG-AQCSSFPDGSWSCG---FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPV 85 (634)
T ss_dssp CSCTT-CCEEECTTSCEEEC---CCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCE
T ss_pred CCCCC-CEEecCCCCCeECC---cCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCccc
Confidence 47665 788875 37783 59999965 568 799876667965 799999999998 999998643
Q ss_pred ---------CCCccccccccCC-CCCcc--CceeecCCC----CceEEeecCCeeecCCCCceE
Q psy14257 165 ---------DLITCSYLHPCEA-WGTCS--QDCEPSVSN----NSYKCTCHAGYELEPDMFTCK 212 (841)
Q Consensus 165 ---------d~~~C~~~~eC~~-~~~Cs--~~C~~~~~~----g~~~C~C~~G~~l~~d~~~C~ 212 (841)
+++.|++++||.. ..+|. ..|.++ . ++|+|.|++||.. ++..|.
T Consensus 86 g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt--~~~~~GsY~C~C~~Gy~G--dG~~Ce 145 (634)
T 1yo8_A 86 GVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYL--GHFSDPMYKCECQTGYAG--DGLICG 145 (634)
T ss_dssp ESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEEC--CTTCSSSEEEEECTTEEE--SSSSEE
T ss_pred cccccccccCCCcccccccccCCCcccccCcccccc--ccccccceeeeccCCccc--cCcccc
Confidence 5677999999974 46896 489998 7 8999999999984 456786
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-06 Score=86.59 Aligned_cols=192 Identities=15% Similarity=0.020 Sum_probs=128.7
Q ss_pred ceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccC
Q psy14257 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS 431 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~ 431 (841)
.||+++ +++||.+....+.|.++++.......-. +. ..... +.++..+++||.+.+..+.+.+++++
T Consensus 58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~Fg--------eGit~~g~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFA--------EGLASDGERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCE--------EEEEECSSCEEEEESSSCEEEEEETT
T ss_pred ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcce--------eEEEEeCCEEEEEEccCCEEEEEECC
Confidence 588887 6899999999999999999755433222 21 11111 12344569999999999999999986
Q ss_pred C-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEE
Q psy14257 432 G-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYW 510 (841)
Q Consensus 432 G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw 510 (841)
. +...++-.. ..+.||+-| ++.||.++ + ..+|...+...-....-+........+..++.|... +++||.
T Consensus 125 Tl~~~~ti~~~--~eGwGLt~D--g~~L~vSd-G--s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lya 195 (268)
T 3nok_A 125 PPQRERTTRYS--GEGWGLCYW--NGKLVRSD-G--GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYA 195 (268)
T ss_dssp TTEEEEEEECS--SCCCCEEEE--TTEEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEE
T ss_pred cCcEEEEEeCC--CceeEEecC--CCEEEEEC-C--CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEE
Confidence 4 445554432 346677765 67999999 4 579999987654333333322222345566777765 789999
Q ss_pred EeCCCCeEEEEEcCCCeeEEEEcCC-----------CCCCcceEEEEe--cCeEEEEeCCCCeEEEEe
Q psy14257 511 IDAKSDSIHTVTYDGKDHHVVLSNH-----------DSLTHPFAIALF--ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 511 ~d~~~~~I~~~~~dG~~~~~i~~~~-----------~~l~~P~gla~~--~~~lY~td~~~~~i~~~~ 565 (841)
.....+.|.++|+....+...+.-. ....-|-|||+. .++||+|-..=..++++.
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~ 263 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR 263 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence 9988999999999755443333211 112367899996 489999975545665553
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.64 E-value=0.0019 Score=74.40 Aligned_cols=363 Identities=13% Similarity=0.089 Sum_probs=203.6
Q ss_pred CceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEcc
Q psy14257 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKL 430 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~ 430 (841)
...+++.+++..|+.. ...+.|...+.+|.....+.... ..... +++... +.+.++-...+.|.+.+.
T Consensus 183 v~~~~~~~~~~~l~~~-~~d~~v~~w~~~~~~~~~~~~~~----~~v~~------~~~s~d-g~~l~~~~~d~~i~~w~~ 250 (577)
T 2ymu_A 183 VWGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHS----SSVRG------VAFSPD-GQTIASASDDKTVKLWNR 250 (577)
T ss_dssp EEEEEECTTSSCEEEE-ETTSEEEEECTTSCEEEEEECCS----SCEEE------EEECTT-SSCEEEEETTSCEEEECT
T ss_pred eeeeeecCCCCEEEEE-cCCCEEEEEeCCCcEEEEEecCC----CCEEE------EEECCC-CCEEEEEeCCCEEEEEeC
Confidence 3456666555544433 34556666666554433322100 00000 011111 334444445678888898
Q ss_pred CCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEE
Q psy14257 431 SGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYW 510 (841)
Q Consensus 431 ~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw 510 (841)
+++....+.. ......++++.|....|..... ...|...+.++.....+. ..-....++++.+.+..|..
T Consensus 251 ~~~~~~~~~~-~~~~v~~v~~~~d~~~l~~~~~---d~~i~~w~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 251 NGQLLQTLTG-HSSSVNGVAFRPDGQTIASASD---DKTVKLWNRNGQLLQTLT------GHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp TSCEEEEECC-CSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSCEEEEEC------CCSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEec-CCCCEEEEEEcCCCCEEEEEeC---CCEEEEEeCCCcEEEEEe------cCCCCeEEEEECCCCCEEEE
Confidence 8887766543 3456789999988666655443 456776677765444432 23345678999876666554
Q ss_pred EeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCC
Q psy14257 511 IDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGV 589 (841)
Q Consensus 511 ~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp 589 (841)
+ ...+.|...++++.....+... -....++++. ++....+-...+.|...+. +++....+....
T Consensus 321 ~-~~d~~i~~w~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~---------- 385 (577)
T 2ymu_A 321 A-SDDKTVKLWNRNGQHLQTLTGH---SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------- 385 (577)
T ss_dssp E-ETTSCEEEEETTSCEEEEECCC---SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS----------
T ss_pred E-eCCCeEEEEeCCCCeeEEEeCC---CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC----------
Confidence 4 4467888889988877665432 2345677774 3444444445556655553 333222221100
Q ss_pred cccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeec-CCeEEEEecCCCCccccceeecCCC
Q psy14257 590 VKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSR-PREIRGVDLEHPYYHTIPTISIPQV 668 (841)
Q Consensus 590 ~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~-~~~i~~~~l~~~~~~~~~~~~~~~~ 668 (841)
...++. .+.+|+ .+|+.+. ...|+..+.+... +..+ ....
T Consensus 386 ----------------------~~v~~~-----~~s~dg--------~~l~~~~~d~~v~~~~~~~~~---~~~~-~~~~ 426 (577)
T 2ymu_A 386 ----------------------SSVRGV-----AFSPDG--------QTIASASDDKTVKLWNRNGQL---LQTL-TGHS 426 (577)
T ss_dssp ----------------------SCEEEE-----EECTTS--------SCEEEEETTSEEEEECTTCCE---EEEE-ECCS
T ss_pred ----------------------CCeEEE-----EECCCC--------CEEEEEeCCCEEEEEeCCCCE---EEEe-cCCC
Confidence 001111 111121 2233332 2334444332211 1111 1122
Q ss_pred CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeec
Q psy14257 669 FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~ 748 (841)
..+.+|+|.|.++.|.... ..++|+..++++.. ... +......+..|++.+.
T Consensus 427 ~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~~--------------------------~~~-~~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 427 SSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQL--------------------------LQT-LTGHSSSVRGVAFSPD 478 (577)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTSEEEEEETTSCE--------------------------EEE-EECCSSCEEEEEECTT
T ss_pred CCeEEEEECCCCCEEEEEc-CCCEEEEEECCCCE--------------------------EEE-EcCCCCCEEEEEEcCC
Confidence 4567899999888777665 57888888876644 222 2334566789999998
Q ss_pred CCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCceEEE
Q psy14257 749 AQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV 828 (841)
Q Consensus 749 ~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~~~l 828 (841)
++.|..+. ..++|.+.+++|+..+.+... -....+|++.|...+|.-.... +.|.--+++|.....+
T Consensus 479 ~~~las~~---~d~~i~iw~~~~~~~~~~~~h-------~~~v~~l~~s~dg~~l~s~~~d---g~v~lwd~~~~~~~~~ 545 (577)
T 2ymu_A 479 GQTIASAS---DDKTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSPDGQTIASASDD---KTVKLWNRNGQLLQTL 545 (577)
T ss_dssp SCEEEEEE---TTSEEEEEETTSCEEEEEECC-------SSCEEEEEECTTSSCEEEEETT---SEEEEECTTSCEEEEE
T ss_pred CCEEEEEe---CCCEEEEEcCCCCEEEEEeCC-------CCCEEEEEEcCCCCEEEEEECc---CEEEEEeCCCCEEEEE
Confidence 87776663 467899999999877666543 3578899999987777655433 2566666777665555
Q ss_pred ec
Q psy14257 829 VS 830 (841)
Q Consensus 829 ~~ 830 (841)
..
T Consensus 546 ~~ 547 (577)
T 2ymu_A 546 TG 547 (577)
T ss_dssp EC
T ss_pred cC
Confidence 43
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-09 Score=101.84 Aligned_cols=104 Identities=21% Similarity=0.499 Sum_probs=72.1
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCC----Cccc---cc--ccccCCCC----CCCcccCCC----CcEEecCC---
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGED----EMFC---DE--KQCLRSDC----HHDCYNTPE----GFMCVCPR--- 158 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~d----e~~C---~e--C~~~~~~C----~~~C~~~~g----~~~C~C~~--- 158 (841)
.|.+ +.|++. +|.| .|++||. +..| ++ |......| ...|.++.+ +|.|.|++
T Consensus 11 ~C~~--~~C~n~~gsy~C----~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~ 84 (162)
T 1uzk_A 11 TCIS--GNCVNTPGSYIC----DCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA 84 (162)
T ss_dssp SSBT--SEEEEETTEEEE----ECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCE
T ss_pred CCCC--CEeECCCCCEEE----eCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCC
Confidence 4653 677765 7888 8999984 5667 34 65433333 346666554 45555544
Q ss_pred ------------------------CceecCCCCccccccccC-CCCCccC-ceeecCCCCceEEeecCCeeecCCCCceE
Q psy14257 159 ------------------------DMYLQPDLITCSYLHPCE-AWGTCSQ-DCEPSVSNNSYKCTCHAGYELEPDMFTCK 212 (841)
Q Consensus 159 ------------------------Gy~l~~d~~~C~~~~eC~-~~~~Cs~-~C~~~~~~g~~~C~C~~G~~l~~d~~~C~ 212 (841)
||.+.++++.|++++||. ..+.|.+ .|+++ .++|+|.|++||.+..++++|.
T Consensus 85 ~~~~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~g~C~n~--~gsy~C~C~~Gy~g~~d~~~C~ 162 (162)
T 1uzk_A 85 WGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINT--FGSFQCRCPTGYYLNEDTRVCD 162 (162)
T ss_dssp ETTTTEECCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBTSEEEEC--SSCEEEECCTTCCBCTTTCBBC
T ss_pred cCCCcccCCCCCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCCCEeEcC--CCCEEeeCCCCccCCCCCCccC
Confidence 566555667899999997 3467874 89999 9999999999999999888873
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
Probab=98.60 E-value=7.3e-09 Score=102.11 Aligned_cols=102 Identities=24% Similarity=0.639 Sum_probs=80.0
Q ss_pred cccCCCCCeEecC-------CCCCCCCCCCCCCCCCcc--c--ccccccCCCCC--CCcc----cCCCCcEEecCCCcee
Q psy14257 100 FDCQDVLRTCIPK-------ALVCDGEPACFNGEDEMF--C--DEKQCLRSDCH--HDCY----NTPEGFMCVCPRDMYL 162 (841)
Q Consensus 100 ~~C~~~~~~Ci~~-------~~~Cdg~~~C~~g~de~~--C--~eC~~~~~~C~--~~C~----~~~g~~~C~C~~Gy~l 162 (841)
..|.+. +.|++. ++.| .|..||.... | ++|.. .+|. ..|. ++.++|+|.|++||.+
T Consensus 54 ~~C~~~-~~C~~~~~~~~~g~y~C----~C~~G~~g~~~~C~~d~C~~--~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g 126 (186)
T 1z1y_A 54 XACGEF-GQCIENPDPAQVNMYXC----GCIEGYTLXEDTCVLDVCQY--XNCGESGECIVEYLSEIQSAGCSCAIGXVP 126 (186)
T ss_dssp SEEETT-EEEEECSSTTSSCSEEE----EECTTEEEETTEEEEGGGTT--CCCCTTEEEEEEEETTEEEEEEEECTEEEE
T ss_pred CCCCCC-CEeecCCCCcCCCCEEC----CCCCCCccCCCCCCCCcCcC--CCCCCCCEEeeCCcCCCCCceEECCCCCcc
Confidence 467766 788764 4679 8999997653 5 77864 3575 3677 8999999999999997
Q ss_pred cC-CCCccccc--cccCCCCCc---cCceeecCCCCceEEeecCCeeecCCCCceE
Q psy14257 163 QP-DLITCSYL--HPCEAWGTC---SQDCEPSVSNNSYKCTCHAGYELEPDMFTCK 212 (841)
Q Consensus 163 ~~-d~~~C~~~--~eC~~~~~C---s~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~ 212 (841)
.+ +++.|+++ ++|.. +| ...|+++ .++|+|.|++||.+........
T Consensus 127 ~~~~~~~C~~~~~~~C~~--~C~~~~~~C~n~--~g~y~C~C~~G~~g~~~~~~~~ 178 (186)
T 1z1y_A 127 NPEDEXXCTXTGETACQL--XCNTDNEVCXNV--EGVYXCQCMEGFTFDXEXNVCL 178 (186)
T ss_dssp ETTTTTEEEEEECCCCCC--CCCTTTEEEEEE--TTEEEEEECTTCEEETTTTEEE
T ss_pred cCCCCCcceEcCCCcccc--cccccCcceecC--CCCeeeECCCCCccCcccccCC
Confidence 65 78999976 78963 78 3489999 9999999999999887665543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.8e-06 Score=82.17 Aligned_cols=194 Identities=11% Similarity=-0.045 Sum_probs=127.8
Q ss_pred CceEEEEccCCEEEEEeCCC--CeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEE
Q psy14257 351 PSSLVIDYNQDILYWCDSHL--NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVA 428 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~--~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~ 428 (841)
=.||++|. ++||.+.... .+|.++++.......-..+. ..... ++++..+++||...+..+.+.++
T Consensus 23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fg--------eGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFG--------AGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCE--------EEEEEETTEEEEEESSSSEEEEE
T ss_pred cccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcce--------eEEEEeCCEEEEEEeeCCEEEEE
Confidence 35999985 8999997764 59999999766544333221 11111 23344569999999999999999
Q ss_pred ccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCE
Q psy14257 429 KLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTR 507 (841)
Q Consensus 429 ~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~ 507 (841)
+++. +...++-.. ..+.||+- .++.||.+| + ..+|...+...-....-+........+..++.|... +++
T Consensus 91 D~~tl~~~~ti~~~--~~Gwglt~--dg~~L~vSd-g--s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~ 161 (243)
T 3mbr_X 91 DLATLTPRARFRYP--GEGWALTS--DDSHLYMSD-G--TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGE 161 (243)
T ss_dssp ETTTTEEEEEEECS--SCCCEEEE--CSSCEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTE
T ss_pred ECCcCcEEEEEeCC--CCceEEee--CCCEEEEEC-C--CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCE
Confidence 9864 455554433 35666665 468999999 4 578999887644333333321112234556666654 799
Q ss_pred EEEEeCCCCeEEEEEcCCCeeEEEEcCC-----------CCCCcceEEEEe--cCeEEEEeCCCCeEEEEe
Q psy14257 508 IYWIDAKSDSIHTVTYDGKDHHVVLSNH-----------DSLTHPFAIALF--ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 508 LYw~d~~~~~I~~~~~dG~~~~~i~~~~-----------~~l~~P~gla~~--~~~lY~td~~~~~i~~~~ 565 (841)
||......+.|.++|+....+.-.+... ....-|-|||+. .++||+|-..=..++++.
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 9999988999999999765543333211 122467899996 489999975545666554
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-08 Score=87.37 Aligned_cols=65 Identities=25% Similarity=0.605 Sum_probs=57.1
Q ss_pred CcccCCCCcEEecCCCceecCCCCccccc---cccC-CCCCccCceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 144 DCYNTPEGFMCVCPRDMYLQPDLITCSYL---HPCE-AWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 144 ~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~---~eC~-~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
.|+++.++|+|.|++||. +..|+++ ++|. ..+.|.+.|.++ .++|+|.|++||.+..+++.|.+.
T Consensus 27 ~C~~~~~~y~C~C~~G~~----G~~C~~~~~~~~C~~~~~~C~~~C~n~--~g~y~C~C~~G~~~~~~g~~C~~~ 95 (114)
T 1aut_L 27 TCIDGIGSFSCDCRSGWE----GRFCQREVSFLNCSLDNGGCTHYCLEE--VGWRRCSCAPGYKLGDDLLQCHPA 95 (114)
T ss_dssp EECCCSSCCCEEECTTEE----STTSCEECCSSSSSSGGGGCSSEEEEC--SSSEEEECCTTEEECTTSSCEEEC
T ss_pred CCCCCCCCcEeeCCCCCc----CCCcCcCCcCCcCcCCCCCCCCEeECC--CCCEEeECCCCeeECCCCCccCcC
Confidence 789999999999999997 5568875 4686 357898999999 999999999999999999999887
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-08 Score=74.25 Aligned_cols=37 Identities=54% Similarity=1.255 Sum_probs=33.8
Q ss_pred CCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
..|.+.+|+|. +++|||..|+|||..||. |+|||..|
T Consensus 3 ~~C~~~~F~C~-~g~CI~~~~~CDg~~DC~--DgSDE~~~ 39 (44)
T 1j8e_A 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDCG--DYSDETHA 39 (44)
T ss_dssp SSSCTTEEECT-TSCEEEGGGTTSSSCCSS--SSGGGSHH
T ss_pred CCCCCCceEeC-CCCeEecCcccCCCCCCC--CCCCCCCc
Confidence 46889999998 889999999999999999 99999764
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-08 Score=76.91 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=44.7
Q ss_pred ccccCCCCCCCcccCC-CCcEEecCCCceecCCCCccccccccCCCCCccCceeec
Q psy14257 134 KQCLRSDCHHDCYNTP-EGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPS 188 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~-g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~ 188 (841)
|...++.|+|.|.|++ |+|.|.|++||.|.+|+++|.++++ .+|.+.|.|.
T Consensus 2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~----~pC~~~c~n~ 53 (59)
T 2wph_E 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP----FPCGRVSVSQ 53 (59)
T ss_dssp TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESSS----SCTTCCCSCC
T ss_pred CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC----CCCCCccccc
Confidence 5556789999999999 6999999999999999999999754 5788999876
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=99.19 Aligned_cols=271 Identities=12% Similarity=0.035 Sum_probs=160.3
Q ss_pred eeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEe--eecCceeEEEeeecCCCC----------CCCCCCEE
Q psy14257 264 MVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVD--WIGKNLYMFWAFWSLSPS----------NSSDGGIE 331 (841)
Q Consensus 264 ~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD--~~~~~~y~~~td~~~~~~----------~~~~~~I~ 331 (841)
.||+.|..+++|.|++++... ..+.+-......|+|+++. |.+ .|+|.+.-...|- +...+.+.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~g~~phg~~~~~~p~~--~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMK--CDAILEIPNAKGIHGLRPQKWPRS--NYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEEEECSSCCSEEEEEECCSSBC--SEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCce--EeeEEeCCCCCCCcceeeeecCCC--cEEEEecccccccCCCCcccccccccCceEE
Confidence 499999999999999987543 1222222233579999984 544 6676664221110 11233566
Q ss_pred EEccCCCccccccccCc-CCCceEEEEccCCEEEEEeCCC--------------CeEEEEEe--------cCCccEEEEe
Q psy14257 332 KAGMHGENRSPLVTKNI-QWPSSLVIDYNQDILYWCDSHL--------------NTVESVRV--------DGSERTVSFN 388 (841)
Q Consensus 332 ~~~~dG~~~~~l~~~~~-~~P~glavD~~~~~lYwaD~~~--------------~~I~~~~l--------dG~~~~~~~~ 388 (841)
.++.+.. +++..-.+ +.|.+++++++++++|++..+. ..|..++. +|+... +-.
T Consensus 179 vID~~t~--~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~-i~~ 255 (595)
T 1fwx_A 179 AVDADKW--EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE-LNG 255 (595)
T ss_dssp EEETTTT--EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE-ETT
T ss_pred EEECCCC--eEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE-ECc
Confidence 6666532 22221111 3899999999999999999876 33444442 332211 111
Q ss_pred eeeecCCC----c--cccC---CCCCCccccccceEEEEecCCCcEEEEccCCce------------EEEEecCCCCCce
Q psy14257 389 LEVLGSDS----R--VGIP---NCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF------------RRTLIAGDMESPR 447 (841)
Q Consensus 389 ~~~~~~~~----~--~~i~---~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~------------~~~l~~~~l~~P~ 447 (841)
+.++.... . .-++ ....++++..++.+|+++...++|.+++++... ...-+..+ ..|+
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~ 334 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGPL 334 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SCEE
T ss_pred EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CCcc
Confidence 11111110 0 0011 122345667789999999999999999988431 11112222 4799
Q ss_pred eEEEcCCCCeEEEEecCCCCCeEEEecCCC-------CC-cEEEEEeccc--CCCCCCceeEEEeccCCEEEEEeCCC-C
Q psy14257 448 AIALDPRFGLLFWTDWDSKAPRIERCSMSG-------EH-RSVIVRVDLL--TSRGAWPNGLTLDYQLTRIYWIDAKS-D 516 (841)
Q Consensus 448 giavd~~~g~Ly~td~~~~~~~I~r~~ldG-------~~-~~~i~~~~~~--~~~~~~P~glalD~~~~~LYw~d~~~-~ 516 (841)
.++++++. ++|.+.+- .++|.+.+++. .. ..++-..... +.....+.|+++.++++.||.++... +
T Consensus 335 h~aF~~dG-~aY~t~~l--dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 335 HTAFDGRG-NAYTSLFL--DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp EEEECTTS-EEEEEETT--TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred eEEECCCC-eEEEEEec--CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 99999975 99999987 68888888764 11 3333332110 00122336778888999999999766 6
Q ss_pred eE-----------EEEEcCCCeeEEEEcCCCCCCcceEEEE
Q psy14257 517 SI-----------HTVTYDGKDHHVVLSNHDSLTHPFAIAL 546 (841)
Q Consensus 517 ~I-----------~~~~~dG~~~~~i~~~~~~l~~P~gla~ 546 (841)
++ +.++..|...+.+.... ....|..+.+
T Consensus 412 r~~~~gp~~~~~~ql~dis~~~m~lv~d~p-~~~ePh~~~i 451 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGDKMVLVHDGP-TFAEPHDAIA 451 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSSSCEEEEEEE-ESSCCCCEEE
T ss_pred ccccCCCCCCCcceEEEcCCCcEEEEEEEc-CCCCCCceEE
Confidence 66 77777766555554332 2445554444
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-08 Score=97.74 Aligned_cols=75 Identities=27% Similarity=0.626 Sum_probs=36.4
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCcccc-c-cccCC-CCCccCceeecCCCCceEEeecCCeeecC
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSY-L-HPCEA-WGTCSQDCEPSVSNNSYKCTCHAGYELEP 206 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~-~-~eC~~-~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~ 206 (841)
++|. ..+|.+ .|.++.++|.|.|++||. |+.|.+ + ++|.. .+.|.+.|.++ .++|.|.|++||.+..
T Consensus 43 deC~--~~pC~ngg~C~n~~g~y~C~C~~Gf~----G~~Ce~~i~deC~~~~~~C~~~C~n~--~gsy~C~C~~Gy~l~~ 114 (195)
T 1nfu_B 43 DQCE--TSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKLCSLDNGDCDQFCHEE--QNSVVCSCARGYTLAD 114 (195)
T ss_dssp --------------------------------------------CCGGGTGGGGCSSEEEEE--TTEEEEECCTTEEECT
T ss_pred cccC--CCCCCCCCEeECCCCCeeEeCCCCce----eccccccccccccCCCCCCCCEeECC--CCCeEEECCCCceeCC
Confidence 5676 346865 899999999999999997 778987 5 89974 46899999999 9999999999999999
Q ss_pred CCCceEeC
Q psy14257 207 DMFTCKSK 214 (841)
Q Consensus 207 d~~~C~~~ 214 (841)
++..|.++
T Consensus 115 dG~~C~~~ 122 (195)
T 1nfu_B 115 NGKACIPT 122 (195)
T ss_dssp TSSCEEES
T ss_pred CCCccccC
Confidence 99999987
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00089 Score=83.75 Aligned_cols=416 Identities=10% Similarity=0.014 Sum_probs=219.2
Q ss_pred CeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCc----
Q psy14257 273 DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNI---- 348 (841)
Q Consensus 273 ~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~---- 348 (841)
+.|+..+++++. ...+ ...-.....+++.|.++.+.+ +.... .......|+.++++|...+.+.....
T Consensus 33 ~~l~~~~~~gg~---~~~l-t~~~~~v~~~~~SPDG~~la~--~s~~~--~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~ 104 (1045)
T 1k32_A 33 DDLWEHDLKSGS---TRKI-VSNLGVINNARFFPDGRKIAI--RVMRG--SSLNTADLYFYNGENGEIKRITYFSGKSTG 104 (1045)
T ss_dssp TEEEEEETTTCC---EEEE-ECSSSEEEEEEECTTSSEEEE--EEEES--TTCCEEEEEEEETTTTEEEECCCCCEEEET
T ss_pred CcEEEEECCCCc---EEEe-eeCCCcccCeEECCCCCEEEE--EEeec--cCCCCCeEEEEECCCCCeEEcccCCCcccc
Confidence 456666665543 1222 222223455666665543332 21110 00122368888887765554432111
Q ss_pred --CCCceEEEEccCCEEEEEeC-----CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEe--
Q psy14257 349 --QWPSSLVIDYNQDILYWCDS-----HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVE-- 419 (841)
Q Consensus 349 --~~P~glavD~~~~~lYwaD~-----~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD-- 419 (841)
....++++.++++.+|.++. ....|+.++++|+..+.+..... ..+.|..+.||...
T Consensus 105 ~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--------------~~~~~spG~l~~~~~~ 170 (1045)
T 1k32_A 105 RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA--------------THILFADGRRVIGRNT 170 (1045)
T ss_dssp TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC--------------SEEEEETTEEEEEESC
T ss_pred cccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCc--------------ceeeeCCCEEEEeccC
Confidence 11267889888885555543 23579999998876554322110 00011112222210
Q ss_pred -----------cCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 420 -----------SNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 420 -----------~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
....+|+.....|. .+.+ ...-.....+++++. .+|++.......+|++.+++|...+.+..
T Consensus 171 ~~~~~~~~~~g~~~~~lw~~~~~~~-~~~l-~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~--- 243 (1045)
T 1k32_A 171 FELPHWKGYRGGTRGKIWIEVNSGA-FKKI-VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTS--- 243 (1045)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTE-EEEE-ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCC---
T ss_pred CCccccccccCCCcCCEEEECCCCC-eEEC-cCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecC---
Confidence 11234444333332 3333 333455677888765 55555432236789999998877665543
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC--------CCCcceEEEEe-c--CeEEEEeCC
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD--------SLTHPFAIALF-E--NHVYWTDWR 557 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~--------~l~~P~gla~~-~--~~lY~td~~ 557 (841)
......+++.+.+++|.++. .+.|+..++.+.....+..... ....+..+++. . .+|.++.
T Consensus 244 ----~~~~~~~~~SpDG~~la~~~--~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-- 315 (1045)
T 1k32_A 244 ----FTDYYPRHLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-- 315 (1045)
T ss_dssp ----CCSSCEEEEEESSSCEEEEE--TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--
T ss_pred ----CCCcceeeEcCCCCEEEEEe--CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--
Confidence 11234567877777777764 5688888886554442221100 00123455554 2 3455544
Q ss_pred CCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCce
Q psy14257 558 TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQ 637 (841)
Q Consensus 558 ~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~ 637 (841)
.+.|+.++..++.... +... ....... .... |+ ..
T Consensus 316 ~~~i~~~~~~~~~~~~-~~~~-------------------------------~~~~~~~-----~~~s-dg-------~~ 350 (1045)
T 1k32_A 316 RGQAFIQDVSGTYVLK-VPEP-------------------------------LRIRYVR-----RGGD-TK-------VA 350 (1045)
T ss_dssp TTEEEEECTTSSBEEE-CSCC-------------------------------SCEEEEE-----ECSS-SE-------EE
T ss_pred cCEEEEEcCCCCceEE-ccCC-------------------------------CcceEEe-----eeEc-CC-------Ce
Confidence 3455555544333111 1000 0000000 0000 11 11
Q ss_pred eEEeecCCeEE-EEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecc
Q psy14257 638 FIIFSRPREIR-GVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLT 716 (841)
Q Consensus 638 ~l~~~~~~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 716 (841)
+++.+....++ .++++..... .+. .....+..++|.|..+.|+++. ..+.|+.+++.+..
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~---~l~-~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg~-------------- 411 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE---KFE-ENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGK-------------- 411 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE---ECC-CCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC--------------
T ss_pred EEEEECCCceEEEEECCCCCce---Eec-CCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCCc--------------
Confidence 22222334555 5555443211 111 2234578899999999999887 45789999987655
Q ss_pred cccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCC-------CCCeEEEEecCCcceEEEEcCCCCCCCcCC
Q psy14257 717 PLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP-------TQSKIVVCNLEGEYQTTILSNESNDTSTLS 789 (841)
Q Consensus 717 ~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~-------~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~ 789 (841)
...++......+.++++.+.++.|.++..+. ....|.+.++++.....+... ..
T Consensus 412 ------------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~-------~~ 472 (1045)
T 1k32_A 412 ------------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE-------NS 472 (1045)
T ss_dssp ------------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS-------SS
T ss_pred ------------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC-------Cc
Confidence 3444444555668999999999998884321 235899999987654444333 45
Q ss_pred CceEEEEeCCCCeEEEEec
Q psy14257 790 KISSIAVWPVKGKMFWSNV 808 (841)
Q Consensus 790 ~p~~iavd~~~g~lyw~d~ 808 (841)
.+..++..|...+|||...
T Consensus 473 ~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 473 HDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp BEEEEEECTTSCEEEEEES
T ss_pred ccCCceEcCCCCEEEEEec
Confidence 6788999999889999875
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-08 Score=74.60 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=38.5
Q ss_pred ccccCCCCCCCcccCCCCcEEecCCCceecCCCCcccccccc
Q psy14257 134 KQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
|...++.|+|.|.|++|+|+|.|++||.|.+|+++|.+++||
T Consensus 1 C~~~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~ 42 (51)
T 1kig_L 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred CCCCCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCcc
Confidence 444577899999999999999999999999999999999987
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-08 Score=79.30 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=41.5
Q ss_pred ccccccCCCCCCCcccCCC-CcEEecCCCceecCCCCccccccccC
Q psy14257 132 DEKQCLRSDCHHDCYNTPE-GFMCVCPRDMYLQPDLITCSYLHPCE 176 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g-~~~C~C~~Gy~l~~d~~~C~~~~eC~ 176 (841)
+||...++.|+|.|.|++| +|.|.|++||.|.+|+++|.+++||.
T Consensus 6 ~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~ 51 (69)
T 1kli_L 6 LICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 51 (69)
T ss_dssp CCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred ccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCccccc
Confidence 5787778899999999999 89999999999999999999999983
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00018 Score=77.93 Aligned_cols=265 Identities=13% Similarity=0.075 Sum_probs=162.5
Q ss_pred CCceeEEEcCCCCeEEEEecCC---CCCeEEEecCCC------CCcEEEEEec--ccCCCCCCceeEEEeccCCEEEEEe
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDS---KAPRIERCSMSG------EHRSVIVRVD--LLTSRGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~---~~~~I~r~~ldG------~~~~~i~~~~--~~~~~~~~P~glalD~~~~~LYw~d 512 (841)
.-|.||++|..+|+||+|-..- ...++-.+..+. .....+..-. .....|..+.++.+|. .+||++.|
T Consensus 26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~-~~rLWVLD 104 (381)
T 3q6k_A 26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDD-CRRLWVVD 104 (381)
T ss_dssp CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECT-TCEEEEEE
T ss_pred cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcC-CCcEEEEe
Confidence 4699999975569999996331 123454444321 1111101100 0113577889999994 79999999
Q ss_pred CCC---------------CeEEEEEcCCC--e-eEEEEcCCCCC---CcceEEEEe---------cCeEEEEeCCCCeEE
Q psy14257 513 AKS---------------DSIHTVTYDGK--D-HHVVLSNHDSL---THPFAIALF---------ENHVYWTDWRTNSVI 562 (841)
Q Consensus 513 ~~~---------------~~I~~~~~dG~--~-~~~i~~~~~~l---~~P~gla~~---------~~~lY~td~~~~~i~ 562 (841)
.+. -+|..+|+... . .+++.-....+ ..--.|+++ ++++|+||.....|+
T Consensus 105 tG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLI 184 (381)
T 3q6k_A 105 IGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALF 184 (381)
T ss_dssp CSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEE
T ss_pred CCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEE
Confidence 762 27889999865 3 33332211111 123456676 578999999999999
Q ss_pred EEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee
Q psy14257 563 RANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS 642 (841)
Q Consensus 563 ~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~ 642 (841)
.++..+|+...+....+. + | ..+.+..
T Consensus 185 Vydl~~~~swRv~~~~~~-----------------------------p----------------d--------~~~~~~i 211 (381)
T 3q6k_A 185 IYDHKKQDSWNVTHPTFK-----------------------------A----------------E--------RPTKFDY 211 (381)
T ss_dssp EEETTTTEEEEEECGGGS-----------------------------C----------------C--------SCEEEEE
T ss_pred EEECCCCcEEEEccCCCc-----------------------------c----------------c--------cCcceEE
Confidence 999988887776532110 0 0 0000111
Q ss_pred cCCeEEEEecCCCCccccceeecCCCCCceEEEEecC----CCEEEEEECCCCeEEEEEcc---cCceeeeeeeeeeeec
Q psy14257 643 RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAA----NKKIYWTDQEYNEVKRSSIV---GGQIQLVVDAVFEFYL 715 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~----~~~iyw~d~~~~~I~~~~~~---g~~~~~~~~~~~~~~~ 715 (841)
.+... . + ...+.+|+.+|. .+.|||.-..+.+++++... ...
T Consensus 212 ~G~~~-~--~---------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~------------- 260 (381)
T 3q6k_A 212 GGKEY-E--F---------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG------------- 260 (381)
T ss_dssp TTEEE-E--E---------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT-------------
T ss_pred CCEEe-E--e---------------ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc-------------
Confidence 11100 0 0 012345666665 78999999888899998732 111
Q ss_pred ccccccccccCceEEEEeeCC-CCCcceeEEeecCCcEEEEecCCCCCeEEEEecCC-c----ceEEEEcCCCCCCCcCC
Q psy14257 716 TPLSKRSSIVGGQIQLVVDAG-ISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEG-E----YQTTILSNESNDTSTLS 789 (841)
Q Consensus 716 ~~~~~~~~~~~~~~~~i~~~~-~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g-~----~~~~~~~~~~~~~~~l~ 789 (841)
...+.+.+-..+ .....++|+|..+++||++ +...+.|...+.++ . ...+++.+ . .|.
T Consensus 261 ---------~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~--~~~~~aI~~w~~~~~~~~~~n~~~l~~d----~-~l~ 324 (381)
T 3q6k_A 261 ---------GKLNPELLGNRGKYNDAIALAYDPKTKVIFFA--EANTKQVSCWNTQKMPLRMKNTDVVYTS----S-RFV 324 (381)
T ss_dssp ---------CCCCCEEEEECCTTCCEEEEEECTTTCEEEEE--ESSSSEEEEEETTSCSBCGGGEEEEEEC----T-TCC
T ss_pred ---------hhhceEEeeecCCCCCcceEEEeCCCCeEEEE--eccCCeEEEEeCCCCccccCceEEEEEC----C-Ccc
Confidence 011123332222 2344578999778899999 56889999999998 3 45677765 1 389
Q ss_pred CceEEEEeCCCCeEEEEecCC
Q psy14257 790 KISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 790 ~p~~iavd~~~g~lyw~d~~~ 810 (841)
.|.+|+|++ .|+||++...-
T Consensus 325 ~pd~~~i~~-~g~Lwv~sn~l 344 (381)
T 3q6k_A 325 FGTDISVDS-KGGLWFMSNGF 344 (381)
T ss_dssp SEEEEEECT-TSCEEEEECSC
T ss_pred ccCeEEECC-CCeEEEEECcc
Confidence 999999996 57999987543
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-08 Score=95.96 Aligned_cols=102 Identities=20% Similarity=0.494 Sum_probs=73.2
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCC----cccc--------------cccccCCCCC--CCcccCCCC-------
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDE----MFCD--------------EKQCLRSDCH--HDCYNTPEG------- 151 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de----~~C~--------------eC~~~~~~C~--~~C~~~~g~------- 151 (841)
+|.+ +.|++. +|.| .|++||.. ..|. .|......|. ..|.++.++
T Consensus 11 pC~n--g~C~n~~g~y~C----~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~~g~~~g~~C~ 84 (147)
T 2w86_A 11 PCIN--GVCKNSPGSFIC----ECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCT 84 (147)
T ss_dssp CSBT--SEEEEETTEEEE----ECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTTTCSEETTTTE
T ss_pred CCCC--CEeECCCCCEEe----ECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCccccCCccccCcCcccCCCcc
Confidence 4665 677765 7888 89999843 2231 2221111221 134455544
Q ss_pred ---cEEecCCCceecCCCCccccccccC-CCCCccC-ceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 152 ---FMCVCPRDMYLQPDLITCSYLHPCE-AWGTCSQ-DCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 152 ---~~C~C~~Gy~l~~d~~~C~~~~eC~-~~~~Cs~-~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
|.|.|++||.+ .+++.|++++||. .++.|.+ .|+++ .++|+|.|++||.+..++++|
T Consensus 85 ~c~~~C~C~~Gy~~-~~g~~C~dideC~~~~~~C~~g~C~n~--~g~y~C~C~~Gy~g~~~~~~C 146 (147)
T 2w86_A 85 LCQVDPICGKGYSR-IKGTQCEDIDECEVFPGVCKNGLCVNT--RGSFKCQCPSGMTLDATGRIC 146 (147)
T ss_dssp ECCCCTTTCTTEEE-EETTEEEECCHHHHSTTCSSSSEEEEE--TTEEEEECCTTCCBCTTSSCB
T ss_pred cCCCcccCCCcccc-CCCCccCccccccCCCCCCCCCEEECC--CCCEEeeCCCCCccCCCCCee
Confidence 78899999986 3688999999997 4567875 89999 999999999999999888887
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=5.7e-08 Score=89.90 Aligned_cols=75 Identities=27% Similarity=0.624 Sum_probs=36.0
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCcccc-c-cccCC-CCCccCceeecCCCCceEEeecCCeeecC
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSY-L-HPCEA-WGTCSQDCEPSVSNNSYKCTCHAGYELEP 206 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~-~-~eC~~-~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~ 206 (841)
++|.. .+|.+ .|.++.++|+|.|++||. |..|.+ + ++|.. .+.|.+.|.++ .++|+|.|++||.+..
T Consensus 43 d~C~~--~pC~n~g~C~~~~~~y~C~C~~G~~----G~~C~~~i~d~C~~~~~~C~~~C~~~--~g~y~C~C~~Gy~l~~ 114 (134)
T 2vh0_B 43 DQCET--SPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKLCSLDNGDCDQFCHEE--QNSVVCSCARGYTLAD 114 (134)
T ss_dssp --------------------------------------------CCGGGTGGGGCSSEEEEE--TTEEEEECCTTEEECT
T ss_pred CcCCC--CCCCCcCCcccCCCCEEeeCCCCcc----CCccccCCCCccccCCCCCCCEeECC--CCCEEEECCCCcEECC
Confidence 56652 36764 899999999999999997 678987 5 88974 46798899999 9999999999999999
Q ss_pred CCCceEeC
Q psy14257 207 DMFTCKSK 214 (841)
Q Consensus 207 d~~~C~~~ 214 (841)
+++.|.++
T Consensus 115 ~g~~C~~~ 122 (134)
T 2vh0_B 115 NGKACIPT 122 (134)
T ss_dssp TSSCEEES
T ss_pred CCCccCcC
Confidence 99999887
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.5e-08 Score=74.15 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=38.7
Q ss_pred ccccCCCCCCCcccCCC-CcEEecCCCceecCCCCcccccccc
Q psy14257 134 KQCLRSDCHHDCYNTPE-GFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~g-~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
|...++.|+|.|.|+++ +|+|.|++||.|.+|+++|.+++||
T Consensus 2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec 44 (53)
T 2bz6_L 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCccc
Confidence 55567889999999999 7999999999999999999999998
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.0014 Score=81.92 Aligned_cols=313 Identities=13% Similarity=0.048 Sum_probs=166.6
Q ss_pred eEEeccCccccccccccccEEEEeccccceeeecccccCCcceeEEEec-----CCCeEEEEEecCCcccceEEEEeCCC
Q psy14257 222 FVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDV-----IDDKIYNATLIGNSLSNIDVVVQTGL 296 (841)
Q Consensus 222 ~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~-----~~~~I~~~~~~~~~~~~~~~~~~~~l 296 (841)
.+.|+....|+..++++.....+......+..+.|.++... |.++.. ....|+..++.++. ... +...-
T Consensus 26 ~iaf~~~~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~--la~~s~~~~~~~~~~i~~~d~~~g~---~~~-lt~~~ 99 (1045)
T 1k32_A 26 RIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRK--IAIRVMRGSSLNTADLYFYNGENGE---IKR-ITYFS 99 (1045)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSE--EEEEEEESTTCCEEEEEEEETTTTE---EEE-CCCCC
T ss_pred EEEEEECCcEEEEECCCCcEEEeeeCCCcccCeEECCCCCE--EEEEEeeccCCCCCeEEEEECCCCC---eEE-cccCC
Confidence 56676667888888888777766654455677778775444 776632 33478888777653 111 11111
Q ss_pred CCc-------cceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCc---------------------
Q psy14257 297 STA-------EGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNI--------------------- 348 (841)
Q Consensus 297 ~~p-------~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~--------------------- 348 (841)
... .++++.+.++ .+|.+.... ......+|++++++|...+.+.....
T Consensus 100 ~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~--~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~ 175 (1045)
T 1k32_A 100 GKSTGRRMFTDVAGFDPDGN--LIISTDAMQ--PFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPH 175 (1045)
T ss_dssp EEEETTEECSEEEEECTTCC--EEEEECTTS--SSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTT
T ss_pred CcccccccccccccCCCCCE--EEEEECCcC--CCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccc
Confidence 111 4566666553 333332211 01123468887776655443322110
Q ss_pred ----------------------------CCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCcc
Q psy14257 349 ----------------------------QWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRV 398 (841)
Q Consensus 349 ----------------------------~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~ 398 (841)
.....+++. .++||++... ...|+.++++|...+.+......
T Consensus 176 ~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s--~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~------ 247 (1045)
T 1k32_A 176 WKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV--GHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDY------ 247 (1045)
T ss_dssp STTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE--TTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSS------
T ss_pred cccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe--CCEEEEEEeccCceEEEEEeCCCCcceEecCCCCc------
Confidence 001111222 2355544332 33566666666555443211100
Q ss_pred ccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCC----------CCCceeEEEc-CCCCeEEEEecCCCC
Q psy14257 399 GIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGD----------MESPRAIALD-PRFGLLFWTDWDSKA 467 (841)
Q Consensus 399 ~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~----------l~~P~giavd-~~~g~Ly~td~~~~~ 467 (841)
...++...+..|.++. .+.|++.++.+.....+.... ...+..++++ |...+|.++. .
T Consensus 248 -----~~~~~SpDG~~la~~~--~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~ 316 (1045)
T 1k32_A 248 -----YPRHLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----R 316 (1045)
T ss_dssp -----CEEEEEESSSCEEEEE--TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----T
T ss_pred -----ceeeEcCCCCEEEEEe--CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE----c
Confidence 0001222234455542 467777777555443222110 1146789999 9877787776 3
Q ss_pred CeEEEecCCCCCcEEEEEecccCCCCC-CceeEEEeccCCEEEEEeCCCCeEE-EEEcCCCeeEEEEcCCCCCCcceEEE
Q psy14257 468 PRIERCSMSGEHRSVIVRVDLLTSRGA-WPNGLTLDYQLTRIYWIDAKSDSIH-TVTYDGKDHHVVLSNHDSLTHPFAIA 545 (841)
Q Consensus 468 ~~I~r~~ldG~~~~~i~~~~~~~~~~~-~P~glalD~~~~~LYw~d~~~~~I~-~~~~dG~~~~~i~~~~~~l~~P~gla 545 (841)
..|+..++++.....+.. .-. .+..+++. .+++|+++.. ...|+ .+++++.....+. .. ...+..++
T Consensus 317 ~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~-~~--~~~~~~~~ 385 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPE------PLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFE-EN--LGNVFAMG 385 (1045)
T ss_dssp TEEEEECTTSSBEEECSC------CSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECC-CC--CCSEEEEE
T ss_pred CEEEEEcCCCCceEEccC------CCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEec-CC--ccceeeeE
Confidence 578888887654333211 112 34556666 5667777665 56888 8888887665554 22 23456777
Q ss_pred Ee--cCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 546 LF--ENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 546 ~~--~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
+. +.+|+++. ..+.|+.++..+|+...++
T Consensus 386 ~SpDG~~la~~~-~~~~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 386 VDRNGKFAVVAN-DRFEIMTVDLETGKPTVIE 416 (1045)
T ss_dssp ECTTSSEEEEEE-TTSEEEEEETTTCCEEEEE
T ss_pred ECCCCCEEEEEC-CCCeEEEEECCCCceEEec
Confidence 73 34566554 3467888887776654443
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-07 Score=87.86 Aligned_cols=76 Identities=25% Similarity=0.596 Sum_probs=63.6
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCcccc-cccc---C-CCCCccCceeecCCCC-ceEEeecCCee
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSY-LHPC---E-AWGTCSQDCEPSVSNN-SYKCTCHAGYE 203 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~eC---~-~~~~Cs~~C~~~~~~g-~~~C~C~~G~~ 203 (841)
++|. ..+|.+ .|.++.++|+|.|++||. |+.|++ +++| . ..+.|.+.|.++ .+ +|+|.|++||.
T Consensus 48 d~C~--~~pC~n~g~C~~~~g~y~C~C~~G~~----G~~C~~~~~~c~~c~~~~~~C~~~C~~~--~g~~y~C~C~~Gy~ 119 (142)
T 2c4f_L 48 DQCA--SSPCQNGGSCKDQLQSYICFCLPAFE----GRNCETHKDDQLICVNENGGCEQYCSDH--TGTKRSCRCHEGYS 119 (142)
T ss_dssp CGGG--GCCCCTTCEEEEETTEEEEECCTTEE----STTSCEEGGGCCSTTTGGGGCSSEEECC--TTSCCEEECCTTEE
T ss_pred CcCc--CCCcCCCCEEeCCCCCEEeeCCCCcc----CCccccCccccccccCCCCCccCEeECC--CCCCEEEECCCCce
Confidence 5676 347865 899999999999999996 778986 5664 2 346788899999 88 99999999999
Q ss_pred ecCCCCceEeCC
Q psy14257 204 LEPDMFTCKSKS 215 (841)
Q Consensus 204 l~~d~~~C~~~~ 215 (841)
+..++++|.++.
T Consensus 120 l~~dG~~C~~~~ 131 (142)
T 2c4f_L 120 LLADGVSCTPTV 131 (142)
T ss_dssp ECTTSSCEEESS
T ss_pred ECCCCCCCCCCC
Confidence 999999999873
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-05 Score=87.72 Aligned_cols=217 Identities=11% Similarity=0.021 Sum_probs=127.7
Q ss_pred CCCEEEEccCCCcccc----cc-------ccCcCCCceEEEEccCCEEEEEeCCC------CeEEEEEecCCccEEEEee
Q psy14257 327 DGGIEKAGMHGENRSP----LV-------TKNIQWPSSLVIDYNQDILYWCDSHL------NTVESVRVDGSERTVSFNL 389 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~----l~-------~~~~~~P~glavD~~~~~lYwaD~~~------~~I~~~~ldG~~~~~~~~~ 389 (841)
+++|+.++.....+++ .+ ..+..+|.++..-+++ ||++.... +.|..++....+.......
T Consensus 105 s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~ 182 (462)
T 2ece_A 105 SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI 182 (462)
T ss_dssp TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS
T ss_pred CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc
Confidence 4577777764332221 11 1144578888888766 88876544 5677766664443322211
Q ss_pred eeecCCCccccCCCCCCcc--ccccceEEEEec------------------CCCcEEEEccCCce-EEEEecC-CCCCce
Q psy14257 390 EVLGSDSRVGIPNCRPEDN--LWIGKNLYWVES------------------NLDQIEVAKLSGQF-RRTLIAG-DMESPR 447 (841)
Q Consensus 390 ~~~~~~~~~~i~~~~~~av--dw~~~~LY~tD~------------------~~~~I~v~~~~G~~-~~~l~~~-~l~~P~ 447 (841)
. ..+..++. ++ ....+.+|.+++ ..++|.+++++... ..++-.. .-..|+
T Consensus 183 ~--~~~~~~~Y------d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 183 D--RGDQYLAY------DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL 254 (462)
T ss_dssp B--CTTCCCCC------CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred C--CCCccccc------eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence 1 11111110 11 112356777763 36899999997543 3333221 114688
Q ss_pred eEEE--cCCCCeEEEEec-----CCCCCeEEEecCCCCCcEE--EEEeccc--CCC-----------CCCceeEEEeccC
Q psy14257 448 AIAL--DPRFGLLFWTDW-----DSKAPRIERCSMSGEHRSV--IVRVDLL--TSR-----------GAWPNGLTLDYQL 505 (841)
Q Consensus 448 giav--d~~~g~Ly~td~-----~~~~~~I~r~~ldG~~~~~--i~~~~~~--~~~-----------~~~P~glalD~~~ 505 (841)
.|++ +|...++|++.. . .+.|++...++..... +++.... ... -..|.+|.|.+++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~L--ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDL--SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTC--CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred eeEeeECCCCCEEEEEEeeeccCC--CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 8877 999999999986 5 5788877776522111 1111100 000 2468999999999
Q ss_pred CEEEEEeCCCCeEEEEEcC-CCeeE---EEEcCCC-----------CCCcceEEEEe--cCeEEEEe
Q psy14257 506 TRIYWIDAKSDSIHTVTYD-GKDHH---VVLSNHD-----------SLTHPFAIALF--ENHVYWTD 555 (841)
Q Consensus 506 ~~LYw~d~~~~~I~~~~~d-G~~~~---~i~~~~~-----------~l~~P~gla~~--~~~lY~td 555 (841)
++||+++...+.|..++.+ ....+ .+..++. ....|.++++. +.+||+++
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999999999999999985 32222 2222210 01259999984 67999998
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.39 E-value=0.0081 Score=69.45 Aligned_cols=498 Identities=9% Similarity=-0.056 Sum_probs=233.5
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCccc-ceEEEEeCCCCC-ccceEEee--ecCceeEEEeeecCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLS-NIDVVVQTGLST-AEGLAVDW--IGKNLYMFWAFWSLSPSNS 325 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~-~~~~~~~~~l~~-p~giavD~--~~~~~y~~~td~~~~~~~~ 325 (841)
.+.+++|...... |.... .+.|...++..+.-. .....+...-.. ...+++.+ .++ +++-. .
T Consensus 20 ~v~~~~~spdg~~--l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~--~l~s~--------~ 85 (615)
T 1pgu_A 20 FTTHLSYDPTTNA--IAYPC--GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ--YLCSG--------D 85 (615)
T ss_dssp CCCCCEEETTTTE--EEEEE--TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC--EEEEE--------E
T ss_pred ceeEEEECCCCCE--EEEec--CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC--EEEEe--------c
Confidence 3556777665433 55544 567777777654100 112223322334 56677776 442 22211 2
Q ss_pred CCCCEEEEccC-CC-------ccccccccCcCCCceEEEEccCCEEEEEeCCC---CeEEEEEecCCccEEEEeeeeecC
Q psy14257 326 SDGGIEKAGMH-GE-------NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL---NTVESVRVDGSERTVSFNLEVLGS 394 (841)
Q Consensus 326 ~~~~I~~~~~d-G~-------~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~---~~I~~~~ldG~~~~~~~~~~~~~~ 394 (841)
.++.|..+++. |. .........-.....+++.++++.|+.+.... +.|+..+ .+.....+. ..
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~-----~~ 159 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVS-----GH 159 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECC-----SC
T ss_pred CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeee-----cC
Confidence 35677777774 31 11111222344567899999888888877543 3454444 222111110 00
Q ss_pred CCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCC---CceeEEEcCC-CCeEEEEecCCCCCeE
Q psy14257 395 DSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDME---SPRAIALDPR-FGLLFWTDWDSKAPRI 470 (841)
Q Consensus 395 ~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~---~P~giavd~~-~g~Ly~td~~~~~~~I 470 (841)
...+ ..+++...+..++++-...+.|.+.++........+..... ....++++|. ..+|+.... .+.|
T Consensus 160 ~~~v-----~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i 231 (615)
T 1pgu_A 160 SQRI-----NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS---DRKI 231 (615)
T ss_dssp SSCE-----EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---TCCE
T ss_pred CccE-----EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---CCeE
Confidence 0000 00011112233666666778899988876544433433334 5789999998 555655543 4677
Q ss_pred EEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee-EEEEcCCCCC-CcceEEEEec
Q psy14257 471 ERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH-HVVLSNHDSL-THPFAIALFE 548 (841)
Q Consensus 471 ~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~-~~i~~~~~~l-~~P~gla~~~ 548 (841)
...++........+.. .....-.....+++. .+..|+ +-...+.|...++..... ..+....... .....+....
T Consensus 232 ~vwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (615)
T 1pgu_A 232 SCFDGKSGEFLKYIED-DQEPVQGGIFALSWL-DSQKFA-TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 308 (615)
T ss_dssp EEEETTTCCEEEECCB-TTBCCCSCEEEEEES-SSSEEE-EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE
T ss_pred EEEECCCCCEeEEecc-cccccCCceEEEEEc-CCCEEE-EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCC
Confidence 7777653332222100 000122345678887 445555 444567899999875433 3333221111 2234555534
Q ss_pred CeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCccc-----------CC-C--CCCCCCCccccccCCCCce
Q psy14257 549 NHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKK-----------SP-C--EMNNGNCSHLCLIGMNGTY 614 (841)
Q Consensus 549 ~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~-----------n~-C--~~~ng~Cs~lC~~~~~~~~ 614 (841)
+...++-...+.|...+..+++....+.........+.. |... +. + ....+.-..+.+ .+....
T Consensus 309 ~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l 386 (615)
T 1pgu_A 309 NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEY 386 (615)
T ss_dssp TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCC
T ss_pred CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEE
Confidence 444444445667776665544433333211111111101 1100 00 0 000000011111 000000
Q ss_pred eeeCCCCceeecCCC--------cc--cccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEE
Q psy14257 615 KCQCPHVMKLMSDNK--------TC--QVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIY 684 (841)
Q Consensus 615 ~C~Cp~g~~l~~d~~--------tC--~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iy 684 (841)
.....++....-+-. .+ ..+...+++.+..+.+....+.... .+..+ .....+.+++|. .+.|+
T Consensus 387 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~--~~~l~ 460 (615)
T 1pgu_A 387 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD--IIKSV--RLNSPGSAVSLS--QNYVA 460 (615)
T ss_dssp EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC--EEEEE--ECSSCEEEEEEC--SSEEE
T ss_pred EEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc--eeeec--ccCCCceEEEEc--CCEEE
Confidence 011111111000000 00 0011223333344455555442221 11111 122456777777 56666
Q ss_pred EEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEE-EEeeCCCCCcceeEEeecCCcEEEEecCCCCCe
Q psy14257 685 WTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQ-LVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSK 763 (841)
Q Consensus 685 w~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~ 763 (841)
......+.|+..++.+.. .. ..+......+..|++.+.++.|.... ..+.
T Consensus 461 ~~~~~d~~i~~~~~~~~~--------------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg~ 511 (615)
T 1pgu_A 461 VGLEEGNTIQVFKLSDLE--------------------------VSFDLKTPLRAKPSYISISPSETYIAAGD---VMGK 511 (615)
T ss_dssp EEETTTSCEEEEETTEEE--------------------------EEEECSSCCSSCEEEEEECTTSSEEEEEE---TTSC
T ss_pred EeecCCCeEEEEECCCcc--------------------------ccccccCCccCceEEEEECCCCCEEEEcC---CCCe
Confidence 555326778887776543 11 12223456788899988887777663 4688
Q ss_pred EEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeC----------CCCeEEEEecCCCcceEEEEecCCC
Q psy14257 764 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWP----------VKGKMFWSNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 764 I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~----------~~g~lyw~d~~~~~~~I~~~~~dG~ 823 (841)
|.+.++........+.+. ......+|++.| ...+|.-..... +|...+++..
T Consensus 512 i~iw~~~~~~~~~~~~~~-----h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~ 573 (615)
T 1pgu_A 512 ILLYDLQSREVKTSRWAF-----RTSKINAISWKPAEKGANEEEIEEDLVATGSLDT---NIFIYSVKRP 573 (615)
T ss_dssp EEEEETTTTEEEECCSCC-----CSSCEEEEEECCCC------CCSCCEEEEEETTS---CEEEEESSCT
T ss_pred EEEeeCCCCcceeEeecC-----CCCceeEEEEcCccccccccccCCCEEEEEcCCC---cEEEEECCCC
Confidence 999999654332222210 046789999999 555555544332 4666666554
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-07 Score=87.83 Aligned_cols=70 Identities=21% Similarity=0.486 Sum_probs=61.8
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc---ccccccCCCCCCCc-ccCCCCcEEecCCCceecCCCCccccccc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC---DEKQCLRSDCHHDC-YNTPEGFMCVCPRDMYLQPDLITCSYLHP 174 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C---~eC~~~~~~C~~~C-~~~~g~~~C~C~~Gy~l~~d~~~C~~~~e 174 (841)
+|.++ +.|++. ++.| .|+.||.+..| ++|...++.|.+.| .++.++|+|.|++||.+.++++.|.++++
T Consensus 55 pC~n~-g~C~~~~~~y~C----~C~~G~~G~~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~~~ 129 (146)
T 1x7a_L 55 PCLNG-GLCKDDINSYEC----WCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVP 129 (146)
T ss_dssp SSCTT-CEEEECSSCEEE----ECCSSEESTTTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEECSS
T ss_pred CCCCC-CEeECCCCCEEE----ecCCCCcCCcCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCCCC
Confidence 57776 889876 7889 99999988889 78987677899999 99999999999999999999999998876
Q ss_pred c
Q psy14257 175 C 175 (841)
Q Consensus 175 C 175 (841)
+
T Consensus 130 ~ 130 (146)
T 1x7a_L 130 F 130 (146)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-07 Score=83.35 Aligned_cols=69 Identities=26% Similarity=0.504 Sum_probs=57.6
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc------ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC------DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYL 172 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C------~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~ 172 (841)
.|.++ +.|++. +|.| .|+.||.+..| ++|...++.|++.|.++.++|+|.|++||.+..+++.|++.
T Consensus 21 ~C~~~-g~C~~~~~~y~C----~C~~G~~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~ 95 (114)
T 1aut_L 21 LCCGH-GTCIDGIGSFSC----DCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 95 (114)
T ss_dssp TTTTS-EEECCCSSCCCE----EECTTEESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEEC
T ss_pred cCCCc-CCCCCCCCCcEe----eCCCCCcCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcC
Confidence 35555 778765 7889 89999987778 26876677899999999999999999999999999999876
Q ss_pred cc
Q psy14257 173 HP 174 (841)
Q Consensus 173 ~e 174 (841)
.+
T Consensus 96 ~~ 97 (114)
T 1aut_L 96 VK 97 (114)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-07 Score=93.43 Aligned_cols=102 Identities=25% Similarity=0.593 Sum_probs=78.3
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCc---cc---cccccc--CCCCCC--CcccCC-----CCcEEecCCCceec
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEM---FC---DEKQCL--RSDCHH--DCYNTP-----EGFMCVCPRDMYLQ 163 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~---~C---~eC~~~--~~~C~~--~C~~~~-----g~~~C~C~~Gy~l~ 163 (841)
+|.+ +.|++. ++.| .|.+||... .| ++|... ..+|.+ .|.++. ++|+|.|++||.+.
T Consensus 12 pC~n--g~C~~~~g~~~C----~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~ 85 (186)
T 1z1y_A 12 ICXN--GQLVQMSNHFXC----MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLX 85 (186)
T ss_dssp CCBT--EEEEECSSCEEE----EECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEE
T ss_pred CCCC--CEeECCCCCeEe----ECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccC
Confidence 6776 788875 7889 899999543 68 788743 457864 899999 89999999999864
Q ss_pred CCCCccccccccCCCCCcc--Ccee----ecCCCCceEEeecCCeeecC-CCCceEeC
Q psy14257 164 PDLITCSYLHPCEAWGTCS--QDCE----PSVSNNSYKCTCHAGYELEP-DMFTCKSK 214 (841)
Q Consensus 164 ~d~~~C~~~~eC~~~~~Cs--~~C~----~~~~~g~~~C~C~~G~~l~~-d~~~C~~~ 214 (841)
. ..|. +++|.. .+|. ..|. ++ .++|+|.|++||.+.. ++..|.++
T Consensus 86 ~--~~C~-~d~C~~-~~C~~~g~C~~~~~~~--~g~~~C~C~~Gy~g~~~~~~~C~~~ 137 (186)
T 1z1y_A 86 E--DTCV-LDVCQY-XNCGESGECIVEYLSE--IQSAGCSCAIGXVPNPEDEXXCTXT 137 (186)
T ss_dssp T--TEEE-EGGGTT-CCCCTTEEEEEEEETT--EEEEEEEECTEEEEETTTTTEEEEE
T ss_pred C--CCCC-CCcCcC-CCCCCCCEEeeCCcCC--CCCceEECCCCCcccCCCCCcceEc
Confidence 3 3676 788853 3464 3565 77 8899999999999865 67888765
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.5e-05 Score=81.36 Aligned_cols=220 Identities=10% Similarity=0.054 Sum_probs=140.0
Q ss_pred CCCCccceEEeeecCceeEEEeeecCCCC---C---CCCCCEEEEccCCC---ccccccc-c----CcCCCceEEEE-cc
Q psy14257 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPS---N---SSDGGIEKAGMHGE---NRSPLVT-K----NIQWPSSLVID-YN 359 (841)
Q Consensus 295 ~l~~p~giavD~~~~~~y~~~td~~~~~~---~---~~~~~I~~~~~dG~---~~~~l~~-~----~~~~P~glavD-~~ 359 (841)
++.++.++.+|.. ++|+|.++-.-+... . ...++|..+++... ..+.+.. . .-..-+.|+|| ..
T Consensus 85 ~lvsV~~v~iD~~-~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~ 163 (381)
T 3q6k_A 85 ELTSIYQPVIDDC-RRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN 163 (381)
T ss_dssp SSSCEEEEEECTT-CEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred ceEEeeEEEEcCC-CcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEeccc
Confidence 5778888999964 456665443212111 1 33568888887654 3333221 1 12335678898 32
Q ss_pred ------CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCc
Q psy14257 360 ------QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQ 433 (841)
Q Consensus 360 ------~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~ 433 (841)
++.+|++|.....|.++++.......+.... +.. | .-..+..+|.
T Consensus 164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-~~p------------------------d----~~~~~~i~G~ 214 (381)
T 3q6k_A 164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-FKA------------------------E----RPTKFDYGGK 214 (381)
T ss_dssp TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG-GSC------------------------C----SCEEEEETTE
T ss_pred CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC-Ccc------------------------c----cCcceEECCE
Confidence 6788999988888888888644333332110 000 0 0011223343
Q ss_pred eEEEEecCCCCCceeEEEcCC----CCeEEEEecCCCCCeEEEecC----CCC---CcEEEEEecccCCC-CCCceeEEE
Q psy14257 434 FRRTLIAGDMESPRAIALDPR----FGLLFWTDWDSKAPRIERCSM----SGE---HRSVIVRVDLLTSR-GAWPNGLTL 501 (841)
Q Consensus 434 ~~~~l~~~~l~~P~giavd~~----~g~Ly~td~~~~~~~I~r~~l----dG~---~~~~i~~~~~~~~~-~~~P~glal 501 (841)
... . .....|||++|. .+.|||.--. ..+++++.. +.+ ..+.+.. .. .....++++
T Consensus 215 ~~~--~---~~Gi~gIaLsp~~~~~~~~LYf~pls--s~~ly~V~T~~L~~~~~~~~v~~~G~-----kg~~s~~~~~~~ 282 (381)
T 3q6k_A 215 EYE--F---KAGIFGITLGDRDSEGNRPAYYLAGS--AIKVYSVNTKELKQKGGKLNPELLGN-----RGKYNDAIALAY 282 (381)
T ss_dssp EEE--E---CCCEEEEEECCCCTTSCCEEEEEESS--CSEEEEEEHHHHSSTTCCCCCEEEEE-----CCTTCCEEEEEE
T ss_pred EeE--e---ccCceEEEecCCcCCCCeEEEEEECC--CCcEEEEEHHHhhCcchhhceEEeee-----cCCCCCcceEEE
Confidence 221 1 135679999998 7899999976 678998873 222 2333333 22 234457889
Q ss_pred eccCCEEEEEeCCCCeEEEEEcCC-----CeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCC
Q psy14257 502 DYQLTRIYWIDAKSDSIHTVTYDG-----KDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWR 557 (841)
Q Consensus 502 D~~~~~LYw~d~~~~~I~~~~~dG-----~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~ 557 (841)
|..++.||+++...+.|.+.+.++ .+..++++.. .+..|.+|++. +++||++..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEECS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEECc
Confidence 867899999999999999999998 4667788776 78999999994 7899998754
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-08 Score=81.02 Aligned_cols=52 Identities=29% Similarity=0.511 Sum_probs=42.7
Q ss_pred eeccCccCcCCcCCCCCCCCCCC-CCCC-CCCCCCCCcccCCC-CeEecCCCCCC
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELA-EHCQ-DRKCDESHFTCNET-LRCIPLAWACD 53 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~-~~C~-~~~C~~~~~~C~~~-~~Ci~~~~~Cd 53 (841)
+|||..|+|||..||.|||||.. ..|. ..+|.+.+|+|.+. +.||+....+.
T Consensus 21 ~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~gL 75 (80)
T 2kny_A 21 VCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRKL 75 (80)
T ss_dssp CEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTTT
T ss_pred eEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHHH
Confidence 69999999999999999999983 2576 47899999999732 68998766543
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.3e-07 Score=85.18 Aligned_cols=90 Identities=28% Similarity=0.746 Sum_probs=69.9
Q ss_pred ccCCCCCeEecC----CCCCCCCCCCCCCCCCccc----------------ccccccCCCCCC--Ccc-------cCCCC
Q psy14257 101 DCQDVLRTCIPK----ALVCDGEPACFNGEDEMFC----------------DEKQCLRSDCHH--DCY-------NTPEG 151 (841)
Q Consensus 101 ~C~~~~~~Ci~~----~~~Cdg~~~C~~g~de~~C----------------~eC~~~~~~C~~--~C~-------~~~g~ 151 (841)
+|.++ +.|++. ++.| .|+.||.+..| ++|. ..+|.+ .|. ++.++
T Consensus 7 pC~~~-g~C~~~~~~g~~~C----~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~--~~~C~~~g~C~~~~~~~~~~~~~ 79 (143)
T 4d90_A 7 PCENG-GICLPGLADGSFSC----ECPDGFTDPNCSSVVEVASDEEEPTSAGPCT--PNPCHNGGTCEISEAYRGDTFIG 79 (143)
T ss_dssp CCGGG-CEEEC-----CCEE----ECCTTCCTTTTCSCCCCTTTTTSCCCCCTTS--SCCCCTTCEEEECCCEETTEECC
T ss_pred cCCCC-CEeeCCCCCCCEEe----ECCCCCCCCCCccCccccccccccccCCcCC--CCCCCCCCEecCCCccccCCCCC
Confidence 47776 888874 5789 89999977666 1233 335643 787 77889
Q ss_pred cEEecCCCceecCCCCccc-cccccCCCCCcc--CceeecCCCCceEEeecCCeee
Q psy14257 152 FMCVCPRDMYLQPDLITCS-YLHPCEAWGTCS--QDCEPSVSNNSYKCTCHAGYEL 204 (841)
Q Consensus 152 ~~C~C~~Gy~l~~d~~~C~-~~~eC~~~~~Cs--~~C~~~~~~g~~~C~C~~G~~l 204 (841)
|.|.|++||. +..|+ ++++|. ..+|. ..|.++ .++|+|.|++||..
T Consensus 80 ~~C~C~~G~~----G~~C~~~i~~C~-~~~C~~~~~C~~~--~g~~~C~C~~G~~G 128 (143)
T 4d90_A 80 YVCKCPRGFN----GIHCQHNINECE-VEPCKNGGICTDL--VANYSCECPGEFMG 128 (143)
T ss_dssp EEEECCTTEE----STTSCEECCTTT-TCCSCTTCEEEEE--TTEEEEECCTTCBS
T ss_pred eEeECcCCCc----CCCcccCCCcCC-CCCCCCCCEeECC--CCCeEeECCCCCcc
Confidence 9999999995 78897 999995 44674 489999 99999999999974
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.3e-07 Score=96.77 Aligned_cols=70 Identities=29% Similarity=0.724 Sum_probs=62.2
Q ss_pred CCCC--CcccCCCCcEEecCCCceecCCCCccc-cccccCC--CCCccCceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 140 DCHH--DCYNTPEGFMCVCPRDMYLQPDLITCS-YLHPCEA--WGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 140 ~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~-~~~eC~~--~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
+|.+ .|.++.++|.|.|++||. ++.|+ +++||.. ..+|.+.|.++ .++|+|.|++||.+..+++.|.+.
T Consensus 12 pC~~~g~C~~~~~~~~C~C~~g~~----g~~C~~~~~eC~~~~~~~C~~~C~~~--~g~~~C~C~~g~~~~~~~~~C~~~ 85 (317)
T 3h5c_B 12 PCLHNGSCQDSIWGYTCTCSPGYE----GSNCELAKNECHPERTDGCQHFCLPG--QESYTCSCAQGYRLGEDHKQCVPH 85 (317)
T ss_dssp CCTTTCCCCCCSSSCCCCCSSSCC----SSSSCCCSSSCCTTCTTSCSSEEECC--SSSCEEECCTTEECCTTSSCCEEC
T ss_pred CCCCCCEeECCCCCeEEECCCCCc----CCccccCcccCCCCCCCCCcCccccC--CCeeEEeccccccccccccccccc
Confidence 5653 799999999999999996 77998 9999974 37899999999 999999999999999899999987
Q ss_pred C
Q psy14257 215 S 215 (841)
Q Consensus 215 ~ 215 (841)
+
T Consensus 86 ~ 86 (317)
T 3h5c_B 86 D 86 (317)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00054 Score=74.61 Aligned_cols=299 Identities=7% Similarity=0.011 Sum_probs=153.7
Q ss_pred EEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee
Q psy14257 449 IALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH 528 (841)
Q Consensus 449 iavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~ 528 (841)
.++.|+..+|+++.......+|+..++++...+.+.. .......++++.+++++|+++.. ...|+..++++...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-----~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-----GRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEE 114 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-----SSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-----CCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCcc
Confidence 5788888777777653235579999998776555543 11112235788988899999885 36899999998776
Q ss_pred EEEEcCCCCCCcceEEEE-ecCeEEEE----------------------eCCCCeEEEEeccCCcceEEEecccCCCcee
Q psy14257 529 HVVLSNHDSLTHPFAIAL-FENHVYWT----------------------DWRTNSVIRANKWNGSDVTLIQRTLTQPFIY 585 (841)
Q Consensus 529 ~~i~~~~~~l~~P~gla~-~~~~lY~t----------------------d~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~ 585 (841)
+.+..............+ .++.++.. ......|+.++..+|+...+.... ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~---- 189 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-QW---- 189 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-SC----
T ss_pred eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-cc----
Confidence 666543321110011111 12322221 011234555554444322221100 00
Q ss_pred ccCCcccCCCCCCCCCCccccccCCCCceeeeCC-CCceeecCCCcccccCceeEEeec-------CCeEEEEecCCCCc
Q psy14257 586 VNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCP-HVMKLMSDNKTCQVADSQFIIFSR-------PREIRGVDLEHPYY 657 (841)
Q Consensus 586 h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp-~g~~l~~d~~tC~~~~~~~l~~~~-------~~~i~~~~l~~~~~ 657 (841)
-. .....| +| ..|+++. ...|+.++++....
T Consensus 190 ----------------~~----------~~~~sp~dg---------------~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 190 ----------------LG----------HPIYRPYDD---------------STVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp ----------------EE----------EEEEETTEE---------------EEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred ----------------cc----------ccEECCCCC---------------CEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 00 001111 11 1222221 22566666554322
Q ss_pred cccceeecCCCCCceEEEEecCCCEEEEEECC-CC---eEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEe
Q psy14257 658 HTIPTISIPQVFSPNNLNFDAANKKIYWTDQE-YN---EVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVV 733 (841)
Q Consensus 658 ~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~-~~---~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 733 (841)
..+. .......+..++|.|..+.|+++... .. .|+++++.+...+.+... .+ ...
T Consensus 229 ~~l~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---------------~~--~~~-- 287 (388)
T 3pe7_A 229 RKVK--THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM---------------PA--CSH-- 287 (388)
T ss_dssp EESC--CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE---------------CC--EEE--
T ss_pred EEee--eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC---------------CC--cee--
Confidence 2111 01000124567899999988665432 22 399998887652221100 00 000
Q ss_pred eCCCCCcceeEEeecCCcEEEEecC------CCCCeEEEEecCCcceEEEEcCCCC-C---CCcCCCceEEEEeCCCCeE
Q psy14257 734 DAGISHPSGLAIDWIAQNMFIAVSS------PTQSKIVVCNLEGEYQTTILSNESN-D---TSTLSKISSIAVWPVKGKM 803 (841)
Q Consensus 734 ~~~~~~p~glAvD~~~~~LYw~~~~------~~~~~I~v~~l~g~~~~~~~~~~~~-~---~~~l~~p~~iavd~~~g~l 803 (841)
....+.++++.+.++.|+++..+ .....|.++++++...+.+...... . .........++..|...+|
T Consensus 288 --~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l 365 (388)
T 3pe7_A 288 --LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQI 365 (388)
T ss_dssp --EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred --eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEE
Confidence 01236677888889999986322 3567899999998766556543100 0 0000145677899988889
Q ss_pred EEEecCCCcceEEEEecCC
Q psy14257 804 FWSNVTKQVVTIEMAFMDG 822 (841)
Q Consensus 804 yw~d~~~~~~~I~~~~~dG 822 (841)
+++......+.|.+++++.
T Consensus 366 ~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 366 LFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EEEECTTSSCEEEEEECCG
T ss_pred EEEecCCCceeEEEEECCh
Confidence 9887644346788887754
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-07 Score=78.88 Aligned_cols=65 Identities=29% Similarity=0.595 Sum_probs=52.6
Q ss_pred cccCCCCCeEecC--CCCCCCCCCCCCCCC-----Cccc---ccccccCCCCC-CCcccCCCCcEEecCCCceecCCCCc
Q psy14257 100 FDCQDVLRTCIPK--ALVCDGEPACFNGED-----EMFC---DEKQCLRSDCH-HDCYNTPEGFMCVCPRDMYLQPDLIT 168 (841)
Q Consensus 100 ~~C~~~~~~Ci~~--~~~Cdg~~~C~~g~d-----e~~C---~eC~~~~~~C~-~~C~~~~g~~~C~C~~Gy~l~~d~~~ 168 (841)
..|.+ +.|++. +|.| .|+.||. +..| +||...+..|. +.|.|++++|+|.|++||.+.+++++
T Consensus 11 ~~C~~--g~C~n~~g~y~C----~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~ 84 (86)
T 1lmj_A 11 DLCGR--GQCVNTPGDFEC----KCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISA 84 (86)
T ss_dssp STTTT--SCEEEETTEEEE----CCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCC
T ss_pred CCCCC--CEEECCCCCEEe----eCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCc
Confidence 34654 577765 7889 8999985 5568 78987666786 58999999999999999999888887
Q ss_pred cc
Q psy14257 169 CS 170 (841)
Q Consensus 169 C~ 170 (841)
|.
T Consensus 85 Ci 86 (86)
T 1lmj_A 85 CI 86 (86)
T ss_dssp CC
T ss_pred cC
Confidence 73
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0012 Score=78.93 Aligned_cols=159 Identities=8% Similarity=-0.019 Sum_probs=97.8
Q ss_pred cCCCceEEEEccCCEEEEEeCCCC-----eEEEEEecCCccEEEEeeeeecCCC-cccc--------------CCCCCCc
Q psy14257 348 IQWPSSLVIDYNQDILYWCDSHLN-----TVESVRVDGSERTVSFNLEVLGSDS-RVGI--------------PNCRPED 407 (841)
Q Consensus 348 ~~~P~glavD~~~~~lYwaD~~~~-----~I~~~~ldG~~~~~~~~~~~~~~~~-~~~i--------------~~~~~~a 407 (841)
...+..+++.+++++|+++....+ .|+..++++...+.+........+. .+.. ..-...+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 345788999999999999987444 8999999887766655432111000 0000 0001123
Q ss_pred cccccceEEEEecCCCcEEEEccCCc---eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEE
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSGQ---FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIV 484 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G~---~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~ 484 (841)
+...++.|+++.. +.|.+.++++. ..+.+.. .-..+..++++|++.+|+++. ...|+..++++.....+.
T Consensus 116 ~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~----~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIR----GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp ECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEE----TTEEEEEETTTTEEEECC
T ss_pred ECCCCCEEEEEeC--CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEe----CCcEEEEecCCCCEEEec
Confidence 4445567777765 78999999876 4443332 235678999999988888876 347999998875444332
Q ss_pred EecccC-----------CCCCCceeEEEeccCCEEEEEeC
Q psy14257 485 RVDLLT-----------SRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 485 ~~~~~~-----------~~~~~P~glalD~~~~~LYw~d~ 513 (841)
...... ..+..+.++++.+++++|+++..
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~ 228 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI 228 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence 210000 00112577899988888888743
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.026 Score=71.63 Aligned_cols=148 Identities=10% Similarity=-0.014 Sum_probs=79.7
Q ss_pred CCeEEecc-CccccccccccccEEEEecc-ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCC
Q psy14257 220 SPFVIFSN-RHELRGVDLRTFNVIALISS-LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLS 297 (841)
Q Consensus 220 ~p~ll~s~-~~~I~~~~~~~~~~~~l~~~-~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~ 297 (841)
..+++... ...|+..++........+.+ ...+.++.|.... . +..+-..++.|...++..+. ....+...-.
T Consensus 627 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~-~--~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~ 700 (1249)
T 3sfz_A 627 GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD-S--YIATCSADKKVKIWDSATGK---LVHTYDEHSE 700 (1249)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-S--EEEEEETTSEEEEEETTTCC---EEEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCC-C--EEEEEeCCCeEEEEECCCCc---eEEEEcCCCC
Confidence 34444333 34455555555433322332 3456788887753 3 44454567888888876653 2222333333
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
....+++.+.++..+++.. ..++.|..+++............-.....+++.+.++.|+.+ ...+.|...+
T Consensus 701 ~v~~~~~~~~~~~~~l~sg--------~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~dg~v~vwd 771 (1249)
T 3sfz_A 701 QVNCCHFTNKSNHLLLATG--------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC-SADGTLRLWD 771 (1249)
T ss_dssp CEEEEEECSSSSCCEEEEE--------ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEE-ESSSEEEEEE
T ss_pred cEEEEEEecCCCceEEEEE--------eCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEE-ECCCeEEEEe
Confidence 4455666554333344322 235678888876544333333344556778888876655544 4556777777
Q ss_pred ecCCc
Q psy14257 378 VDGSE 382 (841)
Q Consensus 378 ldG~~ 382 (841)
+....
T Consensus 772 ~~~~~ 776 (1249)
T 3sfz_A 772 VRSAN 776 (1249)
T ss_dssp GGGTE
T ss_pred CCCCc
Confidence 75443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-05 Score=89.32 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=128.4
Q ss_pred cCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcc-c-cccceEEEEe-----------------
Q psy14257 359 NQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN-L-WIGKNLYWVE----------------- 419 (841)
Q Consensus 359 ~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~av-d-w~~~~LY~tD----------------- 419 (841)
++++||+.|..+++|.+++++......++.+.....+ .|+ ++ . ..++.||.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~p--hg~------~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGI--HGL------RPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSE--EEE------EECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCC--cce------eeeecCCCcEEEEecccccccCCCCccccccc
Confidence 7899999999999999999998766554433211111 111 11 1 2347787773
Q ss_pred cCCCcEEEEccCCceEE-EEecCCCCCceeEEEcCCCCeEEEEecCCCC------------CeEEEecC--------CCC
Q psy14257 420 SNLDQIEVAKLSGQFRR-TLIAGDMESPRAIALDPRFGLLFWTDWDSKA------------PRIERCSM--------SGE 478 (841)
Q Consensus 420 ~~~~~I~v~~~~G~~~~-~l~~~~l~~P~giavd~~~g~Ly~td~~~~~------------~~I~r~~l--------dG~ 478 (841)
...+.+.+++.+..... .+...+ +|.+++++|.++++|+|...++. ..|...+. +|.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred ccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 44557888888764333 333233 79999999999999999976322 11222221 221
Q ss_pred C----cEEEEEeccc-C-------CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe---------e-EEEEcCCC
Q psy14257 479 H----RSVIVRVDLL-T-------SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD---------H-HVVLSNHD 536 (841)
Q Consensus 479 ~----~~~i~~~~~~-~-------~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~---------~-~~i~~~~~ 536 (841)
. ...+++.... . ..-..|.|+.+.++++++|+++...+.|..++++... . .++.. ..
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~-v~ 328 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-PE 328 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC-CB
T ss_pred eeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE-cC
Confidence 1 1112221100 0 0124799999999999999999999999999998431 0 12222 12
Q ss_pred CCCcceEEEEe-cCeEEEEeCCCCeEEEEeccC
Q psy14257 537 SLTHPFAIALF-ENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 537 ~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~ 568 (841)
.-..|.++++. +|++|.+.+-.+.|.+++..+
T Consensus 329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 23579999995 479999999999999888544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00059 Score=75.77 Aligned_cols=245 Identities=9% Similarity=0.083 Sum_probs=146.3
Q ss_pred CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEe
Q psy14257 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502 (841)
Q Consensus 423 ~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD 502 (841)
+.|.+.+++|...+.+... -.....+++.|...+|+++........|+..++++.....+.. .-.....+++.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~-~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~------~~~~~~~~~~s 231 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------FPRHNGAPAFS 231 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC------CSSCEEEEEEC
T ss_pred ceEEEEcCCCCCCEEEeCC-CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec------CCCcccCEEEc
Confidence 6899999998776666542 3567899999998888888765334689999998665554432 22356789999
Q ss_pred ccCCEEEEEeCC--CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEEEecc
Q psy14257 503 YQLTRIYWIDAK--SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTLIQRT 578 (841)
Q Consensus 503 ~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~ 578 (841)
+++.+|+++-.. ...|+.+++.+.....+.... .....+++. +.+|+++....+.
T Consensus 232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdg~~l~~~s~~~g~------------------ 290 (415)
T 2hqs_A 232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR---SNNTEPTWFPDSQNLAFTSDQAGR------------------ 290 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS---SCEEEEEECTTSSEEEEEECTTSS------------------
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCC---CcccceEECCCCCEEEEEECCCCC------------------
Confidence 888888877543 346888888765544332211 112233331 1223333211110
Q ss_pred cCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCcc
Q psy14257 579 LTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYH 658 (841)
Q Consensus 579 ~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~ 658 (841)
..|+.++++.....
T Consensus 291 ------------------------------------------------------------------~~i~~~d~~~~~~~ 304 (415)
T 2hqs_A 291 ------------------------------------------------------------------PQVYKVNINGGAPQ 304 (415)
T ss_dssp ------------------------------------------------------------------CEEEEEETTSSCCE
T ss_pred ------------------------------------------------------------------cEEEEEECCCCCEE
Confidence 01222222211100
Q ss_pred ccceeecCCCCCceEEEEecCCCEEEEEECC--CCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCC
Q psy14257 659 TIPTISIPQVFSPNNLNFDAANKKIYWTDQE--YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAG 736 (841)
Q Consensus 659 ~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 736 (841)
.+.. ....+..++|.|..+.|+++... ...|+.+++.+.. ... +...
T Consensus 305 ---~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~--------------------------~~~-l~~~ 353 (415)
T 2hqs_A 305 ---RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--------------------------VQV-LSST 353 (415)
T ss_dssp ---ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--------------------------EEE-CCCS
T ss_pred ---EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC--------------------------EEE-ecCC
Confidence 0000 01223456777777777777643 3477777777654 222 2222
Q ss_pred CCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCC
Q psy14257 737 ISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVK 800 (841)
Q Consensus 737 ~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~ 800 (841)
..+..+++.+.++.|+++..+....+|.+++++|...+.+... -...+.++..|+.
T Consensus 354 -~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~-------~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 354 -FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT-------DGQVKFPAWSPYL 409 (415)
T ss_dssp -SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS-------SSEEEEEEECCCC
T ss_pred -CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC-------CCCCcCCcccccc
Confidence 2678899999999898885443344899999998877666543 3567788888764
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.9e-07 Score=75.79 Aligned_cols=61 Identities=28% Similarity=0.660 Sum_probs=50.5
Q ss_pred CeEecC--CCCCCCCCCCCCCCC----Cccc---ccccccCCCCCCCcccCCCCcEEec--CCCceecCCCCcccccc
Q psy14257 107 RTCIPK--ALVCDGEPACFNGED----EMFC---DEKQCLRSDCHHDCYNTPEGFMCVC--PRDMYLQPDLITCSYLH 173 (841)
Q Consensus 107 ~~Ci~~--~~~Cdg~~~C~~g~d----e~~C---~eC~~~~~~C~~~C~~~~g~~~C~C--~~Gy~l~~d~~~C~~~~ 173 (841)
+.|++. +|.| .|+.||. +..| +||. ..+|.+.|.|++++|+|.| ..||.+..+++.|++++
T Consensus 16 ~~C~n~~g~y~C----~C~~G~~~~~~g~~C~dideC~--~~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~di~ 87 (87)
T 1z6c_A 16 AVCKNIPGDFEC----ECPEGYRYNLKSKSCEDIDECS--ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87 (87)
T ss_dssp SSCCCBTTBCCC----SSSTTCEEETTTTEEECCCHHH--HSCCSSEECCCSSSCCEECCSSSCCBCCTTSSSCBCCC
T ss_pred CEeECCCCCEEE----ECCCCceECCCCCcCCCcCeeC--CCCCCCEEEccCCCEEEECCCCcCCcccCCCCcceECc
Confidence 566554 7889 8999995 5668 7886 3579999999999999999 69999988888888763
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.5e-07 Score=72.58 Aligned_cols=42 Identities=24% Similarity=0.598 Sum_probs=38.6
Q ss_pred ccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 591 KKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 591 ~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
..|+|..+||+|+|+|+..+.++|+|.|+.||.|.+|+++|.
T Consensus 4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~ 45 (69)
T 1kli_L 4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 45 (69)
T ss_dssp CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEE
T ss_pred ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCccc
Confidence 468999999999999998876579999999999999999998
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00017 Score=78.69 Aligned_cols=287 Identities=10% Similarity=0.003 Sum_probs=145.9
Q ss_pred ecccccCCcceeEEEecCCC--eEEEEEecCCcccceEEEEeCCCCCc-cceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 254 LDFYYTPTANMVFWTDVIDD--KIYNATLIGNSLSNIDVVVQTGLSTA-EGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 254 vd~~~~~~~~~lyw~d~~~~--~I~~~~~~~~~~~~~~~~~~~~l~~p-~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
..|.+..+. |+++-...+ .|+..++.++. ...+. .+-..+ .++++.+.++.+++. . .+..|
T Consensus 41 ~~~SpDg~~--l~~~~~~~g~~~l~~~d~~~g~---~~~lt-~~~~~~~~~~~~spdg~~l~~~--~--------~~~~l 104 (388)
T 3pe7_A 41 KCFTRDGSK--LLFGGAFDGPWNYYLLDLNTQV---ATQLT-EGRGDNTFGGFLSPDDDALFYV--K--------DGRNL 104 (388)
T ss_dssp CCBCTTSCE--EEEEECTTSSCEEEEEETTTCE---EEECC-CSSCBCSSSCEECTTSSEEEEE--E--------TTTEE
T ss_pred ccCCCCCCE--EEEEEcCCCCceEEEEeCCCCc---eEEee-eCCCCCccceEEcCCCCEEEEE--e--------CCCeE
Confidence 345444332 444433233 57777776653 12221 111112 256777766555442 1 12468
Q ss_pred EEEccCCCccccccccCcCCCc--eEEEEccCCEEEEEe---------------------CCCCeEEEEEecCCccEEEE
Q psy14257 331 EKAGMHGENRSPLVTKNIQWPS--SLVIDYNQDILYWCD---------------------SHLNTVESVRVDGSERTVSF 387 (841)
Q Consensus 331 ~~~~~dG~~~~~l~~~~~~~P~--glavD~~~~~lYwaD---------------------~~~~~I~~~~ldG~~~~~~~ 387 (841)
++.++++...+.+....-.+.. ..++++++..|+... .....|++++++++..+.+.
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 8888876655544332222111 122355555554322 12357888888776665554
Q ss_pred eeeeecCCCccccCCCCCCcccc-ccceEEEEecC-----CCcEEEEccCCceEEEEecCCC-CCceeEEEcCCCCeEEE
Q psy14257 388 NLEVLGSDSRVGIPNCRPEDNLW-IGKNLYWVESN-----LDQIEVAKLSGQFRRTLIAGDM-ESPRAIALDPRFGLLFW 460 (841)
Q Consensus 388 ~~~~~~~~~~~~i~~~~~~avdw-~~~~LY~tD~~-----~~~I~v~~~~G~~~~~l~~~~l-~~P~giavd~~~g~Ly~ 460 (841)
....... ..++.. .++.|+++... ..+|++.+++|...+.+..... .....+++.|+..+|++
T Consensus 185 ~~~~~~~----------~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 185 QENQWLG----------HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVY 254 (388)
T ss_dssp EESSCEE----------EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred cCCcccc----------ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEE
Confidence 3211000 011222 33556555432 4589999988876655543221 12446789998777755
Q ss_pred EecCCCCC--eEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEe--------CCCCeEEEEEcCCCeeEE
Q psy14257 461 TDWDSKAP--RIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWID--------AKSDSIHTVTYDGKDHHV 530 (841)
Q Consensus 461 td~~~~~~--~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d--------~~~~~I~~~~~dG~~~~~ 530 (841)
+....... .|++.++++...+.+............|.++++.+++++|+++- .....|+.+++++...+.
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR 334 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEE
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE
Confidence 44321233 49999998777666544210000001256667777777787653 445689999999887766
Q ss_pred EEcCCCCCC--------cceEEEE--ecCeEEEEeCCC--CeEEEEec
Q psy14257 531 VLSNHDSLT--------HPFAIAL--FENHVYWTDWRT--NSVIRANK 566 (841)
Q Consensus 531 i~~~~~~l~--------~P~gla~--~~~~lY~td~~~--~~i~~~~~ 566 (841)
+........ ....+++ .+.+||++.... ..|++++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 335 VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred eccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 654432000 1234455 345777765433 23445443
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.3e-07 Score=63.70 Aligned_cols=38 Identities=37% Similarity=0.886 Sum_probs=34.1
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+.+|.|.+. +.||+.+++|||..+|.+|+||..|
T Consensus 2 ~~C~~~~F~C~~~-g~CI~~~~~CDg~~DC~DgSDE~~C 39 (42)
T 1cr8_A 2 GGCHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSC 39 (42)
T ss_dssp CCSSTTCEECTTT-CCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred CCCCCCceEeCCC-CeEcChhhcCCCCcCCCCCCcccCC
Confidence 3688899999865 8999999999999999999999766
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00014 Score=77.51 Aligned_cols=146 Identities=13% Similarity=0.177 Sum_probs=98.1
Q ss_pred eEEEEecC--CCcEEEEccCC--ceEEEEe------cCCCCCceeEEE--cCCCC--eEEEEecCCCCCeEEEecC----
Q psy14257 414 NLYWVESN--LDQIEVAKLSG--QFRRTLI------AGDMESPRAIAL--DPRFG--LLFWTDWDSKAPRIERCSM---- 475 (841)
Q Consensus 414 ~LY~tD~~--~~~I~v~~~~G--~~~~~l~------~~~l~~P~giav--d~~~g--~Ly~td~~~~~~~I~r~~l---- 475 (841)
.+|.++.. .++|.+++++. ...+.+. ...+..|.||++ ++..+ ++|+++.. ++++...+
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~---G~~~q~~l~~~~ 164 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE---GEFEQYELKADK 164 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS---SEEEEEEEEECT
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC---CeEEEEEEEeCC
Confidence 57899988 89999997752 2333331 245689999999 88767 57777743 57766555
Q ss_pred CCCCc-EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCe-eEEEEc-CCCCCC-cceEEEEe-c
Q psy14257 476 SGEHR-SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKD-HHVVLS-NHDSLT-HPFAIALF-E 548 (841)
Q Consensus 476 dG~~~-~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~-~~~i~~-~~~~l~-~P~gla~~-~ 548 (841)
+|... +.+-.. ..-..|.|+++|...++||+++... .|++++.+ +.. .+.+.. ..+.+. .|.||+++ .
T Consensus 165 ~g~~~~~lVR~f----~lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~ 239 (355)
T 3amr_A 165 NGYISGKKVRAF----KMNSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA 239 (355)
T ss_dssp TSCEEEEEEEEE----ECSSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC
T ss_pred CCcccceEEEEe----cCCCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec
Confidence 23222 222222 1234799999999999999999975 49999955 322 233322 122343 79999995 2
Q ss_pred ----CeEEEEeCCCCeEEEEecc
Q psy14257 549 ----NHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 549 ----~~lY~td~~~~~i~~~~~~ 567 (841)
++|++++.++++...++..
T Consensus 240 ~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 240 ADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp GGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCCEEEEEEcCCCCEEEEEECC
Confidence 5899999888887777653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0082 Score=65.47 Aligned_cols=280 Identities=7% Similarity=-0.067 Sum_probs=156.0
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d 524 (841)
....|+++|...+|+.... .+.|...+.+|.....+. ..-.....+++.+.+..|+.+.. .+.|...++.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~ 179 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVE---NGELRLWNKTGALLNVLN------FHRAPIVSVKWNKDGTHIISMDV-ENVTILWNVI 179 (425)
T ss_dssp CEEEEEECTTSSEEEEEET---TSCEEEEETTSCEEEEEC------CCCSCEEEEEECTTSSEEEEEET-TCCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCeeeecc------CCCccEEEEEECCCCCEEEEEec-CCeEEEEECC
Confidence 5778999998667766654 356666666665444432 23445688999887777776654 6788888886
Q ss_pred CCeeEEEEcCCCCCC-------------cceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcc
Q psy14257 525 GKDHHVVLSNHDSLT-------------HPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVK 591 (841)
Q Consensus 525 G~~~~~i~~~~~~l~-------------~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~ 591 (841)
.......+....... ....+++..+..+++-...+.|...+..+++....+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~------------- 246 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH------------- 246 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCC-------------
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC-------------
Confidence 554433332211100 044556544444455455566666665544333222110
Q ss_pred cCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeec-CCeEEEEecCCCCccccceeecCCCCC
Q psy14257 592 KSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSR-PREIRGVDLEHPYYHTIPTISIPQVFS 670 (841)
Q Consensus 592 ~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~-~~~i~~~~l~~~~~~~~~~~~~~~~~~ 670 (841)
.....+. .+.++ ..+|+.+. ...|+..++..... ...+. .....
T Consensus 247 -------------------~~~i~~~-----~~~~~--------~~~l~~~~~d~~i~i~d~~~~~~--~~~~~-~~~~~ 291 (425)
T 1r5m_A 247 -------------------HGPISVL-----EFNDT--------NKLLLSASDDGTLRIWHGGNGNS--QNCFY-GHSQS 291 (425)
T ss_dssp -------------------SSCEEEE-----EEETT--------TTEEEEEETTSCEEEECSSSBSC--SEEEC-CCSSC
T ss_pred -------------------CCceEEE-----EECCC--------CCEEEEEcCCCEEEEEECCCCcc--ceEec-CCCcc
Confidence 0001110 11111 12333333 44566665543221 11111 12245
Q ss_pred ceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCC
Q psy14257 671 PNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQ 750 (841)
Q Consensus 671 ~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~ 750 (841)
+..++|.+.. ++++-...+.|+..++.... ....+......+..|++.+.++
T Consensus 292 i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~--------------------------~~~~~~~~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 292 IVSASWVGDD--KVISCSMDGSVRLWSLKQNT--------------------------LLALSIVDGVPIFAGRISQDGQ 343 (425)
T ss_dssp EEEEEEETTT--EEEEEETTSEEEEEETTTTE--------------------------EEEEEECTTCCEEEEEECTTSS
T ss_pred EEEEEECCCC--EEEEEeCCCcEEEEECCCCc--------------------------EeEecccCCccEEEEEEcCCCC
Confidence 7889999876 44555578899998886544 2223333455788899998887
Q ss_pred cEEEEecCCCCCeEEEEecCCcc--------------------eEEEEcCCCCCCCcCC--CceEEEEeCCCCeEEEEec
Q psy14257 751 NMFIAVSSPTQSKIVVCNLEGEY--------------------QTTILSNESNDTSTLS--KISSIAVWPVKGKMFWSNV 808 (841)
Q Consensus 751 ~LYw~~~~~~~~~I~v~~l~g~~--------------------~~~~~~~~~~~~~~l~--~p~~iavd~~~g~lyw~d~ 808 (841)
.|+... ..+.|.+.++.... ....+... .. .+..+++.|...+|+-...
T Consensus 344 ~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 344 KYAVAF---MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS------QDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EEEEEE---TTSCEEEEECHHHHC--------------CEECCEEEEECCT------TCCCCEEEEEECTTSSEEEEEES
T ss_pred EEEEEE---CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc------ccCCceEEEEccCCCceEEEEec
Confidence 776663 46789999987544 22222220 22 7889999988777766554
Q ss_pred CCCcceEEEEecCC
Q psy14257 809 TKQVVTIEMAFMDG 822 (841)
Q Consensus 809 ~~~~~~I~~~~~dG 822 (841)
.. +|...+++|
T Consensus 415 dg---~i~iw~~~g 425 (425)
T 1r5m_A 415 LQ---EGSVVAIPG 425 (425)
T ss_dssp SS---CCEEEECCC
T ss_pred Cc---eEEEEeecC
Confidence 33 466666655
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-05 Score=87.38 Aligned_cols=209 Identities=13% Similarity=0.112 Sum_probs=123.8
Q ss_pred ccccCcCCCceEEEEccCC-EEEEEeCCCCeEEEEEecCCcc-EEEEeee-eecC-------CCccccCCCCCCcccc--
Q psy14257 343 LVTKNIQWPSSLVIDYNQD-ILYWCDSHLNTVESVRVDGSER-TVSFNLE-VLGS-------DSRVGIPNCRPEDNLW-- 410 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~-~lYwaD~~~~~I~~~~ldG~~~-~~~~~~~-~~~~-------~~~~~i~~~~~~avdw-- 410 (841)
++...|..|.+|++.+++. +||+++. .++|++++.+|... +.+..+. ++.. ...+++ |++.
T Consensus 8 ~va~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgi------a~~P~f 80 (463)
T 2wg3_C 8 EVVSGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSL------AFHPNY 80 (463)
T ss_dssp EEEEEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEE------EECTTH
T ss_pred EeccCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceee------EeCCCC
Confidence 3455789999999999874 8999997 47899998777532 2222221 1111 111222 2322
Q ss_pred -ccceEEEEecC------------CCcEEEEccCC--------ceEEEEec----CCCCCceeEEEcCCCCeEEEEecCC
Q psy14257 411 -IGKNLYWVESN------------LDQIEVAKLSG--------QFRRTLIA----GDMESPRAIALDPRFGLLFWTDWDS 465 (841)
Q Consensus 411 -~~~~LY~tD~~------------~~~I~v~~~~G--------~~~~~l~~----~~l~~P~giavd~~~g~Ly~td~~~ 465 (841)
.++.||++-+. ..+|.++.++. ...++|+. ........|+++|+ |+||++--..
T Consensus 81 ~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD-G~LYv~~Gd~ 159 (463)
T 2wg3_C 81 KKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD-GFLYIILGDG 159 (463)
T ss_dssp HHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT-SCEEEEECCT
T ss_pred cCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC-CcEEEEeCCC
Confidence 24788987542 13777777742 11233332 22455678999985 8999994321
Q ss_pred ---------------CCCeEEEecCCCCC-------------------cEEEEEecccCCCCCCceeEEEeccCC-----
Q psy14257 466 ---------------KAPRIERCSMSGEH-------------------RSVIVRVDLLTSRGAWPNGLTLDYQLT----- 506 (841)
Q Consensus 466 ---------------~~~~I~r~~ldG~~-------------------~~~i~~~~~~~~~~~~P~glalD~~~~----- 506 (841)
..++|.|++.||+. +..|.. ..+..|.||++|+.++
T Consensus 160 ~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-----~G~RNp~gla~dp~tg~~~G~ 234 (463)
T 2wg3_C 160 MITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-----HGLHDPGRCAVDRHPTDININ 234 (463)
T ss_dssp TCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-----ECCSSCCBEEEESSCSSTTCS
T ss_pred CCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-----ECCCCcceEEECCCCCCcccc
Confidence 14689999999951 223444 4899999999998744
Q ss_pred -EEEEEeC-C----CCeEEEEEcCCCe----eEEEEcCCCCCCcceEEEEecC--------eEEEEeCCCCeEEEEec
Q psy14257 507 -RIYWIDA-K----SDSIHTVTYDGKD----HHVVLSNHDSLTHPFAIALFEN--------HVYWTDWRTNSVIRANK 566 (841)
Q Consensus 507 -~LYw~d~-~----~~~I~~~~~dG~~----~~~i~~~~~~l~~P~gla~~~~--------~lY~td~~~~~i~~~~~ 566 (841)
+||.+|. + ...|..+.. |.+ ..++.-....-..|.|++++.+ .++++++. ++|+++..
T Consensus 235 l~~~~~D~~G~~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~ 310 (463)
T 2wg3_C 235 LTILCSDSNGKNRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQ 310 (463)
T ss_dssp EEEEEECC------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC
T ss_pred eEEEecccCCCCCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEe
Confidence 7888885 2 124544422 221 1111111100135788988654 48888886 67877753
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=6.4e-07 Score=62.07 Aligned_cols=36 Identities=39% Similarity=0.915 Sum_probs=32.7
Q ss_pred CCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 94 ACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 94 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
+|.+.+|.|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 1 ~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 1 PCSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCCTTCEECTT--SCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCCCceEcCC--CCeechhhccCCCCCCCCCccccCC
Confidence 37788999998 8999999999999999999999766
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00017 Score=74.55 Aligned_cols=206 Identities=10% Similarity=0.030 Sum_probs=128.1
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCC-CccccccccC-cCCCceEEEEccCCEEEEEeCC---CCe
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG-ENRSPLVTKN-IQWPSSLVIDYNQDILYWCDSH---LNT 372 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG-~~~~~l~~~~-~~~P~glavD~~~~~lYwaD~~---~~~ 372 (841)
.+..+++.+.++ +++... ++.|..+++++ .....+.... ...+..+++.++++.|+++... ...
T Consensus 43 ~v~~~~~spdg~--~l~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 43 LFEAPNWSPDGK--YLLLNS---------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp CCEEEEECTTSS--EEEEEE---------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred ceEeeEECCCCC--EEEEEc---------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 456677776553 333321 34888898877 5555444332 3556789999999999998843 578
Q ss_pred EEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC--cEEEEccCCceEEEEecCCCCCceeEE
Q psy14257 373 VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD--QIEVAKLSGQFRRTLIAGDMESPRAIA 450 (841)
Q Consensus 373 I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~--~I~v~~~~G~~~~~l~~~~l~~P~gia 450 (841)
|+.+++++...+.+...... .. .++...+..|+++....+ +|+.+++++.....+. .....+..++
T Consensus 112 l~~~~~~~~~~~~~~~~~~~-----~~------~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 179 (297)
T 2ojh_A 112 IYLLPSTGGTPRLMTKNLPS-----YW------HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPD 179 (297)
T ss_dssp EEEEETTCCCCEECCSSSSE-----EE------EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEE
T ss_pred EEEEECCCCceEEeecCCCc-----cc------eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccccce
Confidence 88888877665544221100 00 012223366776655555 4555556655544433 3335678999
Q ss_pred EcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC----------CCeEEE
Q psy14257 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK----------SDSIHT 520 (841)
Q Consensus 451 vd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~----------~~~I~~ 520 (841)
++|...+|+++.......+|+.+++++.....+.. .......+++++.+..|+++... ...|+.
T Consensus 180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred ECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 99988888887643236789999887765544432 22345678888888888876542 256888
Q ss_pred EEcCCCeeEEEE
Q psy14257 521 VTYDGKDHHVVL 532 (841)
Q Consensus 521 ~~~dG~~~~~i~ 532 (841)
+++++.....+.
T Consensus 254 ~d~~~~~~~~~~ 265 (297)
T 2ojh_A 254 MDMDGGNVETLF 265 (297)
T ss_dssp EETTSCSCEEEE
T ss_pred EecCCCCceeee
Confidence 998876554443
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-06 Score=64.62 Aligned_cols=42 Identities=31% Similarity=0.850 Sum_probs=36.2
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccccccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQ 135 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C~eC~ 135 (841)
..|.+.+|.|.+. +.||+..++|||..||.+|+||..|..|.
T Consensus 5 ~~C~~~~F~C~~~-g~CI~~~~~CDG~~DC~DgSDE~~C~~C~ 46 (50)
T 2knx_A 5 KTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAGCL 46 (50)
T ss_dssp CTTCTTEEEETTT-TEEEETTTTTSSSCCSTTCGGGSGGGTCC
T ss_pred CCCCCCcEEcCCC-CeEcChhhcCCCCCCCCCCCccccccCCC
Confidence 4588899999633 89999999999999999999998875554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.02 Score=66.02 Aligned_cols=419 Identities=10% Similarity=0.000 Sum_probs=215.4
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCC---CccceEEeee-cCceeEEEeeecCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLS---TAEGLAVDWI-GKNLYMFWAFWSLSPSN 324 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~---~p~giavD~~-~~~~y~~~td~~~~~~~ 324 (841)
..+.++.|...... ++.+-...+.|...++..+. ....+..... ....+++.+. ++ +++-.
T Consensus 161 ~~v~~~~~~~~~~~--~l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~-------- 225 (615)
T 1pgu_A 161 QRINACHLKQSRPM--RSMTVGDDGSVVFYQGPPFK---FSASDRTHHKQGSFVRDVEFSPDSGE--FVITV-------- 225 (615)
T ss_dssp SCEEEEEECSSSSC--EEEEEETTTEEEEEETTTBE---EEEEECSSSCTTCCEEEEEECSTTCC--EEEEE--------
T ss_pred ccEEEEEECCCCCc--EEEEEeCCCcEEEEeCCCcc---eeeeecccCCCCceEEEEEECCCCCC--EEEEE--------
Confidence 34667778776443 56666677888877765432 1222222222 3456677654 32 22211
Q ss_pred CCCCCEEEEccC-CCccccccc---cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCcccc
Q psy14257 325 SSDGGIEKAGMH-GENRSPLVT---KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGI 400 (841)
Q Consensus 325 ~~~~~I~~~~~d-G~~~~~l~~---~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i 400 (841)
..++.|..+++. |+....+.. ..-.....+++. .++.| ++-...+.|...++........+.... ....
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~--- 298 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF-ATVGADATIRVWDVTTSKCVQKWTLDK--QQLG--- 298 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEE-EEEETTSEEEEEETTTTEEEEEEECCT--TCGG---
T ss_pred eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEE-EEEcCCCcEEEEECCCCcEEEEEcCCC--Cccc---
Confidence 235688888865 443333323 334456678887 44444 444456788888887443322222110 0000
Q ss_pred CCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc
Q psy14257 401 PNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR 480 (841)
Q Consensus 401 ~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~ 480 (841)
....++.|..+...++-...+.|.+.++........+.........+++ |. |+.... .+.|...++.
T Consensus 299 --~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~---dg~i~~w~~~---- 365 (615)
T 1pgu_A 299 --NQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSY---DGRIMEWSSS---- 365 (615)
T ss_dssp --GCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEET---TSCEEETTTT----
T ss_pred --CceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECC---CCeEEEEEch----
Confidence 0001222323555566666788888888754333333344456778888 65 333332 4566666665
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCC
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTN 559 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~ 559 (841)
.+.. ..-.....+++ ..++.|+.+. ..+.|...++.... ....|..+++.. +.+.++. ..+
T Consensus 366 -~~~~-----~~~~~v~~~~~-~~~~~l~~~~-~d~~i~~~~~~~~~---------~~~~~~~~~~s~~~~~~~~~-~~~ 427 (615)
T 1pgu_A 366 -SMHQ-----DHSNLIVSLDN-SKAQEYSSIS-WDDTLKVNGITKHE---------FGSQPKVASANNDGFTAVLT-NDD 427 (615)
T ss_dssp -EEEC-----CCCSCEEEEEC-CSTTCCEEEE-TTTEEEETTEEEEE---------CSSCEEEEEECSSSEEEEEE-TTS
T ss_pred -hhcC-----cccCceEEEEE-CCCcEEEEEe-CCCCEEEEEcccCc---------ccCCceEEEEcCCCCEEEEe-CCC
Confidence 1111 23334456666 3344444333 34555555433211 122566777743 4444443 445
Q ss_pred eEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeE
Q psy14257 560 SVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFI 639 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l 639 (841)
.+...+..+++....+... ...++.+-. ..+|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~---------------~~~l 459 (615)
T 1pgu_A 428 DLLILQSFTGDIIKSVRLN---------------------------------SPGSAVSLS---------------QNYV 459 (615)
T ss_dssp EEEEEETTTCCEEEEEECS---------------------------------SCEEEEEEC---------------SSEE
T ss_pred ceEEEeccCCceeeecccC---------------------------------CCceEEEEc---------------CCEE
Confidence 5555554444433322200 000111100 1223
Q ss_pred Eeec--CCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccc
Q psy14257 640 IFSR--PREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTP 717 (841)
Q Consensus 640 ~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 717 (841)
+.+. ...|+..++....... .........+.+++|.|..+.|.... ..+.|+..++....
T Consensus 460 ~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw~~~~~~--------------- 521 (615)
T 1pgu_A 460 AVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSRE--------------- 521 (615)
T ss_dssp EEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE---------------
T ss_pred EEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcC-CCCeEEEeeCCCCc---------------
Confidence 3333 3445555554321100 00011224578999999888887776 57889998886544
Q ss_pred ccccccccCceEEEEeeC-CCCCcceeEEee----------cCCcEEEEecCCCCCeEEEEecCCc-ceEEEEcCCCCCC
Q psy14257 718 LSKRSSIVGGQIQLVVDA-GISHPSGLAIDW----------IAQNMFIAVSSPTQSKIVVCNLEGE-YQTTILSNESNDT 785 (841)
Q Consensus 718 ~~~~~~~~~~~~~~i~~~-~~~~p~glAvD~----------~~~~LYw~~~~~~~~~I~v~~l~g~-~~~~~~~~~~~~~ 785 (841)
....+.. ....+..|++.+ .++.|.... ..++|.+.++... .....+.+
T Consensus 522 -----------~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~----- 582 (615)
T 1pgu_A 522 -----------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS---LDTNIFIYSVKRPMKIIKALNA----- 582 (615)
T ss_dssp -----------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE---TTSCEEEEESSCTTCCEEETTS-----
T ss_pred -----------ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEc---CCCcEEEEECCCCceechhhhc-----
Confidence 1111222 456688899988 676666652 4678999999765 22222222
Q ss_pred CcCCCceEEEEeCCCCeEEEEe
Q psy14257 786 STLSKISSIAVWPVKGKMFWSN 807 (841)
Q Consensus 786 ~~l~~p~~iavd~~~g~lyw~d 807 (841)
-.....+|+..|... |.-..
T Consensus 583 -h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 583 -HKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp -STTCEEEEEEEETTE-EEEEE
T ss_pred -CccceEEEEEcCCCC-eEEec
Confidence 035788899988755 44433
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00012 Score=77.85 Aligned_cols=180 Identities=20% Similarity=0.217 Sum_probs=112.8
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccC-------CEEEEEeCC--CCeEEEEEecCCccEEEEeeee----ecC-
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQ-------DILYWCDSH--LNTVESVRVDGSERTVSFNLEV----LGS- 394 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~-------~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~----~~~- 394 (841)
.+..++++|+.+..+ +.++++++.+-+.- +.+|.++.. .++|..+++|....+ +..... +..
T Consensus 51 gL~Vydl~G~~l~~~---~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~ 126 (355)
T 3amr_A 51 GLVVYSLDGKMLHSY---NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATA 126 (355)
T ss_dssp EEEEEETTSCEEEEE---CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECC
T ss_pred CEEEEcCCCcEEEEc---cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCC
Confidence 455667777665554 23678888877632 267999998 999999988754332 221110 000
Q ss_pred -CCccccCCCCCCcc--ccccce--EEEEecCCCcEEEEcc----CC----ceEEEEecCCCCCceeEEEcCCCCeEEEE
Q psy14257 395 -DSRVGIPNCRPEDN--LWIGKN--LYWVESNLDQIEVAKL----SG----QFRRTLIAGDMESPRAIALDPRFGLLFWT 461 (841)
Q Consensus 395 -~~~~~i~~~~~~av--dw~~~~--LY~tD~~~~~I~v~~~----~G----~~~~~l~~~~l~~P~giavd~~~g~Ly~t 461 (841)
..+.|+ ++ +..++. +|+++.. +++..+.+ +| +.++.+-.. .+|.|+++|+..|+||++
T Consensus 127 ~~~pyGl------cly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 127 INEVYGF------TLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMN--SQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp CSSCCCE------EEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEEEEETTTTEEEEE
T ss_pred CCCeeEE------EEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCC--CCcceEEEcCCCCeEEEe
Confidence 111111 22 233353 6666665 77777655 23 223333322 589999999999999999
Q ss_pred ecCCCCCeEEEecCCCC---CcEEEEEecccCCCCC-CceeEEEeccC---CEEEEEeCCCCeEEEEEcCCC
Q psy14257 462 DWDSKAPRIERCSMSGE---HRSVIVRVDLLTSRGA-WPNGLTLDYQL---TRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 462 d~~~~~~~I~r~~ldG~---~~~~i~~~~~~~~~~~-~P~glalD~~~---~~LYw~d~~~~~I~~~~~dG~ 526 (841)
+.. ..|++++.+.. .++.+.... ...+. .|.||+|.+.. ++|++++.+++....++..+.
T Consensus 198 eEd---~GIw~~da~p~~~~~~~~v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 198 EED---EAIWKFSAEPDGGSNGTVIDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp ETT---TEEEEEECSTTSCSCCEEEEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred ccc---ceEEEEeCCcCCCCCceEEEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 976 45999996532 244443321 12343 79999997443 589999999999999988753
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.4e-07 Score=92.16 Aligned_cols=58 Identities=24% Similarity=0.486 Sum_probs=46.3
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCccccCCCC
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTD 75 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~ 75 (841)
+|||..|+|||..||.|||||. +|+..+|.+.+|+|. + + ...|. +.+++..|...|..
T Consensus 68 ~CIp~~~~CDG~~DC~DgSDE~--~C~~~~C~~~~F~c~------~-----~-~~~C~--~~~~~~~c~~~~s~ 125 (215)
T 2gtl_O 68 QCISKLFVCDGHNDCRNGEDEK--DCTLPTKAGDKFIGD------V-----C-FDHCT--KRRPEHMTLAFESS 125 (215)
T ss_dssp CEEEGGGTTSSSCCSSSCHHHH--CCCCSSCTTCEEEEE------E-----E-EESSC--SSCCSEEEEEEEEE
T ss_pred cCccccccCCCCCcCCCccccc--CCCCCCcCCCceeee------E-----C-CCccc--CCCCCCceeeeecc
Confidence 6999999999999999999998 899889999999993 1 1 23477 77777666555543
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-06 Score=63.25 Aligned_cols=37 Identities=38% Similarity=0.978 Sum_probs=33.8
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
+.|.+.+|+|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 4 ~~C~~~~F~C~~--g~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 4 PQCQPGEFACAN--SRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CBTTBTCEEETT--TEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CcCCCCceEcCC--CCeEehhhccCCCCCCCCCCCCCCC
Confidence 468889999998 8999999999999999999999765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00022 Score=79.31 Aligned_cols=232 Identities=9% Similarity=0.051 Sum_probs=130.4
Q ss_pred ccccccccccccEEEEeccccceeeecccccCCcceeEEEecCC--CeEEEEEecCCcccceEEEEeCCCCCccceEEee
Q psy14257 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVID--DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDW 306 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~--~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~ 306 (841)
..|+..++++.....+......+.++.|.+.... |+++.... ..|+..++.++. ... +...-.....+++.|
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~--la~~s~~~~~~~i~~~d~~tg~---~~~-l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSK--LAYVTFESGRSALVIQTLANGA---VRQ-VASFPRHNGAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSE--EEEEECTTSSCEEEEEETTTCC---EEE-EECCSSCEEEEEECT
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCE--EEEEEecCCCcEEEEEECCCCc---EEE-eecCCCcccCEEEcC
Confidence 5677777777666666554456778888876544 77765432 588888887654 222 222223455666766
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEE
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVS 386 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~ 386 (841)
.++.+++.-+ ......|+.+++.+...+.+.. .-.....+++.+++++|+++...
T Consensus 233 dg~~la~~~~-------~~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~l~~~s~~----------------- 287 (415)
T 2hqs_A 233 DGSKLAFALS-------KTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQ----------------- 287 (415)
T ss_dssp TSSEEEEEEC-------TTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECT-----------------
T ss_pred CCCEEEEEEe-------cCCCceEEEEECCCCCEEeCcC-CCCcccceEECCCCCEEEEEECC-----------------
Confidence 5543332111 0112245555554433322211 11222334444443333333211
Q ss_pred EeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCC
Q psy14257 387 FNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSK 466 (841)
Q Consensus 387 ~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~ 466 (841)
.+..+|++.++++...+.+.. .......++++|...+|+++.....
T Consensus 288 ---------------------------------~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~g 333 (415)
T 2hqs_A 288 ---------------------------------AGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGG 333 (415)
T ss_dssp ---------------------------------TSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ---------------------------------CCCcEEEEEECCCCCEEEEec-CCCcccCeEECCCCCEEEEEECcCC
Confidence 112245555555443332221 2234567899999888888875422
Q ss_pred CCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC--eEEEEEcCCCeeEEEE
Q psy14257 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD--SIHTVTYDGKDHHVVL 532 (841)
Q Consensus 467 ~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~--~I~~~~~dG~~~~~i~ 532 (841)
...|+..++++...+.+.. . .....+++.+.+..|+++....+ .|+.++++|...+.+.
T Consensus 334 ~~~i~~~d~~~~~~~~l~~------~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 334 QQHIAKQDLATGGVQVLSS------T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp CEEEEEEETTTCCEEECCC------S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred ceEEEEEECCCCCEEEecC------C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 4689999998766544322 2 26788999988888888765444 7899999988766553
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-06 Score=68.24 Aligned_cols=38 Identities=26% Similarity=0.830 Sum_probs=35.2
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
|..+||+|+|+|+..+.++|+|.|+.||.|.+|+++|.
T Consensus 2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~ 39 (59)
T 2wph_E 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 39 (59)
T ss_dssp TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEE
T ss_pred CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCccc
Confidence 77789999999999886679999999999999999998
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.5e-07 Score=66.01 Aligned_cols=39 Identities=33% Similarity=0.738 Sum_probs=34.6
Q ss_pred CCCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 92 APACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 92 ~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
+..|.+.+|.|.++ ..||+.+++|||..+|.+|+||..|
T Consensus 4 ~~~C~~~~F~C~~g-~~CI~~~~~CDG~~DC~DgSDE~~C 42 (48)
T 2i1p_A 4 VLNCTSAQFKCADG-SSCINSRYRCDGVYDCRDNSDEAGC 42 (48)
T ss_dssp CCCCCSSSEECSSS-SCEECGGGSSSSSCCSSSSHHHHSS
T ss_pred CCCCCCCeeECCCC-CEeCCHhhcCCCCCCCCCCcccccC
Confidence 45688899999983 4999999999999999999999876
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.9e-07 Score=87.38 Aligned_cols=68 Identities=22% Similarity=0.510 Sum_probs=37.6
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc-----ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCcccccc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC-----DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLH 173 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C-----~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~ 173 (841)
+|.++ +.|++. +|.| .|+.||.+..| ++|...++.|.+.|.++.++|.|.|++||.|..+++.|.++.
T Consensus 49 pC~ng-g~C~n~~g~y~C----~C~~Gf~G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~ 123 (195)
T 1nfu_B 49 PCQNQ-GKCKDGLGEYTC----TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123 (195)
T ss_dssp -------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred CCCCC-CEeECCCCCeeE----eCCCCceeccccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccCC
Confidence 57776 788775 7889 99999988888 468876678999999999999999999999999999998864
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.001 Score=79.16 Aligned_cols=281 Identities=11% Similarity=0.054 Sum_probs=157.5
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
.+.++.|... +. |.++ .++.|+..++.++. ...+ ...-..+..+++.|.++.+.+ +. ++.
T Consensus 83 ~v~~~~~spd-~~--~~~~--~~~~i~~~d~~~~~---~~~l-~~~~~~~~~~~~SpdG~~la~--~~---------~~~ 142 (706)
T 2z3z_A 83 PSFRTLDAGR-GL--VVLF--TQGGLVGFDMLARK---VTYL-FDTNEETASLDFSPVGDRVAY--VR---------NHN 142 (706)
T ss_dssp CCEEEEETTT-TE--EEEE--ETTEEEEEETTTTE---EEEE-ECCTTCCTTCEECTTSSEEEE--EE---------TTE
T ss_pred CceeEEECCC-Ce--EEEE--ECCEEEEEECCCCc---eEEc-cCCcccccCCcCCCCCCEEEE--EE---------CCe
Confidence 3567777765 43 4444 23788888877653 2222 222335667788776644433 21 246
Q ss_pred EEEEccCC-----CccccccccC--------------cCCCceEEEEccCCEEEEEeC----------------------
Q psy14257 330 IEKAGMHG-----ENRSPLVTKN--------------IQWPSSLVIDYNQDILYWCDS---------------------- 368 (841)
Q Consensus 330 I~~~~~dG-----~~~~~l~~~~--------------~~~P~glavD~~~~~lYwaD~---------------------- 368 (841)
|+..++++ ...+.+.... +..+.++++.+++++|+++..
T Consensus 143 i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 222 (706)
T 2z3z_A 143 LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP 222 (706)
T ss_dssp EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred EEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence 77777765 4333332221 233689999999999998852
Q ss_pred ----------CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc--ccceEEEEecCC----CcEEEEccCC
Q psy14257 369 ----------HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW--IGKNLYWVESNL----DQIEVAKLSG 432 (841)
Q Consensus 369 ----------~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw--~~~~LY~tD~~~----~~I~v~~~~G 432 (841)
....|+.+++++...+.+.... .... ....+.| .++.|+++.... ..|.+.++++
T Consensus 223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~-------~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE--PKEK-------FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp ECCCBTTSCCCEEEEEEEETTTTEEEECCCCS--CTTC-------EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred eeCCCCCCCCCeeEEEEEECCCCceEeeccCC--CCce-------eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence 2346777777665543322100 0000 0012223 335577754322 3788888876
Q ss_pred c-eEEEEecCC----CCCceeEEEcC--CCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCcee-EEEecc
Q psy14257 433 Q-FRRTLIAGD----MESPRAIALDP--RFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNG-LTLDYQ 504 (841)
Q Consensus 433 ~-~~~~l~~~~----l~~P~giavd~--~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~g-lalD~~ 504 (841)
. ..+.+.... ......+++.| .+.+||.++.. ...+|+..+++|...+.+.. .-..... +++++.
T Consensus 294 g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~-g~~~l~~~~~~~~~~~~l~~------~~~~v~~~~~~spd 366 (706)
T 2z3z_A 294 GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD-GWNHLYLYDTTGRLIRQVTK------GEWEVTNFAGFDPK 366 (706)
T ss_dssp CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT-SSCEEEEEETTSCEEEECCC------SSSCEEEEEEECTT
T ss_pred CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC-CccEEEEEECCCCEEEecCC------CCeEEEeeeEEcCC
Confidence 5 555444221 11236789998 76666655543 35789999887765544422 1112234 789988
Q ss_pred CCEEEEEeCCCC----eEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCC---CCeEEEEeccCCc
Q psy14257 505 LTRIYWIDAKSD----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWR---TNSVIRANKWNGS 570 (841)
Q Consensus 505 ~~~LYw~d~~~~----~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~---~~~i~~~~~~~g~ 570 (841)
+++||++....+ .|+.+++++...+.+... .....+++. +.+|.++-.. ...|+.++..+++
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGKTKDLTPE----SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCCCEESCCS----SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCCceeccCC----CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 889998876654 899999887665544321 224556663 3345444221 2457777765555
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.015 Score=61.18 Aligned_cols=275 Identities=9% Similarity=-0.018 Sum_probs=154.4
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC-cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEE
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH-RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~-~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~ 520 (841)
.-.....++++|...+|+... .+.|...+++... ...+.... ....-.....+++.+.+..|+.+. ..+.|..
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~----dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~ 123 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG----KGCVKVWDISHPGNKSPVSQLD-CLNRDNYIRSCKLLPDGCTLIVGG-EASTLSI 123 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC----BSEEEEEETTSTTCCSCSEEEE-CSCTTSBEEEEEECTTSSEEEEEE-SSSEEEE
T ss_pred CCCceEEEEEecCCcEEEEcC----CCeEEEEECCCCCceeeeeccc-ccCCCCcEEEEEEcCCCCEEEEEc-CCCcEEE
Confidence 335678999999877776655 2566666654322 11111100 001234567899998766666554 4678999
Q ss_pred EEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCC
Q psy14257 521 VTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNN 599 (841)
Q Consensus 521 ~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~n 599 (841)
.+++...................+++. ++.++++-...+.|...+..+++....+....
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-------------------- 183 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-------------------- 183 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--------------------
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--------------------
Confidence 998876532221111112334667774 34444444455677777765554333222100
Q ss_pred CCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEEEecCCCCccccceeecCCCCCceEEEEec
Q psy14257 600 GNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDA 678 (841)
Q Consensus 600 g~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~ 678 (841)
+... ..+..|+ ..+|+.+ ....|+..++..... ... ......+..++|.+
T Consensus 184 ~~i~----------~~~~~~~---------------~~~l~~~~~dg~i~~~d~~~~~~--~~~--~~~~~~v~~~~~s~ 234 (337)
T 1gxr_A 184 DGAS----------CIDISND---------------GTKLWTGGLDNTVRSWDLREGRQ--LQQ--HDFTSQIFSLGYCP 234 (337)
T ss_dssp SCEE----------EEEECTT---------------SSEEEEEETTSEEEEEETTTTEE--EEE--EECSSCEEEEEECT
T ss_pred CceE----------EEEECCC---------------CCEEEEEecCCcEEEEECCCCce--Eee--ecCCCceEEEEECC
Confidence 0000 0111111 1223333 344566666543321 111 12224578899999
Q ss_pred CCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecC
Q psy14257 679 ANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSS 758 (841)
Q Consensus 679 ~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~ 758 (841)
..+.|+... ..+.|+..++.... ... +......+..|++.+.++.|+..
T Consensus 235 ~~~~l~~~~-~~~~i~~~~~~~~~--------------------------~~~-~~~~~~~v~~~~~~~~~~~l~~~--- 283 (337)
T 1gxr_A 235 TGEWLAVGM-ESSNVEVLHVNKPD--------------------------KYQ-LHLHESCVLSLKFAYCGKWFVST--- 283 (337)
T ss_dssp TSSEEEEEE-TTSCEEEEETTSSC--------------------------EEE-ECCCSSCEEEEEECTTSSEEEEE---
T ss_pred CCCEEEEEc-CCCcEEEEECCCCC--------------------------eEE-EcCCccceeEEEECCCCCEEEEe---
Confidence 888888776 57889988887654 222 23345678899999888777666
Q ss_pred CCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecC
Q psy14257 759 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT 809 (841)
Q Consensus 759 ~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~ 809 (841)
...+.|.+.++........... -..+.++++.|...+|+-....
T Consensus 284 ~~dg~i~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 284 GKDNLLNAWRTPYGASIFQSKE-------SSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC-------SSCEEEEEECTTSCEEEEEETT
T ss_pred cCCCcEEEEECCCCeEEEEecC-------CCcEEEEEECCCCCEEEEecCC
Confidence 2468899999876654433333 3678899999987777665543
|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.7e-07 Score=66.01 Aligned_cols=37 Identities=35% Similarity=0.899 Sum_probs=34.1
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+.+|.|.+ +.||+.+++|||..||.||+||..|
T Consensus 5 ~~C~~~~F~C~n--G~CIp~~~~CDG~~DC~DgSDE~~~ 41 (52)
T 2m0p_A 5 ASCLDTQYTCDN--HQCISKNWVCDTDNDCGDGSDEKNC 41 (52)
T ss_dssp CSSCSSEEECTT--CCEEETTSTTSSSCSSSSCHHHHSC
T ss_pred CCCCCCceECCC--CCEEecCccCCCCCCCCCCCccccc
Confidence 568889999998 8999999999999999999999766
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-06 Score=60.48 Aligned_cols=37 Identities=46% Similarity=0.937 Sum_probs=32.4
Q ss_pred CCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 95 C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
|++.+|.|.+.++.||+.+++|||..+|.+|+||..|
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C 37 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccC
Confidence 5678899987227999999999999999999999776
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-06 Score=62.46 Aligned_cols=38 Identities=34% Similarity=0.785 Sum_probs=34.3
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+++|.|.+. +.||+..++|||..+|.+|+||..|
T Consensus 5 ~~C~~~~f~C~~~-g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 5 VKCSLGYFPCGNI-TKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp CSCCTTEEECSSS-SCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred CCCCCCeeECCCC-CeEcCHhhccCCCCCCCCCcccCCC
Confidence 4588889999985 8999999999999999999999766
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-06 Score=66.50 Aligned_cols=38 Identities=26% Similarity=0.684 Sum_probs=35.0
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
|..+||+|+|+|+..+.++|+|.|+.||.|..|+++|.
T Consensus 2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~ 39 (53)
T 2bz6_L 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEE
T ss_pred CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCccc
Confidence 77788999999998886579999999999999999998
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0015 Score=78.04 Aligned_cols=327 Identities=8% Similarity=0.023 Sum_probs=167.4
Q ss_pred CCceeEEEcCCCCeEEEEecCCC---CCeEEEecCCCCCcEEEEEecccC----------CCC---------CCceeEEE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSK---APRIERCSMSGEHRSVIVRVDLLT----------SRG---------AWPNGLTL 501 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~---~~~I~r~~ldG~~~~~i~~~~~~~----------~~~---------~~P~glal 501 (841)
..+..+++.|++.+|+++..... ...|+..++++.....+....... ... .....+++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 45789999999888888875211 137999999876655554311000 000 12467899
Q ss_pred eccCCEEEEEeCCCCeEEEEEcCCC---eeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 502 DYQLTRIYWIDAKSDSIHTVTYDGK---DHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 502 D~~~~~LYw~d~~~~~I~~~~~dG~---~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
.+++++|+++.. +.|+..++++. ..+.+... -..+..+++ ++.+|+++.. +.|+.++..+|+...+..
T Consensus 117 SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~---~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 117 SPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHG---EGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp CTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCS---SSCEEEEEECTTSSEEEEEET--TEEEEEETTTTEEEECCC
T ss_pred CCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccC---CcccccccCCCCCCEEEEEeC--CcEEEEecCCCCEEEecc
Confidence 998888988875 89999999887 54443322 123456666 3445666642 467777765554332211
Q ss_pred cccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeec---CCCccc-------ccC---ceeEEeec
Q psy14257 577 RTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMS---DNKTCQ-------VAD---SQFIIFSR 643 (841)
Q Consensus 577 ~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~---d~~tC~-------~~~---~~~l~~~~ 643 (841)
.. ..+. +...+.-...-.. +.-.. ...-|+|-.|.. |+..-. .+. ...+.+..
T Consensus 190 ~~-~~~~-~~g~~~~v~~~~~--~~~~~----------~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 190 DG-STTI-GNGIAEFVADEEM--DRHTG----------YWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp CC-CSSE-EESCCCHHHHHHS--CCCCS----------EEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred CC-ccce-eccccceeeeecc--ccccc----------eEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 10 0000 0000000000000 00000 011122211110 000000 000 00000000
Q ss_pred ------CCeEEEEecCC-CCccccceeec--CCCCCceEEEEecCCCEEEEEEC----CCCeEEEEEcccCceeeeeeee
Q psy14257 644 ------PREIRGVDLEH-PYYHTIPTISI--PQVFSPNNLNFDAANKKIYWTDQ----EYNEVKRSSIVGGQIQLVVDAV 710 (841)
Q Consensus 644 ------~~~i~~~~l~~-~~~~~~~~~~~--~~~~~~~~v~~d~~~~~iyw~d~----~~~~I~~~~~~g~~~~~~~~~~ 710 (841)
...|+.++++. .... .+.. .....+..++| |..+.|+++.. ....|+.+++.+..
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-------- 323 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQ---WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-------- 323 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCE---EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC--------
T ss_pred CCCCCCeeEEEEEECCCCCceE---EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc--------
Confidence 01455555544 3211 1111 12234678899 99999998753 23568888776654
Q ss_pred eeeecccccccccccCceEEEEeeCCC----CCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCC
Q psy14257 711 FEFYLTPLSKRSSIVGGQIQLVVDAGI----SHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTS 786 (841)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~ 786 (841)
...++.... ....++++.+.++ ++++.+..+..+|..++++|. .+.+...
T Consensus 324 ------------------~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~------ 377 (741)
T 2ecf_A 324 ------------------QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHG------ 377 (741)
T ss_dssp ------------------EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCS------
T ss_pred ------------------eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeec------
Confidence 222222111 1346889988887 555533334456777777777 4444433
Q ss_pred cCCCceEE-EEeCCCCeEEEEecCCC--cceEEEEecCCCceEEEec
Q psy14257 787 TLSKISSI-AVWPVKGKMFWSNVTKQ--VVTIEMAFMDGTKRETVVS 830 (841)
Q Consensus 787 ~l~~p~~i-avd~~~g~lyw~d~~~~--~~~I~~~~~dG~~~~~l~~ 830 (841)
-.....+ +++|...+||++-.... ..+|.+..++|...+.|..
T Consensus 378 -~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 378 -NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK 423 (741)
T ss_dssp -SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred -ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence 2345566 58999888888765432 2468888888876665543
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-06 Score=85.14 Aligned_cols=41 Identities=41% Similarity=0.858 Sum_probs=35.9
Q ss_pred CCCCCCCCCCcccCC-CCeEecCCCCCCCCCCcccCCCCCCC--cc
Q psy14257 27 CQDRKCDESHFTCNE-TLRCIPLAWACDGQPDCGLNDTSDED--HC 69 (841)
Q Consensus 27 C~~~~C~~~~~~C~~-~~~Ci~~~~~Cdg~~dC~~~d~sde~--~C 69 (841)
+....|.+.+|+|.+ ++.|||..|+|||..||. |||||. .|
T Consensus 49 ~~~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~--DgSDE~~~~C 92 (217)
T 2gtl_M 49 LEEHHCDEHESECRGDVPECIHDLLFCDGEKDCR--DGSDEDPETC 92 (217)
T ss_dssp TSCCCCCTTEEECSSSSCCEEEGGGTTSSSCCSS--SSTTTSHHHH
T ss_pred CCCCCCCCCceecCCCCCcEechhhccCCCCCCC--CCCccccCcC
Confidence 445689999999973 699999999999999999 999997 56
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-06 Score=81.36 Aligned_cols=69 Identities=20% Similarity=0.489 Sum_probs=59.1
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc----cc---ccccCCCCCCCcccCCC-CcEEecCCCceecCCCCccc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC----DE---KQCLRSDCHHDCYNTPE-GFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C----~e---C~~~~~~C~~~C~~~~g-~~~C~C~~Gy~l~~d~~~C~ 170 (841)
+|.++ +.|++. ++.| .|+.||.+..| ++ |...++.|.+.|.++.+ +|+|.|++||.+..+++.|.
T Consensus 54 pC~n~-g~C~~~~g~y~C----~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~ 128 (142)
T 2c4f_L 54 PCQNG-GSCKDQLQSYIC----FCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128 (142)
T ss_dssp CCCTT-CEEEEETTEEEE----ECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEE
T ss_pred CcCCC-CEEeCCCCCEEe----eCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCC
Confidence 58776 889876 7889 99999987778 23 55567789999999999 99999999999999999999
Q ss_pred cccc
Q psy14257 171 YLHP 174 (841)
Q Consensus 171 ~~~e 174 (841)
++++
T Consensus 129 ~~~e 132 (142)
T 2c4f_L 129 PTVE 132 (142)
T ss_dssp ESSS
T ss_pred CCCc
Confidence 8876
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.4e-06 Score=72.01 Aligned_cols=77 Identities=16% Similarity=0.468 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCCCCCccc--ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccc--cccccCCCCCccC--cee
Q psy14257 113 ALVCDGEPACFNGEDEMFC--DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS--YLHPCEAWGTCSQ--DCE 186 (841)
Q Consensus 113 ~~~Cdg~~~C~~g~de~~C--~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~--~~~eC~~~~~Cs~--~C~ 186 (841)
+|.| .|.+|+.+..| ++|... .|.+..++|+|.|++||. .|+ ++++|.. .+|.+ .|.
T Consensus 1 sy~C----~C~~g~~g~~c~~~~c~~~------pC~n~~~~y~C~C~~G~~------~C~~~~~~~C~~-~pC~ngg~C~ 63 (91)
T 1tpg_A 1 SYQV----ICRDEKTQMIYQQHQSWLR------PVLRSNRVEYCWCNSGRA------QCHSVPVKSCSE-PRCFNGGTCQ 63 (91)
T ss_dssp CCCC----CCBCSSSCCBCCSSCEEEE------ECSSSSCEEEEECSSSCC------BCCEECEEECSS-CCSCTTCEEE
T ss_pred Ceee----ECCCCCcCCeECCCcccCC------ccccCCCCcEeECCCCCc------ccccCcCCcccC-CCCCCCCEee
Confidence 4667 89999987667 455422 478889999999999995 685 6888953 56754 788
Q ss_pred ecCCC--CceEEeecCCeeecCCCCceE
Q psy14257 187 PSVSN--NSYKCTCHAGYELEPDMFTCK 212 (841)
Q Consensus 187 ~~~~~--g~~~C~C~~G~~l~~d~~~C~ 212 (841)
+. . ++|+|.|++||. +..|.
T Consensus 64 ~~--~~~~~~~C~C~~G~~----G~~Ce 85 (91)
T 1tpg_A 64 QA--LYFSDFVCQCPEGFA----GKSCE 85 (91)
T ss_dssp EE--SSSSCEEEECCTTCB----SSSCC
T ss_pred cC--CCCCCeEeECCCCCc----CCcCC
Confidence 87 6 899999999996 45664
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-06 Score=63.61 Aligned_cols=38 Identities=39% Similarity=1.029 Sum_probs=33.2
Q ss_pred CCCCCCCcccCC----CCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQD----VLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~----~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+.+|.|.+ . +.||+.+++|||..||.+|+||..|
T Consensus 5 ~~C~~~~F~C~~~~~~~-g~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 5 GSCPPGQFRCSEPPGAH-GECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp -CCSTTEECCSSCTTSC-CCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCCCCceEcCCCCCCC-CcCCCccccCCCcCCCCCCcccCCC
Confidence 357888999983 3 8999999999999999999999876
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-06 Score=81.05 Aligned_cols=69 Identities=23% Similarity=0.539 Sum_probs=37.5
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc-----ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCcccccc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC-----DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLH 173 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C-----~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~ 173 (841)
+|.++ +.|++. ++.| .|+.||.+..| ++|...++.|.+.|.++.++|+|.|++||.+..+++.|.+++
T Consensus 49 pC~n~-g~C~~~~~~y~C----~C~~G~~G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~~ 123 (134)
T 2vh0_B 49 PCQNQ-GKCKDGLGEYTC----TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123 (134)
T ss_dssp -------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred CCCCc-CCcccCCCCEEe----eCCCCccCCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcCC
Confidence 47766 788765 7889 99999987778 458766678999999999999999999999999999998765
Q ss_pred c
Q psy14257 174 P 174 (841)
Q Consensus 174 e 174 (841)
+
T Consensus 124 ~ 124 (134)
T 2vh0_B 124 P 124 (134)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-06 Score=77.51 Aligned_cols=75 Identities=29% Similarity=0.746 Sum_probs=57.3
Q ss_pred ccccccCCCCCCCcccC-CCCcEEecCCCceecCC-CCccccccccCCCCCccCceeecCCCCceEEeecCCeeecCCCC
Q psy14257 132 DEKQCLRSDCHHDCYNT-PEGFMCVCPRDMYLQPD-LITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMF 209 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~-~g~~~C~C~~Gy~l~~d-~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~ 209 (841)
+||. +.+|.+.|.++ .++|+|.|++||.+... ...|.+ +| ..+.|.+.|.+ .++|+|.|++||.+.. +.
T Consensus 5 deC~--~~pC~~~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~--~C-~~~~C~~~C~~---~~~y~C~C~~Gy~~~~-g~ 75 (118)
T 1dx5_I 5 DPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQM--FC-NQTACPADCDP---NTQASCECPEGYILDD-GF 75 (118)
T ss_dssp CGGG--GCCCSSEEEECSSSCEEEECCTTEEEETTEEEEEEE--CC-CSSEEECEECT---TSTTCEECCTTEEEET-TT
T ss_pred ccCC--CCCCCCCCCCCCCCCEEeECCCCccccCCCCCcccc--cc-CCCCCCCcccC---CCCeEeECCCCccCCC-CC
Confidence 4664 45898899999 99999999999997532 223443 34 35678788877 4789999999999875 78
Q ss_pred ceEeCC
Q psy14257 210 TCKSKS 215 (841)
Q Consensus 210 ~C~~~~ 215 (841)
.|.+++
T Consensus 76 ~C~did 81 (118)
T 1dx5_I 76 ICTDID 81 (118)
T ss_dssp EEEECC
T ss_pred cccccc
Confidence 898763
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-06 Score=62.49 Aligned_cols=37 Identities=35% Similarity=0.934 Sum_probs=32.7
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+.+|.|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 6 ~~C~~~~f~C~~--g~CI~~~~~CDg~~DC~DgSDE~~C 42 (44)
T 3a7q_B 6 KECEKDQFQCRN--ERCIPSVWRCDEDDDCLDHSDEDDC 42 (44)
T ss_dssp --CCTTEEECTT--SCEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred CCCCCCceEcCC--CCEeChhhccCCCCCCCCCccccCC
Confidence 457888999998 8999999999999999999999766
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.6e-06 Score=89.40 Aligned_cols=70 Identities=24% Similarity=0.587 Sum_probs=60.0
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc----cccccc-CCCCCCCcccCCCCcEEecCCCceecCCCCcccccc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC----DEKQCL-RSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLH 173 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C----~eC~~~-~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~ 173 (841)
+|.++ +.|++. ++.| .|+.||.+..| +||... +.+|.+.|.|+.++|.|.|++||.+..+++.|.+.+
T Consensus 12 pC~~~-g~C~~~~~~~~C----~C~~g~~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~ 86 (317)
T 3h5c_B 12 PCLHN-GSCQDSIWGYTC----TCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHD 86 (317)
T ss_dssp CCTTT-CCCCCCSSSCCC----CCSSSCCSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEECS
T ss_pred CCCCC-CEeECCCCCeEE----ECCCCCcCCccccCcccCCCCCCCCCcCccccCCCeeEEecccccccccccccccccc
Confidence 47666 777765 7889 99999998888 689752 368999999999999999999999988999999998
Q ss_pred cc
Q psy14257 174 PC 175 (841)
Q Consensus 174 eC 175 (841)
+|
T Consensus 87 ~c 88 (317)
T 3h5c_B 87 QC 88 (317)
T ss_dssp SC
T ss_pred cc
Confidence 87
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00045 Score=71.37 Aligned_cols=256 Identities=12% Similarity=0.039 Sum_probs=144.8
Q ss_pred ccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecC-CcccceEEEEeCC-CCCccceEEee
Q psy14257 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIG-NSLSNIDVVVQTG-LSTAEGLAVDW 306 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~-~~~~~~~~~~~~~-l~~p~giavD~ 306 (841)
..|+..++.......+......+.++.|...... |++.. .+.|+..++.+ +. ...+.... ...+..+++.+
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~--l~~~~--~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKY--LLLNS--EGLLYRLSLAGDPS---PEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCEEEEECTTSSE--EEEEE--TTEEEEEESSSCCS---CEECCCTTCCCBCSCCEECT
T ss_pred eeEEEEeCCCCceeeeccCCcceEeeEECCCCCE--EEEEc--CCeEEEEeCCCCCC---ceEeccccccccccceEECC
Confidence 3445555555555554444445667788776433 66653 67898888876 54 22222111 23456688877
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCC--eEEEEEecCCccE
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN--TVESVRVDGSERT 384 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~--~I~~~~ldG~~~~ 384 (841)
.++ +++++... .....+|+..+.++...+.+... .....+++.++++.|+++....+ .|+.+++++...+
T Consensus 95 dg~--~l~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 95 DGA--LYAISDKV----EFGKSAIYLLPSTGGTPRLMTKN--LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp TSS--EEEEEECT----TTSSCEEEEEETTCCCCEECCSS--SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCC--EEEEEEeC----CCCcceEEEEECCCCceEEeecC--CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence 553 33333321 11245888888877655544332 23677889999999987765555 5566666665544
Q ss_pred EEEeeeeecCCCccccCCCCCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEe
Q psy14257 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTD 462 (841)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td 462 (841)
.+.... ..+ ...+++..+..|+++.. ...+|+.+++++.....+.. .......++++|...+|+++.
T Consensus 167 ~~~~~~-----~~~-----~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 167 RLTHGE-----GRN-----DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp ECCCSS-----SCE-----EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEEEEE
T ss_pred EcccCC-----Ccc-----ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEEEEE
Confidence 332110 000 00112223355777653 34456666666665554432 224566789999888887776
Q ss_pred cCC--------CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 463 WDS--------KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 463 ~~~--------~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
... ....|+..++++.....+.... ..-.....+++.+.+.+|+++..
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF---GGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE---ESTTTSCSCCBCTTSSEEEEEEE
T ss_pred cCCCCCcccccCceEEEEEecCCCCceeeeccC---CCCcccccceECCCCCEEEEEEe
Confidence 431 1256999999877665554310 11234566778877777877654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.01 Score=70.40 Aligned_cols=284 Identities=11% Similarity=0.055 Sum_probs=153.1
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-----CCcEEEEEec
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-----EHRSVIVRVD 487 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-----~~~~~i~~~~ 487 (841)
+.|.++. .+.|.+.++++.....+.. .-..+..++++|++.+|+++. ...|+..++++ .....+....
T Consensus 93 ~~~~~~~--~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~SpdG~~la~~~----~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 93 GLVVLFT--QGGLVGFDMLARKVTYLFD-TNEETASLDFSPVGDRVAYVR----NHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp TEEEEEE--TTEEEEEETTTTEEEEEEC-CTTCCTTCEECTTSSEEEEEE----TTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred CeEEEEE--CCEEEEEECCCCceEEccC-CcccccCCcCCCCCCEEEEEE----CCeEEEEecCcccccCCCcEEeccCC
Confidence 5555553 3789999998766555443 234577889999988888864 46888888876 4443332210
Q ss_pred cc---------CCCCCCceeEEEeccCCEEEEEeC--------------------------------CCCeEEEEEcCCC
Q psy14257 488 LL---------TSRGAWPNGLTLDYQLTRIYWIDA--------------------------------KSDSIHTVTYDGK 526 (841)
Q Consensus 488 ~~---------~~~~~~P~glalD~~~~~LYw~d~--------------------------------~~~~I~~~~~dG~ 526 (841)
.. ...+..+.++++.+++++|+++.. ....|..+++++.
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 00 001123588999998888888751 2357888888877
Q ss_pred eeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCC----CeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCC
Q psy14257 527 DHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRT----NSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNG 600 (841)
Q Consensus 527 ~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~----~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng 600 (841)
....+......-..+..+++. +.+|+++.... ..|+.++..+|+....+..... +...++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--------~~~~~~------ 311 (706)
T 2z3z_A 246 KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--------KHYVEP------ 311 (706)
T ss_dssp EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--------SSCCCC------
T ss_pred ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--------CCeECc------
Confidence 654443221111234566663 34577754322 3677777766633333221100 000000
Q ss_pred CCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecC---CeEEEEecCCCCccccceeecCCCCCceE-EEE
Q psy14257 601 NCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRP---REIRGVDLEHPYYHTIPTISIPQVFSPNN-LNF 676 (841)
Q Consensus 601 ~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~---~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-v~~ 676 (841)
.. .....+. .+..+|+.+.. ..|+.++++.... ..+.. ....+.. ++|
T Consensus 312 -~~-----------------~~~~sp~------~dg~~l~~~~~~g~~~l~~~~~~~~~~---~~l~~-~~~~v~~~~~~ 363 (706)
T 2z3z_A 312 -LH-----------------PLTFLPG------SNNQFIWQSRRDGWNHLYLYDTTGRLI---RQVTK-GEWEVTNFAGF 363 (706)
T ss_dssp -CS-----------------CCEECTT------CSSEEEEEECTTSSCEEEEEETTSCEE---EECCC-SSSCEEEEEEE
T ss_pred -cC-----------------CceeecC------CCCEEEEEEccCCccEEEEEECCCCEE---EecCC-CCeEEEeeeEE
Confidence 00 0011110 01123333322 1344444332211 11111 1122334 789
Q ss_pred ecCCCEEEEEECCCC----eEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcE
Q psy14257 677 DAANKKIYWTDQEYN----EVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNM 752 (841)
Q Consensus 677 d~~~~~iyw~d~~~~----~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~L 752 (841)
++..+.||++....+ .|+++++++.. .+.+. ....+..+++.+.++.|
T Consensus 364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--------------------------~~~l~--~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 364 DPKGTRLYFESTEASPLERHFYCIDIKGGK--------------------------TKDLT--PESGMHRTQLSPDGSAI 415 (706)
T ss_dssp CTTSSEEEEEESSSCTTCBEEEEEETTCCC--------------------------CEESC--CSSSEEEEEECTTSSEE
T ss_pred cCCCCEEEEEecCCCCceEEEEEEEcCCCC--------------------------ceecc--CCCceEEEEECCCCCEE
Confidence 999999999986654 78888887654 12221 23346678888888877
Q ss_pred EEEecCC-CCCeEEEEecCCcc
Q psy14257 753 FIAVSSP-TQSKIVVCNLEGEY 773 (841)
Q Consensus 753 Yw~~~~~-~~~~I~v~~l~g~~ 773 (841)
..+.++. ....|.+.++++..
T Consensus 416 ~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 416 IDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEECSSCSCEEEEEESSSCE
T ss_pred EEEecCCCCCcEEEEEECCCCe
Confidence 7663222 23569999887765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.066 Score=64.26 Aligned_cols=147 Identities=9% Similarity=0.011 Sum_probs=84.7
Q ss_pred cCCCcEEEEccCCc-eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCcee
Q psy14257 420 SNLDQIEVAKLSGQ-FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNG 498 (841)
Q Consensus 420 ~~~~~I~v~~~~G~-~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~g 498 (841)
...+.|.+.+++.. .....+...-.....++++|.++.++++-.. .+.|...++........... ........
T Consensus 116 ~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~----~~~~~v~~ 189 (814)
T 3mkq_A 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTT----GQERGVNY 189 (814)
T ss_dssp ETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET--TSEEEEEETTCSSCSEEEEC----CCTTCCCE
T ss_pred cCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcceeEEec----CCCCCEEE
Confidence 34466777776643 3333333344567899999855655555444 56788888764433333321 22255677
Q ss_pred EEEec--cCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 499 LTLDY--QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 499 lalD~--~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
+++.+ .+..|+ +-...+.|...++........+..+ ......+++. ++.++++-...+.|...+..+++....+
T Consensus 190 ~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 190 VDYYPLPDKPYMI-TASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp EEECCSTTCCEEE-EECTTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EEEEECCCCCEEE-EEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 88876 444444 5455678999988765443333322 2334566664 3455555555677777776666544443
|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=92.74 Aligned_cols=81 Identities=21% Similarity=0.592 Sum_probs=63.6
Q ss_pred ccccccCCCCCC--CcccCCCC-cEE-ecCCCceecCCCCccccccccC-CCCCccC-----ceeecCCCCceEEe-ecC
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEG-FMC-VCPRDMYLQPDLITCSYLHPCE-AWGTCSQ-----DCEPSVSNNSYKCT-CHA 200 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~-~~C-~C~~Gy~l~~d~~~C~~~~eC~-~~~~Cs~-----~C~~~~~~g~~~C~-C~~ 200 (841)
+||. ..+|.+ .|.++.++ |+| .|++||. .+++.|++++||. .++.|.+ .|.++ .++|+|. |++
T Consensus 4 DeC~--~nPC~~gg~C~n~~~Gsy~C~~C~~Gyt--Gdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt--~gsY~C~~C~~ 77 (634)
T 1yo8_A 4 DGCL--SNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVPDICFSTSKVPRCVNT--QPGFHCLPCPP 77 (634)
T ss_dssp CGGG--GCCSCTTCCEEECTTSCEEECCCCTTBC--SCSSSCCBCCTTTTSCCCSCCCSSSCCEEEC--SSSEEECCCCT
T ss_pred cccC--CCCCCCCCEEecCCCCCeECCcCCCccC--CCCCCccccccccCCCCcccCCccccceeec--cCceecccCCC
Confidence 4665 347864 89999865 999 9999997 4678999999996 3456965 79999 9999998 999
Q ss_pred CeeecC-----------CCCceEeCCCCC
Q psy14257 201 GYELEP-----------DMFTCKSKSKND 218 (841)
Q Consensus 201 G~~l~~-----------d~~~C~~~~~~~ 218 (841)
||.... +++.|..+++..
T Consensus 78 Gy~G~~c~g~g~~~~~~dg~~C~dideC~ 106 (634)
T 1yo8_A 78 RYRGNQPVGVGLEAAKTEKQVCEPENPCK 106 (634)
T ss_dssp TEEECCCEESSSHHHHSCCCCEEECCTTT
T ss_pred CcccCccccccccccccCCCccccccccc
Confidence 998653 456688775443
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.4e-06 Score=80.00 Aligned_cols=71 Identities=23% Similarity=0.527 Sum_probs=57.8
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCc------------cc---ccccccCCCCC--CCcccCCCCcEEecCCCce
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEM------------FC---DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMY 161 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~------------~C---~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~ 161 (841)
.|.+. +.|++. ++.| .|..||... .| +||...+..|. +.|+|++++|+|.|++||.
T Consensus 54 ~C~~~-~~C~n~~g~y~C----~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~ 128 (143)
T 2bou_A 54 SCGKF-SDCWNTEGSYDC----VCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWK 128 (143)
T ss_dssp CCCTT-EEEEECSSCEEE----EECTTEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSC
T ss_pred CCCCC-CEEEcCCCCeEe----ECCCCcccCcCccccccCCCCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcc
Confidence 57665 788775 7889 899998532 47 68875556886 5899999999999999999
Q ss_pred ecCCCCccccccccC
Q psy14257 162 LQPDLITCSYLHPCE 176 (841)
Q Consensus 162 l~~d~~~C~~~~eC~ 176 (841)
+..+++.|...++|+
T Consensus 129 g~~~~~~C~~~~~C~ 143 (143)
T 2bou_A 129 PRHGIPNNQKDTVCE 143 (143)
T ss_dssp BCTTCCSSBTTCCBC
T ss_pred cCCCCccCccCCccC
Confidence 999999999888873
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-06 Score=84.68 Aligned_cols=44 Identities=30% Similarity=0.632 Sum_probs=36.1
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCCC-CCCCCCc--ccCCCCeEe
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDR-KCDESHF--TCNETLRCI 46 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~-~C~~~~~--~C~~~~~Ci 46 (841)
+|||..|+|||..||.|||||.+++|... +|.+++| +|. .+.|+
T Consensus 66 ~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~-~d~C~ 112 (220)
T 2gtl_N 66 ECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTST-WHGCL 112 (220)
T ss_dssp CEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEE-ECSSC
T ss_pred cEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEec-CChhh
Confidence 69999999999999999999976789877 8887766 465 44454
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-06 Score=62.49 Aligned_cols=38 Identities=39% Similarity=1.031 Sum_probs=33.6
Q ss_pred CCCCCCCcccCC----CCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQD----VLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~----~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+.+|.|.+ . +.||+.+++|||..||.+|+||..|
T Consensus 3 ~~C~~~~F~C~~~~~~~-~~CIp~~~~CDG~~DC~DgSDE~~C 44 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAH-GECYPQDWLCDGHPDCDDGRDEWGC 44 (47)
T ss_dssp CCCCCCCSCSSSCSCCC-TTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred CCCCCCeeECCCCCCCC-CeEcCHhhcCCCCcCCCCCcccccC
Confidence 358888999984 3 8999999999999999999999866
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.3e-06 Score=80.77 Aligned_cols=38 Identities=34% Similarity=0.872 Sum_probs=33.1
Q ss_pred CCCCCCCCCcccC-CCCeEecCCCCCCCCCCcccCCCCCCC
Q psy14257 28 QDRKCDESHFTCN-ETLRCIPLAWACDGQPDCGLNDTSDED 67 (841)
Q Consensus 28 ~~~~C~~~~~~C~-~~~~Ci~~~~~Cdg~~dC~~~d~sde~ 67 (841)
+...|.+.+|+|. ++++|||..|+|||..||. |||||.
T Consensus 49 ~~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~--DGSDE~ 87 (220)
T 2gtl_N 49 EGTHCEKRTFQCGGNEQECISDLLVCDGHKDCH--NAHDED 87 (220)
T ss_dssp HCCSSCTTEEECCSSSCCEEETTTTTSSSCCST--TCTTSC
T ss_pred CCCCCCCCccCcCCCCCcEeCcceecCCCCCCC--CCCccC
Confidence 3467889999995 4689999999999999999 888884
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
Probab=97.90 E-value=2.8e-06 Score=74.92 Aligned_cols=59 Identities=29% Similarity=0.613 Sum_probs=15.5
Q ss_pred CeEecC--CCCCCCCCCCCCCCCC---ccc---ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 107 RTCIPK--ALVCDGEPACFNGEDE---MFC---DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 107 ~~Ci~~--~~~Cdg~~~C~~g~de---~~C---~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
..|++. ++.| .|+.||.. ..| +||.. +..|.+.|.|++++|.|.|++||.+.+++++|+
T Consensus 41 ~~C~n~~g~y~C----~C~~Gy~g~~g~~C~dideC~~-~~~C~~~C~n~~gsy~C~C~~Gy~~~~d~~~C~ 107 (107)
T 2w2n_E 41 YVCNDLKIGYEC----LCPDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107 (107)
T ss_dssp SEEECCSBSCEE----ECCTTCEEETTTEEEC----------------------------------------
T ss_pred CEeEeCCCCeEE----ECCCCccccCCCccccccccCC-CCCcCCeeecCCCCEEEECCCCceECCCCCccC
Confidence 356553 7889 89999965 568 78973 468999999999999999999999988888874
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0018 Score=70.43 Aligned_cols=82 Identities=6% Similarity=0.057 Sum_probs=54.3
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
+..+++.|++.+|+++........|+..++++.....+.. .......++++.+++++|+++... +.|+.+++++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-----GKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-----SSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-----CCCCccccceECCCCCEEEEEEcC-CcEEEEECCC
Confidence 5677899988887766533235689999988765444422 111112236778888889877653 4799999988
Q ss_pred CeeEEEEc
Q psy14257 526 KDHHVVLS 533 (841)
Q Consensus 526 ~~~~~i~~ 533 (841)
...+.+..
T Consensus 112 ~~~~~~~~ 119 (396)
T 3c5m_A 112 LEEQVIYT 119 (396)
T ss_dssp CCEEEEEE
T ss_pred CCcEEEEe
Confidence 76666654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.14 Score=65.00 Aligned_cols=423 Identities=6% Similarity=-0.050 Sum_probs=222.1
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
..+.++.|.... . +..+-...+.|...++..+. ....+...-.....+++.+.+ -|++-. ..++
T Consensus 616 ~~v~~~~~s~~~-~--~l~s~~~d~~i~vw~~~~~~---~~~~~~~h~~~v~~~~~s~~~--~~l~s~--------~~d~ 679 (1249)
T 3sfz_A 616 DAVYHACFSQDG-Q--RIASCGADKTLQVFKAETGE---KLLDIKAHEDEVLCCAFSSDD--SYIATC--------SADK 679 (1249)
T ss_dssp SCEEEEEECTTS-S--EEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTS--SEEEEE--------ETTS
T ss_pred ccEEEEEECCCC-C--EEEEEeCCCeEEEEECCCCC---EEEEeccCCCCEEEEEEecCC--CEEEEE--------eCCC
Confidence 446677887653 3 44454567788888776553 222233333455667777644 233221 2356
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEcc-CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYN-QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~-~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
.|..+++............-.....+++.+. ++.++.+-...+.|...+++.......+.. ....+ .+
T Consensus 680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~----h~~~v-------~~ 748 (1249)
T 3sfz_A 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG----HTNSV-------NH 748 (1249)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC----CSSCE-------EE
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC----CCCCE-------EE
Confidence 7888887543322222333444566777765 334445555677888888765543322210 00000 01
Q ss_pred cccc-cceEEEEecCCCcEEEEccCCce-EEEEecCC------------CCCceeEEEcCCCCeEEEEecCCCCCeEEEe
Q psy14257 408 NLWI-GKNLYWVESNLDQIEVAKLSGQF-RRTLIAGD------------MESPRAIALDPRFGLLFWTDWDSKAPRIERC 473 (841)
Q Consensus 408 vdw~-~~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~~------------l~~P~giavd~~~g~Ly~td~~~~~~~I~r~ 473 (841)
+.|. .+.+.++-...+.|.+.++.... ...+.... ......+++.|.+..+..+. .+.|...
T Consensus 749 ~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~~~v~~~ 824 (1249)
T 3sfz_A 749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----KNKVLLF 824 (1249)
T ss_dssp EEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----TTEEEEE
T ss_pred EEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----CCcEEEE
Confidence 1111 14455566667888888876443 33322111 12456788998877777665 3577777
Q ss_pred cCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEE
Q psy14257 474 SMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVY 552 (841)
Q Consensus 474 ~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY 552 (841)
++........... ........+++.+.+..++.+ ...+.|...+++..........+ .....++++. ++..+
T Consensus 825 d~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 825 DIHTSGLLAEIHT----GHHSTIQYCDFSPYDHLAVIA-LSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp ETTTCCEEEEEEC----SSSSCCCEEEECSSTTEEEEE-CSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEE
T ss_pred EecCCCceeEEcC----CCCCceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEE
Confidence 7765443333321 334566789998766665554 44678999988876554444332 2345677774 34444
Q ss_pred EEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 553 WTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 553 ~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
++-...+.|...+..++.....+. . ....... ..
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~--------~-------------------------~~~~~~~------~~------- 931 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIV--------L-------------------------KQEIDVV------FQ------- 931 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSS--------E-------------------------EEEEEEE------EE-------
T ss_pred EEEeCCCeEEEEEccccceeeeec--------c-------------------------cceeeEE------Ec-------
Confidence 554445555555432111000000 0 0000000 00
Q ss_pred ccCceeEE-eecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeee
Q psy14257 633 VADSQFII-FSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVF 711 (841)
Q Consensus 633 ~~~~~~l~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~ 711 (841)
.....++ ......+......... ... . ....+.++++.|..+.+.... ..+.|+..++....
T Consensus 932 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~-~~~~i~~~~~sp~g~~l~~g~-~~g~i~i~d~~~~~--------- 994 (1249)
T 3sfz_A 932 -ENETMVLAVDNIRGLQLIAGKTGQ---IDY--L-PEAQVSCCCLSPHLEYVAFGD-EDGAIKIIELPNNR--------- 994 (1249)
T ss_dssp -TTEEEEEEEESSSSEEEEEESSCC---EEE--E-CCSCEEEEEECTTSSEEEEEE-TTSCCEEEETTTTS---------
T ss_pred -CCCcEEEEecCCcceEEEecCcce---EEE--c-ccCcEEEEEEcCCCCEEEEEc-CCCCEEEEEcCCCc---------
Confidence 0001111 1111111111111110 000 0 113467889999888888777 57888888876544
Q ss_pred eeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCc
Q psy14257 712 EFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKI 791 (841)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p 791 (841)
....+......+.+|++.+.++.|..+ ...++|.+.++.......+... -...
T Consensus 995 -----------------~~~~~~~h~~~v~~l~~s~dg~~l~s~---~~dg~i~vwd~~~~~~~~~~~~-------~~~v 1047 (1249)
T 3sfz_A 995 -----------------VFSSGVGHKKAVRHIQFTADGKTLISS---SEDSVIQVWNWQTGDYVFLQAH-------QETV 1047 (1249)
T ss_dssp -----------------CEEECCCCSSCCCCEEECSSSSCEEEE---CSSSBEEEEETTTTEEECCBCC-------SSCE
T ss_pred -----------------eeeecccCCCceEEEEECCCCCEEEEE---cCCCEEEEEECCCCceEEEecC-------CCcE
Confidence 222233455678899999988877776 3568899999876544332222 3566
Q ss_pred eEEEEeCC
Q psy14257 792 SSIAVWPV 799 (841)
Q Consensus 792 ~~iavd~~ 799 (841)
..+++.|.
T Consensus 1048 ~~~~~~~~ 1055 (1249)
T 3sfz_A 1048 KDFRLLQD 1055 (1249)
T ss_dssp EEEEECSS
T ss_pred EEEEEcCC
Confidence 77777774
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.4e-06 Score=60.85 Aligned_cols=37 Identities=32% Similarity=0.832 Sum_probs=33.4
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+.+|.|.+ +.||+..++|||..+|.+|+||..|
T Consensus 3 ~~C~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 3 HSCSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSSCTTEEECTT--SCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCCceEeCC--CCeEecCcccCCCCCCCCCCCCCCc
Confidence 358888999998 8999999999999999999999764
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
Probab=97.89 E-value=9.2e-06 Score=67.90 Aligned_cols=61 Identities=31% Similarity=0.649 Sum_probs=48.2
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCC--Cccc---ccccccCCCCC-CCcccCCCCcEEecCCCceecCCCCcc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGED--EMFC---DEKQCLRSDCH-HDCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~d--e~~C---~eC~~~~~~C~-~~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
.|.+ +.|++. ++.| .|+.||. +..| +||.. ..+|. +.|.|++++|+|.|++||.+.++ ++|
T Consensus 13 ~C~~--g~C~n~~g~y~C----~C~~Gy~~~g~~C~dideC~~-~~~C~~~~C~n~~g~y~C~C~~G~~g~~~-~~C 81 (82)
T 1emn_A 13 VCKH--GQCINTDGSYRC----ECPFGYILAGNECVDTDECSV-GNPCGNGTCKNVIGGFECTCEEGFEPGPM-MTC 81 (82)
T ss_dssp SCSS--SEECCCSSCCCE----ECCTTEEEETTEEEECCGGGT-CCTTSSSCEEECSSSEEECCSSSSCCCSS-SCC
T ss_pred CcCC--CEEEecCCCEEE----ECCCCeECCCCccCCcccccC-CCCCCCCEeECCCCCEEeECCCCeEeCCC-Ccc
Confidence 4654 667664 7899 8999994 6678 78874 34786 58999999999999999998766 666
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.019 Score=60.34 Aligned_cols=146 Identities=8% Similarity=-0.020 Sum_probs=91.2
Q ss_pred eEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCC
Q psy14257 414 NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRG 493 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~ 493 (841)
+++++-...+.|.+.++........+......+..++++|...+|+.... .+.|...++.......... .-
T Consensus 154 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~------~~ 224 (337)
T 1gxr_A 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL---DNTVRSWDLREGRQLQQHD------FT 224 (337)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEEEEE------CS
T ss_pred CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec---CCcEEEEECCCCceEeeec------CC
Confidence 33344444567777777654443334434466889999998666666553 4788888886544333332 23
Q ss_pred CCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 494 AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
..+..+++.+.+..|+.+. ..+.|..+++.......+... ......+++. ++.++++-...+.|...+..+++..
T Consensus 225 ~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLH---ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCC---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEcCC---ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 4567899987777776665 467899999987766544322 2345677774 3555555555677777776655543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.042 Score=58.39 Aligned_cols=286 Identities=7% Similarity=-0.074 Sum_probs=153.4
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
..+.++.|.... . +.++-..++.|...++..+. ....+...-.....+++.+.+ -+++-. ..++
T Consensus 33 ~~v~~~~~s~~~-~--~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~--~~l~s~--------~~dg 96 (369)
T 3zwl_B 33 RPLTQVKYNKEG-D--LLFSCSKDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFT--KYCVTG--------SADY 96 (369)
T ss_dssp SCEEEEEECTTS-C--EEEEEESSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTS--SEEEEE--------ETTT
T ss_pred ceEEEEEEcCCC-C--EEEEEeCCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCC--CEEEEE--------eCCC
Confidence 345667776642 3 44444556777777766543 222233223345566666533 233221 2356
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC----CCeEEEEEecCCccEE-EEeee------eecCCCc
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH----LNTVESVRVDGSERTV-SFNLE------VLGSDSR 397 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~----~~~I~~~~ldG~~~~~-~~~~~------~~~~~~~ 397 (841)
.|..+++.......... .-.....+++.+.+..|+.+... .+.|...++....... +.... .......
T Consensus 97 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred eEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 78888876443332222 34557789999988888776654 3778777775443211 10000 0000000
Q ss_pred cccCCCCCCccccccceEEEEecCCCcEEEEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC
Q psy14257 398 VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 398 ~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld 476 (841)
..+ ..+++... ++++++-...+.|.+.++.. ......+.........++++|...+|+.... .+.|...++.
T Consensus 176 ~~~---~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~ 248 (369)
T 3zwl_B 176 DAA---TVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR---DTNSFLVDVS 248 (369)
T ss_dssp CCE---EEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred cce---eEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC---CceEEEEECC
Confidence 000 00111222 34444445568899999875 3333333334456789999998666666553 4678888876
Q ss_pred CCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC-------------eEEEEEcCCCeeEEEEcCCCCCCcceE
Q psy14257 477 GEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD-------------SIHTVTYDGKDHHVVLSNHDSLTHPFA 543 (841)
Q Consensus 477 G~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~-------------~I~~~~~dG~~~~~i~~~~~~l~~P~g 543 (841)
......... .-.....+++.+.+..|+.+..... .|...++........+..+ ......
T Consensus 249 ~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~ 320 (369)
T 3zwl_B 249 TLQVLKKYE------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH--FGPLNT 320 (369)
T ss_dssp TCCEEEEEE------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC--SSCEEE
T ss_pred CCceeeeec------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc--cCcEEE
Confidence 544433333 2345678899988888877765432 5666666544333333322 233456
Q ss_pred EEEe-cCeEEEEeCCCCeEEEEec
Q psy14257 544 IALF-ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 544 la~~-~~~lY~td~~~~~i~~~~~ 566 (841)
+++. ++.++++-...+.|...+.
T Consensus 321 ~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEC
Confidence 7764 3455555545566655543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0088 Score=65.54 Aligned_cols=270 Identities=11% Similarity=0.071 Sum_probs=148.5
Q ss_pred cCCCeEEEEEecCCcccceEEEEeC-CCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCc
Q psy14257 270 VIDDKIYNATLIGNSLSNIDVVVQT-GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNI 348 (841)
Q Consensus 270 ~~~~~I~~~~~~~~~~~~~~~~~~~-~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~ 348 (841)
...+.|+..++..+. ....+.. .-.....+++.+.+ -+++.. ..++.|..+++............-
T Consensus 110 ~~d~~v~lw~~~~~~---~~~~~~~~~~~~v~~v~~s~~~--~~l~~~--------~~dg~i~iwd~~~~~~~~~~~~~~ 176 (401)
T 4aez_A 110 ALERNVYVWNADSGS---VSALAETDESTYVASVKWSHDG--SFLSVG--------LGNGLVDIYDVESQTKLRTMAGHQ 176 (401)
T ss_dssp EETTEEEEEETTTCC---EEEEEECCTTCCEEEEEECTTS--SEEEEE--------ETTSCEEEEETTTCCEEEEECCCS
T ss_pred ECCCeEEEeeCCCCc---EeEeeecCCCCCEEEEEECCCC--CEEEEE--------CCCCeEEEEECcCCeEEEEecCCC
Confidence 355667776666553 1222222 22234556666533 233222 134678888765433222222233
Q ss_pred CCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccE-EEEeeeeecCCCccccCCCCCCccccc-cceEEEEecCCCcEE
Q psy14257 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT-VSFNLEVLGSDSRVGIPNCRPEDNLWI-GKNLYWVESNLDQIE 426 (841)
Q Consensus 349 ~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~-~~~~~~~~~~~~~~~i~~~~~~avdw~-~~~LY~tD~~~~~I~ 426 (841)
.....++++ .+ ++++-...+.|...++...... ..+.. .... ..++.|. .+.++++-...+.|.
T Consensus 177 ~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~-------v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 177 ARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQG----HSSE-------VCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp SCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEEC----CSSC-------EEEEEECTTSSEEEEEETTSCEE
T ss_pred CceEEEEEC--CC-EEEEEcCCCCEEEEecccCcceeeEEcC----CCCC-------eeEEEEcCCCCEEEEEeCCCeEE
Confidence 344556664 33 4455556678888888633222 11110 0000 0112222 255566666678999
Q ss_pred EEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCC
Q psy14257 427 VAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLT 506 (841)
Q Consensus 427 v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~ 506 (841)
+.++........+.........|+++|....|+.+-.+...+.|...++.......... .-.....+++.+.+.
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~------~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD------AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE------CSSCEEEEEECSSSS
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe------CCCcEEEEEECCCCC
Confidence 99987654443343444567899999988888887653336788888886544433333 224578899998777
Q ss_pred EEEEEeC-CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 507 RIYWIDA-KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 507 ~LYw~d~-~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
.|+.+.. ..+.|...++.......+............+++. ++.+.++-...+.|...+..+++..
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 7776643 5678998888765443332211112345677774 4555556566778887777666644
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=9.2e-06 Score=61.99 Aligned_cols=42 Identities=31% Similarity=0.673 Sum_probs=37.1
Q ss_pred cccC-CCCCccCceeecCCCCceEEeecCCeeecCCCCceEeCCC
Q psy14257 173 HPCE-AWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK 216 (841)
Q Consensus 173 ~eC~-~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~~~ 216 (841)
+||. ..+.|+|.|.|+ .|+|+|.|++||.|..++++|.++++
T Consensus 2 dEC~~~~~~C~~~C~nt--~Gsy~C~C~~Gy~L~~d~~~C~dide 44 (55)
T 2jkh_L 2 KLCSLDNGDCDQFCHEE--QNSVVCSCARGYTLADNGKACIPTGP 44 (55)
T ss_dssp CCTTTGGGGCSSEEEEE--TTEEEEECCTTEEECTTSSCEEESSS
T ss_pred ccccCCCCCcCcEeEcC--CCCeEEeCCCCCEECCCCCeeccCcc
Confidence 5776 356899999999 99999999999999999999999843
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=5.6e-06 Score=62.82 Aligned_cols=33 Identities=33% Similarity=0.735 Sum_probs=30.5
Q ss_pred CCCCCCcccCCCCcEEecCCCceecCCCCcccc
Q psy14257 139 SDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 139 ~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
..|.+.|.|++|+|.|.|++||.+..++++|.+
T Consensus 20 ~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 20 PQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp CTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred CCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence 579899999999999999999999999999864
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=7.3e-06 Score=61.40 Aligned_cols=37 Identities=32% Similarity=0.849 Sum_probs=33.4
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
|..+|++|+|+|+..+ ++|+|.|+.||.|..|+++|.
T Consensus 1 C~~~ng~C~~~C~n~~-gs~~C~C~~Gy~L~~d~~tC~ 37 (51)
T 1kig_L 1 CSLDNGGCDQFCREER-SEVRCSCAHGYVLGDDSKSCV 37 (51)
T ss_dssp CCTTTTSSSSCCCEET-TEECCCCCTTEEECTTSSCEE
T ss_pred CCCCCCCcCCEeEcCC-CCeEEeCCCCcEECCCCCccc
Confidence 6677899999999865 679999999999999999998
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0041 Score=73.21 Aligned_cols=227 Identities=12% Similarity=0.026 Sum_probs=132.8
Q ss_pred CCCEEEEccC--C-Ccccccccc----CcCCCceEEEEccCCEEEEEeCC---------CCeEEEEEecC------CccE
Q psy14257 327 DGGIEKAGMH--G-ENRSPLVTK----NIQWPSSLVIDYNQDILYWCDSH---------LNTVESVRVDG------SERT 384 (841)
Q Consensus 327 ~~~I~~~~~d--G-~~~~~l~~~----~~~~P~glavD~~~~~lYwaD~~---------~~~I~~~~ldG------~~~~ 384 (841)
+.+|+..+.+ | ...+.+... .-..+.++++.+++++|+++... ...|++++++| +..+
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 4689999988 5 555554432 23456789999999999987643 25899999988 5554
Q ss_pred EEE-eeeeecCCCccccCCCCCCccccccceEEEEecCC-------CcEEEEccCC-c---eEEEEecCCCCCceeEEEc
Q psy14257 385 VSF-NLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-------DQIEVAKLSG-Q---FRRTLIAGDMESPRAIALD 452 (841)
Q Consensus 385 ~~~-~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-------~~I~v~~~~G-~---~~~~l~~~~l~~P~giavd 452 (841)
.+. ..... . ...++...++.|+++.... ..|++.++++ . ..+.+.......+..+++.
T Consensus 181 ~l~~~~~~~----~------~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 181 ELSDDAHRF----V------TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp ESSCSCSSE----E------CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred EEEecCCCc----c------cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 443 11100 0 0113334457788876432 5799999984 3 3444443323567889999
Q ss_pred CCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCC------ceeEEEeccCCEEEEEe-CCCCeEEEEEcCC
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAW------PNGLTLDYQLTRIYWID-AKSDSIHTVTYDG 525 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~------P~glalD~~~~~LYw~d-~~~~~I~~~~~dG 525 (841)
|++. ||++.......+|++.++++...+.+.... ..... ...+++.+. ++++++- .+..+|+.+++++
T Consensus 251 pdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~---~~~~~p~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~d~~~ 325 (662)
T 3azo_A 251 PDGS-LIVATDRTGWWNLHRVDPATGAATQLCRRE---EEFAGPLWTPGMRWFAPLAN-GLIAVVHGKGAAVLGILDPES 325 (662)
T ss_dssp TTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCS---SBSSCCCCSTTCCSEEECTT-SCEEEEEBSSSCEEEEEETTT
T ss_pred CCCe-EEEEECCCCCeEEEEEECCCCceeeccccc---ccccCccccccCceEeEeCC-CEEEEEEEcCccEEEEEECCC
Confidence 8866 555543322458999998665544443211 11111 245666544 4555543 3445788889887
Q ss_pred CeeEEEEcCCCCCCcceEE-EEecCeEEEEeCCC---CeEEEEeccCCcc
Q psy14257 526 KDHHVVLSNHDSLTHPFAI-ALFENHVYWTDWRT---NSVIRANKWNGSD 571 (841)
Q Consensus 526 ~~~~~i~~~~~~l~~P~gl-a~~~~~lY~td~~~---~~i~~~~~~~g~~ 571 (841)
...+.+... .....++ +..++.++++-... ..|+.++..+++.
T Consensus 326 ~~~~~l~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 326 GELVDAAGP---WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp TEEEECCSS---CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CcEEEecCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 766555322 1223455 56667666654332 3677777655543
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
Probab=97.81 E-value=4.4e-06 Score=80.01 Aligned_cols=71 Identities=25% Similarity=0.592 Sum_probs=51.2
Q ss_pred ccccccCCCC-CCCcccCCCCcEEecCCCceecCCCCccccccc--cCC-CCCc----cCceeecCCCC----ceEEeec
Q psy14257 132 DEKQCLRSDC-HHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHP--CEA-WGTC----SQDCEPSVSNN----SYKCTCH 199 (841)
Q Consensus 132 ~eC~~~~~~C-~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~e--C~~-~~~C----s~~C~~~~~~g----~~~C~C~ 199 (841)
|||.. +.+| .+.|+|++++|+|.|++||.+.++++.|+++++ |.. ...| ...|.+. .+ +|.|.|+
T Consensus 4 deC~~-~~~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~--~~~~~~~~~C~C~ 80 (162)
T 1uzk_A 4 NECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNE--IGVGVSKASCCCS 80 (162)
T ss_dssp CGGGS-TTSSBTSEEEEETTEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEE--EEEEECHHHHHTT
T ss_pred ccCCC-CCCCCCCEeECCCCCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCC--cCCcccCceeeCC
Confidence 56763 3467 468999999999999999999999999999887 852 2233 3467776 55 7888888
Q ss_pred CCeeec
Q psy14257 200 AGYELE 205 (841)
Q Consensus 200 ~G~~l~ 205 (841)
+||.+.
T Consensus 81 ~G~~~~ 86 (162)
T 1uzk_A 81 LGKAWG 86 (162)
T ss_dssp TCCEET
T ss_pred CCCCcC
Confidence 887753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.13 Score=61.77 Aligned_cols=279 Identities=9% Similarity=-0.014 Sum_probs=151.7
Q ss_pred CceEeCCCCCCCCeEEeccCc-cccccccccccEEEEec-cccceeeecccccCCcceeEEEecCCCeEEEEEecCCccc
Q psy14257 209 FTCKSKSKNDSSPFVIFSNRH-ELRGVDLRTFNVIALIS-SLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLS 286 (841)
Q Consensus 209 ~~C~~~~~~~~~p~ll~s~~~-~I~~~~~~~~~~~~l~~-~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~ 286 (841)
..|.+. .+..++++.+... .|+..++........+. ....+.++.|...... |.. -...+.|...++..+.
T Consensus 16 v~~i~~--sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~-~~~dg~i~vw~~~~~~-- 88 (814)
T 3mkq_A 16 VKGIDF--HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW--IIV-GSDDFRIRVFNYNTGE-- 88 (814)
T ss_dssp EEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE--EEE-EETTSEEEEEETTTCC--
T ss_pred eEEEEE--CCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE--EEE-EeCCCeEEEEECCCCc--
Confidence 344444 3445566655543 45555555443322222 2345678888876433 444 4457888888876654
Q ss_pred ceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-ccccccccCcCCCceEEEEccCCEEEE
Q psy14257 287 NIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE-NRSPLVTKNIQWPSSLVIDYNQDILYW 365 (841)
Q Consensus 287 ~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~-~~~~l~~~~~~~P~glavD~~~~~lYw 365 (841)
. ...+.........+++.+.++. ++.. ..++.|..++++.. .........-.....+++.+..+.+++
T Consensus 89 ~-~~~~~~~~~~v~~~~~s~~~~~--l~~~--------~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 89 K-VVDFEAHPDYIRSIAVHPTKPY--VLSG--------SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp E-EEEEECCSSCEEEEEECSSSSE--EEEE--------ETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred E-EEEEecCCCCEEEEEEeCCCCE--EEEE--------cCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 2 2223333345666777665432 2211 23567888887654 333333334455678899885566666
Q ss_pred EeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccc---cceEEEEecCCCcEEEEccCCceEEEEecCC
Q psy14257 366 CDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI---GKNLYWVESNLDQIEVAKLSGQFRRTLIAGD 442 (841)
Q Consensus 366 aD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~---~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~ 442 (841)
+-...+.|...++............. ... ...++|. .+.++++-...+.|.+.++........+...
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~---~~~-------v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQ---ERG-------VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCC---TTC-------CCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EEeCCCeEEEEECCCCcceeEEecCC---CCC-------EEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 66677889998886554333222110 000 0123332 3566666667789999998755444444444
Q ss_pred CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 443 l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
......++++|...+|+.... .+.|...++.......... .....+..+++.+.+.+++++-...+.+..++
T Consensus 228 ~~~v~~~~~~~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 228 MSNVSFAVFHPTLPIIISGSE---DGTLKIWNSSTYKVEKTLN-----VGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEET---TSCEEEEETTTCSEEEEEC-----CSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEee-----cCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 566789999998666655543 3567777765433322222 23344556666655554433333334444444
Q ss_pred c
Q psy14257 523 Y 523 (841)
Q Consensus 523 ~ 523 (841)
+
T Consensus 300 ~ 300 (814)
T 3mkq_A 300 L 300 (814)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0021 Score=74.64 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=69.4
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEec--CCCCCeEEEecC--CCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDW--DSKAPRIERCSM--SGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~--~~~~~~I~r~~l--dG~~~~~i~~~~~ 488 (841)
+.|.++....+.+.+..++|...+.+..........++.+|+ ..||+++. +....+|++.++ +|... .+
T Consensus 34 ~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l----- 106 (582)
T 3o4h_A 34 DKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RL----- 106 (582)
T ss_dssp TEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-EC-----
T ss_pred CeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cc-----
Confidence 556665443456666667777665554333235677888887 88998886 222458999998 77665 22
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEc
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~ 533 (841)
........+++.++++.++++....+.+...++++...+.+..
T Consensus 107 --~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~ 149 (582)
T 3o4h_A 107 --EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR 149 (582)
T ss_dssp --TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred --cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec
Confidence 1223344556766666666665555555577887776655543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.015 Score=63.34 Aligned_cols=295 Identities=10% Similarity=-0.035 Sum_probs=160.4
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEe----cCCccc---ceEEEEeCC----------CCCccceEEeeecCcee
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATL----IGNSLS---NIDVVVQTG----------LSTAEGLAVDWIGKNLY 312 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~----~~~~~~---~~~~~~~~~----------l~~p~giavD~~~~~~y 312 (841)
.+.+++|...... ++.+-...+.|...++ ..+... .....+... -.....+++.+.+ -+
T Consensus 47 ~v~~~~~s~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~ 122 (425)
T 1r5m_A 47 NIVSSTWNPLDES--ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG--NS 122 (425)
T ss_dssp CCSEEEECSSCTT--EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS--SE
T ss_pred ceEEEEECCCCCc--EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC--CE
Confidence 4567777765432 3344455677777777 544300 011222221 1134556666533 23
Q ss_pred EEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeee
Q psy14257 313 MFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL 392 (841)
Q Consensus 313 ~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~ 392 (841)
++.. ..++.|..++.+|.....+. ..-.....|++.+.++.|+.+.. .+.|...++........+.....
T Consensus 123 l~~~--------~~dg~i~i~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 123 IVTG--------VENGELRLWNKTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDV-ENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp EEEE--------ETTSCEEEEETTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEET-TCCEEEEETTTTEEEEEECCC--
T ss_pred EEEE--------eCCCeEEEEeCCCCeeeecc-CCCccEEEEEECCCCCEEEEEec-CCeEEEEECCCCcEEEEeecccc
Confidence 3222 23467888887766554442 23345678899888887776654 57788888865543332221110
Q ss_pred cCCCc----cccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCC
Q psy14257 393 GSDSR----VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAP 468 (841)
Q Consensus 393 ~~~~~----~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~ 468 (841)
..... ..-.......+.|..+..+++-...+.|.+.++........+.........|+++|...+|+.+.. .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~ 269 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD---DG 269 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET---TS
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC---CC
Confidence 00000 000000023455666667777777889999998764333333334456789999998776666553 46
Q ss_pred eEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-
Q psy14257 469 RIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF- 547 (841)
Q Consensus 469 ~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~- 547 (841)
.|...++.......... ..-.....+++.+.+ ++++-...+.|...++............ -.....+++.
T Consensus 270 ~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~ 340 (425)
T 1r5m_A 270 TLRIWHGGNGNSQNCFY-----GHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAGRISQ 340 (425)
T ss_dssp CEEEECSSSBSCSEEEC-----CCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEEEEECT
T ss_pred EEEEEECCCCccceEec-----CCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEEEEEcC
Confidence 77777775433322222 233456788998755 4455556789999998765444333332 2345677774
Q ss_pred cCeEEEEeCCCCeEEEEeccCCc
Q psy14257 548 ENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 548 ~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
++.++++-...+.|...+..++.
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCEEEEEECCCeEEEEECCCCc
Confidence 34555555556777777655444
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.5e-05 Score=73.63 Aligned_cols=65 Identities=31% Similarity=0.708 Sum_probs=50.3
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc----ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccc-c
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC----DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCS-Y 171 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~-~ 171 (841)
.|.+. +.|++. ++.| .|+.||.+..| ++|. ..+|. ..|.++.++|+|.|++||. +..|+ +
T Consensus 52 ~C~~~-~~C~~~~g~~~C----~C~~G~~G~~C~~~~~~C~--~~~C~~~g~C~~~~g~~~C~C~~G~~----G~~C~~~ 120 (135)
T 2vj3_A 52 PCQND-ATCLDQIGEFQC----ICMPGYEGVHCEVNTDECA--SSPCLHNGRCLDKINEFQCECPTGFT----GHLCQVD 120 (135)
T ss_dssp CCCSS-CEEEECSSCEEE----ECCTTEESSSSCEECCTTT--TCCSTTTCEEEECSSCEEEECCTTEE----SSSSCEE
T ss_pred CCCCC-CEEeCCCCCcee----eCCCCCcCCcceecCCccc--CCCcCCCCEeECCCCCeEEECCCCCc----CCccCcc
Confidence 57766 888875 6789 89999987777 5676 34675 4899999999999999997 67895 7
Q ss_pred ccccC
Q psy14257 172 LHPCE 176 (841)
Q Consensus 172 ~~eC~ 176 (841)
+++|.
T Consensus 121 i~~C~ 125 (135)
T 2vj3_A 121 LHHIL 125 (135)
T ss_dssp CC---
T ss_pred Ccccc
Confidence 89995
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=2.5e-05 Score=59.11 Aligned_cols=42 Identities=31% Similarity=0.766 Sum_probs=36.4
Q ss_pred ccccccCC---------CCCccCceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 170 SYLHPCEA---------WGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 170 ~~~~eC~~---------~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
.+++||.. ...|.+.|.|+ .|+|+|.|++||.+..++++|.+
T Consensus 2 ~DidEC~~~~~~~~~~~~~~C~~~C~n~--~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 2 VDLDECASRSKSGEEDPQPQCQHLCHNY--VGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp CSCCTTTCSTTTCCCSSSCTTSSEEEEE--TTEEEEECSTTCEECTTSSCEEC
T ss_pred CccccccCcccccccccCCCCCCEeECC--CCCeEEECCCCCeECCCCCccCC
Confidence 46788864 36899999999 99999999999999999999964
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0019 Score=76.08 Aligned_cols=246 Identities=8% Similarity=-0.020 Sum_probs=135.3
Q ss_pred eEEEecCCCeEEEEEec--C-CcccceEEEEeC----CCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCC
Q psy14257 265 VFWTDVIDDKIYNATLI--G-NSLSNIDVVVQT----GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG 337 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~--~-~~~~~~~~~~~~----~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG 337 (841)
|+++.....+|++.+++ + +. ...+... .......+++.+.++.+++.-.+............|+++++++
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEEECCCCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 56665556778887765 3 32 2222111 1224556777777655554332211000011224799999988
Q ss_pred ------CccccccccCcCCCceEEEEccCCEEEEEeCCC-------CeEEEEEecC-C---ccEEEEeeeeecCCCcccc
Q psy14257 338 ------ENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL-------NTVESVRVDG-S---ERTVSFNLEVLGSDSRVGI 400 (841)
Q Consensus 338 ------~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~-------~~I~~~~ldG-~---~~~~~~~~~~~~~~~~~~i 400 (841)
...+.+....-....++++.+++++|+++.... ..|+.+++++ + ..+.+.... ...
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----~~~--- 243 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----EEA--- 243 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----TBC---
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----Cce---
Confidence 555544412234567789999999999887432 5799999984 3 333332210 000
Q ss_pred CCCCCCccccc-cceEEEEecCCC--cEEEEccCCceEEEEecCCC--CC------ceeEEEcCCCCeEEEEecCCCCCe
Q psy14257 401 PNCRPEDNLWI-GKNLYWVESNLD--QIEVAKLSGQFRRTLIAGDM--ES------PRAIALDPRFGLLFWTDWDSKAPR 469 (841)
Q Consensus 401 ~~~~~~avdw~-~~~LY~tD~~~~--~I~v~~~~G~~~~~l~~~~l--~~------P~giavd~~~g~Ly~td~~~~~~~ 469 (841)
...+.|. .++||++....+ .|++.++++...+.+..... .. ...+++.+.+. ++++... ...+
T Consensus 244 ----~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~ 317 (662)
T 3azo_A 244 ----IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAV 317 (662)
T ss_dssp ----EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCE
T ss_pred ----EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccE
Confidence 0012222 255777665545 78888886555444443221 11 35688877644 4444433 4789
Q ss_pred EEEecCCCCCcEEEEEecccCCCCCCceeE-EEeccCCEEEEEeCCC---CeEEEEEcCCCeeEEEEcC
Q psy14257 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGL-TLDYQLTRIYWIDAKS---DSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 470 I~r~~ldG~~~~~i~~~~~~~~~~~~P~gl-alD~~~~~LYw~d~~~---~~I~~~~~dG~~~~~i~~~ 534 (841)
|+++++++...+.+. .......++ +.| +++++++-... ..|+.+++++...+.+...
T Consensus 318 l~~~d~~~~~~~~l~------~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~ 378 (662)
T 3azo_A 318 LGILDPESGELVDAA------GPWTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRARTIGAR 378 (662)
T ss_dssp EEEEETTTTEEEECC------SSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCEEEEESC
T ss_pred EEEEECCCCcEEEec------CCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCceEEeecC
Confidence 999999876544332 122233455 554 56666554332 3788888887766666443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.001 Score=72.38 Aligned_cols=150 Identities=7% Similarity=-0.046 Sum_probs=85.0
Q ss_pred ceEEEEecC-C----CcEEEEccCCceEEEEecCC-CCCceeEEEcCCCCeEEEEecCCCCCe--EEEecCCCCCcEEEE
Q psy14257 413 KNLYWVESN-L----DQIEVAKLSGQFRRTLIAGD-MESPRAIALDPRFGLLFWTDWDSKAPR--IERCSMSGEHRSVIV 484 (841)
Q Consensus 413 ~~LY~tD~~-~----~~I~v~~~~G~~~~~l~~~~-l~~P~giavd~~~g~Ly~td~~~~~~~--I~r~~ldG~~~~~i~ 484 (841)
+.|+++... . .+|+++++++...+.+.... ...+..++++|.+.+|+++........ |+..++++...+.+.
T Consensus 201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 201 STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 446665432 2 47999999876655544321 224667899998877777643212344 999999766555554
Q ss_pred EecccCCCCCCceeEEEec-cCCEEEEEe---------------CCCCeEEEEEcCCCeeEEEEcCCCCC--------Cc
Q psy14257 485 RVDLLTSRGAWPNGLTLDY-QLTRIYWID---------------AKSDSIHTVTYDGKDHHVVLSNHDSL--------TH 540 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~-~~~~LYw~d---------------~~~~~I~~~~~dG~~~~~i~~~~~~l--------~~ 540 (841)
. .. ... +++.+ .+..|+.+. .....|+.+++++...+.+....... ..
T Consensus 281 ~-----~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 352 (396)
T 3c5m_A 281 V-----MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQIT 352 (396)
T ss_dssp E-----CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTT
T ss_pred e-----CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCC
Confidence 3 11 112 67776 555554432 13468999999877665554332110 01
Q ss_pred ceEEEE--ecCeEEEEeCC--CCeEEEEeccCCc
Q psy14257 541 PFAIAL--FENHVYWTDWR--TNSVIRANKWNGS 570 (841)
Q Consensus 541 P~gla~--~~~~lY~td~~--~~~i~~~~~~~g~ 570 (841)
+..+++ .+.+|+++... ...|+.++..++.
T Consensus 353 ~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 353 HPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 222344 34577776543 3357777755444
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.039 Score=61.38 Aligned_cols=230 Identities=6% Similarity=-0.097 Sum_probs=128.6
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEec--CCcccceEEEEe-CCCCCccceEEeeecCceeEEEeeecCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLI--GNSLSNIDVVVQ-TGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSS 326 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~--~~~~~~~~~~~~-~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~ 326 (841)
.+.+++|...... |+.+-...+.|...++. ++. ....+.. ..-..+..+++.+.++ +++..+ .
T Consensus 104 ~v~~~~~s~d~~~--l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~--------~ 169 (450)
T 2vdu_B 104 YIRNLRLTSDESR--LIACADSDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAEDDT--TVIIAD--------K 169 (450)
T ss_dssp CEEEEEECTTSSE--EEEEEGGGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECTTSS--EEEEEE--------T
T ss_pred ceEEEEEcCCCCE--EEEEECCCCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcCCCC--EEEEEe--------C
Confidence 3668888776443 67777778888888876 553 2333221 2223566777776543 333322 2
Q ss_pred CCCEEEEccCCCcccc----ccccCcCCCceEEEEcc---CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccc
Q psy14257 327 DGGIEKAGMHGENRSP----LVTKNIQWPSSLVIDYN---QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVG 399 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~----l~~~~~~~P~glavD~~---~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~ 399 (841)
++.|..+++....... ...........|++.+. +..|+.+ ...+.|+..++........+.. +....
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~---~h~~~-- 243 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS-DRDEHIKISHYPQCFIVDKWLF---GHKHF-- 243 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE-ETTSCEEEEEESCTTCEEEECC---CCSSC--
T ss_pred CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE-cCCCcEEEEECCCCceeeeeec---CCCCc--
Confidence 4678888765433222 22234456778999987 4455444 4568898888875443322110 00000
Q ss_pred cCCCCCCccccccceEEEEecCCCcEEEEccCC-ceEEEEecC------------------------CCCCceeEEEcCC
Q psy14257 400 IPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSG-QFRRTLIAG------------------------DMESPRAIALDPR 454 (841)
Q Consensus 400 i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~------------------------~l~~P~giavd~~ 454 (841)
...+.|..++++++-...+.|.+.++.. +....+-.. .-....+|++.|.
T Consensus 244 -----v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 244 -----VSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp -----EEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred -----eEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 0112222355666666778999999864 434443210 1124578999998
Q ss_pred CCeEEEEecCCCCCeEEEecC--C-CCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEe
Q psy14257 455 FGLLFWTDWDSKAPRIERCSM--S-GEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~l--d-G~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d 512 (841)
..+||.+... .+.|...++ . +.....+.... .. ..+..+++++ +.+|++-
T Consensus 319 ~~~l~~~~~~--d~~i~iw~~~~~~~~~l~~~~~~~---~~-~~v~~~~~~~--~~~~v~~ 371 (450)
T 2vdu_B 319 LPFVAFFVEA--TKCIIILEMSEKQKGDLALKQIIT---FP-YNVISLSAHN--DEFQVTL 371 (450)
T ss_dssp SSEEEEEETT--CSEEEEEEECSSSTTCEEEEEEEE---CS-SCEEEEEEET--TEEEEEE
T ss_pred CCEEEEEECC--CCeEEEEEeccCCCCceeeccEec---cC-CceEEEEecC--CcEEEEE
Confidence 8888888744 456666665 2 22222222211 22 6688999986 4555553
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0052 Score=64.98 Aligned_cols=197 Identities=11% Similarity=0.127 Sum_probs=116.0
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
++.|.+.+.+|+.+..... .-.....+++|. ++.||+.. ..+.|..++.+|...... ... ...... .
T Consensus 116 ~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~-~g~l~vgt-~~~~l~~~d~~g~~~~~~-~~~---~~~~~~------~ 182 (330)
T 3hxj_A 116 DGHLYAINTDGTEKWRFKT-KKAIYATPIVSE-DGTIYVGS-NDNYLYAINPDGTEKWRF-KTN---DAITSA------A 182 (330)
T ss_dssp TSEEEEECTTSCEEEEEEC-SSCCCSCCEECT-TSCEEEEC-TTSEEEEECTTSCEEEEE-ECS---SCCCSC------C
T ss_pred CCEEEEEcCCCCEEEEEcC-CCceeeeeEEcC-CCEEEEEc-CCCEEEEECCCCCEeEEE-ecC---CCceee------e
Confidence 4578888887654333221 222344566664 45566654 457888888884432222 111 100000 0
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
.+| ..++||+.. +.|.+++.+|+....... .......+++++. |.||++.. .+.|++.+.+|.....+..
T Consensus 183 ~~d-~~g~l~v~t---~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~~-g~l~v~t~---~~gl~~~~~~g~~~~~~~~- 252 (330)
T 3hxj_A 183 SIG-KDGTIYFGS---DKVYAINPDGTEKWNFYA-GYWTVTRPAISED-GTIYVTSL---DGHLYAINPDGTEKWRFKT- 252 (330)
T ss_dssp EEC-TTCCEEEES---SSEEEECTTSCEEEEECC-SSCCCSCCEECTT-SCEEEEET---TTEEEEECTTSCEEEEEEC-
T ss_pred EEc-CCCEEEEEe---CEEEEECCCCcEEEEEcc-CCcceeceEECCC-CeEEEEcC---CCeEEEECCCCCEeEEeeC-
Confidence 111 237788876 788888877765544332 2245778899864 78988874 3689999876655433321
Q ss_pred cccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeC
Q psy14257 487 DLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDW 556 (841)
Q Consensus 487 ~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~ 556 (841)
.-..+..+++| .+++||++.. .+.|.+++.+|.......... .....+.. .++.||+...
T Consensus 253 -----~~~~~~~~~~~-~~g~l~v~t~-~ggl~~~d~~g~~~~~~~~~~---~~~~~~~~d~~g~l~~gt~ 313 (330)
T 3hxj_A 253 -----GKRIESSPVIG-NTDTIYFGSY-DGHLYAINPDGTEKWNFETGS---WIIATPVIDENGTIYFGTR 313 (330)
T ss_dssp -----SSCCCSCCEEC-TTSCEEEECT-TCEEEEECTTSCEEEEEECSS---CCCSCCEECTTCCEEEECT
T ss_pred -----CCCccccceEc-CCCeEEEecC-CCCEEEECCCCcEEEEEEcCC---ccccceEEcCCCEEEEEcC
Confidence 22334567777 4688988765 468999998877665543221 23345566 5688888754
|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=1.6e-05 Score=90.52 Aligned_cols=61 Identities=33% Similarity=0.746 Sum_probs=42.3
Q ss_pred ccCccCcCCcCCCCCC-CCCCCCCCCC-CCCCC----CCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 4 IIAYWKCDGDEDCKDG-SDELAEHCQD-RKCDE----SHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 4 i~~~~~Cdg~~dC~dg-sde~~~~C~~-~~C~~----~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
|....++. ...|.+. .|+. .|.. ..|.. .+|+|..+|+||+..|+|||..||. |+|||.+|
T Consensus 35 v~~p~q~g-G~~C~~~l~d~~--~C~~~~~C~~~~~c~~f~C~~~g~Ci~~~~~Cdg~~dC~--d~sdE~~c 101 (537)
T 3ojy_B 35 LLQPSQFH-GEPCNFSDKEVE--DCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCG--DQSDEANC 101 (537)
T ss_dssp EEECEETT-CCCCCSCSEEEE--ECCCCCCCCCCSCCSSEECTTTCCEECGGGTTSSSCCSS--SSCTTSSC
T ss_pred eccccccC-CCcCccchhhhc--cCCCccccccCCCCCccCcCCCCcEeeccccCCCCCCCC--CccccccC
Confidence 33333444 4456643 5655 5633 33422 7999976799999999999999999 88888654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00037 Score=80.99 Aligned_cols=212 Identities=10% Similarity=-0.001 Sum_probs=125.0
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC----CCCeEEEEEe--cCCccEEEEeeeeecCCCccccCC
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS----HLNTVESVRV--DGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~----~~~~I~~~~l--dG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
.+..+.++|...+.+..........+++.++ +.||+++. ....|+.+++ +|...+ +.... ...
T Consensus 45 ~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~-l~~~~------~~~--- 113 (582)
T 3o4h_A 45 SVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR-LEAVK------PMR--- 113 (582)
T ss_dssp EEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE-CTTSC------SBE---
T ss_pred ceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc-ccCCC------Cce---
Confidence 3444445665555544333334456677666 78888886 2337888888 776552 21100 000
Q ss_pred CCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC-CCCeEEEecCCCCCcE
Q psy14257 403 CRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS-KAPRIERCSMSGEHRS 481 (841)
Q Consensus 403 ~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~-~~~~I~r~~ldG~~~~ 481 (841)
..++.+.++.++++....+.+.+.++++...+.+..... ..++++|++.+|+++.... ....|++.++++...+
T Consensus 114 --~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 114 --ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp --EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred --eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 012333345666665555666688888776655554321 7899999988888665321 1267999999877666
Q ss_pred EEEEecccCCCCCCceeEEEeccCCEEEEEeCCC-CeEEEEEcCCCeeEEEEcCCCCCCcceEEE--------Ee-cCeE
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS-DSIHTVTYDGKDHHVVLSNHDSLTHPFAIA--------LF-ENHV 551 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~-~~I~~~~~dG~~~~~i~~~~~~l~~P~gla--------~~-~~~l 551 (841)
.+.. .......+++.++++.|+.++... ..|+..++++...+ +..... ..+.+++ +. ++++
T Consensus 189 ~l~~------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~spdg~~ 259 (582)
T 3o4h_A 189 VFDS------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFSSYRPTAITWLGYLPDGRL 259 (582)
T ss_dssp EECC------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHHHHCCSEEEEEEECTTSCE
T ss_pred Eeec------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChhhhhhccccceeEcCCCcE
Confidence 5533 333458899999888898555432 28999999987776 443321 1222233 42 3477
Q ss_pred EEEeCCCCeEEEEe
Q psy14257 552 YWTDWRTNSVIRAN 565 (841)
Q Consensus 552 Y~td~~~~~i~~~~ 565 (841)
|++-...+.+....
T Consensus 260 ~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 260 AVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEcCCcEEEEE
Confidence 77665555544343
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.017 Score=68.61 Aligned_cols=271 Identities=10% Similarity=0.053 Sum_probs=137.9
Q ss_pred CccccccccccccEEEEecccc----ceeeecccccCCcceeEEEecC--------CCeEEEEEecCCcccceEEEEeCC
Q psy14257 228 RHELRGVDLRTFNVIALISSLK----NTIALDFYYTPTANMVFWTDVI--------DDKIYNATLIGNSLSNIDVVVQTG 295 (841)
Q Consensus 228 ~~~I~~~~~~~~~~~~l~~~~~----~~~avd~~~~~~~~~lyw~d~~--------~~~I~~~~~~~~~~~~~~~~~~~~ 295 (841)
...|+..++.+.....+..... .+..+.|..+.+. |.++... .+.|+..++.++.. .. +...
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~--l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~-l~~~ 109 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREY--ALFSYNVEPIYQHSYTGYYVLSKIPHGDP---QS-LDPP 109 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSE--EEEEESCCCCSSSCCCSEEEEEESSSCCC---EE-CCCT
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCE--EEEEecCccceeecceeeEEEEECCCCce---Ee-ccCC
Confidence 3456666776665555554322 2556677665433 5444221 25677777776541 11 1111
Q ss_pred CC---CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccC------------------cCCCceE
Q psy14257 296 LS---TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKN------------------IQWPSSL 354 (841)
Q Consensus 296 l~---~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~------------------~~~P~gl 354 (841)
.. .+..+++.|.++.+.+ .+ .+.|+..++++...+.+.... +..+.++
T Consensus 110 ~~~~~~~~~~~~SPdG~~la~-~~----------~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~ 178 (723)
T 1xfd_A 110 EVSNAKLQYAGWGPKGQQLIF-IF----------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (723)
T ss_dssp TCCSCCCSBCCBCSSTTCEEE-EE----------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred ccccccccccEECCCCCEEEE-EE----------CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceE
Confidence 11 1455677766544432 11 136777877765544443321 2244789
Q ss_pred EEEccCCEEEEEeCCC---------------------------------CeEEEEEecCCcc-EEEEeeeeecCCCcccc
Q psy14257 355 VIDYNQDILYWCDSHL---------------------------------NTVESVRVDGSER-TVSFNLEVLGSDSRVGI 400 (841)
Q Consensus 355 avD~~~~~lYwaD~~~---------------------------------~~I~~~~ldG~~~-~~~~~~~~~~~~~~~~i 400 (841)
++.+++++|+++.... ..|+.+++++... +.+.........
T Consensus 179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~----- 253 (723)
T 1xfd_A 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR----- 253 (723)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS-----
T ss_pred EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc-----
Confidence 9999999888875321 1455555554432 211100000000
Q ss_pred CCCCCCcccc--ccceEE-EEec--CCCcEEEEccCCceEEEEecC---CCCC--ceeEEEcCCCCeEEEE-ecCCC---
Q psy14257 401 PNCRPEDNLW--IGKNLY-WVES--NLDQIEVAKLSGQFRRTLIAG---DMES--PRAIALDPRFGLLFWT-DWDSK--- 466 (841)
Q Consensus 401 ~~~~~~avdw--~~~~LY-~tD~--~~~~I~v~~~~G~~~~~l~~~---~l~~--P~giavd~~~g~Ly~t-d~~~~--- 466 (841)
......+.| .+..|+ +++. ....|.+.++++.....+... .... +..+++.|++.+|++. .....
T Consensus 254 -~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 254 -EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp -SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred -cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 000001222 223342 2332 234677888865544433321 1111 3478999988778775 32211
Q ss_pred -CCeEEEec-CCCCC---cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC----CCeEEEEEcCCC
Q psy14257 467 -APRIERCS-MSGEH---RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK----SDSIHTVTYDGK 526 (841)
Q Consensus 467 -~~~I~r~~-ldG~~---~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~----~~~I~~~~~dG~ 526 (841)
..+|+..+ .++.. .+.+.. ........+++++++++||++-.. .-.|+.++++|.
T Consensus 333 ~~~~l~~~d~~~~~~~~~~~~l~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSNDNIQSITS-----GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp CEEEEEEECSSCCSSSCCCCBSCC-----SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred ceeEEEEEeccCCCCccceeEeec-----CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 23788888 56554 333321 112122336899999999887543 347888888775
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=6.7e-06 Score=80.36 Aligned_cols=38 Identities=42% Similarity=0.760 Sum_probs=28.4
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCCC-CCCCCCccc
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDR-KCDESHFTC 39 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~-~C~~~~~~C 39 (841)
+|||..|+|||+.||.|||||....|... .|...+|.+
T Consensus 67 ~CI~~~~~CDG~~DC~DgSDE~~~~C~~~~~~~~~~~~g 105 (217)
T 2gtl_M 67 ECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTG 105 (217)
T ss_dssp CEEEGGGTTSSSCCSSSSTTTSHHHHCCGGGCTTCEEEE
T ss_pred cEechhhccCCCCCCCCCCccccCcCCCCcccCCccccc
Confidence 59999999999999999999974457544 333334433
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
Probab=97.51 E-value=3.6e-05 Score=74.04 Aligned_cols=83 Identities=27% Similarity=0.678 Sum_probs=62.9
Q ss_pred CeEecCCCCCCCCCCCCCCCCCcccccccccCCCCCC-CcccCCCCcEEecCCCceecCCCCccc-cccccCCCCCccC-
Q psy14257 107 RTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHH-DCYNTPEGFMCVCPRDMYLQPDLITCS-YLHPCEAWGTCSQ- 183 (841)
Q Consensus 107 ~~Ci~~~~~Cdg~~~C~~g~de~~C~eC~~~~~~C~~-~C~~~~g~~~C~C~~Gy~l~~d~~~C~-~~~eC~~~~~Cs~- 183 (841)
+.|+. .+.| .|..||.+..|++|...+ .|.+ .|. ++|+|.|++||. +..|+ ++++|....+|..
T Consensus 77 g~C~~-~~~C----~C~~G~~G~~C~~C~~~~-~C~~g~C~---~~~~C~C~~G~~----G~~C~~~~~~C~~~~~C~~~ 143 (169)
T 2vj2_A 77 GSCKL-PGDC----RCQYGWQGLYCDKCIPHP-GCVHGICN---EPWQCLCETNWG----GQLCDKDLNYCGTHQPCLNG 143 (169)
T ss_dssp EECSS-TTCC----EECTTEESSSSCEECCCT-TCSSEECS---STTCCEECTTEE----TTTTCEESCHHHHTCCCCTT
T ss_pred cccCC-CCee----ECCCCCCCCCcccCCCCC-CCCCCCcC---CCCEEeCCCCCC----CCcccCCCCCCCCCCCCCCC
Confidence 56655 5677 899999888898776432 3654 676 679999999997 66797 7888864457754
Q ss_pred -ceeecCCCCceEEeecCCee
Q psy14257 184 -DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 184 -~C~~~~~~g~~~C~C~~G~~ 203 (841)
.|.++ ..++|+|.|++||.
T Consensus 144 g~C~~~-~~~~~~C~C~~G~~ 163 (169)
T 2vj2_A 144 GTCSNT-GPDKYQCSCPEGYS 163 (169)
T ss_dssp CEEEEC-STTCEEEECCTTCC
T ss_pred CEEcCC-CCCCcEeECCCCCc
Confidence 78873 15789999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0085 Score=65.47 Aligned_cols=228 Identities=8% Similarity=0.009 Sum_probs=127.5
Q ss_pred CCCEEEEccCC----CccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCc------cEEEEeeeeecCCC
Q psy14257 327 DGGIEKAGMHG----ENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSE------RTVSFNLEVLGSDS 396 (841)
Q Consensus 327 ~~~I~~~~~dG----~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~------~~~~~~~~~~~~~~ 396 (841)
++.|..++++. ..........-.....|++.+.++.++++-...+.|...++.... ...... .....
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~-- 164 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-QSMSS-- 164 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-CSCCS--
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc-cccCC--
Confidence 46788888765 212222223445677899988755666666677888888887654 111100 00000
Q ss_pred ccccCCCCCCccccc--cceEEEEecCCCcEEEEccCCceEEEEecCC------CCCceeEEEcCCCCeEEEEecCCC-C
Q psy14257 397 RVGIPNCRPEDNLWI--GKNLYWVESNLDQIEVAKLSGQFRRTLIAGD------MESPRAIALDPRFGLLFWTDWDSK-A 467 (841)
Q Consensus 397 ~~~i~~~~~~avdw~--~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~------l~~P~giavd~~~g~Ly~td~~~~-~ 467 (841)
......+.|. ++.++++-...+.|.+.++........+... ......++++|.+..++++-.... .
T Consensus 165 -----~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 165 -----VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp -----SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred -----CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 0011233443 2567777777889999998765444333322 456789999998655555543311 1
Q ss_pred CeEEEecCCCC--CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEE
Q psy14257 468 PRIERCSMSGE--HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIA 545 (841)
Q Consensus 468 ~~I~r~~ldG~--~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla 545 (841)
+.|...++... ....+.. ..-.....+++.+.+++++++-...+.|...++........+..+ -.....++
T Consensus 240 ~~i~~~d~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~ 312 (416)
T 2pm9_A 240 PSILIWDLRNANTPLQTLNQ-----GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR--GNWCFKTK 312 (416)
T ss_dssp CCCCEEETTSTTSCSBCCCS-----CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS--SSCCCCEE
T ss_pred ceEEEEeCCCCCCCcEEeec-----CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC--CCceEEEE
Confidence 26666666532 2222210 123456788888744555555555788999988654333333222 12345677
Q ss_pred Eec-C-eEEEEeCCCCeEEEEeccCC
Q psy14257 546 LFE-N-HVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 546 ~~~-~-~lY~td~~~~~i~~~~~~~g 569 (841)
+.. + .++++-...+.|...+..++
T Consensus 313 ~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 313 FAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp ECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred ECCCCCCEEEEEecCCcEEEEEccCC
Confidence 743 3 57777666677766665433
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0083 Score=71.33 Aligned_cols=301 Identities=9% Similarity=0.026 Sum_probs=149.0
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCC---CccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLS---TAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~---~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
+..+.|.... + .+| + ...+.|+..++.++. ...++...-. .+..+++.|.++.+.+...+-. .-.....
T Consensus 19 ~~~~~~spdg-~-~~~-~-~~dg~i~~~d~~~g~---~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~-~~~~~~~ 90 (723)
T 1xfd_A 19 DPEAKWISDT-E-FIY-R-EQKGTVRLWNVETNT---STVLIEGKKIESLRAIRYEISPDREYALFSYNVEP-IYQHSYT 90 (723)
T ss_dssp CCCCCBSSSS-C-BCC-C-CSSSCEEEBCGGGCC---CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC-CSSSCCC
T ss_pred ccccEEcCCC-c-EEE-E-eCCCCEEEEECCCCc---EEEEeccccccccccceEEECCCCCEEEEEecCcc-ceeecce
Confidence 3455565542 2 133 3 345677777766553 2233322111 2677888887654443221111 0011234
Q ss_pred CCEEEEccCCCccccccccC--cCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCC---
Q psy14257 328 GGIEKAGMHGENRSPLVTKN--IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN--- 402 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~--~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~--- 402 (841)
+.|+.+++++...+.+.... -..+..+++.+++++|.++.. +.|+..+++++..+.+........ ...|++.
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~-~~~g~~~~v~ 167 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGV-IYNGLSDWLY 167 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTTT-EEEEECCHHH
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCCc-eECcccceeE
Confidence 68889998876554443321 223667888888888877765 578888888766555432210000 0000000
Q ss_pred -----CCCCcccc--ccceEEEEecC---------------------------------CCcEEEEccCCceE-EEEecC
Q psy14257 403 -----CRPEDNLW--IGKNLYWVESN---------------------------------LDQIEVAKLSGQFR-RTLIAG 441 (841)
Q Consensus 403 -----~~~~avdw--~~~~LY~tD~~---------------------------------~~~I~v~~~~G~~~-~~l~~~ 441 (841)
....++.| .++.|+++... ...|.+.++++... ..+...
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 00001222 33445544321 12566677665442 222211
Q ss_pred C-----CCCceeEEEcCCCCeEEEE-ecCCCCCeEEEecCCCCCcEEEEEecccCCCCCC--ceeEEEeccCCEEEEE-e
Q psy14257 442 D-----MESPRAIALDPRFGLLFWT-DWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAW--PNGLTLDYQLTRIYWI-D 512 (841)
Q Consensus 442 ~-----l~~P~giavd~~~g~Ly~t-d~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~--P~glalD~~~~~LYw~-d 512 (841)
. ......+++.|++.+|+.. +.+.....|+..++++.....+..... ..... +..+++.+++++|+++ .
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccCCCceEcCCCCeEEEEEe
Confidence 0 1234568999986666333 433224578888887655544433110 11111 2478898888888876 4
Q ss_pred CCCC------eEEEEE-cCCCe---eEEEEcCCCCCCcceEEEE--ecCeEEEEeCC----CCeEEEEec
Q psy14257 513 AKSD------SIHTVT-YDGKD---HHVVLSNHDSLTHPFAIAL--FENHVYWTDWR----TNSVIRANK 566 (841)
Q Consensus 513 ~~~~------~I~~~~-~dG~~---~~~i~~~~~~l~~P~gla~--~~~~lY~td~~----~~~i~~~~~ 566 (841)
...+ .|+.++ .++.. .+.+.... ......+++ .+.+||++... ...|++++.
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 3333 677887 45554 33332211 111112344 35678776543 244666653
|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=4.6e-05 Score=86.93 Aligned_cols=61 Identities=36% Similarity=0.779 Sum_probs=43.2
Q ss_pred eccCccCcCCcCCCCCC-CCCCCCCCCC-C------CCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 3 CIIAYWKCDGDEDCKDG-SDELAEHCQD-R------KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 3 Ci~~~~~Cdg~~dC~dg-sde~~~~C~~-~------~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.|....++.| ..|.+. .|+. .|.+ . .|. ++|+|..+++|||..|+|||..||. |+|||.+|
T Consensus 32 ~v~~p~q~gG-~~C~~~l~d~~--~C~~~~~c~~~~~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~--d~sDE~~C 100 (554)
T 3ojy_A 32 SLLQPNKFGG-TICSGDIWDQA--SCSSSTTCVRQAQCG-QDFQCKETGRCLKRHLVCNGDQDCL--DGSDEDDC 100 (554)
T ss_dssp CEEECBCSSC-CCCCSCSEEEE--ECCCCCCC--CCCCS-SSEECSSSCCEECGGGTTSSSCCSS--SCTTSSSC
T ss_pred eeccccccCC-CCCCCcccccc--CCCCCCCCcccCCCC-CcCccCCCCEEcccccccCCcccCC--CccccccC
Confidence 3444445544 457664 5555 5632 3 353 6999965789999999999999999 88888664
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0066 Score=66.36 Aligned_cols=253 Identities=10% Similarity=0.034 Sum_probs=140.6
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCccc-ceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLS-NIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~-~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
.+.++.|.... . +..+-...+.|...++...... .....+...-.....+++.+.++++++. ...++
T Consensus 69 ~v~~~~~s~~~-~--~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s---------~~~dg 136 (416)
T 2pm9_A 69 KFNDLDWSHNN-K--IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS---------GGNNG 136 (416)
T ss_dssp CEEEEEECSSS-S--CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE---------ECSSS
T ss_pred ceEEEEECCCC-C--eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE---------EcCCC
Confidence 46677786653 2 3444455678887776541100 1222222223345667777653333332 22456
Q ss_pred CEEEEccCCCc------c-ccc--cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccc
Q psy14257 329 GIEKAGMHGEN------R-SPL--VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVG 399 (841)
Q Consensus 329 ~I~~~~~dG~~------~-~~l--~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~ 399 (841)
.|..+++.... . ..+ ....-.....|++.+.++.++++-...+.|...++........+....... +
T Consensus 137 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~ 212 (416)
T 2pm9_A 137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS----G 212 (416)
T ss_dssp CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----C
T ss_pred eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----c
Confidence 88888876543 1 111 122344677899998867777777778889999987654433322110000 0
Q ss_pred cCCCCCCccccc--cceEEEEecCCC---cEEEEccCCc-eEEEEec-CCCCCceeEEEcCCCCeEEEEecCCCCCeEEE
Q psy14257 400 IPNCRPEDNLWI--GKNLYWVESNLD---QIEVAKLSGQ-FRRTLIA-GDMESPRAIALDPRFGLLFWTDWDSKAPRIER 472 (841)
Q Consensus 400 i~~~~~~avdw~--~~~LY~tD~~~~---~I~v~~~~G~-~~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r 472 (841)
. ......+.|. +..++++-...+ .|.+.++... .....+. ........++++|.++.++++-.. .+.|..
T Consensus 213 ~-~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~--dg~v~~ 289 (416)
T 2pm9_A 213 I-KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR--DNTVLL 289 (416)
T ss_dssp C-CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES--SSEEEE
T ss_pred c-CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC--CCCEEE
Confidence 0 0000122222 235666665555 8888888653 2222222 334567899999844544444433 467888
Q ss_pred ecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC
Q psy14257 473 CSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 473 ~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~ 526 (841)
.++.......... ..-.....+++.+.+.+++++-...+.|...++...
T Consensus 290 wd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 290 WNPESAEQLSQFP-----ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp ECSSSCCEEEEEE-----CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eeCCCCccceeec-----CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 8876443333333 233456789998766466667666788888887654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.2 Score=52.84 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=77.8
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+++..+-...+.|.+.++........+.........|+++|...+|+... . .+.|...++.......... ..
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~--dg~i~iwd~~~~~~~~~~~-----~h 247 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-D--DGYIKIYDVQHANLAGTLS-----GH 247 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-T--TSCEEEEETTTCCEEEEEC-----CC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-C--CCeEEEEECCCcceeEEEc-----CC
Confidence 33344444556777777754433323333334568999999765555443 2 4567777765443332222 23
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEE
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~ 564 (841)
-.....+++.+.+..|+ +-...+.|...++........+... .....+|++. ++...++-...+.|...
T Consensus 248 ~~~v~~~~~sp~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFV-SSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp SSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 44567899987666555 4445678888888754433333222 2345677774 34444444444555433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.36 E-value=0.36 Score=57.47 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=76.5
Q ss_pred eEEEEecCCCEEE-EEECC--CCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcce-eEEee
Q psy14257 672 NNLNFDAANKKIY-WTDQE--YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSG-LAIDW 747 (841)
Q Consensus 672 ~~v~~d~~~~~iy-w~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~g-lAvD~ 747 (841)
..++|.|..+.|+ |.... ...|++++++|.. ...+.. +...+.. +++|
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~--------------------------~~~lT~-g~~~v~~~~~~d- 373 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD--------------------------CTFITK-GTWEVIGIEALT- 373 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS--------------------------CEESCC-SSSCEEEEEEEC-
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc--------------------------eEeccc-CCEEEEEEEEEe-
Confidence 4577999988887 66433 3579998888766 223222 2222333 3366
Q ss_pred cCCcEEEEecC----CCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCC
Q psy14257 748 IAQNMFIAVSS----PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 748 ~~~~LYw~~~~----~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~ 823 (841)
++.||++... .....|.+++++|...++.+..+... .......+++.|...++..+-.+...+.+...++++.
T Consensus 374 -~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~--~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 374 -SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNP--ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp -SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTST--TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred -CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCC--CCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 8889998532 23457889999987665444420000 0135667888887776655555443467777777755
Q ss_pred ceEEEe
Q psy14257 824 KRETVV 829 (841)
Q Consensus 824 ~~~~l~ 829 (841)
....+.
T Consensus 451 ~~~~~l 456 (740)
T 4a5s_A 451 KGLRVL 456 (740)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 444443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.25 Score=53.67 Aligned_cols=277 Identities=11% Similarity=-0.004 Sum_probs=155.2
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEec-CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA-GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~ 485 (841)
.++|.++.|+.. ...+.|.+.+++......+.. ..-.....+++.|...+|+.... .+.|...++..........
T Consensus 98 ~~~~s~~~l~~~-~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~ 173 (401)
T 4aez_A 98 LLDWSNLNVVAV-ALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG---NGLVDIYDVESQTKLRTMA 173 (401)
T ss_dssp CEEECTTSEEEE-EETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEEC
T ss_pred EEeecCCCEEEE-ECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC---CCeEEEEECcCCeEEEEec
Confidence 456666665544 356788888886544333333 23456789999998777766654 3577777775443332222
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC-CeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEE
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG-KDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIR 563 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG-~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~ 563 (841)
..-.....++++ .. ++++-...+.|...++.. .........+ -....++++. ++.++++-...+.|..
T Consensus 174 -----~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~v~i 243 (401)
T 4aez_A 174 -----GHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQGH--SSEVCGLAWRSDGLQLASGGNDNVVQI 243 (401)
T ss_dssp -----CCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -----CCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCcceeeEEcCC--CCCeeEEEEcCCCCEEEEEeCCCeEEE
Confidence 233345667765 34 444555578899888873 3222222222 2345677774 4455555555567777
Q ss_pred EeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-
Q psy14257 564 ANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS- 642 (841)
Q Consensus 564 ~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~- 642 (841)
.+..++.....+..... .. ...+.+|++. .+++.+
T Consensus 244 wd~~~~~~~~~~~~~~~--------------------~v----------~~~~~~p~~~--------------~ll~~~~ 279 (401)
T 4aez_A 244 WDARSSIPKFTKTNHNA--------------------AV----------KAVAWCPWQS--------------NLLATGG 279 (401)
T ss_dssp EETTCSSEEEEECCCSS--------------------CC----------CEEEECTTST--------------TEEEEEC
T ss_pred ccCCCCCccEEecCCcc--------------------eE----------EEEEECCCCC--------------CEEEEec
Confidence 77655443332211100 00 0112222221 112222
Q ss_pred --cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEEC-CCCeEEEEEcccCceeeeeeeeeeeeccccc
Q psy14257 643 --RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQ-EYNEVKRSSIVGGQIQLVVDAVFEFYLTPLS 719 (841)
Q Consensus 643 --~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~-~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~ 719 (841)
....|+..++..... ... +..-..+.+++|.+..+.++.+.. ..+.|+..++......
T Consensus 280 gs~d~~i~i~d~~~~~~--~~~--~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--------------- 340 (401)
T 4aez_A 280 GTMDKQIHFWNAATGAR--VNT--VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--------------- 340 (401)
T ss_dssp CTTTCEEEEEETTTCCE--EEE--EECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE---------------
T ss_pred CCCCCEEEEEECCCCCE--EEE--EeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce---------------
Confidence 245566666654321 111 122245789999999999888753 5788888888764411
Q ss_pred ccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc
Q psy14257 720 KRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE 772 (841)
Q Consensus 720 ~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~ 772 (841)
....+......+..|++.+.++.|+.+ ...+.|.+.++...
T Consensus 341 ---------~~~~~~~h~~~v~~~~~s~dg~~l~s~---~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 341 ---------KQVDIPAHDTRVLYSALSPDGRILSTA---ASDENLKFWRVYDG 381 (401)
T ss_dssp ---------EEEEEECCSSCCCEEEECTTSSEEEEE---CTTSEEEEEECCC-
T ss_pred ---------eEEEecCCCCCEEEEEECCCCCEEEEE---eCCCcEEEEECCCC
Confidence 111233455678999999988777766 35689999998654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.33 E-value=0.15 Score=54.33 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=45.1
Q ss_pred CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 443 l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
......++++|...+|+.... .+.|...++.......... ..-.....+++.+.+. ++.+- ..+.|...+
T Consensus 202 ~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 202 CGWVHGVCFSANGSRVAWVSH---DSTVCLADADKKMAVATLA-----SETLPLLAVTFITESS-LVAAG-HDCFPVLFT 271 (372)
T ss_dssp SSCEEEEEECSSSSEEEEEET---TTEEEEEEGGGTTEEEEEE-----CSSCCEEEEEEEETTE-EEEEE-TTSSCEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeC---CCEEEEEECCCCceeEEEc-----cCCCCeEEEEEecCCC-EEEEE-eCCeEEEEE
Confidence 346788999988667666653 4678777775433333333 2334568899986544 44444 566777776
Q ss_pred cCC
Q psy14257 523 YDG 525 (841)
Q Consensus 523 ~dG 525 (841)
++.
T Consensus 272 ~~~ 274 (372)
T 1k8k_C 272 YDS 274 (372)
T ss_dssp EET
T ss_pred ccC
Confidence 655
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.075 Score=57.14 Aligned_cols=127 Identities=12% Similarity=0.125 Sum_probs=74.4
Q ss_pred CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeec
Q psy14257 669 FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~ 748 (841)
..+.+|+|.|..+.++.+-...+.|+..++.... ....+......+..|++.+.
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--------------------------~~~~~~~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--------------------------SAQTSAVHSQNITGLAYSYH 280 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--------------------------GCEEECCCSSCEEEEEECSS
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCc--------------------------EeEEEeccceeEEEEEEcCC
Confidence 3467899999887777766577889888876544 11223334556788999888
Q ss_pred CCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCceEEE
Q psy14257 749 AQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV 828 (841)
Q Consensus 749 ~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~~~l 828 (841)
++++..+- ...++|.+.+++.......+.. -....+|+..|..+.++.+-.....-+|......|....+|
T Consensus 281 ~~~~lasg--s~D~~i~iwd~~~~~~~~~~~H-------~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 281 SSPFLASI--SEDCTVAVLDADFSEVFRDLSH-------RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp SSCCEEEE--ETTSCEEEECTTSCEEEEECCC-------SSCEEEEEECSSSTTEEEEEETTSCEEEEECC---------
T ss_pred CCCEEEEE--eCCCEEEEEECCCCcEeEECCC-------CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence 77666652 3567899999876533222222 25688999999767666654433212344444455555555
Q ss_pred ec
Q psy14257 829 VS 830 (841)
Q Consensus 829 ~~ 830 (841)
..
T Consensus 352 ~~ 353 (357)
T 4g56_B 352 AT 353 (357)
T ss_dssp --
T ss_pred CC
Confidence 44
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.29 E-value=0.28 Score=52.75 Aligned_cols=299 Identities=10% Similarity=-0.071 Sum_probs=155.1
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCc----ccceEEEEeCCCCCccceEEeee----cCc-eeEEEeeecC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNS----LSNIDVVVQTGLSTAEGLAVDWI----GKN-LYMFWAFWSL 320 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~----~~~~~~~~~~~l~~p~giavD~~----~~~-~y~~~td~~~ 320 (841)
.+.+++|.. . ++++-..++.|...++..+. .. ....+...-.....+++.+. +.+ -+++..
T Consensus 18 ~i~~~~~~~---~--~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~---- 87 (397)
T 1sq9_A 18 DIFSVSACN---S--FTVSCSGDGYLKVWDNKLLDNENPKD-KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT---- 87 (397)
T ss_dssp CEEEEEECS---S--EEEEEETTSEEEEEESBCCTTCCGGG-GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE----
T ss_pred CeEEEEecC---C--eEEEEcCCCEEEEEECCCcccccCCC-cceEEecCCCcEEEEEEecccccCCccccEEEEE----
Confidence 456777755 2 56666677888888876553 11 12223333334566777664 200 222222
Q ss_pred CCCCCCCCCEEEEccCCCcc------ccccccC----cCCCceEEEE----ccCCE-EEEEeCCCCeEEEEEecC-----
Q psy14257 321 SPSNSSDGGIEKAGMHGENR------SPLVTKN----IQWPSSLVID----YNQDI-LYWCDSHLNTVESVRVDG----- 380 (841)
Q Consensus 321 ~~~~~~~~~I~~~~~dG~~~------~~l~~~~----~~~P~glavD----~~~~~-lYwaD~~~~~I~~~~ldG----- 380 (841)
..++.|..+++..... ..+.... -.....+++. +.++. |+.+ ...+.|...++..
T Consensus 88 ----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 88 ----SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-DVKGTTYIWKFHPFADES 162 (397)
T ss_dssp ----ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-ETTSCEEEEEEESSSSHH
T ss_pred ----cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-eCCCcEEEEeCCcccccc
Confidence 2346788888765442 2221111 2567789999 77777 5544 4567788888765
Q ss_pred --CccE-----EEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecC---C---CCCce
Q psy14257 381 --SERT-----VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG---D---MESPR 447 (841)
Q Consensus 381 --~~~~-----~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~---~---l~~P~ 447 (841)
.... .+......... .......++|....++++-...+.|.+.++........+.. . .....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMT-----PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSS-----SCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred ccceeeccCcceeeeeeccccC-----CCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence 2222 22110000000 00011233443222666666778999999875443333333 2 45678
Q ss_pred eEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC--------CCCCCceeEEEeccCCEEEEEeCCCCeEE
Q psy14257 448 AIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT--------SRGAWPNGLTLDYQLTRIYWIDAKSDSIH 519 (841)
Q Consensus 448 giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~--------~~~~~P~glalD~~~~~LYw~d~~~~~I~ 519 (841)
.|+++|...+|+........+.|...++............... ..-.....+++.+.+..|+.+. ..+.|.
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~ 316 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLR 316 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEE
Confidence 9999998666665543200157777777543322222200000 0234567899987666665444 567899
Q ss_pred EEEcCCCeeEEEEc------CC------C-------CCCcceEEEEecC-----------eEEEEeCCCCeEEEEeccCC
Q psy14257 520 TVTYDGKDHHVVLS------NH------D-------SLTHPFAIALFEN-----------HVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 520 ~~~~dG~~~~~i~~------~~------~-------~l~~P~gla~~~~-----------~lY~td~~~~~i~~~~~~~g 569 (841)
..++........+. .. + .-....++++..+ .++++-...+.|...+..+|
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99987554433333 11 0 0123467777544 46666656677766665444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.089 Score=57.28 Aligned_cols=275 Identities=10% Similarity=0.010 Sum_probs=150.1
Q ss_pred EEEEecCCCcEEEEccCCceEE----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC--------CcEE
Q psy14257 415 LYWVESNLDQIEVAKLSGQFRR----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE--------HRSV 482 (841)
Q Consensus 415 LY~tD~~~~~I~v~~~~G~~~~----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~--------~~~~ 482 (841)
+.++-...+.|.+.+++..... ..+........+|+++|.++.++.+-.. .+.|...+++.. ....
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~--dg~v~vw~~~~~~~~~~~~~~~~~ 126 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE--DCTVMVWEIPDGGLVLPLREPVIT 126 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET--TSEEEEEECCTTCCSSCBCSCSEE
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC--CCeEEEEEccCCCCccccCCceEE
Confidence 3344455678888887543221 1122233456899999944444444433 456666666432 2223
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEE--cCCCCCCcceEEEEe-cCeEEEEeCCCC
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVL--SNHDSLTHPFAIALF-ENHVYWTDWRTN 559 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~--~~~~~l~~P~gla~~-~~~lY~td~~~~ 559 (841)
+ . ..-.....+++.+.+.+++++-...+.|...++........+ ..+ -.....+++. ++.++++-...+
T Consensus 127 ~-~-----~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~ 198 (402)
T 2aq5_A 127 L-E-----GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH--PDTIYSVDWSRDGALICTSCRDK 198 (402)
T ss_dssp E-E-----CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC--CSCEEEEEECTTSSCEEEEETTS
T ss_pred e-c-----CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC--CCceEEEEECCCCCEEEEEecCC
Confidence 2 2 234567889998776556666556788999998766544444 222 2344677774 454555545567
Q ss_pred eEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeE
Q psy14257 560 SVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFI 639 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l 639 (841)
.|...+..+++....+...... .... .....|+ ..+|
T Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~------------------~~~~----------~~~~~~~---------------~~~l 235 (402)
T 2aq5_A 199 RVRVIEPRKGTVVAEKDRPHEG------------------TRPV----------HAVFVSE---------------GKIL 235 (402)
T ss_dssp EEEEEETTTTEEEEEEECSSCS------------------SSCC----------EEEECST---------------TEEE
T ss_pred cEEEEeCCCCceeeeeccCCCC------------------Ccce----------EEEEcCC---------------CcEE
Confidence 7877776665544333111000 0000 0011111 2233
Q ss_pred Eee----cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeec
Q psy14257 640 IFS----RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYL 715 (841)
Q Consensus 640 ~~~----~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 715 (841)
+.+ ....|+..++..... ............+..++|++.++.||.+....+.|+..++.....-
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----------- 303 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEE-PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----------- 303 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSS-CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----------
T ss_pred EEeccCCCCceEEEEcCccccC-CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----------
Confidence 333 344566666654322 1112223334567899999999999999877889999988764400
Q ss_pred ccccccccccCceEEEEe-eCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc
Q psy14257 716 TPLSKRSSIVGGQIQLVV-DAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE 772 (841)
Q Consensus 716 ~~~~~~~~~~~~~~~~i~-~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~ 772 (841)
...+. -..-..+.+|++.+.+..+.-. ...+.+.++...
T Consensus 304 -------------~~~l~~~~~~~~v~~~~~sp~~~~~~s~-----~~~~~~~~l~~~ 343 (402)
T 2aq5_A 304 -------------LHYLSMFSSKESQRGMGYMPKRGLEVNK-----CEIARFYKLHER 343 (402)
T ss_dssp -------------EEEEEEECCSSCCSEEEECCGGGSCGGG-----TEEEEEEEEETT
T ss_pred -------------eEeecccccCCcccceEEecccccceec-----ceeEEEEEcCCC
Confidence 00111 1133567889988776554322 236777777554
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.041 Score=60.06 Aligned_cols=130 Identities=8% Similarity=-0.065 Sum_probs=74.6
Q ss_pred eEEEEecCCCcEEEEccCCc-eEEEEecCC-CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc-EEEEEecccC
Q psy14257 414 NLYWVESNLDQIEVAKLSGQ-FRRTLIAGD-MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR-SVIVRVDLLT 490 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~-~~~~l~~~~-l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~-~~i~~~~~~~ 490 (841)
+++++-...+.|.+.++... ....+.... -..+..+++.|.+.+|+..-.......|...++..... ..+...
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~---- 264 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL---- 264 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC----
T ss_pred CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec----
Confidence 33344444567777776543 333331222 22478899998744444331111256788888765332 222221
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe--eEEEEcCCCCCCcceEEEEec
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD--HHVVLSNHDSLTHPFAIALFE 548 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~--~~~i~~~~~~l~~P~gla~~~ 548 (841)
..-.....+++++.+..||++-...+.|...++.... ...+.... .-....++++..
T Consensus 265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp 323 (402)
T 2aq5_A 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMP 323 (402)
T ss_dssp CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECC
T ss_pred cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEec
Confidence 2334578899999889999888777889999988655 44433221 113346777754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.23 E-value=0.014 Score=64.64 Aligned_cols=252 Identities=8% Similarity=0.031 Sum_probs=143.0
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCC--------cccceEEEEeCCCCCccceEEeeecCceeEEEeeecC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGN--------SLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSL 320 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~--------~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~ 320 (841)
..+..+.|....+. ++.+-...+.|...++... .. .....+...-..+.+|++.+.+.. +++-
T Consensus 129 ~~v~~l~~~p~~~~--~lat~~~dg~V~vwd~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~-~l~s----- 199 (430)
T 2xyi_A 129 GEVNRARYMPQNAC--VIATKTPSSDVLVFDYTKHPSKPEPSGEC-QPDLRLRGHQKEGYGLSWNPNLNG-YLLS----- 199 (430)
T ss_dssp SCCSEEEEETTEEE--EEEEECSSSCEEEEEGGGSCSSCCTTCCC-CCSEEEECCSSCCCCEEECTTSTT-EEEE-----
T ss_pred CcEEEEEECCCCCc--EEEEECCCCcEEEEECCCcccccCccccC-CCcEEecCCCCCeEEEEeCCCCCC-eEEE-----
Confidence 34566677664333 6666667788888877541 11 122223333345666777665432 3321
Q ss_pred CCCCCCCCCEEEEccCCCcc-cc------ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCc-cEEEEeeeee
Q psy14257 321 SPSNSSDGGIEKAGMHGENR-SP------LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSE-RTVSFNLEVL 392 (841)
Q Consensus 321 ~~~~~~~~~I~~~~~dG~~~-~~------l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~-~~~~~~~~~~ 392 (841)
...++.|..+++..... .. .....-.....|++.+.++.++++....+.|...++.... .+.+....
T Consensus 200 ---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-- 274 (430)
T 2xyi_A 200 ---ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-- 274 (430)
T ss_dssp ---ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE--
T ss_pred ---EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee--
Confidence 23467888888765211 11 1112334567899988788888888889999999987542 11111110
Q ss_pred cCCCccccCCCCCCcccc--ccceEEEEecCCCcEEEEccCC-ce-EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCC
Q psy14257 393 GSDSRVGIPNCRPEDNLW--IGKNLYWVESNLDQIEVAKLSG-QF-RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAP 468 (841)
Q Consensus 393 ~~~~~~~i~~~~~~avdw--~~~~LY~tD~~~~~I~v~~~~G-~~-~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~ 468 (841)
..... ...+.| .+..++++-...+.|.+.++.. .. ..++ .........|+++|...+++.+......-
T Consensus 275 ~~~~~-------v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 275 AHTAE-------VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp CCSSC-------EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred cCCCC-------eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 00000 012222 2356888888888999999875 22 3333 23345678999999877777776552233
Q ss_pred eEEEecCCCCCc----------EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 469 RIERCSMSGEHR----------SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 469 ~I~r~~ldG~~~----------~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
+|+.....+... ..+... ...-..+..+++.+.+..++++-...+.|...+++.
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIH---GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEEC---CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEEeCCCCccccCccccccCCcceEEEc---CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 444444322211 222221 023346889999976664776766678888877654
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=9.8e-05 Score=69.24 Aligned_cols=50 Identities=32% Similarity=0.620 Sum_probs=43.7
Q ss_pred CCCCCC---CCccc---ccccccCCCCCC-CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 121 ACFNGE---DEMFC---DEKQCLRSDCHH-DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 121 ~C~~g~---de~~C---~eC~~~~~~C~~-~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
.|+.|| ++..| +||...++.|++ .|+|++++|+|.|++||.+..++++|.
T Consensus 91 ~C~~Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~ 147 (147)
T 2w86_A 91 ICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147 (147)
T ss_dssp TTCTTEEEEETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred cCCCccccCCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence 899999 46678 789876778975 899999999999999999999998874
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.21 Score=59.20 Aligned_cols=299 Identities=7% Similarity=0.019 Sum_probs=153.3
Q ss_pred CCCCeEEEEecCC--CCCeEEEecCCCCCcEEEEEecccC-CCCCCceeEEEeccCCEEEEEeCCCC----eEEEEEcCC
Q psy14257 453 PRFGLLFWTDWDS--KAPRIERCSMSGEHRSVIVRVDLLT-SRGAWPNGLTLDYQLTRIYWIDAKSD----SIHTVTYDG 525 (841)
Q Consensus 453 ~~~g~Ly~td~~~--~~~~I~r~~ldG~~~~~i~~~~~~~-~~~~~P~glalD~~~~~LYw~d~~~~----~I~~~~~dG 525 (841)
|.++++|++-... ..+.|++.+.++...+++++..... ..-..-.++++.+++++|.++-...+ .|+..++++
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 5677888775332 2347899998777677666521110 11112457889988888877643322 899999988
Q ss_pred CeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCC---------------eEEEEeccCCcce-EEEecccCCCceecc
Q psy14257 526 KDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTN---------------SVIRANKWNGSDV-TLIQRTLTQPFIYVN 587 (841)
Q Consensus 526 ~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~---------------~i~~~~~~~g~~~-~~i~~~~~~p~~~h~ 587 (841)
.......... . ...++++. +..||++..... .|++.+..++... .++.....
T Consensus 161 g~~~~~~~~~--~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~------- 230 (710)
T 2xdw_A 161 AKELPDVLER--V-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD------- 230 (710)
T ss_dssp TEEEEEEEEE--E-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-------
T ss_pred CCCCcccccC--c-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC-------
Confidence 7654322111 1 12356663 456777653321 2443333332211 11110000
Q ss_pred CCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeec------CCeEEEEecCC------C
Q psy14257 588 GVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSR------PREIRGVDLEH------P 655 (841)
Q Consensus 588 qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~------~~~i~~~~l~~------~ 655 (841)
...+. .+....+| ..+|+++. ...|+.++++. +
T Consensus 231 -----------------------~~~~~----~~~~~SpD--------g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 231 -----------------------EPKWM----GGAELSDD--------GRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp -----------------------CTTCE----EEEEECTT--------SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred -----------------------CCeEE----EEEEEcCC--------CCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 00000 00111122 23343332 34677777754 2
Q ss_pred CccccceeecCCCCCceEEEEecCCCEEEEEECC---CCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEE
Q psy14257 656 YYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQE---YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLV 732 (841)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~---~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 732 (841)
.. ....+... ... ..-.+++..+.||+.... ...|+++++++...+ ..+.+
T Consensus 276 ~~-~~~~l~~~-~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-----------------------~~~~l 329 (710)
T 2xdw_A 276 IL-KWVKLIDN-FEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-----------------------KWKVL 329 (710)
T ss_dssp SC-CCEEEECS-SSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----------------------GCEEE
T ss_pred cc-ceEEeeCC-CCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------------------cceec
Confidence 11 11122111 111 222467778999988643 347888888764300 01233
Q ss_pred eeCCC-CCcceeEEeecCCcEEEEecCCCCCeEEEEec-CCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecC-
Q psy14257 733 VDAGI-SHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL-EGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT- 809 (841)
Q Consensus 733 ~~~~~-~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l-~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~- 809 (841)
+...- ..+.++++.. .+.|+++..+....+|.+.++ +|+..+.+... .....++++.|....|+++-.+
T Consensus 330 ~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-------~~~v~~~~~s~d~~~l~~~~ss~ 401 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-------VGSVVGYSGQKKDTEIFYQFTSF 401 (710)
T ss_dssp ECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-------SSEEEEEECCTTCSEEEEEEECS
T ss_pred cCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-------CceEEEEecCCCCCEEEEEEeCC
Confidence 33211 1344455442 667877754445567888888 67644444322 2356677888876677766443
Q ss_pred CCcceEEEEecCCCc--eEEEec
Q psy14257 810 KQVVTIEMAFMDGTK--RETVVS 830 (841)
Q Consensus 810 ~~~~~I~~~~~dG~~--~~~l~~ 830 (841)
..+++|.+.+++... .+++..
T Consensus 402 ~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 402 LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp SCCCEEEEEETTSSSCCCEEEEE
T ss_pred CCCCEEEEEECCCCccceEEeee
Confidence 233689999987666 565554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.44 Score=52.68 Aligned_cols=255 Identities=11% Similarity=0.018 Sum_probs=125.7
Q ss_pred CceeEEEeccCCEEEEEeCCCCeEEEEEcC--C-CeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCC
Q psy14257 495 WPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--G-KDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 495 ~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G-~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g 569 (841)
....+++.+.+..|+.+-...+.|...++. . ...+.+... ..-..+.+|++. +.+|+.++. .+.|+.++..++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~~ 181 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-CFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINSI 181 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTSC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-cCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCCc
Confidence 467899998888877776667888888877 3 444444321 112345778874 345655543 566766665544
Q ss_pred cceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeec-CCeEE
Q psy14257 570 SDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSR-PREIR 648 (841)
Q Consensus 570 ~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~-~~~i~ 648 (841)
......... +.-| .+...|. .+.+|. ....+|+.+. ...|+
T Consensus 182 ~~~~~~~~~----~~~h------------------------~~~v~~~-----~~sp~~-----~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 182 PEEKFTQEP----ILGH------------------------VSMLTDV-----HLIKDS-----DGHQFIITSDRDEHIK 223 (450)
T ss_dssp CCSSCCCCC----SEEC------------------------SSCEEEE-----EEEECT-----TSCEEEEEEETTSCEE
T ss_pred cccccccee----eecc------------------------cCceEEE-----EEcCCC-----CCCcEEEEEcCCCcEE
Confidence 321100000 0000 0001111 111110 0022344433 34566
Q ss_pred EEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCce
Q psy14257 649 GVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQ 728 (841)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (841)
..++..... +..+.......+.+++|. ..+.|+... ..++|+..++........+.... ...++.... ...
T Consensus 224 vwd~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~---~~~ 294 (450)
T 2vdu_B 224 ISHYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNLSTFDYNS--LIKPYLNDQ---HLA 294 (450)
T ss_dssp EEEESCTTC--EEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEEEEEECHH--HHGGGCCTT---SBC
T ss_pred EEECCCCce--eeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEeeeecchh--hhhhhhhhc---ccc
Confidence 666653321 111111223457889998 666666555 67899999887654111110000 000000000 000
Q ss_pred EEEEe----eCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec--CCcc--e-EEEEcCCCCCCCcCCCceEEEEeCC
Q psy14257 729 IQLVV----DAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL--EGEY--Q-TTILSNESNDTSTLSKISSIAVWPV 799 (841)
Q Consensus 729 ~~~i~----~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l--~g~~--~-~~~~~~~~~~~~~l~~p~~iavd~~ 799 (841)
...+. ...-..+.+|++.+.++.||.+. ...+.|.++++ .... . ...+.. -..+.+|+++|.
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~~d~~i~iw~~~~~~~~~l~~~~~~~~-------~~~v~~~~~~~~ 365 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV--EATKCIIILEMSEKQKGDLALKQIITF-------PYNVISLSAHND 365 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEE--TTCSEEEEEEECSSSTTCEEEEEEEEC-------SSCEEEEEEETT
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEE--CCCCeEEEEEeccCCCCceeeccEecc-------CCceEEEEecCC
Confidence 00000 01123567888888888999883 35789999999 3221 1 111223 258999999993
Q ss_pred CCeEEEEecC
Q psy14257 800 KGKMFWSNVT 809 (841)
Q Consensus 800 ~g~lyw~d~~ 809 (841)
.+|.+-..
T Consensus 366 --~~~v~~~~ 373 (450)
T 2vdu_B 366 --EFQVTLDN 373 (450)
T ss_dssp --EEEEEECC
T ss_pred --cEEEEEec
Confidence 55555443
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00039 Score=64.70 Aligned_cols=54 Identities=26% Similarity=0.699 Sum_probs=44.4
Q ss_pred ccCCCCCeEec---------CCCCCCCCCCCCCCCCCccc----ccccccCCCCC--CCcccCCCCcEEecCCCce
Q psy14257 101 DCQDVLRTCIP---------KALVCDGEPACFNGEDEMFC----DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMY 161 (841)
Q Consensus 101 ~C~~~~~~Ci~---------~~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~ 161 (841)
.|.++ +.|+. .++.| .|+.||.+..| ++|.. .+|. ..|.++.++|+|.|++||.
T Consensus 59 ~C~~~-g~C~~~~~~~~~~~~~~~C----~C~~G~~G~~C~~~i~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~ 127 (143)
T 4d90_A 59 PCHNG-GTCEISEAYRGDTFIGYVC----KCPRGFNGIHCQHNINECEV--EPCKNGGICTDLVANYSCECPGEFM 127 (143)
T ss_dssp CCCTT-CEEEECCCEETTEECCEEE----ECCTTEESTTSCEECCTTTT--CCSCTTCEEEEETTEEEEECCTTCB
T ss_pred CCCCC-CEecCCCccccCCCCCeEe----ECcCCCcCCCcccCCCcCCC--CCCCCCCEeECCCCCeEeECCCCCc
Confidence 58777 88982 37789 99999988888 67863 4574 4899999999999999997
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.1 Score=61.83 Aligned_cols=245 Identities=9% Similarity=0.047 Sum_probs=141.0
Q ss_pred eecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccccc-Cc-----CCCceEEEEccCCEEEEEeCCCC----eEEE
Q psy14257 306 WIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTK-NI-----QWPSSLVIDYNQDILYWCDSHLN----TVES 375 (841)
Q Consensus 306 ~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~-~~-----~~P~glavD~~~~~lYwaD~~~~----~I~~ 375 (841)
+.++.+|+++.+.+ ...+.|++.+.++...+++... .+ ..-.++++.+++++|.++-...+ .|+.
T Consensus 81 ~dG~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v 155 (710)
T 2xdw_A 81 KKGKRYFYFYNTGL-----QNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKF 155 (710)
T ss_dssp EETTEEEEEEECSS-----CSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred EECCEEEEEEEcCC-----ceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 45666777665432 2234788888765555444322 11 12457889999998877654332 8999
Q ss_pred EEecCCccEEEEeeeeecCCCccccCCCCCCccccc--cceEEEEecC---------------CCcEEEEccCCceE--E
Q psy14257 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI--GKNLYWVESN---------------LDQIEVAKLSGQFR--R 436 (841)
Q Consensus 376 ~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~--~~~LY~tD~~---------------~~~I~v~~~~G~~~--~ 436 (841)
++++++..........- ...+.|. ++.||++... ..+|++.++.+... +
T Consensus 156 ~d~~tg~~~~~~~~~~~------------~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 223 (710)
T 2xdw_A 156 MKVDGAKELPDVLERVK------------FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI 223 (710)
T ss_dssp EETTTTEEEEEEEEEEC------------SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE
T ss_pred EECCCCCCCcccccCcc------------cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce
Confidence 99988765543211110 0123343 4567776533 22488888865431 2
Q ss_pred EEecCC--CCCceeEEEcCCCCeEEEEecCCC--CCeEEEecCCC------C--CcEEEEEecccCCCCCCceeEEEecc
Q psy14257 437 TLIAGD--MESPRAIALDPRFGLLFWTDWDSK--APRIERCSMSG------E--HRSVIVRVDLLTSRGAWPNGLTLDYQ 504 (841)
Q Consensus 437 ~l~~~~--l~~P~giavd~~~g~Ly~td~~~~--~~~I~r~~ldG------~--~~~~i~~~~~~~~~~~~P~glalD~~ 504 (841)
.+.... -....+++++|+.++|+++..... ...|+..++++ . ..+.+.. ... ...-.+++.
T Consensus 224 ~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~------~~~-~~~~~~s~d 296 (710)
T 2xdw_A 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID------NFE-GEYDYVTNE 296 (710)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC------SSS-SCEEEEEEE
T ss_pred EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC------CCC-cEEEEEecc
Confidence 222221 123468999999889988865321 46899998874 2 2344432 111 122246667
Q ss_pred CCEEEEEeCC---CCeEEEEEcCCCe---eEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCC--eEEEEeccCCcceEEE
Q psy14257 505 LTRIYWIDAK---SDSIHTVTYDGKD---HHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTN--SVIRANKWNGSDVTLI 575 (841)
Q Consensus 505 ~~~LYw~d~~---~~~I~~~~~dG~~---~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~--~i~~~~~~~g~~~~~i 575 (841)
+++||+.... +.+|..+++++.. .+.+..... -....++++. +++|+++-...+ .|+.++..+|+....+
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE-KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC-CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec
Confidence 8899887543 4589999998764 255554321 1123467777 788888765443 4666665456544333
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.48 Score=51.77 Aligned_cols=274 Identities=14% Similarity=0.052 Sum_probs=146.2
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
.+.++.|.+. +. +..+-..++.|...++..+. . ...+...-.....+++.+.+ + +++ + ...++.
T Consensus 110 ~V~~~~~~p~-~~--~l~s~s~Dg~i~vwd~~~~~--~-~~~l~~h~~~V~~v~~~~~~-~-~l~-s-------gs~D~~ 173 (410)
T 1vyh_C 110 PVTRVIFHPV-FS--VMVSASEDATIKVWDYETGD--F-ERTLKGHTDSVQDISFDHSG-K-LLA-S-------CSADMT 173 (410)
T ss_dssp CEEEEEECSS-SS--EEEEEESSSCEEEEETTTCC--C-CEEECCCSSCEEEEEECTTS-S-EEE-E-------EETTSC
T ss_pred cEEEEEEcCC-CC--EEEEEeCCCeEEEEECCCCc--E-EEEEeccCCcEEEEEEcCCC-C-EEE-E-------EeCCCe
Confidence 4567777664 33 56666677888888776654 1 22233333345567776543 2 222 1 123567
Q ss_pred EEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccc
Q psy14257 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNL 409 (841)
Q Consensus 330 I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avd 409 (841)
|..+++.+..........-.....+++.+.++.|+- -...+.|...++........+.. ....+ ..+.
T Consensus 174 i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s-~s~D~~i~~wd~~~~~~~~~~~~----h~~~v-------~~~~ 241 (410)
T 1vyh_C 174 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS-ASRDKTIKMWEVQTGYCVKTFTG----HREWV-------RMVR 241 (410)
T ss_dssp CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEE-EETTSEEEEEETTTCCEEEEEEC----CSSCE-------EEEE
T ss_pred EEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCcEEEEEeC----CCccE-------EEEE
Confidence 777777654332222233345567888877666654 44567788888754432222110 00000 0011
Q ss_pred c-ccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCC-------------------CeEEEEecCCCCCe
Q psy14257 410 W-IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF-------------------GLLFWTDWDSKAPR 469 (841)
Q Consensus 410 w-~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~-------------------g~Ly~td~~~~~~~ 469 (841)
+ ..+.++++-...+.|.+.++........+.........+++.|.. |.++++-.. .+.
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--D~~ 319 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--DKT 319 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--TSE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--CCe
Confidence 1 125667777777889988886554433343344556788888753 334444433 466
Q ss_pred EEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe-eEEEEcCCCCCCcceEEEEec
Q psy14257 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD-HHVVLSNHDSLTHPFAIALFE 548 (841)
Q Consensus 470 I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~-~~~i~~~~~~l~~P~gla~~~ 548 (841)
|...++.......... ..-....++++++.+..|+ +-...+.|...++.... ..++. .+ -....+|++..
T Consensus 320 i~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~g~~l~-s~s~D~~i~vwd~~~~~~~~~~~-~h--~~~v~~l~~~~ 390 (410)
T 1vyh_C 320 IKMWDVSTGMCLMTLV-----GHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCMKTLN-AH--EHFVTSLDFHK 390 (410)
T ss_dssp EEEEETTTTEEEEEEE-----CCSSCEEEEEECSSSSCEE-EEETTTEEEEECCTTSCCCEEEE-CC--SSCEEEEEECS
T ss_pred EEEEECCCCceEEEEE-----CCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceEEEEc-CC--CCcEEEEEEcC
Confidence 7777765332222222 2334568899987655555 44456788888886543 34443 22 12346677643
Q ss_pred -CeEEEEeCCCCeEE
Q psy14257 549 -NHVYWTDWRTNSVI 562 (841)
Q Consensus 549 -~~lY~td~~~~~i~ 562 (841)
+.+.++-...+.|.
T Consensus 391 ~~~~l~sgs~D~~i~ 405 (410)
T 1vyh_C 391 TAPYVVTGSVDQTVK 405 (410)
T ss_dssp SSSCEEEEETTSEEE
T ss_pred CCCEEEEEeCCCcEE
Confidence 33444444444443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.39 Score=50.63 Aligned_cols=275 Identities=9% Similarity=-0.014 Sum_probs=144.2
Q ss_pred eEEEEecCCCcEEEEccC--CceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 414 NLYWVESNLDQIEVAKLS--GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~--G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
++.++-...+.|.+.+++ +......+.........|+++|...+|+.... .+.|...+++......+..
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~------ 125 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC---DKTAKMWDLSSNQAIQIAQ------ 125 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEEEEE------
T ss_pred eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC---CCcEEEEEcCCCCceeecc------
Confidence 555665666788888887 44443334444567889999997667765553 4678777877554444333
Q ss_pred CCCCceeEEE--eccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCC
Q psy14257 492 RGAWPNGLTL--DYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 492 ~~~~P~glal--D~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g 569 (841)
.-.....+++ .+ +++++++-...+.|...++........+... .....+......++.+.. .+.+...+....
T Consensus 126 ~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 200 (368)
T 3mmy_A 126 HDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP---ERCYCADVIYPMAVVATA-ERGLIVYQLENQ 200 (368)
T ss_dssp CSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECS---SCEEEEEEETTEEEEEEG-GGCEEEEECSSS
T ss_pred ccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecC---CCceEEEecCCeeEEEeC-CCcEEEEEeccc
Confidence 2345678888 54 4455555555678998887654332222221 234455555565555543 334444443222
Q ss_pred cceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEE
Q psy14257 570 SDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRG 649 (841)
Q Consensus 570 ~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~ 649 (841)
......... +.. ....|.+ +..+... .+..++..+....|+.
T Consensus 201 ~~~~~~~~~---~~~---------------------------~~~~~~~-----~~~~~~~---~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 201 PSEFRRIES---PLK---------------------------HQHRCVA-----IFKDKQN---KPTGFALGSIEGRVAI 242 (368)
T ss_dssp CEEEEECCC---SCS---------------------------SCEEEEE-----EEECTTS---CEEEEEEEETTSEEEE
T ss_pred cchhhhccc---ccc---------------------------CCCceEE-----EcccCCC---CCCeEEEecCCCcEEE
Confidence 211111000 000 0001100 0000000 0011333334455666
Q ss_pred EecCCCCc-cccceeecCC-----------CCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccc
Q psy14257 650 VDLEHPYY-HTIPTISIPQ-----------VFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTP 717 (841)
Q Consensus 650 ~~l~~~~~-~~~~~~~~~~-----------~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 717 (841)
.+++.... .....+.... ...+.+++|.|..+.|+... ..+.|+..++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~--------------- 306 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDART--------------- 306 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTE---------------
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCCCc---------------
Confidence 66654322 1111111110 01478999999887777665 67889999887644
Q ss_pred ccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEE
Q psy14257 718 LSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVC 767 (841)
Q Consensus 718 ~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~ 767 (841)
....+......+..|++.+.++.|..+.+|.....+++.
T Consensus 307 -----------~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 307 -----------KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----------EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred -----------EEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 222333445678899999988888888543333333333
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00022 Score=74.84 Aligned_cols=44 Identities=25% Similarity=0.554 Sum_probs=41.1
Q ss_pred cccccc-CCCCCCCcccCCCCcEEecCCCceecCCCCcccccccc
Q psy14257 132 DEKQCL-RSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 132 ~eC~~~-~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
|||... ++.|+|.|.++.++|+|.|++||.|..|+++|...++|
T Consensus 3 ~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c 47 (283)
T 3f1s_B 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 47 (283)
T ss_dssp CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTT
T ss_pred CccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCcccccccc
Confidence 688877 78999999999999999999999999999999998888
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.4 Score=50.73 Aligned_cols=231 Identities=9% Similarity=0.043 Sum_probs=123.5
Q ss_pred CCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCcc--EEEEeeeeecCCCccccCCC
Q psy14257 326 SDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER--TVSFNLEVLGSDSRVGIPNC 403 (841)
Q Consensus 326 ~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~--~~~~~~~~~~~~~~~~i~~~ 403 (841)
.++.|..+++............-.....+++.+.++.|.... ..+.|...++..... +...... +....+
T Consensus 75 ~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~~~~--~h~~~v----- 146 (340)
T 1got_B 75 QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG-LDNICSIYNLKTREGNVRVSRELA--GHTGYL----- 146 (340)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTCSBSCEEEEEEE--CCSSCE-----
T ss_pred CCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEECccCCCcceeEEEec--CCCccE-----
Confidence 345666666543322222222334456788888776665554 457777777754321 1111111 111000
Q ss_pred CCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 404 RPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 404 ~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
..+.|..+..+++-...+.|.+.++........+.........+++.|...+ +.+-.. .+.|...++........
T Consensus 147 --~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sg~~--d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 147 --SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGAC--DASAKLWDVREGMCRQT 221 (340)
T ss_dssp --EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEET--TSCEEEEETTTCSEEEE
T ss_pred --EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE-EEEEeC--CCcEEEEECCCCeeEEE
Confidence 0122222333555566788888888654444334444456789999997554 444433 45666666653333222
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEE
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVI 562 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~ 562 (841)
.. ..-...+.+++.+.+..|+ +-...+.|...++....................+++. .+.++.+-...+.|.
T Consensus 222 ~~-----~h~~~v~~v~~~p~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~ 295 (340)
T 1got_B 222 FT-----GHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp EC-----CCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred Ec-----CCcCCEEEEEEcCCCCEEE-EEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence 22 2334568899987655554 4445678999998765443333222112223556663 456666666667777
Q ss_pred EEeccCCcceEEE
Q psy14257 563 RANKWNGSDVTLI 575 (841)
Q Consensus 563 ~~~~~~g~~~~~i 575 (841)
..+..+++....+
T Consensus 296 vwd~~~~~~~~~~ 308 (340)
T 1got_B 296 VWDALKADRAGVL 308 (340)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEEcccCcEeeEe
Confidence 7776655544433
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.035 Score=58.47 Aligned_cols=207 Identities=12% Similarity=0.117 Sum_probs=120.2
Q ss_pred EEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccc
Q psy14257 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNL 409 (841)
Q Consensus 330 I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avd 409 (841)
|.+.+.+|+.+....... ......+++ ++.||+.. ..+.|.+++.+|..+.... .. ...... ..++
T Consensus 80 l~~~d~~g~~~~~~~~~~-~~~~~~~~~--~~~l~v~t-~~~~l~~~d~~g~~~~~~~-~~---~~~~~~------~~~~ 145 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTKK-AIVSDFTIF--EDILYVTS-MDGHLYAINTDGTEKWRFK-TK---KAIYAT------PIVS 145 (330)
T ss_dssp EEEECCCGGGGGGSCC------CCEEEE--TTEEEEEC-TTSEEEEECTTSCEEEEEE-CS---SCCCSC------CEEC
T ss_pred EEEECCCCcEEEEEECCC-CcccCceEE--CCEEEEEe-cCCEEEEEcCCCCEEEEEc-CC---Cceeee------eEEc
Confidence 888888776554443221 112344554 67777664 4578888888854322221 10 000000 0111
Q ss_pred cccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEeccc
Q psy14257 410 WIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489 (841)
Q Consensus 410 w~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~ 489 (841)
..++||+.. ..+.|..++.+|+....... .......+++|+ +|.||++. ..|++.+.+|.......
T Consensus 146 -~~g~l~vgt-~~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~d~-~g~l~v~t-----~~l~~~d~~g~~~~~~~----- 211 (330)
T 3hxj_A 146 -EDGTIYVGS-NDNYLYAINPDGTEKWRFKT-NDAITSAASIGK-DGTIYFGS-----DKVYAINPDGTEKWNFY----- 211 (330)
T ss_dssp -TTSCEEEEC-TTSEEEEECTTSCEEEEEEC-SSCCCSCCEECT-TCCEEEES-----SSEEEECTTSCEEEEEC-----
T ss_pred -CCCEEEEEc-CCCEEEEECCCCCEeEEEec-CCCceeeeEEcC-CCEEEEEe-----CEEEEECCCCcEEEEEc-----
Confidence 136777754 34788999988665443322 223456778875 47788876 47888886554332221
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccC
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~ 568 (841)
........+++|. +++||++.. .+.|.+++.+|.....+.... ..+..+.+. ++.||++.. .+.|+++++ +
T Consensus 212 -~~~~~~~~~~~~~-~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~v~t~-~ggl~~~d~-~ 283 (330)
T 3hxj_A 212 -AGYWTVTRPAISE-DGTIYVTSL-DGHLYAINPDGTEKWRFKTGK---RIESSPVIGNTDTIYFGSY-DGHLYAINP-D 283 (330)
T ss_dssp -CSSCCCSCCEECT-TSCEEEEET-TTEEEEECTTSCEEEEEECSS---CCCSCCEECTTSCEEEECT-TCEEEEECT-T
T ss_pred -cCCcceeceEECC-CCeEEEEcC-CCeEEEECCCCCEeEEeeCCC---CccccceEcCCCeEEEecC-CCCEEEECC-C
Confidence 1224467888884 578888765 568999988887665554332 123345665 688988865 457888886 5
Q ss_pred Ccce
Q psy14257 569 GSDV 572 (841)
Q Consensus 569 g~~~ 572 (841)
|+..
T Consensus 284 g~~~ 287 (330)
T 3hxj_A 284 GTEK 287 (330)
T ss_dssp SCEE
T ss_pred CcEE
Confidence 5533
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.08 E-value=0.051 Score=60.06 Aligned_cols=244 Identities=7% Similarity=0.002 Sum_probs=141.1
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC--------ccccc--cccCcCCCceEEEEccCCEEEEE
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE--------NRSPL--VTKNIQWPSSLVIDYNQDILYWC 366 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~--------~~~~l--~~~~~~~P~glavD~~~~~lYwa 366 (841)
..+..+++.+.++++++.. ..++.|..+++... ....+ ....-....+|++++.+..++++
T Consensus 129 ~~v~~l~~~p~~~~~lat~---------~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATK---------TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp SCCSEEEEETTEEEEEEEE---------CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred CcEEEEEECCCCCcEEEEE---------CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 3566677765322333322 23457777776531 01111 12234456889999887756666
Q ss_pred eCCCCeEEEEEecCCcc--EEEEeeeee-cCCCccccCCCCCCccccc--cceEEEEecCCCcEEEEccCCc----eEEE
Q psy14257 367 DSHLNTVESVRVDGSER--TVSFNLEVL-GSDSRVGIPNCRPEDNLWI--GKNLYWVESNLDQIEVAKLSGQ----FRRT 437 (841)
Q Consensus 367 D~~~~~I~~~~ldG~~~--~~~~~~~~~-~~~~~~~i~~~~~~avdw~--~~~LY~tD~~~~~I~v~~~~G~----~~~~ 437 (841)
-...+.|...++..... ..+.....+ .... ...++.|. +++++++....+.|.+.++... ....
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-------~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-------VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-------CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCC-------CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 67788899988875221 111111111 0100 01133343 4778888888899999998743 2223
Q ss_pred EecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-CC-cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCC
Q psy14257 438 LIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-EH-RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515 (841)
Q Consensus 438 l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-~~-~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~ 515 (841)
+ ...-..++.|+++|...+++++-.. .+.|...++.. .. ...+ . ..-.....+++.+.+..++.+-...
T Consensus 273 ~-~~~~~~v~~i~~~p~~~~~l~tg~~--dg~v~vwd~~~~~~~~~~~-~-----~h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 273 V-DAHTAEVNCLSFNPYSEFILATGSA--DKTVALWDLRNLKLKLHSF-E-----SHKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp E-ECCSSCEEEEEECSSCTTEEEEEET--TSEEEEEETTCTTSCSEEE-E-----CCSSCEEEEEECSSCTTEEEEEETT
T ss_pred e-ecCCCCeEEEEeCCCCCCEEEEEeC--CCeEEEEeCCCCCCCeEEe-e-----cCCCCEEEEEECCCCCCEEEEEeCC
Confidence 2 2334568999999987777777654 56788887764 22 3333 2 2344678899998777788887777
Q ss_pred CeEEEEEcCCCee------------EEEEcCCCCCCcceEEEEec-Ce-EEEEeCCCCeEEEEe
Q psy14257 516 DSIHTVTYDGKDH------------HVVLSNHDSLTHPFAIALFE-NH-VYWTDWRTNSVIRAN 565 (841)
Q Consensus 516 ~~I~~~~~dG~~~------------~~i~~~~~~l~~P~gla~~~-~~-lY~td~~~~~i~~~~ 565 (841)
+.|...++..... ..+......-..+..+++.. +. ++++-...+.|...+
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 8888888865110 11221111133577888743 33 676666666655444
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.98 E-value=0.048 Score=65.15 Aligned_cols=121 Identities=11% Similarity=0.093 Sum_probs=67.0
Q ss_pred ceeEEEcCCCCeE-EEEecCCCCCeEEEecCCCCC-------cEEEEEecccCCCCC--CceeEEEeccCCEEE-EEeC-
Q psy14257 446 PRAIALDPRFGLL-FWTDWDSKAPRIERCSMSGEH-------RSVIVRVDLLTSRGA--WPNGLTLDYQLTRIY-WIDA- 513 (841)
Q Consensus 446 P~giavd~~~g~L-y~td~~~~~~~I~r~~ldG~~-------~~~i~~~~~~~~~~~--~P~glalD~~~~~LY-w~d~- 513 (841)
...++..|++..+ ++.........|+..++++.. ...+..... ..-+. .+..+++.++++.|+ |.-.
T Consensus 262 ~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~ 340 (740)
T 4a5s_A 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDGNSFYKIISNE 340 (740)
T ss_dssp EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCCCEEEEEEEcC
Confidence 4567788875533 344433223468888876544 222222100 01111 144677887777776 6632
Q ss_pred -CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCC------CCeEEEEeccCC
Q psy14257 514 -KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWR------TNSVIRANKWNG 569 (841)
Q Consensus 514 -~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~------~~~i~~~~~~~g 569 (841)
+...|+.++++|...+.+..+......+. .+.+++||++... ...|++++..++
T Consensus 341 ~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~--~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 341 EGYRHICYFQIDKKDCTFITKGTWEVIGIE--ALTSDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp TSCEEEEEEETTCSSCEESCCSSSCEEEEE--EECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred CCceEEEEEECCCCceEecccCCEEEEEEE--EEeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 34589999999987766554321122222 2457889988754 246777775443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.5 Score=55.77 Aligned_cols=152 Identities=9% Similarity=0.028 Sum_probs=89.3
Q ss_pred CeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECC---CCeEEEEEcccCceeeeeeeeeeeeccccccc
Q psy14257 645 REIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQE---YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKR 721 (841)
Q Consensus 645 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~---~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 721 (841)
+.|+.++++.+..... .+.. ........ +++..+.+|+.... +.+|+++++++...+
T Consensus 259 ~~i~~~d~~~~~~~~~-~l~~-~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~----------------- 318 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLL-TVQG-DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA----------------- 318 (693)
T ss_dssp CEEEEEETTSTTCCCE-EEEC-SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----------------
T ss_pred cEEEEEECCCCCCceE-EEeC-CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------------
Confidence 4778888765532211 1111 11111222 56667888887533 468999988765410
Q ss_pred ccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEc-CCCCCCCcCCCceEEEEeCCC
Q psy14257 722 SSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILS-NESNDTSTLSKISSIAVWPVK 800 (841)
Q Consensus 722 ~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~-~~~~~~~~l~~p~~iavd~~~ 800 (841)
+.+.++...-. .. .+++.++.|+++..+....+|.+.+++|...+.+.- . .....+++.++..
T Consensus 319 ------~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~-------~~~~~~~~~~~d~ 382 (693)
T 3iuj_A 319 ------HWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPG-------LGSVSGFNGKHDD 382 (693)
T ss_dssp ------GCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSS-------SSEEEECCCCTTC
T ss_pred ------ccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCC-------CceEEeeecCCCC
Confidence 01344443222 22 677779999888544455689999999876554432 2 2234455566677
Q ss_pred CeEEEEecC-CCcceEEEEecCCCceEEEecCC
Q psy14257 801 GKMFWSNVT-KQVVTIEMAFMDGTKRETVVSQK 832 (841)
Q Consensus 801 g~lyw~d~~-~~~~~I~~~~~dG~~~~~l~~~~ 832 (841)
..|+.+-.. ..+++|.+.++++...++|....
T Consensus 383 ~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~ 415 (693)
T 3iuj_A 383 PALYFGFENYAQPPTLYRFEPKSGAISLYRASA 415 (693)
T ss_dssp SCEEEEEECSSSCCEEEEECTTTCCEEEEECCC
T ss_pred CEEEEEecCCCCCCEEEEEECCCCeEEEEEeCC
Confidence 777776543 23368999999887777766543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.87 E-value=0.51 Score=50.62 Aligned_cols=273 Identities=10% Similarity=-0.026 Sum_probs=139.2
Q ss_pred cccccccccccc-------EEEEeccccceeeeccccc---CC---cceeEEEecCCCeEEEEEecCCcccce--EEEEe
Q psy14257 229 HELRGVDLRTFN-------VIALISSLKNTIALDFYYT---PT---ANMVFWTDVIDDKIYNATLIGNSLSNI--DVVVQ 293 (841)
Q Consensus 229 ~~I~~~~~~~~~-------~~~l~~~~~~~~avd~~~~---~~---~~~lyw~d~~~~~I~~~~~~~~~~~~~--~~~~~ 293 (841)
..|+..++.... ...+......+.++.|... .+ . ++++-...+.|...++..+..... ...+.
T Consensus 36 g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 113 (397)
T 1sq9_A 36 GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVATTSFSGDLLFYRITREDETKKVIFEKLD 113 (397)
T ss_dssp SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEEEEETTSCEEEEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEEEEcCCCCEEEEEccCCcccccccceeec
Confidence 445555554433 3344333344677777765 12 3 455555678888887765541000 11222
Q ss_pred CC-----CCCccceEEe----eecCceeEEEeeecCCCCCCCCCCEEEEccCC-------Cccc-----ccc------cc
Q psy14257 294 TG-----LSTAEGLAVD----WIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG-------ENRS-----PLV------TK 346 (841)
Q Consensus 294 ~~-----l~~p~giavD----~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG-------~~~~-----~l~------~~ 346 (841)
.. -.....+++. +.++.. ++.. ..++.|..+++.. +... .+. ..
T Consensus 114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-l~~~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (397)
T 1sq9_A 114 LLDSDMKKHSFWALKWGASNDRLLSHR-LVAT--------DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 184 (397)
T ss_dssp CSCTTGGGSCEEEEEEECCC----CEE-EEEE--------ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS
T ss_pred ccccccCCCcEEEEEEeeccCCCCceE-EEEE--------eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccC
Confidence 11 1455667776 544320 2222 1346788877654 3332 221 22
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEee---eeecCCCccccCCCCCCccccc-cceEEEEecCC
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL---EVLGSDSRVGIPNCRPEDNLWI-GKNLYWVESNL 422 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~---~~~~~~~~~~i~~~~~~avdw~-~~~LY~tD~~~ 422 (841)
.-.....+++.+.+ ++++-...+.|...++........+.. ........ ..+.|. .++++++-...
T Consensus 185 ~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i--------~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 185 PSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI--------RSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp SCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE--------EEEEECSSTTEEEEEEEE
T ss_pred CCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc--------ceEEECCCCCEEEEEecC
Confidence 34567889998876 666667788899988875433322221 00000000 112221 14445554455
Q ss_pred ---CcEEEEccCC-ceEEEEecC------------CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 423 ---DQIEVAKLSG-QFRRTLIAG------------DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 423 ---~~I~v~~~~G-~~~~~l~~~------------~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
+.|.+.++.. +....+... .-.....++++|...+|+.... .+.|...++........+..
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~ 331 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW---DGKLRFWDVKTKERITTLNM 331 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEEEEEEEC
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC---CCeEEEEEcCCCceeEEEec
Confidence 7899999864 444443320 3356789999998776665553 46777777754332222220
Q ss_pred cccC-CC---------------CCCceeEEEeccCC---------EEEEEeCCCCeEEEEEcCC
Q psy14257 487 DLLT-SR---------------GAWPNGLTLDYQLT---------RIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 487 ~~~~-~~---------------~~~P~glalD~~~~---------~LYw~d~~~~~I~~~~~dG 525 (841)
.... .. -.....+++.+.+. +++++-...+.|...++++
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 332 HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 0000 01 34467888886542 3444444466777666543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.13 Score=60.78 Aligned_cols=269 Identities=7% Similarity=-0.022 Sum_probs=136.6
Q ss_pred cCccccccccccccEEEEeccccc----eeeecccccCCcceeEEEec--------CCCeEEEEEecCCcccceEEEEeC
Q psy14257 227 NRHELRGVDLRTFNVIALISSLKN----TIALDFYYTPTANMVFWTDV--------IDDKIYNATLIGNSLSNIDVVVQT 294 (841)
Q Consensus 227 ~~~~I~~~~~~~~~~~~l~~~~~~----~~avd~~~~~~~~~lyw~d~--------~~~~I~~~~~~~~~~~~~~~~~~~ 294 (841)
....|+..++.+.....+...... +..+.|..+.+. |.++.. ..+.|+..+++++....... +.
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~--la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~- 109 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF--VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LP- 109 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE--EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CC-
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe--EEEEecCceeEEeecceEEEEEECCCCcccccee-cC-
Confidence 355677777777766666553222 556677665433 555432 14678888887664200011 11
Q ss_pred CCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccC------------------cCCCceEEE
Q psy14257 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKN------------------IQWPSSLVI 356 (841)
Q Consensus 295 ~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~------------------~~~P~glav 356 (841)
.....+++.|.++.+.+. . ++.|+..++++...+.+.... +....++++
T Consensus 110 --~~~~~~~~SPDG~~la~~-~----------~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 110 --RPIQYLCWSPVGSKLAYV-Y----------QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp --SSBCCEEECSSTTCEEEE-E----------TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred --cccccceECCCCCEEEEE-E----------CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 234557777766544432 1 236777777654444332211 133368999
Q ss_pred EccCCEEEEEeCCC---C------------------------------eEEEEEecCCccE---EEEeeeee-cCCCccc
Q psy14257 357 DYNQDILYWCDSHL---N------------------------------TVESVRVDGSERT---VSFNLEVL-GSDSRVG 399 (841)
Q Consensus 357 D~~~~~lYwaD~~~---~------------------------------~I~~~~ldG~~~~---~~~~~~~~-~~~~~~~ 399 (841)
.+++++|+++.... . .|+.+++++.... .+.....+ .....
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-- 254 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY-- 254 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE--
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce--
Confidence 99999998864321 1 4555555554321 11000000 00000
Q ss_pred cCCCCCCcccccc-ceEEEE--ecC--CCcEEEEc----cCCceEEEEe----cCC---CC--CceeEEEcCCCCeEEEE
Q psy14257 400 IPNCRPEDNLWIG-KNLYWV--ESN--LDQIEVAK----LSGQFRRTLI----AGD---ME--SPRAIALDPRFGLLFWT 461 (841)
Q Consensus 400 i~~~~~~avdw~~-~~LY~t--D~~--~~~I~v~~----~~G~~~~~l~----~~~---l~--~P~giavd~~~g~Ly~t 461 (841)
...+.|.. ++++++ +.. ...|.+.+ +++...+.+. ... +. .+..+++.|++..||+.
T Consensus 255 -----~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 255 -----FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp -----EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred -----EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 00122211 445444 222 23577777 5544333222 111 11 11267888887777663
Q ss_pred -ecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC------CCeEEEEEcCCC
Q psy14257 462 -DWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK------SDSIHTVTYDGK 526 (841)
Q Consensus 462 -d~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~------~~~I~~~~~dG~ 526 (841)
.......+|+..++++...+.+.. .. ....++..- .+++||++... ...|+.+++++.
T Consensus 330 ~~~~~g~~~l~~~~~~~~~~~~lt~-----~~-~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVENAIQITS-----GK-WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EECTTSCEEEEEESSCSTTCEECSC-----SS-SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EEccCCceEEEEEECCCCceEeccc-----Cc-eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 322235689999998776544432 11 112344444 67889888754 347888888654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.088 Score=56.36 Aligned_cols=242 Identities=7% Similarity=-0.042 Sum_probs=132.4
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccc-eEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSN-IDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~-~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
+.++.|... + .+.+-...+.|...++..+.... .+......-.....+++.+.++ +++ + ...++.
T Consensus 85 v~~~~~s~d-~---~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~-s-------gs~d~~ 150 (344)
T 4gqb_B 85 VADLTWVGE-R---GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAV-S-------GSKDIC 150 (344)
T ss_dssp EEEEEEETT-T---EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEE-E-------EETTSC
T ss_pred EEEEEEeCC-C---eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEE-E-------EeCCCe
Confidence 556777664 2 33455667888888776654111 1111222223455677766442 222 1 224567
Q ss_pred EEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccc
Q psy14257 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNL 409 (841)
Q Consensus 330 I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avd 409 (841)
|..+++............-.....+++.+.+..++.+-...++|+..++........+....... ...++.
T Consensus 151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~---------~~~~~~ 221 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY---------LPTSLA 221 (344)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC---------CEEEEE
T ss_pred EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeec---------cceeee
Confidence 88888764332222222334556788888887788887778888888876543332211100000 001122
Q ss_pred c--ccceEEEEecCCCcEEEEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 410 W--IGKNLYWVESNLDQIEVAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 410 w--~~~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
| .+++++++-...+.|.+.++.. +...++ .........|++.|....+..+-.. .+.|...++.... .+...
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~fsp~g~~~lasgs~--D~~i~vwd~~~~~--~~~~~ 296 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSE--DCSLAVLDSSLSE--LFRSQ 296 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESCC--CCEEE-ECCSSCEEEEEECSSSSCCEEEEET--TSCEEEECTTCCE--EEEEC
T ss_pred ecCCCCcceEEeccCCcEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCc--EEEEc
Confidence 2 2467777777778899998864 333343 3334566899999986555444433 4566666665432 22210
Q ss_pred cccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC
Q psy14257 487 DLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 487 ~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d 524 (841)
..-....+|++.+.+.+|+.+-...+.|..-+++
T Consensus 297 ----~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 297 ----AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ----CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ----CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 2234567888887777776655445556555544
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.16 Score=54.59 Aligned_cols=236 Identities=9% Similarity=-0.031 Sum_probs=119.5
Q ss_pred cccccceEEEEecCCCcEEEEccCCceEE----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSGQFRR----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G~~~~----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
+.|..+.-+++-...+.|.+.++...... ......-.....|++.|...+|..... .+.|...++........
T Consensus 100 ~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~---dg~v~iwd~~~~~~~~~ 176 (357)
T 4g56_B 100 VAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSVKVWDLSQKAVLKS 176 (357)
T ss_dssp EEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTTEEEEE
T ss_pred EEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcEEEE
Confidence 33433333444455678888776533211 111122345688999998666655543 35666666653322222
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeE
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSV 561 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i 561 (841)
.. ..-...+.+++.+.+..++.+-...+.|...++..............-..+..+++. ++.++.+-...+.|
T Consensus 177 ~~-----~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 177 YN-----AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp EC-----CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred Ec-----CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 22 233456788888766667777666778888887643322221111112235667764 35666665556677
Q ss_pred EEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeee--CCCCceeecCCCcccccCceeE
Q psy14257 562 IRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQ--CPHVMKLMSDNKTCQVADSQFI 639 (841)
Q Consensus 562 ~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~--Cp~g~~l~~d~~tC~~~~~~~l 639 (841)
...+..+++....+.... ...++. .|++ ..+|
T Consensus 252 ~~wd~~~~~~~~~~~~~~--------------------------------~~v~~l~~sp~~--------------~~~l 285 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHS--------------------------------QNITGLAYSYHS--------------SPFL 285 (357)
T ss_dssp EEEESSCGGGCEEECCCS--------------------------------SCEEEEEECSSS--------------SCCE
T ss_pred eEEECCCCcEeEEEeccc--------------------------------eeEEEEEEcCCC--------------CCEE
Confidence 777765555443322110 001111 1111 1233
Q ss_pred Eee-cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccC
Q psy14257 640 IFS-RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGG 701 (841)
Q Consensus 640 ~~~-~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~ 701 (841)
+.+ ....|+..+++... . ...+.-...+.+|+|.|..+.++.+-...++|+..++...
T Consensus 286 asgs~D~~i~iwd~~~~~--~--~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSE--V--FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEECTTSCE--E--EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEeCCCEEEEEECCCCc--E--eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 332 23445555554321 1 1112223457899999976666666667889998887543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.32 Score=51.18 Aligned_cols=255 Identities=8% Similarity=-0.043 Sum_probs=123.6
Q ss_pred ceeeecccccCCcceeEEEecC---CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecC-ceeEEEeeecCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVI---DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGK-NLYMFWAFWSLSPSNS 325 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~---~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~-~~y~~~td~~~~~~~~ 325 (841)
.+.++.|...... +..+-.. .+.|...++.++.. ........-.....+++.+... .-+++.. .
T Consensus 20 ~v~~~~~~p~~~~--l~~~~s~~~~d~~v~iw~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~--------~ 87 (357)
T 3i2n_A 20 TVFDCKWVPCSAK--FVTMGNFARGTGVIQLYEIQHGDL--KLLREIEKAKPIKCGTFGATSLQQRYLATG--------D 87 (357)
T ss_dssp CEEEEEECTTSSE--EEEEEC--CCCEEEEEEEECSSSE--EEEEEEEESSCEEEEECTTCCTTTCCEEEE--------E
T ss_pred ceEEEEEcCCCce--EEEecCccCCCcEEEEEeCCCCcc--cceeeecccCcEEEEEEcCCCCCCceEEEe--------c
Confidence 3567777665333 5444433 67777777765541 1111111122344455554310 1222211 2
Q ss_pred CCCCEEEEccCCCc-cccccccCcCCCceEE------EEccCCEEEEEeCCCCeEEEEEecCCc-cEEEEeeeeec-CCC
Q psy14257 326 SDGGIEKAGMHGEN-RSPLVTKNIQWPSSLV------IDYNQDILYWCDSHLNTVESVRVDGSE-RTVSFNLEVLG-SDS 396 (841)
Q Consensus 326 ~~~~I~~~~~dG~~-~~~l~~~~~~~P~gla------vD~~~~~lYwaD~~~~~I~~~~ldG~~-~~~~~~~~~~~-~~~ 396 (841)
.++.|..+++.... ........-.....++ +.+.+..|+ +-...+.|...++.... ....+...... ...
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIV-TGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEE-EEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEE-EEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 35678888876543 2222222223333443 334444554 44456778888776543 22211110000 000
Q ss_pred ccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcC---CCCeEEEEecCCCCCeEEEe
Q psy14257 397 RVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDP---RFGLLFWTDWDSKAPRIERC 473 (841)
Q Consensus 397 ~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~---~~g~Ly~td~~~~~~~I~r~ 473 (841)
...+.. ..++. ..++++++-...+.|.+.++.......... .......++++| ...+|+.... .+.|...
T Consensus 167 v~~~~~--~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~i~ 239 (357)
T 3i2n_A 167 CWTVAF--GNAYN-QEERVVCAGYDNGDIKLFDLRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATSL---EGKFHVF 239 (357)
T ss_dssp EEEEEE--ECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEESCSSSSCCEEEEEES---TTEEEEE
T ss_pred eEEEEE--EeccC-CCCCEEEEEccCCeEEEEECccCceeeecC-CCCceEEEEcCCCCCCCCEEEEECC---CCeEEEE
Confidence 000000 00011 125555666667899999988765543332 335678999998 6666665543 4566666
Q ss_pred cCCCC-CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 474 SMSGE-HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 474 ~ldG~-~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
++... ....+.... ....-.....+++.+.+..++++-...+.|...++..
T Consensus 240 d~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 240 DMRTQHPTKGFASVS-EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEETTTEEEEEE-EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred eCcCCCcccceeeec-cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 65422 111111000 0023345678999876554666666677888887753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=1.4 Score=52.79 Aligned_cols=310 Identities=9% Similarity=0.035 Sum_probs=143.5
Q ss_pred eccCccccccccccccEEEEeccc--cc-eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEE-eCCCCCcc
Q psy14257 225 FSNRHELRGVDLRTFNVIALISSL--KN-TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVV-QTGLSTAE 300 (841)
Q Consensus 225 ~s~~~~I~~~~~~~~~~~~l~~~~--~~-~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~-~~~l~~p~ 300 (841)
++...+|++++.....+..+.... .. +.++-.+.. +. ||+ -+..+.|++.+..++.+ +.+. ........
T Consensus 146 i~t~~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~-g~--lwi-gt~~~Gl~~~~~~~~~~---~~~~~~~~~~~i~ 218 (795)
T 4a2l_A 146 ISTPEGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQG-DQ--IYI-GTSTDGLYTYSITQKTF---EKVIPILGTKQIQ 218 (795)
T ss_dssp EEETTEEEEEETTTTEEECSSSCHHHHTCCEEEEEEET-TE--EEE-EESSSCEEEEETTTCCE---EECC----CCCEE
T ss_pred EEECCceEEEECCCCEEEeccCCCCCCcceEEEEECCC-CC--EEE-EECCCCEEEEeCCCCeE---EEecCCCCCCeeE
Confidence 333456666665544333222111 11 333333322 33 554 34444588877654431 1110 00112344
Q ss_pred ceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccccc-------CcCCCceEEEEccCCEEEEEeCCCCeE
Q psy14257 301 GLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTK-------NIQWPSSLVIDYNQDILYWCDSHLNTV 373 (841)
Q Consensus 301 giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~-------~~~~P~glavD~~~~~lYwaD~~~~~I 373 (841)
.|..|.. +++++ -|. .+.|.+.+......+.+... .-.....|+.|. .+.|++.... .|
T Consensus 219 ~i~~d~~-g~lwi-gt~---------~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigt~~--Gl 284 (795)
T 4a2l_A 219 AILQQSP-TRIWV-ATE---------GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLWIGTFN--DL 284 (795)
T ss_dssp EEEEEET-TEEEE-EEB---------SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEEEEESS--CE
T ss_pred EEEEcCC-CCEEE-EEC---------CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEEEEeCC--hh
Confidence 5666643 23333 121 23577777665433332211 112234566664 4556655432 57
Q ss_pred EEEEecCCccEEEEeeeeecCCCccccCCCCC--CccccccceEEEEecCCCcEEEEccCCceEEEEec----CCC--CC
Q psy14257 374 ESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP--EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA----GDM--ES 445 (841)
Q Consensus 374 ~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~--~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~----~~l--~~ 445 (841)
.+++......+.+.... ....+++.... +..| ..++|++.. ..+-|.+++......+.+.. ..+ ..
T Consensus 285 ~~~~~~~~~~~~~~~~~----~~~~~l~~~~i~~i~~D-~~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (795)
T 4a2l_A 285 NIYHEGTDSFASYSSNP----VENGSLSQRSVRSIFMD-SQGGMWLGT-YFGGLNYYHPIRNRFKNIRNIPYKNSLSDNV 358 (795)
T ss_dssp EEEETTTTEEEEECCCT----TSTTSCSSSCEEEEEEC-TTSCEEEEE-SSSCEEEECGGGGSSEEECCCTTSSSCSCSS
T ss_pred heEcCCCCeEEEEecCC----CCCCCCCCCcEEEEEEe-CCcCEEEEE-CCCCeEEeCCCcccceEEcCCCCCCCCCCCe
Confidence 77776554333221100 00001111000 0011 114554433 23456666554332222221 112 34
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEeccc---CCCCCCceeEEEeccCCE-EEEEeCCCCeEEEE
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL---TSRGAWPNGLTLDYQLTR-IYWIDAKSDSIHTV 521 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~---~~~~~~P~glalD~~~~~-LYw~d~~~~~I~~~ 521 (841)
.++|+.|.. |.|++...+ ..|.+.+......+.+...... .........|+.|. .++ ||+. ...+.|.++
T Consensus 359 V~~i~~d~~-g~lWiGt~~---~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWig-t~~~Gl~~~ 432 (795)
T 4a2l_A 359 VSCIVEDKD-KNLWIGTND---GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIG-THAGGLSIL 432 (795)
T ss_dssp EEEEEECTT-SCEEEEESS---SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEE-ETTTEEEEE
T ss_pred eEEEEECCC-CCEEEEECC---CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEE-eCcCceeEE
Confidence 578888864 778776543 4688888765433333210000 00123456788884 567 5554 445679999
Q ss_pred EcCCCeeEEEEcCCCCC--CcceEEEEe-cCeEEEEeCCCCeEEEEeccCC
Q psy14257 522 TYDGKDHHVVLSNHDSL--THPFAIALF-ENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 522 ~~dG~~~~~i~~~~~~l--~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g 569 (841)
+..+...+.+......+ ...+.|... ++.||++-. +.+.+.++.++
T Consensus 433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~ 481 (795)
T 4a2l_A 433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQR 481 (795)
T ss_dssp ETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTT
T ss_pred eCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCC
Confidence 98866555543211112 234566664 478888875 56888887654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.099 Score=55.37 Aligned_cols=166 Identities=7% Similarity=-0.000 Sum_probs=99.1
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC----CCeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH----LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~----~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
.+.|+.+++++...+.+ .....+++.+++++|+++... ...|+.++++++..+.+.......
T Consensus 42 ~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~--------- 107 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIR--------- 107 (347)
T ss_dssp EEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEE---------
T ss_pred cceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCcc---------
Confidence 34688888877655544 456778999999998887643 345889999887766554332110
Q ss_pred CCCCcccc--ccceEEEEecC--------------------------CCcEEEEccCCceE-EEEecCCCCCceeEEEcC
Q psy14257 403 CRPEDNLW--IGKNLYWVESN--------------------------LDQIEVAKLSGQFR-RTLIAGDMESPRAIALDP 453 (841)
Q Consensus 403 ~~~~avdw--~~~~LY~tD~~--------------------------~~~I~v~~~~G~~~-~~l~~~~l~~P~giavd~ 453 (841)
.+.| .++.|+++... ...|++.++++... +.+.. . ....+++.|
T Consensus 108 ----~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~sp 180 (347)
T 2gop_A 108 ----SLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHR 180 (347)
T ss_dssp ----EEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEET
T ss_pred ----ceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCC
Confidence 1122 23556665321 35788888876655 44443 2 677889998
Q ss_pred CCCeEEEEecCCC------CCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC-------CCeEEE
Q psy14257 454 RFGLLFWTDWDSK------APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK-------SDSIHT 520 (841)
Q Consensus 454 ~~g~Ly~td~~~~------~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~-------~~~I~~ 520 (841)
.. .+|.+..... ...|+..+ .|. .+.+.. . .... .+.+.+++|+++... ...|+.
T Consensus 181 dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~-----~--~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 181 DK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFE-----K--VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp TE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEE-----E--ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred Ce-EEEEEecccccccccccccEEEeC-CCc-eEEecc-----C--ccee--eECCCCCEEEEEEccccCCccccceEEE
Confidence 75 6665544311 34788888 433 333333 1 1112 236667778776532 357888
Q ss_pred EEcCCC
Q psy14257 521 VTYDGK 526 (841)
Q Consensus 521 ~~~dG~ 526 (841)
++ .|.
T Consensus 249 ~d-~~~ 253 (347)
T 2gop_A 249 YD-GKE 253 (347)
T ss_dssp EC-SSC
T ss_pred EC-CCc
Confidence 88 444
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0042 Score=70.04 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=77.6
Q ss_pred CCCCCccceEEeeecCceeEEEeeecCCCC------------CCCCCCEEEEccCCCccc------c-cc----------
Q psy14257 294 TGLSTAEGLAVDWIGKNLYMFWAFWSLSPS------------NSSDGGIEKAGMHGENRS------P-LV---------- 344 (841)
Q Consensus 294 ~~l~~p~giavD~~~~~~y~~~td~~~~~~------------~~~~~~I~~~~~dG~~~~------~-l~---------- 344 (841)
+.+..||++++++..+.+|+.-|+...... ....|.|+|...++.... . ++
T Consensus 381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~ 460 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence 345689999999988899999887543210 123578999887653211 1 11
Q ss_pred -----------ccCcCCCceEEEEccCCEEEE-EeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc
Q psy14257 345 -----------TKNIQWPSSLVIDYNQDILYW-CDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412 (841)
Q Consensus 345 -----------~~~~~~P~glavD~~~~~lYw-aD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~ 412 (841)
...|..|++|++|.. +.||+ +|...+ .+|.. .+ .-+
T Consensus 461 ~~~~g~~~~~~~~~fnsPDnL~fd~~-G~LWf~TD~~~~------~~g~~---------------~~----------~gn 508 (592)
T 4a9v_A 461 TPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSS------NAGDF---------------AG----------MGN 508 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCC------CSGGG---------------TT----------CCS
T ss_pred ccccCccCccccCccCCCCceEECCC-CCEEEEeCCCcC------ccccc---------------cc----------cCC
Confidence 014778889999875 56777 775421 00000 00 001
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~ 464 (841)
..||..+... |+..+.+.......|.||++.|+...||++-..
T Consensus 509 n~v~~~dp~t---------Gel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 509 NQMLCADPAT---------GEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CEEEEECTTT---------CCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred ceEEEEeCCC---------CeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 3444444433 333333322234679999999999999999865
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.33 Score=51.19 Aligned_cols=99 Identities=11% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC--CCCeEEEecCCCCCcEEEEEecccCCCCCCceeE
Q psy14257 422 LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS--KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGL 499 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~--~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~gl 499 (841)
...|++.++++...+.+ .....+++.|++.+|+++.... ....|+..++++.....+... . . ...+
T Consensus 42 ~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----~-~-~~~~ 109 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-----K-N-IRSL 109 (347)
T ss_dssp EEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-----S-E-EEEE
T ss_pred cceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-----C-C-ccce
Confidence 34677777776555444 3567889999988888876431 245699999987665555542 1 1 6788
Q ss_pred EEeccCCEEEEEeCC--------------------------CCeEEEEEcCCCee-EEEE
Q psy14257 500 TLDYQLTRIYWIDAK--------------------------SDSIHTVTYDGKDH-HVVL 532 (841)
Q Consensus 500 alD~~~~~LYw~d~~--------------------------~~~I~~~~~dG~~~-~~i~ 532 (841)
++.+.+++|+++... ...|+.+++++... +.+.
T Consensus 110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 898888888887421 35788888887765 4443
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00047 Score=66.29 Aligned_cols=41 Identities=37% Similarity=0.681 Sum_probs=36.0
Q ss_pred ccccccCCC---CCCCcccCCCCcEEecCCCceecCCCCccccc
Q psy14257 132 DEKQCLRSD---CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYL 172 (841)
Q Consensus 132 ~eC~~~~~~---C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~ 172 (841)
+||...++. |++.|.|++|+|.|.|++||.|..|+++|+++
T Consensus 125 ~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~ 168 (170)
T 1szb_A 125 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168 (170)
T ss_dssp CTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred CcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCccccc
Confidence 788765544 99999999999999999999999999999764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.71 Score=48.53 Aligned_cols=164 Identities=11% Similarity=0.014 Sum_probs=88.8
Q ss_pred CCceEEEEcc---CCEEEEEeCCCCeEEEEEecCC-ccEEEEeeeeecCCCccccCCCCCCcccccc-----ceEEEEec
Q psy14257 350 WPSSLVIDYN---QDILYWCDSHLNTVESVRVDGS-ERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG-----KNLYWVES 420 (841)
Q Consensus 350 ~P~glavD~~---~~~lYwaD~~~~~I~~~~ldG~-~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~-----~~LY~tD~ 420 (841)
...+|++.+. ++.++++-...+.|...++... ....+........... ..++.|.. +.++++-.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN-------FYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCC-------EEEEEEEECTTTCCEEEEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCc-------EEEEEeccCCCCCCCEEEEec
Confidence 3456777753 3444444444457888887633 3333221110000000 01222321 35666666
Q ss_pred CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEE
Q psy14257 421 NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLT 500 (841)
Q Consensus 421 ~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~gla 500 (841)
..+.|.+.++........+.........|+++|.++.++.+-.. .+.|...++.......... .....-.....++
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~ 168 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK--DHALRLWNIQTDTLVAIFG--GVEGHRDEVLSAD 168 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET--TSCEEEEETTTTEEEEEEC--STTSCSSCEEEEE
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC--CCeEEEEEeecCeEEEEec--ccccccCceeEEE
Confidence 77899999987443333333445678899999944544444433 4677777776433322221 0002344678899
Q ss_pred EeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 501 LDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 501 lD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
+++.+..|+.+. ..+.|...++..
T Consensus 169 ~~~~~~~l~~~~-~dg~i~i~d~~~ 192 (366)
T 3k26_A 169 YDLLGEKIMSCG-MDHSLKLWRINS 192 (366)
T ss_dssp ECTTSSEEEEEE-TTSCEEEEESCS
T ss_pred ECCCCCEEEEec-CCCCEEEEECCC
Confidence 987666666554 467888888764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.85 Score=49.35 Aligned_cols=286 Identities=10% Similarity=0.016 Sum_probs=141.4
Q ss_pred EEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC-Cee
Q psy14257 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG-KDH 528 (841)
Q Consensus 450 avd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG-~~~ 528 (841)
++.+...+|.... . .+.|...++.......... ..-.....+++.+.+..|+.+ ...+.|...++.. ...
T Consensus 104 ~~~~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 104 TAKLQMRRFILGT-T--EGDIKVLDSNFNLQREIDQ-----AHVSEITKLKFFPSGEALISS-SQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp EECSSSCEEEEEE-T--TSCEEEECTTSCEEEEETT-----SSSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCCC
T ss_pred EEecCCCEEEEEE-C--CCCEEEEeCCCcceeeecc-----cccCccEEEEECCCCCEEEEE-eCCCeEEEEeCCCCcCc
Confidence 3444444444433 2 4566666666433322211 233456789998766655544 4467899999864 444
Q ss_pred EEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccc
Q psy14257 529 HVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCL 607 (841)
Q Consensus 529 ~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~ 607 (841)
..+. .+ -.....+++. ++.++++-...+.|...+..+++....+.........+ ..+++
T Consensus 175 ~~~~-~h--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v-----------------~~~~~ 234 (420)
T 3vl1_A 175 RTLI-GH--RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV-----------------NSIAL 234 (420)
T ss_dssp EEEE-CC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE-----------------EEEEE
T ss_pred eEEc-CC--CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc-----------------cEEEE
Confidence 4443 22 2334677775 34555555556778878876666554443211110000 00000
Q ss_pred cCCCCceeeeCCCCceeecCCCcc--cccCceeEEeec-CCeEEEEecCCCCccccceeecCCCCCceEEEEecCCC-EE
Q psy14257 608 IGMNGTYKCQCPHVMKLMSDNKTC--QVADSQFIIFSR-PREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANK-KI 683 (841)
Q Consensus 608 ~~~~~~~~C~Cp~g~~l~~d~~tC--~~~~~~~l~~~~-~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-~i 683 (841)
....... -........++ ..+...+|+.+. ...|+..++..... ...+.......+.+++|+|... .|
T Consensus 235 ~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 235 FVGTDRQ------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp EECCCSS------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE--EEEECCTTSSCEEEEEECSSCTTEE
T ss_pred ecCCcce------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce--eEEcccccCCCceeEEEeCCCCCEE
Confidence 0000000 00000001111 112234455443 44577777654321 1122222234578999999888 55
Q ss_pred EEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCe
Q psy14257 684 YWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSK 763 (841)
Q Consensus 684 yw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~ 763 (841)
+... ..+.|+..++...... ...+....-..+..+++. .+.++++ ....++
T Consensus 307 ~~g~-~dg~i~vwd~~~~~~~------------------------~~~~~~~~~~~v~~~~~~--~~~~l~s--~~~d~~ 357 (420)
T 3vl1_A 307 YAGY-ENGMLAQWDLRSPECP------------------------VGEFLINEGTPINNVYFA--AGALFVS--SGFDTS 357 (420)
T ss_dssp EEEE-TTSEEEEEETTCTTSC------------------------SEEEEESTTSCEEEEEEE--TTEEEEE--ETTTEE
T ss_pred EEEe-CCCeEEEEEcCCCcCc------------------------hhhhhccCCCCceEEEeC--CCCEEEE--ecCCcc
Confidence 5444 6789999988764300 112222122344555443 3456666 245678
Q ss_pred EEEEecCCc----------ceEEEEcCCCCCCCcCCCceEEEEeCCCC---eEEEEec
Q psy14257 764 IVVCNLEGE----------YQTTILSNESNDTSTLSKISSIAVWPVKG---KMFWSNV 808 (841)
Q Consensus 764 I~v~~l~g~----------~~~~~~~~~~~~~~~l~~p~~iavd~~~g---~lyw~d~ 808 (841)
|.+.++... ....+... .....+++..|... .|+-+-.
T Consensus 358 v~iw~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 358 IKLDIISDPESERPAIEFETPTFLVSN-------DDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp EEEEEECCTTCCSCEECTTSCEEECCS-------SCCCCEEEEECCSSSSCEEEEEET
T ss_pred EEEEeccCCCCCccceeccCccEEccC-------CcceEEEEEccCCCCcceEEEEcC
Confidence 999988652 12222222 35677788887655 4554443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.21 Score=52.62 Aligned_cols=265 Identities=9% Similarity=-0.043 Sum_probs=128.4
Q ss_pred CccccccccccccEEEEe--ccccceeeecccccC--CcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceE
Q psy14257 228 RHELRGVDLRTFNVIALI--SSLKNTIALDFYYTP--TANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLA 303 (841)
Q Consensus 228 ~~~I~~~~~~~~~~~~l~--~~~~~~~avd~~~~~--~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~gia 303 (841)
...|+..++.......+. .....+.++.|.... +. ++++-...+.|...++..+. .....+...-.....++
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~ 118 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR--YLATGDFGGNLHIWNLEAPE--MPVYSVKGHKEIINAID 118 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTC--CEEEEETTSCEEEECTTSCS--SCSEEECCCSSCEEEEE
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCc--eEEEecCCCeEEEEeCCCCC--ccEEEEEecccceEEEe
Confidence 445665666655443332 223456788887753 33 55666677888888776543 12222222222233332
Q ss_pred ------EeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCc-cccccccC----cCCCceEE----EEccCCEEEEEeC
Q psy14257 304 ------VDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN-RSPLVTKN----IQWPSSLV----IDYNQDILYWCDS 368 (841)
Q Consensus 304 ------vD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~-~~~l~~~~----~~~P~gla----vD~~~~~lYwaD~ 368 (841)
+.+.+ -+++.. ..++.|..+++.... ........ -.....++ +.+.+ .++++-.
T Consensus 119 ~~~~~~~s~~~--~~l~~~--------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~ 187 (357)
T 3i2n_A 119 GIGGLGIGEGA--PEIVTG--------SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGY 187 (357)
T ss_dssp EESGGGCC-CC--CEEEEE--------ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEE
T ss_pred eccccccCCCc--cEEEEE--------eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEc
Confidence 22222 122221 235678888876443 22222111 11233444 33344 4444445
Q ss_pred CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccc----cceEEEEecCCCcEEEEccCCceE-EE----Ee
Q psy14257 369 HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI----GKNLYWVESNLDQIEVAKLSGQFR-RT----LI 439 (841)
Q Consensus 369 ~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~----~~~LY~tD~~~~~I~v~~~~G~~~-~~----l~ 439 (841)
..+.|...++............ .. ...+.|. .+.++++-...+.|.+.++..... .. ..
T Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~-----~~-------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 255 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALRWETNIK-----NG-------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE 255 (357)
T ss_dssp TTSEEEEEETTTTEEEEEEECS-----SC-------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEE
T ss_pred cCCeEEEEECccCceeeecCCC-----Cc-------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeecc
Confidence 5677888887765543221110 00 0112222 255555556678888888754221 11 11
Q ss_pred cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC-c----------------EEEEEecccCCCCCCceeEEEe
Q psy14257 440 AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH-R----------------SVIVRVDLLTSRGAWPNGLTLD 502 (841)
Q Consensus 440 ~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~-~----------------~~i~~~~~~~~~~~~P~glalD 502 (841)
.........++++|....++++-.. .+.|...++.... . ..+.... ..-.....+++.
T Consensus 256 ~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~v~~~~~s 330 (357)
T 3i2n_A 256 KAHKSTVWQVRHLPQNRELFLTAGG--AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT---LSTQPISSLDWS 330 (357)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEET--TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE---CCSSCEEEEEEC
T ss_pred CCCcCCEEEEEECCCCCcEEEEEeC--CCcEEEeecCCCcccccccCCCCccccccccceeeccc---cCCCCeeEEEEc
Confidence 1344567899999875545555444 3455555543211 1 1221110 223345678887
Q ss_pred ccCCEEEEEeCCCCeEEEEEcC
Q psy14257 503 YQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 503 ~~~~~LYw~d~~~~~I~~~~~d 524 (841)
+.+..|+++-...+.|...++.
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCeEEEEecCCCcEEEEECC
Confidence 7666666555555667666654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.94 Score=49.34 Aligned_cols=286 Identities=10% Similarity=0.007 Sum_probs=148.0
Q ss_pred ceEEEEecCCCcEEEEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
+.+.++-...+.|.+.++.. ....+ +.........|+++|.+.+|..... .+.|...++.+........ .
T Consensus 120 ~~~l~s~s~Dg~i~vwd~~~~~~~~~-l~~h~~~V~~v~~~~~~~~l~sgs~---D~~i~iwd~~~~~~~~~~~-----~ 190 (410)
T 1vyh_C 120 FSVMVSASEDATIKVWDYETGDFERT-LKGHTDSVQDISFDHSGKLLASCSA---DMTIKLWDFQGFECIRTMH-----G 190 (410)
T ss_dssp SSEEEEEESSSCEEEEETTTCCCCEE-ECCCSSCEEEEEECTTSSEEEEEET---TSCCCEEETTSSCEEECCC-----C
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEE-EeccCCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEEc-----C
Confidence 45566666678888888764 34444 3334456789999987555544443 3444444554432221111 2
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe-eEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCC
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD-HHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~-~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g 569 (841)
.-.....+++.+.+..|+ +-...+.|...++.... ..++. .+ -.....+++. ++.++++-...+.|...+..++
T Consensus 191 h~~~V~~v~~~p~~~~l~-s~s~D~~i~~wd~~~~~~~~~~~-~h--~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~ 266 (410)
T 1vyh_C 191 HDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTGYCVKTFT-GH--REWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266 (410)
T ss_dssp CSSCEEEEEECSSSSEEE-EEETTSEEEEEETTTCCEEEEEE-CC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCcEEEEEe-CC--CccEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 233467888887655555 44456788888886543 33333 22 1223455553 4666666666677777776655
Q ss_pred cceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeec-CCeEE
Q psy14257 570 SDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSR-PREIR 648 (841)
Q Consensus 570 ~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~-~~~i~ 648 (841)
+....+.........+...|... ...+....+ ... .....+.++|+.+. ...|+
T Consensus 267 ~~~~~~~~h~~~v~~~~~~~~~~-----------~~~~~~~~~---------~~~-----~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 267 ECKAELREHRHVVECISWAPESS-----------YSSISEATG---------SET-----KKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp CEEEEECCCSSCEEEEEECCSCG-----------GGGGGGCCS---------CC------------CCEEEEEETTSEEE
T ss_pred ceeeEecCCCceEEEEEEcCccc-----------ccchhhhcc---------ccc-----cccCCCCCEEEEEeCCCeEE
Confidence 54433322111111110001000 000000000 000 00001234455443 44577
Q ss_pred EEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCce
Q psy14257 649 GVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQ 728 (841)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (841)
..++..... +..+ ......+.+|+|++....|+-.. ..++|+..++....
T Consensus 322 iwd~~~~~~--~~~~-~~h~~~v~~v~~~~~g~~l~s~s-~D~~i~vwd~~~~~-------------------------- 371 (410)
T 1vyh_C 322 MWDVSTGMC--LMTL-VGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKR-------------------------- 371 (410)
T ss_dssp EEETTTTEE--EEEE-ECCSSCEEEEEECSSSSCEEEEE-TTTEEEEECCTTSC--------------------------
T ss_pred EEECCCCce--EEEE-ECCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc--------------------------
Confidence 777654321 1111 11224567899998888777555 67889988876544
Q ss_pred EEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec
Q psy14257 729 IQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL 769 (841)
Q Consensus 729 ~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l 769 (841)
....+...-..+.+|++.+.+..|.-. ...++|.+.++
T Consensus 372 ~~~~~~~h~~~v~~l~~~~~~~~l~sg---s~D~~i~vW~~ 409 (410)
T 1vyh_C 372 CMKTLNAHEHFVTSLDFHKTAPYVVTG---SVDQTVKVWEC 409 (410)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCEEEE---ETTSEEEEEC-
T ss_pred eEEEEcCCCCcEEEEEEcCCCCEEEEE---eCCCcEEEEeC
Confidence 122234455668889998877655544 24677887654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.33 Score=50.79 Aligned_cols=255 Identities=10% Similarity=-0.066 Sum_probs=130.3
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
+.++.|.... . +.++-...+.|...++..+........+...-.....+++.+.+ +.+++.. ..++.|
T Consensus 14 v~~~~~s~~~-~--~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~--------~~dg~i 81 (342)
T 1yfq_A 14 ISDIKIIPSK-S--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVG--------TVQGEI 81 (342)
T ss_dssp EEEEEEEGGG-T--EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEE--------ETTSCE
T ss_pred EEEEEEcCCC-C--EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEE--------cCCCeE
Confidence 5566776643 2 44444567788777776543101112222233456667777654 2033222 235689
Q ss_pred EEEcc-CCCcccccccc-CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEE-EEeeeeecCCCccccCCCCCCc
Q psy14257 331 EKAGM-HGENRSPLVTK-NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTV-SFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 331 ~~~~~-dG~~~~~l~~~-~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~-~~~~~~~~~~~~~~i~~~~~~a 407 (841)
..+++ .+.....+... .-.....|++.+ ++.|+ +-...+.|...++....... ......+. .+. ......+
T Consensus 82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~-~~~~v~~ 155 (342)
T 1yfq_A 82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLI-AASWDGLIEVIDPRNYGDGVIAVKNLNSN---NTK-VKNKIFT 155 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEE-EEETTSEEEEECHHHHTTBCEEEEESCSS---SSS-SCCCEEE
T ss_pred EEEEeccCCceEeccccCCCCceEEEEeCC-CCEEE-EEcCCCeEEEEcccccccccccccCCeee---EEe-eCCceEE
Confidence 99998 76654333221 334456888888 55555 44456778877765300000 00000000 000 0001123
Q ss_pred cccccceEEEEecCCCcEEEEccCC-ce--EEEEecCCCCCceeEEEcC-CCCeEEEEecCCCCCeEEEecCCC------
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSG-QF--RRTLIAGDMESPRAIALDP-RFGLLFWTDWDSKAPRIERCSMSG------ 477 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G-~~--~~~l~~~~l~~P~giavd~-~~g~Ly~td~~~~~~~I~r~~ldG------ 477 (841)
++|..+.|+. -...+.|.+.++.. .. ........-..+..|+++| ...+|+.... .+.|...+++.
T Consensus 156 ~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 156 MDTNSSRLIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---DGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEECSSEEEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---TSEEEEEECCTTCCSTT
T ss_pred EEecCCcEEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec---CCcEEEEEEcCCCcccc
Confidence 4455555444 44567899988876 21 2222323335678999998 6555555443 45555544443
Q ss_pred -CCcEEEEEecccC---CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee
Q psy14257 478 -EHRSVIVRVDLLT---SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH 528 (841)
Q Consensus 478 -~~~~~i~~~~~~~---~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~ 528 (841)
.....+....... ........+++.+.+..|+.+. ..+.|...++.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKK 285 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEcCccHhH
Confidence 3333332210000 0022677899987666666554 467899999875543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.92 Score=49.06 Aligned_cols=108 Identities=8% Similarity=0.031 Sum_probs=70.1
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~ 491 (841)
++++++-...+.|.+.++........+.........|+++|...+|+.... .+.|...+++ +.....+ . .
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~-~-----~ 179 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ---DMQLKIWSVKDGSNPRTL-I-----G 179 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCCCEEE-E-----C
T ss_pred CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC---CCeEEEEeCCCCcCceEE-c-----C
Confidence 444445455677888888766655555455567889999998666665553 4677777775 3344433 2 2
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEE
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~ 530 (841)
.-.....+++.+.+..|+.+. ..+.|...++.......
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSAS-LDGTIRLWECGTGTTIH 217 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEc-CCCcEEEeECCCCceeE
Confidence 345578899998766666544 46788888887554433
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=70.25 Aligned_cols=86 Identities=26% Similarity=0.627 Sum_probs=19.2
Q ss_pred ccCCCCCeEecCCCCCCCCCCCCCCCCCccc--ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccccccccC
Q psy14257 101 DCQDVLRTCIPKALVCDGEPACFNGEDEMFC--DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176 (841)
Q Consensus 101 ~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C--~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~ 176 (841)
.|.++ +.|+.. ..| .|.+||.+..| ++|. ..|.+ .|. +.+.|.|++||. |..|+ .++|.
T Consensus 218 ~C~~~-G~C~~~-~~C----~C~~G~~G~~C~~~~C~---~~C~~~g~C~---~~~~C~C~~G~~----G~~C~-~~~C~ 280 (324)
T 2ygq_A 218 TCFNG-GTCFYP-GKC----ICPPGLEGEQCEISKCP---QPCRNGGKCI---GKSKCKCSKGYQ----GDLCS-KPVCE 280 (324)
T ss_dssp CCCSS-CCBSCS-SCB----CCCTTCCTTTTC------------------------------------------------
T ss_pred CCCCC-CeeCCC-Cee----eCCCCccCCCCCcCcCC---CcCCCCCEEC---CCCEEECCCCCc----CCCCc-CCCCC
Confidence 57776 788663 567 89999988778 4453 24542 665 357999999997 55676 34553
Q ss_pred CCCCccC--ceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 177 AWGTCSQ--DCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 177 ~~~~Cs~--~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
..|+. .|.+ .++|.|.+||. +..|...
T Consensus 281 --~~C~~~g~C~~-----~~~C~C~~G~~----G~~C~~~ 309 (324)
T 2ygq_A 281 --PGCGAHGTCHE-----PNKCQCQEGWH----GRHCNKR 309 (324)
T ss_dssp ----------------------------------------
T ss_pred --CCCCCCCEECC-----CCEeECCCCCc----CCCCCCC
Confidence 24432 4533 47899999997 4567543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.86 Score=47.88 Aligned_cols=272 Identities=11% Similarity=-0.005 Sum_probs=145.2
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+++.++-...+.|.+.++........+.........++++|...+|+.... .+.|...++.......... .
T Consensus 44 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~------~ 114 (369)
T 3zwl_B 44 GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA---DYSIKLWDVSNGQCVATWK------S 114 (369)
T ss_dssp SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TTEEEEEETTTCCEEEEEE------C
T ss_pred CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEee------c
Confidence 444445455678888887544333333334456789999997666665543 4678888876544433333 2
Q ss_pred CCCceeEEEeccCCEEEEEeCC----CCeEEEEEcCCCe------------eEEEEcCCCCCCcceEEEEe-cCeEEEEe
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAK----SDSIHTVTYDGKD------------HHVVLSNHDSLTHPFAIALF-ENHVYWTD 555 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~----~~~I~~~~~dG~~------------~~~i~~~~~~l~~P~gla~~-~~~lY~td 555 (841)
-..+..+++.+.+..|+.+... .+.|...++.... ...+... ........+++. ++.++++-
T Consensus 115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH-EGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC-TTCCCEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC-cCccceeEEEEcCCCCEEEEE
Confidence 3457889999877766665542 2677777765431 1111111 111134556653 33333443
Q ss_pred CCCCeEEEEeccCC-cceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccccc
Q psy14257 556 WRTNSVIRANKWNG-SDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVA 634 (841)
Q Consensus 556 ~~~~~i~~~~~~~g-~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~ 634 (841)
...+.|...+..++ .....+.... +...+. .+.++
T Consensus 194 ~~dg~i~i~d~~~~~~~~~~~~~~~--------------------------------~~v~~~-----~~~~~------- 229 (369)
T 3zwl_B 194 HKDGKISKYDVSNNYEYVDSIDLHE--------------------------------KSISDM-----QFSPD------- 229 (369)
T ss_dssp ETTSEEEEEETTTTTEEEEEEECCS--------------------------------SCEEEE-----EECTT-------
T ss_pred cCCCEEEEEECCCCcEeEEEEecCC--------------------------------CceeEE-----EECCC-------
Confidence 44567776766542 2222221100 001110 01111
Q ss_pred CceeEEee-cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCC-------------eEEEEEccc
Q psy14257 635 DSQFIIFS-RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYN-------------EVKRSSIVG 700 (841)
Q Consensus 635 ~~~~l~~~-~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~-------------~I~~~~~~g 700 (841)
..+|+.+ ....|+..++..... ...+. ....+..+++.+....++....... .|+..++..
T Consensus 230 -~~~l~~~~~d~~i~v~d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 230 -LTYFITSSRDTNSFLVDVSTLQV--LKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp -SSEEEEEETTSEEEEEETTTCCE--EEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT
T ss_pred -CCEEEEecCCceEEEEECCCCce--eeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence 1223333 345566666654321 11111 2345678899999999988874322 333333322
Q ss_pred CceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc
Q psy14257 701 GQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE 772 (841)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~ 772 (841)
.. ....+......+..|++.+.++.|+-+ ...++|.+.+++..
T Consensus 305 ~~--------------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 305 EE--------------------------EIGRVQGHFGPLNTVAISPQGTSYASG---GEDGFIRLHHFEKS 347 (369)
T ss_dssp CC--------------------------EEEEEECCSSCEEEEEECTTSSEEEEE---ETTSEEEEEEECHH
T ss_pred Cc--------------------------chhheecccCcEEEEEECCCCCEEEEE---cCCCeEEEEECccc
Confidence 22 233344556778899999877666655 24678999988754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=1.1 Score=49.06 Aligned_cols=142 Identities=11% Similarity=-0.011 Sum_probs=74.5
Q ss_pred EEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCC
Q psy14257 415 LYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGA 494 (841)
Q Consensus 415 LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~ 494 (841)
+.++-...+.|.+.++........+.........+++++ ..|+.... .+.|...++.......... ....
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~---dg~i~~wd~~~~~~~~~~~-----~~~~ 240 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR---DATLRVWDIETGQCLHVLM-----GHVA 240 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TEEEEEET---TSEEEEEESSSCCEEEEEE-----CCSS
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC--CEEEEEeC---CCEEEEEECCCCcEEEEEc-----CCcc
Confidence 444444556677777654333222333334556777763 34544442 4677777775433333333 2334
Q ss_pred CceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 495 WPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 495 ~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
....+++| +..|+.+ ...+.|...++........+..+ -.....+++.+.+|+.+ ...+.|...+..+++..
T Consensus 241 ~v~~~~~~--~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 241 AVRCVQYD--GRRVVSG-AYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFDGIHVVSG-SLDTSIRVWDVETGNCI 312 (445)
T ss_dssp CEEEEEEC--SSCEEEE-ETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEECSSEEEEE-ETTSCEEEEETTTCCEE
T ss_pred cEEEEEEC--CCEEEEE-cCCCEEEEEECCCCcEeEEecCC--CCceEEEEECCCEEEEE-eCCCeEEEEECCCCCEE
Confidence 45566663 4455544 44678888888765443333322 22345666644444444 44567777776655533
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.69 Score=55.01 Aligned_cols=235 Identities=10% Similarity=0.092 Sum_probs=134.0
Q ss_pred eecCceeEEEeeecCCCCCCCCCCEEEEccC---CCcccccccc-Cc-----CCCceEEEEccCCEEEEEeCCC----Ce
Q psy14257 306 WIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH---GENRSPLVTK-NI-----QWPSSLVIDYNQDILYWCDSHL----NT 372 (841)
Q Consensus 306 ~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d---G~~~~~l~~~-~~-----~~P~glavD~~~~~lYwaD~~~----~~ 372 (841)
+.++.+|+++.+-+. ..+.|++.+.+ |...+++... .+ ..-.++++.+++++|.++-... ..
T Consensus 116 pdG~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~ 190 (741)
T 1yr2_A 116 RRGASVFYSWNSGLM-----NQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRT 190 (741)
T ss_dssp EETTEEEEEEECSSC-----SSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEE
T ss_pred EECCEEEEEEEcCCC-----eEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEE
Confidence 456667776664332 23578888876 5555554322 11 1345788999988887764322 36
Q ss_pred EEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc-ceEEEEecC-------------CCcEEEEccCCceE-EE
Q psy14257 373 VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG-KNLYWVESN-------------LDQIEVAKLSGQFR-RT 437 (841)
Q Consensus 373 I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~-~~LY~tD~~-------------~~~I~v~~~~G~~~-~~ 437 (841)
|+..+++++............ ..+.|.. +.||++... ..+|++.++.+... ..
T Consensus 191 i~v~dl~tg~~~~~~~~~~~~------------~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 258 (741)
T 1yr2_A 191 VKFVGVADGKPLADELKWVKF------------SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ 258 (741)
T ss_dssp EEEEETTTCCEEEEEEEEEES------------CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE
T ss_pred EEEEECCCCCCCCccCCCcee------------ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE
Confidence 999999887654331111100 1233422 566666432 23577877754331 12
Q ss_pred EecCCCC---CceeEEEcCCCCeEEEEecCC--CCCeEEEecCCCC--C-cEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 438 LIAGDME---SPRAIALDPRFGLLFWTDWDS--KAPRIERCSMSGE--H-RSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 438 l~~~~l~---~P~giavd~~~g~Ly~td~~~--~~~~I~r~~ldG~--~-~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
++..... .-.+++++|++.+|+++.... ....|+..++++. . .+.+.. ....-... +++.+++||
T Consensus 259 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~------~~~~~~~~-~~~dg~~l~ 331 (741)
T 1yr2_A 259 PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP------DLKAQWDF-VDGVGDQLW 331 (741)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC------SSSSCEEE-EEEETTEEE
T ss_pred EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC------CCCceEEE-EeccCCEEE
Confidence 2222222 246889999877888876432 2568999998765 3 444433 11111222 346688888
Q ss_pred EEeC---CCCeEEEEEcCC--CeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCC--eEEEEec
Q psy14257 510 WIDA---KSDSIHTVTYDG--KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN--SVIRANK 566 (841)
Q Consensus 510 w~d~---~~~~I~~~~~dG--~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~--~i~~~~~ 566 (841)
+... .+.+|..+++++ ...+.++.... ....++++++++|+++-...+ .|+.++.
T Consensus 332 ~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~--~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 332 FVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK--DNLESVGIAGNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp EEECTTCTTCEEEEEECSSSSCEEEEEECCCS--SEEEEEEEEBTEEEEEEEETTEEEEEEEET
T ss_pred EEECCCCCCCEEEEEeCCCCccccEEEecCCC--CeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 8753 256899999987 34555554321 123467778888888765443 4555553
|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.002 Score=73.44 Aligned_cols=36 Identities=36% Similarity=1.083 Sum_probs=32.1
Q ss_pred CCCCCCcccC-CCCCeEecCCCCCCCCCCCCCCCCCcccc
Q psy14257 94 ACEPHEFDCQ-DVLRTCIPKALVCDGEPACFNGEDEMFCD 132 (841)
Q Consensus 94 ~C~~~~~~C~-~~~~~Ci~~~~~Cdg~~~C~~g~de~~C~ 132 (841)
.|. .+|.|. + +.||+..++|||..||.|++||..|.
T Consensus 65 ~c~-~~f~C~~~--g~Ci~~~~~Cdg~~dC~d~sDE~~C~ 101 (554)
T 3ojy_A 65 QCG-QDFQCKET--GRCLKRHLVCNGDQDCLDGSDEDDCE 101 (554)
T ss_dssp CCS-SSEECSSS--CCEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred CCC-CcCccCCC--CEEcccccccCCcccCCCccccccCC
Confidence 464 689998 6 89999999999999999999998874
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=63.12 Aligned_cols=52 Identities=25% Similarity=0.648 Sum_probs=42.5
Q ss_pred CCceecCCCCccccccccCCC-C---CccCceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 158 RDMYLQPDLITCSYLHPCEAW-G---TCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 158 ~Gy~l~~d~~~C~~~~eC~~~-~---~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
.||.+ ...|.+++||... + .|++.|.++ .++|.|.|.+||.|..++++|+++
T Consensus 113 ~Gf~~---~~~~~di~eC~~~~~~~~~C~~~C~n~--~g~~~C~C~~Gy~l~~d~~~C~~~ 168 (170)
T 1szb_A 113 TGFEA---FYAAEDIDECQVAPGEAPTCDHHCHNH--LGGFYCSCRAGYVLHRNKRTCSEQ 168 (170)
T ss_dssp CEEEE---EEEEEECCTTCCCTTSCCSSSSEEEEE--TTEEEEECCTTEEECTTSSCEEEC
T ss_pred cCcee---eeeccccCcccCCCCCCCccCCccccC--CCCEEEeCCCCcEECCCCCccccc
Confidence 56654 2356788999743 3 399999999 999999999999999999999875
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.91 Score=47.35 Aligned_cols=254 Identities=9% Similarity=-0.020 Sum_probs=133.5
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC----cEEEEEecccCCCCCCceeEEEeccCC-EEEEEeCCCCeE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH----RSVIVRVDLLTSRGAWPNGLTLDYQLT-RIYWIDAKSDSI 518 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~----~~~i~~~~~~~~~~~~P~glalD~~~~-~LYw~d~~~~~I 518 (841)
....+++++|...+|+.+.. .+.|...+++... ...+.. .-.....+++.+.+. .|+.+. ..+.|
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~---d~~v~iw~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~-~dg~i 81 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSW---DGSLTVYKFDIQAKNVDLLQSLR------YKHPLLCCNFIDNTDLQIYVGT-VQGEI 81 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET---TSEEEEEEEETTTTEEEEEEEEE------CSSCEEEEEEEESSSEEEEEEE-TTSCE
T ss_pred CcEEEEEEcCCCCEEEEEcC---CCeEEEEEeCCCCccccceeeee------cCCceEEEEECCCCCcEEEEEc-CCCeE
Confidence 45678999987666666553 3566666665444 222222 334568899987766 566555 46789
Q ss_pred EEEEc-CCCeeEEEEcC-CCCCCcceEEEEecCeEEEEeCCCCeEEEEeccC--CcceEEEecccCCCceeccCCcccCC
Q psy14257 519 HTVTY-DGKDHHVVLSN-HDSLTHPFAIALFENHVYWTDWRTNSVIRANKWN--GSDVTLIQRTLTQPFIYVNGVVKKSP 594 (841)
Q Consensus 519 ~~~~~-dG~~~~~i~~~-~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~--g~~~~~i~~~~~~p~~~h~qp~~~n~ 594 (841)
...++ .+.....+... . -.....|++..+.++++-...+.|...+..+ +...........
T Consensus 82 ~~wd~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------- 145 (342)
T 1yfq_A 82 LKVDLIGSPSFQALTNNEA--NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-------------- 145 (342)
T ss_dssp EEECSSSSSSEEECBSCCC--CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--------------
T ss_pred EEEEeccCCceEeccccCC--CCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeee--------------
Confidence 99998 77665444320 1 2234566665344555544556666655432 111100000000
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCC-CCccccceeecCCCCCceE
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEH-PYYHTIPTISIPQVFSPNN 673 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~ 673 (841)
. ....+...+.. +. +..++..+....|+..++.. ... ............+..
T Consensus 146 --~----------~~~~~~v~~~~-----~~---------~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~ 198 (342)
T 1yfq_A 146 --N----------TKVKNKIFTMD-----TN---------SSRLIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRD 198 (342)
T ss_dssp --S----------SSSCCCEEEEE-----EC---------SSEEEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEE
T ss_pred --E----------EeeCCceEEEE-----ec---------CCcEEEEeCCCeEEEEECCccccc-cceeeecCCCCceeE
Confidence 0 00001111111 01 11133334455777777765 221 111222223346789
Q ss_pred EEEec-CCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCC---------CCCccee
Q psy14257 674 LNFDA-ANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAG---------ISHPSGL 743 (841)
Q Consensus 674 v~~d~-~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~~~p~gl 743 (841)
++|.+ ..+.++... ..+.|+..+++..... .... ....+... ...+..|
T Consensus 199 i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 199 VALLPKEQEGYACSS-IDGRVAVEFFDDQGDD-------------------YNSS-KRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp EEECSGGGCEEEEEE-TTSEEEEEECCTTCCS-------------------TTCT-TCEEEECCCCCTTCCSSCCCEEEE
T ss_pred EEECCCCCCEEEEEe-cCCcEEEEEEcCCCcc-------------------cccc-cceeeecccccccccccceeEEEE
Confidence 99998 666666555 5788888776554000 0000 01111111 2367889
Q ss_pred EEeecCCcEEEEecCCCCCeEEEEecCCcce
Q psy14257 744 AIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQ 774 (841)
Q Consensus 744 AvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~ 774 (841)
++.+.++.|+... ..++|.+.++.....
T Consensus 258 ~~s~~~~~l~~~~---~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 258 EFSPRHKFLYTAG---SDGIISCWNLQTRKK 285 (342)
T ss_dssp EECTTTCCEEEEE---TTSCEEEEETTTTEE
T ss_pred EEcCCCCEEEEec---CCceEEEEcCccHhH
Confidence 9998887777663 467899999975443
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.019 Score=64.69 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=51.7
Q ss_pred CCCCceeEEEcCCCCeEEE-EecCC---------CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEE
Q psy14257 442 DMESPRAIALDPRFGLLFW-TDWDS---------KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI 511 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~-td~~~---------~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~ 511 (841)
.|..|.+|++|+. |.||+ ||... .+..+++++.+....+.++.. .....|+|+++.++++.||++
T Consensus 474 ~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~----P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 474 MFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG----PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC----CTTCEEEEEEECTTSSEEEEE
T ss_pred ccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC----CCCccccCCEECCCCCEEEEE
Confidence 3789999999986 88999 88531 134899999864444445441 345789999999999999998
Q ss_pred eCCCC
Q psy14257 512 DAKSD 516 (841)
Q Consensus 512 d~~~~ 516 (841)
-..-+
T Consensus 549 vQHPG 553 (592)
T 4a9v_A 549 IQHPG 553 (592)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 65443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.73 Score=49.07 Aligned_cols=237 Identities=10% Similarity=-0.016 Sum_probs=125.2
Q ss_pred ccccceEEEEecCCCcEEEEccCC-ceEEE---EecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEE
Q psy14257 409 LWIGKNLYWVESNLDQIEVAKLSG-QFRRT---LIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIV 484 (841)
Q Consensus 409 dw~~~~LY~tD~~~~~I~v~~~~G-~~~~~---l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~ 484 (841)
.|..+..+++-...+.|.+.+++. +...+ ...+.-.....|+++|...+|.-... .+.|..-++.........
T Consensus 89 ~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~---d~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 89 TWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp EEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEE
T ss_pred EEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcEEEEE
Confidence 333344445556677888888764 32221 12233355789999998666655543 356666666533222222
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEE
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVI 562 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~ 562 (841)
. ..-.....+++.+.+..++.+-...+.|...|+........+........+..+++. +++++++-...+.|.
T Consensus 166 ~-----~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 166 R-----AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp C-----CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred c-----CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 1 233456788888777777777666788888888654332222111112234567764 456777666667777
Q ss_pred EEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee
Q psy14257 563 RANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS 642 (841)
Q Consensus 563 ~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~ 642 (841)
..+..+++.+..+..... ... ..+..|+| ..+|+.+
T Consensus 241 ~wd~~~~~~~~~~~~h~~--------------------~v~----------~v~fsp~g--------------~~~lasg 276 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQ--------------------CVT----------GLVFSPHS--------------VPFLASL 276 (344)
T ss_dssp EEESCC--CCEEEECCSS--------------------CEE----------EEEECSSS--------------SCCEEEE
T ss_pred EEECCCCcEEEEEcCCCC--------------------CEE----------EEEEccCC--------------CeEEEEE
Confidence 777665554433321100 000 01112222 1222222
Q ss_pred -cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccC
Q psy14257 643 -RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGG 701 (841)
Q Consensus 643 -~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~ 701 (841)
....|+..++.... +..+ ......+.+|+|.|..+.|+.+-...++|+..++...
T Consensus 277 s~D~~i~vwd~~~~~---~~~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 277 SEDCSLAVLDSSLSE---LFRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ETTSCEEEECTTCCE---EEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred eCCCeEEEEECCCCc---EEEE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 23445555443321 1111 1122457899999998888877667889988877643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.98 Score=46.78 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=142.9
Q ss_pred EEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCc
Q psy14257 417 WVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWP 496 (841)
Q Consensus 417 ~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P 496 (841)
.+-...+.|.+.++........+...-...+.+++.|...+|+.... .+.|...++.......... ..-...
T Consensus 29 ~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~-----~h~~~v 100 (304)
T 2ynn_A 29 LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFE-----AHPDYI 100 (304)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEEEEEETTTCCEEEEEE-----CCSSCE
T ss_pred EEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC---CCEEEEEECCCCcEEEEEe-----CCCCcE
Confidence 33334556666666543322222222234577888887666665543 4677777775433332233 233456
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCCC-eeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDGK-DHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG~-~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
..+++.+.+..|+ +-...+.|...++... .....+..+ -.....+++. ++.++.+-...+.|...+...+....
T Consensus 101 ~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~ 177 (304)
T 2ynn_A 101 RSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (304)
T ss_dssp EEEEECSSSSEEE-EEETTSCEEEEEGGGTTEEEEEECCC--CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred EEEEEcCCCCEEE-EECCCCeEEEEECCCCcchhhhhccc--CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 7899987665555 4445678888888654 333333332 1234566664 34566665566677666654333222
Q ss_pred EEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEEEec
Q psy14257 574 LIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRGVDL 652 (841)
Q Consensus 574 ~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~~~l 652 (841)
.+..... .+. ......|. +..++|+.+ ....|+..++
T Consensus 178 ~~~~~~~-------------------~~v----------~~~~~~~~-------------~~~~~l~s~s~D~~i~iWd~ 215 (304)
T 2ynn_A 178 TLTTGQE-------------------RGV----------NYVDYYPL-------------PDKPYMITASDDLTIKIWDY 215 (304)
T ss_dssp EEECCCT-------------------TCE----------EEEEECCS-------------TTCCEEEEEETTSEEEEEET
T ss_pred eeccCCc-------------------CcE----------EEEEEEEc-------------CCCCEEEEEcCCCeEEEEeC
Confidence 2111000 000 00111110 112233333 3445666666
Q ss_pred CCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEE
Q psy14257 653 EHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLV 732 (841)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 732 (841)
..... +..+. .....+..++|.|....|.-.. ..++|+..++.... ....
T Consensus 216 ~~~~~--~~~~~-~h~~~v~~~~~~p~~~~l~s~s-~Dg~i~iWd~~~~~--------------------------~~~~ 265 (304)
T 2ynn_A 216 QTKSC--VATLE-GHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYK--------------------------VEKT 265 (304)
T ss_dssp TTTEE--EEEEE-CCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCC--------------------------EEEE
T ss_pred CCCcc--ceeeC-CCCCCEEEEEECCCCCEEEEEc-CCCeEEEEECCCCc--------------------------eeee
Confidence 43321 11111 1234567899999877665544 67899999887654 3333
Q ss_pred eeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCC
Q psy14257 733 VDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEG 771 (841)
Q Consensus 733 ~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g 771 (841)
+......+..||+.+.++.+|.+. ...+.+.++++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~as--g~~~g~~~~~~~~ 302 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGRKNYIAS--GFDNGFTVLSLGN 302 (304)
T ss_dssp ECCSSSSEEEEEECTTCGGGCEEE--EETTEEEEEECC-
T ss_pred ccCCCccEEEEEECCCCCceEEEE--ecCCceEEEEecc
Confidence 444566778889888887765552 2456666666543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.23 Score=59.19 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=107.6
Q ss_pred CCEEEEccCCCcc-ccccccCcC---CCceEEEEccCCEEEEEeC----CCCeEEEEEecCC--c-cEEEEeeeeecCCC
Q psy14257 328 GGIEKAGMHGENR-SPLVTKNIQ---WPSSLVIDYNQDILYWCDS----HLNTVESVRVDGS--E-RTVSFNLEVLGSDS 396 (841)
Q Consensus 328 ~~I~~~~~dG~~~-~~l~~~~~~---~P~glavD~~~~~lYwaD~----~~~~I~~~~ldG~--~-~~~~~~~~~~~~~~ 396 (841)
.+|++.++.+... ..++...-. +-.++++.++++.|+++-. ....|+.+++++. . .+.+.... +.
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----~~ 318 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL----KA 318 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS----SS
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC----Cc
Confidence 4688888754332 223322212 3457889888888887654 2458999999876 4 44443211 00
Q ss_pred ccccCCCCCCccccccceEEEEec---CCCcEEEEccCC--ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEE
Q psy14257 397 RVGIPNCRPEDNLWIGKNLYWVES---NLDQIEVAKLSG--QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIE 471 (841)
Q Consensus 397 ~~~i~~~~~~avdw~~~~LY~tD~---~~~~I~v~~~~G--~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~ 471 (841)
.. ..++..++.||+... .+.+|.++++++ ...+.++...-....+++++ +++|+++.......+|+
T Consensus 319 ~~-------~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 319 QW-------DFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp CE-------EEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEE
T ss_pred eE-------EEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEE
Confidence 00 011234577877643 256799999886 34555554432334566665 57788776443356899
Q ss_pred EecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC---CCCeEEEEEcCCCeeEEE
Q psy14257 472 RCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA---KSDSIHTVTYDGKDHHVV 531 (841)
Q Consensus 472 r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~---~~~~I~~~~~dG~~~~~i 531 (841)
..+++|...+.+.. .......++++++.++.|+++-. .-..|+.+++++...+.+
T Consensus 390 ~~~~~g~~~~~l~~-----~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 390 AFDLDGKPAGAVSL-----PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp EEETTSCEEEECBC-----SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred EEeCCCCceeeccC-----CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 99988764433311 12233456777766677776532 235889999887665544
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0026 Score=67.69 Aligned_cols=80 Identities=25% Similarity=0.709 Sum_probs=39.1
Q ss_pred ccCCCCCeEecCCCCCCCCCCCCCCCCCccc--ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccccccccC
Q psy14257 101 DCQDVLRTCIPKALVCDGEPACFNGEDEMFC--DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176 (841)
Q Consensus 101 ~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C--~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~ 176 (841)
.|.++ +.|+. ...| .|.+||.+..| +.|. ..|.+ .|.+ .+.|.|++||. |..|+ +++|.
T Consensus 186 ~C~~~-G~C~~-~~~C----~C~~G~~G~~C~~~~C~---~~C~~~G~C~~---~~~C~C~~G~~----G~~C~-~~~C~ 248 (324)
T 2ygq_A 186 RCMNG-GLCVT-PGFC----ICPPGFYGVNCDKANCS---TTCFNGGTCFY---PGKCICPPGLE----GEQCE-ISKCP 248 (324)
T ss_dssp CCCTT-CEECS-SCCE----ECCTTCBTTTTCBCCCS---SCCCSSCCBSC---SSCBCCCTTCC----TTTTC------
T ss_pred CCCCC-CEEcC-CCEE----eCCCCccCCCcccCcCC---CCCCCCCeeCC---CCeeeCCCCcc----CCCCC-cCcCC
Confidence 57776 88976 4667 89999988778 3453 35643 6765 37999999997 56775 34553
Q ss_pred CCCCccC--ceeecCCCCceEEeecCCeee
Q psy14257 177 AWGTCSQ--DCEPSVSNNSYKCTCHAGYEL 204 (841)
Q Consensus 177 ~~~~Cs~--~C~~~~~~g~~~C~C~~G~~l 204 (841)
.+|.. .|. +.++|.|.+||..
T Consensus 249 --~~C~~~g~C~-----~~~~C~C~~G~~G 271 (324)
T 2ygq_A 249 --QPCRNGGKCI-----GKSKCKCSKGYQG 271 (324)
T ss_dssp ------------------------------
T ss_pred --CcCCCCCEEC-----CCCEEECCCCCcC
Confidence 23432 343 3579999999973
|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=74.29 Aligned_cols=35 Identities=31% Similarity=0.871 Sum_probs=31.6
Q ss_pred CCCCCCcccC-CCCCeEecCCCCCCCCCCCCCCCCCcccc
Q psy14257 94 ACEPHEFDCQ-DVLRTCIPKALVCDGEPACFNGEDEMFCD 132 (841)
Q Consensus 94 ~C~~~~~~C~-~~~~~Ci~~~~~Cdg~~~C~~g~de~~C~ 132 (841)
.| .+|+|. + +.||+..++|||..||.|++||..|.
T Consensus 67 ~c--~~f~C~~~--g~Ci~~~~~Cdg~~dC~d~sdE~~c~ 102 (537)
T 3ojy_B 67 RC--EGFVCAQT--GRCVNRRLLCNGDNDCGDQSDEANCR 102 (537)
T ss_dssp CC--SSEECTTT--CCEECGGGTTSSSCCSSSSCTTSSCS
T ss_pred CC--CccCcCCC--CcEeeccccCCCCCCCCCccccccCC
Confidence 46 689998 6 99999999999999999999998773
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.39 E-value=1.2 Score=46.62 Aligned_cols=268 Identities=9% Similarity=-0.002 Sum_probs=147.3
Q ss_pred ceEEEEecCCCcEEEEccCCceEEE--EecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRT--LIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~--l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
+.+.++-+..+.|.+.+++...... .+.........+++.+....|.-.. . ...|..-++........+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s-~--D~~i~lWd~~~~~~~~~~~----- 119 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS-L--DAHIRLWDLENGKQIKSID----- 119 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE-T--TSEEEEEETTTTEEEEEEE-----
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe-C--CCcEEEEECCCCCEEEEEe-----
Confidence 4566666667788888776543221 2333345567889988755554433 3 4677777775433322233
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCC
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g 569 (841)
..-.....+++.+.+..|. +-...+.|...++........+... -.....+++. ++.+.++-...+.|...+..++
T Consensus 120 ~~~~~~~~~~~spdg~~l~-~g~~dg~v~i~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~ 196 (321)
T 3ow8_A 120 AGPVDAWTLAFSPDSQYLA-TGTHVGKVNIFGVESGKKEYSLDTR--GKFILSIAYSPDGKYLASGAIDGIINIFDIATG 196 (321)
T ss_dssp CCTTCCCCEEECTTSSEEE-EECTTSEEEEEETTTCSEEEEEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCCccEEEEEECCCCCEEE-EEcCCCcEEEEEcCCCceeEEecCC--CceEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 2333456789987666555 4455678888888765444333322 1234567763 3555555555677777776665
Q ss_pred cceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeec-CCeEE
Q psy14257 570 SDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSR-PREIR 648 (841)
Q Consensus 570 ~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~-~~~i~ 648 (841)
+....+.... .... ..+..|++ .+|+.+. ...|+
T Consensus 197 ~~~~~~~~h~--------------------~~v~----------~l~~spd~---------------~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 197 KLLHTLEGHA--------------------MPIR----------SLTFSPDS---------------QLLVTASDDGYIK 231 (321)
T ss_dssp EEEEEECCCS--------------------SCCC----------EEEECTTS---------------CEEEEECTTSCEE
T ss_pred cEEEEEcccC--------------------Ccee----------EEEEcCCC---------------CEEEEEcCCCeEE
Confidence 5433322110 0000 01111222 2333332 33466
Q ss_pred EEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCce
Q psy14257 649 GVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQ 728 (841)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (841)
..++..... ...+ ......+..|+|.|....|+-+. ..++|+..++....
T Consensus 232 iwd~~~~~~--~~~~-~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~-------------------------- 281 (321)
T 3ow8_A 232 IYDVQHANL--AGTL-SGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRT-------------------------- 281 (321)
T ss_dssp EEETTTCCE--EEEE-CCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE--------------------------
T ss_pred EEECCCcce--eEEE-cCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCE--------------------------
Confidence 556543321 1111 11223467899999887776555 67889988886544
Q ss_pred EEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec
Q psy14257 729 IQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL 769 (841)
Q Consensus 729 ~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l 769 (841)
....+......+.+|++.+.++.|.-+ ...++|.+.++
T Consensus 282 ~~~~~~~h~~~v~~v~~s~~g~~l~s~---~~d~~i~vwd~ 319 (321)
T 3ow8_A 282 CVHTFFDHQDQVWGVKYNGNGSKIVSV---GDDQEIHIYDC 319 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEE---ETTCCEEEEEC
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEE---eCCCeEEEEeC
Confidence 222233345678889998877766655 24577887764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.69 Score=48.91 Aligned_cols=246 Identities=9% Similarity=-0.011 Sum_probs=123.5
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
.+.++.|.... . +..+-..++.|...++.++.. .....+...-.....+++.+..+.-+++-. ..++.
T Consensus 13 ~v~~~~~s~~~-~--~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--------~~dg~ 80 (379)
T 3jrp_A 13 LIHDAVLDYYG-K--RLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASC--------SYDGK 80 (379)
T ss_dssp CEEEEEECSSS-S--EEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEE--------ETTSC
T ss_pred cEEEEEEcCCC-C--EEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEe--------ccCCE
Confidence 34566666542 2 344445567777777664321 111122222223344555432112233222 23567
Q ss_pred EEEEccCCCccccc--cccCcCCCceEEEEcc--CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 330 IEKAGMHGENRSPL--VTKNIQWPSSLVIDYN--QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 330 I~~~~~dG~~~~~l--~~~~~~~P~glavD~~--~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
|..++++......+ ....-.....+++.+. +..|+.+ ...+.|...++............. .... .
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~--~~~~-------v 150 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKENGTTSPIIIDA--HAIG-------V 150 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCTTSCCCEEEEEC--CTTC-------E
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe-cCCCcEEEEecCCCCceeeEEecC--CCCc-------e
Confidence 88888765432222 2223445678888887 4555444 556788888887653221111110 0000 0
Q ss_pred Cccccc--------------cceEEEEecCCCcEEEEccCCc-eE---EEEecCCCCCceeEEEcCC---CCeEEEEecC
Q psy14257 406 EDNLWI--------------GKNLYWVESNLDQIEVAKLSGQ-FR---RTLIAGDMESPRAIALDPR---FGLLFWTDWD 464 (841)
Q Consensus 406 ~avdw~--------------~~~LY~tD~~~~~I~v~~~~G~-~~---~~l~~~~l~~P~giavd~~---~g~Ly~td~~ 464 (841)
..+.|. .+.++++-...+.|.+.++... .. ...+.........|+++|. ..+|+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~- 229 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ- 229 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-
Confidence 012222 2566666667788999887632 21 1122233456789999998 445544443
Q ss_pred CCCCeEEEecCCCCC---cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC
Q psy14257 465 SKAPRIERCSMSGEH---RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 465 ~~~~~I~r~~ldG~~---~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d 524 (841)
.+.|...+++... ...+.. ....-.....+++++.+..|+.+.. .+.|...+++
T Consensus 230 --dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~ 286 (379)
T 3jrp_A 230 --DRTCIIWTQDNEQGPWKKTLLK---EEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 286 (379)
T ss_dssp --TSCEEEEEESSTTSCCEEEESS---SSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred --CCEEEEEeCCCCCccceeeeec---cccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence 3555555554332 122211 0012234578889877777766554 5667666655
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=1.5 Score=46.77 Aligned_cols=300 Identities=10% Similarity=0.061 Sum_probs=153.0
Q ss_pred CCCceEEEEc-cCCEEEEEeCCCCeEEEEEecCCccEEEEeeee---ecCCCccccCCCCCCccccc--cceEEEEecCC
Q psy14257 349 QWPSSLVIDY-NQDILYWCDSHLNTVESVRVDGSERTVSFNLEV---LGSDSRVGIPNCRPEDNLWI--GKNLYWVESNL 422 (841)
Q Consensus 349 ~~P~glavD~-~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~---~~~~~~~~i~~~~~~avdw~--~~~LY~tD~~~ 422 (841)
.....|++.+ .++.| ++-...+.|...+++.......+.... ...... ........++.|. ++.++++-...
T Consensus 44 ~~v~~~~~s~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 44 GGINTLDIEPVEGRYM-LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP-DVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp SCEEEEEECTTTCCEE-EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT-TCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred CcEEEEEEecCCCCEE-EEEcCCCeEEEEECCCCcccceEecccccccccccc-ccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 3456788887 54444 444556788888887654332221110 000000 0000011123333 35566676677
Q ss_pred CcEEEEccCCceEEEEecCCCCCceeEEEcCCCC---eEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeE
Q psy14257 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG---LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGL 499 (841)
Q Consensus 423 ~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g---~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~gl 499 (841)
+.|.+.+++......... .......+++.+... +|+... . .+.|...++.......... ..-.....+
T Consensus 122 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~~d~~~~~~~~~~~-----~~~~~v~~~ 192 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT-R--GPKVQLCDLKSGSCSHILQ-----GHRQEILAV 192 (408)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE-S--SSSEEEEESSSSCCCEEEC-----CCCSCEEEE
T ss_pred CeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc-C--CCeEEEEeCCCcceeeeec-----CCCCcEEEE
Confidence 899999988665444333 234567788877533 444444 3 4677777776433322222 233456789
Q ss_pred EEeccCCEEEEEeCCCCeEEEEEcCCCe--eEEEEcC------------CCCCCcceEEEEe-cCeEEEEeCCCCeEEEE
Q psy14257 500 TLDYQLTRIYWIDAKSDSIHTVTYDGKD--HHVVLSN------------HDSLTHPFAIALF-ENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 500 alD~~~~~LYw~d~~~~~I~~~~~dG~~--~~~i~~~------------~~~l~~P~gla~~-~~~lY~td~~~~~i~~~ 564 (841)
++.+.+..|+++-...+.|...++.... ...+... .........+++. ++..+++-...+.|...
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9988777666666667888888886532 1111000 0011224566664 34444444445666666
Q ss_pred eccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecC
Q psy14257 565 NKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRP 644 (841)
Q Consensus 565 ~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~ 644 (841)
+..+++........ .+.... ....+.. ..+ ....+++.+..
T Consensus 273 d~~~~~~~~~~~~~---------------~~~~~~----------~~~~~~~--------~~~------~~~~~~~~~~~ 313 (408)
T 4a11_B 273 NSSNGENTLVNYGK---------------VCNNSK----------KGLKFTV--------SCG------CSSEFVFVPYG 313 (408)
T ss_dssp ETTTCCBCCCCCCC---------------CCCCCS----------SCCCCEE--------CCS------SSSCEEEEEET
T ss_pred ECCCCccceecccc---------------cccccc----------ccceeEE--------ecC------CCceEEEEecC
Confidence 65554432111100 000000 0000000 000 12344555666
Q ss_pred CeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCc
Q psy14257 645 REIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQ 702 (841)
Q Consensus 645 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~ 702 (841)
+.|+..++..... +..+. .....+.+++|.+..+.|+-.. ..+.|+..++....
T Consensus 314 ~~i~v~d~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 314 STIAVYTVYSGEQ--ITMLK-GHYKTVDCCVFQSNFQELYSGS-RDCNILAWVPSLYE 367 (408)
T ss_dssp TEEEEEETTTCCE--EEEEC-CCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEECC--
T ss_pred CEEEEEECcCCcc--eeeec-cCCCeEEEEEEcCCCCEEEEEC-CCCeEEEEeCCCCC
Confidence 7777777654321 11111 1224578899999888877665 67889988887644
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=96.28 E-value=2.4 Score=48.91 Aligned_cols=520 Identities=9% Similarity=0.003 Sum_probs=238.6
Q ss_pred CCeEEeccCcccccccccccc-EEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCC
Q psy14257 220 SPFVIFSNRHELRGVDLRTFN-VIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLST 298 (841)
Q Consensus 220 ~p~ll~s~~~~I~~~~~~~~~-~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~ 298 (841)
...++++..+.|+..++.... ...+......+.++.|.+. +. +..+-...+.|...++..+.. .....+...-..
T Consensus 30 g~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spd-g~--~lasg~~d~~v~lWd~~~~~~-~~~~~~~~~~~~ 105 (611)
T 1nr0_A 30 GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GY--YCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSGP 105 (611)
T ss_dssp SSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SS--EEEEEETTSEEEEEESSSTTC-CEEEEEECSSSC
T ss_pred CCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCC-Cc--EEEEEeCCCCEEEeECCCCcc-eeeEeecccCCc
Confidence 345555555555555554332 2233222334667778765 33 455555677787777643321 112222222234
Q ss_pred ccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEe
Q psy14257 299 AEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRV 378 (841)
Q Consensus 299 p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~l 378 (841)
...+++++.++.+. -+..+ ....++|..++. |+....+ ...-.....+++.+.+..++.+-...++|...+.
T Consensus 106 v~~v~fs~dg~~l~--~~~~~----~~~~~~v~~wd~-~~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 106 VKDISWDSESKRIA--AVGEG----RERFGHVFLFDT-GTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177 (611)
T ss_dssp EEEEEECTTSCEEE--EEECC----SSCSEEEEETTT-CCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred eEEEEECCCCCEEE--EEECC----CCceeEEEEeeC-CCCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 56677776553222 11110 011234555542 3322222 2233456678888777666666667777777765
Q ss_pred cCCccEEEEeeeeecCCCccccCCCCCCccccc-cceEEEEecCCCcEEEEccC-CceEEEEec------CCCCCceeEE
Q psy14257 379 DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI-GKNLYWVESNLDQIEVAKLS-GQFRRTLIA------GDMESPRAIA 450 (841)
Q Consensus 379 dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~-~~~LY~tD~~~~~I~v~~~~-G~~~~~l~~------~~l~~P~gia 450 (841)
........+.. ....+ .++.|. .++++.+-...+.|.+.++. |+...++.. .......+++
T Consensus 178 ~~~~~~~~l~~----H~~~V-------~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~ 246 (611)
T 1nr0_A 178 PPFKFKSTFGE----HTKFV-------HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246 (611)
T ss_dssp TTBEEEEEECC----CSSCE-------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred CCCeEeeeecc----ccCce-------EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEE
Confidence 43221111110 00000 011111 15666777777889998864 555444422 2334678999
Q ss_pred EcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEE
Q psy14257 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530 (841)
Q Consensus 451 vd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~ 530 (841)
++|...+|.-.. . ...|..-++........+... ........++.. .... +++-...+.|...++.......
T Consensus 247 ~spdg~~l~s~s-~--D~~v~lWd~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~-l~s~s~d~~i~~~~~~~~~~~~ 318 (611)
T 1nr0_A 247 WSPDGTKIASAS-A--DKTIKIWNVATLKVEKTIPVG--TRIEDQQLGIIW--TKQA-LVSISANGFINFVNPELGSIDQ 318 (611)
T ss_dssp ECTTSSEEEEEE-T--TSEEEEEETTTTEEEEEEECC--SSGGGCEEEEEE--CSSC-EEEEETTCCEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEe-C--CCeEEEEeCCCCceeeeecCC--CCccceeEEEEE--cCCE-EEEEeCCCcEEEEeCCCCCcce
Confidence 999755554443 3 456666666432221111100 000111233333 2333 3344445677777776654433
Q ss_pred EEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCC-CceeccCCcccCCCCCCCCCCcccccc
Q psy14257 531 VLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQ-PFIYVNGVVKKSPCEMNNGNCSHLCLI 608 (841)
Q Consensus 531 i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~-p~~~h~qp~~~n~C~~~ng~Cs~lC~~ 608 (841)
....+ .....++++. ++...++-...+.|...+..++.....+...... ...+...+...-...... ..+-+.
T Consensus 319 ~~~gh--~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d---~~v~~w 393 (611)
T 1nr0_A 319 VRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD---DHLKVV 393 (611)
T ss_dssp EECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETT---TEEEEE
T ss_pred EEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcC---CceEEe
Confidence 33332 2334667773 3444455555677777776555432221100000 000000000000000000 000000
Q ss_pred CCCCceeeeCCCC--ceeecCCCcc--cccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEE
Q psy14257 609 GMNGTYKCQCPHV--MKLMSDNKTC--QVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIY 684 (841)
Q Consensus 609 ~~~~~~~C~Cp~g--~~l~~d~~tC--~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iy 684 (841)
...+. .+.-... ..+.. ...+ ..+...+++.+..+.+..... . .+..++ ....+.+++|.|..+.|.
T Consensus 394 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~s~dg~~~~~~~~~~v~~~~~--~---~~~~~~--~~~~v~~va~spdg~~la 464 (611)
T 1nr0_A 394 PAGGS-GVDSSKAVANKLSS-QPLGLAVSADGDIAVAACYKHIAIYSH--G---KLTEVP--ISYNSSCVALSNDKQFVA 464 (611)
T ss_dssp CSSSS-SSCTTSCCEEECSS-CEEEEEECTTSSCEEEEESSEEEEEET--T---EEEEEE--CSSCEEEEEECTTSCEEE
T ss_pred ecCCc-cccccceeeeecCC-CCcEEEEeCCCcEEEEEeCceEEEEeC--C---ceeeee--cCCCceEEEEeCCCCEEE
Confidence 00000 0000000 00000 0000 001112334444444443331 1 011122 123567899999887776
Q ss_pred EEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeE
Q psy14257 685 WTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKI 764 (841)
Q Consensus 685 w~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I 764 (841)
... ..++|+..++.+..... ... ......+..|++.+.++.|.-+. ..++|
T Consensus 465 sgs-~D~~v~lwd~~~~~~~~-----------------------~~~--~~h~~~v~~v~fspdg~~las~s---~d~~v 515 (611)
T 1nr0_A 465 VGG-QDSKVHVYKLSGASVSE-----------------------VKT--IVHPAEITSVAFSNNGAFLVATD---QSRKV 515 (611)
T ss_dssp EEE-TTSEEEEEEEETTEEEE-----------------------EEE--EECSSCEEEEEECTTSSEEEEEE---TTSCE
T ss_pred EeC-CCCeEEEEEccCCceee-----------------------eec--cCCCCceEEEEECCCCCEEEEEc---CCCCE
Confidence 665 67889888887644100 011 23445689999999988777763 46789
Q ss_pred EEEecCC--cceEE-EEc-CCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCC
Q psy14257 765 VVCNLEG--EYQTT-ILS-NESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 765 ~v~~l~g--~~~~~-~~~-~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~ 823 (841)
.+.++.. +...+ +.. . -....++++.|...+|.-.... .+|.--+++..
T Consensus 516 ~~w~~~~~~~~~~~~~~~~H-------~~~V~~v~fspdg~~lasgs~D---~~v~lW~~~~~ 568 (611)
T 1nr0_A 516 IPYSVANNFELAHTNSWTFH-------TAKVACVSWSPDNVRLATGSLD---NSVIVWNMNKP 568 (611)
T ss_dssp EEEEGGGTTEESCCCCCCCC-------SSCEEEEEECTTSSEEEEEETT---SCEEEEETTCT
T ss_pred EEEEcCCCCceeeeeeeeec-------ccceeEEEECCCCCEEEEEECC---CcEEEEECCCc
Confidence 9998864 22111 111 1 2467889999976555443332 24555556543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.054 Score=64.26 Aligned_cols=283 Identities=11% Similarity=-0.019 Sum_probs=136.1
Q ss_pred CCCeEEEEEecCCcccceEEEEeCC-C--CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcc---cccc
Q psy14257 271 IDDKIYNATLIGNSLSNIDVVVQTG-L--STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENR---SPLV 344 (841)
Q Consensus 271 ~~~~I~~~~~~~~~~~~~~~~~~~~-l--~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~---~~l~ 344 (841)
..+.|+..++.++. ...++... . .....+++.|.++.+.+.-..-+.. ....++.|...++++... ..+.
T Consensus 34 ~d~~i~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~-~~s~~~~i~~~d~~~g~~~~~~~l~ 109 (719)
T 1z68_A 34 ADNNIVLYNIETGQ---SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLW-RYSYTATYYIYDLSNGEFVRGNELP 109 (719)
T ss_dssp TTSCEEEEESSSCC---EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECS-SSCEEEEEEEEETTTTEECCSSCCC
T ss_pred CCCCEEEEEcCCCc---EEEEEccccccccceeeEEECCCCCeEEEEecCceeE-EeecceEEEEEECCCCccccceecC
Confidence 35667777666553 22222211 0 0245677777665444321110000 001235788898887655 4432
Q ss_pred ccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccC----------CCCCCccccccce
Q psy14257 345 TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIP----------NCRPEDNLWIGKN 414 (841)
Q Consensus 345 ~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~----------~~~~~avdw~~~~ 414 (841)
.....+++.+++++|.++. .+.|+..+++++..+.+....... ....|.+ .....+....++.
T Consensus 110 ----~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~-~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~ 182 (719)
T 1z68_A 110 ----RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGREN-KIFNGIPDWVYEEEMLATKYALWWSPNGKF 182 (719)
T ss_dssp ----SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTT-TEEESSCCHHHHHHTTCSSCCEEECTTSSE
T ss_pred ----cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcC-CeEcccccceeeeecccCcccEEECCCCCE
Confidence 3466788999888888774 468888888766554432111000 0000000 0001122223455
Q ss_pred EEEEecC---------------------------------CCcEEEEccCCceEE---EEe-----cCCCCCceeEEEcC
Q psy14257 415 LYWVESN---------------------------------LDQIEVAKLSGQFRR---TLI-----AGDMESPRAIALDP 453 (841)
Q Consensus 415 LY~tD~~---------------------------------~~~I~v~~~~G~~~~---~l~-----~~~l~~P~giavd~ 453 (841)
|+++... ...|.+.++++.... .+. .........+++.|
T Consensus 183 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp 262 (719)
T 1z68_A 183 LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT 262 (719)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS
T ss_pred EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC
Confidence 5554321 115666666654321 111 01122346889999
Q ss_pred CCCeEEEE--ecCCCCCeEEEec----CCCCCcEEEEE---ecccCCCCC--CceeEEEeccCCEEEEE-eC--CCCeEE
Q psy14257 454 RFGLLFWT--DWDSKAPRIERCS----MSGEHRSVIVR---VDLLTSRGA--WPNGLTLDYQLTRIYWI-DA--KSDSIH 519 (841)
Q Consensus 454 ~~g~Ly~t--d~~~~~~~I~r~~----ldG~~~~~i~~---~~~~~~~~~--~P~glalD~~~~~LYw~-d~--~~~~I~ 519 (841)
+ |.+.++ +......+|+..+ +++.....+.. .. ....+. ....+++.+++++||+. .. +...|+
T Consensus 263 D-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 263 D-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES-RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp S-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC-SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred C-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc-CCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 8 655555 3221234688888 55432222220 00 001111 11267788777777763 22 234788
Q ss_pred EEEcCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCC------CCeEEEEeccCC
Q psy14257 520 TVTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWR------TNSVIRANKWNG 569 (841)
Q Consensus 520 ~~~~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~------~~~i~~~~~~~g 569 (841)
.+++++...+.+...... ..++.. .++.||++... ...+++++..+|
T Consensus 341 ~~~~~~~~~~~lt~~~~~---v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 341 YIKDTVENAIQITSGKWE---AINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EESSCSTTCEECSCSSSC---EEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EEECCCCceEecccCceE---EEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 888887765544322111 122222 56778887654 245666665444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=2.7 Score=49.37 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=129.2
Q ss_pred cCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccccc-----CcCCCceEEEEccCCEEEEE-eCCC---CeEEEEEe
Q psy14257 308 GKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTK-----NIQWPSSLVIDYNQDILYWC-DSHL---NTVESVRV 378 (841)
Q Consensus 308 ~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~-----~~~~P~glavD~~~~~lYwa-D~~~---~~I~~~~l 378 (841)
++..|.+|.+-+. .-..+.|...++.....|... ....-.++++.+++++|-++ |... ..|+..++
T Consensus 88 g~~~y~~~~~~~~-----~~~~~~r~~~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl 162 (693)
T 3iuj_A 88 GRYHYFFKNDGLQ-----NQNVLWRQQEGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV 162 (693)
T ss_dssp TTEEEEEEECSSC-----SSCEEEEECTTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET
T ss_pred CCEEEEEEEcCCC-----ceeEEEEeCCCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC
Confidence 4556666665432 223566655555433222211 12234577888888877654 4322 46888999
Q ss_pred cCCccEEEEeeeeecCCCccccCCCCCCccccc-cceEEEEecC------------CCcEEEEccCCce--EEEEecCCC
Q psy14257 379 DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI-GKNLYWVESN------------LDQIEVAKLSGQF--RRTLIAGDM 443 (841)
Q Consensus 379 dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~-~~~LY~tD~~------------~~~I~v~~~~G~~--~~~l~~~~l 443 (841)
+++..........-. ..+.|. ++.||++... ..+|++.++.... .+.+....-
T Consensus 163 ~tg~~~~~~~~~~k~------------~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~ 230 (693)
T 3iuj_A 163 ESKQPLETPLKDVKF------------SGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP 230 (693)
T ss_dssp TTCSEEEEEEEEEES------------CCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG
T ss_pred CCCCCCccccCCcee------------ccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC
Confidence 877654332111100 123343 3557766433 2457777775432 223332211
Q ss_pred ---CCceeEEEcCCCCeEEEEecCC-CCCeEEEecCCCC--CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC---
Q psy14257 444 ---ESPRAIALDPRFGLLFWTDWDS-KAPRIERCSMSGE--HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--- 514 (841)
Q Consensus 444 ---~~P~giavd~~~g~Ly~td~~~-~~~~I~r~~ldG~--~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--- 514 (841)
..-.+++++|...+|+++.... ....|+..++++. ..+.+.. ....-... +++.+++||+....
T Consensus 231 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~------~~~~~~~~-~~~~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 231 AQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG------DLDADVSL-VDNKGSTLYLLTNRDAP 303 (693)
T ss_dssp GGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC------SSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred CCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC------CCCceEEE-EeccCCEEEEEECCCCC
Confidence 1235788999988888876432 2358999998754 3344432 11111111 55667888876532
Q ss_pred CCeEEEEEcCCCee---EEEEcCCCCCCcceEEEEecCeEEEEeCCCC--eEEEEecc
Q psy14257 515 SDSIHTVTYDGKDH---HVVLSNHDSLTHPFAIALFENHVYWTDWRTN--SVIRANKW 567 (841)
Q Consensus 515 ~~~I~~~~~dG~~~---~~i~~~~~~l~~P~gla~~~~~lY~td~~~~--~i~~~~~~ 567 (841)
+.+|.++++++... +.+...... .. +++.++++|+++....+ .|..++..
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~--~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQ--VL-TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSS--CE-EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred CCEEEEEeCCCCCccccEEEecCCCC--EE-EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 46999999987554 555544321 22 77788899888765443 56666544
|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=50.67 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=24.9
Q ss_pred ccccccCCCCC--CCcccCCCCcEEe-cCCCceecCCCCcc
Q psy14257 132 DEKQCLRSDCH--HDCYNTPEGFMCV-CPRDMYLQPDLITC 169 (841)
Q Consensus 132 ~eC~~~~~~C~--~~C~~~~g~~~C~-C~~Gy~l~~d~~~C 169 (841)
+||....+.|. +.|+|++|+|+|. |..||.+..++..+
T Consensus 4 dEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~~~ 44 (71)
T 2kl7_A 4 NECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGP 44 (71)
T ss_dssp CCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCSSC
T ss_pred ccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCCcc
Confidence 45654455674 3789999999997 44667665555443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.96 Score=47.78 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=115.6
Q ss_pred CCCEEEEccCCCccccc--cccCcCCCceEEEEcc--CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 327 DGGIEKAGMHGENRSPL--VTKNIQWPSSLVIDYN--QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l--~~~~~~~P~glavD~~--~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
++.|..+++++.....+ ....-.....|++.+. ++.|+.+. ..+.|...+++......+...... ...
T Consensus 32 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~--~~~----- 103 (379)
T 3jrp_A 32 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-YDGKVLIWKEENGRWSQIAVHAVH--SAS----- 103 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSCEEEEEEETTEEEEEEEECCC--SSC-----
T ss_pred CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec-cCCEEEEEEcCCCceeEeeeecCC--Ccc-----
Confidence 34566666543222222 1122234456777655 45555444 467888888876643322221110 000
Q ss_pred CCCCcccccc---ceEEEEecCCCcEEEEccCCc--eEEEEecCCCCCceeEEEcCC------------CCeEEEEecCC
Q psy14257 403 CRPEDNLWIG---KNLYWVESNLDQIEVAKLSGQ--FRRTLIAGDMESPRAIALDPR------------FGLLFWTDWDS 465 (841)
Q Consensus 403 ~~~~avdw~~---~~LY~tD~~~~~I~v~~~~G~--~~~~l~~~~l~~P~giavd~~------------~g~Ly~td~~~ 465 (841)
..++.|.. +.++++-...+.|.+.++... .....+.........++++|. ++.++++-..
T Consensus 104 --v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 180 (379)
T 3jrp_A 104 --VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA- 180 (379)
T ss_dssp --EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET-
T ss_pred --eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC-
Confidence 01233322 345555566788998888654 222233334456788999984 3444444433
Q ss_pred CCCeEEEecCCCCCc-EEEE-EecccCCCCCCceeEEEeccC--CEEEEEeCCCCeEEEEEcCCCe---eEEEEcCCCCC
Q psy14257 466 KAPRIERCSMSGEHR-SVIV-RVDLLTSRGAWPNGLTLDYQL--TRIYWIDAKSDSIHTVTYDGKD---HHVVLSNHDSL 538 (841)
Q Consensus 466 ~~~~I~r~~ldG~~~-~~i~-~~~~~~~~~~~P~glalD~~~--~~LYw~d~~~~~I~~~~~dG~~---~~~i~~~~~~l 538 (841)
.+.|...++..... ..+. .. ...-.....+++.+.. ++++.+-...+.|...++.... ...+.......
T Consensus 181 -dg~i~i~d~~~~~~~~~~~~~~---~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 256 (379)
T 3jrp_A 181 -DNLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 256 (379)
T ss_dssp -TSCEEEEEEETTTTEEEEEEEE---CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS
T ss_pred -CCeEEEEEecCCCcceeeEEEE---ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCC
Confidence 35666666643322 2222 21 0223456789998763 4555555556788888887642 22333221112
Q ss_pred CcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 539 THPFAIALF-ENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 539 ~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
.....+++. ++.++++-...+.|...+...+..
T Consensus 257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 234566763 344333333356666666544433
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=1.7 Score=46.27 Aligned_cols=121 Identities=7% Similarity=-0.006 Sum_probs=56.5
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec-cCCEEEEEeCCCCeEEEEE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY-QLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~-~~~~LYw~d~~~~~I~~~~ 522 (841)
.....++++|...+|+.... .+.|...++.............. .....+..+.+.. ....+.++ ...+.|...+
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~d 320 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGT---DNRMRLWNSSNGENTLVNYGKVC-NNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVYT 320 (408)
T ss_dssp SCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCBCCCCCCCCC-CCCSSCCCCEECCSSSSCEEEE-EETTEEEEEE
T ss_pred CceeEEEEcCCCCEEEEecC---CCeEEEEECCCCccceecccccc-ccccccceeEEecCCCceEEEE-ecCCEEEEEE
Confidence 45678999987666666553 35676666654322111110000 0001111111111 12233333 2246777777
Q ss_pred cCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 523 YDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 523 ~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
+........+..+ ......+++. ++.++++-...+.|...+..+++.
T Consensus 321 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 321 VYSGEQITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp TTTCCEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred CcCCcceeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 6654443333322 2334677774 345555655567777777655543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=96.08 E-value=2 Score=46.08 Aligned_cols=291 Identities=11% Similarity=-0.013 Sum_probs=149.3
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
..+.+++|.+.. . +..+-..++.|...++..+. ....+.........+++.+.++ +++- ...++
T Consensus 67 ~~V~~~~~sp~~-~--~l~s~s~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g~--~las--------~~~d~ 130 (380)
T 3iz6_a 67 GKVYSLDWTPEK-N--WIVSASQDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNGQ--SVAC--------GGLDS 130 (380)
T ss_dssp SCEEEEEECTTS-S--CEEEEETTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTSS--EEEE--------CCSSS
T ss_pred cEEEEEEEcCCC-C--EEEEEeCCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCCC--EEEE--------eeCCC
Confidence 346678887753 3 45565667788777765543 2223333334456677776542 2221 22345
Q ss_pred CEEEEccCCCc-------cccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeee-cCCCcccc
Q psy14257 329 GIEKAGMHGEN-------RSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL-GSDSRVGI 400 (841)
Q Consensus 329 ~I~~~~~dG~~-------~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~-~~~~~~~i 400 (841)
.|..+++.... ........-.....+++.+..+..+++-...+.|...++........+..... +...
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~---- 206 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA---- 206 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS----
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc----
Confidence 66666654211 01111112223344555555555555666677787777765444333211100 0000
Q ss_pred CCCCCCccc--cccceEEEEecCCCcEEEEccC-C-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC
Q psy14257 401 PNCRPEDNL--WIGKNLYWVESNLDQIEVAKLS-G-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 401 ~~~~~~avd--w~~~~LY~tD~~~~~I~v~~~~-G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld 476 (841)
....+. ..+++++++-...+.|.+.++. + ....++ .........|+++|...+ +.+-.. .+.|...++.
T Consensus 207 ---~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~-l~s~s~--D~~i~lwd~~ 279 (380)
T 3iz6_a 207 ---DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQR-FGTGSD--DGTCRLFDMR 279 (380)
T ss_dssp ---CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSE-EEEECS--SSCEEEEETT
T ss_pred ---CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCe-EEEEcC--CCeEEEEECC
Confidence 001112 2247788888788899999885 2 333333 333456789999997544 455433 4667777765
Q ss_pred CCCcEEEEEeccc--CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee-EEEEcC-CCCCCcceEEEEe-cCeE
Q psy14257 477 GEHRSVIVRVDLL--TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH-HVVLSN-HDSLTHPFAIALF-ENHV 551 (841)
Q Consensus 477 G~~~~~i~~~~~~--~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~-~~i~~~-~~~l~~P~gla~~-~~~l 551 (841)
............. .........+++.+.+..|+ +-...+.|...++..... ..+... ...-.....|++. ++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF-AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE-EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEE-EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 4333222221000 01122357899987655554 555578899888765433 333111 0011223567773 4555
Q ss_pred EEEeCCCCeEEEEecc
Q psy14257 552 YWTDWRTNSVIRANKW 567 (841)
Q Consensus 552 Y~td~~~~~i~~~~~~ 567 (841)
+++-...+.|...+..
T Consensus 359 l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 359 LCTGSWDKNLKIWAFS 374 (380)
T ss_dssp EEEECTTSCEEEEECC
T ss_pred EEEeeCCCCEEEEecC
Confidence 5665556666655543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.81 Score=53.89 Aligned_cols=236 Identities=9% Similarity=0.060 Sum_probs=133.0
Q ss_pred eecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccC-c-----CCCceEEEEccCCEEEEEeCC----CCeEEE
Q psy14257 306 WIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKN-I-----QWPSSLVIDYNQDILYWCDSH----LNTVES 375 (841)
Q Consensus 306 ~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~-~-----~~P~glavD~~~~~lYwaD~~----~~~I~~ 375 (841)
+.++.+|+++.+.+ ...+.|++...+|...++|...+ + ..-.++++.+++++|.++-.. ...|+.
T Consensus 77 ~dG~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 77 RRNGRFFYVRTHKD-----KEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp EETTEEEEEEECTT-----CSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred EECCEEEEEEEcCC-----CeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence 44666776665433 12457888887766666554321 1 134578899998888776432 257999
Q ss_pred EEecCCccEEEEeeeeecCCCccccCCCCCCcccc--ccceEEEEecC------------CCcEEEEccCCce--EEEEe
Q psy14257 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW--IGKNLYWVESN------------LDQIEVAKLSGQF--RRTLI 439 (841)
Q Consensus 376 ~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw--~~~~LY~tD~~------------~~~I~v~~~~G~~--~~~l~ 439 (841)
.+++++..... .. +.......+.| .+..||++... ..+|++.++.+.. .+.+.
T Consensus 152 ~dl~tg~~~~~---~~--------~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 152 IDVDSGEWSKV---DV--------IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp EETTTCCBCSS---CC--------BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred EECCCCCCcCC---cc--------cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 99987654200 00 00000013444 34567776542 2348888887543 22222
Q ss_pred cCC--CCCceeEEEcCCCCeEEEEecCC-CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC---
Q psy14257 440 AGD--MESPRAIALDPRFGLLFWTDWDS-KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA--- 513 (841)
Q Consensus 440 ~~~--l~~P~giavd~~~g~Ly~td~~~-~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~--- 513 (841)
... ...-.+++++|++.+|+++.... ....|+..+..+...+.+... ........ .+.++ ||+...
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~------~~~~~~~~-~~~g~-l~~~s~~~~ 292 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG------VGAKYEVH-AWKDR-FYVLTDEGA 292 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC------SSCCEEEE-EETTE-EEEEECTTC
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC------CCceEEEE-ecCCc-EEEEECCCC
Confidence 221 12345889999988888876542 245788887655555555541 11222232 24455 777543
Q ss_pred CCCeEEEEEcCCCee---EEEEcCCCCCCcceEEEEecCeEEEEeCCCC--eEEEEec
Q psy14257 514 KSDSIHTVTYDGKDH---HVVLSNHDSLTHPFAIALFENHVYWTDWRTN--SVIRANK 566 (841)
Q Consensus 514 ~~~~I~~~~~dG~~~---~~i~~~~~~l~~P~gla~~~~~lY~td~~~~--~i~~~~~ 566 (841)
.+.+|..+++++... +.++.... -....++++++++|+++-...+ +|..++.
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEIVPEDS-SASLLSVSIVGGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEEECCCS-SCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CCCEEEEEeCCCCCccCCeEEecCCC-CCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 357999999976542 44543321 1123567777888888765443 4445553
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.04 E-value=1.2 Score=52.38 Aligned_cols=234 Identities=13% Similarity=0.050 Sum_probs=120.8
Q ss_pred CeEEEEEecCCcccceEEEEeCC-C-----CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccc-cccc
Q psy14257 273 DKIYNATLIGNSLSNIDVVVQTG-L-----STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRS-PLVT 345 (841)
Q Consensus 273 ~~I~~~~~~~~~~~~~~~~~~~~-l-----~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~-~l~~ 345 (841)
..|++.+..++. .++++... + ....++++.|.++.+.+ -.+.+ ......|...++++.... ....
T Consensus 94 ~~l~~~~~~~~~---~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~-~~~~~----G~~~~~i~v~dl~tg~~~~~~~~ 165 (695)
T 2bkl_A 94 AILYWRQGESGQ---EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAF-AQKPN----AADEAVLHVIDVDSGEWSKVDVI 165 (695)
T ss_dssp CEEEEEESTTSC---CEEEECGGGSSSSSCEEEEEEEECTTSSEEEE-EEEET----TCSCCEEEEEETTTCCBCSSCCB
T ss_pred EEEEEEcCCCCC---cEEEEchHHhccCCCEEEEEEEECCCCCEEEE-EECCC----CCceEEEEEEECCCCCCcCCccc
Confidence 457777665543 34444321 1 12345667665543332 22221 112357999998876543 1111
Q ss_pred cCcCCCceEEEEccCCEEEEEeCC------------CCeEEEEEecCCcc--EEEEeeeeecCCCccccCCCCCCccccc
Q psy14257 346 KNIQWPSSLVIDYNQDILYWCDSH------------LNTVESVRVDGSER--TVSFNLEVLGSDSRVGIPNCRPEDNLWI 411 (841)
Q Consensus 346 ~~~~~P~glavD~~~~~lYwaD~~------------~~~I~~~~ldG~~~--~~~~~~~~~~~~~~~~i~~~~~~avdw~ 411 (841)
... ...++++.++++.||++... ...|++.++.+... +.++.... ......+ .++...
T Consensus 166 ~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-~~~~~~~------~~~SpD 237 (695)
T 2bkl_A 166 EGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-DPTTFLQ------SDLSRD 237 (695)
T ss_dssp SCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-CTTCEEE------EEECTT
T ss_pred Ccc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC-CCEEEEE------EEECCC
Confidence 111 12689999999999998763 23599999876653 23332110 0000000 012223
Q ss_pred cceEEEEecC---CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEE-ecCCCCCeEEEecCCCCCc---EEEE
Q psy14257 412 GKNLYWVESN---LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWT-DWDSKAPRIERCSMSGEHR---SVIV 484 (841)
Q Consensus 412 ~~~LY~tD~~---~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~t-d~~~~~~~I~r~~ldG~~~---~~i~ 484 (841)
++.|+++... ...|++.+..+...+.+... .......+. +.++ ||+. +++....+|++.++++... +.++
T Consensus 238 G~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 314 (695)
T 2bkl_A 238 GKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG-VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV 314 (695)
T ss_dssp SCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC-SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred CCEEEEEEeCCCCceEEEEEcCCCCceEEeecC-CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence 3556654432 34677776644333333322 222233333 4555 5554 4443468999999976553 4554
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCCeeEEE
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGKDHHVV 531 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i 531 (841)
.. ..-....++++. +++|+++-.. ..+|+.++++|...+.+
T Consensus 315 ~~----~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 315 PE----DSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp CC----CSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred cC----CCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence 31 112223566765 6778776543 34778888888755544
|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0025 Score=77.71 Aligned_cols=41 Identities=41% Similarity=1.017 Sum_probs=33.5
Q ss_pred CCCC-CCCCC------CCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 26 HCQD-RKCDE------SHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 26 ~C~~-~~C~~------~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.|.. ..|+. ++|+|. +++||+..|+|||..||. |+|||.+|
T Consensus 105 ~C~~~~~Cp~~~~~C~~~F~C~-~g~ci~~~~~c~g~~dC~--d~sde~~C 152 (913)
T 3t5o_A 105 PCIPSKLCKIEEADCKNKFRCD-SGRCIARKLECNGENDCG--DNSDERDC 152 (913)
T ss_dssp ECCCSSSSCCCCCCCSSEEECT-TSCEEEGGGSSSSSCCSS--SSGGGTTC
T ss_pred ccCCccCCCccccCcccccccC-CCceEccceecCCcccCC--CccccccC
Confidence 5654 44533 569998 899999999999999999 99988765
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0028 Score=59.95 Aligned_cols=40 Identities=30% Similarity=0.764 Sum_probs=34.3
Q ss_pred cccccc-CCCCCCCcccCCCCcEEecCCCceecCCCCcccc
Q psy14257 132 DEKQCL-RSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 132 ~eC~~~-~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
+||... ...|++.|.|++++|.|.|.+||.|..++++|++
T Consensus 118 ~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 118 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred cccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence 578653 3579999999999999999999999999999975
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.93 E-value=2.2 Score=45.39 Aligned_cols=196 Identities=13% Similarity=0.085 Sum_probs=114.6
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEe--CCCCCccceEEeeecCceeEEEeeecCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQ--TGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSS 326 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~--~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~ 326 (841)
..+.++.|...... ++.+-..++.|...++.++. ....+. ..-.....+++.+..++ +++-. ..
T Consensus 74 ~~v~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~--------~~ 139 (383)
T 3ei3_B 74 RRVTSLEWHPTHPT--TVAVGSKGGDIILWDYDVQN---KTSFIQGMGPGDAITGMKFNQFNTN-QLFVS--------SI 139 (383)
T ss_dssp SCEEEEEECSSCTT--EEEEEEBTSCEEEEETTSTT---CEEEECCCSTTCBEEEEEEETTEEE-EEEEE--------ET
T ss_pred CCEEEEEECCCCCC--EEEEEcCCCeEEEEeCCCcc---cceeeecCCcCCceeEEEeCCCCCC-EEEEE--------eC
Confidence 45678888776424 66666677888888887554 222222 12234455666542112 22221 23
Q ss_pred CCCEEEEccCCCccccccccC--cCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKN--IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~--~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
++.|..+++.+.....+.... -.....+++.+.+..|+.+. ..+.|...++++.....+.... ..
T Consensus 140 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~h~-----~~------- 206 (383)
T 3ei3_B 140 RGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD-STGRLLLLGLDGHEIFKEKLHK-----AK------- 206 (383)
T ss_dssp TTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEE-TTSEEEEEETTSCEEEEEECSS-----SC-------
T ss_pred CCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEEC-CCCCEEEEECCCCEEEEeccCC-----Cc-------
Confidence 568888888875555443322 24567899998877766554 5578988888766444432110 00
Q ss_pred CCcccc--ccceEEEEecCCCcEEEEccCC-----ceEEEEecCCCCCceeEEEcC-CCCeEEEEecCCCCCeEEEecCC
Q psy14257 405 PEDNLW--IGKNLYWVESNLDQIEVAKLSG-----QFRRTLIAGDMESPRAIALDP-RFGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 405 ~~avdw--~~~~LY~tD~~~~~I~v~~~~G-----~~~~~l~~~~l~~P~giavd~-~~g~Ly~td~~~~~~~I~r~~ld 476 (841)
..++.| .+..++++-...+.|.+.++.. .....+ ........|+++| ...+|+.+.. .+.|...++.
T Consensus 207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~---d~~i~iwd~~ 281 (383)
T 3ei3_B 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQ---RNEIRVYSSY 281 (383)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEES---SSEEEEEETT
T ss_pred EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcC---CCcEEEEECC
Confidence 011222 2233677777778899998863 344444 2345788999999 6555555443 4677777775
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=1.8 Score=44.22 Aligned_cols=273 Identities=11% Similarity=0.048 Sum_probs=139.5
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
.+.++.| .. +. ++.+-..++.|...++.++. ....+...-.....+++.+.++ +++.. ..++.
T Consensus 20 ~v~~~~~-~~-~~--~l~s~~~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~l~~~--------~~dg~ 82 (313)
T 3odt_A 20 DVRDVVA-VD-DS--KVASVSRDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKE--LLLFG--------GKDTM 82 (313)
T ss_dssp CEEEEEE-EE-TT--EEEEEETTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTTT--EEEEE--------ETTSC
T ss_pred CcEEEEe-cC-CC--EEEEEEcCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCCC--EEEEe--------cCCCe
Confidence 3556666 33 33 45555667788887776543 2223333344566677776442 22222 23456
Q ss_pred EEEEccCCCc-ccccc--ccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 330 IEKAGMHGEN-RSPLV--TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 330 I~~~~~dG~~-~~~l~--~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
|..+++.... ...+. ...-.....+++ .++.|+ +-...+.|...+ .+.....+.. . ... ..
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~-~~~~d~~i~~~d-~~~~~~~~~~---~--~~~-------v~ 146 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVI-SGSWDKTAKVWK-EGSLVYNLQA---H--NAS-------VW 146 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEE-EEETTSEEEEEE-TTEEEEEEEC---C--SSC-------EE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEE-EEeCCCCEEEEc-CCcEEEeccc---C--CCc-------ee
Confidence 6666654321 11111 112223345555 344444 444556677666 2222111110 0 000 00
Q ss_pred ccccc--cceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEE
Q psy14257 407 DNLWI--GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIV 484 (841)
Q Consensus 407 avdw~--~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~ 484 (841)
.+.|. .++++++-...+.|.+.+ .++....+..........+++.|. +.|+... . .+.|...++.........
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~-~--dg~i~i~d~~~~~~~~~~ 221 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDD-GHFISCS-N--DGLIKLVDMHTGDVLRTY 221 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEET-TEEEEEE-T--TSEEEEEETTTCCEEEEE
T ss_pred EEEEccCCCCEEEEEECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCC-CeEEEcc-C--CCeEEEEECCchhhhhhh
Confidence 11111 255555556677888887 333333433324456788999986 4444443 3 567888887643333333
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEE
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIR 563 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~ 563 (841)
. ..-.....+++.+.+ +|+. -...+.|...++........+..+ ......+++. ++.+ ++-...+.|..
T Consensus 222 ~-----~~~~~i~~~~~~~~~-~l~~-~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~-~~~~~dg~i~i 291 (313)
T 3odt_A 222 E-----GHESFVYCIKLLPNG-DIVS-CGEDRTVRIWSKENGSLKQVITLP--AISIWSVDCMSNGDI-IVGSSDNLVRI 291 (313)
T ss_dssp E-----CCSSCEEEEEECTTS-CEEE-EETTSEEEEECTTTCCEEEEEECS--SSCEEEEEECTTSCE-EEEETTSCEEE
T ss_pred h-----cCCceEEEEEEecCC-CEEE-EecCCEEEEEECCCCceeEEEecc--CceEEEEEEccCCCE-EEEeCCCcEEE
Confidence 3 234557889998755 5554 445688999998655443333332 2234677774 3454 44445667776
Q ss_pred EeccCCc
Q psy14257 564 ANKWNGS 570 (841)
Q Consensus 564 ~~~~~g~ 570 (841)
.+..+++
T Consensus 292 w~~~~~~ 298 (313)
T 3odt_A 292 FSQEKSR 298 (313)
T ss_dssp EESCGGG
T ss_pred EeCCCCc
Confidence 6655544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=2 Score=44.84 Aligned_cols=121 Identities=5% Similarity=-0.035 Sum_probs=72.6
Q ss_pred CCCCceeEEEcCCC--CeEEEEecCCCCCeEEEecCCC--CCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCe
Q psy14257 442 DMESPRAIALDPRF--GLLFWTDWDSKAPRIERCSMSG--EHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDS 517 (841)
Q Consensus 442 ~l~~P~giavd~~~--g~Ly~td~~~~~~~I~r~~ldG--~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~ 517 (841)
.-.....|+++|.. |.+.++-.. .+.|...+++. ........ ..-.....+++.+.+..|+.+. ..+.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~-~dg~ 109 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSW--ANDVRCWEVQDSGQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTAS-CDKT 109 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEET--TSEEEEEEECTTSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEE-TTSE
T ss_pred CCCceEEEEEcCCCCCceEEEEECC--CCcEEEEEcCCCCceeEEEec-----cccCCEEEEEECcCCCEEEEEc-CCCc
Confidence 34567889999986 555555433 45666666653 33222232 2344568899987666666554 4678
Q ss_pred EEEEEcCCCeeEEEEcCCCCCCcceEEEE--e-cCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 518 IHTVTYDGKDHHVVLSNHDSLTHPFAIAL--F-ENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 518 I~~~~~dG~~~~~i~~~~~~l~~P~gla~--~-~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
|...+++......+.... .....+++ . ++.++++-...+.|...+..+++...
T Consensus 110 v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEEEETTTTEEEEEEECS---SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred EEEEEcCCCCceeecccc---CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence 999999877665544322 23466666 3 35555555556777777665554443
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0017 Score=66.33 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=34.9
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCcccccccc
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
|||....+.|+. .|.|++|+|.|.|++||. .+|..|.++++.
T Consensus 6 DEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~--GnG~~C~d~d~P 49 (285)
T 1gl4_A 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVAEGSP 49 (285)
T ss_dssp -CHHHHGGGSCTTEEEEECSSCEEEEECTTEE--ECSSSEEETTCE
T ss_pred hhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC--CCCCcCCCCCCC
Confidence 678765678864 799999999999999998 578899998765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=95.84 E-value=2.2 Score=44.78 Aligned_cols=275 Identities=9% Similarity=-0.003 Sum_probs=135.8
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
..+.++.|... +. +..+-..++.|...++..+. .. ..+...-.....+++.+.+ -|++-. ..++
T Consensus 56 ~~v~~~~~s~d-~~--~l~s~s~Dg~v~iWd~~~~~--~~-~~~~~~~~~v~~~~~s~~~--~~l~s~--------~~d~ 119 (340)
T 1got_B 56 AKIYAMHWGTD-SR--LLLSASQDGKLIIWDSYTTN--KV-HAIPLRSSWVMTCAYAPSG--NYVACG--------GLDN 119 (340)
T ss_dssp SCEEEEEECTT-SS--EEEEEETTTEEEEEETTTCC--EE-EEEECSSSCEEEEEECTTS--SEEEEE--------ETTC
T ss_pred CceEEEEECCC-CC--EEEEEeCCCcEEEEECCCCC--cc-eEeecCCccEEEEEECCCC--CEEEEE--------eCCC
Confidence 34667777654 33 55666667788777765443 11 2222222234445555433 233211 1245
Q ss_pred CEEEEccCCCccc-cc---cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 329 GIEKAGMHGENRS-PL---VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 329 ~I~~~~~dG~~~~-~l---~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
.|..+++...... .+ ..........+++... ++| ++-...+.|...++........+.. ....
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l-~s~s~d~~i~~wd~~~~~~~~~~~~----h~~~------- 186 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQI-VTSSGDTTCALWDIETGQQTTTFTG----HTGD------- 186 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEE-EEEETTSCEEEEETTTTEEEEEECC----CSSC-------
T ss_pred eEEEEECccCCCcceeEEEecCCCccEEEEEECCC-CcE-EEEECCCcEEEEECCCCcEEEEEcC----CCCc-------
Confidence 6666665432111 11 1112223334555433 343 3444566777777654433222110 0000
Q ss_pred CCccccc-cceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 405 PEDNLWI-GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 405 ~~avdw~-~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
..++.|. .++++++-...+.|.+.++........+.........|+++|...+|.... . .+.|...++........
T Consensus 187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~--d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-D--DATCRLFDLRADQELMT 263 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-T--TSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-C--CCcEEEEECCCCcEEEE
Confidence 0011221 256677777778999999865433333333445678999999866555444 3 45677777654322222
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeE
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSV 561 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i 561 (841)
... .........+++.+.+..|. +-...+.|...++........+..+ -.....|++. ++.++++-...+.|
T Consensus 264 ~~~---~~~~~~v~~~~~s~~g~~l~-~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 264 YSH---DNIICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp ECC---TTCCSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCE
T ss_pred Ecc---CCcccceEEEEECCCCCEEE-EECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCCccE
Confidence 210 01223457788987655555 4445678998887654443333332 1233566664 34444444334444
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.84 E-value=4.5 Score=48.18 Aligned_cols=117 Identities=8% Similarity=-0.068 Sum_probs=66.4
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
...++|+.|.. |.||+...+ ..|.+.+......+.+.... ...-.....|+.| ..++||+... .+.|.+++.
T Consensus 363 ~~v~~i~~d~~-g~lWigt~~---~Gl~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~d-~~g~lWigt~-~~Gl~~~~~ 434 (781)
T 3v9f_A 363 KVVSSVCDDGQ-GKLWIGTDG---GGINVFENGKRVAIYNKENR--ELLSNSVLCSLKD-SEGNLWFGTY-LGNISYYNT 434 (781)
T ss_dssp SCEEEEEECTT-SCEEEEEBS---SCEEEEETTEEEEECC-------CCCSBEEEEEEC-TTSCEEEEET-TEEEEEECS
T ss_pred cceEEEEEcCC-CCEEEEeCC---CcEEEEECCCCeEEEccCCC--CCCCcceEEEEEC-CCCCEEEEec-cCCEEEEcC
Confidence 34678888864 788877543 46888776532222111100 0112345677787 4577776543 457888887
Q ss_pred CCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCc
Q psy14257 524 DGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 524 dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.....+.+..........+.|... ++.||++.. +.|.++++.+++
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKK 480 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSS
T ss_pred CCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCe
Confidence 755444332211112344666665 478888765 578888876554
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=95.84 E-value=2 Score=44.26 Aligned_cols=277 Identities=12% Similarity=0.028 Sum_probs=149.6
Q ss_pred CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 443 l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
.....+|+++|...+|.-+.. .+.|..-++........+. ..-.....+++.+.++.|+.+ ...+.|...+
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~---dg~v~lWd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~-s~d~~i~vwd 83 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLY---SGRVELWNYETQVEVRSIQ-----VTETPVRAGKFIARKNWIIVG-SDDFRIRVFN 83 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEE-ETTSEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCceeEEee-----ccCCcEEEEEEeCCCCEEEEE-CCCCEEEEEE
Confidence 356789999998766665553 3566666665332222222 122334677888766655544 4467899988
Q ss_pred cCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCC
Q psy14257 523 YDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGN 601 (841)
Q Consensus 523 ~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~ 601 (841)
+........+..+ -.....|++. ++.+..+-...+.|...+..++......... |
T Consensus 84 ~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-------h--------------- 139 (304)
T 2ynn_A 84 YNTGEKVVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-------H--------------- 139 (304)
T ss_dssp TTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-------C---------------
T ss_pred CCCCcEEEEEeCC--CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-------c---------------
Confidence 8754433333322 1234677774 3555556556677777776544322211100 0
Q ss_pred CccccccCCCCceeeeCCCCceeecCCCcccccCceeEEe-ecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCC
Q psy14257 602 CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF-SRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAAN 680 (841)
Q Consensus 602 Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 680 (841)
.....|.. ..++ ....|+. +....|+..++...... ..+.......+..++|.+..
T Consensus 140 ---------~~~v~~v~-----~~p~-------~~~~l~sgs~D~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 140 ---------EHFVMCVA-----FNPK-------DPSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLP 196 (304)
T ss_dssp ---------CSCEEEEE-----ECTT-------CTTEEEEEETTSEEEEEETTCSSCS--EEEECCCTTCEEEEEECCST
T ss_pred ---------CCcEEEEE-----ECCC-------CCCEEEEEeCCCeEEEEECCCCCcc--ceeccCCcCcEEEEEEEEcC
Confidence 00011111 0010 0111222 23455666666433221 11112222345677777643
Q ss_pred -CEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCC
Q psy14257 681 -KKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP 759 (841)
Q Consensus 681 -~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~ 759 (841)
+.+..+-...++|+..++.... ....+......+..+++.+.++.|.-. .
T Consensus 197 ~~~~l~s~s~D~~i~iWd~~~~~--------------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~---s 247 (304)
T 2ynn_A 197 DKPYMITASDDLTIKIWDYQTKS--------------------------CVATLEGHMSNVSFAVFHPTLPIIISG---S 247 (304)
T ss_dssp TCCEEEEEETTSEEEEEETTTTE--------------------------EEEEEECCSSCEEEEEECSSSSEEEEE---E
T ss_pred CCCEEEEEcCCCeEEEEeCCCCc--------------------------cceeeCCCCCCEEEEEECCCCCEEEEE---c
Confidence 3344444567889988887544 223344556678889999887655544 3
Q ss_pred CCCeEEEEecCCc-ceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCC
Q psy14257 760 TQSKIVVCNLEGE-YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 811 (841)
Q Consensus 760 ~~~~I~v~~l~g~-~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~ 811 (841)
..++|.+.++... ..+.+... ......++++|..+.+|.+-...+
T Consensus 248 ~Dg~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 248 EDGTLKIWNSSTYKVEKTLNVG-------LERSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp TTSCEEEEETTTCCEEEEECCS-------SSSEEEEEECTTCGGGCEEEEETT
T ss_pred CCCeEEEEECCCCceeeeccCC-------CccEEEEEECCCCCceEEEEecCC
Confidence 5688999998754 34444333 567789999998766555444443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=2.1 Score=46.72 Aligned_cols=270 Identities=9% Similarity=0.005 Sum_probs=128.5
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
+.++.++ +. .+++-..++.|...++..+. ....+...-.....++ +.+ +..+ - ...++.|
T Consensus 136 v~~~~~d---~~--~l~~g~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~--~~~-~~l~-s--------g~~dg~i 195 (435)
T 1p22_A 136 VYCLQYD---DQ--KIVSGLRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQ--YDE-RVII-T--------GSSDSTV 195 (435)
T ss_dssp EEEEECC---SS--EEEEEESSSCEEEEESSSCC---EEEEECCCSSCEEEEE--CCS-SEEE-E--------EETTSCE
T ss_pred EEEEEEC---CC--EEEEEeCCCeEEEEeCCCCe---EEEEEcCCCCcEEEEE--ECC-CEEE-E--------EcCCCeE
Confidence 4455553 22 45555666777777765443 1122222222233333 322 2222 1 1245678
Q ss_pred EEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc
Q psy14257 331 EKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410 (841)
Q Consensus 331 ~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw 410 (841)
..+++............-.....+++ ..+ ++++-...+.|...++............ .+.... ..++.|
T Consensus 196 ~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~-------v~~~~~ 264 (435)
T 1p22_A 196 RVWDVNTGEMLNTLIHHCEAVLHLRF--NNG-MMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAA-------VNVVDF 264 (435)
T ss_dssp EEEESSSCCEEEEECCCCSCEEEEEC--CTT-EEEEEETTSCEEEEECSSSSCCEEEEEE-CCCSSC-------EEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCcEEEEEE--cCC-EEEEeeCCCcEEEEeCCCCCCceeeeEe-cCCCCc-------EEEEEe
Confidence 88887533222222222222334444 344 4444456678888887654432211100 000000 113444
Q ss_pred ccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC
Q psy14257 411 IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 411 ~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
.++..++-...+.|.+.++........+.........++++ ..+|+... . .+.|...++..........
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~--dg~i~iwd~~~~~~~~~~~----- 333 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-S--DNTIRLWDIECGACLRVLE----- 333 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-T--TSCEEEEETTTCCEEEEEC-----
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-C--CCeEEEEECCCCCEEEEEe-----
Confidence 34455555567889999986543333333344456677775 34554444 3 4677777776333222222
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC----------eeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCe
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK----------DHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNS 560 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~----------~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~ 560 (841)
..-.....+++| +..|+.+ ...+.|...++... ....+... ......+++ ++..+++-...+.
T Consensus 334 ~h~~~v~~~~~~--~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~-~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 334 GHEELVRCIRFD--NKRIVSG-AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH---SGRVFRLQF-DEFQIVSSSHDDT 406 (435)
T ss_dssp CCSSCEEEEECC--SSEEEEE-ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC---SSCCCCEEE-CSSCEEECCSSSE
T ss_pred CCcCcEEEEEec--CCEEEEE-eCCCcEEEEECCCCCCccccccchheeeccCC---CCCeEEEEe-CCCEEEEEeCCCE
Confidence 223345566663 4555544 45678888887532 23333222 123456666 4444555556677
Q ss_pred EEEEeccCC
Q psy14257 561 VIRANKWNG 569 (841)
Q Consensus 561 i~~~~~~~g 569 (841)
|...+..++
T Consensus 407 i~iwd~~~~ 415 (435)
T 1p22_A 407 ILIWDFLND 415 (435)
T ss_dssp EEEEC----
T ss_pred EEEEECCCC
Confidence 776665443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=95.72 E-value=2.5 Score=44.42 Aligned_cols=249 Identities=8% Similarity=-0.041 Sum_probs=130.5
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
.....++++|...+|+.... .+.|...+++......+.... ..-.....+++.+.+..|+.+. ..+.|...++
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~ 81 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPN---NHEVHIYEKSGNKWVQVHELK---EHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTL 81 (372)
T ss_dssp SCCCEEEECTTSSEEEEECS---SSEEEEEEEETTEEEEEEEEE---CCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeC---CCEEEEEeCCCCcEEeeeeec---CCCCcccEEEEeCCCCEEEEEc-CCCeEEEEEC
Confidence 45678999988666665533 467777777665421222110 2334568899998666666555 4578888888
Q ss_pred CCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCC
Q psy14257 524 DGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNC 602 (841)
Q Consensus 524 dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~C 602 (841)
..............-.....+++. ++.++++-...+.|...+...+........... + |
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-~---~---------------- 141 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK-P---I---------------- 141 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT-T---C----------------
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec-c---c----------------
Confidence 766433322211112345677774 344444434456666555544443222111000 0 0
Q ss_pred ccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEEEecCCCC--------------ccccceeec-C
Q psy14257 603 SHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRGVDLEHPY--------------YHTIPTISI-P 666 (841)
Q Consensus 603 s~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~~~l~~~~--------------~~~~~~~~~-~ 666 (841)
.....+.. +.++ ..+|+.+ ....|+..++.... ........+ .
T Consensus 142 --------~~~i~~~~-----~~~~--------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
T 1k8k_C 142 --------RSTVLSLD-----WHPN--------SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200 (372)
T ss_dssp --------CSCEEEEE-----ECTT--------SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred --------CCCeeEEE-----EcCC--------CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence 00011110 0111 1223332 23445555542110 000011111 1
Q ss_pred CCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEe
Q psy14257 667 QVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAID 746 (841)
Q Consensus 667 ~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD 746 (841)
....+.+++|++..+.|+... ..+.|+..++.... ....+......+..|++.
T Consensus 201 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--------------------------~~~~~~~~~~~v~~~~~~ 253 (372)
T 1k8k_C 201 SCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM--------------------------AVATLASETLPLLAVTFI 253 (372)
T ss_dssp CSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT--------------------------EEEEEECSSCCEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc--------------------------eeEEEccCCCCeEEEEEe
Confidence 224578999999888887776 67889999886554 222333444567889999
Q ss_pred ecCCcEEEEecCCCCCeEEEEecCC
Q psy14257 747 WIAQNMFIAVSSPTQSKIVVCNLEG 771 (841)
Q Consensus 747 ~~~~~LYw~~~~~~~~~I~v~~l~g 771 (841)
+.++.|... ..+.|.+.++..
T Consensus 254 ~~~~~l~~~----~d~~i~i~~~~~ 274 (372)
T 1k8k_C 254 TESSLVAAG----HDCFPVLFTYDS 274 (372)
T ss_dssp ETTEEEEEE----TTSSCEEEEEET
T ss_pred cCCCEEEEE----eCCeEEEEEccC
Confidence 877644433 457788888765
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0069 Score=57.24 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=41.7
Q ss_pred CCceecCCCCccccccccCC--CCCccCceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 158 RDMYLQPDLITCSYLHPCEA--WGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 158 ~Gy~l~~d~~~C~~~~eC~~--~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
.||.+. ..|.+++||.. ...|++.|.++ .++|.|.|.+||.|..++++|.+
T Consensus 106 ~GF~~~---y~~~d~~eC~~~~~~~C~~~C~n~--~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 106 TGFAAY---YVATDINECTDFVDVPCSHFCNNF--IGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp CEEEEE---EEEEECCTTTC-CCCCSSSEEEEE--TTEEEEECCTTCEECTTSSCEEC
T ss_pred ccceee---eecccCcccCCCCCCCCCCcccCc--CCCEEEecCCCcEECCCCCcccc
Confidence 566542 34678889974 35799999999 99999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=95.62 E-value=1.9 Score=47.12 Aligned_cols=201 Identities=14% Similarity=0.070 Sum_probs=111.6
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEe-CCCCCccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQ-TGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~-~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
..+.+|+|.+.... +..+-..++.|...++..+. ....+.. ..-.....|++.|..++.++ + ...+
T Consensus 120 ~~V~~l~~~P~~~~--~lasGs~dg~i~lWd~~~~~--~~~~~~~~gH~~~V~~l~f~p~~~~~l~--s-------~s~D 186 (435)
T 4e54_B 120 RRATSLAWHPTHPS--TVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNTNQFY--A-------SSME 186 (435)
T ss_dssp SCEEEEEECSSCTT--CEEEEETTSCEEEECSSCCS--CCEEECCCSSSCCCCEEEECSSCTTEEE--E-------ECSS
T ss_pred CCEEEEEEeCCCCC--EEEEEeCCCEEEEEECCCCC--ceeEEEccCCCCCEEEEEEeCCCCCEEE--E-------EeCC
Confidence 34678889876555 66676778888888776543 2222211 11234566777654333332 1 2346
Q ss_pred CCEEEEccCCCcccccccc--CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 328 GGIEKAGMHGENRSPLVTK--NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~--~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
+.|..+++.+.....+... ...+...+++++.+..|+. -...+.|...+++|.....+.. ....+ ..
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~dg~i~~wd~~~~~~~~~~~-----h~~~v-----~~ 255 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT-GDNVGNVILLNMDGKELWNLRM-----HKKKV-----TH 255 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEE-ECSSSBEEEEESSSCBCCCSBC-----CSSCE-----EE
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEE-EeCCCcEeeeccCcceeEEEec-----ccceE-----Ee
Confidence 7888888887655554432 2234567888887665554 4567889888888764332210 00000 00
Q ss_pred CccccccceEEEEecCCCcEEEEccCCc-eEEEEec--CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC
Q psy14257 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQ-FRRTLIA--GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~~~~I~v~~~~G~-~~~~l~~--~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld 476 (841)
+++...+..++.+-...+.|.+.++... ....+.. ........|+++|...+|+.+.. .+.|...++.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~---D~~i~iwd~~ 326 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ---KSEIRVYSAS 326 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES---SSCEEEEESS
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC---CCEEEEEECC
Confidence 1122233556767666778888776532 1111111 12234578899987666665543 3556555554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=95.60 E-value=2.6 Score=43.81 Aligned_cols=204 Identities=9% Similarity=0.085 Sum_probs=108.7
Q ss_pred CceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeee-cCCCccccCCCCCCccccc-cceEEEEecCCCcEEEE
Q psy14257 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL-GSDSRVGIPNCRPEDNLWI-GKNLYWVESNLDQIEVA 428 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~-~~~~~~~i~~~~~~avdw~-~~~LY~tD~~~~~I~v~ 428 (841)
...|++.+.+..++++-...++|...++.+...+.-.....+ +....+ .++.|. .+.+.++-...+.|.+.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-------QDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCE-------EEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccE-------EEEEECCCCCEEEEEeCCCEEEEE
Confidence 345666665555666666777777777654433211111111 000000 011111 14555666667889999
Q ss_pred ccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEecc----
Q psy14257 429 KLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQ---- 504 (841)
Q Consensus 429 ~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~---- 504 (841)
++........+.........++++|...+|+-... ...|..-++.+.....+. ..-.....+++.+.
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~vwd~~~~~~~~~~------~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR---DKTIKVWTIKGQCLATLL------GHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET---TSCEEEEETTSCEEEEEC------CCSSCEEEEEECCC----
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEe------ccCCcEEEEEEccCCCCC
Confidence 98654333333334456789999987555554443 356666667665433332 12233455666542
Q ss_pred -CCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 505 -LTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 505 -~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
.+.++++-...+.|...++........+..+ -.....+++. ++.++++-...+.|...+..+++..
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 2234445555678888888765444333332 2234567774 4556666556677777776555433
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=95.53 E-value=2.8 Score=43.62 Aligned_cols=287 Identities=10% Similarity=0.010 Sum_probs=145.7
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCccc--ceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLS--NIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~--~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
+.++.|...... +..+-...+.|...++.+.... .....+...-.....+++.+.+ -|++- ...++
T Consensus 20 V~~l~~~~~~~~--~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~s--------~s~D~ 87 (319)
T 3frx_A 20 VTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--AYALS--------ASWDK 87 (319)
T ss_dssp EEEEEECSSCTT--EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS--SEEEE--------EETTS
T ss_pred EEEEEccCCCcc--EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC--CEEEE--------EeCCC
Confidence 456666554334 6666666777766655432100 0111222222234445555433 22221 12356
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcc
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~av 408 (841)
.|..+++............-.....+++++.+..| ++-...+.|...++.+.....+.... .....+... |..-
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~D~~i~vwd~~~~~~~~~~~h~----~~v~~~~~~-~~~~ 161 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQCLATLLGHN----DWVSQVRVV-PNEK 161 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEE-EEEETTSCEEEEETTSCEEEEECCCS----SCEEEEEEC-CC--
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeccC----CcEEEEEEc-cCCC
Confidence 78888765332222222233445678887765554 44456678888888775444332100 000000000 0000
Q ss_pred ccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 409 LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 409 dw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
....+.++++-...+.|.+.++........+.........++++|...+|.-... .+.|..-++..........
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~--- 235 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGEIMLWNLAAKKAMYTLS--- 235 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEE---
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEec---
Confidence 0001345666667788999988765544434444456789999997655554443 4677777775443322222
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC------CCCcceEEEEe-cCeEEEEeCCCCeE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD------SLTHPFAIALF-ENHVYWTDWRTNSV 561 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~------~l~~P~gla~~-~~~lY~td~~~~~i 561 (841)
.-.....+++.+.+..|..+.. +.|..++++............ .-.....+++. ++...++-...+.|
T Consensus 236 ---~~~~v~~~~~sp~~~~la~~~~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 236 ---AQDEVFSLAFSPNRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp ---CCSCEEEEEECSSSSEEEEEET--TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---CCCcEEEEEEcCCCCEEEEEcC--CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceE
Confidence 2235678999987777666553 457777777654332222110 01123466663 45555555555666
Q ss_pred EEEec
Q psy14257 562 IRANK 566 (841)
Q Consensus 562 ~~~~~ 566 (841)
...+.
T Consensus 311 ~vWd~ 315 (319)
T 3frx_A 311 RVWQV 315 (319)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.012 Score=64.92 Aligned_cols=93 Identities=20% Similarity=0.574 Sum_probs=57.4
Q ss_pred ccCCCCCeEecCCCCCCCCCCCCCCCCCccccc-ccc------------cCCCCCC--CcccCCCCcEEecCCCceecCC
Q psy14257 101 DCQDVLRTCIPKALVCDGEPACFNGEDEMFCDE-KQC------------LRSDCHH--DCYNTPEGFMCVCPRDMYLQPD 165 (841)
Q Consensus 101 ~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C~e-C~~------------~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d 165 (841)
.|.++ +.|.+..+.| .|++|+.+..|.. |.. .++.|.+ .| .++++.|.|++||.
T Consensus 204 ~C~~~-G~C~~~~g~C----~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C--~~~~~~C~C~~G~~---- 272 (423)
T 2gy5_A 204 ACMNN-GVCHEDTGEC----ICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC--LPDPYGCSCATGWK---- 272 (423)
T ss_dssp CCCTT-CEECTTTCCE----ECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEE--ETTTTEEECCBTCB----
T ss_pred CCCCC-CEEECCCCcE----eCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEE--CCCCCeEEeCCCcc----
Confidence 58887 8998878888 8999998777732 321 0123322 23 36789999999997
Q ss_pred CCccccc-------cccCCCCCccC--ceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 166 LITCSYL-------HPCEAWGTCSQ--DCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 166 ~~~C~~~-------~eC~~~~~Cs~--~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
|..|+.. ..|+..-.|.. .|.+. +.|.|.+||. +..|..
T Consensus 273 G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~-----~~C~C~~G~~----G~~Ce~ 320 (423)
T 2gy5_A 273 GLQCNEACHPGFYGPDCKLRCSCNNGEMCDRF-----QGCLCSPGWQ----GLQCER 320 (423)
T ss_dssp SGGGCBCCCTTBCSBTTCCBCCCTTCCEEETT-----TEEECCTTCB----STTSCB
T ss_pred cccccCccCCCCcCCcccccccCCCCCEecCC-----CceECCCCCc----CCCCcc
Confidence 5566541 12211112322 45543 2499999997 456654
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.007 Score=63.23 Aligned_cols=41 Identities=34% Similarity=0.843 Sum_probs=36.0
Q ss_pred cCCCCCC-CCCCccccccCCCCceeeeCCCCceeecCCCcccc
Q psy14257 592 KSPCEMN-NGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633 (841)
Q Consensus 592 ~n~C~~~-ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~ 633 (841)
.|.|..+ ||+|+|+|.... ++|+|.|+.||.|..|+++|..
T Consensus 2 ~~eC~~~~~~~C~~~C~~~~-~~~~C~C~~G~~l~~d~~sC~p 43 (283)
T 3f1s_B 2 KNECHPERTDGCQHFCLPGQ-ESYTCSCAQGYRLGEDHKQCVP 43 (283)
T ss_dssp -CCCCSSCSSSCSSBCCCCT-TSCCCBCCTTEEECTTSSCEEE
T ss_pred CCccCCCCCCCCCCEeeCCC-CCeEecCCCCcccCCCCCcccc
Confidence 5789998 999999999765 5699999999999999999983
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=3.1 Score=45.17 Aligned_cols=148 Identities=12% Similarity=0.043 Sum_probs=82.7
Q ss_pred ceEEEEecCCCcEEEEccC-Cce-EEEE------ecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc----
Q psy14257 413 KNLYWVESNLDQIEVAKLS-GQF-RRTL------IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR---- 480 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~-G~~-~~~l------~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~---- 480 (841)
++++.+- ..+.|.+.++. +.. ..++ +.........++++|....++.+-.. .+.|...++.....
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS--KGTIRLCDMRASALCDRH 265 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET--TSCEEEEETTTCSSSCTT
T ss_pred CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC--CCeEEEEECcCCccccce
Confidence 4444454 57788888887 322 2222 22233457899999986244444333 46677777654332
Q ss_pred -EEEEEecccCCCC------------CCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCeeEEEEcCCCCCC------
Q psy14257 481 -SVIVRVDLLTSRG------------AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKDHHVVLSNHDSLT------ 539 (841)
Q Consensus 481 -~~i~~~~~~~~~~------------~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~~~~i~~~~~~l~------ 539 (841)
..+.. .. .....+++.+.+..|..+.. +.|...++. +....++... ..+.
T Consensus 266 ~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~-~~~~~~l~~~ 336 (447)
T 3dw8_B 266 SKLFEE------PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVH-EYLRSKLCSL 336 (447)
T ss_dssp CEEECC------C-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESC-GGGTTTHHHH
T ss_pred eeEecc------CCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeecc-cccccccccc
Confidence 33321 11 15678999986666665544 889999886 3333333322 1111
Q ss_pred -------cceEEEEe-cCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 540 -------HPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 540 -------~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
..+.+++. ++...++-...+.|...+..+++..
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 02236663 3444466666778888887666544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=95.41 E-value=4 Score=44.70 Aligned_cols=276 Identities=11% Similarity=-0.017 Sum_probs=137.6
Q ss_pred eEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccc
Q psy14257 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLV 344 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~ 344 (841)
+..+-...+.|...++..+. ....+...-.....+++.+ +. +++- ...++.|..+++.........
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~--~~-~l~s--------~s~dg~i~vwd~~~~~~~~~~ 199 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAH--GG-ILVS--------GSTDRTVRVWDIKKGCCTHVF 199 (464)
T ss_dssp EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECS--TT-EEEE--------EETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcC--CC-EEEE--------EeCCCCEEEEECCCCcEEEEE
Confidence 44555566777777665442 1122222222344445432 22 3322 124568888887643332223
Q ss_pred ccCcCCCceEEEEc-cCCEEEEEeCCCCeEEEEEecCCccEEEEeee-----eecCCC----ccccC---CCCCCccccc
Q psy14257 345 TKNIQWPSSLVIDY-NQDILYWCDSHLNTVESVRVDGSERTVSFNLE-----VLGSDS----RVGIP---NCRPEDNLWI 411 (841)
Q Consensus 345 ~~~~~~P~glavD~-~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~-----~~~~~~----~~~i~---~~~~~avdw~ 411 (841)
...-.....+++.+ ..+.++++-...+.|...++............ ....+. .+... .....++.+.
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 279 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC
Confidence 33334455677775 34566666667788888887654432111000 000000 00000 0000112222
Q ss_pred cceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 412 GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
+++.++-...+.|.+.++........+.........++++|...+|+.... .+.|...++.......... .
T Consensus 280 -~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~-----~ 350 (464)
T 3v7d_B 280 -GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM---DTTIRIWDLENGELMYTLQ-----G 350 (464)
T ss_dssp -TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET---TSCEEEEETTTTEEEEEEC-----C
T ss_pred -CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEEe-----C
Confidence 344455556688999998655443334444466789999998777665553 4677777775332222222 2
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEEEEeccCCc
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.-.....++++ ++.|+.+ ...+.|...++............ .....+++ .++.+.++-. .+.|...+..+|+
T Consensus 351 h~~~v~~~~~~--~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSA-AADGSIRGWDANDYSRKFSYHHT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEE-ETTSEEEEEETTTCCEEEEEECT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred CCCcEEEEEEc--CCEEEEE-eCCCcEEEEECCCCceeeeecCC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 33345667775 4455544 44678999998765544333321 11223343 2334433333 5677777766554
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.29 E-value=3.7 Score=43.59 Aligned_cols=208 Identities=11% Similarity=0.060 Sum_probs=113.9
Q ss_pred CCCCceeEEEcCCC-CeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEE
Q psy14257 442 DMESPRAIALDPRF-GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520 (841)
Q Consensus 442 ~l~~P~giavd~~~-g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~ 520 (841)
.......|+++|.+ .+|+.... .+.|...+++.......... ...-.....+++.+.+++++++-...+.|..
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSK---GGDIILWDYDVQNKTSFIQG---MGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEB---TSCEEEEETTSTTCEEEECC---CSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred CCCCEEEEEECCCCCCEEEEEcC---CCeEEEEeCCCcccceeeec---CCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 34567889999986 45555543 46777778775555444331 0133456788898745555555556789999
Q ss_pred EEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCC
Q psy14257 521 VTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNN 599 (841)
Q Consensus 521 ~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~n 599 (841)
.++.+.....+......-.....+++. ++.++++-...+.|...+. .++....+....
T Consensus 146 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~-------------------- 204 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK-------------------- 204 (383)
T ss_dssp EETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS--------------------
T ss_pred EECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC--------------------
Confidence 999987776665433212234667764 3444455455567776665 333332222110
Q ss_pred CCCccccccCCCCceeeeCCCCceeecCCCcccccCce-eEEe-ecCCeEEEEecCCCCccccceeecCCCCCceEEEEe
Q psy14257 600 GNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQ-FIIF-SRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFD 677 (841)
Q Consensus 600 g~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~-~l~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d 677 (841)
+...+. ...+ ..+ +|+. +....|+..++..................+..++|+
T Consensus 205 ------------~~v~~~-----~~~~--------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 259 (383)
T 3ei3_B 205 ------------AKVTHA-----EFNP--------RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFN 259 (383)
T ss_dssp ------------SCEEEE-----EECS--------SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEEC
T ss_pred ------------CcEEEE-----EECC--------CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEc
Confidence 000110 0011 111 2333 234456666665422111111112233567899999
Q ss_pred c-CCCEEEEEECCCCeEEEEEcccCc
Q psy14257 678 A-ANKKIYWTDQEYNEVKRSSIVGGQ 702 (841)
Q Consensus 678 ~-~~~~iyw~d~~~~~I~~~~~~g~~ 702 (841)
+ ..+.|+... ..+.|+..++....
T Consensus 260 ~~~~~~l~~~~-~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 260 PTDSTKLLTTD-QRNEIRVYSSYDWS 284 (383)
T ss_dssp TTTSCEEEEEE-SSSEEEEEETTBTT
T ss_pred CCCCCEEEEEc-CCCcEEEEECCCCc
Confidence 9 666666555 67899999887544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=95.22 E-value=5.9 Score=45.52 Aligned_cols=285 Identities=9% Similarity=-0.013 Sum_probs=136.4
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
+.+|+|.+..+. |.... .+.|...++..+. . ...+...-.....+++.|.+ -|+.- ...++.|
T Consensus 21 ~~~~~~spdg~~--l~~~~--~~~v~l~~~~~~~--~-~~~~~~h~~~v~~~~~spdg--~~las--------g~~d~~v 83 (611)
T 1nr0_A 21 AVVLGNTPAGDK--IQYCN--GTSVYTVPVGSLT--D-TEIYTEHSHQTTVAKTSPSG--YYCAS--------GDVHGNV 83 (611)
T ss_dssp CCCCEECTTSSE--EEEEE--TTEEEEEETTCSS--C-CEEECCCSSCEEEEEECTTS--SEEEE--------EETTSEE
T ss_pred eeEEeeCCCCCE--EEeCC--CCEEEEecCCCcc--c-CeEecCCCCceEEEEECCCC--cEEEE--------EeCCCCE
Confidence 456666654322 44332 3456555554332 1 22222222334556666544 22221 1235677
Q ss_pred EEEccC-CCcccc-ccccCcCCCceEEEEccCCEEEEEeCCC---CeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 331 EKAGMH-GENRSP-LVTKNIQWPSSLVIDYNQDILYWCDSHL---NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 331 ~~~~~d-G~~~~~-l~~~~~~~P~glavD~~~~~lYwaD~~~---~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
..+++. ++.... .....-..-..|++++++++|..+.... +.|+..+. |.....+. +... ..
T Consensus 84 ~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~-----gh~~-------~v 150 (611)
T 1nr0_A 84 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNLT-----GQAR-------AM 150 (611)
T ss_dssp EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCCC-----CCSS-------CE
T ss_pred EEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCcceec-----CCCC-------Cc
Confidence 777764 222111 1111223456899999888887776543 23444331 21111100 0000 00
Q ss_pred Ccccc--ccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEE
Q psy14257 406 EDNLW--IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSV 482 (841)
Q Consensus 406 ~avdw--~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~ 482 (841)
.+++| .+..+..+-...+.|.+.+.........+.........++++|...+ +.+-.. .+.|..-++. |.....
T Consensus 151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~-las~s~--D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGG--DGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE-EEEEET--TSCEEEEETTTCCEEEE
T ss_pred eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE-EEEEEC--CCcEEEEECCCCcEeee
Confidence 01222 12335666666778888886544333334444566789999997544 444433 3556555543 332222
Q ss_pred EEEeccc-CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC-eeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCe
Q psy14257 483 IVRVDLL-TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK-DHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNS 560 (841)
Q Consensus 483 i~~~~~~-~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~-~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~ 560 (841)
+...... ...-....++++.+.+..|. +-...+.|...++... ...++...........++.. .+..+++-...+.
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~-s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGF 305 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-CSSCEEEEETTCC
T ss_pred eccccccccccCCCEEEEEECCCCCEEE-EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE-cCCEEEEEeCCCc
Confidence 2110000 01223567899987665555 4445678888888744 33333322111122334444 4444445455566
Q ss_pred EEEEeccCCc
Q psy14257 561 VIRANKWNGS 570 (841)
Q Consensus 561 i~~~~~~~g~ 570 (841)
|...+..++.
T Consensus 306 i~~~~~~~~~ 315 (611)
T 1nr0_A 306 INFVNPELGS 315 (611)
T ss_dssp EEEEETTTTE
T ss_pred EEEEeCCCCC
Confidence 6666655444
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=95.15 E-value=3.5 Score=42.57 Aligned_cols=289 Identities=11% Similarity=-0.019 Sum_probs=139.6
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccc--eEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSN--IDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~--~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
.+.+|+|.+..+. +..+-..++.|..-++..+.... ....+...-.....+++.+.+ -|++-. ..+
T Consensus 40 ~V~~v~~sp~~~~--~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--~~l~s~--------~~d 107 (340)
T 4aow_A 40 WVTQIATTPQFPD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--QFALSG--------SWD 107 (340)
T ss_dssp CEEEEEECTTCTT--EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--SEEEEE--------ETT
T ss_pred CEEEEEEeCCCCC--EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--CEEEEE--------ccc
Confidence 4668888775455 66776777888877765432111 111222222344556665543 222211 123
Q ss_pred CCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 328 GGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
+.|...+...................+.+.+.+..|+.+ ...+.+...++.+.......... ....+. ..+
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~~~~~d~~~~~~~~~~~~~---~~~~v~-----~~~ 178 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG-SRDKTIKLWNTLGVCKYTVQDES---HSEWVS-----CVR 178 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSCEEEECTTSCEEEEECSSS---CSSCEE-----EEE
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceee-cCCCeEEEEEeCCCceEEEEecc---ccCccc-----ceE
Confidence 455555555443333333333334444444444444333 33444555554443322211000 000000 001
Q ss_pred ccccc-ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 408 NLWIG-KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 408 vdw~~-~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
+.... ..++++-...+.|.+.++........+.........|+++|...+|+.... .+.|...++..........
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~- 254 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK---DGQAMLWDLNEGKHLYTLD- 254 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEE-
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEeccCceeeeec-
Confidence 11111 345566666678888888765544444444456789999997665554443 4677777765443332222
Q ss_pred cccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC-------CCCCcceEEEEe-cCeEEEEeCCC
Q psy14257 487 DLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH-------DSLTHPFAIALF-ENHVYWTDWRT 558 (841)
Q Consensus 487 ~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~-------~~l~~P~gla~~-~~~lY~td~~~ 558 (841)
.-.....+++.+. +.+..+ ...+.|...++++.......... .....-..|++. ++.++++-...
T Consensus 255 -----~~~~v~~~~~~~~-~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 327 (340)
T 4aow_A 255 -----GGDIINALCFSPN-RYWLCA-ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327 (340)
T ss_dssp -----CSSCEEEEEECSS-SSEEEE-EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred -----CCceEEeeecCCC-Cceeec-cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 2234566777643 333333 23577888888775443322211 001122456663 34555555556
Q ss_pred CeEEEEeccCCc
Q psy14257 559 NSVIRANKWNGS 570 (841)
Q Consensus 559 ~~i~~~~~~~g~ 570 (841)
+.|+..+..+|+
T Consensus 328 g~v~iW~~~tGt 339 (340)
T 4aow_A 328 NLVRVWQVTIGT 339 (340)
T ss_dssp SCEEEEEEEC--
T ss_pred CEEEEEeCCCcC
Confidence 777766666664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.12 E-value=3.5 Score=48.92 Aligned_cols=218 Identities=8% Similarity=0.042 Sum_probs=120.4
Q ss_pred CCEEEEcc---CCC--ccccccccC-------cCCCceEEEE-ccCCEEEEEeCCC----CeEEEEEecCC-ccEEEEee
Q psy14257 328 GGIEKAGM---HGE--NRSPLVTKN-------IQWPSSLVID-YNQDILYWCDSHL----NTVESVRVDGS-ERTVSFNL 389 (841)
Q Consensus 328 ~~I~~~~~---dG~--~~~~l~~~~-------~~~P~glavD-~~~~~lYwaD~~~----~~I~~~~ldG~-~~~~~~~~ 389 (841)
..+.|... +|. ..+++...+ ...-.+.++. +++++|.|+.... .+|+.++++++ .... ..+
T Consensus 141 ~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~ 219 (751)
T 2xe4_A 141 KIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKV 219 (751)
T ss_dssp CEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCE
T ss_pred eEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccc
Confidence 35777766 554 444444321 1134567888 8888777765433 25999999887 4210 000
Q ss_pred eeecCCCccccCCCCCCcccc--ccceEEEEecC----CCcEEEEccCCce--EEEEec-CCCCCceeEEEcCCCCeEEE
Q psy14257 390 EVLGSDSRVGIPNCRPEDNLW--IGKNLYWVESN----LDQIEVAKLSGQF--RRTLIA-GDMESPRAIALDPRFGLLFW 460 (841)
Q Consensus 390 ~~~~~~~~~~i~~~~~~avdw--~~~~LY~tD~~----~~~I~v~~~~G~~--~~~l~~-~~l~~P~giavd~~~g~Ly~ 460 (841)
.... ..+.| .++.||++... ..+|++.++.+.. .+.+.. ..-..-.++++.|++.+|++
T Consensus 220 ~~~~------------~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~ 287 (751)
T 2xe4_A 220 SGTN------------GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI 287 (751)
T ss_dssp EEEC------------SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE
T ss_pred cCce------------eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE
Confidence 0000 12334 23567776532 1478888887643 222322 11122356789999889999
Q ss_pred EecCCCCCeEEEecCCCCC--c--EEEEEecccCCCCCCceeEEEe-ccCCEEEEEeC----CCCeEEEEEcCC-CeeEE
Q psy14257 461 TDWDSKAPRIERCSMSGEH--R--SVIVRVDLLTSRGAWPNGLTLD-YQLTRIYWIDA----KSDSIHTVTYDG-KDHHV 530 (841)
Q Consensus 461 td~~~~~~~I~r~~ldG~~--~--~~i~~~~~~~~~~~~P~glalD-~~~~~LYw~d~----~~~~I~~~~~dG-~~~~~ 530 (841)
+.+......|+.+++++.. . +.+.. ....+ -..+| ..+++||+... .+.+|+++++++ ...+.
T Consensus 288 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------~~~~~-~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~ 360 (751)
T 2xe4_A 288 GSQSPETAEVHLLDLRKGNAHNTLEIVRP------REKGV-RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSH 360 (751)
T ss_dssp EEECSSCEEEEEEESSSCTTCCCEEESSC------CCTTC-CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCC
T ss_pred EecCCCCceEEEEECCCCCCCceeEEeec------CCCCc-eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccccee
Confidence 8765446789999997642 2 23322 11112 12344 34788887643 345899999884 33333
Q ss_pred -EEcCCCCCCcceEEEEecCeEEEEeCCCC--eEEEEec
Q psy14257 531 -VLSNHDSLTHPFAIALFENHVYWTDWRTN--SVIRANK 566 (841)
Q Consensus 531 -i~~~~~~l~~P~gla~~~~~lY~td~~~~--~i~~~~~ 566 (841)
++..... ....++++++++||++-...+ .|..++.
T Consensus 361 ~li~~~~~-~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 361 VLVDHSED-VFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEECCCSS-EEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred eEECCCCC-cEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 4332211 123456777888888765433 4555553
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=95.09 E-value=3.6 Score=42.29 Aligned_cols=273 Identities=10% Similarity=-0.003 Sum_probs=142.8
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
.......++++|...+|+.... .+.|...++.......... ..-.....+++.+.+..|+.+. ..+.|...
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vw 92 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVSAS-DDKTLKIW 92 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEE-TTSEEEEE
T ss_pred cCCcEEEEEECCCCCEEEEeeC---CCeEEEEeCCCcccchhhc-----cCCCceEEEEEcCCCCEEEEEC-CCCEEEEE
Confidence 3455688999997666655543 3456555554333222222 2334467899987666665544 46788888
Q ss_pred EcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCC
Q psy14257 522 TYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNG 600 (841)
Q Consensus 522 ~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng 600 (841)
++........+..+ -.....+++. ++.++++-...+.|...+..+++....+.... .
T Consensus 93 d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------------~ 150 (312)
T 4ery_A 93 DVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--------------------D 150 (312)
T ss_dssp ETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS--------------------S
T ss_pred ECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC--------------------C
Confidence 88754433333322 1233556663 34455555556677777765554333222100 0
Q ss_pred CCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEEEecCCCCccccceeecCCCCCceEEEEecC
Q psy14257 601 NCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAA 679 (841)
Q Consensus 601 ~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~ 679 (841)
.... ....|++ .+|+.+ ....|+..++..... ...+.......+..++|+|.
T Consensus 151 ~v~~----------~~~~~~~---------------~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 151 PVSA----------VHFNRDG---------------SLIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPN 203 (312)
T ss_dssp CEEE----------EEECTTS---------------SEEEEEETTSCEEEEETTTCCE--EEEECCSSCCCEEEEEECTT
T ss_pred cEEE----------EEEcCCC---------------CEEEEEeCCCcEEEEECCCCce--eeEEeccCCCceEEEEECCC
Confidence 0000 0111111 122222 334455555543221 11111122234567899998
Q ss_pred CCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcce--eEEeecCCcEEEEec
Q psy14257 680 NKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSG--LAIDWIAQNMFIAVS 757 (841)
Q Consensus 680 ~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~g--lAvD~~~~~LYw~~~ 757 (841)
.+.|+... ..+.|+..++.... .............. .++....+.++.+
T Consensus 204 ~~~l~~~~-~d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-- 254 (312)
T 4ery_A 204 GKYILAAT-LDNTLKLWDYSKGK--------------------------CLKTYTGHKNEKYCIFANFSVTGGKWIVS-- 254 (312)
T ss_dssp SSEEEEEE-TTTEEEEEETTTTE--------------------------EEEEECSSCCSSSCCCEEEECSSSCEEEE--
T ss_pred CCEEEEEc-CCCeEEEEECCCCc--------------------------EEEEEEecCCceEEEEEEEEeCCCcEEEE--
Confidence 88887766 57888888876544 11112111112222 2333344566666
Q ss_pred CCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEe
Q psy14257 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSN 807 (841)
Q Consensus 758 ~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d 807 (841)
....+.|.+.++........+.+. -.....++.+|....|.-+-
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKLQGH------TDVVISTACHPTENIIASAA 298 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEECCC------SSCEEEEEECSSSSEEEEEE
T ss_pred ECCCCEEEEEECCCchhhhhhhcc------CCcEEEEeecCcCCceEEEE
Confidence 456788999999765443333320 35678899999866666554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.03 E-value=4.3 Score=42.93 Aligned_cols=150 Identities=9% Similarity=0.066 Sum_probs=83.4
Q ss_pred EEEecCCCcEEEEccCC-ceEEEEecCCCCCceeEEEcCC-CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCC
Q psy14257 416 YWVESNLDQIEVAKLSG-QFRRTLIAGDMESPRAIALDPR-FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRG 493 (841)
Q Consensus 416 Y~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~-~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~ 493 (841)
.++-...+.|.+.++.. +...++ .........+++.|. .|.++++-.. .+.|...++.......... ..-
T Consensus 169 l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~--Dg~v~~wd~~~~~~~~~~~-----~h~ 240 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGC--DKKAMVWDMRSGQCVQAFE-----THE 240 (354)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEET--TSCEEEEETTTCCEEEEEC-----CCS
T ss_pred EEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeC--CCeEEEEECCCCcEEEEec-----CCC
Confidence 33444556777777653 333333 233345567788775 3445555433 4677777775433222222 233
Q ss_pred CCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 494 AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
...+.+++.+.+..|+ +-...+.|...++.......+............+++. ++.+..+-...+.|...+..+++..
T Consensus 241 ~~v~~v~~~p~~~~l~-s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFA-SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp SCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CCeEEEEEeCCCCEEE-EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence 4567899987655554 4445678999998765444444332212233456663 4555556556677777776666544
Q ss_pred EE
Q psy14257 573 TL 574 (841)
Q Consensus 573 ~~ 574 (841)
..
T Consensus 320 ~~ 321 (354)
T 2pbi_B 320 SI 321 (354)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.4 Score=52.78 Aligned_cols=206 Identities=8% Similarity=-0.035 Sum_probs=117.6
Q ss_pred CceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc--ccceEEEEecCCCcEEEE
Q psy14257 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW--IGKNLYWVESNLDQIEVA 428 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw--~~~~LY~tD~~~~~I~v~ 428 (841)
-..|++.+..+.+..+-...+.|...+++......+.... +.... ..++.| .+++++++-+..+.|.+.
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~--gH~~~-------V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI--GAGGS-------ITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC--SSSCC-------CCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc--CCCCC-------EEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 3567777766666666667778888887755544332211 01000 123444 346677777778899999
Q ss_pred ccCCceEEEEecCCC--CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCC
Q psy14257 429 KLSGQFRRTLIAGDM--ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLT 506 (841)
Q Consensus 429 ~~~G~~~~~l~~~~l--~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~ 506 (841)
++.+...+++..... .....+++++...+|+.... .+.|...+++|.....+. ..-.....+++.+.+.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~i~~wd~~~~~~~~~~------~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN---VGNVILLNMDGKELWNLR------MHKKKVTHVALNPCCD 263 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS---SSBEEEEESSSCBCCCSB------CCSSCEEEEEECTTCS
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC---CCcEeeeccCcceeEEEe------cccceEEeeeecCCCc
Confidence 999887766654332 23467899987666554442 467888888775433221 1233457888987777
Q ss_pred EEEEEeCCCCeEEEEEcCCCe-eEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 507 RIYWIDAKSDSIHTVTYDGKD-HHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 507 ~LYw~d~~~~~I~~~~~dG~~-~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
.++.+-...+.|...++.... ...+......-.....|++. ++...++-...+.|...+..++.....
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~ 333 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence 777666556777777765422 11111111001112344442 344455555567777777666554443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=94.95 E-value=3.9 Score=41.99 Aligned_cols=273 Identities=12% Similarity=0.015 Sum_probs=142.4
Q ss_pred ceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
+++..+-...+.|.+.++. ++.... +.........|+++|...+|+.... .+.|...++........+. .
T Consensus 35 ~~~l~s~~~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~-----~ 105 (312)
T 4ery_A 35 GEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLK-----G 105 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEE-----C
T ss_pred CCEEEEeeCCCeEEEEeCCCcccchh-hccCCCceEEEEEcCCCCEEEEECC---CCEEEEEECCCCcEEEEEc-----C
Confidence 3444444556777777764 444443 3344456789999998666665553 4677777775433333333 2
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCc
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.-.....+++.+.+..|+... ..+.|...++........+..+ -.....+++. ++.++++-...+.|...+..+++
T Consensus 106 ~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 106 HSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVKTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCEEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 334457788887666665444 4678888888754433333222 1223566663 34555555556677777765554
Q ss_pred ceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEE
Q psy14257 571 DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRG 649 (841)
Q Consensus 571 ~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~ 649 (841)
....+..... .... ..+.-|+ ..+|+.+ ..+.|+.
T Consensus 183 ~~~~~~~~~~-------------------~~~~----------~~~~~~~---------------~~~l~~~~~d~~i~i 218 (312)
T 4ery_A 183 CLKTLIDDDN-------------------PPVS----------FVKFSPN---------------GKYILAATLDNTLKL 218 (312)
T ss_dssp EEEEECCSSC-------------------CCEE----------EEEECTT---------------SSEEEEEETTTEEEE
T ss_pred eeeEEeccCC-------------------CceE----------EEEECCC---------------CCEEEEEcCCCeEEE
Confidence 3332211100 0000 0011111 1223332 2344555
Q ss_pred EecCCCCccccceeec-CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCce
Q psy14257 650 VDLEHPYYHTIPTISI-PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQ 728 (841)
Q Consensus 650 ~~l~~~~~~~~~~~~~-~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (841)
.++..... ...+.. ..........+.+..+.++.+-...+.|+..++....
T Consensus 219 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-------------------------- 270 (312)
T 4ery_A 219 WDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE-------------------------- 270 (312)
T ss_dssp EETTTTEE--EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--------------------------
T ss_pred EECCCCcE--EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--------------------------
Confidence 55543211 001100 0011122334555556666666677888888887654
Q ss_pred EEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecC
Q psy14257 729 IQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLE 770 (841)
Q Consensus 729 ~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~ 770 (841)
....+......+..+|+.+.++.|.-+. ....++|.+.+.+
T Consensus 271 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~-~~~d~~i~~W~~d 311 (312)
T 4ery_A 271 IVQKLQGHTDVVISTACHPTENIIASAA-LENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEE-CTTTCCEEEEECC
T ss_pred hhhhhhccCCcEEEEeecCcCCceEEEE-ccCCccEEEecCC
Confidence 2223344556678899998877666552 1245778887764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=94.76 E-value=3.9 Score=42.00 Aligned_cols=184 Identities=10% Similarity=-0.020 Sum_probs=88.0
Q ss_pred CCCEEEEccCCCccc-ccc---ccCcCCCceEEEEcc-CCEEEEEeCCCCeEEEEEecCCcc-------EEEEeeeeecC
Q psy14257 327 DGGIEKAGMHGENRS-PLV---TKNIQWPSSLVIDYN-QDILYWCDSHLNTVESVRVDGSER-------TVSFNLEVLGS 394 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~-~l~---~~~~~~P~glavD~~-~~~lYwaD~~~~~I~~~~ldG~~~-------~~~~~~~~~~~ 394 (841)
++.|..++++..... .+. ...-.....|++.+. .+.++++-...+.|...+++.... +.+..... .
T Consensus 32 dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~ 109 (351)
T 3f3f_A 32 DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND--S 109 (351)
T ss_dssp TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC--C
T ss_pred CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc--c
Confidence 345666665532111 111 123344567888774 244444555567888888876431 11211110 0
Q ss_pred CCccccCCCCCCcccccc---ceEEEEecCCCcEEEEccCCce-EE------EEe------cCCCCCceeEEEcCC---C
Q psy14257 395 DSRVGIPNCRPEDNLWIG---KNLYWVESNLDQIEVAKLSGQF-RR------TLI------AGDMESPRAIALDPR---F 455 (841)
Q Consensus 395 ~~~~~i~~~~~~avdw~~---~~LY~tD~~~~~I~v~~~~G~~-~~------~l~------~~~l~~P~giavd~~---~ 455 (841)
... ..++.|.. +.+.++-...+.|.+.++.... .. .+. .........+++.|. .
T Consensus 110 ~~~-------v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 182 (351)
T 3f3f_A 110 KGS-------LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182 (351)
T ss_dssp SSC-------EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred CCc-------eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence 000 01233322 3444554556788888865321 10 000 022345678888886 4
Q ss_pred CeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCC---EEEEEeCCCCeEEEEEcCC
Q psy14257 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLT---RIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 456 g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~---~LYw~d~~~~~I~~~~~dG 525 (841)
.+|..+... ..+............+... ...-.....+++.+.+. +++.+-...+.|...++..
T Consensus 183 ~~l~~~~~~---~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 183 EKLAVSALE---QAIIYQRGKDGKLHVAAKL---PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CEEEEEETT---EEEEEEECTTSCEEEEEEC---CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred cEEEEecCC---CcEEEEccCCCceeeeeec---CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 555554432 3343333222222222221 02233567888887652 5555555567787777754
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=49.53 Aligned_cols=51 Identities=22% Similarity=0.587 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCCCCCCCccc-----ccccccCCCCCC--CcccCC--CCcEEecCCCceecCCCCccc-cccc
Q psy14257 112 KALVCDGEPACFNGEDEMFC-----DEKQCLRSDCHH--DCYNTP--EGFMCVCPRDMYLQPDLITCS-YLHP 174 (841)
Q Consensus 112 ~~~~Cdg~~~C~~g~de~~C-----~eC~~~~~~C~~--~C~~~~--g~~~C~C~~Gy~l~~d~~~C~-~~~e 174 (841)
.++.| .|+.|+. .| ++|.. .+|.+ .|+++. ++|+|.|++||. |+.|+ +++|
T Consensus 30 ~~y~C----~C~~G~~--~C~~~~~~~C~~--~pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce~~ide 90 (91)
T 1tpg_A 30 RVEYC----WCNSGRA--QCHSVPVKSCSE--PRCFNGGTCQQALYFSDFVCQCPEGFA----GKSCEIDTRA 90 (91)
T ss_dssp CEEEE----ECSSSCC--BCCEECEEECSS--CCSCTTCEEEEESSSSCEEEECCTTCB----SSSCCBCSSC
T ss_pred CCcEe----ECCCCCc--ccccCcCCcccC--CCCCCCCEeecCCCCCCeEeECCCCCc----CCcCCcCCCC
Confidence 35667 7888886 55 45653 46864 799987 999999999996 67786 4543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.51 Score=50.35 Aligned_cols=145 Identities=12% Similarity=-0.109 Sum_probs=59.4
Q ss_pred CCeEEec-cCccccccccccccEEEE--ecc-ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCC
Q psy14257 220 SPFVIFS-NRHELRGVDLRTFNVIAL--ISS-LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295 (841)
Q Consensus 220 ~p~ll~s-~~~~I~~~~~~~~~~~~l--~~~-~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~ 295 (841)
..+++.. ....|+..++.......+ +.+ ...+.++.|.... . +..+-..++.|...++..+........+...
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~--~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~ 99 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-N--RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL 99 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-C--CEEEEETTSSEEEC------CCCCEEECCCC
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-C--EEEEEeCCCeEEEEEcCCCCceeeeeEeccc
Confidence 3344444 344555555554422222 222 2346778887653 3 4445456677877776544200111222222
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCc----cccccccCcCCCceEEEEccCCEEEEEeCCCC
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN----RSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN 371 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~----~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~ 371 (841)
-.....+++.+.++.++ .. ..++.|..++++... ...+....-.....|++.+.++.|+... ..+
T Consensus 100 ~~~v~~~~~~~~~~~l~--~~--------~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~ 168 (377)
T 3dwl_C 100 NRAATFVRWSPNEDKFA--VG--------SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-ADR 168 (377)
T ss_dssp SSCEEEEECCTTSSCCE--EE--------ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-SSS
T ss_pred CCceEEEEECCCCCEEE--EE--------ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe-CCC
Confidence 23344555554332222 11 134567777766443 1222111233455666666544444333 223
Q ss_pred eEEEEEe
Q psy14257 372 TVESVRV 378 (841)
Q Consensus 372 ~I~~~~l 378 (841)
.|...++
T Consensus 169 ~i~iwd~ 175 (377)
T 3dwl_C 169 KAYVLSA 175 (377)
T ss_dssp CEEEEEE
T ss_pred EEEEEEE
Confidence 4444443
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.043 Score=63.99 Aligned_cols=83 Identities=23% Similarity=0.481 Sum_probs=56.8
Q ss_pred cccCCCCCeEecCCCCCCCCCCCC----CCCCCccc----ccccccC-CCCCC--CcccCCCCcEEecCCCceecCCCCc
Q psy14257 100 FDCQDVLRTCIPKALVCDGEPACF----NGEDEMFC----DEKQCLR-SDCHH--DCYNTPEGFMCVCPRDMYLQPDLIT 168 (841)
Q Consensus 100 ~~C~~~~~~Ci~~~~~Cdg~~~C~----~g~de~~C----~eC~~~~-~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~ 168 (841)
..|.+. +.|+. ..| .|. .||.+..| ++|.... ..|++ .|.+ +.|.|++||. |..
T Consensus 493 ~~Cs~~-G~C~~--g~C----~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~----G~~ 557 (690)
T 3fcs_B 493 PVCSQR-GECLC--GQC----VCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWT----GYY 557 (690)
T ss_dssp CGGGGS-EEECS--SSE----EECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEE----SSS
T ss_pred CCCCCC-CEEEC--Cee----EeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCc----CCC
Confidence 458877 89984 566 888 88888777 4565321 35643 6765 8999999997 566
Q ss_pred cc---cccccCCC--CCccC--ceeecCCCCceEEee-cCCee
Q psy14257 169 CS---YLHPCEAW--GTCSQ--DCEPSVSNNSYKCTC-HAGYE 203 (841)
Q Consensus 169 C~---~~~eC~~~--~~Cs~--~C~~~~~~g~~~C~C-~~G~~ 203 (841)
|+ +.++|... ..|+. .|.+ .+|.| .+||.
T Consensus 558 CeC~~~~~~C~~~~g~~C~~~G~C~~------g~C~C~~~Gy~ 594 (690)
T 3fcs_B 558 CNCTTRTDTCMSSNGLLCSGRGKCEC------GSCVCIQPGSY 594 (690)
T ss_dssp SCEECCCTTTBCTTSSBTSSSCEEET------TEEECCSTTCB
T ss_pred CccCCCCCcccCCCCCCCCCCCEEeC------CEEECCCCCcc
Confidence 76 46677531 45654 4532 28999 89997
|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.023 Score=45.37 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=24.8
Q ss_pred cccccCC-CCCcc--CceeecCCCCceEEeec-CCeeecCCC
Q psy14257 171 YLHPCEA-WGTCS--QDCEPSVSNNSYKCTCH-AGYELEPDM 208 (841)
Q Consensus 171 ~~~eC~~-~~~Cs--~~C~~~~~~g~~~C~C~-~G~~l~~d~ 208 (841)
+++||.. ...|. +.|.|+ .|+|+|.|. .||....++
T Consensus 2 DidEC~~~~~~C~~~~~C~Nt--~Gsy~C~~~~~g~~~~~~~ 41 (71)
T 2kl7_A 2 DVNECLTIPEACKGEMKCINH--YGGYLCLPRSAAVINDLHG 41 (71)
T ss_dssp CSCCTTCCCCSCTTEEEEEET--TCCEEEEETTSCCCSCCSC
T ss_pred ccccccCCCCCCCCCCEeECC--CCCeEecccCCcccccccC
Confidence 6789963 46784 489999 999999932 355444333
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0096 Score=56.90 Aligned_cols=52 Identities=25% Similarity=0.682 Sum_probs=40.0
Q ss_pred cCCCCCeEecCCCCCCCCCCCCCCCCCccc----ccccccCCCCCC--CcccC-CCCcEEecCCCce
Q psy14257 102 CQDVLRTCIPKALVCDGEPACFNGEDEMFC----DEKQCLRSDCHH--DCYNT-PEGFMCVCPRDMY 161 (841)
Q Consensus 102 C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~~--~C~~~-~g~~~C~C~~Gy~ 161 (841)
|.+ +.|+ .++.| .|.+||.+..| ++|.. ..+|++ .|.++ +++|+|.|++||.
T Consensus 105 C~~--g~C~-~~~~C----~C~~G~~G~~C~~~~~~C~~-~~~C~~~g~C~~~~~~~~~C~C~~G~~ 163 (169)
T 2vj2_A 105 CVH--GICN-EPWQC----LCETNWGGQLCDKDLNYCGT-HQPCLNGGTCSNTGPDKYQCSCPEGYS 163 (169)
T ss_dssp CSS--EECS-STTCC----EECTTEETTTTCEESCHHHH-TCCCCTTCEEEECSTTCEEEECCTTCC
T ss_pred CCC--CCcC-CCCEE----eCCCCCCCCcccCCCCCCCC-CCCCCCCCEEcCCCCCCcEeECCCCCc
Confidence 655 6776 46778 89999987777 46753 347864 79996 8999999999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.63 E-value=9 Score=44.69 Aligned_cols=149 Identities=9% Similarity=-0.015 Sum_probs=78.5
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecC---CCCCceeEEEcCCCC-eEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAG---DMESPRAIALDPRFG-LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~---~l~~P~giavd~~~g-~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
+++.++-+..+.|.+.++.+.....+... .......++++|... .++.+-.. .+.|...++..........
T Consensus 484 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--d~~v~vwd~~~~~~~~~~~--- 558 (694)
T 3dm0_A 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW--DKTVKVWNLSNCKLRSTLA--- 558 (694)
T ss_dssp SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET--TSCEEEEETTTCCEEEEEC---
T ss_pred CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC--CCeEEEEECCCCcEEEEEc---
Confidence 33444555567787777776655444332 123357888888642 23444333 4566666765443333322
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccC
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~ 568 (841)
..-.....+++.+.+.. +.+-...+.|...++........+.. -.....+++..+..+.+-...+.|...+..+
T Consensus 559 --~h~~~v~~v~~spdg~~-l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 559 --GHTGYVSTVAVSPDGSL-CASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHALCFSPNRYWLCAATEHGIKIWDLES 632 (694)
T ss_dssp --CCSSCEEEEEECTTSSE-EEEEETTSBCEEEETTTTEEEECCBC---SSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred --CCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCceEEEecC---CCcEEEEEEcCCCcEEEEEcCCCEEEEECCC
Confidence 23345678999875544 44555567888888865433222211 1223556664433222222344566666554
Q ss_pred Ccce
Q psy14257 569 GSDV 572 (841)
Q Consensus 569 g~~~ 572 (841)
+..+
T Consensus 633 ~~~~ 636 (694)
T 3dm0_A 633 KSIV 636 (694)
T ss_dssp TEEE
T ss_pred CCCh
Confidence 4433
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.44 E-value=1.1 Score=53.39 Aligned_cols=251 Identities=9% Similarity=-0.042 Sum_probs=125.4
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
.+.++.|.... . ++.+-..++.|...++.++.. .....+...-.....+++.+..+.-+++- ...++.
T Consensus 11 ~V~~l~~s~dg-~--~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s--------~s~Dg~ 78 (753)
T 3jro_A 11 LIHDAVLDYYG-K--RLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILAS--------CSYDGK 78 (753)
T ss_dssp CEEEECCCSSS-C--CEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEE--------EETTSC
T ss_pred eeEEEEECCCC-C--eEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEE--------EeCCCe
Confidence 35567776653 2 444445677888777764431 11122222222344455543311122221 124567
Q ss_pred EEEEccCCCccccc--cccCcCCCceEEEEcc--CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 330 IEKAGMHGENRSPL--VTKNIQWPSSLVIDYN--QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 330 I~~~~~dG~~~~~l--~~~~~~~P~glavD~~--~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
|..+++++.....+ ....-.....+++.+. ++.|+ +-...+.|...++............. ....+
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~dg~I~vwdl~~~~~~~~~~~~~--~~~~v------- 148 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL-VASSDGKVSVVEFKENGTTSPIIIDA--HAIGV------- 148 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE-EEETTSEEEEEECCSSSCCCCEEEEC--CSSCE-------
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEE-EEeCCCcEEEEEeecCCCcceeEeec--CCCce-------
Confidence 88888765432222 2223445667888877 44444 44567788888886652221111100 00000
Q ss_pred Cccccc--------------cceEEEEecCCCcEEEEccCCc----eEEEEecCCCCCceeEEEcCCC--CeEEEEecCC
Q psy14257 406 EDNLWI--------------GKNLYWVESNLDQIEVAKLSGQ----FRRTLIAGDMESPRAIALDPRF--GLLFWTDWDS 465 (841)
Q Consensus 406 ~avdw~--------------~~~LY~tD~~~~~I~v~~~~G~----~~~~l~~~~l~~P~giavd~~~--g~Ly~td~~~ 465 (841)
..+.|. .+.+.++-...+.|.+.++... .....+.........|+++|.. +.++.+-..
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~- 227 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ- 227 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-
Confidence 011111 2566666667788998887643 1222223334567899999983 444444433
Q ss_pred CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 466 ~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
.+.|...++.................-.....+++.+.+..|+.+ ...+.|...+++.
T Consensus 228 -Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 228 -DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-GGDNKVTLWKENL 285 (753)
T ss_dssp -SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE-CSSSCEECCBCCS
T ss_pred -CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE-cCCCEEEEEecCC
Confidence 355655555432211100000000123346788998765555544 4467788887763
|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.0086 Score=46.19 Aligned_cols=39 Identities=18% Similarity=0.497 Sum_probs=28.2
Q ss_pred ccccccCCCCCC----CcccCCCCcEEecCCCceecCCCCcccccccc
Q psy14257 132 DEKQCLRSDCHH----DCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 132 ~eC~~~~~~C~~----~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
++|.. .+|.+ .|.++.++|+|.|++||.+ |..|+..++|
T Consensus 12 d~C~s--nPC~nga~gtC~~~~g~y~C~C~~Gy~~---G~~C~~~~~C 54 (61)
T 2k2s_B 12 AACSS--NPCGPEAAGTCKETNSGYICRCNQGYRI---SLDGTGNVTC 54 (61)
T ss_dssp CHHHH--CSSCSSSCCEEEECSSEEEEECCTTEEE---EECSSSCEEE
T ss_pred CcCcC--CCCcCCCccccccCCCceEeECCCCCcc---CCCCCCCCEe
Confidence 45553 35753 6999999999999999972 3457666566
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.043 Score=60.49 Aligned_cols=61 Identities=21% Similarity=0.520 Sum_probs=40.7
Q ss_pred cccCCCCCeEecCCCCCCCCCCCCCCCCCccccc-ccccC--------CCCCC--CcccCCCCcEEecCCCceecCCCCc
Q psy14257 100 FDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDE-KQCLR--------SDCHH--DCYNTPEGFMCVCPRDMYLQPDLIT 168 (841)
Q Consensus 100 ~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C~e-C~~~~--------~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~ 168 (841)
..|.+. +.|.+..+.| .|..||.+..|.. |.... -.|.+ .|.+.. .|.|++||. |..
T Consensus 250 ~~C~~~-g~C~~~~~~C----~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~----G~~ 317 (423)
T 2gy5_A 250 EGCKSY-VFCLPDPYGC----SCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQ----GLQ 317 (423)
T ss_dssp TTTTTC-CEEETTTTEE----ECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCB----STT
T ss_pred CCCCCC-CEECCCCCeE----EeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCC---ceECCCCCc----CCC
Confidence 358776 8898888888 8999998777743 53210 12322 565443 499999997 567
Q ss_pred cccc
Q psy14257 169 CSYL 172 (841)
Q Consensus 169 C~~~ 172 (841)
|+..
T Consensus 318 Ce~~ 321 (423)
T 2gy5_A 318 CERE 321 (423)
T ss_dssp SCBC
T ss_pred CccC
Confidence 7643
|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.019 Score=39.86 Aligned_cols=28 Identities=21% Similarity=0.648 Sum_probs=22.0
Q ss_pred CCCCC--CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 139 SDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 139 ~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
.+|.+ .|.++.++|+|.|++||. |+.|+
T Consensus 9 ~pC~ngg~C~~~~~~~~C~C~~G~~----G~~Ce 38 (39)
T 1edm_B 9 NPCLNGGSCKDDINSYECWCPFGFE----GKNCE 38 (39)
T ss_dssp CCCCTTCEEEEETTEEEEECCTTCC----STTSC
T ss_pred CCCCCCCEeEcCCCceEeECCCCCc----CCccC
Confidence 36653 799999999999999996 55553
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=14 Score=43.82 Aligned_cols=490 Identities=8% Similarity=0.015 Sum_probs=227.5
Q ss_pred eEEeccCccccccccccccEEEEeccccc----eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCC-
Q psy14257 222 FVIFSNRHELRGVDLRTFNVIALISSLKN----TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGL- 296 (841)
Q Consensus 222 ~ll~s~~~~I~~~~~~~~~~~~l~~~~~~----~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l- 296 (841)
.|.+....++.+.+.....+..+...... +.++..+. ++. ||+. +. +.|++.+...+.+ . .+..++
T Consensus 100 ~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~-~g~--lwi~-t~-~gl~~~~~~~~~~---~-~~~~~~~ 170 (795)
T 4a2l_A 100 RVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEIS-PEQ--LLIS-TP-EGLIMFDIKESKF---I-DDSFSTA 170 (795)
T ss_dssp CEEEEESSCEEEEETTTTEEEEECCEETTEECCCCEEEEEE-TTE--EEEE-ET-TEEEEEETTTTEE---E-CSSSCHH
T ss_pred CEEEEeCCchheeCCCCCeEEeccccccCCCceEEEEEECC-CCC--EEEE-EC-CceEEEECCCCEE---E-eccCCCC
Confidence 44445556777777665554443221111 22332222 233 5554 33 5677776543321 1 111111
Q ss_pred -CC-ccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc-cCcCCCceEEEEccCCEEEEEeCCCCeE
Q psy14257 297 -ST-AEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT-KNIQWPSSLVIDYNQDILYWCDSHLNTV 373 (841)
Q Consensus 297 -~~-p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~-~~~~~P~glavD~~~~~lYwaD~~~~~I 373 (841)
.. ...+..|.. +++|+. + ..+.|.+.+........+.. ..-.....|..|. .+.|+++. ..+.|
T Consensus 171 ~~~~i~~i~~d~~-g~lwig-t---------~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lwigt-~~~Gl 237 (795)
T 4a2l_A 171 MHKTIASTLYRQG-DQIYIG-T---------STDGLYTYSITQKTFEKVIPILGTKQIQAILQQS-PTRIWVAT-EGAGL 237 (795)
T ss_dssp HHTCCEEEEEEET-TEEEEE-E---------SSSCEEEEETTTCCEEECC----CCCEEEEEEEE-TTEEEEEE-BSSCE
T ss_pred CCcceEEEEECCC-CCEEEE-E---------CCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC-CCCEEEEE-CCCCe
Confidence 11 445667643 345442 1 12368888765544333321 1122345667775 45665554 33347
Q ss_pred EEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc-ccceEEEEecCCCcEEEEccCCceEEEEecC-----CC--CC
Q psy14257 374 ESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW-IGKNLYWVESNLDQIEVAKLSGQFRRTLIAG-----DM--ES 445 (841)
Q Consensus 374 ~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw-~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~-----~l--~~ 445 (841)
.+++......+.+.... .....++.....++.. ..++|++... . -|.+++........+... .+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~----~~~~~l~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (795)
T 4a2l_A 238 FLINPKTKEIKNYLHSP----SNPKSISSNYIRSLAMDSQNRLWIGTF-N-DLNIYHEGTDSFASYSSNPVENGSLSQRS 311 (795)
T ss_dssp EEEETTTTEEEEECCCT----TCTTSCSCSBEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECCCTTSTTSCSSSC
T ss_pred EEEeCCCCeEEEeecCC----CCccccCCCeEEEEEEcCCCCEEEEeC-C-hhheEcCCCCeEEEEecCCCCCCCCCCCc
Confidence 77777654433321100 0000011000001101 1255665443 2 466777665444333221 11 34
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCC--CCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRG--AWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~--~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
.+.|..|.. |.|++...+ ..|.+.+......+.+..... ...+ .....|+.|. +++|++... .+.|.+++.
T Consensus 312 i~~i~~D~~-g~lWigt~~---~Gl~~~~~~~~~~~~~~~~~~-~~~l~~~~V~~i~~d~-~g~lWiGt~-~~Gl~~~~~ 384 (795)
T 4a2l_A 312 VRSIFMDSQ-GGMWLGTYF---GGLNYYHPIRNRFKNIRNIPY-KNSLSDNVVSCIVEDK-DKNLWIGTN-DGGLNLYNP 384 (795)
T ss_dssp EEEEEECTT-SCEEEEESS---SCEEEECGGGGSSEEECCCTT-SSSCSCSSEEEEEECT-TSCEEEEES-SSCEEEECT
T ss_pred EEEEEEeCC-cCEEEEECC---CCeEEeCCCcccceEEcCCCC-CCCCCCCeeEEEEECC-CCCEEEEEC-CCCeEEEcC
Confidence 678999975 778776643 568888765444333322100 0111 2346778884 577776654 456888887
Q ss_pred CCCeeEEEEcCC---C-CC--CcceEEEEe-cCe-EEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCC
Q psy14257 524 DGKDHHVVLSNH---D-SL--THPFAIALF-ENH-VYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPC 595 (841)
Q Consensus 524 dG~~~~~i~~~~---~-~l--~~P~gla~~-~~~-lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C 595 (841)
.....+.+.... . .+ ....+|+.+ ++. ||+.-. .+.|.++++.+++-.. +... . +.
T Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~-~~Gl~~~d~~~~~~~~-~~~~--~-------~~----- 448 (795)
T 4a2l_A 385 ITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH-AGGLSILHRNSGQVEN-FNQR--N-------SQ----- 448 (795)
T ss_dssp TTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET-TTEEEEEETTTCCEEE-ECTT--T-------SC-----
T ss_pred CCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC-cCceeEEeCCCCcEEE-eecC--C-------CC-----
Confidence 755444443211 0 11 234566665 467 777654 3568888876654222 1100 0 00
Q ss_pred CCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCcccccee----ecCCCCCc
Q psy14257 596 EMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTI----SIPQVFSP 671 (841)
Q Consensus 596 ~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~----~~~~~~~~ 671 (841)
. +.....+ +..| ....|.+++...+..++.+.......... .+ ....+
T Consensus 449 l-------------~~~~v~~-------i~~d-------~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~i 500 (795)
T 4a2l_A 449 L-------------VNENVYA-------ILPD-------GEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPV-VSKQI 500 (795)
T ss_dssp C-------------SCSCEEE-------EEEC-------SSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBC-CCCCE
T ss_pred c-------------CCCeeEE-------EEEC-------CCCCEEEEecCceeEEeCCCCeEEEcccccccccc-CCceE
Confidence 0 0001111 1111 11224444446676666543211111100 01 11346
Q ss_pred eEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCc
Q psy14257 672 NNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQN 751 (841)
Q Consensus 672 ~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~ 751 (841)
.+|..| ..+.||+... +-|++.+..+... . | ...... . .-....+.+|+.|.. ++
T Consensus 501 ~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~-~--------~-~~~~~~---------~--~l~~~~i~~i~~d~~-g~ 555 (795)
T 4a2l_A 501 TTLFRD-SHKRLWIGGE--EGLSVFKQEGLDI-Q--------K-ASILPV---------S--NVTKLFTNCIYEASN-GI 555 (795)
T ss_dssp EEEEEC-TTCCEEEEES--SCEEEEEEETTEE-E--------E-CCCSCS---------C--GGGGSCEEEEEECTT-SC
T ss_pred EEEEEC-CCCCEEEEeC--CceEEEeCCCCeE-E--------E-ecCCCC---------C--CCCCCeeEEEEECCC-CC
Confidence 778788 4566776663 6788888765441 0 0 000000 0 001234677888854 45
Q ss_pred EEEEecCCCCCeEEEEecCCcceEEEEc-CCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCceEEE
Q psy14257 752 MFIAVSSPTQSKIVVCNLEGEYQTTILS-NESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV 828 (841)
Q Consensus 752 LYw~~~~~~~~~I~v~~l~g~~~~~~~~-~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~~~l 828 (841)
|+++- .+.|.+.+.....-+.+-. ++.. -....+|+.|+. |.|+.... . -|.+.+.+...-+.+
T Consensus 556 lWigT----~~Gl~~~d~~~~~~~~~~~~~gl~----~~~i~~i~~d~~-g~lWi~t~-~---Gl~~~~~~~~~~~~~ 620 (795)
T 4a2l_A 556 IWVGT----REGFYCFNEKDKQIKRYNTTNGLP----NNVVYGILEDSF-GRLWLSTN-R---GISCFNPETEKFRNF 620 (795)
T ss_dssp EEEEE----SSCEEEEETTTTEEEEECGGGTCS----CSCEEEEEECTT-SCEEEEET-T---EEEEEETTTTEEEEE
T ss_pred EEEEe----CCCceeECCCCCcEEEeCCCCCCc----hhheEEEEECCC-CCEEEEcC-C---ceEEEcCCCCcEEEc
Confidence 66652 2367777766543322222 1100 135778888864 77766653 2 277776665444433
|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.024 Score=44.11 Aligned_cols=40 Identities=23% Similarity=0.628 Sum_probs=30.0
Q ss_pred ccccccccCCCCCC--Cccc-----CCCCcEEecCCCceecCCCCccc-ccccc
Q psy14257 130 FCDEKQCLRSDCHH--DCYN-----TPEGFMCVCPRDMYLQPDLITCS-YLHPC 175 (841)
Q Consensus 130 ~C~eC~~~~~~C~~--~C~~-----~~g~~~C~C~~Gy~l~~d~~~C~-~~~eC 175 (841)
.|++|.. .+|.+ .|.+ ..++|.|.|++||. |..|+ ++++|
T Consensus 5 ~c~~C~~--~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~----G~~Ce~~i~~~ 52 (63)
T 1hae_A 5 KCAEKEK--TFCVNGGECFMVKDLSNPSRYLCKCQPGFT----GARCTENVPMK 52 (63)
T ss_dssp ECCHHHH--TTSCTTCEEEEEESSSSSCCEEEECCTTEE----STTSCEECCSS
T ss_pred ccCCCCC--CcCCCCcEEecCCccCCCCCEEEECCCCCc----CCccCcCcCcc
Confidence 3677753 36754 7886 67899999999997 67886 67766
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=93.64 E-value=9.7 Score=41.36 Aligned_cols=309 Identities=11% Similarity=0.007 Sum_probs=151.0
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+++.++-...+.|.+.++........+.........++++ .+.|+.... .+.|...+++......... ..
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~---dg~i~vwd~~~~~~~~~~~-----~h 198 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGST---DRTLKVWNAETGECIHTLY-----GH 198 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEET---TSCEEEEETTTTEEEEEEC-----CC
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeC---CCeEEEEECCcCcEEEEEC-----CC
Confidence 4455555567788888876433333333334456778886 345544443 4677777765432222221 22
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
-.....++++ ++.|+.+ ...+.|...++........+..+ ......+++.+..|+ +-...+.|...+..+++..
T Consensus 199 ~~~v~~~~~~--~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 199 TSTVRCMHLH--EKRVVSG-SRDATLRVWDIETGQCLHVLMGH--VAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp SSCEEEEEEE--TTEEEEE-ETTSEEEEEESSSCCEEEEEECC--SSCEEEEEECSSCEE-EEETTSCEEEEEGGGTEEE
T ss_pred CCcEEEEEec--CCEEEEE-eCCCEEEEEECCCCcEEEEEcCC--cccEEEEEECCCEEE-EEcCCCEEEEEECCCCcEe
Confidence 2334566665 4555544 45678888888754433333222 223456666444444 4445667777776555433
Q ss_pred EEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEe-ecCCeEEEEe
Q psy14257 573 TLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF-SRPREIRGVD 651 (841)
Q Consensus 573 ~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~-~~~~~i~~~~ 651 (841)
..+... .+...+...++ .+|+. +..+.|+..+
T Consensus 273 ~~~~~~--------------------------------~~~v~~~~~~~---------------~~l~~~~~d~~i~i~d 305 (445)
T 2ovr_B 273 HTLQGH--------------------------------TNRVYSLQFDG---------------IHVVSGSLDTSIRVWD 305 (445)
T ss_dssp EEECCC--------------------------------SSCEEEEEECS---------------SEEEEEETTSCEEEEE
T ss_pred EEecCC--------------------------------CCceEEEEECC---------------CEEEEEeCCCeEEEEE
Confidence 322210 00011111111 12222 2344566566
Q ss_pred cCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEE
Q psy14257 652 LEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQL 731 (841)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (841)
+..... ...+. .....+.+++++ .+.++.. ...+.|+..++.... ...
T Consensus 306 ~~~~~~--~~~~~-~~~~~v~~~~~~--~~~l~~~-~~dg~i~vwd~~~~~--------------------------~~~ 353 (445)
T 2ovr_B 306 VETGNC--IHTLT-GHQSLTSGMELK--DNILVSG-NADSTVKIWDIKTGQ--------------------------CLQ 353 (445)
T ss_dssp TTTCCE--EEEEC-CCCSCEEEEEEE--TTEEEEE-ETTSCEEEEETTTCC--------------------------EEE
T ss_pred CCCCCE--EEEEc-CCcccEEEEEEe--CCEEEEE-eCCCeEEEEECCCCc--------------------------EEE
Confidence 543321 11111 111234556665 3444444 467888888875443 111
Q ss_pred EeeC---CCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCC-cceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEe
Q psy14257 732 VVDA---GISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEG-EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSN 807 (841)
Q Consensus 732 i~~~---~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g-~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d 807 (841)
.+.. ....+..|+++ ++.|+.. ...++|.+.++.. +....+..... ...-..+.+++++|...+|....
T Consensus 354 ~~~~~~~~~~~v~~~~~~--~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 354 TLQGPNKHQSAVTCLQFN--KNFVITS---SDDGTVKLWDLKTGEFIRNLVTLES--GGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp EECSTTSCSSCEEEEEEC--SSEEEEE---ETTSEEEEEETTTCCEEEEEEECTT--GGGTCEEEEEEECSSEEEEEEEC
T ss_pred EEccCCCCCCCEEEEEEC--CCEEEEE---eCCCeEEEEECCCCceeeeeecccc--CCCCceEEEEEecCCEEEEEEcc
Confidence 2221 33456677776 4444444 3578999999864 44444421100 00135678888988633333332
Q ss_pred cCCC-cceEEEEecCCC
Q psy14257 808 VTKQ-VVTIEMAFMDGT 823 (841)
Q Consensus 808 ~~~~-~~~I~~~~~dG~ 823 (841)
..+. ..+|.-.+++..
T Consensus 427 ~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 427 RNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSSSSCCEEEEEECCCC
T ss_pred cCCCCccEEEEEECCCC
Confidence 2221 124666665543
|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.036 Score=41.68 Aligned_cols=35 Identities=29% Similarity=0.842 Sum_probs=24.8
Q ss_pred cccccccCCCCCC--Cc-----ccCCCCcEEecCCCceecCCCCcccc
Q psy14257 131 CDEKQCLRSDCHH--DC-----YNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 131 C~eC~~~~~~C~~--~C-----~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
|+||.. .+|.+ .| .+..++|.|.|++||. |+.|+.
T Consensus 8 ~~eC~s--~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~----G~~CE~ 49 (55)
T 3u7u_G 8 CAEKEK--TFCVNGGECFMVKDLSNPSRYLCKCPNEFT----GDRCQN 49 (55)
T ss_dssp CCSTTT--TTSCTTCEEEEECCC--CCCEEEEECTTEE----STTSCE
T ss_pred CCCCcC--CCCCCCCCcCCCCccCCCCCEeEeCCCCCc----CCCcCc
Confidence 577763 47754 78 4667899999999997 666753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.46 E-value=12 Score=44.37 Aligned_cols=265 Identities=6% Similarity=-0.074 Sum_probs=132.6
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEecc--CCEEEEEeCCCCeEE
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQ--LTRIYWIDAKSDSIH 519 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~--~~~LYw~d~~~~~I~ 519 (841)
.......++++|.+.+|+.... .+.|...++.+.....+.... ..-.....+++.+. +..|+ +-...+.|.
T Consensus 8 H~~~V~~l~~s~dg~~latg~~---dg~I~vwd~~~~~~~~~~~l~---~h~~~V~~l~~s~~~~~~~l~-s~s~Dg~I~ 80 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSS---DKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILA-SCSYDGKVL 80 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEET---TTEEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCTTSCSEEE-EEETTSCEE
T ss_pred CcceeEEEEECCCCCeEEEEEC---CCcEEEEecCCCCCccceecc---CCcCceEEEEecCCCCCCEEE-EEeCCCeEE
Confidence 3455678888887666665543 456666666543333332211 22334567888655 44444 444567888
Q ss_pred EEEcCCCeeEEEEcCCCCCCcceEEEEe-c--CeEEEEeCCCCeEEEEeccCCcceE--EEecccCCCceeccCCcccCC
Q psy14257 520 TVTYDGKDHHVVLSNHDSLTHPFAIALF-E--NHVYWTDWRTNSVIRANKWNGSDVT--LIQRTLTQPFIYVNGVVKKSP 594 (841)
Q Consensus 520 ~~~~dG~~~~~i~~~~~~l~~P~gla~~-~--~~lY~td~~~~~i~~~~~~~g~~~~--~i~~~~~~p~~~h~qp~~~n~ 594 (841)
..++++.....+............+++. . +.++++-...+.|...+..++.... .+....
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~--------------- 145 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA--------------- 145 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS---------------
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC---------------
Confidence 8888876532222221112334666763 2 4555555566777766655443221 111100
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEEEecCCCCccccceeec-CCCCCce
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRGVDLEHPYYHTIPTISI-PQVFSPN 672 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~~~l~~~~~~~~~~~~~-~~~~~~~ 672 (841)
+....+ +..|.. +..++.........+|+.+ ..+.|+..++............+ .....+.
T Consensus 146 -----~~v~~l----------~~~p~~--~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 146 -----IGVNSA----------SWAPAT--IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp -----SCEEEE----------EECCCC-----------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred -----CceEEE----------EecCcc--cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence 000000 001110 0000000000123334444 34556666665432211111111 1234578
Q ss_pred EEEEecCC--CEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEe--eCCCCCcceeEEeec
Q psy14257 673 NLNFDAAN--KKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVV--DAGISHPSGLAIDWI 748 (841)
Q Consensus 673 ~v~~d~~~--~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~p~glAvD~~ 748 (841)
+++|.|.. +.+..+-...+.|+..++....... ...+. ......+.+|++++.
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-----------------------~~~~~~~~~~~~~v~~l~~spd 265 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-----------------------KKTLLKEEKFPDVLWRASWSLS 265 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC-----------------------BCCBSSSSCCSSCCCCEEECTT
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc-----------------------eeEEeccCCCCCceEEEEEcCC
Confidence 99999984 4555555578889988887643000 00000 123456788999988
Q ss_pred CCcEEEEecCCCCCeEEEEecCC
Q psy14257 749 AQNMFIAVSSPTQSKIVVCNLEG 771 (841)
Q Consensus 749 ~~~LYw~~~~~~~~~I~v~~l~g 771 (841)
++.|+.. ...+.|.+.+++.
T Consensus 266 g~~l~s~---s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 266 GNVLALS---GGDNKVTLWKENL 285 (753)
T ss_dssp TCCEEEE---CSSSCEECCBCCS
T ss_pred CCEEEEE---cCCCEEEEEecCC
Confidence 8777666 3467899998874
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.44 E-value=8 Score=39.77 Aligned_cols=205 Identities=9% Similarity=0.021 Sum_probs=105.9
Q ss_pred CceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeee-cCCCccccCCCCCCccccc-cceEEEEecCCCcEEEE
Q psy14257 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL-GSDSRVGIPNCRPEDNLWI-GKNLYWVESNLDQIEVA 428 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~-~~~~~~~i~~~~~~avdw~-~~~LY~tD~~~~~I~v~ 428 (841)
-..|++.+..+.+.++-...++|...++.............+ +....+ .++.|. .+++.++-...+.|...
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V-------~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV-------SDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCE-------EEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCE-------EEEEECCCCCEEEEEcccccceEE
Confidence 456777777666666666677788777765432211111111 000000 011121 14444455556777777
Q ss_pred ccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccC-CE
Q psy14257 429 KLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQL-TR 507 (841)
Q Consensus 429 ~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~-~~ 507 (841)
+...................+...+...+|+.... ...+...++.+.....+... ........+++.+.. ..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---d~~~~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---DKTIKLWNTLGVCKYTVQDE----SHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEEECTTSCEEEEECSS----SCSSCEEEEEECSCSSSC
T ss_pred eecccceeeeecCCCCceeEEEEeecCccceeecC---CCeEEEEEeCCCceEEEEec----cccCcccceEEccCCCCc
Confidence 77666555444444456667777776666654443 34555555554433332210 122334556665443 34
Q ss_pred EEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 508 IYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 508 LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
++++-...+.|...++............ -.....|++. ++.++++-...+.|...+..+++.
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 4445555667888888766554444332 1234567764 455555555566776666554443
|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.002 Score=65.47 Aligned_cols=91 Identities=9% Similarity=-0.061 Sum_probs=54.1
Q ss_pred cccCCCCCeEecC--CCCCCCCCCCCCCCCCccc----cccccc---------------------------CCCCC--CC
Q psy14257 100 FDCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC----DEKQCL---------------------------RSDCH--HD 144 (841)
Q Consensus 100 ~~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C----~eC~~~---------------------------~~~C~--~~ 144 (841)
.+|.++ ++|+.. +|.| .|+.||....| ++|... ..+|. .+
T Consensus 105 ~pC~ng-G~C~~~~~sy~C----~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ngg~ 179 (267)
T 4fbr_A 105 IKSNDG-GKTLTGTTTYNG----EGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGK 179 (267)
T ss_dssp EECSST-TSEEEEEEEETT----SCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECSSTTS
T ss_pred CCCCCC-CEEecCCccEEe----eCCCCccccCCCCCcccccccCCcCCccccCCcceecccccccccccCCCCCCCCCE
Confidence 358887 889886 8889 89999876555 222100 01232 26
Q ss_pred cccCCCCcEEecCCCceecCCCCcccc-ccccCCCCCccC-ceeecCCCCceEEeecCCe
Q psy14257 145 CYNTPEGFMCVCPRDMYLQPDLITCSY-LHPCEAWGTCSQ-DCEPSVSNNSYKCTCHAGY 202 (841)
Q Consensus 145 C~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~eC~~~~~Cs~-~C~~~~~~g~~~C~C~~G~ 202 (841)
|.+...+|+|.|++||. ++.|+. +++|+....|.. .|.+ .+.+.|.|..++
T Consensus 180 C~dg~~~y~C~Cp~Gf~----G~~c~~~i~ec~~~~~c~~~~c~~---gG~~~~~C~~g~ 232 (267)
T 4fbr_A 180 TLSGTMTYNGEGPIGFR----GTLTSPDTYTVENQWGGSTAPWNP---GGFWMIGARNGQ 232 (267)
T ss_dssp EEEEEEEETTSCCEEEE----EEEEETTEEEEEEECSCTTSCCEE---EEEEECCCCTTC
T ss_pred eeCCCCCeEEeCCCCcc----ccccccccceeccCCCccCCcccC---CCeEEEecCCCC
Confidence 77777888888888886 446653 455543333433 3333 455555565554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.35 E-value=9.8 Score=45.07 Aligned_cols=177 Identities=8% Similarity=-0.011 Sum_probs=91.9
Q ss_pred CEEEEccCCC-ccccccccCcCCCceEEEEccCCEEEEEeCCC----CeEEEEEecCCcc--EEEEeeeeecCCCccccC
Q psy14257 329 GIEKAGMHGE-NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL----NTVESVRVDGSER--TVSFNLEVLGSDSRVGIP 401 (841)
Q Consensus 329 ~I~~~~~dG~-~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~----~~I~~~~ldG~~~--~~~~~~~~~~~~~~~~i~ 401 (841)
.|++.++++. ....-.... ...++++.++++.||++.... ..|++.++.+... +.++.... .....+
T Consensus 202 ~l~v~dl~~g~~~l~~~~~~--~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~--~~~~~~-- 275 (751)
T 2xe4_A 202 TIEFKRISDPSQTIADKVSG--TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHN--PLFSAF-- 275 (751)
T ss_dssp EEEEEETTCTTCCCCCCEEE--ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCC--TTCEEE--
T ss_pred EEEEEECCCCCEeCCccccC--ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCC--CceEEE--
Confidence 5999998875 421111111 146788999888888876431 4789999977642 23332110 000000
Q ss_pred CCCCCccccccceEEEEec--CCCcEEEEccCCc--eE--EEEecCCCCCc-eeEEEcCCCCeEEEE-ecC-CCCCeEEE
Q psy14257 402 NCRPEDNLWIGKNLYWVES--NLDQIEVAKLSGQ--FR--RTLIAGDMESP-RAIALDPRFGLLFWT-DWD-SKAPRIER 472 (841)
Q Consensus 402 ~~~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~--~~--~~l~~~~l~~P-~giavd~~~g~Ly~t-d~~-~~~~~I~r 472 (841)
.++...++.|+|+.. ....|++.++++. .. +.+.. ....| ..+.. ..++.||+. +.. ....+|++
T Consensus 276 ----~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~s~~~-~~g~~l~~~t~~~~a~~~~L~~ 349 (751)
T 2xe4_A 276 ----MYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGVRYDVQM-HGTSHLVILTNEGGAVNHKLLI 349 (751)
T ss_dssp ----EEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTCCEEEEE-ETTTEEEEEECTTTCTTCEEEE
T ss_pred ----EEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCceEEEee-eeCCEEEEEeCCCCCCCcEEEE
Confidence 011223356776543 2457888888753 22 33332 22223 22221 235666665 432 24679999
Q ss_pred ecCCC-CCcEE-EEEecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEc
Q psy14257 473 CSMSG-EHRSV-IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTY 523 (841)
Q Consensus 473 ~~ldG-~~~~~-i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~ 523 (841)
+++++ ...+. ++.. ..-....++++ .++.||++-.. ..+|+.+++
T Consensus 350 ~d~~~~~~~~~~li~~----~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 350 APRGQPSDWSHVLVDH----SEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EETTSTTCCCCEEECC----CSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred EcCCCcccceeeEECC----CCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence 99984 33333 4331 11112244555 46788876543 347778885
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=93.20 E-value=8.4 Score=39.36 Aligned_cols=122 Identities=7% Similarity=-0.051 Sum_probs=66.4
Q ss_pred CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC-Cc-EEEEEecccCCCCCCceeEEEecc-CCEEEEEeCCCCe
Q psy14257 441 GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE-HR-SVIVRVDLLTSRGAWPNGLTLDYQ-LTRIYWIDAKSDS 517 (841)
Q Consensus 441 ~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~-~~-~~i~~~~~~~~~~~~P~glalD~~-~~~LYw~d~~~~~ 517 (841)
+.......|+++|...+|+.... .+.|...+++.. .. +.+.... ..-.....+++.+. +++++++-...+.
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSS---DQHIKVFKLDKDTSNWELSDSWR---AHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEET---TSEEEEEEECSSSCCEEEEEEEE---CCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccccceeEEEEcCCCCEEEEeeC---CCeEEEEECCCCCCcceecceec---cCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 34456788999987666665543 356666666532 21 2222110 23345678888764 2444445445678
Q ss_pred EEEEEcCCCe---------eEEEEcCCCCCCcceEEEEec---CeEEEEeCCCCeEEEEeccCCc
Q psy14257 518 IHTVTYDGKD---------HHVVLSNHDSLTHPFAIALFE---NHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 518 I~~~~~dG~~---------~~~i~~~~~~l~~P~gla~~~---~~lY~td~~~~~i~~~~~~~g~ 570 (841)
|...+++... ........ -.....+++.. +.++++-...+.|...+..+++
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred EEEEecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 8888887642 11222221 23346677742 4555554556677777655544
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.13 E-value=8.2 Score=39.03 Aligned_cols=275 Identities=10% Similarity=0.005 Sum_probs=142.8
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
.-.....|++ +.+++|+.... .+.|...+++......... ..-.....+++.+.+..|+.+. ..+.|...
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~---dg~v~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~ 86 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSR---DGTVRLWSKDDQWLGTVVY-----TGQGFLNSVCYDSEKELLLFGG-KDTMINGV 86 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEET---TSEEEEEEESSSEEEEEEE-----ECSSCEEEEEEETTTTEEEEEE-TTSCEEEE
T ss_pred CCCCcEEEEe-cCCCEEEEEEc---CCcEEEEECCCCEEEEEee-----cCCccEEEEEECCCCCEEEEec-CCCeEEEE
Confidence 3456678888 76667665553 4667777765544333333 2345678899998766666555 46777777
Q ss_pred EcCCCe----eEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCC
Q psy14257 522 TYDGKD----HHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEM 597 (841)
Q Consensus 522 ~~dG~~----~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~ 597 (841)
++.... ...+ ..+ -.....+++.++.|+.+ ...+.|...+ .++....+.....
T Consensus 87 ~~~~~~~~~~~~~~-~~~--~~~i~~~~~~~~~l~~~-~~d~~i~~~d--~~~~~~~~~~~~~----------------- 143 (313)
T 3odt_A 87 PLFATSGEDPLYTL-IGH--QGNVCSLSFQDGVVISG-SWDKTAKVWK--EGSLVYNLQAHNA----------------- 143 (313)
T ss_dssp ETTCCTTSCC-CEE-CCC--SSCEEEEEEETTEEEEE-ETTSEEEEEE--TTEEEEEEECCSS-----------------
T ss_pred EeeecCCCCcccch-hhc--ccCEEEEEecCCEEEEE-eCCCCEEEEc--CCcEEEecccCCC-----------------
Confidence 765431 2222 111 22335666655554444 4456666665 2222222221100
Q ss_pred CCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEe-ecCCeEEEEecCCCCccccceeecCCCCCceEEEE
Q psy14257 598 NNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF-SRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNF 676 (841)
Q Consensus 598 ~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 676 (841)
....++. .| ....+|+. +....|+..+... ....+.......+..+++
T Consensus 144 ---~v~~~~~----------~~--------------~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~ 192 (313)
T 3odt_A 144 ---SVWDAKV----------VS--------------FSENKFLTASADKTIKLWQNDK----VIKTFSGIHNDVVRHLAV 192 (313)
T ss_dssp ---CEEEEEE----------EE--------------TTTTEEEEEETTSCEEEEETTE----EEEEECSSCSSCEEEEEE
T ss_pred ---ceeEEEE----------cc--------------CCCCEEEEEECCCCEEEEecCc----eEEEEeccCcccEEEEEE
Confidence 0000000 00 01111222 2233344443111 111111212345678888
Q ss_pred ecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEe
Q psy14257 677 DAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAV 756 (841)
Q Consensus 677 d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~ 756 (841)
.+... + ++-...+.|+..++.... ....+......+..|++.+.+ .|+..
T Consensus 193 ~~~~~-~-~~~~~dg~i~i~d~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~-~l~~~- 242 (313)
T 3odt_A 193 VDDGH-F-ISCSNDGLIKLVDMHTGD--------------------------VLRTYEGHESFVYCIKLLPNG-DIVSC- 242 (313)
T ss_dssp EETTE-E-EEEETTSEEEEEETTTCC--------------------------EEEEEECCSSCEEEEEECTTS-CEEEE-
T ss_pred cCCCe-E-EEccCCCeEEEEECCchh--------------------------hhhhhhcCCceEEEEEEecCC-CEEEE-
Confidence 87766 4 444467888888886544 222333455678889998877 45544
Q ss_pred cCCCCCeEEEEecCCcc-eEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCC
Q psy14257 757 SSPTQSKIVVCNLEGEY-QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 757 ~~~~~~~I~v~~l~g~~-~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~ 823 (841)
...++|.+.++.... ...+... .....+|++.|... |+-... . +.|..-+++..
T Consensus 243 --~~dg~v~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~-~~~~~~-d--g~i~iw~~~~~ 297 (313)
T 3odt_A 243 --GEDRTVRIWSKENGSLKQVITLP-------AISIWSVDCMSNGD-IIVGSS-D--NLVRIFSQEKS 297 (313)
T ss_dssp --ETTSEEEEECTTTCCEEEEEECS-------SSCEEEEEECTTSC-EEEEET-T--SCEEEEESCGG
T ss_pred --ecCCEEEEEECCCCceeEEEecc-------CceEEEEEEccCCC-EEEEeC-C--CcEEEEeCCCC
Confidence 357889999986554 3333333 34778999988754 332222 2 34666655543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=5.9 Score=39.00 Aligned_cols=107 Identities=9% Similarity=0.038 Sum_probs=60.1
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC--CCCCc-----EEEEEecccCCCCCCceeEEEeccCCEEEEEeCC
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM--SGEHR-----SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK 514 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l--dG~~~-----~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~ 514 (841)
+...=.+|.+|++ |.||... .++|+|.+. ++... ..|.. .....-.-|.+|+ ++.||-+.
T Consensus 86 Gw~~F~a~~fD~~-G~LYav~----dG~iyr~~pP~~~~~~Wl~~a~~vg~-----~gw~~~~~lff~p-~G~Lyav~-- 152 (236)
T 1tl2_A 86 GWNQFQFLFFDPN-GYLYAVS----KDKLYKASPPQSDTDNWIARATEVGS-----GGWSGFKFLFFHP-NGYLYAVH-- 152 (236)
T ss_dssp CGGGCSEEEECTT-SCEEEEE----TTEEEEESCCCSTTCCHHHHSEEEEC-----SSGGGEEEEEECT-TSCEEEEE--
T ss_pred ccccceEEEECCC-CCEEEeC----CCEEEEeCCCcCCCCceeccccEecc-----CCCCceEEEEECC-CceEEEEe--
Confidence 3333568999975 9999993 479999987 44321 33333 3444457888985 68899877
Q ss_pred CCeEEEE-EcCCC------eeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEEEEe
Q psy14257 515 SDSIHTV-TYDGK------DHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 515 ~~~I~~~-~~dG~------~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~~~~ 565 (841)
.+++++- .+.+. ..+++.... --..++ |.. .++.||+.. .+.+++..
T Consensus 153 dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~-l~f~~~G~l~~v~--~g~~Y~~~ 207 (236)
T 1tl2_A 153 GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKF-LFFSSVGTLFGVQ--GGKFYEDY 207 (236)
T ss_dssp TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEE-EEECTTSCEEEEE--TTEEEEES
T ss_pred CCcEEecCCCCCCCcccccccceeccCC-cceEEE-EEECCCCcEEEEe--CCeEEecC
Confidence 4556543 33221 122222121 111122 222 357787777 66676654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=92.91 E-value=4.4 Score=42.81 Aligned_cols=95 Identities=8% Similarity=-0.099 Sum_probs=49.9
Q ss_pred CCCcEEEEccCCce---EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC----cEEEEEecccCCCC
Q psy14257 421 NLDQIEVAKLSGQF---RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH----RSVIVRVDLLTSRG 493 (841)
Q Consensus 421 ~~~~I~v~~~~G~~---~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~----~~~i~~~~~~~~~~ 493 (841)
..+.|.+.++.... ....+.........++++|...+|+.... .+.|...+++... ...+.. ..-
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~-----~h~ 146 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG---ARVISVCYFEQENDWWVSKHLKR-----PLR 146 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES---SSCEEECCC-----CCCCEEECS-----SCC
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec---CCeEEEEEECCcccceeeeEeec-----ccC
Confidence 34556666655432 11222233356778999987666666554 3567777776543 222211 134
Q ss_pred CCceeEEEeccCCEEEEEeCCCCeEEEEEcC
Q psy14257 494 AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~~~~~I~~~~~d 524 (841)
.....+++.+.+..|+.+. ..+.|...++.
T Consensus 147 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 176 (377)
T 3dwl_C 147 STILSLDWHPNNVLLAAGC-ADRKAYVLSAY 176 (377)
T ss_dssp SCEEEEEECTTSSEEEEEE-SSSCEEEEEEC
T ss_pred CCeEEEEEcCCCCEEEEEe-CCCEEEEEEEE
Confidence 4567899987665555544 45678888764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=92.90 E-value=10 Score=39.54 Aligned_cols=231 Identities=8% Similarity=-0.022 Sum_probs=117.5
Q ss_pred eEEEecCCCeEEEEEecCCccc----ceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-CCc
Q psy14257 265 VFWTDVIDDKIYNATLIGNSLS----NIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GEN 339 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~~~~~----~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~ 339 (841)
+..+-..++.|...++..+... .....+.........+++.+.+ -+++ + ...++.|..+++. |+.
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~l~-s-------~s~D~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--CFAI-S-------SSWDKTLRLWDLRTGTT 110 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--TEEE-E-------EETTSEEEEEETTSSCE
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--CEEE-E-------EcCCCcEEEEECCCCcE
Confidence 6666666777777666432100 1111222222334556665533 2322 1 1235677777765 332
Q ss_pred cccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEee-------e--eecCCCccccCCCCCCcccc
Q psy14257 340 RSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL-------E--VLGSDSRVGIPNCRPEDNLW 410 (841)
Q Consensus 340 ~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~-------~--~~~~~~~~~i~~~~~~avdw 410 (841)
...+ ...-.....+++.+.++.|+-+. ..+.|...++.+......... . .+.++.. ....+..
T Consensus 111 ~~~~-~~h~~~v~~v~~sp~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~ 182 (343)
T 2xzm_R 111 YKRF-VGHQSEVYSVAFSPDNRQILSAG-AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK------SANKVQP 182 (343)
T ss_dssp EEEE-ECCCSCEEEEEECSSTTEEEEEE-TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCC------SCSCCCS
T ss_pred EEEE-cCCCCcEEEEEECCCCCEEEEEc-CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccc------cccccCC
Confidence 2222 22334556788888877776554 567788888765432221100 0 0000000 0000000
Q ss_pred ccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEeccc
Q psy14257 411 IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLL 489 (841)
Q Consensus 411 ~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~ 489 (841)
.+.++.+-...+.|.+.+..+....++. ........|+++|...+|..... .+.|...++. .........
T Consensus 183 -~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~---dg~v~iwd~~~~~~~~~~~~---- 253 (343)
T 2xzm_R 183 -FAPYFASVGWDGRLKVWNTNFQIRYTFK-AHESNVNHLSISPNGKYIATGGK---DKKLLIWDILNLTYPQREFD---- 253 (343)
T ss_dssp -SCCEEEEEETTSEEEEEETTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEET---TCEEEEEESSCCSSCSEEEE----
T ss_pred -CCCEEEEEcCCCEEEEEcCCCceeEEEc-CccccceEEEECCCCCEEEEEcC---CCeEEEEECCCCcccceeec----
Confidence 1245556566788888887665554443 33456789999998666554443 4666666662 222222222
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~ 526 (841)
.-.....+++.+....|.... .+.|...++...
T Consensus 254 --~~~~v~~v~~sp~~~~la~~~--d~~v~iw~~~~~ 286 (343)
T 2xzm_R 254 --AGSTINQIAFNPKLQWVAVGT--DQGVKIFNLMTQ 286 (343)
T ss_dssp --CSSCEEEEEECSSSCEEEEEE--SSCEEEEESSSC
T ss_pred --CCCcEEEEEECCCCCEEEEEC--CCCEEEEEeCCC
Confidence 122367889987655444332 356777777543
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.045 Score=55.92 Aligned_cols=41 Identities=22% Similarity=0.531 Sum_probs=31.1
Q ss_pred ccccccC-CCCCccC--ceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 170 SYLHPCE-AWGTCSQ--DCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 170 ~~~~eC~-~~~~Cs~--~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
+++|||. ....|.. .|.|+ .|+|.|.|.+||.. ++..|.++
T Consensus 3 ~DiDEC~~~~~~C~~~a~C~Nt--~Gsy~C~C~~Gy~G--nG~~C~d~ 46 (285)
T 1gl4_A 3 LAQQTCANNRHQCSVHAECRDY--ATGFCCRCVANYTG--NGRQCVAE 46 (285)
T ss_dssp ----CHHHHGGGSCTTEEEEEC--SSCEEEEECTTEEE--CSSSEEET
T ss_pred ccchhccCCCCCCCCCCEeEcC--CCCeEEEcCCCCCC--CCCcCCCC
Confidence 3678896 3467864 79999 99999999999984 67899987
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.12 Score=60.18 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=40.2
Q ss_pred cccCCCCCeEecCCCCCCCCCCCCCCCCCcccc------cccccC-CCCCC--CcccCCCCcEEec-CCCceecCCCCcc
Q psy14257 100 FDCQDVLRTCIPKALVCDGEPACFNGEDEMFCD------EKQCLR-SDCHH--DCYNTPEGFMCVC-PRDMYLQPDLITC 169 (841)
Q Consensus 100 ~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C~------eC~~~~-~~C~~--~C~~~~g~~~C~C-~~Gy~l~~d~~~C 169 (841)
..|.++ +.|.. ..| .|..||.+..|. +|...+ ..|++ .|.+ ..|.| ++||. |..|
T Consensus 534 ~~C~~~-G~C~~--g~C----~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~----g~C~C~~~Gy~----G~~C 598 (690)
T 3fcs_B 534 EMCSGH-GQCSC--GDC----LCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSCVCIQPGSY----GDTC 598 (690)
T ss_dssp SBGGGS-EEEET--TEE----EECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET----TEEECCSTTCB----STTS
T ss_pred CCCCCC-CEecC--Cee----ECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC----CEEECCCCCcc----CCCc
Confidence 468876 89977 667 899999887773 454322 35643 6754 39999 99997 6677
Q ss_pred cc
Q psy14257 170 SY 171 (841)
Q Consensus 170 ~~ 171 (841)
+.
T Consensus 599 e~ 600 (690)
T 3fcs_B 599 EK 600 (690)
T ss_dssp CB
T ss_pred Cc
Confidence 65
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=92.08 E-value=18 Score=42.13 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=29.2
Q ss_pred EEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcceEEEEecCeEEEEe
Q psy14257 500 TLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHPFAIALFENHVYWTD 555 (841)
Q Consensus 500 alD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P~gla~~~~~lY~td 555 (841)
++...++.||+.+ ..+.|+.++.. |..+..+.........|... ..++++|++-
T Consensus 464 ~~~t~gg~vf~g~-~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~-~~~G~~yva~ 518 (668)
T 1kv9_A 464 TLSTAGNLVFQGT-AAGQMHAYSADKGEALWQFEAQSGIVAAPMTF-ELAGRQYVAI 518 (668)
T ss_dssp EEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEE
T ss_pred eeEeCCCEEEEEC-CcccchhhhhhcChhheEecCCCCcccCceEE-EECCEEEEEE
Confidence 3334567788774 45678888765 44444443332223344433 2567777664
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=91.86 E-value=15 Score=39.12 Aligned_cols=116 Identities=10% Similarity=-0.030 Sum_probs=69.9
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
.+.++++|.+.+|+.... .+.|...+++......... ..-.....+++.+.+..|+-+ ...+.|...++..
T Consensus 126 v~~v~~s~dg~~l~s~~~---d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~l~s~-s~d~~v~iwd~~~ 196 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAE---DRLIRIWDIENRKIVMILQ-----GHEQDIYSLDYFPSGDKLVSG-SGDRTVRIWDLRT 196 (393)
T ss_dssp EEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTT
T ss_pred EEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEc-----cCCCCEEEEEEcCCCCEEEEe-cCCCcEEEEECCC
Confidence 568999997666655543 4567777776443322222 233456788898776666544 4467888888876
Q ss_pred CeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 526 KDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 526 ~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
......+... .....+++. ++.++.+-...+.|...+..++....
T Consensus 197 ~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~ 243 (393)
T 1erj_A 197 GQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243 (393)
T ss_dssp TEEEEEEECS---SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred CeeEEEEEcC---CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 5443333321 234566664 45666666666777777766655433
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=91.81 E-value=15 Score=38.96 Aligned_cols=297 Identities=10% Similarity=0.073 Sum_probs=149.8
Q ss_pred cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEE
Q psy14257 440 AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIH 519 (841)
Q Consensus 440 ~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~ 519 (841)
.+.......|++.|...+|+-... .+.|..-++........+. ........+++.+.+..|. +-...+.|.
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~-----~h~~~v~~~~~s~~g~~la-s~~~d~~v~ 133 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQ---DGRLIVWNALTSQKTHAIK-----LHCPWVMECAFAPNGQSVA-CGGLDSACS 133 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEET---TSEEEEEETTTTEEEEEEE-----CCCTTCCCCEECTTSSEEE-ECCSSSCCE
T ss_pred cccccEEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCccceEEe-----cCCCCEEEEEECCCCCEEE-EeeCCCcEE
Confidence 344456789999998666665553 3566666664433333333 3344567888987655554 444456666
Q ss_pred EEEcCCCee-------EEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCc
Q psy14257 520 TVTYDGKDH-------HVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVV 590 (841)
Q Consensus 520 ~~~~dG~~~-------~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~ 590 (841)
..++..... ...+.++ -.....+++. .+..+++-...+.|...+..+|+....+..... .
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh--~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~---------~ 202 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGH--KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP---------S 202 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCC--SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS---------S
T ss_pred EEECCCCccccCCccceeeccCC--CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC---------C
Confidence 666643211 0011111 0111223332 233444555566777777666654443321100 0
Q ss_pred ccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEE-eecCCeEEEEecCCCCccccceeecCCCC
Q psy14257 591 KKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFII-FSRPREIRGVDLEHPYYHTIPTISIPQVF 669 (841)
Q Consensus 591 ~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 669 (841)
+ | .....+.. ..+ ....+|+ -+....|+..++...... ...+ .....
T Consensus 203 ~------------h------~~~v~~~~-----~~~-------~~~~~l~sgs~D~~v~~wd~~~~~~~-~~~~-~~h~~ 250 (380)
T 3iz6_a 203 G------------H------TADVLSLS-----INS-------LNANMFISGSCDTTVRLWDLRITSRA-VRTY-HGHEG 250 (380)
T ss_dssp S------------C------CSCEEEEE-----ECS-------SSCCEEEEEETTSCEEEEETTTTCCC-CEEE-CCCSS
T ss_pred C------------C------ccCeEEEE-----eec-------CCCCEEEEEECCCeEEEEECCCCCcc-eEEE-CCcCC
Confidence 0 0 00001100 000 0111222 234456666666422111 1111 11224
Q ss_pred CceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEee-------CCCCCcce
Q psy14257 670 SPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVD-------AGISHPSG 742 (841)
Q Consensus 670 ~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~p~g 742 (841)
.+.+|+|.|....|. +-...++|+..++.... ...+.. .....+..
T Consensus 251 ~v~~v~~~p~~~~l~-s~s~D~~i~lwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~v~~ 303 (380)
T 3iz6_a 251 DINSVKFFPDGQRFG-TGSDDGTCRLFDMRTGH--------------------------QLQVYNREPDRNDNELPIVTS 303 (380)
T ss_dssp CCCEEEECTTSSEEE-EECSSSCEEEEETTTTE--------------------------EEEEECCCCSSSCCSSCSCSE
T ss_pred CeEEEEEecCCCeEE-EEcCCCeEEEEECCCCc--------------------------EEEEecccccccccccCceEE
Confidence 578899998776655 44478899999887654 111111 11234688
Q ss_pred eEEeecCCcEEEEecCCCCCeEEEEecCCcce-EEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecC
Q psy14257 743 LAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQ-TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD 821 (841)
Q Consensus 743 lAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~-~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~d 821 (841)
+|+.+.++.|+-. ...+.|.+.++..... ..+..-. .+-......|++.|...+|.=..+. ++|..-++.
T Consensus 304 ~~~s~~g~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~iW~~~ 374 (380)
T 3iz6_a 304 VAFSISGRLLFAG---YSNGDCYVWDTLLAEMVLNLGTLQ---NSHEGRISCLGLSSDGSALCTGSWD---KNLKIWAFS 374 (380)
T ss_dssp EEECSSSSEEEEE---CTTSCEEEEETTTCCEEEEECCSC---SSCCCCCCEEEECSSSSEEEEECTT---SCEEEEECC
T ss_pred EEECCCCCEEEEE---ECCCCEEEEECCCCceEEEEeccc---CCCCCceEEEEECCCCCEEEEeeCC---CCEEEEecC
Confidence 9999888777666 3578899999764433 3332100 0003467899999976555433332 246555565
Q ss_pred CCc
Q psy14257 822 GTK 824 (841)
Q Consensus 822 G~~ 824 (841)
|..
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=91.71 E-value=16 Score=39.20 Aligned_cols=278 Identities=13% Similarity=0.033 Sum_probs=138.3
Q ss_pred cccccceEEEEecCCCcEEEEccCC-ceEEEEec-CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEE
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSG-QFRRTLIA-GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G-~~~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~ 485 (841)
+||-.+++.-+- ..+.|++.+... +...++-. ..-.....|++.|.+.+|..... .+.|..-++..........
T Consensus 111 l~wS~~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~---Dg~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 111 VDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp EEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEEC
T ss_pred EEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC---CCeEEEEEcCCCcEEEEEe
Confidence 567666654332 356788888764 43333322 22344689999998666665543 3566666664332221111
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEE-EEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEE
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV-VLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIR 563 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~-i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~ 563 (841)
..-.....++.+ .. +..+-...+.+...+........ .+..+ .....++... .+....+-...+.|..
T Consensus 187 -----~h~~~v~~~s~~--~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h--~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 187 -----SHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp -----CCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -----CCCCceEEEeeC--CC-EEEEEeCCCceeEeeecccceeeEEeccc--ccceeeeeecCCCCeeeeeeccccceE
Confidence 122233444444 33 44444445677777665433222 12221 2233455553 3444444444455544
Q ss_pred EeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-
Q psy14257 564 ANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS- 642 (841)
Q Consensus 564 ~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~- 642 (841)
.+..+++.... +..... . | ...-.....+|.+-. +++.+
T Consensus 257 ~~~~~~~~~~~-------~~~~~~------------~---~----~~~V~~~~~~p~~~~--------------~la~~~ 296 (420)
T 4gga_A 257 WPSAPGEGGWV-------PLQTFT------------Q---H----QGAVKAVAWCPWQSN--------------VLATGG 296 (420)
T ss_dssp EESSCCSSCSC-------CSEEEC------------C---C----SSCEEEEEECTTCTT--------------EEEEEE
T ss_pred Eeeccccccce-------eeeeec------------c---c----CCceeeeeeCCCccc--------------EEEEEe
Confidence 44333321100 000000 0 0 000001122332211 12221
Q ss_pred --cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEEC-CCCeEEEEEcccCceeeeeeeeeeeeccccc
Q psy14257 643 --RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQ-EYNEVKRSSIVGGQIQLVVDAVFEFYLTPLS 719 (841)
Q Consensus 643 --~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~-~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~ 719 (841)
....|+..++..... ... +.....+..+.+.+..+.++.+.. ..++|+..++....
T Consensus 297 gs~D~~I~iwd~~t~~~--~~~--~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~----------------- 355 (420)
T 4gga_A 297 GTSDRHIRIWNVCSGAC--LSA--VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----------------- 355 (420)
T ss_dssp CTTTCEEEEEETTTTEE--EEE--EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-----------------
T ss_pred ecCCCEEEEEeCCcccc--cee--eccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc-----------------
Confidence 234455555543321 111 222345678889999999988764 56888888876544
Q ss_pred ccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc
Q psy14257 720 KRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE 772 (841)
Q Consensus 720 ~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~ 772 (841)
....+.+....+.+||+.+.++.|.-+ ...++|.+.++...
T Consensus 356 ---------~v~~l~gH~~~V~~l~~spdg~~l~S~---s~D~tvriWdv~~~ 396 (420)
T 4gga_A 356 ---------KVAELKGHTSRVLSLTMSPDGATVASA---AADETLRLWRCFEL 396 (420)
T ss_dssp ---------EEEEECCCSSCEEEEEECTTSSCEEEE---ETTTEEEEECCSCS
T ss_pred ---------EEEEEcCCCCCEEEEEEcCCCCEEEEE---ecCCeEEEEECCCC
Confidence 223344556778999999888766655 24688999988543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=91.40 E-value=16 Score=38.52 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=77.1
Q ss_pred cceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC
Q psy14257 412 GKNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
++.||+... .+.+..+++. |+..-.. .+..+.+++++ ++.||++.. .+.|+..+........... .
T Consensus 239 ~~~v~~~~~-~g~l~~~d~~tG~~~w~~---~~~~~~~~~~~--~~~l~~~~~---~g~l~~~d~~tG~~~w~~~-~--- 305 (376)
T 3q7m_A 239 NGVVFALAY-NGNLTALDLRSGQIMWKR---ELGSVNDFIVD--GNRIYLVDQ---NDRVMALTIDGGVTLWTQS-D--- 305 (376)
T ss_dssp TTEEEEECT-TSCEEEEETTTCCEEEEE---CCCCEEEEEEE--TTEEEEEET---TCCEEEEETTTCCEEEEEC-T---
T ss_pred CCEEEEEec-CcEEEEEECCCCcEEeec---cCCCCCCceEE--CCEEEEEcC---CCeEEEEECCCCcEEEeec-c---
Confidence 477887653 5678888874 5543222 23456677776 689999884 3688888875322222111 0
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEe
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~ 565 (841)
........+++. +++||+.+. .+.|+.+++. |+.+.........+ .....+.++.||+... .+.|+.++
T Consensus 306 ~~~~~~~~~~~~--~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~~~~--~~~~~~~~~~l~v~~~-~G~l~~~~ 375 (376)
T 3q7m_A 306 LLHRLLTSPVLY--NGNLVVGDS-EGYLHWINVEDGRFVAQQKVDSSGF--QTEPVAADGKLLIQAK-DGTVYSIT 375 (376)
T ss_dssp TTTSCCCCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCTTCB--CSCCEEETTEEEEEBT-TSCEEEEE
T ss_pred cCCCcccCCEEE--CCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCcc--eeCCEEECCEEEEEeC-CCEEEEEe
Confidence 011122334443 689998875 5789999965 44433332211111 1233457899999875 35666554
|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
Probab=91.21 E-value=0.13 Score=38.40 Aligned_cols=28 Identities=18% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCCC--Ccc--cCCCCcEEecCCCceecCCCCcccc
Q psy14257 140 DCHH--DCY--NTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 140 ~C~~--~C~--~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
+|.+ .|. +..++|.|.|++||. |..|+.
T Consensus 13 pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce~ 44 (53)
T 1egf_A 13 YCLNGGVCMHIESLDSYTCNCVIGYS----GDRCQT 44 (53)
T ss_dssp SSCSSCEEEEESSSSCEEEECCTTCC----SSSSCC
T ss_pred cCCCCcEEEeeCCCCCEEEECCCCCc----CCcCCc
Confidence 6754 788 889999999999996 667754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=17 Score=41.37 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=22.5
Q ss_pred eEEEEccCCEEEEEeCC---------------CCeEEEEEecCCcc
Q psy14257 353 SLVIDYNQDILYWCDSH---------------LNTVESVRVDGSER 383 (841)
Q Consensus 353 glavD~~~~~lYwaD~~---------------~~~I~~~~ldG~~~ 383 (841)
.+++|.+.+.|||...+ .+.|..++++....
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~ 284 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA 284 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE
Confidence 48999999999998642 13588888765443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.16 E-value=17 Score=38.22 Aligned_cols=266 Identities=9% Similarity=0.008 Sum_probs=139.3
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC-------CcEEEEE
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE-------HRSVIVR 485 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~-------~~~~i~~ 485 (841)
+.+.++-...+.|.+.+.........+.........+++.|...+|.... . .+.|...++... ....+..
T Consensus 76 ~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~-~--d~~i~v~~~~~~~~~~~~~~~~~~~~ 152 (354)
T 2pbi_B 76 KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG-L--DNKCSVYPLTFDKNENMAAKKKSVAM 152 (354)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES-T--TSEEEEEECCCCTTCCSGGGCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee-C--CCCEEEEEEeccccccccccceeeec
Confidence 44455555667788877654333222333345678999999755554433 3 344444444211 1222222
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe---cCeEEEEeCCCCeEE
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF---ENHVYWTDWRTNSVI 562 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~---~~~lY~td~~~~~i~ 562 (841)
.-.....+++.+.+..|+-+. ..+.|...++........+..+ -.....+++. .+.++++-...+.|.
T Consensus 153 ------h~~~v~~~~~~~~~~~l~t~s-~D~~v~lwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 153 ------HTNYLSACSFTNSDMQILTAS-GDGTCALWDVESGQLLQSFHGH--GADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp ------CSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEECC--SSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred ------cCCcEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEcCC--CCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 233456788887666666444 4678888888654333333222 1223455552 245666656667888
Q ss_pred EEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEe-
Q psy14257 563 RANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF- 641 (841)
Q Consensus 563 ~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~- 641 (841)
..+..+++....+...... .. ..+..|++ .+|+.
T Consensus 224 ~wd~~~~~~~~~~~~h~~~--------------------v~----------~v~~~p~~---------------~~l~s~ 258 (354)
T 2pbi_B 224 VWDMRSGQCVQAFETHESD--------------------VN----------SVRYYPSG---------------DAFASG 258 (354)
T ss_dssp EEETTTCCEEEEECCCSSC--------------------EE----------EEEECTTS---------------SEEEEE
T ss_pred EEECCCCcEEEEecCCCCC--------------------eE----------EEEEeCCC---------------CEEEEE
Confidence 7777666544332211000 00 01111222 11222
Q ss_pred ecCCeEEEEecCCCCccccceeecC-CCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccc
Q psy14257 642 SRPREIRGVDLEHPYYHTIPTISIP-QVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSK 720 (841)
Q Consensus 642 ~~~~~i~~~~l~~~~~~~~~~~~~~-~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~ 720 (841)
+....|+..++..... ....... ....+..++|.+....|+... ..++|+..++....
T Consensus 259 s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~------------------ 317 (354)
T 2pbi_B 259 SDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLKGS------------------ 317 (354)
T ss_dssp ETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCS------------------
T ss_pred eCCCeEEEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCc------------------
Confidence 2334555555543211 1111111 113457899998888777665 57889888875433
Q ss_pred cccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEE
Q psy14257 721 RSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVC 767 (841)
Q Consensus 721 ~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~ 767 (841)
....+......+..|++.+.++.|.-.. ..++|.+.
T Consensus 318 --------~~~~l~~h~~~v~~l~~spdg~~l~sgs---~D~~v~vW 353 (354)
T 2pbi_B 318 --------RVSILFGHENRVSTLRVSPDGTAFCSGS---WDHTLRVW 353 (354)
T ss_dssp --------EEEEECCCSSCEEEEEECTTSSCEEEEE---TTSEEEEE
T ss_pred --------eEEEEECCCCcEEEEEECCCCCEEEEEc---CCCCEEec
Confidence 2223444556788999998887666552 35667664
|
| >1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=90.80 E-value=0.15 Score=36.55 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCCC--Ccc--cCCCCcEEecCCCceecCCCCccc
Q psy14257 140 DCHH--DCY--NTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 140 ~C~~--~C~--~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
+|.+ .|. +..++|+|.|++||. |..|+
T Consensus 10 pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce 40 (45)
T 1a3p_A 10 YCLNGGVXMHIESLDSYTCNCVIGYS----GDRCQ 40 (45)
T ss_dssp CCSSSCEEEECTTTSSEEEECCTTEE----TTTTC
T ss_pred CCCCCCEEEeecCCCCEEEEcCCCCc----CCcCC
Confidence 5653 687 788999999999996 66675
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=5.3 Score=39.34 Aligned_cols=96 Identities=14% Similarity=0.041 Sum_probs=64.5
Q ss_pred ceEEEEecCCCcEEEEcc-CCc------eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-------C
Q psy14257 413 KNLYWVESNLDQIEVAKL-SGQ------FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-------E 478 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~-~G~------~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-------~ 478 (841)
-.||..+.. ++++-.+ ++. ..+.+...++.+...||++| +|.||... ++.+++.+... .
T Consensus 5 ~~l~~v~~d--~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV~----~G~Ly~~~~~t~~~~~W~~ 77 (236)
T 1tl2_A 5 SMLRGVYQD--KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGVL----NDKIYKGTPPTHDNDNWMG 77 (236)
T ss_dssp CCEEEEETT--EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEEE----TTEEEEESCCCSTTCCHHH
T ss_pred eEEEEEeCC--cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEEe----CCeEEEECCCCCCcccccc
Confidence 356666653 6666554 333 12344444577888999999 79999993 57899999732 1
Q ss_pred CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 479 HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 479 ~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
..+.|.. .....-..+.+| .++.||.+ . .+.|++.+.
T Consensus 78 s~t~IG~-----~Gw~~F~a~~fD-~~G~LYav-~-dG~iyr~~p 114 (236)
T 1tl2_A 78 RAKKIGN-----GGWNQFQFLFFD-PNGYLYAV-S-KDKLYKASP 114 (236)
T ss_dssp HCEEEEC-----SCGGGCSEEEEC-TTSCEEEE-E-TTEEEEESC
T ss_pred cccEecc-----cccccceEEEEC-CCCCEEEe-C-CCEEEEeCC
Confidence 2344443 233345789999 57999998 3 489999987
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=90.45 E-value=22 Score=38.49 Aligned_cols=243 Identities=7% Similarity=0.006 Sum_probs=119.8
Q ss_pred CCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe---cCeEEEEeCCCCeEEEEeccCCc
Q psy14257 494 AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF---ENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~---~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.....+++.+. +.| ++-...+.|...+++.......+..+ ......+++. ++.+.++-...+.|...+..++.
T Consensus 163 ~~V~~l~~~~~-~~l-~s~s~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 238 (464)
T 3v7d_B 163 GGVWALKYAHG-GIL-VSGSTDRTVRVWDIKKGCCTHVFEGH--NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238 (464)
T ss_dssp SCEEEEEECST-TEE-EEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred cCEEEEEEcCC-CEE-EEEeCCCCEEEEECCCCcEEEEECCC--CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence 44567777643 444 44445678888888765444343322 2234566664 34556665566777766655444
Q ss_pred ceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEE
Q psy14257 571 DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRG 649 (841)
Q Consensus 571 ~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~ 649 (841)
...........+..+ ..|.. ++ .++....+ ......+......+|+.+ ....|+.
T Consensus 239 ~~~~~~~~~~~~~~~-~~~~~-~~----------~~~~~~~~------------~~~~v~~~~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 239 SVPDHGEEHDYPLVF-HTPEE-NP----------YFVGVLRG------------HMASVRTVSGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp CC------CCSSEEE-SCGGG-CT----------TEEEEECC------------CSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred ccccccccCCcceEe-eccCC-Ce----------EEEEEccC------------ccceEEEEcCCCCEEEEEeCCCeEEE
Confidence 332211111111000 00100 00 00000000 000111111222334443 3556777
Q ss_pred EecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceE
Q psy14257 650 VDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQI 729 (841)
Q Consensus 650 ~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (841)
.++..... ...+ ......+..++|++..+.++... ..+.|+..++.... .
T Consensus 295 wd~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~--------------------------~ 344 (464)
T 3v7d_B 295 WDVAQMKC--LYIL-SGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGE--------------------------L 344 (464)
T ss_dssp EETTTTEE--EEEE-CCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTE--------------------------E
T ss_pred EECCCCcE--EEEe-cCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc--------------------------E
Confidence 77653321 1111 11234578999999888877665 67889998886544 2
Q ss_pred EEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEE
Q psy14257 730 QLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWS 806 (841)
Q Consensus 730 ~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~ 806 (841)
...+......+..|+++ ++.|+.. ...++|.+.++....+...... -.....+++.|...+|.-.
T Consensus 345 ~~~~~~h~~~v~~~~~~--~~~l~s~---s~dg~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS--DKFLVSA---AADGSIRGWDANDYSRKFSYHH-------TNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp EEEECCCSSCEEEEEEC--SSEEEEE---ETTSEEEEEETTTCCEEEEEEC-------TTCCCEEEEEECSSEEEEE
T ss_pred EEEEeCCCCcEEEEEEc--CCEEEEE---eCCCcEEEEECCCCceeeeecC-------CCCccEEEEEeCCCEEEEe
Confidence 22333445566777776 4555554 3568899999987655444433 2344455666654444433
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.42 E-value=33 Score=40.46 Aligned_cols=399 Identities=10% Similarity=-0.001 Sum_probs=183.2
Q ss_pred CCEEEEccCCCccccccccC---c--CCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeee----eecCCCcc
Q psy14257 328 GGIEKAGMHGENRSPLVTKN---I--QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLE----VLGSDSRV 398 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~---~--~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~----~~~~~~~~ 398 (841)
+.|.+.+......+.+.... + .....|+.|. .+.||+... .+.|.+++......+.+.... .+......
T Consensus 137 ~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lwigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 214 (781)
T 3v9f_A 137 RGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAE-DGKLYIGHV-EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVR 214 (781)
T ss_dssp SCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEE-TTEEEEEET-TTEEEEEETTTTEEEEECC--------CCSSEE
T ss_pred CCeeEEECCCCeEEeeccCcccCCCccceEEEEECC-CCCEEEEec-CCCeEEEcCCCCceEeeecCCCCcccCCCCcee
Confidence 36777776544333332111 1 1234566664 567776543 335778776655433321100 00000000
Q ss_pred ccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecC-------CCCCceeEEEcCCCCeEEEEecCCCCCeEE
Q psy14257 399 GIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG-------DMESPRAIALDPRFGLLFWTDWDSKAPRIE 471 (841)
Q Consensus 399 ~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~-------~l~~P~giavd~~~g~Ly~td~~~~~~~I~ 471 (841)
.+ ..| ..++|++... . .+.+++........+... .-...+.|+.|. .|.|++...+ ..|.
T Consensus 215 ~i------~~d-~~g~lwigt~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigt~~---~Gl~ 281 (781)
T 3v9f_A 215 CI------YKD-TNGNIWIGTS-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNKLWIATEL---NGIM 281 (781)
T ss_dssp EE------EEC-TTCCEEEEET-T-EEEEEETTTTEEEC-----------CCCCEEEEEECT-TSEEEEEESS---SCEE
T ss_pred EE------EEc-CCCCEEEEeC-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCCEEEEeCC---CCeE
Confidence 00 011 1255665543 2 567777654333222111 123567888886 4888877642 4688
Q ss_pred EecCCCCCcEEEEE-------ecccCCCC--CCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC-----CCC
Q psy14257 472 RCSMSGEHRSVIVR-------VDLLTSRG--AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN-----HDS 537 (841)
Q Consensus 472 r~~ldG~~~~~i~~-------~~~~~~~~--~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~-----~~~ 537 (841)
+.+........+.. .......+ .....|..|. ++.|++.. ..+.|..++......+.+... ...
T Consensus 282 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 359 (781)
T 3v9f_A 282 ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNNIWIGT-WGGGINFISNAPPTFHTWSYSPTQMNESS 359 (781)
T ss_dssp EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCCEEEEE-BSSCEEEECSSCCSCEEEC----CCCSSC
T ss_pred EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCCEEEEe-cCCeEEEeCCCCCcceeeccCccccccCC
Confidence 88876544332221 00000111 2346788884 56666554 346688888776544444211 111
Q ss_pred CC--cceEEEEec-CeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCce
Q psy14257 538 LT--HPFAIALFE-NHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTY 614 (841)
Q Consensus 538 l~--~P~gla~~~-~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~ 614 (841)
+. ...+|+.+. +.||+... .+.|.++++.++. .+.+. . +. .. +....
T Consensus 360 l~~~~v~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~-~~~~~----~-------~~-----~~------------~~~~v 409 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQGKLWIGTD-GGGINVFENGKRV-AIYNK----E-------NR-----EL------------LSNSV 409 (781)
T ss_dssp CSSSCEEEEEECTTSCEEEEEB-SSCEEEEETTEEE-EECC---------------------C------------CCSBE
T ss_pred CCCcceEEEEEcCCCCEEEEeC-CCcEEEEECCCCe-EEEcc----C-------CC-----CC------------CCcce
Confidence 22 345666654 77887753 3457777754321 11000 0 00 00 00111
Q ss_pred eeeCCCCceeecCCCcccccCceeEEeec-CCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeE
Q psy14257 615 KCQCPHVMKLMSDNKTCQVADSQFIIFSR-PREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEV 693 (841)
Q Consensus 615 ~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~-~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I 693 (841)
.+ +..| ....|.+++ ...+..++........... +......+.+|..|. .+.||+... +-|
T Consensus 410 ~~-------i~~d-------~~g~lWigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~-~g~lwigt~--~Gl 471 (781)
T 3v9f_A 410 LC-------SLKD-------SEGNLWFGTYLGNISYYNTRLKKFQIIEL-EKNELLDVRVFYEDK-NKKIWIGTH--AGV 471 (781)
T ss_dssp EE-------EEEC-------TTSCEEEEETTEEEEEECSSSCEEEECCS-TTTCCCCEEEEEECT-TSEEEEEET--TEE
T ss_pred EE-------EEEC-------CCCCEEEEeccCCEEEEcCCCCcEEEecc-CCCCCCeEEEEEECC-CCCEEEEEC--Cce
Confidence 11 1111 111233343 3556665543221111100 001124567888884 567776653 678
Q ss_pred EEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeC-----CCCCcceeEEeecCCcEEEEecCCCCCeEEEEe
Q psy14257 694 KRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDA-----GISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCN 768 (841)
Q Consensus 694 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~ 768 (841)
++.+..+...+ .+... ....+.+|+.|..+ +|++.. ..+-|.+.+
T Consensus 472 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt---~~~Gl~~~~ 521 (781)
T 3v9f_A 472 FVIDLASKKVI--------------------------HHYDTSNSQLLENFVRSIAQDSEG-RFWIGT---FGGGVGIYT 521 (781)
T ss_dssp EEEESSSSSCC--------------------------EEECTTTSSCSCSCEEEEEECTTC-CEEEEE---SSSCEEEEC
T ss_pred EEEeCCCCeEE--------------------------ecccCcccccccceeEEEEEcCCC-CEEEEE---cCCCEEEEe
Confidence 88887664411 11110 12457889999654 566652 224577777
Q ss_pred cCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCceEEE
Q psy14257 769 LEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV 828 (841)
Q Consensus 769 l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~~~l 828 (841)
.++...+.+.... .. .-....+|+.|+. |.|+.... . +-|.+.+.....-+.+
T Consensus 522 ~~~~~~~~~~~~~--~l-~~~~i~~i~~d~~-g~lWi~T~-~--Glv~~~d~~~~~~~~~ 574 (781)
T 3v9f_A 522 PDMQLVRKFNQYE--GF-CSNTINQIYRSSK-GQMWLATG-E--GLVCFPSARNFDYQVF 574 (781)
T ss_dssp TTCCEEEEECTTT--TC-SCSCEEEEEECTT-SCEEEEET-T--EEEEESCTTTCCCEEE
T ss_pred CCCCeEEEccCCC--CC-CCCeeEEEEECCC-CCEEEEEC-C--CceEEECCCCCcEEEc
Confidence 6654333332210 00 0245788888864 66666554 2 1226665554443333
|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
Probab=90.41 E-value=0.17 Score=34.79 Aligned_cols=30 Identities=37% Similarity=0.800 Sum_probs=22.8
Q ss_pred cccccCCCCCccC--ceeecCCCCceEEeecCCee
Q psy14257 171 YLHPCEAWGTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 171 ~~~eC~~~~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
++++|. ..+|.+ .|.+. .++|+|.|++||.
T Consensus 2 d~d~C~-~~pC~ngg~C~~~--~~~~~C~C~~G~~ 33 (39)
T 1edm_B 2 DGDQCE-SNPCLNGGSCKDD--INSYECWCPFGFE 33 (39)
T ss_dssp CCCTTT-TCCCCTTCEEEEE--TTEEEEECCTTCC
T ss_pred ccccCC-CCCCCCCCEeEcC--CCceEeECCCCCc
Confidence 456674 346653 78888 8999999999996
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=90.36 E-value=31 Score=40.02 Aligned_cols=76 Identities=8% Similarity=-0.038 Sum_probs=46.9
Q ss_pred eeEEEeccCCEEEEEeC-----------------------------------CCCeEEEEEcCCCee-EEEEcCCCCCCc
Q psy14257 497 NGLTLDYQLTRIYWIDA-----------------------------------KSDSIHTVTYDGKDH-HVVLSNHDSLTH 540 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~-----------------------------------~~~~I~~~~~dG~~~-~~i~~~~~~l~~ 540 (841)
.++++|+.++.+|+... ..+.|..+|+..... -.+..... ..
T Consensus 384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~--~~ 461 (668)
T 1kv9_A 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH--WN 461 (668)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS--CC
T ss_pred CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC--Cc
Confidence 45899999999997321 115688888754433 22221110 11
Q ss_pred ceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 541 PFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 541 P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
--.++..++.||+.+ ..+.|+.++..+|+.+-.+
T Consensus 462 ~~~~~t~gg~vf~g~-~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 462 GGTLSTAGNLVFQGT-AAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CCEEEETTTEEEEEC-TTSEEEEEETTTCCEEEEE
T ss_pred CceeEeCCCEEEEEC-CcccchhhhhhcChhheEe
Confidence 123555778899884 5678888898888765443
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.75 Score=52.62 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCCCceeEEEcCCCCeEEEEecCC----------CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEE
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDS----------KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI 511 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~----------~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~ 511 (841)
.+..|-.|+||+. |.||+.+=+. .+..++....+-...+.+... ..-...+|+++.++.+.||+.
T Consensus 474 ~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~----P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 474 MFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG----PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC----CTTCEEEEEEECTTSSEEEEE
T ss_pred CccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC----CCCccCcCeeECCCCCEEEEE
Confidence 4778999999986 6677764321 134566666653333333331 234567899999888888876
Q ss_pred eC
Q psy14257 512 DA 513 (841)
Q Consensus 512 d~ 513 (841)
-.
T Consensus 549 iQ 550 (592)
T 3zwu_A 549 IQ 550 (592)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=90.04 E-value=19 Score=37.10 Aligned_cols=131 Identities=8% Similarity=-0.044 Sum_probs=73.7
Q ss_pred EecCCCCCceeEEEcCC----CCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCCceeEEEeccC---CEEE
Q psy14257 438 LIAGDMESPRAIALDPR----FGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAWPNGLTLDYQL---TRIY 509 (841)
Q Consensus 438 l~~~~l~~P~giavd~~----~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~P~glalD~~~---~~LY 509 (841)
+.........+|+++|. ...++.+... ..|...++. +.....+.... ....-.....+++.+.. ++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~---~~v~vw~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGS---NRVTLYECHSQGEIRLLQSYV-DADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEET---TEEEEEEECGGGCEEEEEEEE-CSCTTCCEEEEEEEECTTTCCEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCC---CEEEEEEcCCCcEEEeeeecc-ccCCCCcEEEEEeccCCCCCCCEE
Confidence 34344456789999983 4455555543 466666665 33333333210 00122345778887653 3555
Q ss_pred EEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 510 w~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
++-...+.|...++........+..+ -.....|++. ++.++++-...+.|...+..+++....
T Consensus 89 ~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQCIKHYVGH--GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 153 (366)
T ss_dssp EEEETTCEEEEECTTTCCEEEEEESC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEEEchhceEeeeecCC--CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence 55556788999998754433333322 2345677774 456666656677788777766654443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=31 Score=39.19 Aligned_cols=76 Identities=9% Similarity=0.041 Sum_probs=47.4
Q ss_pred eeEEEeccCCEEEEEeC------------------------------------CCCeEEEEEcC-CCeeEEEEcCCCCCC
Q psy14257 497 NGLTLDYQLTRIYWIDA------------------------------------KSDSIHTVTYD-GKDHHVVLSNHDSLT 539 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~------------------------------------~~~~I~~~~~d-G~~~~~i~~~~~~l~ 539 (841)
.++++|+.+++||+... ..+.|..+|+. |+.+-.+........
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~ 468 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG 468 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc
Confidence 46899999999998642 23578888875 444433322211111
Q ss_pred cceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 540 HPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 540 ~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
..++..++.||+.. ..+.|+.++..+|+.+-.+
T Consensus 469 --~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 469 --GTLYTKGGLVWYAT-LDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp --BCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEE
T ss_pred --eeEEECCCEEEEEc-CCCeEEEEECCCCCEEEEE
Confidence 12344578888864 4578888898888765433
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.77 E-value=21 Score=37.17 Aligned_cols=290 Identities=14% Similarity=0.039 Sum_probs=140.5
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeC-CCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT-GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~-~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
+.+++|.+. +. +..+-..++.|...++.++.. .....+.. .......+++.+.++ |++-. ..++.
T Consensus 19 v~~l~~sp~-g~--~las~~~D~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~--------s~D~~ 84 (345)
T 3fm0_A 19 CWFLAWNPA-GT--LLASCGGDRRIRIWGTEGDSW-ICKSVLSEGHQRTVRKVAWSPCGN--YLASA--------SFDAT 84 (345)
T ss_dssp EEEEEECTT-SS--CEEEEETTSCEEEEEEETTEE-EEEEEECSSCSSCEEEEEECTTSS--EEEEE--------ETTSC
T ss_pred EEEEEECCC-CC--EEEEEcCCCeEEEEEcCCCcc-eeeeeeccccCCcEEEEEECCCCC--EEEEE--------ECCCc
Confidence 456777665 33 455556677777777765431 01122222 223455667665442 33211 23456
Q ss_pred EEEEccCCCccccc--cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEE-EEeeeeecCCCccccCCCCCC
Q psy14257 330 IEKAGMHGENRSPL--VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTV-SFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 330 I~~~~~dG~~~~~l--~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~-~~~~~~~~~~~~~~i~~~~~~ 406 (841)
|..++.+......+ ....-.....|++.+.++.|.-+ ...+.|...+++...... +..... ....+ .
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~--h~~~v-------~ 154 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC-SRDKSVWVWEVDEEDEYECVSVLNS--HTQDV-------K 154 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECTTSCEEEEEEECC--CCSCE-------E
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEE-ECCCeEEEEECCCCCCeEEEEEecC--cCCCe-------E
Confidence 66666544322211 12233445788888876655544 456778888886543322 211110 00000 0
Q ss_pred ccccc-cceEEEEecCCCcEEEEccCCceEE--EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc---
Q psy14257 407 DNLWI-GKNLYWVESNLDQIEVAKLSGQFRR--TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR--- 480 (841)
Q Consensus 407 avdw~-~~~LY~tD~~~~~I~v~~~~G~~~~--~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~--- 480 (841)
.+.|. .+.+..+-...+.|.+.++...... ..+.........|+++|...+|...... ..-+|++....+...
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D-~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD-RTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEEEECTTCTTCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC-CeEEEeccccCCCCccce
Confidence 12221 1445555556678888877654321 2233344567899999986666555433 245666654433221
Q ss_pred --------EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe------eEEEEc-CCCCCCcceEEE
Q psy14257 481 --------SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD------HHVVLS-NHDSLTHPFAIA 545 (841)
Q Consensus 481 --------~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~------~~~i~~-~~~~l~~P~gla 545 (841)
..+... ....-.....+++.+.++.|..+. ..+.|...+.+... ...... .......-..|+
T Consensus 234 ~~~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 234 CSGSDPSWKCICTL--SGFHSRTIYDIAWCQLTGALATAC-GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310 (345)
T ss_dssp CC---CEEEEEEEE--CSSCSSCEEEEEECTTTCCEEEEE-TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred eeccCCccceeEEe--cCCCCCcEEEEEEecCCCEEEEEe-CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence 111110 001123346777876666555443 45667777665421 011110 000112235566
Q ss_pred Eec-C-eEEEEeCCCCeEEEEeccC
Q psy14257 546 LFE-N-HVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 546 ~~~-~-~lY~td~~~~~i~~~~~~~ 568 (841)
+.. + .++.+-...+.|...+..+
T Consensus 311 ~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 311 WNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp ECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EeCCCceEEEEcCCCCcEEEEEecC
Confidence 642 2 4666655566666555433
|
| >1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 | Back alignment and structure |
|---|
Probab=89.42 E-value=0.31 Score=41.23 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=49.0
Q ss_pred Cccc-CCCCcEEecCCCceecCCCCccccccc-cC-CCCCccC--ceeecCCC-CceEEeecCCeeec-CCCCceEe
Q psy14257 144 DCYN-TPEGFMCVCPRDMYLQPDLITCSYLHP-CE-AWGTCSQ--DCEPSVSN-NSYKCTCHAGYELE-PDMFTCKS 213 (841)
Q Consensus 144 ~C~~-~~g~~~C~C~~Gy~l~~d~~~C~~~~e-C~-~~~~Cs~--~C~~~~~~-g~~~C~C~~G~~l~-~d~~~C~~ 213 (841)
.|.. .+|...|.|..||.. |+..|...++ |. .++.|.. .|..+ . ..-.|.|.++|... -++..|..
T Consensus 23 ~C~r~~~G~e~CrCl~gY~~--dg~~Cv~~Np~C~~nNGGCd~nAeC~~~--~~~ki~C~C~~~~~~~~~~GvfC~~ 95 (105)
T 1n1i_A 23 ACYRYLDGTEEWRCLLGFKE--VGGKCVPASITCEENNGGCAPEAECTMD--DKKEVECKCTKEGSEPLFEGVFCSS 95 (105)
T ss_dssp EEEECTTSCEEEEECTTEEE--CSSSEEECCCCTTSGGGGSCTTSEEEEC--TTSCEEEECCSTTCCEEGGGTEECC
T ss_pred CeEECCCCCEeEEEECCeec--cCCEEEECCcchhhcCCCcCCCcEeEEC--CCCEEEeECCCCCCccccceEEECC
Confidence 5666 678899999999985 7889998888 75 5678854 78776 4 67899999986422 24455544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.38 E-value=36 Score=39.37 Aligned_cols=150 Identities=9% Similarity=0.024 Sum_probs=85.6
Q ss_pred cceEEEEecCCCcEEEEccCCc-----eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 412 GKNLYWVESNLDQIEVAKLSGQ-----FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~G~-----~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
++++.++-+..+.|.+.++... .....+.........++++|...+|..... .+.|..-++..........
T Consensus 394 ~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~---Dg~v~vwd~~~~~~~~~~~- 469 (694)
T 3dm0_A 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW---DGELRLWDLAAGVSTRRFV- 469 (694)
T ss_dssp CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEEEEE-
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC---CCcEEEEECCCCcceeEEe-
Confidence 4567888777888988887532 112223334456789999998666655543 4667777765332222222
Q ss_pred cccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC-CCCcceEEEEecC---eEEEEeCCCCeEE
Q psy14257 487 DLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD-SLTHPFAIALFEN---HVYWTDWRTNSVI 562 (841)
Q Consensus 487 ~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~-~l~~P~gla~~~~---~lY~td~~~~~i~ 562 (841)
..-.....+++.+.+..|.- -...+.|...+..+.....+..... .......+++..+ .++++-...+.|.
T Consensus 470 ----~h~~~v~~~~~s~~~~~l~s-~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 470 ----GHTKDVLSVAFSLDNRQIVS-ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp ----CCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred ----CCCCCEEEEEEeCCCCEEEE-EeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 23345678889876666654 4446788888887765555543211 0111244555322 3455545556666
Q ss_pred EEeccCCc
Q psy14257 563 RANKWNGS 570 (841)
Q Consensus 563 ~~~~~~g~ 570 (841)
..+..+++
T Consensus 545 vwd~~~~~ 552 (694)
T 3dm0_A 545 VWNLSNCK 552 (694)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 66654443
|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=0.03 Score=56.89 Aligned_cols=85 Identities=7% Similarity=-0.090 Sum_probs=57.1
Q ss_pred cccCCCCCeEecC--CCCCCCCCCCCCCCCCccc----ccccccCCCC-CCCcccCCCCcEEecCCCceecCCCCccccc
Q psy14257 100 FDCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC----DEKQCLRSDC-HHDCYNTPEGFMCVCPRDMYLQPDLITCSYL 172 (841)
Q Consensus 100 ~~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C-~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~ 172 (841)
..|.++ ++|+.. +|.| +|+.||....| +||.... .| +..|+| +.+| | .+..|+..
T Consensus 38 ~~c~ng-G~C~~g~~~y~C----~Cp~Gf~G~~Ce~ni~ec~~~~-~c~s~pC~n---ggtc-----~----~G~~c~~~ 99 (267)
T 4fbr_A 38 IKSDDG-GKTLKGTMTYNG----EGPIGFRGTLSSANNYTVENQW-GGTSAPWQP---GGVW-----V----LGARDKQN 99 (267)
T ss_dssp EECSST-TSEEEEEEEETT----SCCEEEEEEECSTTEEEEEEES-SSTTSCEEE---EEEE-----E----CCCCSSCC
T ss_pred CCcCCC-CeecCCCCCeEE----eCCCCccccccccccccccccc-CcCCCcccC---CCee-----e----ccCccccc
Confidence 367777 999887 8999 99999988777 5654322 23 234554 2233 1 35567766
Q ss_pred cccCCCCCccC--ceeecCCCCceEEeecCCeeec
Q psy14257 173 HPCEAWGTCSQ--DCEPSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 173 ~eC~~~~~Cs~--~C~~~~~~g~~~C~C~~G~~l~ 205 (841)
+||.. .+|.. .|++. ..+|+|.|+.||+..
T Consensus 100 ~eC~s-~pC~ngG~C~~~--~~sy~C~C~~Gf~G~ 131 (267)
T 4fbr_A 100 IVAVS-IKSNDGGKTLTG--TTTYNGEGPIGFKSE 131 (267)
T ss_dssp EEEEE-EECSSTTSEEEE--EEEETTSCCEEEEEE
T ss_pred cccCC-CCCCCCCEEecC--CccEEeeCCCCcccc
Confidence 77742 34532 77787 889999999999854
|
| >1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A | Back alignment and structure |
|---|
Probab=89.15 E-value=0.12 Score=48.67 Aligned_cols=33 Identities=24% Similarity=0.713 Sum_probs=26.6
Q ss_pred CCC--CCcccCCCCcEEecCCCceecCCCCccccccccC
Q psy14257 140 DCH--HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176 (841)
Q Consensus 140 ~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~ 176 (841)
+|. ..|.++.++|.|.|++||. |..|+.+++|.
T Consensus 126 ~C~~~g~C~~~~~~~~c~C~~g~~----G~~Ce~~~~c~ 160 (162)
T 1g1s_A 126 SCSKQGECLETIGNYTCSCYPGFY----GPECEYVRDDD 160 (162)
T ss_dssp GGGGSEEEEECSSSEEEEECTTEE----STTSCEECC--
T ss_pred CCCCCCEEecCCCCceEeCCCCCc----CcccccCcccC
Confidence 453 3799999999999999997 67899998884
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=89.13 E-value=3.9 Score=46.67 Aligned_cols=135 Identities=13% Similarity=0.263 Sum_probs=78.5
Q ss_pred CCCCceEEEEecCCCEEEEEECC---------------------CCeEEEEEcccCceeeeeeeeeeeec---ccccccc
Q psy14257 667 QVFSPNNLNFDAANKKIYWTDQE---------------------YNEVKRSSIVGGQIQLVVDAVFEFYL---TPLSKRS 722 (841)
Q Consensus 667 ~~~~~~~v~~d~~~~~iyw~d~~---------------------~~~I~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~ 722 (841)
.+..+..++++|.++.||++-+. .+.|+|+..++......- ---++|+ .|.....
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~-f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKT-FAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSE-EEEEEEEECCCTTTSTT
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccce-eEEEEEEeccCcccccc
Confidence 35678999999999999999642 256888887654311000 0000111 1111000
Q ss_pred cccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCC-----------CCCeEEEEecC-CcceEEEEcCCCCCCCcCCC
Q psy14257 723 SIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP-----------TQSKIVVCNLE-GEYQTTILSNESNDTSTLSK 790 (841)
Q Consensus 723 ~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~-----------~~~~I~v~~l~-g~~~~~~~~~~~~~~~~l~~ 790 (841)
...+.....--...+..|-+|+||+.+ +||+.. |. .++.+-+.... |+.++.+..- .-..
T Consensus 461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G-~LwI~e-Dg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P------~gaE 532 (592)
T 3zwu_A 461 TPKGGSSNITPQNMFNSPDGLGFDKAG-RLWILT-DGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP------IGCE 532 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECTTC-CEEEEE-CCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC------TTCE
T ss_pred cccccccccCCCCCccCCcceEECCCC-CEEEEe-cCCCcccccccccccceEEEEeCCCCeEEEEEeCC------CCcc
Confidence 000000000111357899999999876 577775 43 23456666654 5555544431 0368
Q ss_pred ceEEEEeCCCCeEEEEecCC
Q psy14257 791 ISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 791 p~~iavd~~~g~lyw~d~~~ 810 (841)
..|+++.|....||..-++-
T Consensus 533 ~TG~~fspDg~tlfvniQHP 552 (592)
T 3zwu_A 533 VTGISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp EEEEEECTTSSEEEEEEEST
T ss_pred CcCeeECCCCCEEEEEEECC
Confidence 89999999999999998764
|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.13 Score=62.73 Aligned_cols=26 Identities=42% Similarity=0.965 Sum_probs=23.9
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCCCC
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHCQD 29 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C~~ 29 (841)
+||+..|+|||+.||.|+|||. +|..
T Consensus 129 ~ci~~~~~c~g~~dC~d~sde~--~C~~ 154 (913)
T 3t5o_A 129 RCIARKLECNGENDCGDNSDER--DCGR 154 (913)
T ss_dssp CEEEGGGSSSSSCCSSSSGGGT--TCSS
T ss_pred ceEccceecCCcccCCCccccc--cCCC
Confidence 6999999999999999999998 7863
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=88.54 E-value=42 Score=39.00 Aligned_cols=55 Identities=7% Similarity=-0.086 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCe-eEEEEcCCCCCCcceE--EEEecCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 516 DSIHTVTYDGKD-HHVVLSNHDSLTHPFA--IALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 516 ~~I~~~~~dG~~-~~~i~~~~~~l~~P~g--la~~~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
+.|..+|+.... +-.+.... .+.+ ++..++.+|+. ...+.++.++..+|+.+..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVS----PWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEE
T ss_pred cEEEEEeCCCCcEEeecCCCC----CCcCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeee
Confidence 578888886433 32222211 1122 34456788887 45688888998888866544
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=88.41 E-value=23 Score=35.86 Aligned_cols=225 Identities=10% Similarity=0.011 Sum_probs=105.9
Q ss_pred CCCEEEEccCCCcccccc--ccCcCCCceEEEEcc-CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCC
Q psy14257 327 DGGIEKAGMHGENRSPLV--TKNIQWPSSLVIDYN-QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC 403 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~--~~~~~~P~glavD~~-~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~ 403 (841)
++.|..+++++...+.+. ...-..-..|++.+. .+.++.+-...++|...++.......+.... .....
T Consensus 30 D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--~h~~~------ 101 (297)
T 2pm7_B 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA--VHSAS------ 101 (297)
T ss_dssp TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC--CCSSC------
T ss_pred CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee--cCCCc------
Confidence 456777776543222211 112223346666543 3455566667788888887654321111100 00000
Q ss_pred CCCcccccc---ceEEEEecCCCcEEEEccCCc--eEEEEecCCCCCceeEEEcCCC------------CeEEEEecCCC
Q psy14257 404 RPEDNLWIG---KNLYWVESNLDQIEVAKLSGQ--FRRTLIAGDMESPRAIALDPRF------------GLLFWTDWDSK 466 (841)
Q Consensus 404 ~~~avdw~~---~~LY~tD~~~~~I~v~~~~G~--~~~~l~~~~l~~P~giavd~~~------------g~Ly~td~~~~ 466 (841)
..++.|.. +.+..+-...+.|.+.++... .....+.........+++.|.. +.++.+-..
T Consensus 102 -v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~-- 178 (297)
T 2pm7_B 102 -VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-- 178 (297)
T ss_dssp -EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET--
T ss_pred -eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC--
Confidence 01233321 455556666778888887643 1112233333456778888752 334454433
Q ss_pred CCeEEEecCCCCC-cE-EEEEecccCCCCCCceeEEEeccC--CEEEEEeCCCCeEEEEEcCCCe---eEEEEcCCCCCC
Q psy14257 467 APRIERCSMSGEH-RS-VIVRVDLLTSRGAWPNGLTLDYQL--TRIYWIDAKSDSIHTVTYDGKD---HHVVLSNHDSLT 539 (841)
Q Consensus 467 ~~~I~r~~ldG~~-~~-~i~~~~~~~~~~~~P~glalD~~~--~~LYw~d~~~~~I~~~~~dG~~---~~~i~~~~~~l~ 539 (841)
.+.|...+++... .. .+... ...-.....+++.+.. +.++.+-...+.|...+++... ...++.....-.
T Consensus 179 D~~v~lwd~~~~~~~~~~~~~l---~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255 (297)
T ss_dssp TSCEEEEEEETTTTEEEEEEEE---CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred CCcEEEEEEcCCCceEEEEEEe---cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC
Confidence 3444444443322 11 11111 0223456788888754 4666666566778888776532 222321111112
Q ss_pred cceEEEEe-cCeEEEEeCCCCeEEEEe
Q psy14257 540 HPFAIALF-ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 540 ~P~gla~~-~~~lY~td~~~~~i~~~~ 565 (841)
....+++. ++.++.+-...+.|...+
T Consensus 256 ~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 23556663 344444444445554443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.10 E-value=31 Score=36.95 Aligned_cols=157 Identities=12% Similarity=0.054 Sum_probs=89.0
Q ss_pred ceEEEEecCCCcEEEEccCCc-eEEEEecC-CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQ-FRRTLIAG-DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~-~~~~l~~~-~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
+.+.++-...+.|.+.++... ...++... .......|+++|...+|+.... .+.|...++.... .+.....
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~-- 254 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT---RGIIDIWDIRFNV--LIRSWSF-- 254 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET---TSCEEEEETTTTE--EEEEEBC--
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC---CCeEEEEEcCCcc--EEEEEec--
Confidence 556666666789999998654 44444321 3457889999998666655553 3566666665322 2221100
Q ss_pred CCCCCceeEEEec---cCCEEEEEeCCCCeEEEEEcCCCe-eEEEEcCCC-----------------------CCCcceE
Q psy14257 491 SRGAWPNGLTLDY---QLTRIYWIDAKSDSIHTVTYDGKD-HHVVLSNHD-----------------------SLTHPFA 543 (841)
Q Consensus 491 ~~~~~P~glalD~---~~~~LYw~d~~~~~I~~~~~dG~~-~~~i~~~~~-----------------------~l~~P~g 543 (841)
..-.....+++.+ .+++++++-...+.|...++.... ...+..... .......
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 1112234554443 235555566666788888887443 333332110 0011245
Q ss_pred EEEecCeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 544 IALFENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 544 la~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
|++.++.++++-...+.|...+..+++....+.
T Consensus 335 l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 335 ISVSNDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp EEEETTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred EEECCceEEEecCCCCeEEEEECCCcccceEEe
Confidence 666667777777777888888877776665543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=87.85 E-value=46 Score=38.65 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=33.7
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcceEEEEecCeEEEEe
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHPFAIALFENHVYWTD 555 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P~gla~~~~~lY~td 555 (841)
.+.++...++.||+. ...+.+..++.. |..+..+.........|... -.+|+.|++-
T Consensus 480 ~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y-~~~G~~~v~~ 537 (677)
T 1kb0_A 480 NGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY-MVDGRQYVSV 537 (677)
T ss_dssp CCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEE
T ss_pred cCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeCCCCcccCCEEE-EeCCEEEEEE
Confidence 344455567888887 456889999875 56555554443333344322 1456777654
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
Probab=87.42 E-value=0.35 Score=56.20 Aligned_cols=84 Identities=24% Similarity=0.563 Sum_probs=52.9
Q ss_pred cccCCCCCeEecCCCCCCCCCCCC------CCCCCccc----ccccccC-CCCCC----CcccCCCCcEEecCCCceecC
Q psy14257 100 FDCQDVLRTCIPKALVCDGEPACF------NGEDEMFC----DEKQCLR-SDCHH----DCYNTPEGFMCVCPRDMYLQP 164 (841)
Q Consensus 100 ~~C~~~~~~Ci~~~~~Cdg~~~C~------~g~de~~C----~eC~~~~-~~C~~----~C~~~~g~~~C~C~~Gy~l~~ 164 (841)
..|.+. +.|+.. .| .|. .||.+..| .+|...+ ..|+. .|.+ ..|.|.+||.
T Consensus 482 ~~Cs~~-G~C~~G--~C----~C~~~~~~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~----g~C~C~~G~~--- 547 (687)
T 3k6s_B 482 IICSGL-GDCVCG--QC----LCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFE--- 547 (687)
T ss_dssp CGGGSS-EEEETT--EE----EECCCCSTTCCEESTTSCEESSCSCEETTEETSHHHHEEEET----TEEEECTTCC---
T ss_pred CcCCCC-CEEeCC--EE----EcCCCCCCCCCccccccccccccccCCCCcCcCCCCCCeEEC----CEEEcCCCCc---
Confidence 358877 889843 56 888 88877777 3454321 24542 5653 3899999996
Q ss_pred CCCccc---cccccCC--CCCccC--ceeecCCCCceEEeecCCeee
Q psy14257 165 DLITCS---YLHPCEA--WGTCSQ--DCEPSVSNNSYKCTCHAGYEL 204 (841)
Q Consensus 165 d~~~C~---~~~eC~~--~~~Cs~--~C~~~~~~g~~~C~C~~G~~l 204 (841)
|..|+ +.++|.. ...|+. .|.. ++|.|.+||..
T Consensus 548 -G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~------g~C~C~~Gy~G 587 (687)
T 3k6s_B 548 -GSACQCERTTEGCLNPRRVECSGRGRCRC------NVCECHSGYQL 587 (687)
T ss_dssp -STTSCSCCSSCTTBCTTCSBTSSSCCBCS------SCBCCSTTCCT
T ss_pred -CCCCccCCCCCCCCCCCCCCCCCCCcCCC------CEEECCCCCcC
Confidence 66776 2456642 235643 3432 46999999863
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.94 E-value=31 Score=35.69 Aligned_cols=160 Identities=8% Similarity=0.005 Sum_probs=85.2
Q ss_pred CCceEEEEc--cCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccc-cceEEEEecCCCcEE
Q psy14257 350 WPSSLVIDY--NQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI-GKNLYWVESNLDQIE 426 (841)
Q Consensus 350 ~P~glavD~--~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~-~~~LY~tD~~~~~I~ 426 (841)
....|++++ .++. +++-...+.|...++.......+..... ... ...+.|. .+.++.+-...+.|.
T Consensus 127 ~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~---~~~-------i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKS---DVE-------YSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp CEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCS---SCC-------CCEEEECTTSCEEEEECTTSCEE
T ss_pred CEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCC---CCc-------eEEEEECCCCCEEEEEcCCCEEE
Confidence 345677776 4444 4444567788888887655433221110 000 0112221 256666666778999
Q ss_pred EEccCCceEE-EEecC-CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcE-EEEEecccCCCCCCceeEEEec
Q psy14257 427 VAKLSGQFRR-TLIAG-DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRS-VIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 427 v~~~~G~~~~-~l~~~-~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~-~i~~~~~~~~~~~~P~glalD~ 503 (841)
+.++...... ..+.. .......|+++|...+|..+. . . .|...++...... .+.........+.. ..+++++
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~--~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 270 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D--Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDIDD 270 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S--S-BEEEEETTSSTTCBSSCCCBC-----CC-EEEEECT
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C--C-eEEEEEcCCCCcceeecccccccccccc-eEEEECC
Confidence 9998654322 22332 345678999999866666655 3 2 6666666533221 11000000001111 3599998
Q ss_pred cCCEEEEEeCCCCeEEEEEcCC
Q psy14257 504 QLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 504 ~~~~LYw~d~~~~~I~~~~~dG 525 (841)
.+..|..+....+.|...+++.
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEecCCCCcEEEEEEcc
Confidence 7777776555467788877754
|
| >1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A | Back alignment and structure |
|---|
Probab=86.90 E-value=0.47 Score=39.89 Aligned_cols=56 Identities=20% Similarity=0.496 Sum_probs=42.9
Q ss_pred Cccc-CCCCcEEecCCCceecCCCCccccc--cccC-CCCCccC--ceeecCCC-----CceEEeecCCee
Q psy14257 144 DCYN-TPEGFMCVCPRDMYLQPDLITCSYL--HPCE-AWGTCSQ--DCEPSVSN-----NSYKCTCHAGYE 203 (841)
Q Consensus 144 ~C~~-~~g~~~C~C~~Gy~l~~d~~~C~~~--~eC~-~~~~Cs~--~C~~~~~~-----g~~~C~C~~G~~ 203 (841)
.|.. .++...|.|..||.. |+..|... ..|. .++.|.. .|... . +...|.|.+||.
T Consensus 17 ~C~r~~~g~e~C~C~~gy~g--dg~~Cv~~~~~sC~~nNGGCd~nA~C~~~--~~~~~~~ki~C~C~~g~~ 83 (99)
T 1ob1_C 17 GCFRHLDEREECKCLLNYKQ--EGDKCVENPNPTCNENNGGCDADAKCTEE--DSGSNGKKITCECTKPDS 83 (99)
T ss_dssp EEECCTTSCCEEEECTTEEE--ETTEEEECSCCCSTTGGGGCCTTEEEECC--SCSSSSCCCEEEECSTTC
T ss_pred CeEEcCCCCEEEEecCCeec--CCCeEeeCCCCChhhcCCCcCCCceeEec--CCcccCCceEeEeCCCCc
Confidence 5666 468899999999985 78889877 5886 3477854 67765 3 568999999865
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.77 E-value=28 Score=35.02 Aligned_cols=73 Identities=7% Similarity=-0.085 Sum_probs=52.2
Q ss_pred CCceEEEEecCCCEEEEEEC-CCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEee
Q psy14257 669 FSPNNLNFDAANKKIYWTDQ-EYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDW 747 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw~d~-~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~ 747 (841)
..+..+.+.+..+.++.+.. ..++|+..++.... ....+.+..+.+.+||+.+
T Consensus 241 ~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--------------------------~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--------------------------KVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--------------------------EEEEECCCSSCEEEEEECT
T ss_pred eeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--------------------------EEEEEcCCCCCEEEEEEcC
Confidence 45678889999999887753 56889888876544 2233445567789999998
Q ss_pred cCCcEEEEecCCCCCeEEEEecC
Q psy14257 748 IAQNMFIAVSSPTQSKIVVCNLE 770 (841)
Q Consensus 748 ~~~~LYw~~~~~~~~~I~v~~l~ 770 (841)
.++.|.-+ ...++|.+.++.
T Consensus 295 dg~~l~S~---s~D~~v~iWd~~ 314 (318)
T 4ggc_A 295 DGATVASA---AADETLRLWRCF 314 (318)
T ss_dssp TSSCEEEE---ETTTEEEEECCS
T ss_pred CCCEEEEE---ecCCeEEEEECC
Confidence 87766554 246788888764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.60 E-value=34 Score=41.32 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=112.7
Q ss_pred CCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEc
Q psy14257 350 WPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAK 429 (841)
Q Consensus 350 ~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~ 429 (841)
....|+++++++.|.... ..+.|+..+..+........ .... ..++.|..+++.++-...+.|.+.+
T Consensus 19 ~V~~lafspdg~~lAsgs-~Dg~I~lw~~~~~~~~~~~~-----~~~~-------V~~l~fspg~~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIAT-VTGEVHIYGQQQVEVVIKLE-----DRSA-------IKEMRFVKGIYLVVINAKDTVYVLS 85 (902)
T ss_dssp CEEEEEEETTTTEEEEEE-TTSEEEEECSTTCEEEEECS-----SCCC-------EEEEEEETTTEEEEEETTCEEEEEE
T ss_pred CcEEEEECCCCCEEEEEe-CCCEEEEEeCCCcEEEEEcC-----CCCC-------EEEEEEcCCCEEEEEECcCeEEEEE
Confidence 356788888877665554 45778777766543222111 0000 0123333355444545568899988
Q ss_pred cCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe------cccCCCCCCceeEEEe
Q psy14257 430 LSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV------DLLTSRGAWPNGLTLD 502 (841)
Q Consensus 430 ~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~------~~~~~~~~~P~glalD 502 (841)
+.. +...++. .-.....++++|...+|+.... .+.|...++++.....+... ............|++.
T Consensus 86 ~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~---dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 86 LYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQ---NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp TTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEET---TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred CCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcC---CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 864 4444443 2246789999999888887764 46777777765433211110 0001223456789998
Q ss_pred ccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC----------------CCCcceEEEEe-cCeEEEEeCCCCeEEEEe
Q psy14257 503 YQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD----------------SLTHPFAIALF-ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 503 ~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~----------------~l~~P~gla~~-~~~lY~td~~~~~i~~~~ 565 (841)
+.++.++.+-...+.| ..++........+.... .-.....+++. ++.++.+-...+.|...+
T Consensus 161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 7655555555556778 88887654433332210 00123566663 455566655666777666
Q ss_pred ccCCcc
Q psy14257 566 KWNGSD 571 (841)
Q Consensus 566 ~~~g~~ 571 (841)
..+|+.
T Consensus 240 ~~~g~~ 245 (902)
T 2oaj_A 240 ANSGHM 245 (902)
T ss_dssp TTTCCE
T ss_pred CCCCcE
Confidence 655543
|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
Probab=86.58 E-value=0.24 Score=38.04 Aligned_cols=33 Identities=27% Similarity=0.780 Sum_probs=25.1
Q ss_pred ccccccccCCCCCcc----CceeecCCCCceEEeecCCee
Q psy14257 168 TCSYLHPCEAWGTCS----QDCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 168 ~C~~~~eC~~~~~Cs----~~C~~~~~~g~~~C~C~~G~~ 203 (841)
.|.++++|. ..+|. ..|.++ .++|.|.|++||.
T Consensus 7 ~~~~~d~C~-snPC~nga~gtC~~~--~g~y~C~C~~Gy~ 43 (61)
T 2k2s_B 7 LSETPAACS-SNPCGPEAAGTCKET--NSGYICRCNQGYR 43 (61)
T ss_dssp CTTSCCHHH-HCSSCSSSCCEEEEC--SSEEEEECCTTEE
T ss_pred hcCCCCcCc-CCCCcCCCccccccC--CCceEeECCCCCc
Confidence 355667774 34564 368998 9999999999998
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=51 Score=37.64 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.0
Q ss_pred CceeEEEcCCCCeEEEEe
Q psy14257 445 SPRAIALDPRFGLLFWTD 462 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td 462 (841)
+..++|+||.++.+|+..
T Consensus 394 ~w~~~a~dp~~~~~yv~~ 411 (599)
T 1w6s_A 394 NQGHDSYDPKRELFFMGI 411 (599)
T ss_dssp CSCBCEEETTTTEEEEEE
T ss_pred CCCCccCCCCCCEEEEec
Confidence 446789999999999975
|
| >1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A | Back alignment and structure |
|---|
Probab=85.99 E-value=0.31 Score=35.00 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=20.1
Q ss_pred CCCCC-CcccCC--CCcEEecCCCceecCCCCccc
Q psy14257 139 SDCHH-DCYNTP--EGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 139 ~~C~~-~C~~~~--g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
.+|.+ .|.... ++|.|.|++||. |..|+
T Consensus 12 ~pC~nG~C~~~~~~~~~~C~C~~Gyt----G~~Ce 42 (46)
T 1k36_A 12 GYCLHGQCIYLVDMSQNYCRCEVGYT----GVRCE 42 (46)
T ss_dssp SSCSSEEEEEETTTTEEEEEECTTCS----STTSC
T ss_pred CCCCCCEeeccCCCCCEEEECCCCCc----cCCCC
Confidence 35644 677643 689999999996 55665
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=85.81 E-value=32 Score=34.77 Aligned_cols=242 Identities=10% Similarity=0.018 Sum_probs=111.1
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeec-CceeEEEeeecCCCCCCCCCC
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIG-KNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~-~~~y~~~td~~~~~~~~~~~~ 329 (841)
+.++.|++. ++ +..+-..++.|...++.++...... .+...-.....+++.+.. ++..+ + ...++.
T Consensus 12 V~~~~~s~~-g~--~las~s~D~~v~iw~~~~~~~~~~~-~l~gH~~~V~~v~~s~~~~g~~l~--s-------~s~D~~ 78 (297)
T 2pm7_B 12 IHDAVMDYY-GK--RMATCSSDKTIKIFEVEGETHKLID-TLTGHEGPVWRVDWAHPKFGTILA--S-------CSYDGK 78 (297)
T ss_dssp EEEEEECTT-SS--EEEEEETTSCEEEEEBCSSCBCCCE-EECCCSSCEEEEEECCGGGCSEEE--E-------EETTTE
T ss_pred eEEEEECCC-CC--EEEEEeCCCEEEEEecCCCCcEEEE-EEccccCCeEEEEecCCCcCCEEE--E-------EcCCCE
Confidence 345555544 33 4455556677777666543211111 222112223344443211 12222 1 224567
Q ss_pred EEEEccCCCcccccc--ccCcCCCceEEEEccC-CEEEEEeCCCCeEEEEEecCCcc--EEEEeeeeecCCCccccCCCC
Q psy14257 330 IEKAGMHGENRSPLV--TKNIQWPSSLVIDYNQ-DILYWCDSHLNTVESVRVDGSER--TVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 330 I~~~~~dG~~~~~l~--~~~~~~P~glavD~~~-~~lYwaD~~~~~I~~~~ldG~~~--~~~~~~~~~~~~~~~~i~~~~ 404 (841)
|..+++.......+. ...-.....+++.+.. +.++.+-...+.|...++..... ...+.. ....+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~----h~~~v------ 148 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA----HAIGV------ 148 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC----CSSCE------
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec----ccCcc------
Confidence 888877643222221 1122345677887752 34445555667888888764421 111110 00000
Q ss_pred CCccccc--------------cceEEEEecCCCcEEEEccCCce----EEEEecCCCCCceeEEEcCCC--CeEEEEecC
Q psy14257 405 PEDNLWI--------------GKNLYWVESNLDQIEVAKLSGQF----RRTLIAGDMESPRAIALDPRF--GLLFWTDWD 464 (841)
Q Consensus 405 ~~avdw~--------------~~~LY~tD~~~~~I~v~~~~G~~----~~~l~~~~l~~P~giavd~~~--g~Ly~td~~ 464 (841)
..+.|. .++++++-...+.|.+.++.... ....+.......++|+++|.. +.++.+-..
T Consensus 149 -~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 149 -NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp -EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred -ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence 011111 13566776677888888876422 222233344567899999974 455555433
Q ss_pred CCCCeEEEecCCCCC---cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 465 SKAPRIERCSMSGEH---RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 465 ~~~~~I~r~~ldG~~---~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
.+.|..-+++... ...+... ...-.....+++.+.+..|..+.. .+.|...+
T Consensus 228 --D~~v~iWd~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~las~~~-D~~v~lw~ 282 (297)
T 2pm7_B 228 --DRTCIIWTQDNEQGPWKKTLLKE---EKFPDVLWRASWSLSGNVLALSGG-DNKVTLWK 282 (297)
T ss_dssp --TSCEEEEEESSTTSCCEEEESSS---SCCSSCEEEEEECSSSCCEEEEET-TSCEEEEE
T ss_pred --CCcEEEEEeCCCCCccceeeeec---ccCCCcEEEEEECCCCCEEEEEcC-CCcEEEEE
Confidence 3444444443321 1122110 011223456778766555544433 34444443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.71 E-value=36 Score=35.30 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=77.2
Q ss_pred ceEEEEecCCCcEEEEccCCceE--E-EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEeccc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFR--R-TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~--~-~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~ 489 (841)
+++..+-...+.|.+.++++... . .+..........|+++|...+|...... ..-+|+.. +......+....
T Consensus 28 g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-~~v~iw~~--~~~~~~~~~~~~-- 102 (345)
T 3fm0_A 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-ATTCIWKK--NQDDFECVTTLE-- 102 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-SCEEEEEE--CCC-EEEEEEEC--
T ss_pred CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-CcEEEEEc--cCCCeEEEEEcc--
Confidence 45555656677888888876532 2 2223344567899999987777665543 23344443 333222222210
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee-EE--EEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEe
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH-HV--VLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~-~~--i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~ 565 (841)
..-.....+++.+.+..|. +-...+.|...+++.... .. .+..+ ......+++. ++.++.+-...+.|...+
T Consensus 103 -~h~~~v~~v~~sp~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 103 -GHENEVKSVAWAPSGNLLA-TCSRDKSVWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp -CCSSCEEEEEECTTSSEEE-EEETTSCEEEEEECTTSCEEEEEEECCC--CSCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred -CCCCCceEEEEeCCCCEEE-EEECCCeEEEEECCCCCCeEEEEEecCc--CCCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 2334567899987655555 444467788888765422 21 22221 1223456653 344444444455555555
Q ss_pred cc
Q psy14257 566 KW 567 (841)
Q Consensus 566 ~~ 567 (841)
..
T Consensus 179 ~~ 180 (345)
T 3fm0_A 179 EE 180 (345)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=85.68 E-value=36 Score=35.22 Aligned_cols=108 Identities=9% Similarity=0.055 Sum_probs=64.8
Q ss_pred ceEEEEecCCCcEEEEccCCc-------eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-CCcEEEE
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQ-------FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-EHRSVIV 484 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~-------~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-~~~~~i~ 484 (841)
+.+.++-...+.|.+.++... .....+.........|+++|...+|+-... .+.|..-++.. .....+
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~---D~~v~lwd~~~~~~~~~~- 114 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW---DKTLRLWDLRTGTTYKRF- 114 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET---TSEEEEEETTSSCEEEEE-
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCcEEEEE-
Confidence 556666666778888777532 112223334455688999987666654443 35666666643 322222
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEE
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~ 530 (841)
. ..-.....+++.+.+..|+-+. ..+.|...++.+.....
T Consensus 115 ~-----~h~~~v~~v~~sp~~~~l~s~~-~d~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 115 V-----GHQSEVYSVAFSPDNRQILSAG-AEREIKLWNILGECKFS 154 (343)
T ss_dssp E-----CCCSCEEEEEECSSTTEEEEEE-TTSCEEEEESSSCEEEE
T ss_pred c-----CCCCcEEEEEECCCCCEEEEEc-CCCEEEEEeccCCceee
Confidence 2 2334567899987766666544 46788888887654433
|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.57 E-value=0.65 Score=34.77 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=22.9
Q ss_pred cccccCCCCCccC--ce-----eecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 171 YLHPCEAWGTCSQ--DC-----EPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 171 ~~~eC~~~~~Cs~--~C-----~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
+++||. ..+|.+ .| .+. .++|.|.|++||. +..|..
T Consensus 7 ~~~eC~-s~pC~NgGtC~~~~~~d~--~~~y~C~C~~g~~----G~~CE~ 49 (55)
T 3u7u_G 7 KCAEKE-KTFCVNGGECFMVKDLSN--PSRYLCKCPNEFT----GDRCQN 49 (55)
T ss_dssp ECCSTT-TTTSCTTCEEEEECCC----CCCEEEEECTTEE----STTSCE
T ss_pred cCCCCc-CCCCCCCCCcCCCCccCC--CCCEeEeCCCCCc----CCCcCc
Confidence 456663 345643 56 344 6899999999997 456643
|
| >3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D | Back alignment and structure |
|---|
Probab=85.39 E-value=0.11 Score=38.51 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=26.5
Q ss_pred cEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEeecCCee
Q psy14257 152 FMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 152 ~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~ 203 (841)
+.|.|++||. .++|...+.|...-... .++|.|.|++||.
T Consensus 3 ~~C~C~~g~~----------~~pC~NGGtC~~~~~~~--~~~y~C~C~~Gf~ 42 (52)
T 3ca7_A 3 PTYKCPETFD----------AWYCLNDAHCFAVKIAD--LPVYSCECAIGFM 42 (52)
T ss_dssp CCBCCCHHHH----------HHTSCTTCEEEEEEETT--EEEEEEECCTTEE
T ss_pred eeeECCCCCc----------CCcCCCCCEEecCccCC--CCCEEEECCCCCc
Confidence 4689999986 23565555553211112 4679999999997
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=85.32 E-value=40 Score=35.43 Aligned_cols=199 Identities=11% Similarity=0.023 Sum_probs=103.6
Q ss_pred CceEEEEccCCEEEEEeC-CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc-ceEEEEecCCCcEEEE
Q psy14257 351 PSSLVIDYNQDILYWCDS-HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG-KNLYWVESNLDQIEVA 428 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~-~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~-~~LY~tD~~~~~I~v~ 428 (841)
...+++.++++.|.++-. ..+.|+..++........+... .. ..+++|.. +++..+-. .+.+.+.
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-----~~-------V~~v~fspdg~~l~s~s-~~~~~~~ 202 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-----GE-------VKDLHFSTDGKVVAYIT-GSSLEVI 202 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-----SC-------CCEEEECTTSSEEEEEC-SSCEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-----Cc-------eEEEEEccCCceEEecc-ceeEEEE
Confidence 456888888888877765 4567877777654433222110 00 01222221 33333333 3445554
Q ss_pred c-cCCceEEEEec-CCCCCceeEEEcCCCCeEEEEecCC-CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccC
Q psy14257 429 K-LSGQFRRTLIA-GDMESPRAIALDPRFGLLFWTDWDS-KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQL 505 (841)
Q Consensus 429 ~-~~G~~~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~-~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~ 505 (841)
. .+|........ ..-...+.+++.|.+.+|..+.... ....|...++.......+.... ........+.|++.+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 203 STVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ-VTNRFKGITSMDVDMKG 281 (365)
T ss_dssp ETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE-EESSCSCEEEEEECTTS
T ss_pred EeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee-ecCCCCCeEeEEECCCC
Confidence 4 44554433222 1223457899999866665554331 1123444444333222211100 00234456789999766
Q ss_pred CEEEEEeCCCCeEEEEEcCCC-eeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEec
Q psy14257 506 TRIYWIDAKSDSIHTVTYDGK-DHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 506 ~~LYw~d~~~~~I~~~~~dG~-~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~ 566 (841)
..|..+. ..+.|...++... ...++...+ -....+|++. ++.+.++-...+.|+..+.
T Consensus 282 ~~lasgs-~D~~V~iwd~~~~~~~~~~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 282 ELAVLAS-NDNSIALVKLKDLSMSKIFKQAH--SFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp CEEEEEE-TTSCEEEEETTTTEEEEEETTSS--SSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred CceEEEc-CCCEEEEEECCCCcEEEEecCcc--cCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 6555444 4578999988654 344444333 2335678874 5667777666677766553
|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
Probab=84.59 E-value=0.61 Score=34.57 Aligned_cols=37 Identities=32% Similarity=0.704 Sum_probs=25.1
Q ss_pred cccccCCC--CCccC--cee--ecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 171 YLHPCEAW--GTCSQ--DCE--PSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 171 ~~~eC~~~--~~Cs~--~C~--~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
++++|... .+|.+ .|. +. .++|.|.|++||. +..|..
T Consensus 2 ~i~~C~~~~~~pC~ngg~C~~~~~--~~~~~C~C~~G~~----G~~Ce~ 44 (53)
T 1egf_A 2 SYPGCPSSYDGYCLNGGVCMHIES--LDSYTCNCVIGYS----GDRCQT 44 (53)
T ss_dssp EECCCCTTSSCSSCSSCEEEEESS--SSCEEEECCTTCC----SSSSCC
T ss_pred CcccCCCCCCCcCCCCcEEEeeCC--CCCEEEECCCCCc----CCcCCc
Confidence 45566422 36654 687 66 8899999999996 455643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=84.26 E-value=48 Score=35.53 Aligned_cols=145 Identities=9% Similarity=-0.020 Sum_probs=75.2
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
++.+++-...+.|.+.++........+.........++++ ..+|+... . .+.|...++.......... ..
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg~-~--dg~i~vwd~~~~~~~~~~~-----~h 212 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITGS-S--DSTVRVWDVNTGEMLNTLI-----HH 212 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--SSEEEEEE-T--TSCEEEEESSSCCEEEEEC-----CC
T ss_pred CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC--CCEEEEEc-C--CCeEEEEECCCCcEEEEEc-----CC
Confidence 4445555566788888876443333333333455666663 34554444 3 4667777765433222221 22
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeE---EEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCC
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHH---VVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~---~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g 569 (841)
-.....++++ .+.|+ +-...+.|...++...... .....+ ......+++.+.+|+.+. ..+.|...+..++
T Consensus 213 ~~~v~~l~~~--~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~ 286 (435)
T 1p22_A 213 CEAVLHLRFN--NGMMV-TCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDFDDKYIVSAS-GDRTIKVWNTSTC 286 (435)
T ss_dssp CSCEEEEECC--TTEEE-EEETTSCEEEEECSSSSCCEEEEEECCC--SSCEEEEEEETTEEEEEE-TTSEEEEEETTTC
T ss_pred CCcEEEEEEc--CCEEE-EeeCCCcEEEEeCCCCCCceeeeEecCC--CCcEEEEEeCCCEEEEEe-CCCeEEEEECCcC
Confidence 2334455554 45444 4445678888888754322 222222 223356666555555554 4567777776655
Q ss_pred cceE
Q psy14257 570 SDVT 573 (841)
Q Consensus 570 ~~~~ 573 (841)
+...
T Consensus 287 ~~~~ 290 (435)
T 1p22_A 287 EFVR 290 (435)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 4433
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=84.26 E-value=20 Score=39.14 Aligned_cols=112 Identities=6% Similarity=-0.057 Sum_probs=67.3
Q ss_pred cceEEE---EecCCCcEEEEccCCc------e-----EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC
Q psy14257 412 GKNLYW---VESNLDQIEVAKLSGQ------F-----RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG 477 (841)
Q Consensus 412 ~~~LY~---tD~~~~~I~v~~~~G~------~-----~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG 477 (841)
+..|++ +-...+.|.+.++... . ...+....-....+|+++|..+.++.+-.. .+.|...++..
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~--Dg~v~iwD~~~ 181 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA--DGSIAVLQVTE 181 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET--TSCEEEEEESS
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC--CCeEEEEEcCC
Confidence 355655 5555678888876532 1 011122223467899999986666666544 45666666654
Q ss_pred CCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEE
Q psy14257 478 EHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVV 531 (841)
Q Consensus 478 ~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i 531 (841)
.. ..+... ..-..+..+++.+.+..|+.+. ..+.|...++.+.....+
T Consensus 182 ~~-~~~~~~----~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 182 TV-KVCATL----PSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKKVI 229 (434)
T ss_dssp SE-EEEEEE----CGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEEEE
T ss_pred Cc-ceeecc----CCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccccc
Confidence 32 222221 1234578899998877777665 467899999986655544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=83.66 E-value=50 Score=35.24 Aligned_cols=149 Identities=7% Similarity=-0.036 Sum_probs=84.3
Q ss_pred ceEEEEecCCCcEEEEccCCce----EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQF----RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~----~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
+.+..+-...+.|.+.+..... ..............+++.|..+.++.+-.+.....|...++........+.
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--- 318 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--- 318 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE---
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec---
Confidence 3344444445566665553211 001112223455788999888877776544335667776765433333332
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeC-CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEec
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDA-KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~-~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~ 566 (841)
.-..+..+.+.+..+.|+.+-. ..+.|...++........+.++ -..-..|++. ++.+.+|-...+.|...+.
T Consensus 319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 2345678888888888887654 4578888888654433333332 2334677774 4566666656677766665
Q ss_pred cCC
Q psy14257 567 WNG 569 (841)
Q Consensus 567 ~~g 569 (841)
+..
T Consensus 394 ~~~ 396 (420)
T 4gga_A 394 FEL 396 (420)
T ss_dssp SCS
T ss_pred CCC
Confidence 443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.27 E-value=52 Score=35.11 Aligned_cols=208 Identities=12% Similarity=0.002 Sum_probs=104.5
Q ss_pred cCCCceEEEEccCCEEEEEeCCCCeEEEEEecC---Cc-c--EEEEeeeeecCCCccccCCCCCCccccc-cceEEEEec
Q psy14257 348 IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDG---SE-R--TVSFNLEVLGSDSRVGIPNCRPEDNLWI-GKNLYWVES 420 (841)
Q Consensus 348 ~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG---~~-~--~~~~~~~~~~~~~~~~i~~~~~~avdw~-~~~LY~tD~ 420 (841)
-.....|++.+..+.++++-...+.|...++.. .. . ...+. .... ..++.|. .+.++++-.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-----h~~~-------v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-----CSST-------VTQITMIPNFDAFAVSS 130 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-----CSSC-------EEEEEECTTSSEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-----CCCC-------EEEEEEeCCCCEEEEEe
Confidence 345678888883344455555778888888754 21 1 11111 0000 0122222 145555555
Q ss_pred CCCcEEEEcc----CCceEEEEecC-----------CCCCceeEE--EcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 421 NLDQIEVAKL----SGQFRRTLIAG-----------DMESPRAIA--LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 421 ~~~~I~v~~~----~G~~~~~l~~~-----------~l~~P~gia--vd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
..+.|.+.++ .|...+.+... .-.....++ ..+...+|+... . .+.|...++........
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT-N--LSRVIIFDIRTLERLQI 207 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE-T--TSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe-C--CCeEEEEeCCCCeeeEE
Confidence 6678888777 34433322211 112223333 334434444433 3 46787777754443333
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEc-CCCCCCcceEEEEe-----cCeEEEEeCC
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLS-NHDSLTHPFAIALF-----ENHVYWTDWR 557 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~-~~~~l~~P~gla~~-----~~~lY~td~~ 557 (841)
.... ..-.....+++++.+..|+.+. ..+.|...++.......... .+ -.....|++. ++.+.++-..
T Consensus 208 ~~~~---~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 208 IENS---PRHGAVSSICIDEECCVLILGT-TRGIIDIWDIRFNVLIRSWSFGD--HAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EECC---GGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEEBCTT--CEEEEEEEECTTTCTTEEEEEEEST
T ss_pred EccC---CCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcCCccEEEEEecCC--CCceEEEEeccccCCCccEEEEEcC
Confidence 3310 0234678899987655555444 46788888887543322222 11 1112344332 2445556556
Q ss_pred CCeEEEEeccCCcceEEEe
Q psy14257 558 TNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 558 ~~~i~~~~~~~g~~~~~i~ 576 (841)
.+.|...+..+++....+.
T Consensus 282 dg~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp TEEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEcCCCcEEEEEE
Confidence 6777777776666554443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=83.05 E-value=49 Score=34.65 Aligned_cols=144 Identities=10% Similarity=0.031 Sum_probs=79.4
Q ss_pred ceEEEEecCCCcEEEEccC-CceEEEEecCCC-------CCc--eeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcE
Q psy14257 413 KNLYWVESNLDQIEVAKLS-GQFRRTLIAGDM-------ESP--RAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRS 481 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l-------~~P--~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~ 481 (841)
+.||++.. .+.|..++.. |+.+-..-.... ..+ ..++++ ++.||+... .+.|+..+.+ |+.+.
T Consensus 54 ~~v~~~~~-~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~---~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 54 NVVYAADR-AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--GGHVYIGSE---KAQVYALNTSDGTVAW 127 (376)
T ss_dssp TEEEEECT-TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--TTEEEEEET---TSEEEEEETTTCCEEE
T ss_pred CEEEEEcC-CCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--CCEEEEEcC---CCEEEEEECCCCCEEE
Confidence 78888764 4578888874 654422221110 111 334554 688998874 3689999875 55433
Q ss_pred EEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc-CCCeeEEEEcCCCCC--CcceEEEEecCeEEEEeCCC
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY-DGKDHHVVLSNHDSL--THPFAIALFENHVYWTDWRT 558 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~-dG~~~~~i~~~~~~l--~~P~gla~~~~~lY~td~~~ 558 (841)
.. .. . ..+ ....+++ +++||+... .+.|..++. +|..+-........+ ......++.++.||+.. ..
T Consensus 128 ~~-~~--~-~~~--~~~p~~~--~~~v~v~~~-~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~-~~ 197 (376)
T 3q7m_A 128 QT-KV--A-GEA--LSRPVVS--DGLVLIHTS-NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGG-DN 197 (376)
T ss_dssp EE-EC--S-SCC--CSCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECC-TT
T ss_pred EE-eC--C-Cce--EcCCEEE--CCEEEEEcC-CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEc-CC
Confidence 22 21 0 111 1122343 578887653 568999997 465554443221111 00123455678888864 35
Q ss_pred CeEEEEeccCCcce
Q psy14257 559 NSVIRANKWNGSDV 572 (841)
Q Consensus 559 ~~i~~~~~~~g~~~ 572 (841)
+.|+.++..+|+..
T Consensus 198 g~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 198 GRVSAVLMEQGQMI 211 (376)
T ss_dssp TEEEEEETTTCCEE
T ss_pred CEEEEEECCCCcEE
Confidence 68888888777654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=82.12 E-value=47 Score=33.84 Aligned_cols=242 Identities=7% Similarity=-0.041 Sum_probs=115.0
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeee-cCceeEEEeeecCCCCCCCCCC
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWI-GKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~-~~~~y~~~td~~~~~~~~~~~~ 329 (841)
+.+++|.+. +. +..+-..++.|...++..+.. .....+...-.....+++.+. .++..+ + ...++.
T Consensus 16 V~~v~~s~~-g~--~lasgs~D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~~~l~--s-------~s~D~~ 82 (316)
T 3bg1_A 16 IHDAQMDYY-GT--RLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYGNILA--S-------CSYDRK 82 (316)
T ss_dssp EEEEEECGG-GC--EEEEEETTTEEEEEEEETTEE-EEEEEEECCSSCEEEEEECCGGGSSCEE--E-------EETTSC
T ss_pred EEEeeEcCC-CC--EEEEEeCCCeEEEEEecCCCc-EEEEEEcCCCccEEEEEeCCCCCCCEEE--E-------EECCCE
Confidence 445666554 23 455556677777777665421 011122222223444555321 112222 1 224567
Q ss_pred EEEEccCCCccccc--cccCcCCCceEEEEccC-CEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 330 IEKAGMHGENRSPL--VTKNIQWPSSLVIDYNQ-DILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 330 I~~~~~dG~~~~~l--~~~~~~~P~glavD~~~-~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
|..+++.......+ ....-.....|++.+.. +.++.+-...+.|+..++.+.....+.... .+.... ..
T Consensus 83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~-~~h~~~-------v~ 154 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-NAHTIG-------CN 154 (316)
T ss_dssp EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT-TSSSSC-------BC
T ss_pred EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee-ccccCC-------cc
Confidence 88887754322211 11233456788888763 556666677788888887764322110000 000000 00
Q ss_pred cccccc------------------ceEEEEecCCCcEEEEccCCc--e-EEEEecCCCCCceeEEEcCCC---CeEEEEe
Q psy14257 407 DNLWIG------------------KNLYWVESNLDQIEVAKLSGQ--F-RRTLIAGDMESPRAIALDPRF---GLLFWTD 462 (841)
Q Consensus 407 avdw~~------------------~~LY~tD~~~~~I~v~~~~G~--~-~~~l~~~~l~~P~giavd~~~---g~Ly~td 462 (841)
++.|.. ++++.+-...+.|.+.++... . ....+.......+++++.|.. +.++.+-
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 111111 345666666778888877643 1 112222333456899999874 2344443
Q ss_pred cCCCCCeEEEecCCCC----C-cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 463 WDSKAPRIERCSMSGE----H-RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 463 ~~~~~~~I~r~~ldG~----~-~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
.. .+.|..-+++.. . ...+.. .-.....+++.+.+..|..+. ..+.|...+
T Consensus 235 s~--D~~v~iw~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp~g~~las~~-~D~~v~lw~ 290 (316)
T 3bg1_A 235 SQ--DGRVFIWTCDDASSNTWSPKLLHK------FNDVVWHVSWSITANILAVSG-GDNKVTLWK 290 (316)
T ss_dssp ET--TCEEEEEECSSTTCCCCBCCEEEE------CSSCEEEEEECTTTCCEEEEE-SSSCEEEEE
T ss_pred cC--CCeEEEEEccCccccchhhhhhhc------CCCcEEEEEEcCCCCEEEEEc-CCCeEEEEE
Confidence 33 355555555431 1 122222 123456778876555554433 234444444
|
| >1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=82.01 E-value=0.48 Score=49.15 Aligned_cols=31 Identities=32% Similarity=0.724 Sum_probs=28.2
Q ss_pred CCCCCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 140 DCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 140 ~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
.|++.|.|+.|++.|.|.+||.|..+++.|.
T Consensus 132 ~c~~~C~n~~g~~~csC~~Gy~L~~d~~~C~ 162 (286)
T 1nt0_A 132 PCDHYCHXYLGGYYCSCRVGYILHQNKHTCS 162 (286)
T ss_dssp CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred cCCCccccccCceEeecCCCceeccCCCCcc
Confidence 5999999999999999999999988877775
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=81.91 E-value=56 Score=34.54 Aligned_cols=142 Identities=9% Similarity=0.007 Sum_probs=72.9
Q ss_pred ceEEEEecCCCcEEEEccCCc-eEEEEe------cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc-----
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQ-FRRTLI------AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR----- 480 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~-~~~~l~------~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~----- 480 (841)
++++.+-...+.|.+.++... ....+. .........|+++|...+|+.... .+.|...++.....
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL---DRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET---TSEEEEEEC----------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC---CCEEEEEECCCCCCccccc
Confidence 555556556677777776543 232321 112345678999988666655443 35565555532111
Q ss_pred -------EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec-----
Q psy14257 481 -------SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE----- 548 (841)
Q Consensus 481 -------~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~----- 548 (841)
..... ..-.....+++.+.+..|+ +-...+.|...++........+..+ -.....+++..
T Consensus 296 ~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~-sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~~v~~~~~~~~~ 367 (393)
T 1erj_A 296 TPNSGTCEVTYI-----GHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGH--RNSVISVAVANGSSLG 367 (393)
T ss_dssp -----CEEEEEE-----CCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECSSCTTC
T ss_pred CCCCCcceEEEe-----cccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEECCC--CCCEEEEEecCCcCcC
Confidence 01111 1223456788876555554 4445678888887654433333332 12335566542
Q ss_pred --CeEEEEeCCCCeEEEEe
Q psy14257 549 --NHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 549 --~~lY~td~~~~~i~~~~ 565 (841)
+.++++-...+.|...+
T Consensus 368 p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 368 PEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp TTCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEECCCCcEEECc
Confidence 45566655555554443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=81.82 E-value=18 Score=39.52 Aligned_cols=134 Identities=7% Similarity=0.023 Sum_probs=80.3
Q ss_pred CCceEEEEecCCCEEEE---EECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEE
Q psy14257 669 FSPNNLNFDAANKKIYW---TDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAI 745 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw---~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAv 745 (841)
..+.+|+|++..+.|++ +-...++|+..++....... .. .. .++ ....+....-..+.+|++
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~-~~-~~----~~~---------~~~~~~~~h~~~V~~v~~ 157 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA-KQ-QK----RPF---------AYHKLLKDAGGMVIDMKW 157 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT-CS-SC----CCS---------EEEECCCSGGGSEEEEEE
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC-cC-Cc----cee---------eeeeccCCCCCceEEEEE
Confidence 35789999999998887 44456788888775431000 00 00 000 001122223456888999
Q ss_pred eecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCce
Q psy14257 746 DWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR 825 (841)
Q Consensus 746 D~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~ 825 (841)
.+..++++.+- ...++|.+.++........... .-..+.+++.+|...+|+-..... +|...+++|...
T Consensus 158 ~p~~~~~las~--s~Dg~v~iwD~~~~~~~~~~~~------~~~~v~~v~wspdg~~lasgs~dg---~v~iwd~~~~~~ 226 (434)
T 2oit_A 158 NPTVPSMVAVC--LADGSIAVLQVTETVKVCATLP------STVAVTSVCWSPKGKQLAVGKQNG---TVVQYLPTLQEK 226 (434)
T ss_dssp CSSCTTEEEEE--ETTSCEEEEEESSSEEEEEEEC------GGGCEEEEEECTTSSCEEEEETTS---CEEEECTTCCEE
T ss_pred CCCCCCEEEEE--ECCCeEEEEEcCCCcceeeccC------CCCceeEEEEcCCCCEEEEEcCCC---cEEEEccCCccc
Confidence 88867777773 3578899999876533211111 025789999999866666555433 577777776554
Q ss_pred EEE
Q psy14257 826 ETV 828 (841)
Q Consensus 826 ~~l 828 (841)
..+
T Consensus 227 ~~~ 229 (434)
T 2oit_A 227 KVI 229 (434)
T ss_dssp EEE
T ss_pred ccc
Confidence 444
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.62 E-value=51 Score=33.86 Aligned_cols=151 Identities=10% Similarity=0.028 Sum_probs=67.8
Q ss_pred ceEEEEecCCCcEEEEccC-C-c--eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLS-G-Q--FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~-G-~--~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
+++..+-...+.|.+.+++ + . .....+.........|+++|...+|.-.... ..-+|+... ....+.+....
T Consensus 119 g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-~~i~iW~~~--~~~~~~~~~~~- 194 (330)
T 2hes_X 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-DTVRIWKDY--DDDWECVAVLN- 194 (330)
T ss_dssp SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT-SCEEEEEEE--TTEEEEEEEEC-
T ss_pred CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC-CeEEEEECC--CCCeeEEEEcc-
Confidence 3444444455667777663 2 1 1112233334567889999876655544433 233444332 22112221110
Q ss_pred cCCCCCCceeEEEeccC-CEEEEEeCCCCeEEEEEcCCCe-----e-EEEEcCCC-CCCcceEEEEecCeEEEEeCCCCe
Q psy14257 489 LTSRGAWPNGLTLDYQL-TRIYWIDAKSDSIHTVTYDGKD-----H-HVVLSNHD-SLTHPFAIALFENHVYWTDWRTNS 560 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~-~~LYw~d~~~~~I~~~~~dG~~-----~-~~i~~~~~-~l~~P~gla~~~~~lY~td~~~~~ 560 (841)
..-.....+++.+.. +.+..+-...+.|...++.+.. . ..+..... .-...+.+++..+.++.+-...+.
T Consensus 195 --~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~ 272 (330)
T 2hes_X 195 --GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGV 272 (330)
T ss_dssp --CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSC
T ss_pred --CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCE
Confidence 223345677887653 3333344445666666654320 0 11111000 112235566644444444445566
Q ss_pred EEEEeccCC
Q psy14257 561 VIRANKWNG 569 (841)
Q Consensus 561 i~~~~~~~g 569 (841)
|...+..++
T Consensus 273 v~iw~~~~~ 281 (330)
T 2hes_X 273 LAVYEEVDG 281 (330)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 655554333
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=81.54 E-value=75 Score=36.07 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.4
Q ss_pred eeEEEcCCCCeEEEEe
Q psy14257 447 RAIALDPRFGLLFWTD 462 (841)
Q Consensus 447 ~giavd~~~g~Ly~td 462 (841)
.++|+||.++.+|+..
T Consensus 415 ~~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 415 NPMAYSQDTGLFYVPA 430 (582)
T ss_dssp SCCEECTTTCCEEEEE
T ss_pred CCceECCCCCEEEEec
Confidence 3679999999999875
|
| >3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.58 E-value=0.69 Score=47.68 Aligned_cols=32 Identities=34% Similarity=0.711 Sum_probs=29.1
Q ss_pred CCCCCCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 139 SDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 139 ~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
..|.+.|.+..+++.|.|.+||.+..+.+.|.
T Consensus 132 ~~c~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~ 163 (278)
T 3dem_A 132 LSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163 (278)
T ss_dssp CCCSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred ccCCcCcCCccCCcEEEeCCcceeccCCCCCc
Confidence 47989999999999999999999998888876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 841 | ||||
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 1e-46 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 4e-32 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 3e-15 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 4e-12 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 2e-43 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 2e-35 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 3e-12 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 7e-11 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 6e-09 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 2e-10 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 1e-05 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 0.001 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 2e-10 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 2e-05 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 0.004 | |
| d1cr8a_ | 42 | g.12.1.1 (A:) Ligand-binding domain of low-density | 3e-09 | |
| d1cr8a_ | 42 | g.12.1.1 (A:) Ligand-binding domain of low-density | 1e-06 | |
| d1cr8a_ | 42 | g.12.1.1 (A:) Ligand-binding domain of low-density | 8e-05 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 5e-09 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 2e-05 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 4e-05 | |
| d1f8za_ | 39 | g.12.1.1 (A:) Ligand-binding domain of low-density | 6e-09 | |
| d1f8za_ | 39 | g.12.1.1 (A:) Ligand-binding domain of low-density | 7e-07 | |
| d1f8za_ | 39 | g.12.1.1 (A:) Ligand-binding domain of low-density | 7e-05 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 7e-09 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 3e-05 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 1e-04 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 9e-09 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 2e-05 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 7e-05 | |
| d2fcwb1 | 39 | g.12.1.1 (B:86-124) Ligand-binding domain of low-d | 1e-08 | |
| d2fcwb1 | 39 | g.12.1.1 (B:86-124) Ligand-binding domain of low-d | 5e-07 | |
| d2fcwb1 | 39 | g.12.1.1 (B:86-124) Ligand-binding domain of low-d | 8e-05 | |
| d1v9u5_ | 39 | g.12.1.1 (5:) Very low-density lipoprotein recepto | 1e-08 | |
| d1v9u5_ | 39 | g.12.1.1 (5:) Very low-density lipoprotein recepto | 4e-08 | |
| d1v9u5_ | 39 | g.12.1.1 (5:) Very low-density lipoprotein recepto | 7e-05 | |
| d1ijqa2 | 50 | g.3.11.1 (A:643-692) Low density lipoprotein (LDL) | 2e-08 | |
| d1ijqa2 | 50 | g.3.11.1 (A:643-692) Low density lipoprotein (LDL) | 1e-04 | |
| d1ijqa2 | 50 | g.3.11.1 (A:643-692) Low density lipoprotein (LDL) | 0.001 | |
| d1d2la_ | 45 | g.12.1.1 (A:) Ligand-binding domain of low-density | 2e-08 | |
| d1d2la_ | 45 | g.12.1.1 (A:) Ligand-binding domain of low-density | 6e-07 | |
| d1d2la_ | 45 | g.12.1.1 (A:) Ligand-binding domain of low-density | 3e-06 | |
| d1j8ea_ | 44 | g.12.1.1 (A:) Ligand-binding domain of low-density | 2e-08 | |
| d1j8ea_ | 44 | g.12.1.1 (A:) Ligand-binding domain of low-density | 5e-07 | |
| d1j8ea_ | 44 | g.12.1.1 (A:) Ligand-binding domain of low-density | 9e-07 | |
| d2gtlo2 | 41 | g.12.1.1 (O:60-100) Extracellular hemoglobin linke | 4e-08 | |
| d2gtlo2 | 41 | g.12.1.1 (O:60-100) Extracellular hemoglobin linke | 4e-08 | |
| d2gtlo2 | 41 | g.12.1.1 (O:60-100) Extracellular hemoglobin linke | 2e-04 | |
| d1k7ba_ | 42 | g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai | 8e-08 | |
| d1k7ba_ | 42 | g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai | 5e-07 | |
| d1k7ba_ | 42 | g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai | 8e-05 | |
| d1f5ya1 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 8e-08 | |
| d1f5ya1 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 1e-06 | |
| d1f5ya1 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 1e-05 | |
| d3bpse1 | 40 | g.3.11.1 (E:293-332) Low density lipoprotein (LDL) | 8e-08 | |
| d3bpse1 | 40 | g.3.11.1 (E:293-332) Low density lipoprotein (LDL) | 0.002 | |
| d1ajja_ | 37 | g.12.1.1 (A:) Ligand-binding domain of low-density | 9e-08 | |
| d1ajja_ | 37 | g.12.1.1 (A:) Ligand-binding domain of low-density | 5e-07 | |
| d1ajja_ | 37 | g.12.1.1 (A:) Ligand-binding domain of low-density | 1e-04 | |
| d1f5ya2 | 41 | g.12.1.1 (A:45-85) Ligand-binding domain of low-de | 9e-08 | |
| d1f5ya2 | 41 | g.12.1.1 (A:45-85) Ligand-binding domain of low-de | 1e-07 | |
| d1f5ya2 | 41 | g.12.1.1 (A:45-85) Ligand-binding domain of low-de | 1e-04 | |
| d2gtln2 | 41 | g.12.1.1 (N:61-101) Extracellular hemoglobin linke | 2e-07 | |
| d2gtln2 | 41 | g.12.1.1 (N:61-101) Extracellular hemoglobin linke | 7e-07 | |
| d2gtln2 | 41 | g.12.1.1 (N:61-101) Extracellular hemoglobin linke | 9e-06 | |
| d2gtlm2 | 42 | g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co | 2e-07 | |
| d2gtlm2 | 42 | g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co | 4e-07 | |
| d2gtlm2 | 42 | g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co | 7e-06 | |
| d2fcwb2 | 39 | g.12.1.1 (B:125-163) Ligand-binding domain of low- | 2e-07 | |
| d2fcwb2 | 39 | g.12.1.1 (B:125-163) Ligand-binding domain of low- | 2e-06 | |
| d2fcwb2 | 39 | g.12.1.1 (B:125-163) Ligand-binding domain of low- | 3e-06 | |
| d1i0ua2 | 41 | g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r | 4e-07 | |
| d1i0ua2 | 41 | g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r | 7e-07 | |
| d1i0ua2 | 41 | g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r | 7e-05 | |
| d1xfea2 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 1e-06 | |
| d1xfea2 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 1e-05 | |
| d1xfea2 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 3e-05 | |
| d1szba2 | 45 | g.3.11.1 (A:124-168) Mannose-binding protein assoc | 2e-06 | |
| d1szba2 | 45 | g.3.11.1 (A:124-168) Mannose-binding protein assoc | 1e-05 | |
| d1szba2 | 45 | g.3.11.1 (A:124-168) Mannose-binding protein assoc | 6e-05 | |
| d1nzia2 | 42 | g.3.11.1 (A:118-159) Complement C1S component {Hum | 2e-06 | |
| d1nzia2 | 42 | g.3.11.1 (A:118-159) Complement C1S component {Hum | 9e-05 | |
| d1nzia2 | 42 | g.3.11.1 (A:118-159) Complement C1S component {Hum | 3e-04 | |
| d1nt0a3 | 45 | g.3.11.1 (A:120-164) Mannose-binding protein assoc | 3e-06 | |
| d1nt0a3 | 45 | g.3.11.1 (A:120-164) Mannose-binding protein assoc | 2e-05 | |
| d1nt0a3 | 45 | g.3.11.1 (A:120-164) Mannose-binding protein assoc | 2e-04 | |
| d1uzka1 | 43 | g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa | 2e-05 | |
| d1uzka1 | 43 | g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa | 7e-04 | |
| d1uzka2 | 43 | g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa | 2e-05 | |
| d1uzka2 | 43 | g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa | 9e-04 | |
| d1uzka2 | 43 | g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa | 0.002 | |
| d1lmja2 | 42 | g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien | 3e-05 | |
| d1lmja2 | 42 | g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien | 0.002 | |
| d1apqa_ | 53 | g.3.11.1 (A:) Complement protease C1R {Human (Homo | 2e-04 | |
| d1apqa_ | 53 | g.3.11.1 (A:) Complement protease C1R {Human (Homo | 2e-04 | |
| d1apqa_ | 53 | g.3.11.1 (A:) Complement protease C1R {Human (Homo | 5e-04 |
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 165 bits (418), Expect = 1e-46
Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 18/256 (7%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
+E+ M + + L D ++YW D ++ + G E T
Sbjct: 17 LERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-- 74
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+G P D +G+ ++W +S LD+IEVAK+ G RR L + +PR I
Sbjct: 75 -----RQDLGSPEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI 127
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
DP G L+WTDW+ P+IE M G +R ++ PNGLT D +++
Sbjct: 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-----QDNLGLPNGLTFDAFSSQLC 182
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
W+DA + + VL L +PFA+ + ++Y+TDW+TNSVI +
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS 239
Query: 570 SDVTLIQRTLTQPFIY 585
++ Q +Y
Sbjct: 240 KEMDTFHP-HKQTRLY 254
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 123 bits (310), Expect = 4e-32
Identities = 56/287 (19%), Positives = 107/287 (37%), Gaps = 40/287 (13%)
Query: 222 FVIFSNRHELRGVDL------RTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKI 275
++F+ ++ + L +T L K I L F +V+WTD+ + I
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV--DKVVYWTDISEPSI 60
Query: 276 YNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGM 335
A+L G +++ L + EG+A+D +G+ ++ +S IE A M
Sbjct: 61 GRASLHGG---EPTTIIRQDLGSPEGIALDHLGRTIFWT---------DSQLDRIEVAKM 108
Query: 336 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNT--VESVRVDGSERTVSFNLEVLG 393
G R L + P +V D + LYW D + + +E+ +DG+ R +
Sbjct: 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ----- 163
Query: 394 SDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDP 453
+ L WV++ + E + RR ++ G ++ P A+
Sbjct: 164 ----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSYG 218
Query: 454 RFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLT 500
L++TDW + + ++ + G+T
Sbjct: 219 --KNLYYTDWKTN--SVIAMDLAISKEMDTF----HPHKQTRLYGIT 257
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.1 bits (181), Expect = 3e-15
Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 27/218 (12%)
Query: 637 QFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPN--NLNFDAANKKIYWTDQEYNEVK 694
++F++ +I + LE + + + L FD +K +YWTD +
Sbjct: 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 695 RSSI------------VGGQIQLVVDAVFEFYLTPLSKRSSIV-----GGQIQLVVDAGI 737
R+S+ +G + +D + S+ I G Q +++ D G+
Sbjct: 62 RASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121
Query: 738 SHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVW 797
+P G+ D + N++ + KI +++G + L + +
Sbjct: 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI------LAQDNLGLPNGLTFD 175
Query: 798 PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYP 835
++ W + E R V+ +YP
Sbjct: 176 AFSSQLCWVDAGTH--RAECLNPAQPGRRKVLEGLQYP 211
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.3 bits (158), Expect = 4e-12
Identities = 39/253 (15%), Positives = 72/253 (28%), Gaps = 13/253 (5%)
Query: 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516
LLF IER + L GL D +YW D
Sbjct: 4 LLFAQTGK-----IERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP 58
Query: 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576
SI + G + ++ A+ ++WTD + + + A L
Sbjct: 59 SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD 118
Query: 577 RTLTQP-FIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCP-HVMKLMSDNKTCQVA 634
L P I + V N + + M+GT + + L + +
Sbjct: 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS 178
Query: 635 DSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVK 694
+ + ++ P + + + P + K +Y+TD + N V
Sbjct: 179 SQLCWVDAGTHRAECLNPAQPGRRKV----LEGLQYPFAVTSY--GKNLYYTDWKTNSVI 232
Query: 695 RSSIVGGQIQLVV 707
+ +
Sbjct: 233 AMDLAISKEMDTF 245
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 156 bits (395), Expect = 2e-43
Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 12/259 (4%)
Query: 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384
++ + K + + L+ N++ +L + + +YW D + S ++D +
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 65
Query: 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDME 444
S++ + + P+ D WI N+YW +S L + VA G R+TL +
Sbjct: 66 SSYDTVI---SRDIQAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 120
Query: 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQ 504
PRAI +DP G ++WTDW + +I++ ++G +V ++ WPNG+TLD
Sbjct: 121 KPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENI-----QWPNGITLDLL 174
Query: 505 LTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRA 564
R+YW+D+K SI ++ +G + +L + L HPF++A+FE+ V+WTD ++ A
Sbjct: 175 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 565 NKWNGSDVTLIQRTLTQPF 583
N+ GSDV L+ L P
Sbjct: 235 NRLTGSDVNLLAENLLSPE 253
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (335), Expect = 2e-35
Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 25/268 (9%)
Query: 221 PFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATL 280
++ F+NRHE+R + L +LI +L+N +ALD +N ++W+D+ I + L
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQL 59
Query: 281 IG-NSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN 339
+ +S+ D V+ + +GLAVDWI N+Y +S G + A G
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT---------DSVLGTVSVADTKGVK 110
Query: 340 RSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTV-ESVRVDGSERTVSFNLEVLGSDSRV 398
R L +N P ++V+D +YW D + ++G +
Sbjct: 111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---------E 161
Query: 399 GIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLL 458
I + LYWV+S L I ++G R+T++ + +L +
Sbjct: 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 221
Query: 459 FWTDWDSKAPRIERCSM-SGEHRSVIVR 485
FWTD ++ I + +G +++
Sbjct: 222 FWTDIINE--AIFSANRLTGSDVNLLAE 247
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (158), Expect = 3e-12
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 34/183 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
++ F+ E+R + L+ Y ++ IP + + L+ + A+ +IYW+D + +
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+ V+ I P GLA+DWI + I +
Sbjct: 59 LDRAHG----------------------VSSYDTVISRDIQAPDGLAVDWI--HSNIYWT 94
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
+ V + +G + T+ SK +I V PV G M+W++ +
Sbjct: 95 DSVLGTVSVADTKGVKRKTLF------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 148
Query: 818 AFM 820
Sbjct: 149 GLN 151
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (148), Expect = 7e-11
Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 49/288 (17%)
Query: 420 SNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH 479
+N ++ L T + ++ + A+ + ++W+D + I + H
Sbjct: 7 TNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQR--MICSTQLDRAH 63
Query: 480 RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLT 539
+++ P+GL +D+ + IYW D+ ++ G + + S
Sbjct: 64 GVSSYDT-VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 122
Query: 540 HPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNN 599
+ +YWTDW T + I+ +N
Sbjct: 123 RAIVVDPVHGFMYWTDWGTPAKIK------------------------------KGGLNG 152
Query: 600 GNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHT 659
+ L + + + + + S+ I +D+ T
Sbjct: 153 VDIYSLVTENIQWPNGITLDLLSGRL------------YWVDSKLHSISSIDVNGGNRKT 200
Query: 660 IPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVV 707
I ++ P +L K++WTD + ++ + G ++
Sbjct: 201 ILEDE-KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 245
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 6e-09
Identities = 34/289 (11%), Positives = 87/289 (30%), Gaps = 41/289 (14%)
Query: 513 AKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIA--LFENHVYWTDWRTNSVIRANKWNGS 570
+ +T D ++ ++ N L + A+ + N +YW+D +
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63
Query: 571 DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKT 630
V+ +++ +G+ S L + + T + + +
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR 123
Query: 631 CQVADSQ--FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQ 688
V D F+ ++ + I ++ + PN + D + ++YW D
Sbjct: 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183
Query: 689 EYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748
+ + + + GG + +++ + ++HP LA+
Sbjct: 184 KLHSISSIDVNGGNRKTILED------------------------EKRLAHPFSLAVF-- 217
Query: 749 AQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVW 797
+ + I N +L+ L + ++
Sbjct: 218 --EDKVFWTDIINEAIFSANRLTGSDVNLLA------ENLLSPEDMVLF 258
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (132), Expect = 2e-10
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C NG C C C+C L++D +C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 43
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (97), Expect = 1e-05
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C Q C C CH GY L D +C
Sbjct: 7 GGCEQYCSDHTGT-KRSCRCHEGYSLLADGVSCTP 40
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (82), Expect = 0.001
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 141 CHHDCYNTPEG-FMCVCPRDMYLQPDLITCS 170
C C + C C L D ++C+
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (131), Expect = 2e-10
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C + NG C C + C C +L + K+C+ A
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP 44
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (95), Expect = 2e-05
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C Q C+ S +N C+C GY L + +C+
Sbjct: 8 GRCEQFCKNSA-DNKVVCSCTEGYRLAENQKSCEP 41
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.0 bits (78), Expect = 0.004
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 141 CHHDCYNTPE-GFMCVCPRDMYLQPDLITC 169
C C N+ + +C C L + +C
Sbjct: 10 CEQFCKNSADNKVVCSCTEGYRLAENQKSC 39
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (122), Expect = 3e-09
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C CIPL W CDG DC D+SDE C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCM--DSSDEKSC 39
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (103), Expect = 1e-06
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCD 132
C EF C+ CIP CDG+ C + DE C+
Sbjct: 4 CHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCE 40
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (90), Expect = 8e-05
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 2 TCIIAYWKCDGDEDCKDGSDE 22
CI W+CDGD DC D SDE
Sbjct: 16 LCIPLRWRCDGDTDCMDSSDE 36
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.6 bits (121), Expect = 5e-09
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVAD 635
C ++NG C C +C C H L D+K+C +
Sbjct: 1 CSLDNGGCDQFCR-EERSEVRCSCAHGYVLGDDSKSCVSTE 40
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.2 bits (94), Expect = 2e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C Q C + +C+C GY L D +C S
Sbjct: 6 GGCDQFCREER--SEVRCSCAHGYVLGDDSKSCVS 38
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.8 bits (93), Expect = 4e-05
Identities = 7/35 (20%), Positives = 8/35 (22%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175
C C C C L D +C
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (120), Expect = 6e-09
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVN 71
C F C++ CI + CD + DC D SDE CVN
Sbjct: 3 CRPDEFQCSDG-NCIHGSRQCDREYDCK--DMSDEVGCVN 39
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (105), Expect = 7e-07
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C P EF C D CI + CD E C + DE+ C
Sbjct: 3 CRPDEFQCSD--GNCIHGSRQCDREYDCKDMSDEVGC 37
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (90), Expect = 7e-05
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQD 29
CI +CD + DCKD SDE C +
Sbjct: 14 NCIHGSRQCDREYDCKDMSDE--VGCVN 39
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (120), Expect = 7e-09
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C ++NG C+H CL G +C C KL D C A
Sbjct: 2 CSLDNGGCTHYCL-EEVGWRRCSCAPGYKLGDDLLQCHPAVK 42
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (93), Expect = 3e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C+ C V +C+C GY+L D+ C
Sbjct: 7 GGCTHYCLEEV--GWRRCSCAPGYKLGDDLLQCHP 39
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (88), Expect = 1e-04
Identities = 9/35 (25%), Positives = 10/35 (28%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175
C H C C C L DL+ C
Sbjct: 9 CTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (119), Expect = 9e-09
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C ++NG+C C + C C L + K C
Sbjct: 3 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKACIPTGP 43
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (95), Expect = 2e-05
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C Q C NS C+C GY L + C
Sbjct: 8 GDCDQFCHEEQ--NSVVCSCARGYTLADNGKACIP 40
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (91), Expect = 7e-05
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 134 KQCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
K C + C C+ +C C R L + C
Sbjct: 1 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (117), Expect = 1e-08
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
+ C ++ F C++ +CI + CD DC D SDE C
Sbjct: 1 KTCSQAEFRCHDG-KCISRQFVCDSDRDCL--DGSDEASC 37
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (106), Expect = 5e-07
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C EF C D CI + VCD + C +G DE C
Sbjct: 3 CSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASC 37
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (90), Expect = 8e-05
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
CI + CD D DC DGSDE
Sbjct: 15 CISRQFVCDSDRDCLDGSDE 34
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (117), Expect = 1e-08
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 CDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDEDHCVN 71
C +C + +CIP++W CDG+ DC DE++C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCD--SGEDEENCGN 39
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (113), Expect = 4e-08
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDE 133
C HE C CIP + CDGE C +GEDE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (90), Expect = 7e-05
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQD 29
CI W+CDG+ DC G DE E+C +
Sbjct: 15 CIPVSWRCDGENDCDSGEDE--ENCGN 39
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (117), Expect = 2e-08
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 595 CEMNNGNCSHLCLI-----GMNGTYKCQCPHVMKLMSDNKTC 631
++NG C +LCL + + C CP M L D ++C
Sbjct: 7 TTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (89), Expect = 1e-04
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 179 GTCSQDCEPSVSNN----SYKCTCHAGYELEPDMFTC 211
G C C P+ N + C C G L DM +C
Sbjct: 12 GGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (82), Expect = 0.001
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 131 CDEKQCLRSDCHHDCYNTPE------GFMCVCPRDMYLQPDLITC 169
C+ C + C P+ F C CP M L D+ +C
Sbjct: 4 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (116), Expect = 2e-08
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 28 QDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCV 70
+C F C + RCI W CDG DC D SDE +
Sbjct: 2 SPPQCQPGEFACANS-RCIQERWKCDGDNDCL--DNSDEAPAL 41
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (105), Expect = 6e-07
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
P C+P EF C + CI + CDG+ C + DE
Sbjct: 4 PQCQPGEFACAN--SRCIQERWKCDGDNDCLDNSDEAPA 40
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (100), Expect = 3e-06
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI WKCDGD DC D SDE C
Sbjct: 18 CIQERWKCDGDNDCLDNSDEAPALC 42
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (116), Expect = 2e-08
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTD 75
C + F CN RCIP W CDG DCG D SDE H CT+
Sbjct: 3 HSCSSTQFKCNSG-RCIPEHWTCDGDNDCG--DYSDETHAN--CTN 43
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (106), Expect = 5e-07
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 86 GNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
G+ + C +F C CIP+ CDG+ C + DE
Sbjct: 1 GSHS-----CSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDETHA 39
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (104), Expect = 9e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDR 30
CI +W CDGD DC D SDE +C ++
Sbjct: 17 CIPEHWTCDGDNDCGDYSDETHANCTNQ 44
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 47.9 bits (114), Expect = 4e-08
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
P+C+ HE C CI K VCDG C NGEDE C
Sbjct: 1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 47.5 bits (113), Expect = 4e-08
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 32 CDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDEDHCV 70
CDE C + +CI + CDG DC + DE C
Sbjct: 3 CDEHEHQCGGDDPQCISKLFVCDGHNDCR--NGEDEKDCT 40
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 37.5 bits (87), Expect = 2e-04
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
CI + CDG DC++G DE
Sbjct: 17 CISKLFVCDGHNDCRNGEDE 36
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Score = 46.8 bits (111), Expect = 8e-08
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 32 CDESHFTCNETL----RCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C+E C P W CDG PDC D DE C
Sbjct: 2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD--DGRDEWGC 41
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Score = 44.9 bits (106), Expect = 5e-07
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 94 ACEPHEFDCQDVLR---TCIPKALVCDGEPACFNGEDEMFC 131
+C P +F C + C P+ +CDG P C +G DE C
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Score = 38.3 bits (89), Expect = 8e-05
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 3 CIIAYWKCDGDEDCKDGSDEL 23
C W CDG DC DG DE
Sbjct: 19 CYPQDWLCDGHPDCDDGRDEW 39
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (112), Expect = 8e-08
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCV 70
+C+ + F C + +CI W CDG +C D SDE
Sbjct: 7 RCERNEFQCQDG-KCISYKWVCDGSAECQ--DGSDESQET 43
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (103), Expect = 1e-06
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
CE +EF CQD CI VCDG C +G DE
Sbjct: 8 CERNEFQCQD--GKCISYKWVCDGSAECQDGSDESQE 42
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (96), Expect = 1e-05
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI W CDG +C+DGSDE E C
Sbjct: 20 CISYKWVCDGSAECQDGSDESQETC 44
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (111), Expect = 8e-08
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 594 PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C NNG CSH+C + Y+C CP +L + C+
Sbjct: 4 ECLDNNGGCSHVCN-DLKIGYECLCPDGFQL-VAQRRCE 40
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.3 bits (79), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCK 212
G CS C Y+C C G++L C+
Sbjct: 10 GGCSHVCNDLK--IGYECLCPDGFQLV-AQRRCE 40
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (111), Expect = 9e-08
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C CI +W CDG PDC D SDE++C
Sbjct: 2 CSAFEFHCLSG-ECIHSSWRCDGGPDCK--DKSDEENC 36
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (106), Expect = 5e-07
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C EF C CI + CDG P C + DE C
Sbjct: 2 CSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (88), Expect = 1e-04
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
CI + W+CDG DCKD SDE
Sbjct: 14 CIHSSWRCDGGPDCKDKSDE 33
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (111), Expect = 9e-08
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 32 CDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F+C RCIP W CDGQ DC + SDE C
Sbjct: 5 CKSGDFSCGGRVNRCIPQFWRCDGQVDCD--NGSDEQGC 41
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (111), Expect = 1e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C+ +F C + CIP+ CDG+ C NG DE C
Sbjct: 5 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (88), Expect = 1e-04
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
CI +W+CDG DC +GSDE
Sbjct: 19 CIPQFWRCDGQVDCDNGSDE 38
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 46.0 bits (109), Expect = 2e-07
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 32 CDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDEDHCVND 72
C++ F C CI CDG DC + DED V D
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCH--NAHDEDPDVCD 41
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 44.1 bits (104), Expect = 7e-07
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
CE F C + CI LVCDG C N DE
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 41.0 bits (96), Expect = 9e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHC 27
CI CDG +DC + DE + C
Sbjct: 15 ECISDLLVCDGHKDCHNAHDEDPDVC 40
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 45.6 bits (108), Expect = 2e-07
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 32 CDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDEDHCV 70
CDE C + CI CDG+ DC D SDED
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCR--DGSDEDPET 40
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 44.9 bits (106), Expect = 4e-07
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
C+ HE +C+ + CI L CDGE C +G DE
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 36
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 41.4 bits (97), Expect = 7e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1 MTCIIAYWKCDGDEDCKDGSDELAEHC 27
CI CDG++DC+DGSDE E C
Sbjct: 15 PECIHDLLFCDGEKDCRDGSDEDPETC 41
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (108), Expect = 2e-07
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCV 70
C + F CN + CIP WACD PDC D SDE
Sbjct: 3 CGPASFQCNSS-TCIPQLWACDNDPDCE--DGSDEWPQR 38
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (102), Expect = 2e-06
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI W CD D DC+DGSDE + C
Sbjct: 15 CIPQLWACDNDPDCEDGSDEWPQRC 39
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (100), Expect = 3e-06
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C P F C TCIP+ CD +P C +G DE
Sbjct: 3 CGPASFQCNS--STCIPQLWACDNDPDCEDGSDEWPQ 37
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (107), Expect = 4e-07
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C+ + CS LC + + G YKCQC +L K C+
Sbjct: 4 CQ-DPDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKACK 39
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (105), Expect = 7e-07
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 175 CEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCK 212
C+ TCSQ C YKC C G++L+P CK
Sbjct: 4 CQDPDTCSQLCVNLE--GGYKCQCEEGFQLDPHTKACK 39
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (90), Expect = 7e-05
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
C C N G+ C C L P C
Sbjct: 10 CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 38
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (104), Expect = 1e-06
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI C+ DC+D SDE + C
Sbjct: 19 CITLDKVCNMARDCRDWSDEPIKEC 43
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (96), Expect = 1e-05
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
+ F C+ CI L C+ DC D SDE
Sbjct: 7 EGPNKFKCHSG-ECITLDKVCNMARDCR--DWSDEPIK 41
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (93), Expect = 3e-05
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCD 132
P++F C CI VC+ C + DE +
Sbjct: 7 EGPNKFKCHS--GECITLDKVCNMARDCRDWSDEPIKE 42
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (101), Expect = 2e-06
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 595 CEMNNGN---CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C++ G C H C G + C C L + +TC
Sbjct: 4 CQVAPGEAPTCDHHC-HNHLGGFYCSCRAGYVLHRNKRTCS 43
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (96), Expect = 1e-05
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
C C H C+N GF C C L + TCS
Sbjct: 4 CQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS 43
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (90), Expect = 6e-05
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 181 CSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214
C C + + C+C AGY L + TC +
Sbjct: 14 CDHHCHNHL--GGFYCSCRAGYVLHRNKRTCSEQ 45
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (101), Expect = 2e-06
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
+ + CSH C G Y C CP L D K C V
Sbjct: 4 TDFVDVPCSHFC-NNFIGGYFCSCPPEYFLHDDMKNCGV 41
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (89), Expect = 9e-05
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCK 212
CS C + Y C+C Y L DM C
Sbjct: 9 VPCSHFCNNFI--GGYFCSCPPEYFLHDDMKNCG 40
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (85), Expect = 3e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
C H C N G+ C CP + +L D+ C
Sbjct: 11 CSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.6 bits (100), Expect = 3e-06
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 595 CEMNNGN---CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
C + G+ C H C G Y C C L + TC
Sbjct: 4 CRTSLGDSVPCDHYC-HNYLGGYYCSCRVGYILHQNKHTCSA 44
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.3 bits (94), Expect = 2e-05
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
C C H C+N G+ C C L + TCS
Sbjct: 4 CRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCS 43
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.2 bits (86), Expect = 2e-04
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCK 212
C C + Y C+C GY L + TC
Sbjct: 12 VPCDHYCHNYL--GGYYCSCRVGYILHQNKHTCS 43
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (95), Expect = 2e-05
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C S C + G+Y C CP +L C
Sbjct: 6 CLDPTTCISGNC-VNTPGSYICDCPPDFELNPTRVGCV 42
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (83), Expect = 7e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
+C NTP ++C CP D L P + C
Sbjct: 13 ISGNCVNTPGSYICDCPPDFELNPTRVGC 41
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (94), Expect = 2e-05
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C+ G C I G+++C+CP L D + C
Sbjct: 6 CQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (82), Expect = 9e-04
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
C NT F C CP YL D C
Sbjct: 14 QGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.4 bits (79), Expect = 0.002
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
C + S++C C GY L D C
Sbjct: 12 LCQGGKCINTFG--SFQCRCPTGYYLNEDTRVC 42
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (92), Expect = 3e-05
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
C+ + C G+Y+C+CP +L + C
Sbjct: 5 CQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.8 bits (80), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
C+NT + C CP L P++ C
Sbjct: 13 RGGVCHNTEGSYRCECPPGHQLSPNISAC 41
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (87), Expect = 2e-04
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
E C HLC G Y C C +L D +CQ
Sbjct: 15 EEDPQPQCQHLC-HNYVGGYFCSCRPGYELQEDRHSCQA 52
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (87), Expect = 2e-04
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 169 CSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214
C C V Y C+C GYEL+ D +C+++
Sbjct: 14 GEEDPQP----QCQHLCHNYVG--GYFCSCRPGYELQEDRHSCQAE 53
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (85), Expect = 5e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
C H C+N G+ C C LQ D +C
Sbjct: 22 CQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.95 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.88 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.82 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.8 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.76 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.71 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.7 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.68 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.67 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.51 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.47 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.46 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.46 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.43 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.41 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.35 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.32 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.13 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.11 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 98.93 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 98.92 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 98.92 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 98.89 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 98.85 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 98.85 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 98.81 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 98.81 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 98.8 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 98.78 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.78 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 98.73 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 98.73 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.73 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 98.72 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 98.68 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 98.67 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 98.66 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.65 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 98.64 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 98.62 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 98.62 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 98.61 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 98.61 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 98.59 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 98.56 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.55 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.54 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 98.52 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 98.51 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.51 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.5 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 98.5 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 98.47 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.46 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.44 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 98.43 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 98.4 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 98.38 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 98.38 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 98.37 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 98.35 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 98.34 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 98.33 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 98.32 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 98.31 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.31 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 98.29 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.29 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.28 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 98.28 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 98.28 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.27 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.24 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.23 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.21 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.2 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 98.18 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.17 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 98.16 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 98.15 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 98.15 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 98.14 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.14 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 98.13 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 98.11 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 98.11 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 98.09 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.09 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.07 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.03 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.02 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.98 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.96 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 97.92 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.78 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.24 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.22 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.13 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.05 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.05 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 96.98 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.96 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.86 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.66 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.56 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.52 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.43 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.35 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 96.16 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.88 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 95.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 95.77 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 95.75 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 95.61 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 95.58 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 95.44 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.27 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 95.25 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 94.65 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 94.39 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.24 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 94.19 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 94.19 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 94.05 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 93.81 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.52 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 93.51 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 93.19 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 93.08 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 93.05 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 92.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 92.54 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.18 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 91.99 | |
| d1dx5i1 | 43 | Thrombomodulin, different EGF-like domains {Human | 91.93 | |
| d1dx5i1 | 43 | Thrombomodulin, different EGF-like domains {Human | 90.23 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 89.12 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 88.64 | |
| d1haea_ | 63 | Heregulin-alpha, EGF-like domain {Human (Homo sapi | 88.33 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 88.09 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 87.94 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 87.11 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 87.04 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 86.12 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 85.01 | |
| d1cvua2 | 41 | Prostaglandin H2 synthase-1, EGF-like module {Mous | 84.94 | |
| d1q4ga2 | 42 | Prostaglandin H2 synthase-1, EGF-like module {Shee | 84.75 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 83.66 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 83.54 | |
| d3egfa_ | 53 | Epidermal growth factor, EGF {Mouse (Mus musculus) | 83.34 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 83.17 | |
| d1nqlb_ | 48 | Epidermal growth factor, EGF {Human (Homo sapiens) | 82.96 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-40 Score=345.42 Aligned_cols=259 Identities=34% Similarity=0.703 Sum_probs=228.5
Q ss_pred CeEEeccCccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCc-ccceEEEEeCCCCCc
Q psy14257 221 PFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNS-LSNIDVVVQTGLSTA 299 (841)
Q Consensus 221 p~ll~s~~~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~-~~~~~~~~~~~l~~p 299 (841)
|||+|++.++|+++++++.+...+++++++++|||||+..++ |||+|...+.|+++.+++.. ....++++..++..|
T Consensus 2 ~fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~--lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTE--EEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred CEEEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCE--EEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 799999999999999999999999999999999999998776 99999999999999987532 113456666777778
Q ss_pred cceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec
Q psy14257 300 EGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD 379 (841)
Q Consensus 300 ~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld 379 (841)
.||||||.+
T Consensus 80 ~glAvD~~~----------------------------------------------------------------------- 88 (266)
T d1ijqa1 80 DGLAVDWIH----------------------------------------------------------------------- 88 (266)
T ss_dssp CEEEEETTT-----------------------------------------------------------------------
T ss_pred ceEEEeecc-----------------------------------------------------------------------
Confidence 888877765
Q ss_pred CCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEE
Q psy14257 380 GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLF 459 (841)
Q Consensus 380 G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly 459 (841)
++|||+|...++|++++++|...++++...+.+|++|++||.+|+||
T Consensus 89 ---------------------------------~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly 135 (266)
T d1ijqa1 89 ---------------------------------SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 135 (266)
T ss_dssp ---------------------------------TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred ---------------------------------ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEE
Confidence 78888888888999999999988888888889999999999999999
Q ss_pred EEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCC
Q psy14257 460 WTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLT 539 (841)
Q Consensus 460 ~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~ 539 (841)
|++++. .++|+|++|||+.++.++. ..+..|+||++|+.+++|||+|...++|++++++|++++++......+.
T Consensus 136 ~~~~~~-~~~I~r~~~dGs~~~~l~~-----~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~ 209 (266)
T d1ijqa1 136 WTDWGT-PAKIKKGGLNGVDIYSLVT-----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 209 (266)
T ss_dssp EEECSS-SCEEEEEETTSCCEEEEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred EeccCC-CcceeEeccCCCceecccc-----cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCccc
Confidence 999983 5799999999999999987 6789999999999999999999999999999999999998888776788
Q ss_pred cceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec--cCCcc
Q psy14257 540 HPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV--NGVVK 591 (841)
Q Consensus 540 ~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h--~qp~~ 591 (841)
+|++|++++++|||+|+.+++|++++|.+|+..+.+...+..|.+ || +||.+
T Consensus 210 ~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~~QP~g 266 (266)
T d1ijqa1 210 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRG 266 (266)
T ss_dssp SEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCC
T ss_pred ccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECCccCCCC
Confidence 999999999999999999999999999999999988888888887 66 78854
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-37 Score=323.80 Aligned_cols=248 Identities=31% Similarity=0.600 Sum_probs=216.4
Q ss_pred CeEEeccCccccccccccccE------EEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeC
Q psy14257 221 PFVIFSNRHELRGVDLRTFNV------IALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT 294 (841)
Q Consensus 221 p~ll~s~~~~I~~~~~~~~~~------~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~ 294 (841)
.||+|++.++|+++++++... ..+....+.++|||||+..++ |||+|...++|+++.++|+ ..++++..
T Consensus 2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~--iywsd~~~~~I~~~~l~g~---~~~~v~~~ 76 (263)
T d1npea_ 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV--VYWTDISEPSIGRASLHGG---EPTTIIRQ 76 (263)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE--EEEEETTTTEEEEEESSSC---CCEEEECT
T ss_pred CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE--EEEEECCCCeEEEEEcccC---CcEEEEEe
Confidence 379999999999999986432 234444567899999998766 9999999999999999865 46777778
Q ss_pred CCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEE
Q psy14257 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVE 374 (841)
Q Consensus 295 ~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~ 374 (841)
++..|.||||||.+
T Consensus 77 ~~~~p~~iAvD~~~------------------------------------------------------------------ 90 (263)
T d1npea_ 77 DLGSPEGIALDHLG------------------------------------------------------------------ 90 (263)
T ss_dssp TCCCEEEEEEETTT------------------------------------------------------------------
T ss_pred ccccccEEEEeccC------------------------------------------------------------------
Confidence 88899999998766
Q ss_pred EEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCC
Q psy14257 375 SVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPR 454 (841)
Q Consensus 375 ~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~ 454 (841)
++|||+|...++|.+++++|+.+++++..++..|++||+||.
T Consensus 91 --------------------------------------~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~ 132 (263)
T d1npea_ 91 --------------------------------------RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV 132 (263)
T ss_dssp --------------------------------------TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred --------------------------------------CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecc
Confidence 788888888889999999999888888888899999999999
Q ss_pred CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC
Q psy14257 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~ 534 (841)
+|+|||++++...++|+|++|||++++.++. ..+..|+|||+|+.+++|||+|...++|++++++|..+++++.+
T Consensus 133 ~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-----~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~ 207 (263)
T d1npea_ 133 RGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG 207 (263)
T ss_dssp TTEEEEEECCSSSCEEEEEETTSCCCEEEEC-----TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC
T ss_pred cCcEEEeecCCCCcEEEEecCCCCCceeeee-----ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC
Confidence 9999999998666789999999999999887 68899999999999999999999999999999999999988865
Q ss_pred CCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEe-cccCCCcee
Q psy14257 535 HDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQ-RTLTQPFIY 585 (841)
Q Consensus 535 ~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~-~~~~~p~~~ 585 (841)
+.+|++|++++++||||||.+++|.+++|.+|+...++. ....+|++.
T Consensus 208 ---~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi 256 (263)
T d1npea_ 208 ---LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI 256 (263)
T ss_dssp ---CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCE
T ss_pred ---CCCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceE
Confidence 689999999999999999999999999999998887664 444667773
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=2.3e-27 Score=246.66 Aligned_cols=247 Identities=19% Similarity=0.364 Sum_probs=196.0
Q ss_pred eEEEEecCCCcEEEEccCCceEE-----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 414 NLYWVESNLDQIEVAKLSGQFRR-----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~~~~-----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
.|+|+.. +.|.++.++|.... ..+......+.||++|+.+++|||+|.. .++|++++++|+..++++.
T Consensus 3 fLl~s~~--~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~--~~~I~~~~l~g~~~~~v~~--- 75 (263)
T d1npea_ 3 HLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPTTIIR--- 75 (263)
T ss_dssp EEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCEEEEC---
T ss_pred EEEEeCC--CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC--CCeEEEEEcccCCcEEEEE---
Confidence 5777764 58999999986422 2232334567899999999999999987 7899999999999998887
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccC
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~ 568 (841)
..+..|.|||+|..+++|||+|...++|++++++|..++++.... +
T Consensus 76 --~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~--l------------------------------ 121 (263)
T d1npea_ 76 --QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG--L------------------------------ 121 (263)
T ss_dssp --TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--C------------------------------
T ss_pred --eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc--c------------------------------
Confidence 678899999999999999999988888888887766543332110 1
Q ss_pred CcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEE
Q psy14257 569 GSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIR 648 (841)
Q Consensus 569 g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~ 648 (841)
T Consensus 122 -------------------------------------------------------------------------------- 121 (263)
T d1npea_ 122 -------------------------------------------------------------------------------- 121 (263)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCC--CeEEEEEcccCceeeeeeeeeeeecccccccccccC
Q psy14257 649 GVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEY--NEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVG 726 (841)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (841)
..|.+|++||..+.|||++... ..|+|+.++|++
T Consensus 122 --------------------~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~------------------------ 157 (263)
T d1npea_ 122 --------------------VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN------------------------ 157 (263)
T ss_dssp --------------------SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC------------------------
T ss_pred --------------------cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC------------------------
Confidence 1234566778888888887543 358888888887
Q ss_pred ceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEE
Q psy14257 727 GQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWS 806 (841)
Q Consensus 727 ~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~ 806 (841)
++.++..++..|.|||||..+++|||+ |...++|++++++|..+++++.+ +.+|.+|||+ .++|||+
T Consensus 158 --~~~i~~~~~~~P~glaiD~~~~~lYw~--d~~~~~I~~~~~~g~~~~~v~~~-------~~~P~~lav~--~~~lYwt 224 (263)
T d1npea_ 158 --RRILAQDNLGLPNGLTFDAFSSQLCWV--DAGTHRAECLNPAQPGRRKVLEG-------LQYPFAVTSY--GKNLYYT 224 (263)
T ss_dssp --CEEEECTTCSCEEEEEEETTTTEEEEE--ETTTTEEEEEETTEEEEEEEEEC-------CCSEEEEEEE--TTEEEEE
T ss_pred --ceeeeeecccccceEEEeecCcEEEEE--eCCCCEEEEEECCCCCeEEEECC-------CCCcEEEEEE--CCEEEEE
Confidence 666777788999999999999999999 56789999999999999999887 8899999998 6899999
Q ss_pred ecCCCcceEEEEecCCCceEEEecCCCCceeccc
Q psy14257 807 NVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTGV 840 (841)
Q Consensus 807 d~~~~~~~I~~~~~dG~~~~~l~~~~~~~~~~~~ 840 (841)
|++.+ +|.|++..+.....++.....+.+.||
T Consensus 225 d~~~~--~I~~~~~~~g~~~~~~~~~~~~~~~gi 256 (263)
T d1npea_ 225 DWKTN--SVIAMDLAISKEMDTFHPHKQTRLYGI 256 (263)
T ss_dssp ETTTT--EEEEEETTTTEEEEEECCSSCCCCCCE
T ss_pred ECCCC--EEEEEECCCCccceEECCCCCCCcceE
Confidence 99885 899999986666555554544445554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.4e-25 Score=229.25 Aligned_cols=243 Identities=22% Similarity=0.411 Sum_probs=191.3
Q ss_pred CeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe----eEEE
Q psy14257 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD----HHVV 531 (841)
Q Consensus 456 g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~----~~~i 531 (841)
.+|+++. ...|.+++++++....++. .+..|.+|++|+.+++|||+|...+.|.+++++|.. .+++
T Consensus 2 ~fLl~s~----~~~I~~~~l~~~~~~~~~~------~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~ 71 (266)
T d1ijqa1 2 AYLFFTN----RHEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV 71 (266)
T ss_dssp CEEEEEC----BSSEEEEETTSCCCEEEEC------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE
T ss_pred CEEEEEC----CCeEEEEECCCCcceeeeC------CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEE
Confidence 4788888 3579999999998888864 678899999999999999999999999999999843 4445
Q ss_pred EcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccC
Q psy14257 532 LSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIG 609 (841)
Q Consensus 532 ~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~ 609 (841)
+.. .+.+|.|||++ .+.|||+|...++|.+++.. |....
T Consensus 72 ~~~--~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~------------------------------------ 112 (266)
T d1ijqa1 72 ISR--DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRK------------------------------------ 112 (266)
T ss_dssp ECS--SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEE------------------------------------
T ss_pred EeC--CCCCcceEEEeeccceEEEEecCCCEEEeEecC-CceEE------------------------------------
Confidence 543 36789999996 79999999888877666532 11100
Q ss_pred CCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECC
Q psy14257 610 MNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQE 689 (841)
Q Consensus 610 ~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~ 689 (841)
.++ ..++.+|.+|++||..+.|||++..
T Consensus 113 -----------------------------~~~-----------------------~~~~~~P~~l~vd~~~g~ly~~~~~ 140 (266)
T d1ijqa1 113 -----------------------------TLF-----------------------RENGSKPRAIVVDPVHGFMYWTDWG 140 (266)
T ss_dssp -----------------------------EEE-----------------------ECTTCCEEEEEEETTTTEEEEEECS
T ss_pred -----------------------------EEE-----------------------cCCCCCcceEEEEcccCeEEEeccC
Confidence 000 0122457889999999999999965
Q ss_pred C-CeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEe
Q psy14257 690 Y-NEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCN 768 (841)
Q Consensus 690 ~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~ 768 (841)
. ..|+|++++|++ .+.++...+..|.|||+|..+++|||+ |...++|++++
T Consensus 141 ~~~~I~r~~~dGs~--------------------------~~~l~~~~~~~p~gl~iD~~~~~lYw~--d~~~~~I~~~~ 192 (266)
T d1ijqa1 141 TPAKIKKGGLNGVD--------------------------IYSLVTENIQWPNGITLDLLSGRLYWV--DSKLHSISSID 192 (266)
T ss_dssp SSCEEEEEETTSCC--------------------------EEEEECSSCSCEEEEEEETTTTEEEEE--ETTTTEEEEEE
T ss_pred CCcceeEeccCCCc--------------------------eecccccccceeeEEEeeccccEEEEe--cCCcCEEEEEE
Confidence 4 589999999998 677777788999999999999999999 56789999999
Q ss_pred cCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEe-cCCCceEEEecCCCCc
Q psy14257 769 LEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF-MDGTKRETVVSQKKYP 835 (841)
Q Consensus 769 l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~-~dG~~~~~l~~~~~~~ 835 (841)
++|..+++++... ..+.+|.+|||+ .++|||+|++.+ +|.|++ .+|++.+.+......|
T Consensus 193 ~dG~~~~~~~~~~----~~~~~p~~lav~--~~~ly~td~~~~--~I~~~~~~~g~~~~~~~~~~~~p 252 (266)
T d1ijqa1 193 VNGGNRKTILEDE----KRLAHPFSLAVF--EDKVFWTDIINE--AIFSANRLTGSDVNLLAENLLSP 252 (266)
T ss_dssp TTSCSCEEEEECT----TTTSSEEEEEEE--TTEEEEEETTTT--EEEEEETTTCCCCEEEECSCSCC
T ss_pred CCCCCEEEEEeCC----CcccccEEEEEE--CCEEEEEECCCC--eEEEEECCCCcceEEEEcCCCCc
Confidence 9999988887641 126799999998 579999999875 899997 5677788777765444
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=7.8e-22 Score=204.84 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=183.3
Q ss_pred CCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEE
Q psy14257 297 STAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESV 376 (841)
Q Consensus 297 ~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~ 376 (841)
..|.|||+|.. +++|+++.. ..++|.+...++.....+....+..|.||++|.+ ++|||+|...+.|..
T Consensus 14 ~~P~~vavd~d---G~i~v~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~-g~i~v~d~~~~~i~~- 82 (260)
T d1rwia_ 14 LSPSGVAVDSA---GNVYVTSEG------MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDFNNRVVTL- 82 (260)
T ss_dssp CCEEEEEECTT---CCEEEEECS------SSCEEEEEC----CEEECCCCSCCSCCCEEECTT-CCEEEEETTTEEEEE-
T ss_pred CCCCEEEEcCC---CCEEEEEcC------CCCEEEEEcCCCceEEEeccCCccCceEEEEcCC-CCEEEeeeeeceeee-
Confidence 47999999953 455555543 3468999999988877777778899999999975 679999998877654
Q ss_pred EecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCC
Q psy14257 377 RVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG 456 (841)
Q Consensus 377 ~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g 456 (841)
..+++...+ .....+..+.. +++|. .++|||+|..++++.+++.++.........++..|.+|++++. |
T Consensus 83 ~~~~~~~~~-~~~~~~~~p~~--------iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g 151 (260)
T d1rwia_ 83 AAGSNNQTV-LPFDGLNYPEG--------LAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-G 151 (260)
T ss_dssp CTTCSCCEE-CCCCSCCSEEE--------EEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTT-C
T ss_pred eeeccceee-eeeeeeeeccc--------ccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCC-C
Confidence 334443332 22221111111 23343 3789999999999999999998877766677899999999985 7
Q ss_pred eEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC
Q psy14257 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD 536 (841)
Q Consensus 457 ~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~ 536 (841)
.||++++. ..+|.+++++|..+..+.. ..+..|.||++|. +++|||+|..+++|.++++++.....+...
T Consensus 152 ~~~v~~~~--~~~i~~~d~~~~~~~~~~~-----~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~-- 221 (260)
T d1rwia_ 152 NVYVTDTD--NNRVVKLEAESNNQVVLPF-----TDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFT-- 221 (260)
T ss_dssp CEEEEEGG--GTEEEEECTTTCCEEECCC-----SSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCC--
T ss_pred CEeeeccc--cccccccccccceeeeeec-----cccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccC--
Confidence 89999988 7899999999988776654 5789999999995 579999999999999999998876665433
Q ss_pred CCCcceEEEEec-CeEEEEeCCCCeEEEEecc
Q psy14257 537 SLTHPFAIALFE-NHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 537 ~l~~P~gla~~~-~~lY~td~~~~~i~~~~~~ 567 (841)
.+..|.+|++.. |.|||+|+.+++|.+++..
T Consensus 222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 222 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 378899999974 7999999999999998864
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=2.3e-19 Score=185.87 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=178.5
Q ss_pred ceeeecccccCCcceeEEEecCC-CeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVID-DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG 328 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~-~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~ 328 (841)
.|.+|+++.. +. ||+++... ++|.+.+..+. ........++..|.|||+|+. +.+||++...
T Consensus 15 ~P~~vavd~d-G~--i~v~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~gvav~~~---g~i~v~d~~~-------- 77 (260)
T d1rwia_ 15 SPSGVAVDSA-GN--VYVTSEGMYGRVVKLATGST---GTTVLPFNGLYQPQGLAVDGA---GTVYVTDFNN-------- 77 (260)
T ss_dssp CEEEEEECTT-CC--EEEEECSSSCEEEEEC-------CEEECCCCSCCSCCCEEECTT---CCEEEEETTT--------
T ss_pred CCCEEEEcCC-CC--EEEEEcCCCCEEEEEcCCCc---eEEEeccCCccCceEEEEcCC---CCEEEeeeee--------
Confidence 4667777653 56 99998655 67877755432 223333456779999999964 3456676542
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcc
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~av 408 (841)
.+.+...++.....+....+..|.||++|.. ++|||+|...+++.+++.++........ ..+..+.. +++
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~-g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~--------i~~ 147 (260)
T d1rwia_ 78 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDG--------VAV 147 (260)
T ss_dssp EEEEECTTCSCCEECCCCSCCSEEEEEECTT-CCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCE--------EEE
T ss_pred ceeeeeeeccceeeeeeeeeeeccccccccc-ceeEeeccccccccccccccceeeeeee-cccCCcce--------eee
Confidence 4445555566555555667899999999984 5799999999999999988876654321 11222222 233
Q ss_pred ccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 409 LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 409 dw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
+. .++||+++...++|.+++.++....++....+..|.||++|+. |.|||+++. +++|+++..++...+.+..
T Consensus 148 ~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~-g~l~vsd~~--~~~i~~~~~~~~~~~~~~~--- 220 (260)
T d1rwia_ 148 DN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHN--TNQVVKLLAGSTTSTVLPF--- 220 (260)
T ss_dssp CT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEEETT--TTEEEEECTTCSCCEECCC---
T ss_pred cC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeee-eeeeeeecC--CCEEEEEeCCCCeEEEEcc---
Confidence 33 3789999999999999999999888777678899999999985 899999998 7899999999988776654
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~ 526 (841)
..+..|.||++|. ++.|||+|..+++|.+++..+.
T Consensus 221 --~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i~~~~~ 255 (260)
T d1rwia_ 221 --TGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEH 255 (260)
T ss_dssp --CSCCCEEEEEECT-TCCEEEEEGGGTEEEEECCCGG
T ss_pred --CCCCCeEEEEEeC-CCCEEEEECCCCEEEEEeCCCC
Confidence 5788999999995 5789999999999999987654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.80 E-value=1.4e-18 Score=185.03 Aligned_cols=255 Identities=15% Similarity=0.180 Sum_probs=180.6
Q ss_pred EEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccccc----CcCCCceEEEEccCCEEEE
Q psy14257 290 VVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTK----NIQWPSSLVIDYNQDILYW 365 (841)
Q Consensus 290 ~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~----~~~~P~glavD~~~~~lYw 365 (841)
+.+..++..|+|+|+|+.+ ++|+. +......+..+++|.|+++++.....+... ....|.||++|.++++||+
T Consensus 11 ~~v~~~~~g~EGpa~d~dG-~ly~~--~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~v 87 (314)
T d1pjxa_ 11 TKVTEDIPGAEGPVFDKNG-DFYIV--APEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp EEEECCCTTCEEEEECTTS-CEEEE--ETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred EEeecCCCCCeEeEEeCCC-CEEEE--ECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEE
Confidence 4567889999999999754 66654 332222244567999999988765554332 3457999999999999999
Q ss_pred EeCCCCeEEEEEecCCccEEEEee---eeecCCCccccCCCCCCccccccceEEEEecC---------------CCcEEE
Q psy14257 366 CDSHLNTVESVRVDGSERTVSFNL---EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN---------------LDQIEV 427 (841)
Q Consensus 366 aD~~~~~I~~~~ldG~~~~~~~~~---~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~---------------~~~I~v 427 (841)
+|.. +.|.+++++|...+++... ..+..+.. +++|. .|+||+||.. .++|++
T Consensus 88 ad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pnd--------l~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~ 157 (314)
T d1pjxa_ 88 ADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCND--------CAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp EETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCE--------EEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred EECC-CeEEEEeCCCcEEEEEeccccccccCCCcE--------EEECC-CCCEEEecCccCcccccccceeccCCceEEE
Confidence 9975 5799999999765543211 01111111 12332 2899999854 347899
Q ss_pred EccCCceEEEEecCCCCCceeEEEcCCCC----eEEEEecCCCCCeEEEecCCCCC----cEEEEEecccCCCCCCceeE
Q psy14257 428 AKLSGQFRRTLIAGDMESPRAIALDPRFG----LLFWTDWDSKAPRIERCSMSGEH----RSVIVRVDLLTSRGAWPNGL 499 (841)
Q Consensus 428 ~~~~G~~~~~l~~~~l~~P~giavd~~~g----~Ly~td~~~~~~~I~r~~ldG~~----~~~i~~~~~~~~~~~~P~gl 499 (841)
++.+|+..... ..+..|+||++++... +||++|.. ..+|+++++++.. ++++... .......|.||
T Consensus 158 ~~~dg~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~--~~~i~~~d~~~~g~~~~~~~~~~~--~~~~~~~pdGi 231 (314)
T d1pjxa_ 158 FTTDGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGM 231 (314)
T ss_dssp ECTTSCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEE
T ss_pred EeecCceeEee--CCcceeeeeEECCCCCcceeEEEEEeec--ccceEEeeccCccccceeeEEEEc--cccccccceee
Confidence 99999866543 3578899999987643 79999987 7899999876443 2233331 11234569999
Q ss_pred EEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec--CeEEEEeCCCCeEEEEec
Q psy14257 500 TLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE--NHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 500 alD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~--~~lY~td~~~~~i~~~~~ 566 (841)
++| .+++||+++...++|.+++++|......+... ...|.++++.. +.||+|+..+++|++++.
T Consensus 232 avD-~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 232 DFD-EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEB-TTCCEEEEEETTTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEe-cCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 999 56899999999999999999976543333322 35788999843 469999999999999874
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.76 E-value=6.5e-17 Score=169.00 Aligned_cols=240 Identities=14% Similarity=0.128 Sum_probs=177.5
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEe------CCCCCccceEEeeecCceeEEEeeecCC
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQ------TGLSTAEGLAVDWIGKNLYMFWAFWSLS 321 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~------~~l~~p~giavD~~~~~~y~~~td~~~~ 321 (841)
+..|.+|+++. +++ ||++|..+++|.+.+.+|.- ...+. .....|.+++++... ..+++..++
T Consensus 22 f~~P~gvavd~-dg~--i~VaD~~n~rI~v~d~~G~~----~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~--- 90 (279)
T d1q7fa_ 22 FTEPSGVAVNA-QND--IIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERS--- 90 (279)
T ss_dssp BSCEEEEEECT-TCC--EEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECG---
T ss_pred ECCccEEEEcC-CCC--EEEEECCCCEEEEEeCCCCE----EEEecccCCCcccccccccccccccc-cccceeccC---
Confidence 44566676665 356 99999999999999876532 22221 123468888877543 233332322
Q ss_pred CCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccC
Q psy14257 322 PSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIP 401 (841)
Q Consensus 322 ~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~ 401 (841)
.+++|.+.+.+|.....+....+..|.++++|..
T Consensus 91 ----~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~------------------------------------------ 124 (279)
T d1q7fa_ 91 ----PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK------------------------------------------ 124 (279)
T ss_dssp ----GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTT------------------------------------------
T ss_pred ----CccccccccccccceeecCCCcccccceeccccC------------------------------------------
Confidence 3458999999999888887788899999999854
Q ss_pred CCCCCccccccceEEEEecCCCcEEEEccCCceEEEEe-cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc
Q psy14257 402 NCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLI-AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR 480 (841)
Q Consensus 402 ~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~-~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~ 480 (841)
+++|+++...+++.+++.+|+....+. ...+..|.+|++|+. |.||++++. .++|++++.+|...
T Consensus 125 -----------G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~-g~i~v~d~~--~~~V~~~d~~G~~~ 190 (279)
T d1q7fa_ 125 -----------GRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNR--AHCVKVFNYEGQYL 190 (279)
T ss_dssp -----------SCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS-SEEEEEEGG--GTEEEEEETTCCEE
T ss_pred -----------CcEEEEeeccceeeEeccCCceeecccccccccccceeeeccc-eeEEeeecc--ccceeeeecCCcee
Confidence 566666666677777777777665543 345789999999975 889999987 78999999999866
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCC-CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCC
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS-DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRT 558 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~-~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~ 558 (841)
..+.. ...+..|.||++|+ .++||++|..+ .+|..++.+|+.+.++.... ....|.+|++. +++||++++ +
T Consensus 191 ~~~g~----~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~-~~~~p~~vav~~dG~l~V~~~-n 263 (279)
T d1q7fa_ 191 RQIGG----EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKV-KHAQCFDVALMDDGSVVLASK-D 263 (279)
T ss_dssp EEESC----TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESS-CCSCEEEEEEETTTEEEEEET-T
T ss_pred eeecc----cccccCCccccccc-CCeEEEEECCCCcEEEEECCCCCEEEEEeCCC-CCCCEeEEEEeCCCcEEEEeC-C
Confidence 55532 14678899999996 56799999764 47999999999888876542 35689999996 579999995 6
Q ss_pred CeEEEEe
Q psy14257 559 NSVIRAN 565 (841)
Q Consensus 559 ~~i~~~~ 565 (841)
++|....
T Consensus 264 ~~v~~fr 270 (279)
T d1q7fa_ 264 YRLYIYR 270 (279)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 7766554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.71 E-value=1.6e-15 Score=161.51 Aligned_cols=242 Identities=15% Similarity=0.180 Sum_probs=164.5
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
..++.||.+ ++ |||+|...++|+|++++++. ....+......|.|||+++.+ ++|+ ++.+. ....++|
T Consensus 42 lEG~~~D~~-G~--Ly~~D~~~g~I~ri~p~g~~---~~~~~~~~~~~p~gla~~~dG-~l~v--a~~~~---~~~~~~i 109 (319)
T d2dg1a1 42 LEGLNFDRQ-GQ--LFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHKDG-RLFV--CYLGD---FKSTGGI 109 (319)
T ss_dssp EEEEEECTT-SC--EEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECTTS-CEEE--EECTT---SSSCCEE
T ss_pred cEeCEECCC-CC--EEEEECCCCEEEEEECCCCe---EEEEEeCCCCCeeEEEECCCC-CEEE--EecCC---CccceeE
Confidence 357778754 66 99999999999999887653 334455566789999999643 4554 44321 1234578
Q ss_pred EEEccCCCccccccc--cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcc
Q psy14257 331 EKAGMHGENRSPLVT--KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408 (841)
Q Consensus 331 ~~~~~dG~~~~~l~~--~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~av 408 (841)
.+.+.++.....++. .....|+++++|+++ +||++|......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~----------------------------------- 153 (319)
T d2dg1a1 110 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYST----------------------------------- 153 (319)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTT-----------------------------------
T ss_pred EEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccc-----------------------------------
Confidence 888888877666553 356789999999764 577776532100
Q ss_pred ccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC--CcEEEEE-
Q psy14257 409 LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE--HRSVIVR- 485 (841)
Q Consensus 409 dw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~--~~~~i~~- 485 (841)
...+.|.+++.+|+..+.+. .++..|+||++++..+.||++|.. .++|++++++.. .......
T Consensus 154 -----------~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~lyvad~~--~~~I~~~d~~~~g~~~~~~~~~ 219 (319)
T d2dg1a1 154 -----------NPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGAT 219 (319)
T ss_dssp -----------BCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEE
T ss_pred -----------cCcceeEEEecccceeEEEe-eccceeeeeeeccccceEEEeccc--CCceEEEEEcCCCceeccccce
Confidence 01234666667776655544 357889999999998899999987 789999988643 2222111
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC---CCCCcceEEEEec--CeEEEEe
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH---DSLTHPFAIALFE--NHVYWTD 555 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~---~~l~~P~gla~~~--~~lY~td 555 (841)
..........|.||++| .+++||+++...++|.+++++|.....+.-.. .....+..++... +.+|++.
T Consensus 220 ~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 220 IPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp EEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred eeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 00111345679999999 47899999999999999999999887765321 1123455666632 5677764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.70 E-value=5.1e-16 Score=164.92 Aligned_cols=253 Identities=12% Similarity=0.143 Sum_probs=178.4
Q ss_pred ccEEEEeccccceeeecccccCCcceeEEEecC-------CCeEEEEEecCCcccceEEEEeC-----CCCCccceEEee
Q psy14257 239 FNVIALISSLKNTIALDFYYTPTANMVFWTDVI-------DDKIYNATLIGNSLSNIDVVVQT-----GLSTAEGLAVDW 306 (841)
Q Consensus 239 ~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~-------~~~I~~~~~~~~~~~~~~~~~~~-----~l~~p~giavD~ 306 (841)
..++.+..++..+.++.|+.+ ++ ||+++.. +++|+|++++++. .+.+.. ....|.||++|+
T Consensus 8 ~~~~~v~~~~~g~EGpa~d~d-G~--ly~~~~~~~~~~~~~g~I~r~d~~~~~----~~~~~~~~~~~~~g~P~Gl~~~~ 80 (314)
T d1pjxa_ 8 PLFTKVTEDIPGAEGPVFDKN-GD--FYIVAPEVEVNGKPAGEILRIDLKTGK----KTVICKPEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp CCCEEEECCCTTCEEEEECTT-SC--EEEEETTCEETTEECCEEEEECTTTCC----EEEEECCEETTEECCEEEEEECS
T ss_pred cceEEeecCCCCCeEeEEeCC-CC--EEEEECccccccccCCEEEEEECCCCc----EEEEECCccccCCCcceeEEEeC
Confidence 345667778888888888764 66 9998765 4679999887664 222211 123599999998
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccccc----CcCCCceEEEEccCCEEEEEeCC-------------
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTK----NIQWPSSLVIDYNQDILYWCDSH------------- 369 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~----~~~~P~glavD~~~~~lYwaD~~------------- 369 (841)
.++.+|+ ++. .++|.+++.+|.....+... .+..|+.+++|++ +.||++|..
T Consensus 81 dg~~l~v--ad~--------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~-G~lyvtd~~~~~~~~~~~~~~~ 149 (314)
T d1pjxa_ 81 DANQLFV--ADM--------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp SSSEEEE--EET--------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTS
T ss_pred CCCEEEE--EEC--------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCC-CCEEEecCccCcccccccceec
Confidence 7655555 332 24799999998865554332 4678999999976 799999863
Q ss_pred --CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc----ceEEEEecCCCcEEEEccCCc--e--EEEEe
Q psy14257 370 --LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG----KNLYWVESNLDQIEVAKLSGQ--F--RRTLI 439 (841)
Q Consensus 370 --~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~----~~LY~tD~~~~~I~v~~~~G~--~--~~~l~ 439 (841)
.++|++++.+|+..++.... ..+..+ +++..+ ..||++|..+++|+++++++. . .+++.
T Consensus 150 ~~~G~v~~~~~dg~~~~~~~~~---~~pNGi--------~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~ 218 (314)
T d1pjxa_ 150 EKFGSIYCFTTDGQMIQVDTAF---QFPNGI--------AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp SSCEEEEEECTTSCEEEEEEEE---SSEEEE--------EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred cCCceEEEEeecCceeEeeCCc---ceeeee--------EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE
Confidence 35799999999765544221 111111 121111 379999999999999887532 2 22222
Q ss_pred c---CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC
Q psy14257 440 A---GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516 (841)
Q Consensus 440 ~---~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~ 516 (841)
. .....|.||++|.. |.||+++++ .++|.+++.+|......+. .....|+++++.++.++||+++..++
T Consensus 219 ~~~~~~~~~pdGiavD~~-GnlyVa~~~--~g~I~~~dp~~g~~~~~i~-----~p~~~~t~~afg~d~~~lyVt~~~~g 290 (314)
T d1pjxa_ 219 HIPGTHEGGADGMDFDED-NNLLVANWG--SSHIEVFGPDGGQPKMRIR-----CPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp ECCCCSSCEEEEEEEBTT-CCEEEEEET--TTEEEEECTTCBSCSEEEE-----CSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred EccccccccceeeEEecC-CcEEEEEcC--CCEEEEEeCCCCEEEEEEE-----CCCCCEEEEEEeCCCCEEEEEECCCC
Confidence 2 22446999999965 889999998 7899999999766544444 45678999999987778999999999
Q ss_pred eEEEEEcCCCee
Q psy14257 517 SIHTVTYDGKDH 528 (841)
Q Consensus 517 ~I~~~~~dG~~~ 528 (841)
+|+++++.-..+
T Consensus 291 ~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 291 AVWKFEWQRNGK 302 (314)
T ss_dssp EEEEEECSSCBC
T ss_pred cEEEEECCCCCh
Confidence 999999875543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.68 E-value=1.9e-15 Score=160.95 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=150.6
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
.+||+++|+.+ +||| +| ...++|.|++++|.............|+||+++.+ ++||+++....
T Consensus 41 ~lEG~~~D~~G-~Ly~--~D-------~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~------ 103 (319)
T d2dg1a1 41 QLEGLNFDRQG-QLFL--LD-------VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDF------ 103 (319)
T ss_dssp CEEEEEECTTS-CEEE--EE-------TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTS------
T ss_pred CcEeCEECCCC-CEEE--EE-------CCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC-CCEEEEecCCC------
Confidence 56999999654 5554 44 34579999999998776666667778999999875 46666654211
Q ss_pred ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEec--CCCCCceeEEEcCCC
Q psy14257 378 VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA--GDMESPRAIALDPRF 455 (841)
Q Consensus 378 ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~--~~l~~P~giavd~~~ 455 (841)
.....|...+..+.....+.. .....|+++++++.
T Consensus 104 ------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~- 140 (319)
T d2dg1a1 104 ------------------------------------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK- 140 (319)
T ss_dssp ------------------------------------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT-
T ss_pred ------------------------------------------ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEec-
Confidence 012234444444443333332 23567999999986
Q ss_pred CeEEEEecCC----CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC--eeE
Q psy14257 456 GLLFWTDWDS----KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK--DHH 529 (841)
Q Consensus 456 g~Ly~td~~~----~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~--~~~ 529 (841)
|.||++|... ..+.|++++.+|...+.+.. .+..|+||+++++++.||++|...++|++++++.. ...
T Consensus 141 G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~------~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~ 214 (319)
T d2dg1a1 141 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 214 (319)
T ss_dssp SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred cceeecccccccccCcceeEEEecccceeEEEee------ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceec
Confidence 7899998652 24579999999987766654 57889999999988999999999999999988642 221
Q ss_pred E----EEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 530 V----VLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 530 ~----i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
. +.........|.||+++ +|+||++++..++|.++++ .|+.+..|.
T Consensus 215 ~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~ 265 (319)
T d2dg1a1 215 PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL 265 (319)
T ss_dssp EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred cccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence 1 11122234569999995 5899999999999999997 576555443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.67 E-value=2e-15 Score=157.56 Aligned_cols=212 Identities=15% Similarity=0.240 Sum_probs=159.5
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC--CccccccceEEE-EecCCC
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP--EDNLWIGKNLYW-VESNLD 423 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~--~avdw~~~~LY~-tD~~~~ 423 (841)
++.+|.|||+|++ ++||++|..+++|++++.+|...+.+-.. ...... ...| ++++...+..+| .+..++
T Consensus 21 ~f~~P~gvavd~d-g~i~VaD~~n~rI~v~d~~G~~~~~~~~~---~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (279)
T d1q7fa_ 21 QFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGEC---GKRDSQ---LLYPNRVAVVRNSGDIIVTERSPTH 93 (279)
T ss_dssp CBSCEEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCB---SSSTTC---BSSEEEEEEETTTTEEEEEECGGGC
T ss_pred eECCccEEEEcCC-CCEEEEECCCCEEEEEeCCCCEEEEeccc---CCCccc---ccccccccccccccccceeccCCcc
Confidence 5889999999974 67999999999999999999766554211 000000 0011 122223344444 566778
Q ss_pred cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 424 QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 424 ~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
+|.+.+.+|.....+....+..|.++|+++. |.+|+++.. ..++.+.+.+|+....+.. ...+..|.++++|
T Consensus 94 ~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~-G~i~v~~~~--~~~~~~~~~~g~~~~~~g~----~~~~~~~~~i~~d- 165 (279)
T d1q7fa_ 94 QIQIYNQYGQFVRKFGATILQHPRGVTVDNK-GRIIVVECK--VMRVIIFDQNGNVLHKFGC----SKHLEFPNGVVVN- 165 (279)
T ss_dssp EEEEECTTSCEEEEECTTTCSCEEEEEECTT-SCEEEEETT--TTEEEEECTTSCEEEEEEC----TTTCSSEEEEEEC-
T ss_pred ccccccccccceeecCCCcccccceeccccC-CcEEEEeec--cceeeEeccCCceeecccc----cccccccceeeec-
Confidence 9999999999988887777899999999975 889999987 7899999999986655543 1568899999999
Q ss_pred cCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCC-eEEEEeccCCcceEEE
Q psy14257 504 QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTN-SVIRANKWNGSDVTLI 575 (841)
Q Consensus 504 ~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~-~i~~~~~~~g~~~~~i 575 (841)
.+++||++|...++|++++.+|+...++... +.+.+|.||++. +|+||++|+.++ +|...++ +|+-+..+
T Consensus 166 ~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~-g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~ 237 (279)
T d1q7fa_ 166 DKQEIFISDNRAHCVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL 237 (279)
T ss_dssp SSSEEEEEEGGGTEEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEE
T ss_pred cceeEEeeeccccceeeeecCCceeeeeccc-ccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEE
Confidence 4689999999999999999999988777543 457899999995 589999998765 4655554 46544444
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.51 E-value=1e-12 Score=137.64 Aligned_cols=228 Identities=13% Similarity=0.113 Sum_probs=153.1
Q ss_pred eeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEE
Q psy14257 252 IALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIE 331 (841)
Q Consensus 252 ~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~ 331 (841)
.+.-|+.+++. |||+|...++|+|.+++++. ..++... ..|.+++.+..+ ++++ +. ..+|.
T Consensus 21 Egp~wd~~~~~--l~wvDi~~~~I~r~d~~~g~----~~~~~~~-~~~~~i~~~~dg-~l~v--a~---------~~gl~ 81 (295)
T d2ghsa1 21 EGPTFDPASGT--AWWFNILERELHELHLASGR----KTVHALP-FMGSALAKISDS-KQLI--AS---------DDGLF 81 (295)
T ss_dssp EEEEEETTTTE--EEEEEGGGTEEEEEETTTTE----EEEEECS-SCEEEEEEEETT-EEEE--EE---------TTEEE
T ss_pred eCCeEECCCCE--EEEEECCCCEEEEEECCCCe----EEEEECC-CCcEEEEEecCC-CEEE--EE---------eCccE
Confidence 45568887777 99999999999999988764 2333322 367788887532 3333 22 13688
Q ss_pred EEccCCCcccccccc----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 332 KAGMHGENRSPLVTK----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 332 ~~~~dG~~~~~l~~~----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
++++++...+.+... ...+|+.+++|+. ++||+++...... .
T Consensus 82 ~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~-G~iw~~~~~~~~~----------------------~----------- 127 (295)
T d2ghsa1 82 LRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAE----------------------T----------- 127 (295)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCC----------------------T-----------
T ss_pred EeecccceeeEEeeeecCCCcccceeeEECCC-CCEEEEecccccc----------------------c-----------
Confidence 888776665555432 3456888888875 3466655321000 0
Q ss_pred cccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC------cE
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH------RS 481 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~------~~ 481 (841)
-.+.+|..+ +|+.... . .++..|+|+++++....|||+|.. ..+|+++++|+.. +.
T Consensus 128 ---~~g~l~~~~-----------~g~~~~~-~-~~~~~~Ng~~~s~d~~~l~~~dt~--~~~I~~~~~d~~~~~~~~~~~ 189 (295)
T d2ghsa1 128 ---GAGSIYHVA-----------KGKVTKL-F-ADISIPNSICFSPDGTTGYFVDTK--VNRLMRVPLDARTGLPTGKAE 189 (295)
T ss_dssp ---TCEEEEEEE-----------TTEEEEE-E-EEESSEEEEEECTTSCEEEEEETT--TCEEEEEEBCTTTCCBSSCCE
T ss_pred ---cceeEeeec-----------CCcEEEE-e-eccCCcceeeecCCCceEEEeecc--cceeeEeeecccccccccceE
Confidence 002333221 2332222 2 356789999999999999999987 7899999987532 33
Q ss_pred EEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec---CeEEEEeCC
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE---NHVYWTDWR 557 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~---~~lY~td~~ 557 (841)
.++.. ......|.|+++| .+++||++....++|.+++++|.....+.-. ..+|..+++-+ +.||+|...
T Consensus 190 ~~~~~---~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP---~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 190 VFIDS---TGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIARYEVP---GKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEEEC---TTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEEEEECS---CSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEecc---CcccccccceEEc-CCCCEEeeeeCCCceEEecCCCcEeeEecCC---CCceEEEEEeCCCCCEEEEEECC
Confidence 44431 1344579999999 5789999999899999999999988777543 35788888853 679999653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.47 E-value=4.1e-10 Score=116.01 Aligned_cols=272 Identities=14% Similarity=0.169 Sum_probs=177.3
Q ss_pred ceEEEEecCCCcEEEEccCCc-eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQ-FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
..+|+++...+.|.+.+++.. ..+++ ..+ ..|++|+++|++.+||++... .++|...++........+.
T Consensus 2 ~~~yV~~~~~~~v~v~D~~t~~~~~~i-~~g-~~p~~va~spdG~~l~v~~~~--~~~i~v~d~~t~~~~~~~~------ 71 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVP------ 71 (301)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEE------
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEE-ECC-CCceEEEEeCCCCEEEEEECC--CCEEEEEECCCCceeeeee------
Confidence 468999999999999998654 34443 322 579999999998899999977 6789999986443333233
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCC
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g 569 (841)
....|.+++++..+..+|++......+...+.........+.. ...|..+++. +..++++......+...+..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~ 148 (301)
T d1l0qa2 72 AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK 148 (301)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccccccccccccccccccccccccceeeecccccceeeeeccc---cccceEEEeecCCCeeeeeeccccceeeeecccc
Confidence 3457999999988889999888888888888776544333332 2344555542 2334444333222221111110
Q ss_pred cceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEE
Q psy14257 570 SDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRG 649 (841)
Q Consensus 570 ~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~ 649 (841)
. .+..
T Consensus 149 ~---------------------------------------------------------------------------~~~~ 153 (301)
T d1l0qa2 149 A---------------------------------------------------------------------------VINT 153 (301)
T ss_dssp E---------------------------------------------------------------------------EEEE
T ss_pred c---------------------------------------------------------------------------eeee
Confidence 0 0000
Q ss_pred EecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceE
Q psy14257 650 VDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQI 729 (841)
Q Consensus 650 ~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (841)
+.....+..+++.+..+.+|++....+.+......... .
T Consensus 154 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~ 192 (301)
T d1l0qa2 154 ---------------VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--------------------------V 192 (301)
T ss_dssp ---------------EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------------------------E
T ss_pred ---------------cccCCCceEEEeeccccceeeeccccccccccccccee--------------------------e
Confidence 01112355677788888888888666666666554433 1
Q ss_pred EEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecC
Q psy14257 730 QLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT 809 (841)
Q Consensus 730 ~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~ 809 (841)
...+. ....|.++++++.++.+|++..+...++|.++++........+.. ...|.+|+++|...+||++...
T Consensus 193 ~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-------~~~~~~va~spdg~~l~va~~~ 264 (301)
T d1l0qa2 193 IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-------GPDPAGIAVTPDGKKVYVALSF 264 (301)
T ss_dssp EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-------CSSEEEEEECTTSSEEEEEETT
T ss_pred eeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-------CCCEEEEEEeCCCCEEEEEECC
Confidence 12222 234689999999999999986666667899998865433222332 3589999999998899999987
Q ss_pred CCcceEEEEecCCC
Q psy14257 810 KQVVTIEMAFMDGT 823 (841)
Q Consensus 810 ~~~~~I~~~~~dG~ 823 (841)
.+ +|...++.-.
T Consensus 265 ~~--~i~v~D~~t~ 276 (301)
T d1l0qa2 265 CN--TVSVIDTATN 276 (301)
T ss_dssp TT--EEEEEETTTT
T ss_pred CC--eEEEEECCCC
Confidence 64 7887776433
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.46 E-value=1.8e-11 Score=128.38 Aligned_cols=240 Identities=13% Similarity=0.084 Sum_probs=166.8
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
..|.+||++|+ |.||+++.. .++|+|.+.+|... .+.. ....|+||++++ +++||+++...+.+..+++
T Consensus 28 ~~~e~iAv~pd-G~l~vt~~~--~~~I~~i~p~g~~~-~~~~------~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~ 96 (302)
T d2p4oa1 28 TFLENLASAPD-GTIFVTNHE--VGEIVSITPDGNQQ-IHAT------VEGKVSGLAFTS-NGDLVATGWNADSIPVVSL 96 (302)
T ss_dssp CCEEEEEECTT-SCEEEEETT--TTEEEEECTTCCEE-EEEE------CSSEEEEEEECT-TSCEEEEEECTTSCEEEEE
T ss_pred CCcCCEEECCC-CCEEEEeCC--CCEEEEEeCCCCEE-EEEc------CCCCcceEEEcC-CCCeEEEecCCceEEEEEe
Confidence 35889999986 889999988 78999999998743 3333 346899999996 5789999988888888877
Q ss_pred CCC--eeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCC
Q psy14257 524 DGK--DHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNG 600 (841)
Q Consensus 524 dG~--~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng 600 (841)
++. ....+... .....|.++++ .++.+|+++...+.+++++..++..........
T Consensus 97 ~~~~~~~~~~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~--------------------- 154 (302)
T d2p4oa1 97 VKSDGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM--------------------- 154 (302)
T ss_dssp ECTTSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG---------------------
T ss_pred cccccceeecccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCc---------------------
Confidence 653 22233322 23567899998 468999999999999888765443221111000
Q ss_pred CCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCC
Q psy14257 601 NCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAAN 680 (841)
Q Consensus 601 ~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 680 (841)
.. . .........+.+|++| .
T Consensus 155 ----------------------------------------------~~------~------~~~~~~~~~~ngi~~~--~ 174 (302)
T d2p4oa1 155 ----------------------------------------------LA------R------SNSESVFPAANGLKRF--G 174 (302)
T ss_dssp ----------------------------------------------GS------C------SSTTCCSCSEEEEEEE--T
T ss_pred ----------------------------------------------cc------e------eeccCccccccccccc--C
Confidence 00 0 0000112344567776 5
Q ss_pred CEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCC
Q psy14257 681 KKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPT 760 (841)
Q Consensus 681 ~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~ 760 (841)
+.+||++...++|+|+.+++.... ...+.+ .....|.|||+|..+ +||++ ...
T Consensus 175 ~~l~~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~--~~~~~pdgia~d~dG-~l~va--~~~ 227 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVDSTDKP----------------------GEPEIF--VEQTNIDDFAFDVEG-NLYGA--THI 227 (302)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCB----------------------CCCEEE--EESCCCSSEEEBTTC-CEEEE--CBT
T ss_pred CceeeecCCCCeEEeccccccccc----------------------cccccc--cCCCCCcceEECCCC-CEEEE--EcC
Confidence 799999999999999998775400 001222 235679999999876 79999 456
Q ss_pred CCeEEEEecCCcceEEEE-c-CCCCCCCcCCCceEEEEe---CCCCeEEEEecCC
Q psy14257 761 QSKIVVCNLEGEYQTTIL-S-NESNDTSTLSKISSIAVW---PVKGKMFWSNVTK 810 (841)
Q Consensus 761 ~~~I~v~~l~g~~~~~~~-~-~~~~~~~~l~~p~~iavd---~~~g~lyw~d~~~ 810 (841)
.++|.+++.+|+...+.- . . +..|.++|+. +..+.||.+..+.
T Consensus 228 ~~~V~~i~p~G~~~~~~~~~~~-------~~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 228 YNSVVRIAPDRSTTIIAQAEQG-------VIGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp TCCEEEECTTCCEEEEECGGGT-------CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCcEEEECCCCCEEEEEecCCC-------CCCceEEEEcCCCCCCCEEEEECCCC
Confidence 788999999998665443 2 3 7889999995 4557899987654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.46 E-value=5.9e-12 Score=132.22 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=154.5
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
+.++.++.+ ++ ||++|...++|++.+.++. .+. +......|.+||+++.+ ++| .++++. ++|
T Consensus 30 ~e~iAv~pd-G~--l~vt~~~~~~I~~i~p~g~----~~~-~~~~~~~~~gla~~~dG-~l~--v~~~~~-------~~~ 91 (302)
T d2p4oa1 30 LENLASAPD-GT--IFVTNHEVGEIVSITPDGN----QQI-HATVEGKVSGLAFTSNG-DLV--ATGWNA-------DSI 91 (302)
T ss_dssp EEEEEECTT-SC--EEEEETTTTEEEEECTTCC----EEE-EEECSSEEEEEEECTTS-CEE--EEEECT-------TSC
T ss_pred cCCEEECCC-CC--EEEEeCCCCEEEEEeCCCC----EEE-EEcCCCCcceEEEcCCC-CeE--EEecCC-------ceE
Confidence 334445443 66 9999999999999987653 223 33445689999999754 444 455443 355
Q ss_pred EEEccC---CCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 331 EKAGMH---GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 331 ~~~~~d---G~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
.+..++ ++............|+++++|.. +++|+++...+.|+++++++....+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~-------------------- 150 (302)
T d2p4oa1 92 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWL-------------------- 150 (302)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEE--------------------
T ss_pred EEEEecccccceeeccccCCccccceeEEccC-CCEEeeccccccceeeeccCCcceeEe--------------------
Confidence 555544 33333333446778999999865 678888887777777776654322111
Q ss_pred cccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD 487 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~ 487 (841)
.+ +..........+..|.+|+.+ .++||+++.. ..+|+|++.++..........
T Consensus 151 ----------~~------------~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~ 204 (302)
T d2p4oa1 151 ----------EH------------PMLARSNSESVFPAANGLKRF--GNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIF 204 (302)
T ss_dssp ----------EC------------GGGSCSSTTCCSCSEEEEEEE--TTEEEEEETT--TTEEEEEEBCTTSCBCCCEEE
T ss_pred ----------cC------------CccceeeccCccccccccccc--CCceeeecCC--CCeEEeccccccccccccccc
Confidence 11 000011122345688999987 4699999988 789999998765322111000
Q ss_pred ccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-----cCeEEEEeCC
Q psy14257 488 LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-----ENHVYWTDWR 557 (841)
Q Consensus 488 ~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-----~~~lY~td~~ 557 (841)
.....|.||++|. +++||+++...++|.+++++|..... ......+..|.++++. ...||++...
T Consensus 205 ---~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~-~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 205 ---VEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTII-AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ---EESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEE-ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ---cCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEE-EecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 1345799999995 57899999989999999999875543 3322346789999983 2579998654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.43 E-value=3.7e-12 Score=133.36 Aligned_cols=208 Identities=13% Similarity=0.162 Sum_probs=147.1
Q ss_pred ccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCc
Q psy14257 345 TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQ 424 (841)
Q Consensus 345 ~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~ 424 (841)
..+....+|..+|.+++.|||+|...++|++++++++..+++...... ..+ +.+ ..++|+++.. +.
T Consensus 14 ~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~---~~i--------~~~-~dg~l~va~~--~g 79 (295)
T d2ghsa1 14 ETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMG---SAL--------AKI-SDSKQLIASD--DG 79 (295)
T ss_dssp CSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCE---EEE--------EEE-ETTEEEEEET--TE
T ss_pred CCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCc---EEE--------EEe-cCCCEEEEEe--Cc
Confidence 334445579999999999999999999999999998876654221110 001 111 1267887753 57
Q ss_pred EEEEccCCceEEEEecC----CCCCceeEEEcCCCCeEEEEecCC----CCCeEEEecCCCCCcEEEEEecccCCCCCCc
Q psy14257 425 IEVAKLSGQFRRTLIAG----DMESPRAIALDPRFGLLFWTDWDS----KAPRIERCSMSGEHRSVIVRVDLLTSRGAWP 496 (841)
Q Consensus 425 I~v~~~~G~~~~~l~~~----~l~~P~giavd~~~g~Ly~td~~~----~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P 496 (841)
|.++++++...+.+... ....|+++++|+. |.||+++... ....+++.. +|+.. .+. ..+..|
T Consensus 80 l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~-G~iw~~~~~~~~~~~~g~l~~~~-~g~~~-~~~------~~~~~~ 150 (295)
T d2ghsa1 80 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGKVT-KLF------ADISIP 150 (295)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTEEE-EEE------EEESSE
T ss_pred cEEeecccceeeEEeeeecCCCcccceeeEECCC-CCEEEEeccccccccceeEeeec-CCcEE-EEe------eccCCc
Confidence 88898886655555432 2346899999986 7888887432 234567665 44333 232 257789
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCCC------eeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCC
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDGK------DHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG~------~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g 569 (841)
+|+++++.++.|||+|...++|+++++|+. .+..+....+....|.|++++ +|+||++.|..++|.++++ .|
T Consensus 151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G 229 (295)
T d2ghsa1 151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG 229 (295)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC
T ss_pred ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CC
Confidence 999999999999999999999999998753 233444433345679999995 5899999999999999997 46
Q ss_pred cceEEEe
Q psy14257 570 SDVTLIQ 576 (841)
Q Consensus 570 ~~~~~i~ 576 (841)
+....+.
T Consensus 230 ~~~~~i~ 236 (295)
T d2ghsa1 230 NHIARYE 236 (295)
T ss_dssp CEEEEEE
T ss_pred cEeeEec
Confidence 6555554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.41 E-value=1.4e-10 Score=119.75 Aligned_cols=276 Identities=14% Similarity=0.135 Sum_probs=188.3
Q ss_pred eeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-cccc
Q psy14257 264 MVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE-NRSP 342 (841)
Q Consensus 264 ~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~-~~~~ 342 (841)
.+|+++..++.|.+.++..+. ....+..+ ..|.++|+++.++.+|+ +.. .+++|..+++... ....
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~---~~~~i~~g-~~p~~va~spdG~~l~v--~~~-------~~~~i~v~d~~t~~~~~~ 69 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNK---VTATIPVG-SNPMGAVISPDGTKVYV--ANA-------HSNDVSIIDTATNNVIAT 69 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTE---EEEEEECS-SSEEEEEECTTSSEEEE--EEG-------GGTEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCe---EEEEEECC-CCceEEEEeCCCCEEEE--EEC-------CCCEEEEEECCCCceeee
Confidence 489999999999999887654 22223333 47999999987755554 433 3458999987643 3322
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL 422 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~ 422 (841)
+ .....|.+++++..++.+|++......+...++........+.... .+. ..++...+..++++....
T Consensus 70 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~dg~~~~~~~~~~ 137 (301)
T d1l0qa2 70 V--PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--SPL--------GLALSPDGKKLYVTNNGD 137 (301)
T ss_dssp E--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEE--------EEEECTTSSEEEEEETTT
T ss_pred e--eccccccccccccccccccccccccceeeecccccceeeeeccccc--cce--------EEEeecCCCeeeeeeccc
Confidence 2 2345799999999999999999998888888876654333322110 000 012233346777777777
Q ss_pred CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEe
Q psy14257 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502 (841)
Q Consensus 423 ~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD 502 (841)
..+.+.+.........+. ....|..+++++..+++|++... ...+............... ....|.+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 208 (301)
T d1l0qa2 138 KTVSVINTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNSVIDTVK------VEAAPSGIAVN 208 (301)
T ss_dssp TEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEE------CSSEEEEEEEC
T ss_pred cceeeeeccccceeeecc-cCCCceEEEeeccccceeeeccc--ccccccccccceeeeeccc------ccCCcceeecc
Confidence 777777766544333332 34679999999999999999876 5566666655544433333 34679999999
Q ss_pred ccCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 503 YQLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 503 ~~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
+.+..+|++.. ..+.|..+++........+.. ...|.+|++. +.+||++....+.|..++..+|+.+..+.
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccceeeeeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99999998764 446899999875544332322 2578999994 45799999999999999988887665553
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=7.1e-10 Score=116.14 Aligned_cols=307 Identities=10% Similarity=0.099 Sum_probs=179.9
Q ss_pred ceEEEEecCCCcEEEEccCCce-EE--EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC--cEEEEEec
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQF-RR--TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH--RSVIVRVD 487 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~-~~--~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~--~~~i~~~~ 487 (841)
..+|++....++|.+.+++... .+ ..+. .-..|++||++|++.+||++... ...|...+++... .+.+...
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~-~~~~v~~la~spDG~~L~v~~~~--d~~i~~~~i~~~~~~~~~~~~~- 79 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAES- 79 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEE-
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEEc-CCCCEeEEEEeCCCCEEEEEECC--CCeEEEEEEeCCCCcEEEeeec-
Confidence 6799999999999999986432 11 1222 23689999999999999999876 5677776665432 2333221
Q ss_pred ccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEe
Q psy14257 488 LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 488 ~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~ 565 (841)
.....|.+|++++++++||+++.....|...+.+................|.++++ .+.++|+++.....|...+
T Consensus 80 ---~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~ 156 (333)
T d1ri6a_ 80 ---ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT 156 (333)
T ss_dssp ---ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ---ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEE
Confidence 24457999999999999999998888888888776655444332222346777777 4578999998888887776
Q ss_pred ccCCcceEEEecc-cCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee--
Q psy14257 566 KWNGSDVTLIQRT-LTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-- 642 (841)
Q Consensus 566 ~~~g~~~~~i~~~-~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-- 642 (841)
............. ... +.+..| ..+ .+..++ .+++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~-------~~g~~p----------~~i---------------~~~~~~--------~~~~~~~~ 196 (333)
T d1ri6a_ 157 VSDDGHLVAQDPAEVTT-------VEGAGP----------RHM---------------VFHPNE--------QYAYCVNE 196 (333)
T ss_dssp ECTTSCEEEEEEEEEEC-------STTCCE----------EEE---------------EECTTS--------SEEEEEET
T ss_pred eccCCcceeeeceeeee-------ecCCCc----------cEE---------------EEeccc--------eeEEeecc
Confidence 5544433322111 000 000000 000 000000 001110
Q ss_pred cCCeEEEEecCCCCccc-----ccee--ecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeec
Q psy14257 643 RPREIRGVDLEHPYYHT-----IPTI--SIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYL 715 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~-----~~~~--~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 715 (841)
................. ...+ .......+.++++++..+.+|.+....+.+....++......
T Consensus 197 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 266 (333)
T d1ri6a_ 197 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL---------- 266 (333)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE----------
T ss_pred ccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE----------
Confidence 11111111111110000 0000 112334567888999999999998877777666654432000
Q ss_pred ccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcc---eEE-EEcCCCCCCCcCCCc
Q psy14257 716 TPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY---QTT-ILSNESNDTSTLSKI 791 (841)
Q Consensus 716 ~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~---~~~-~~~~~~~~~~~l~~p 791 (841)
...... .....|.+||+++.++.||++ +...++|.++++|... ..+ -+.. -..|
T Consensus 267 ------------~~~~~~-~~~~~p~~~a~spDGk~l~va--~~~~~~v~v~~id~~tG~l~~~~~~~~-------g~~p 324 (333)
T d1ri6a_ 267 ------------SKEGFQ-PTETQPRGFNVDHSGKYLIAA--GQKSHHISVYEIVGEQGLLHEKGRYAV-------GQGP 324 (333)
T ss_dssp ------------EEEEEE-ECSSSCCCEEECTTSSEEEEE--CTTTCEEEEEEEETTTTEEEEEEEEEC-------SSSC
T ss_pred ------------EEEEEe-CCCCCeeEEEEeCCCCEEEEE--ECCCCeEEEEEEECCCCcEEEEEeccC-------CCCC
Confidence 011112 234579999999999999999 4567889998876542 211 1222 2579
Q ss_pred eEEEEeC
Q psy14257 792 SSIAVWP 798 (841)
Q Consensus 792 ~~iavd~ 798 (841)
..|+|..
T Consensus 325 ~~v~~~~ 331 (333)
T d1ri6a_ 325 MWVVVNA 331 (333)
T ss_dssp CEEEEEE
T ss_pred cEEEEEc
Confidence 9999863
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.7e-09 Score=113.22 Aligned_cols=288 Identities=10% Similarity=0.065 Sum_probs=185.6
Q ss_pred eEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccc--c
Q psy14257 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRS--P 342 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~--~ 342 (841)
+|++....++|+..+++..........+.. -..|.+||+.|.++.||+ + ...+++|..++++..... .
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~-~~~v~~la~spDG~~L~v--~-------~~~d~~i~~~~i~~~~~~~~~ 75 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDV-PGQVQPMVVSPDKRYLYV--G-------VRPEFRVLAYRIAPDDGALTF 75 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSCCCCEEECTTSSEEEE--E-------ETTTTEEEEEEECTTTCCEEE
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcC-CCCEeEEEEeCCCCEEEE--E-------ECCCCeEEEEEEeCCCCcEEE
Confidence 899999999999998865431011122333 357899999998866765 2 234568888777644332 2
Q ss_pred ccc-cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC
Q psy14257 343 LVT-KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN 421 (841)
Q Consensus 343 l~~-~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~ 421 (841)
... .....|.+|++++++++||+++.....|.....+............. ... ....+++..+..+|+++..
T Consensus 76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~------~~~v~~s~d~~~~~~~~~~ 148 (333)
T d1ri6a_ 76 AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDG------CHSANISPDNRTLWVPALK 148 (333)
T ss_dssp EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTT------BCCCEECTTSSEEEEEEGG
T ss_pred eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCC-Ccc------ceEEEeeecceeeeccccc
Confidence 222 24457999999999999999999999998888877655444332111 111 1123455566889999988
Q ss_pred CCcEEEEccCCceEE------EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc---cCCC
Q psy14257 422 LDQIEVAKLSGQFRR------TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL---LTSR 492 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~------~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~---~~~~ 492 (841)
...|.+++....... .........|+.|++++...++|++........+.....+............ ....
T Consensus 149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (333)
T d1ri6a_ 149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228 (333)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCc
Confidence 888888776543211 1112234689999999999999999876323345554444443333322111 1134
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEE--EEec
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVI--RANK 566 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~--~~~~ 566 (841)
...|.++++++.++++|.+....+.+..+.++ +......... .....|.+|++. +.+||++....+.|. +++.
T Consensus 229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe-CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 56788999999999999999888877766554 3333332221 123578899984 567999987777654 5676
Q ss_pred cCCc
Q psy14257 567 WNGS 570 (841)
Q Consensus 567 ~~g~ 570 (841)
.+|+
T Consensus 308 ~tG~ 311 (333)
T d1ri6a_ 308 EQGL 311 (333)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 6665
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.13 E-value=3.9e-09 Score=113.39 Aligned_cols=272 Identities=12% Similarity=0.007 Sum_probs=157.5
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEE-EEeCCCCCccceEEeeecCceeEEEeeecCCC-------
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDV-VVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSP------- 322 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~-~~~~~l~~p~giavD~~~~~~y~~~td~~~~~------- 322 (841)
+..|.++.+.+. ||.++. +.+....++... .... .....-..|..+++++.++.+|++-...+..-
T Consensus 42 ~s~la~s~d~~~--ly~~~~--~~~~~~~i~~~~--~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 42 ISWMTFDHERKN--IYGAAM--KKWSSFAVKSPT--EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CSEEEECTTSSE--EEEEEB--TEEEEEEEEETT--EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCEEEEcCCCCE--EEEEeC--CcEEEEEEeCCC--CeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 445666665444 999865 455555444222 1111 11223357999999988777777654332110
Q ss_pred CCCCCCCEEEEccCCCcccccc---ccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccc
Q psy14257 323 SNSSDGGIEKAGMHGENRSPLV---TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVG 399 (841)
Q Consensus 323 ~~~~~~~I~~~~~dG~~~~~l~---~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~ 399 (841)
.+...+.+......+..-.... ...-..|.++++++++++||++|...++|++++.+................. .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g-~- 193 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG-D- 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT-C-
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC-C-
Confidence 0111122333333322111111 1123357899999999999999999999999987655433322211111100 0
Q ss_pred cCCCCCCccccccceEEEEecCCCcEEEEccCCceE---EEEe-----c-----------CCCCCceeEEEcCCCCeEEE
Q psy14257 400 IPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFR---RTLI-----A-----------GDMESPRAIALDPRFGLLFW 460 (841)
Q Consensus 400 i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~---~~l~-----~-----------~~l~~P~giavd~~~g~Ly~ 460 (841)
..+.++++..++.+|++....++|.+++++.... .... . .....|.+|+++|...+||+
T Consensus 194 --gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv 271 (365)
T d1jofa_ 194 --HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp --CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred --ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence 0011244555688999999999999999875421 1111 0 01124678999999999999
Q ss_pred EecCCC---CCeEEEecC--CCCCcEEEEEecccCCCCCCceeEEEec-cCCEEEEEeCCCCeEEEEEcCCCeeEEEEc
Q psy14257 461 TDWDSK---APRIERCSM--SGEHRSVIVRVDLLTSRGAWPNGLTLDY-QLTRIYWIDAKSDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 461 td~~~~---~~~I~r~~l--dG~~~~~i~~~~~~~~~~~~P~glalD~-~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~ 533 (841)
+..+.. ...|..+.+ +|...+..... .......+|.+|++++ .+++||+++...+.|..++.++.....+..
T Consensus 272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~ 349 (365)
T d1jofa_ 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVAR 349 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEE
T ss_pred EcccCCCccceEEEEEEecCCCceeeEeEee-EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEE
Confidence 986532 223544444 44432222111 0113457899999997 567899999999999999888876655543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.11 E-value=1.1e-08 Score=109.92 Aligned_cols=282 Identities=11% Similarity=-0.003 Sum_probs=164.2
Q ss_pred CCeEEEEEecCCc--ccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEc--cCCCccccccccC
Q psy14257 272 DDKIYNATLIGNS--LSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAG--MHGENRSPLVTKN 347 (841)
Q Consensus 272 ~~~I~~~~~~~~~--~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~--~dG~~~~~l~~~~ 347 (841)
.+.|+++.++..+ +...+.........|..||+++.++.+|. +.++ ++..+. .+++.........
T Consensus 13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~--~~~~---------~~~~~~i~~~~~~~~~~~~~~ 81 (365)
T d1jofa_ 13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYG--AAMK---------KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEE--EEBT---------EEEEEEEEETTEEEEEEEEEC
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEE--EeCC---------cEEEEEEeCCCCeEEEeeecC
Confidence 3457666666433 11111222223445678999987766665 3332 444444 4444333322333
Q ss_pred cCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCcc-EEEEeeeeecCC-------CccccCCCCCCccccccceEEE
Q psy14257 348 IQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSER-TVSFNLEVLGSD-------SRVGIPNCRPEDNLWIGKNLYW 417 (841)
Q Consensus 348 ~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~-~~~~~~~~~~~~-------~~~~i~~~~~~avdw~~~~LY~ 417 (841)
-..|..++++..++.+|++.. ..+.|..+.+..... ..++........ ..-.-+..+.++++..++.||+
T Consensus 82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v 161 (365)
T d1jofa_ 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEE
Confidence 457999999999999998765 456676665532211 111111000000 0000001112456777899999
Q ss_pred EecCCCcEEEEccCCc--eEE--EE-ecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec---cc
Q psy14257 418 VESNLDQIEVAKLSGQ--FRR--TL-IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD---LL 489 (841)
Q Consensus 418 tD~~~~~I~v~~~~G~--~~~--~l-~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~---~~ 489 (841)
+|.+.++|.+++.+.. ... .+ ....-..|++|+++|...++|++... .++|...+++......+.... +.
T Consensus 162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~--~~~V~v~~~~~~~~~~~~~~~~~~~~ 239 (365)
T d1jofa_ 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC--CCEEEEEEecCCCceEEEEeeeeccc
Confidence 9999999999876533 221 11 11223689999999999999999977 788888888765433222111 00
Q ss_pred C-----------CCCCCceeEEEeccCCEEEEEeCCCC-----eEEEEEcC--CCeeE--EEEcCCCCCCcceEEEEe--
Q psy14257 490 T-----------SRGAWPNGLTLDYQLTRIYWIDAKSD-----SIHTVTYD--GKDHH--VVLSNHDSLTHPFAIALF-- 547 (841)
Q Consensus 490 ~-----------~~~~~P~glalD~~~~~LYw~d~~~~-----~I~~~~~d--G~~~~--~i~~~~~~l~~P~gla~~-- 547 (841)
. ....+|..|++++.+++||++....+ .|..+..+ |...+ .+........+|.+|++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~ 319 (365)
T d1jofa_ 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence 0 11235778999999999999974332 36665554 33222 222222234689999984
Q ss_pred -cCeEEEEeCCCCeEEEEec
Q psy14257 548 -ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 548 -~~~lY~td~~~~~i~~~~~ 566 (841)
+.+||+++...+.|..++.
T Consensus 320 ~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 320 SDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEE
Confidence 4679999999998776543
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.1e-10 Score=79.61 Aligned_cols=38 Identities=47% Similarity=1.096 Sum_probs=35.0
Q ss_pred CCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.+|.+++|+|..+++|||..|+|||..||. |+|||.+|
T Consensus 2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~--DgsDE~~C 39 (42)
T d1cr8a_ 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCM--DSSDEKSC 39 (42)
T ss_dssp CCSSTTCEECTTTCCEECGGGSSSSSCCSS--SSTTTTTC
T ss_pred CCCCCCceEcCCCCEEccchhcCCCcCcCC--CcchhccC
Confidence 579999999976889999999999999999 99999876
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.3e-10 Score=78.88 Aligned_cols=38 Identities=47% Similarity=1.120 Sum_probs=34.3
Q ss_pred CCCCCCCcccCC-CCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNE-TLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~-~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.+|.+++|+|.. +++|||..|+|||..||. |||||.+|
T Consensus 3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~--DgsDE~~C 41 (41)
T d1f5ya2 3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD--NGSDEQGC 41 (41)
T ss_dssp TTCCSSCEECCSSCCCEECGGGTTCSCCCSS--SCTTTTTC
T ss_pred cccCCCceECCCCCCCCccchhcCCCcCcCc--CcccccCC
Confidence 579999999964 578999999999999999 99999876
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.6e-10 Score=78.93 Aligned_cols=37 Identities=38% Similarity=0.959 Sum_probs=34.0
Q ss_pred CCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
++|.+++|+|. +++|||..|+|||..||. |||||.+|
T Consensus 1 rtC~~~~f~C~-~g~CI~~~~~CDg~~DC~--DgsDE~~C 37 (39)
T d2fcwb1 1 KTCSQAEFRCH-DGKCISRQFVCDSDRDCL--DGSDEASC 37 (39)
T ss_dssp CCCCTTEEECT-TSCEEEGGGTTSSSCCST--TCTTTTTH
T ss_pred CcCCCCCEEcC-CCCEEcchhcCcCcCcCc--CCchhcCC
Confidence 47899999997 899999999999999999 99999776
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.2e-10 Score=77.84 Aligned_cols=36 Identities=39% Similarity=0.805 Sum_probs=33.7
Q ss_pred CCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 31 ~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
+|.+++|+|. +++|||..|+|||..||. |+|||.+|
T Consensus 2 sC~~~~f~C~-~g~CI~~~~~CDg~~DC~--DgsDE~~C 37 (39)
T d1f8za_ 2 TCRPDEFQCS-DGNCIHGSRQCDREYDCK--DMSDEVGC 37 (39)
T ss_dssp CCCTTEEECS-SSCEEETTTSSSCCCCST--TSGGGSSS
T ss_pred CCCCCceEeC-CCCeEChhhcCCCCCcCC--CCchhccC
Confidence 6899999998 889999999999999999 99999876
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=4.8e-10 Score=81.05 Aligned_cols=41 Identities=32% Similarity=0.721 Sum_probs=36.4
Q ss_pred cCCCCCCCCCCccccccCCC-----CceeeeCCCCceeecCCCccc
Q psy14257 592 KSPCEMNNGNCSHLCLIGMN-----GTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 592 ~n~C~~~ng~Cs~lC~~~~~-----~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
-|.|..+||||+|+|++.|. ++|+|+||.||.|.+|+++|+
T Consensus 4 cneC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi 49 (50)
T d1ijqa2 4 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49 (50)
T ss_dssp TSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred ccccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence 36788999999999998763 469999999999999999997
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=3.5e-10 Score=75.96 Aligned_cols=36 Identities=47% Similarity=1.146 Sum_probs=33.1
Q ss_pred CCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 31 ~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.|.+++|+|. +++||+..|+|||..||. |||||.+|
T Consensus 1 PC~~~~f~C~-~g~Ci~~~~~CDg~~DC~--dgsDE~~C 36 (37)
T d1ajja_ 1 PCSAFEFHCL-SGECIHSSWRCDGGPDCK--DKSDEENC 36 (37)
T ss_dssp CCCTTCEECT-TSCEECGGGTTSSSCCST--TCGGGTTC
T ss_pred CCCCCceEcC-CCCEECchhcCCCCCcCC--CCchhhcc
Confidence 4889999997 789999999999999999 99999776
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.81 E-value=2.2e-10 Score=79.15 Aligned_cols=38 Identities=37% Similarity=0.960 Sum_probs=33.8
Q ss_pred CCCCCCCcccC-CCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCN-ETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~-~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
++|.+++|+|. .+++|||..|+|||..||. |+|||.+|
T Consensus 1 P~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~--dgsDE~~C 39 (41)
T d2gtlo2 1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCR--NGEDEKDC 39 (41)
T ss_dssp CSSCTTEEECCSSSCCEEEGGGTTSSSCCSS--SCHHHHCC
T ss_pred CCCCcCeeECCCCCCcEeechhccCCCCcCC--CCchhccC
Confidence 47999999996 3579999999999999999 99999876
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.1e-09 Score=75.80 Aligned_cols=40 Identities=30% Similarity=0.641 Sum_probs=36.2
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccc
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYL 172 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~ 172 (841)
|||. .++.|+|.|.|++|||+|.|++||.|.+|+++|+++
T Consensus 2 dEC~-~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~ai 41 (41)
T d1i0ua2 2 DECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41 (41)
T ss_dssp CTTT-TTTSCSSCEECSSSCCEECCCTTEEECTTTCCEEEC
T ss_pred ccCC-CCCCCCCEeECCCCCEEeECCCCCeECCCCCccccC
Confidence 5786 467999999999999999999999999999999864
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=5.8e-10 Score=76.03 Aligned_cols=36 Identities=39% Similarity=1.163 Sum_probs=31.9
Q ss_pred CCCCCcccCCC-CeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 32 CDESHFTCNET-LRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 32 C~~~~~~C~~~-~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
|.+++|+|.+. .+|||..|+|||..||. |+|||.+|
T Consensus 1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~--DgsDE~~C 37 (39)
T d1v9u5_ 1 CRIHEISCGAHSTQCIPVSWRCDGENDCD--SGEDEENC 37 (39)
T ss_dssp CCTTSCCCSSSSSCCCCGGGSSSSSCCST--TSGGGSSC
T ss_pred CCCCceECCCCCCCeeechhcCcCcccCC--CCchhccC
Confidence 78899999743 57999999999999999 99999876
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=7.5e-10 Score=80.96 Aligned_cols=38 Identities=26% Similarity=0.684 Sum_probs=36.3
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
|+.+||+|+|+|++.+.+.|+|.|+.||.|.+|++||.
T Consensus 2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~ 39 (53)
T d2bz6l1 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEE
T ss_pred CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCccc
Confidence 88899999999999988889999999999999999998
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.4e-09 Score=76.45 Aligned_cols=39 Identities=36% Similarity=0.969 Sum_probs=35.1
Q ss_pred CCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 28 QDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 28 ~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
....|.+++|+|. +++|||..|+|||..||. |||||..|
T Consensus 4 ~~~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~--DgsDE~~c 42 (44)
T d1f5ya1 4 VGDRCERNEFQCQ-DGKCISYKWVCDGSAECQ--DGSDESQE 42 (44)
T ss_dssp SCCCCCSSSEECS-SSCEECTTTTTSSSCSSS--SSGGGTTS
T ss_pred CCCccCCCCeEcC-CCCeEChhHcCCCcCcCC--CCCcCCCC
Confidence 4567999999998 789999999999999999 99999765
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Probab=98.73 E-value=1.5e-09 Score=75.46 Aligned_cols=37 Identities=46% Similarity=1.120 Sum_probs=32.3
Q ss_pred CCCCCCcccCC----CCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 31 KCDESHFTCNE----TLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 31 ~C~~~~~~C~~----~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
+|++++|+|.+ .++|||..|+|||..||. |+|||.+|
T Consensus 1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~--DgsDE~~C 41 (42)
T d1k7ba_ 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD--DGRDEWGC 41 (42)
T ss_dssp CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSS--SSTTTGGG
T ss_pred CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCc--CChhhhcc
Confidence 58899999953 357999999999999999 99999876
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.1e-09 Score=75.61 Aligned_cols=38 Identities=42% Similarity=0.961 Sum_probs=34.2
Q ss_pred CCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 29 DRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 29 ~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
+..|..++|+|. +++||+..|+|||..||. |||||..|
T Consensus 3 p~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~--DgsDE~~~ 40 (45)
T d1d2la_ 3 PPQCQPGEFACA-NSRCIQERWKCDGDNDCL--DNSDEAPA 40 (45)
T ss_dssp CCBTTBTCEEET-TTEEECGGGTTTSSCTTT--TCSTTSTT
T ss_pred CCcCCCCCeEcC-CCCeEChhhhCcCcCcCC--CCCCCCcC
Confidence 467999999997 789999999999999999 99999653
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=1.6e-09 Score=80.42 Aligned_cols=39 Identities=26% Similarity=0.810 Sum_probs=36.8
Q ss_pred CCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 594 PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 594 ~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
-|..+||+|+|+|+..+.+.|+|.|+.||.|.+|+++|.
T Consensus 2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~ 40 (57)
T d1rfnb_ 2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 40 (57)
T ss_dssp CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEE
T ss_pred ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCccc
Confidence 388899999999999988889999999999999999999
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=5.2e-09 Score=72.38 Aligned_cols=41 Identities=37% Similarity=0.871 Sum_probs=38.0
Q ss_pred ccccCCCCCccCceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 172 LHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 172 ~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
+|||+..+.|+|.|.|+ .|+|+|.|++||.|..++++|+++
T Consensus 1 idEC~~~~~C~~~C~n~--~Gsy~C~C~~Gy~L~~d~~~C~ai 41 (41)
T d1i0ua2 1 IDECQDPDTCSQLCVNL--EGGYKCQCEEGFQLDPHTKACKAV 41 (41)
T ss_dssp CCTTTTTTSCSSCEECS--SSCCEECCCTTEEECTTTCCEEEC
T ss_pred CccCCCCCCCCCEeECC--CCCEEeECCCCCeECCCCCccccC
Confidence 57898778999999999 999999999999999999999875
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.4e-09 Score=73.94 Aligned_cols=35 Identities=51% Similarity=1.130 Sum_probs=32.4
Q ss_pred CCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCc
Q psy14257 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDH 68 (841)
Q Consensus 31 ~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~ 68 (841)
+|++++|+|. +++|||..|+|||..||. |||||..
T Consensus 2 tC~~~~f~C~-~g~CI~~~~~CDg~~DC~--DgsDE~~ 36 (39)
T d2fcwb2 2 TCGPASFQCN-SSTCIPQLWACDNDPDCE--DGSDEWP 36 (39)
T ss_dssp HCCTTEEECT-TSCEEEGGGTTSSSCCST--TCGGGCG
T ss_pred ccCCCceEcC-CCCeEChhhcCCCCCCCC--CCCcCCC
Confidence 5889999998 899999999999999999 9999965
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.7e-09 Score=75.98 Aligned_cols=37 Identities=54% Similarity=1.255 Sum_probs=34.3
Q ss_pred CCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 30 ~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.+|.+++|+|. +++|||..|+|||..||. |+|||.+|
T Consensus 3 ~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~--DgsDE~~c 39 (44)
T d1j8ea_ 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDCG--DYSDETHA 39 (44)
T ss_dssp SSSCTTEEECT-TSCEEEGGGTTSSSCCSS--SSGGGSHH
T ss_pred ccCCCCcEEcC-CCCEEChhhcCcCcccCC--CCCcCCCC
Confidence 57999999998 889999999999999999 99999876
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=4e-09 Score=72.98 Aligned_cols=40 Identities=30% Similarity=0.762 Sum_probs=35.5
Q ss_pred ccccc-cCCCCCCCcccCCCCcEEecCCCceecCCCCcccc
Q psy14257 132 DEKQC-LRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 132 ~eC~~-~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
|||.. .++.|+|.|.|++|+|+|.|++||.|.+|+++|..
T Consensus 1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~~ 41 (42)
T d1nzia2 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 41 (42)
T ss_dssp CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeecC
Confidence 57864 45799999999999999999999999999999963
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.65 E-value=7.4e-07 Score=97.65 Aligned_cols=69 Identities=10% Similarity=0.021 Sum_probs=47.5
Q ss_pred CceeEEE---e-----ccCCEEEEEeCCCCeEEEEEcCCCeeEE---EEcCCCCCCcceEEEEe-cCe-EEEEeCCCCeE
Q psy14257 495 WPNGLTL---D-----YQLTRIYWIDAKSDSIHTVTYDGKDHHV---VLSNHDSLTHPFAIALF-ENH-VYWTDWRTNSV 561 (841)
Q Consensus 495 ~P~glal---D-----~~~~~LYw~d~~~~~I~~~~~dG~~~~~---i~~~~~~l~~P~gla~~-~~~-lY~td~~~~~i 561 (841)
.|.||++ + .-.+.|++++...+.|.++.++...... .........+|.+|++. +|. ||+++...+.|
T Consensus 350 apsg~~fY~g~~~~fp~~~g~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~~~~~~R~rdv~~gpDGs~lyv~~d~~G~i 429 (450)
T d1crua_ 350 APSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNV 429 (450)
T ss_dssp CBCCCEECCCCTTCCTTCTTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCE
T ss_pred cCccceEecCCcccCcccCCCEEEEECcCCEEEEEEEcCCCceeeEEEEeccCCCCCceEEEECCCCCEEEEEECCCCCE
Confidence 4667775 1 1247899999999999999887643211 11111234679999995 465 89999999998
Q ss_pred EE
Q psy14257 562 IR 563 (841)
Q Consensus 562 ~~ 563 (841)
+|
T Consensus 430 ~r 431 (450)
T d1crua_ 430 QK 431 (450)
T ss_dssp EC
T ss_pred ec
Confidence 86
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.64 E-value=3.6e-09 Score=75.01 Aligned_cols=41 Identities=34% Similarity=0.617 Sum_probs=33.0
Q ss_pred ccccccCC---CCCCCcccCCCCcEEecCCCceecCCCCccccc
Q psy14257 132 DEKQCLRS---DCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYL 172 (841)
Q Consensus 132 ~eC~~~~~---~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~ 172 (841)
|||...++ .|+|.|+|++|||+|.|++||.|.+|+++|..+
T Consensus 2 dEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~i 45 (45)
T d1nt0a3 2 DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45 (45)
T ss_dssp CTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred cCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCccccC
Confidence 46765443 589999999999999999999999999999753
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.62 E-value=8e-09 Score=70.95 Aligned_cols=36 Identities=36% Similarity=0.896 Sum_probs=32.1
Q ss_pred CCCCCCcccC-CCCeEecCCCCCCCCCCcccCCCCCCCc
Q psy14257 31 KCDESHFTCN-ETLRCIPLAWACDGQPDCGLNDTSDEDH 68 (841)
Q Consensus 31 ~C~~~~~~C~-~~~~Ci~~~~~Cdg~~dC~~~d~sde~~ 68 (841)
.|++++|+|. +.++|||..|+|||..||. |||||..
T Consensus 1 ~C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~--DgsDE~~ 37 (41)
T d2gtln2 1 HCEKRTFQCGGNEQECISDLLVCDGHKDCH--NAHDEDP 37 (41)
T ss_dssp SSCTTEEECCSSSCCEEETTTTTSSSCCST--TCTTSCG
T ss_pred CCCCCeeECCCcCCCeechHHcCCCCccCC--CCCcccc
Confidence 4889999996 3579999999999999999 9999965
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5.5e-09 Score=71.53 Aligned_cols=38 Identities=26% Similarity=0.611 Sum_probs=34.7
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|||...++.|+|.|.|++++|+|.|++||.|. |+++|+
T Consensus 3 neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~tC~ 40 (40)
T d3bpse1 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE 40 (40)
T ss_dssp CGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTEEC
T ss_pred ccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCcCC
Confidence 67888889999999999999999999999995 888885
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=6.2e-09 Score=75.18 Aligned_cols=37 Identities=38% Similarity=0.896 Sum_probs=34.5
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
|+.+||+|+|+|+..+ ++|+|.|+.||.|.+|++||.
T Consensus 2 C~~~NGgC~~~C~~~~-g~~~C~C~~Gy~L~~D~~tC~ 38 (50)
T d1autl2 2 CSLDNGGCTHYCLEEV-GWRRCSCAPGYKLGDDLLQCH 38 (50)
T ss_dssp SSSGGGGCSSEEEECS-SSEEEECCTTEEECTTSSCEE
T ss_pred CCCCCCCcccEeecCC-CCeEEECCCCCEECCCCCccc
Confidence 7888999999999887 569999999999999999998
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=6e-09 Score=73.82 Aligned_cols=40 Identities=38% Similarity=0.689 Sum_probs=34.9
Q ss_pred ccccccCC---CCCCCcccCCCCcEEecCCCceecCCCCcccc
Q psy14257 132 DEKQCLRS---DCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 132 ~eC~~~~~---~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
|||...++ .|++.|.|++|||+|.|++||.|..|+++|.+
T Consensus 2 dEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D 44 (45)
T d1szba2 2 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44 (45)
T ss_dssp CTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred cCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence 46765543 68999999999999999999999999999976
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=6.7e-09 Score=71.11 Aligned_cols=40 Identities=35% Similarity=0.786 Sum_probs=35.7
Q ss_pred ccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 591 KKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 591 ~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
++|+|..+|++|+|+|+..+ ++|+|+||.||.|. |+++|.
T Consensus 1 G~neC~~~nggC~h~C~n~~-g~~~C~C~~Gy~L~-d~~tC~ 40 (40)
T d3bpse1 1 GTNECLDNNGGCSHVCNDLK-IGYECLCPDGFQLV-AQRRCE 40 (40)
T ss_dssp CSCGGGTGGGGCSSEEEECS-SSEEEECCTTCCEE-TTTEEC
T ss_pred CcccCCCCCCCCcCEEEcCC-CCEEEECCCCCEEC-CCCcCC
Confidence 46899999999999999987 55999999999995 888884
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=9.2e-09 Score=72.14 Aligned_cols=40 Identities=30% Similarity=0.627 Sum_probs=35.9
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCcccc
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
|||+..+..|++.|+|++|+|+|.|++||+|.+++++|.|
T Consensus 4 dEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~D 43 (43)
T d1uzka1 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43 (43)
T ss_dssp CGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred cccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCcccC
Confidence 6787666678889999999999999999999999999875
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.56 E-value=8.6e-09 Score=71.20 Aligned_cols=36 Identities=44% Similarity=0.831 Sum_probs=32.0
Q ss_pred CCCCCCcccCC-CCeEecCCCCCCCCCCcccCCCCCCCc
Q psy14257 31 KCDESHFTCNE-TLRCIPLAWACDGQPDCGLNDTSDEDH 68 (841)
Q Consensus 31 ~C~~~~~~C~~-~~~Ci~~~~~Cdg~~dC~~~d~sde~~ 68 (841)
.|++++|+|.+ .++|||..|+|||..||. |||||..
T Consensus 2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~--DgsDE~~ 38 (42)
T d2gtlm2 2 HCDEHESECRGDVPECIHDLLFCDGEKDCR--DGSDEDP 38 (42)
T ss_dssp CCCTTEEECSSSSCCEEEGGGTTSSSCCSS--SSTTTSH
T ss_pred CCCCCeeECCCCCCCEechhhcCCCCccCC--CCCcCCc
Confidence 68999999963 478999999999999999 9999954
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.55 E-value=7.7e-05 Score=76.29 Aligned_cols=293 Identities=7% Similarity=-0.045 Sum_probs=155.1
Q ss_pred EEEecCCCcEEEEccCCce-EEEEec-CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCC
Q psy14257 416 YWVESNLDQIEVAKLSGQF-RRTLIA-GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRG 493 (841)
Q Consensus 416 Y~tD~~~~~I~v~~~~G~~-~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~ 493 (841)
+++-...++|.+.++.... ..++-. .....|.+|+++|++.+||++... .+.|...++........+.........
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~--~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECC--CCeEEEEECCCCcEEEEEecCCCcccc
Confidence 3444455778888776433 333322 234679999999998899998765 678999988644333333211001123
Q ss_pred CCceeEEEeccCCEEEEEeC-----------CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCe
Q psy14257 494 AWPNGLTLDYQLTRIYWIDA-----------KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNS 560 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~-----------~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~ 560 (841)
..|.++++.+.+++||++.. ....+...+.........+.. ...|.++++. +.++|+++ +.
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~---~~ 155 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLYGLG---RD 155 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEEEES---SS
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc---cCCceEEEEcCCCCEEEEEc---CC
Confidence 46789999999999999863 245677777766555444433 2457788884 45788775 33
Q ss_pred EEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEE
Q psy14257 561 VIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFII 640 (841)
Q Consensus 561 i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~ 640 (841)
+..++..+++....+... ..+......|.....-.. .... ....- .......+..+-. .
T Consensus 156 ~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~-~~~~~~~~~~~~~-------~ 214 (337)
T d1pbyb_ 156 LHVMDPEAGTLVEDKPIQ-SWEAETYAQPDVLAVWNQ-----------HESS-GVMAT-PFYTARKDIDPAD-------P 214 (337)
T ss_dssp EEEEETTTTEEEEEECST-TTTTTTBCCCBCCCCCCC-----------CTTT-TEEEE-EEEEEBTTSCTTS-------G
T ss_pred cceeeeecCcEEEEeecC-CccccceecCCcceeecc-----------cccc-ceeee-eeeeeeeccceee-------e
Confidence 445565555544333211 011000011111000000 0000 00000 0000001111111 0
Q ss_pred eecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccc
Q psy14257 641 FSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSK 720 (841)
Q Consensus 641 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~ 720 (841)
......+..+++...........+ ....+..+++.+....+|..+ +.|..+++.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~----------------- 272 (337)
T d1pbyb_ 215 TAYRTGLLTMDLETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNAS----------------- 272 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEEE---SEEEEEETTTTEE-----------------
T ss_pred cccCccEEEEEcCCCcEEEEEecC--CCcceEEEEecccceEEEEcc---ccEEEEECCCCcE-----------------
Confidence 011122333333322211111111 123456677888888888776 6788888765440
Q ss_pred cccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc
Q psy14257 721 RSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE 772 (841)
Q Consensus 721 ~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~ 772 (841)
...+ . .-..|.+||+.+.++.||.+ . ..++|.++++...
T Consensus 273 --------~~~~-~-~~~~~~~~~~s~dG~~l~v~--~-~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 273 --------IKRV-P-LPHSYYSVNVSTDGSTVWLG--G-ALGDLAAYDAETL 311 (337)
T ss_dssp --------EEEE-E-CSSCCCEEEECTTSCEEEEE--S-BSSEEEEEETTTC
T ss_pred --------EEEE-c-CCCCEEEEEECCCCCEEEEE--e-CCCcEEEEECCCC
Confidence 1122 2 23568999999999999998 3 4678999998753
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.54 E-value=7.3e-06 Score=85.90 Aligned_cols=223 Identities=12% Similarity=0.081 Sum_probs=129.6
Q ss_pred CCCEEEEccCCCcccccc---cc-----CcCCCceEEEEcc---CCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeec
Q psy14257 327 DGGIEKAGMHGENRSPLV---TK-----NIQWPSSLVIDYN---QDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLG 393 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~---~~-----~~~~P~glavD~~---~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~ 393 (841)
.|+|...+++........ .. ..-.|.||.+-.. ..+||+++. ...+|+.+.++-...+..+-.. +.
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~-v~ 145 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT-IR 145 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE-EC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEee-cC
Confidence 478888887654333321 11 1246999988432 237888886 5678888887644433322111 11
Q ss_pred CCCccccCCCCCCcccc-ccceEEEEecC---------------CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCe
Q psy14257 394 SDSRVGIPNCRPEDNLW-IGKNLYWVESN---------------LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGL 457 (841)
Q Consensus 394 ~~~~~~i~~~~~~avdw-~~~~LY~tD~~---------------~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~ 457 (841)
.+. +..++ ++.. -.+.+|+|+.. .....+...+++..+++. +++..|+|||++|++.+
T Consensus 146 ~~~-~~~pN----Dv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~ 219 (340)
T d1v04a_ 146 HKL-LPSVN----DIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKY 219 (340)
T ss_dssp CTT-CSSEE----EEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSE
T ss_pred Ccc-ccCcc----ceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCE
Confidence 111 00010 1111 12789999631 123455666666666554 46889999999999999
Q ss_pred EEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC--------------CCeEEEEE-
Q psy14257 458 LFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--------------SDSIHTVT- 522 (841)
Q Consensus 458 Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--------------~~~I~~~~- 522 (841)
||+++.. ..+|.++.+++.......... .--..|..|.+|..++.++++-.. ...+.++.
T Consensus 220 lyVa~t~--~~~i~~y~~~~~~~l~~~~~~---~l~~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~ 294 (340)
T d1v04a_ 220 VYIAELL--AHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQD 294 (340)
T ss_dssp EEEEEGG--GTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEEC
T ss_pred EEEEeCC--CCeEEEEEeCCCcccceEEEe---cCCCCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEe
Confidence 9999988 789999999876543332210 123469999999877888776311 11344442
Q ss_pred --cCCCeeEEEEcC-CCCCCcceEEEEecCeEEEEeCCCCeE
Q psy14257 523 --YDGKDHHVVLSN-HDSLTHPFAIALFENHVYWTDWRTNSV 561 (841)
Q Consensus 523 --~dG~~~~~i~~~-~~~l~~P~gla~~~~~lY~td~~~~~i 561 (841)
..+..+..++.. ...+.........+++||+.......|
T Consensus 295 ~~~~~~~v~~~~~~~G~~~~~~T~a~~~~g~L~iGs~~~~~l 336 (340)
T d1v04a_ 295 ILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKAL 336 (340)
T ss_dssp TTSSSCEEEEEEEECSSSSCSEEEEEEETTEEEEEESSSCEE
T ss_pred ccCCCCeEEEEEeCCCcEeeceEEEEEECCEEEEEeeeCCce
Confidence 222334444433 233444444445789999987665544
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.52 E-value=1.5e-08 Score=73.54 Aligned_cols=37 Identities=32% Similarity=0.849 Sum_probs=34.2
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
|..+||+|+|+|+..+ ++|+|.|+.||.|.+|++||.
T Consensus 1 C~~~NGgC~h~C~~~~-~~~~C~C~~Gy~L~~D~~tC~ 37 (51)
T d1kigl_ 1 CSLDNGGCDQFCREER-SEVRCSCAHGYVLGDDSKSCV 37 (51)
T ss_dssp CCTTTTSSSSCCCEET-TEECCCCCTTEEECTTSSCEE
T ss_pred CCCCCCCcccEeEcCC-CcEEeEcCCCCEECCCCCccc
Confidence 7789999999999876 569999999999999999998
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.51 E-value=1.8e-08 Score=73.20 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=39.1
Q ss_pred ccccCCCCCCCcccCCCCcEEecCCCceecCCCCcccccccc
Q psy14257 134 KQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
|...++.|+|.|.+++++|+|.|++||.|.+|+++|.++++|
T Consensus 1 C~~~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~ 42 (51)
T d1kigl_ 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred CCCCCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence 556788999999999999999999999999999999999887
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.51 E-value=0.00029 Score=73.51 Aligned_cols=339 Identities=9% Similarity=-0.051 Sum_probs=167.2
Q ss_pred ccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEe
Q psy14257 299 AEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRV 378 (841)
Q Consensus 299 p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~l 378 (841)
...+|+-|.++.+|+.-.. .....++|+.++.. ..+.+..-..+.+.++++.+++++||++......+.....
T Consensus 23 ~~~~a~spdg~~~~~~~~~-----~~~~~~~v~v~D~~--tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPA-----HHSAIIQQWVLDAG--SGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred ccccccCCCCCEEEEEccc-----ccCCCceEEEEECC--CCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence 3445566666566553110 11223456666533 2222222234455589999999999988754332221111
Q ss_pred cCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeE
Q psy14257 379 DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLL 458 (841)
Q Consensus 379 dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~L 458 (841)
+ +.|.+-|..+++....-..+...... ....|.++++.+..+.+
T Consensus 96 ~---------------------------------~~v~v~D~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~~ 139 (373)
T d2madh_ 96 T---------------------------------DYVEVFDPVTFLPIADIELPDAPRFD---VGPYSWMNANTPNNADL 139 (373)
T ss_pred c---------------------------------eEEEEEECCCCcEEEEEecCCcceeE---eccCCCcEEEEeCCCcE
Confidence 1 33333343333322111111111111 12468899999998888
Q ss_pred EEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC--C
Q psy14257 459 FWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH--D 536 (841)
Q Consensus 459 y~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~--~ 536 (841)
|+..+.. ...+...+... .+.+. ....|.++++.+.+.++|++....+.+..++.++.......... .
T Consensus 140 ~v~~~~~-~~~~~~~~~~~--~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~ 209 (373)
T d2madh_ 140 LFFQFAA-GPAVGLVVQGG--SSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT 209 (373)
T ss_pred EEEEEcC-CCceEEeeccC--CeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc
Confidence 8887652 33444443332 22222 23457889998888999999988899999988775544332211 0
Q ss_pred CCCcc--eEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce--eccCCcccCCCCCCCCCCccccccCCCC
Q psy14257 537 SLTHP--FAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI--YVNGVVKKSPCEMNNGNCSHLCLIGMNG 612 (841)
Q Consensus 537 ~l~~P--~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~--~h~qp~~~n~C~~~ng~Cs~lC~~~~~~ 612 (841)
....| ..+....+..++.....+.+..++..++............... ....|... ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-------- 271 (373)
T d2madh_ 210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW----------QQ-------- 271 (373)
T ss_pred cCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcc----------ee--------
Confidence 11122 3333444444444444566666654443322221111100000 00111000 00
Q ss_pred ceeeeCCCCceeecCCCcccc--cC-ceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCE-EEEEEC
Q psy14257 613 TYKCQCPHVMKLMSDNKTCQV--AD-SQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK-IYWTDQ 688 (841)
Q Consensus 613 ~~~C~Cp~g~~l~~d~~tC~~--~~-~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-iyw~d~ 688 (841)
....+|+..... .. ..++.....+.|..+++.... .+..++. -..+.+++|.|..+. +|.+..
T Consensus 272 ---------~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~--~~~~~~~--~~~~~~~a~spDG~~~l~vt~~ 338 (373)
T d2madh_ 272 ---------VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--TSSQISL--GHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ---------eEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc--EEEEecC--CCCeeEEEECCCCCEEEEEEeC
Confidence 011111111110 11 122222334456666554332 1222222 245788999998876 466777
Q ss_pred CCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEee
Q psy14257 689 EYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDW 747 (841)
Q Consensus 689 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~ 747 (841)
..++|+.+++.... ....+...-..|+.|+|..
T Consensus 339 ~d~~v~v~D~~tg~--------------------------~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 339 GTEVLHIYDAGAGD--------------------------QDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred CCCeEEEEECCCCC--------------------------EEEEECCCCCCCcEEEEec
Confidence 88999999887655 2233433446799999974
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.50 E-value=0.00033 Score=75.19 Aligned_cols=214 Identities=7% Similarity=-0.048 Sum_probs=135.8
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-ccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE-NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESV 376 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~-~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~ 376 (841)
.|..+.+++..+++++ ++ ...+++|..+++... .+..+ ... ..|.+|++.+++++||.+.. .+.|...
T Consensus 20 ~p~~~~~~~d~~~~~~-V~-------~~~dg~v~vwD~~t~~~~~~l-~~g-~~~~~vafSPDGk~l~~~~~-d~~v~vw 88 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFS-VT-------LRDAGQIALVDGDSKKIVKVI-DTG-YAVHISRMSASGRYLLVIGR-DARIDMI 88 (426)
T ss_dssp SCSSCCSCCCGGGEEE-EE-------ETTTTEEEEEETTTCSEEEEE-ECC-SSEEEEEECTTSCEEEEEET-TSEEEEE
T ss_pred CCCcccccCCCCeEEE-EE-------EcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECCCCCEEEEEeC-CCCEEEE
Confidence 4555555554333432 33 234679999988643 33333 222 46999999999999999875 4789999
Q ss_pred EecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecC-----------CCCC
Q psy14257 377 RVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG-----------DMES 445 (841)
Q Consensus 377 ~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~-----------~l~~ 445 (841)
+++......+..+........+.. ..++.+.++.||++....+.|.+.+............ .-..
T Consensus 89 d~~t~~~~~~~~i~~~~~~~~~~~----s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 89 DLWAKEPTKVAEIKIGIEARSVES----SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp ETTSSSCEEEEEEECCSEEEEEEE----CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EccCCceeEEEEEeCCCCCcceEE----eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence 998776554433221111000000 0122234577899888888888888765443322221 1134
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-CCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-EHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d 524 (841)
+..++..+....++++..+ ...|....... ....+... .....|.++++++.++++|++....+.+..++..
T Consensus 165 ~~~i~~s~d~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~ 237 (426)
T d1hzua2 165 VAAIIASHEHPEFIVNVKE--TGKVLLVNYKDIDNLTVTSI-----GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237 (426)
T ss_dssp EEEEEECSSSSEEEEEETT--TTEEEEEECSSSSSCEEEEE-----ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred eeEEEECCCCCEEEEecCC--CCeEEEEEeccccceeeEEe-----ccCCccEeeeECCCCcEEEeeeecccceeeeecc
Confidence 5678888888888888876 56776666543 33222222 2456799999999999999999988999999887
Q ss_pred CCeeEEEEc
Q psy14257 525 GKDHHVVLS 533 (841)
Q Consensus 525 G~~~~~i~~ 533 (841)
.........
T Consensus 238 ~~~~~~~~~ 246 (426)
T d1hzua2 238 DRRLSALVD 246 (426)
T ss_dssp TTEEEEEEE
T ss_pred cccEEEEec
Confidence 665544443
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.1e-08 Score=74.11 Aligned_cols=37 Identities=27% Similarity=0.803 Sum_probs=34.3
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCccc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~ 632 (841)
|..+||+|+|+|+..+ ++|+|.|+.||.|.+|++||.
T Consensus 3 C~~~NGgC~h~C~n~~-g~~~C~C~~Gy~L~~D~~tC~ 39 (51)
T d2p3ua1 3 CSLDNGDCDQFCHEEQ-NSVVCSCARGYTLADNGKACI 39 (51)
T ss_dssp GGTGGGGCSSEEEEET-TEEEEECCTTEEECTTSSCEE
T ss_pred cCCCCCCcccEeecCC-CCeEeEcCCCCEECCCCCccc
Confidence 7788999999999877 569999999999999999998
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=2.9e-08 Score=71.60 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=38.3
Q ss_pred ccccCCCCCCCcccCCCCcEEecCCCceecCCCCcccccccc
Q psy14257 134 KQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
|+..++.|+|.|++++++|+|.|+.||.|.+|+++|+...++
T Consensus 2 C~~~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~~ 43 (50)
T d1autl2 2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43 (50)
T ss_dssp SSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSSS
T ss_pred CCCCCCCcccEeecCCCCeEEECCCCCEECCCCCccccCCCC
Confidence 666788999999999999999999999999999999987653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.46 E-value=8e-06 Score=89.19 Aligned_cols=166 Identities=11% Similarity=0.178 Sum_probs=97.1
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL 422 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~ 422 (841)
++.+.+..|.+|++.++ ++||+++...++|++++.++...+.+..+... +.
T Consensus 21 ~ia~~L~~P~~la~~pd-g~llVter~~G~i~~v~~~~g~~~~i~~~~~~----------------------~~------ 71 (450)
T d1crua_ 21 VILSNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEI----------------------VN------ 71 (450)
T ss_dssp EEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTC----------------------CC------
T ss_pred EEECCCCCceEEEEeCC-CeEEEEEecCCEEEEEECCCCcEeecccCCcc----------------------cc------
Confidence 34567899999999875 46667766556666655544433332211000 00
Q ss_pred CcEEEEccCCceEEEEecCCCCCceeEEEcCC---CCeEEEEecCC----------CCCeEEEecCCCCCc-----EEEE
Q psy14257 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPR---FGLLFWTDWDS----------KAPRIERCSMSGEHR-----SVIV 484 (841)
Q Consensus 423 ~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~---~g~Ly~td~~~----------~~~~I~r~~ldG~~~-----~~i~ 484 (841)
...+-.--.+||+||. +++||++-... ....|.|...++... +.++
T Consensus 72 ----------------~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~ 135 (450)
T d1crua_ 72 ----------------DADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLL 135 (450)
T ss_dssp ----------------CTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred ----------------ccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEe
Confidence 0001122357999984 78999874210 011355666554432 2222
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEeCC--------------------------------CCeEEEEEcCCCee----
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--------------------------------SDSIHTVTYDGKDH---- 528 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d~~--------------------------------~~~I~~~~~dG~~~---- 528 (841)
. ......-+.-..|++++ +++||++-.. .++|.++++||+..
T Consensus 136 ~-~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP 213 (450)
T d1crua_ 136 A-GLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNP 213 (450)
T ss_dssp E-EECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCC
T ss_pred e-cccccccccccceeEcC-CCCEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeecccccccccc
Confidence 2 11122334556899996 5789998432 37999999998642
Q ss_pred ------EEEEcCCCCCCcceEEEEe-cCeEEEEeCC
Q psy14257 529 ------HVVLSNHDSLTHPFAIALF-ENHVYWTDWR 557 (841)
Q Consensus 529 ------~~i~~~~~~l~~P~gla~~-~~~lY~td~~ 557 (841)
..+.... +.+|+++++. ++.||++|.+
T Consensus 214 ~~~~~~~ei~a~G--~RNp~g~~~~p~g~l~~~e~G 247 (450)
T d1crua_ 214 SFNGVVSHIYTLG--HRNPQGLAFTPNGKLLQSEQG 247 (450)
T ss_dssp EETTEECSEEEBC--CSEEEEEEECTTSCEEEEEEC
T ss_pred ccccccceEEEec--cccccceeecccceeeecccc
Confidence 1233332 7899999996 6899999865
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=3.6e-08 Score=68.67 Aligned_cols=34 Identities=38% Similarity=0.800 Sum_probs=30.5
Q ss_pred CCC-CCCcccCCCCeEecCCCCCCCCCCcccCCCCCCC
Q psy14257 31 KCD-ESHFTCNETLRCIPLAWACDGQPDCGLNDTSDED 67 (841)
Q Consensus 31 ~C~-~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~ 67 (841)
.|. +.+|+|. +++|||..|+|||..||. |+|||.
T Consensus 5 ~C~~~~~f~C~-~g~CI~~~~~CDg~~DC~--DgsDE~ 39 (44)
T d1xfea2 5 LCEGPNKFKCH-SGECITLDKVCNMARDCR--DWSDEP 39 (44)
T ss_dssp SCCSTTEEECT-TSCEEESTTTTCSSCCCS--SCSSSC
T ss_pred cCCCCCeEECC-CCCeEchhhcCCCCCCCC--CCCccC
Confidence 464 6899998 889999999999999999 999995
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3e-08 Score=71.82 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=38.5
Q ss_pred ccccCCCCCCCcccCCCCcEEecCCCceecCCCCcccccccc
Q psy14257 134 KQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
|...++.|+|.|.|++++|.|.|+.||.|.+|+++|.+..++
T Consensus 3 C~~~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~~ 44 (51)
T d2p3ua1 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 44 (51)
T ss_dssp GGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSS
T ss_pred cCCCCCCcccEeecCCCCeEeEcCCCCEECCCCCccccCCcc
Confidence 666788999999999999999999999999999999987754
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=5.8e-08 Score=69.89 Aligned_cols=40 Identities=28% Similarity=0.730 Sum_probs=36.1
Q ss_pred cccccccCCCCCCCcc------cCCCCcEEecCCCceecCCCCccc
Q psy14257 131 CDEKQCLRSDCHHDCY------NTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 131 C~eC~~~~~~C~~~C~------~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|+||...++.|+|.|+ ++.++|+|.|+.||.|.+|+++|.
T Consensus 4 cneC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi 49 (50)
T d1ijqa2 4 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49 (50)
T ss_dssp TSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred ccccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence 6889988999999996 455899999999999999999985
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=8.6e-08 Score=65.80 Aligned_cols=39 Identities=38% Similarity=0.892 Sum_probs=33.9
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
.+|.+++|.|.++.+.||+.+++|||..+|.+|+||..|
T Consensus 3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C 41 (41)
T d1f5ya2 3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41 (41)
T ss_dssp TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred cccCCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence 468889999975337899999999999999999999866
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=7.7e-08 Score=65.09 Aligned_cols=36 Identities=42% Similarity=0.900 Sum_probs=33.4
Q ss_pred CCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 94 ACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 94 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
+|.+++|.|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 2 sC~~~~f~C~~--g~CI~~~~~CDg~~DC~DgsDE~~C 37 (39)
T d1f8za_ 2 TCRPDEFQCSD--GNCIHGSRQCDREYDCKDMSDEVGC 37 (39)
T ss_dssp CCCTTEEECSS--SCEEETTTSSSCCCCSTTSGGGSSS
T ss_pred CCCCCceEeCC--CCeEChhhcCCCCCcCCCCchhccC
Confidence 58889999998 8999999999999999999999766
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.4e-07 Score=65.04 Aligned_cols=39 Identities=31% Similarity=0.612 Sum_probs=34.9
Q ss_pred cccC--CCCCccCceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 173 HPCE--AWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 173 ~eC~--~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
|||. ..+.|+|.|+|+ +|+|+|.|++||.|..|+++|++
T Consensus 1 dEC~~~~~~~C~~~C~n~--~Gsy~C~C~~Gy~L~~d~~tC~~ 41 (42)
T d1nzia2 1 NECTDFVDVPCSHFCNNF--IGGYFCSCPPEYFLHDDMKNCGV 41 (42)
T ss_dssp CTTTC-CCCCSSSEEEEE--TTEEEEECCTTCEECTTSSCEEC
T ss_pred CCCCCCCCcCCCCEeecC--CCCEEEeCCCCCEECCCCCeecC
Confidence 5786 246899999999 99999999999999999999975
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.2e-08 Score=68.11 Aligned_cols=39 Identities=33% Similarity=0.608 Sum_probs=34.5
Q ss_pred ccccccCCCCCC-CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 132 DEKQCLRSDCHH-DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 132 ~eC~~~~~~C~~-~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|||...++.|.+ .|.|++|||+|.|++||.+.+++++|.
T Consensus 3 dEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~Cv 42 (42)
T d1lmja2 3 DECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42 (42)
T ss_dssp CHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred cccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCccC
Confidence 578877788866 899999999999999999999988873
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.2e-07 Score=65.44 Aligned_cols=38 Identities=37% Similarity=0.886 Sum_probs=34.6
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+++|.|.+. +.||+.+++|||..||.+|+||..|
T Consensus 2 ~~C~~~~f~C~~~-~~CI~~~~~CDg~~DC~DgsDE~~C 39 (42)
T d1cr8a_ 2 GGCHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSC 39 (42)
T ss_dssp CCSSTTCEECTTT-CCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred CCCCCCceEcCCC-CEEccchhcCCCcCcCCCcchhccC
Confidence 4688999999865 8999999999999999999999876
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=5.3e-08 Score=67.99 Aligned_cols=39 Identities=41% Similarity=0.758 Sum_probs=34.0
Q ss_pred ccccccCCCCC-CCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 132 DEKQCLRSDCH-HDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 132 ~eC~~~~~~C~-~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|||...++.|. +.|+|++|+|+|.|++||.|..++++|+
T Consensus 4 nEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~Ce 43 (43)
T d1uzka2 4 DECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43 (43)
T ss_dssp CHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred ccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCccC
Confidence 57876677775 6899999999999999999999998884
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.34 E-value=1.7e-07 Score=66.22 Aligned_cols=41 Identities=27% Similarity=0.717 Sum_probs=34.3
Q ss_pred ccccCC-C---CCccCceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 172 LHPCEA-W---GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 172 ~~eC~~-~---~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
+|||.. . ..|+|.|+|+ .|+|+|.|++||.|..|+++|.++
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt--~gsy~C~C~~Gy~L~~d~~tC~~i 45 (45)
T d1nt0a3 1 VDECRTSLGDSVPCDHYCHNY--LGGYYCSCRVGYILHQNKHTCSAL 45 (45)
T ss_dssp CCTTC-------CCSSEEEEE--TTEEEEECCTTEEECTTSSCEEEC
T ss_pred CcCCccCCCCcCCCCCEeecC--CCCEEEeCCCCCEECCCCCccccC
Confidence 467852 2 3589999999 999999999999999999999864
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=9.9e-08 Score=64.76 Aligned_cols=36 Identities=42% Similarity=1.099 Sum_probs=33.4
Q ss_pred CCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 94 ACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 94 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
+|.+++|+|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 2 tC~~~~f~C~~--g~CI~~~~~CDg~~DC~DgsDE~~C 37 (39)
T d2fcwb1 2 TCSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASC 37 (39)
T ss_dssp CCCTTEEECTT--SCEEEGGGTTSSSCCSTTCTTTTTH
T ss_pred cCCCCCEEcCC--CCEEcchhcCcCcCcCcCCchhcCC
Confidence 58889999987 8999999999999999999999766
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=9.6e-08 Score=64.82 Aligned_cols=37 Identities=46% Similarity=0.937 Sum_probs=32.6
Q ss_pred CCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 95 C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
|++++|.|.+++..||+.+++|||..+|.+|+||..|
T Consensus 1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C 37 (39)
T d1v9u5_ 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37 (39)
T ss_dssp CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSC
T ss_pred CCCCceECCCCCCCeeechhcCcCcccCCCCchhccC
Confidence 6778999987435799999999999999999999876
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.1e-07 Score=63.48 Aligned_cols=36 Identities=39% Similarity=0.915 Sum_probs=32.9
Q ss_pred CCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 94 ACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 94 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
.|.+++|+|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 1 PC~~~~f~C~~--g~Ci~~~~~CDg~~DC~dgsDE~~C 36 (37)
T d1ajja_ 1 PCSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCCTTCEECTT--SCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCCCceEcCC--CCEECchhcCCCCCcCCCCchhhcc
Confidence 37888999987 8899999999999999999999766
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.31 E-value=0.00019 Score=73.46 Aligned_cols=99 Identities=8% Similarity=0.056 Sum_probs=66.9
Q ss_pred ceEEEEecCCCcEEEEccCCce-EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc-cC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQF-RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL-LT 490 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~-~~ 490 (841)
++.+++-...+.|.+++++... .+++.-..-..|.+|+++|++.+||++... .+.|...+++............ ..
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~--~~~v~~~d~~t~~~~~~~~~~~~~~ 85 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--YGDIYGIDLDTCKNTFHANLSSVPG 85 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEESCCSTT
T ss_pred CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC--CCcEEEEeCccCeeeeeeccccccc
Confidence 4555555566899999997543 444433334679999999998999999866 6889999886443322222100 00
Q ss_pred CCCCCceeEEEeccCCEEEEEeC
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~ 513 (841)
.....|.++++.+++++||++..
T Consensus 86 ~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 86 EVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EEEECSSCEEECTTSSEEEEEEE
T ss_pred ccCCceEEEEEecCCCEEEEEec
Confidence 11235899999999999999863
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.3e-07 Score=69.65 Aligned_cols=33 Identities=33% Similarity=0.735 Sum_probs=30.0
Q ss_pred CCCCCCcccCCCCcEEecCCCceecCCCCcccc
Q psy14257 139 SDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 139 ~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
..|+|.|+|++|||+|.|++||.|..|+++|+.
T Consensus 20 ~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~~ 52 (53)
T d1apqa_ 20 PQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp CTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred CCccCEeEcCCCCeEeECCCCCeECCCCCceec
Confidence 357889999999999999999999999999974
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.29 E-value=0.00066 Score=70.70 Aligned_cols=265 Identities=10% Similarity=-0.047 Sum_probs=141.9
Q ss_pred ccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccc-ccccc------CcCCCceEEEEccCCEEEEEeCC-C
Q psy14257 299 AEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRS-PLVTK------NIQWPSSLVIDYNQDILYWCDSH-L 370 (841)
Q Consensus 299 p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~-~l~~~------~~~~P~glavD~~~~~lYwaD~~-~ 370 (841)
+.++++.|.++.+|+.-.+.........++.|..++....... .+... ....|.++++.+.++.+|+.... .
T Consensus 68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~ 147 (373)
T d2madh_ 68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC
Confidence 3478998887666654322221111223456777776543332 22111 24468899999999998887653 3
Q ss_pred CeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEec------CCCC
Q psy14257 371 NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA------GDME 444 (841)
Q Consensus 371 ~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~------~~l~ 444 (841)
+.+...+............ +. ..++...+..+|++....+.+.+.+..+........ ....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~-----~~--------~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (373)
T d2madh_ 148 PAVGLVVQGGSSDDQLLSS-----PT--------CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred CceEEeeccCCeEEEEecc-----ce--------eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccc
Confidence 4454444443322211110 00 012223346788888888888888876544332221 1122
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC-------CCCCCceeEEEeccCCEEEEEeC----
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT-------SRGAWPNGLTLDYQLTRIYWIDA---- 513 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~-------~~~~~P~glalD~~~~~LYw~d~---- 513 (841)
.+..++.++...+++.+. ..++...+.++.....+....... ..-..+..+++.+...++|++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 290 (373)
T d2madh_ 215 LTQPAQANKSGRIVWPVY----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred eeeeEEECCCceEEEecC----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce
Confidence 344556665433443333 345666665543332222110000 01123345667767777777543
Q ss_pred -----CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cC-e-EEEEeCCCCeEEEEeccCCcceEEEecccCCCc
Q psy14257 514 -----KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-EN-H-VYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF 583 (841)
Q Consensus 514 -----~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~-~-lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~ 583 (841)
..+.|..++.........+.. -..|.++++. +| + ||++....+.|..++..+|+.+..+...-..|.
T Consensus 291 ~~~~~~~~~v~~~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~ 365 (373)
T d2madh_ 291 WKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQ 365 (373)
T ss_pred EEeecCCCeEEEEECCCCcEEEEecC---CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCc
Confidence 334666666644333222222 2457888884 33 3 678888889999999999988777654434443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.28 E-value=3.4e-05 Score=83.71 Aligned_cols=197 Identities=8% Similarity=-0.063 Sum_probs=133.6
Q ss_pred CCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 326 SDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 326 ~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
.+++|..++++.......+..+ ..|.++++.+++++||.+.. .+.|..++++....+.+..+.....+..+...
T Consensus 40 d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s---- 113 (432)
T d1qksa2 40 DAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---- 113 (432)
T ss_dssp TTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECCSEEEEEEEC----
T ss_pred CCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecCCCCCCeEEe----
Confidence 4568888888755444444333 47999999999999999875 57899999876655444332221111111000
Q ss_pred CccccccceEEEEecCCCcEEEEccCCce-EEEEecC----------CCCCceeEEEcCCCCeEEEEecCCCCCeEEEec
Q psy14257 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQF-RRTLIAG----------DMESPRAIALDPRFGLLFWTDWDSKAPRIERCS 474 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~----------~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ 474 (841)
.++.+.++.||++....+.|.+.+..... ..++... ....+.+|++++.+..+|++... .+.|...+
T Consensus 114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~--~~~i~~~d 191 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--TGKILLVD 191 (432)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--TTEEEEEE
T ss_pred cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc--CCeEEEEE
Confidence 12334557899999989999999986543 3332211 12356688999998899999876 68898888
Q ss_pred CCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC
Q psy14257 475 MSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 475 ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~ 534 (841)
........+... ..-..|.++++++.+.++|++....+.|..++.+..........
T Consensus 192 ~~~~~~~~~~~i----~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 192 YTDLNNLKTTEI----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp TTCSSEEEEEEE----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred ccCCCcceEEEE----cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence 754333333221 23457999999999999999999899999999988766555443
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.3e-07 Score=64.66 Aligned_cols=40 Identities=33% Similarity=0.839 Sum_probs=34.7
Q ss_pred ccccCC-CC---CccCceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 172 LHPCEA-WG---TCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 172 ~~eC~~-~~---~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
+|||+. .+ .|+|.|.|+ +|+|+|.|++||.|..++++|.+
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt--~Gsy~C~C~~Gy~l~~d~~tC~D 44 (45)
T d1szba2 1 IDECQVAPGEAPTCDHHCHNH--LGGFYCSCRAGYVLHRNKRTCSE 44 (45)
T ss_dssp CCTTCCCTTSCCSSSSEEEEE--TTEEEEECCTTEEECTTSSCEEE
T ss_pred CcCCcCCCCCCCCCCCCCccC--CCCeEEECCCCCeECCCCCCccC
Confidence 468862 22 589999999 99999999999999999999976
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.28 E-value=7.6e-08 Score=66.13 Aligned_cols=39 Identities=49% Similarity=1.000 Sum_probs=33.8
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
++|.+++|.|....+.||+.+++|||..||.+|+||..|
T Consensus 1 P~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C 39 (41)
T d2gtlo2 1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39 (41)
T ss_dssp CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred CCCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccC
Confidence 468899999974327899999999999999999999766
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.27 E-value=3.8e-05 Score=80.23 Aligned_cols=194 Identities=13% Similarity=-0.000 Sum_probs=114.8
Q ss_pred CCCceEEEEccCCEEEEEeC------------CCCeEEEEEecCCccEEEEeeeeecCC-----CccccCCCCCCcccc-
Q psy14257 349 QWPSSLVIDYNQDILYWCDS------------HLNTVESVRVDGSERTVSFNLEVLGSD-----SRVGIPNCRPEDNLW- 410 (841)
Q Consensus 349 ~~P~glavD~~~~~lYwaD~------------~~~~I~~~~ldG~~~~~~~~~~~~~~~-----~~~~i~~~~~~avdw- 410 (841)
..|..|++++ .+.+|++-. ..+.|..++++....+...-.-.-+.+ .+.|+..- .+-
T Consensus 35 ~G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~----~~~d 109 (340)
T d1v04a_ 35 NGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTF----IDDD 109 (340)
T ss_dssp SCCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEE----ECTT
T ss_pred CCcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEE----EcCC
Confidence 4577888876 466666542 246777777765443322110000000 11122100 000
Q ss_pred ccceEEEEec--CCCcEEEEccC--Cce---EEEEecCCCCCceeEEEcCCCCeEEEEecCCC-------------CCeE
Q psy14257 411 IGKNLYWVES--NLDQIEVAKLS--GQF---RRTLIAGDMESPRAIALDPRFGLLFWTDWDSK-------------APRI 470 (841)
Q Consensus 411 ~~~~LY~tD~--~~~~I~v~~~~--G~~---~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~-------------~~~I 470 (841)
-...||+.+. ...+|++++++ +.. ++++....+..|++|++... |.+|+|+.... .+..
T Consensus 110 g~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~-g~fy~Tnd~~~~~~~~~~~e~~~~~~~g 188 (340)
T d1v04a_ 110 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWS 188 (340)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET-TEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred CcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecC-CCEEEecCccCcChhhhhhhHhhcCCce
Confidence 0136888774 45678887774 322 33444456788999999975 77899963211 2333
Q ss_pred EEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--c
Q psy14257 471 ERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--E 548 (841)
Q Consensus 471 ~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~ 548 (841)
.....++...+++.. .+..||||+++++++.||+++....+|.++++++...-........-..|..|.++ +
T Consensus 189 ~v~~~~~~~~~~~~~------~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~ 262 (340)
T d1v04a_ 189 FVTYYSPNDVRVVAE------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT 262 (340)
T ss_dssp EEEEECSSCEEEEEE------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred eEEEEcCCceEEEcC------CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCC
Confidence 444456666666654 68899999999999999999999999999999875432221111112458888885 3
Q ss_pred CeEEEE
Q psy14257 549 NHVYWT 554 (841)
Q Consensus 549 ~~lY~t 554 (841)
+.+|++
T Consensus 263 g~lwva 268 (340)
T d1v04a_ 263 GDLWVG 268 (340)
T ss_dssp CCEEEE
T ss_pred CEEEEE
Confidence 556555
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3.1e-07 Score=64.17 Aligned_cols=41 Identities=27% Similarity=0.602 Sum_probs=35.8
Q ss_pred cccccCC-CCCccCceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 171 YLHPCEA-WGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 171 ~~~eC~~-~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
|++||+. ...|.+.|.|+ .|+|+|.|++||.|..++++|.+
T Consensus 2 DidEC~~~~~~c~~~C~Nt--~G~y~C~C~~Gy~l~~d~~~C~D 43 (43)
T d1uzka1 2 DVNECLDPTTCISGNCVNT--PGSYICDCPPDFELNPTRVGCVD 43 (43)
T ss_dssp CCCGGGSTTSSBTSEEEEE--TTEEEEECCTTCEECTTSSBEEC
T ss_pred CccccCCCCcCcCCEeECC--CCCEEEecCCCCEECCCCCcccC
Confidence 6889974 45578899999 99999999999999999999864
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.6e-07 Score=64.58 Aligned_cols=37 Identities=46% Similarity=0.920 Sum_probs=33.9
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
..|.+++|+|.+ ++||+.+++|||..+|.+|+||..|
T Consensus 6 ~~C~~~~f~C~~--g~CI~~~~~CDg~~DC~DgsDE~~c 42 (44)
T d1f5ya1 6 DRCERNEFQCQD--GKCISYKWVCDGSAECQDGSDESQE 42 (44)
T ss_dssp CCCCSSSEECSS--SCEECTTTTTSSSCSSSSSGGGTTS
T ss_pred CccCCCCeEcCC--CCeEChhHcCCCcCcCCCCCcCCCC
Confidence 568889999998 8999999999999999999999765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.23 E-value=0.0029 Score=67.43 Aligned_cols=149 Identities=9% Similarity=-0.025 Sum_probs=97.9
Q ss_pred ceEEEEecCCCcEEEEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
+.++++....++|.+.++.. +...++-. + ..|.+|+++|++.+||.+... +.|...+++......+... .
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~-g-~~~~~vafSPDGk~l~~~~~d---~~v~vwd~~t~~~~~~~~i----~ 102 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKIVKVIDT-G-YAVHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPTKVAEI----K 102 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSEEEEEEC-C-SSEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCEEEEEE----E
T ss_pred eEEEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEeCC---CCEEEEEccCCceeEEEEE----e
Confidence 44568888899999999874 44555433 3 579999999998899988753 6888888875554444332 2
Q ss_pred CCCCceeEEEec----cCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCC---------CCcceEEEE--ecCeEEEEeC
Q psy14257 492 RGAWPNGLTLDY----QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDS---------LTHPFAIAL--FENHVYWTDW 556 (841)
Q Consensus 492 ~~~~P~glalD~----~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~---------l~~P~gla~--~~~~lY~td~ 556 (841)
....|.++++.. ++++||++....+.+...+........+...... -..+..++. .+..++++..
T Consensus 103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~ 182 (426)
T d1hzua2 103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182 (426)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence 345678888764 5778999988788888888877655444332110 112233443 2356777777
Q ss_pred CCCeEEEEeccCCc
Q psy14257 557 RTNSVIRANKWNGS 570 (841)
Q Consensus 557 ~~~~i~~~~~~~g~ 570 (841)
.++.+..+...++.
T Consensus 183 ~~~~i~~~~~~~~~ 196 (426)
T d1hzua2 183 ETGKVLLVNYKDID 196 (426)
T ss_dssp TTTEEEEEECSSSS
T ss_pred CCCeEEEEEecccc
Confidence 77776666544443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.21 E-value=8.6e-05 Score=78.16 Aligned_cols=255 Identities=11% Similarity=-0.011 Sum_probs=142.3
Q ss_pred ceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc-------cCcCCCceEEEEccCCEEEEEeCCCCeE
Q psy14257 301 GLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT-------KNIQWPSSLVIDYNQDILYWCDSHLNTV 373 (841)
Q Consensus 301 giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~-------~~~~~P~glavD~~~~~lYwaD~~~~~I 373 (841)
++++.+.++.+|+.-...+.......++.|..+++........+. .....|.++++.+++++||+++...+.|
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 678877776666543222211111224468888876443322221 1245689999999999999999999999
Q ss_pred EEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEE-EecC-----CCCCce
Q psy14257 374 ESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRT-LIAG-----DMESPR 447 (841)
Q Consensus 374 ~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~-l~~~-----~l~~P~ 447 (841)
..+++.............. ..+.+.....+++....+++.+.+++...... .... ....+.
T Consensus 149 ~~~d~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSASC-------------FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ 215 (368)
T ss_dssp EEEEETTTEEEEEEECSSC-------------CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred EEEECCCCcEeEEeeccCc-------------ceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccccee
Confidence 9999987655443322110 01111224444444445555555543222111 1111 112344
Q ss_pred eEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC-----C--CCCCceeEEEeccCCEEEEEeCCC-----
Q psy14257 448 AIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT-----S--RGAWPNGLTLDYQLTRIYWIDAKS----- 515 (841)
Q Consensus 448 giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~-----~--~~~~P~glalD~~~~~LYw~d~~~----- 515 (841)
....++. +.++++. ..+++.+++++.....+....... . .-..+..+++.+..+++|++....
T Consensus 216 ~~~~~~~-g~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~ 290 (368)
T d1mdah_ 216 AAQANYP-GMLVWAV----ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL 290 (368)
T ss_dssp CEEETTT-TEEEECB----SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred ecccccC-cEEEEec----CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence 5555544 5555555 235556665544433332110000 0 011245689999999999975322
Q ss_pred ---CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cC--eEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 516 ---DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-EN--HVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 516 ---~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~--~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
.+|..++.....+...+.. -..|.++++. ++ .||++....+.|..++..+|+.+..+.
T Consensus 291 ~~~~~v~v~D~~t~~~~~~~~~---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 291 AAAENTSSVTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred cCCceEEEEECCCCcEeEEecC---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 3688888775533221111 2357788884 33 489999999999999998888766553
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.20 E-value=0.0002 Score=73.44 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=69.7
Q ss_pred eEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe
Q psy14257 448 AIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD 527 (841)
Q Consensus 448 giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~ 527 (841)
|+|+.+.+.+|+.+.. .++|...+++-. +.+....+ ..-..|.+|++.+++++||++....+.|..++++...
T Consensus 1 g~a~~~~~~~l~~~~~---~~~v~v~D~~t~--~~~~t~~~--~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~ 73 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNY---PNNLHVVDVASD--TVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 73 (346)
T ss_dssp CCCCCTTCEEEEEEET---TTEEEEEETTTT--EEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CccCCCCCcEEEEEcC---CCEEEEEECCCC--CEEEEEEc--CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe
Confidence 5788887777777664 468999988633 33322110 2345799999999999999999989999999998664
Q ss_pred eEEEEcCCC----CCCcceEEEEe--cCeEEEEeCC
Q psy14257 528 HHVVLSNHD----SLTHPFAIALF--ENHVYWTDWR 557 (841)
Q Consensus 528 ~~~i~~~~~----~l~~P~gla~~--~~~lY~td~~ 557 (841)
......... ....|.++++. +.+||++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~ 109 (346)
T d1jmxb_ 74 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109 (346)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred eeeeecccccccccCCceEEEEEecCCCEEEEEecC
Confidence 433222211 12357788884 4678888654
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=3.3e-07 Score=63.76 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=31.8
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCcccc
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
|||...+..|.+.|.|++|+|.|.|++||.+ +++.|+|
T Consensus 6 dEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~--~g~~C~D 43 (43)
T d1emoa1 6 DECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43 (43)
T ss_dssp CSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE--SSSCEEE
T ss_pred eccCCcCCCCCCEeECCCCCeEeECCCCccc--CCCcccC
Confidence 6787666677889999999999999999997 5667764
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.3e-07 Score=63.99 Aligned_cols=37 Identities=32% Similarity=0.536 Sum_probs=30.1
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecC-CCCcc
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQP-DLITC 169 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~-d~~~C 169 (841)
|||.. ++.|++.|+|++|||+|.|++||.|.. +++.|
T Consensus 3 dEC~~-~~~C~~~C~N~~Gsy~C~C~~Gy~l~g~~~~~C 40 (40)
T d1dx5i3 3 DECEN-GGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40 (40)
T ss_dssp CHHHH-CSSCSSEEEECSSSEEEEECSSSSCEEEESCCC
T ss_pred cccCC-CcCccCEeeCCCCCeEeECCCCCeeCCCCCCCC
Confidence 57864 579999999999999999999999853 44443
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=5.7e-07 Score=66.47 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=38.1
Q ss_pred cccccCCCCCCCcccCCC-CcEEecCCCceecCCCCcccccccc
Q psy14257 133 EKQCLRSDCHHDCYNTPE-GFMCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 133 eC~~~~~~C~~~C~~~~g-~~~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
+|+..++.|+|.|.++++ +|.|.|+.||.|.+|+++|....++
T Consensus 2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~f 45 (57)
T d1rfnb_ 2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 45 (57)
T ss_dssp CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEECSSS
T ss_pred ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccCCCc
Confidence 467778999999999975 7999999999999999999987754
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.16 E-value=6.5e-07 Score=61.25 Aligned_cols=36 Identities=42% Similarity=0.855 Sum_probs=31.8
Q ss_pred CCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCcc
Q psy14257 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMF 130 (841)
Q Consensus 95 C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~ 130 (841)
|++++|+|.+..+.||+.+++|||..+|.+|+||..
T Consensus 2 C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~ 37 (41)
T d2gtln2 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP 37 (41)
T ss_dssp SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred CCCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence 788999997432799999999999999999999965
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=5.1e-07 Score=63.21 Aligned_cols=38 Identities=37% Similarity=0.955 Sum_probs=34.2
Q ss_pred CCCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 92 APACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 92 ~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
+..|++++|.|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 3 p~~C~~~~f~C~~--g~CI~~~~~CDg~~DC~DgsDE~~~ 40 (45)
T d1d2la_ 3 PPQCQPGEFACAN--SRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CCBTTBTCEEETT--TEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCcCCCCCeEcCC--CCeEChhhhCcCcCcCCCCCCCCcC
Confidence 3578899999988 8999999999999999999999653
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.6e-07 Score=62.49 Aligned_cols=35 Identities=43% Similarity=1.053 Sum_probs=32.1
Q ss_pred CCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCcc
Q psy14257 94 ACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMF 130 (841)
Q Consensus 94 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~ 130 (841)
+|++++|.|.+ +.||+..++|||..+|.+|+||..
T Consensus 2 tC~~~~f~C~~--g~CI~~~~~CDg~~DC~DgsDE~~ 36 (39)
T d2fcwb2 2 TCGPASFQCNS--STCIPQLWACDNDPDCEDGSDEWP 36 (39)
T ss_dssp HCCTTEEECTT--SCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred ccCCCceEcCC--CCeEChhhcCCCCCCCCCCCcCCC
Confidence 47888999988 899999999999999999999964
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.8e-07 Score=63.28 Aligned_cols=33 Identities=27% Similarity=0.653 Sum_probs=30.0
Q ss_pred cccccCCCCCccCceeecCCCCceEEeecCCeeec
Q psy14257 171 YLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 171 ~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~ 205 (841)
|+|||+..+.|+|.|.|+ .|+|+|.|++||.|.
T Consensus 1 DidEC~~~~~C~~~C~N~--~Gsy~C~C~~Gy~l~ 33 (40)
T d1dx5i3 1 DIDECENGGFCSGVCHNL--PGTFECICGPDSALA 33 (40)
T ss_dssp ECCHHHHCSSCSSEEEEC--SSSEEEEECSSSSCE
T ss_pred CccccCCCcCccCEeeCC--CCCeEeECCCCCeeC
Confidence 578998668899999999 999999999999985
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.14 E-value=0.00099 Score=69.61 Aligned_cols=156 Identities=7% Similarity=-0.122 Sum_probs=94.7
Q ss_pred ccccccceEEEEec----CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC-------CCCCeEEEecC
Q psy14257 407 DNLWIGKNLYWVES----NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD-------SKAPRIERCSM 475 (841)
Q Consensus 407 avdw~~~~LY~tD~----~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~-------~~~~~I~r~~l 475 (841)
+..+.++..|++-. +..+|++.+.++......+..+. .| ++++.|++.+||++... .....|...++
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~ 103 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CC-cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence 44555677776642 24467788776654433333333 34 79999998999998742 11234777877
Q ss_pred CCCCcEEEEEeccc--CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEE
Q psy14257 476 SGEHRSVIVRVDLL--TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYW 553 (841)
Q Consensus 476 dG~~~~~i~~~~~~--~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~ 553 (841)
........+..... ......|.++++.+++++||+++...+.|..+++........+... ....+...+...++
T Consensus 104 ~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~v 179 (368)
T d1mdah_ 104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA----SCFHIHPGAAATHY 179 (368)
T ss_dssp TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS----SCCCCEEEETTEEE
T ss_pred CCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc----CcceEccCCCceEE
Confidence 64433333321110 1134568899999999999999988889999999877654444322 11233334555666
Q ss_pred EeCCCCeEEEEeccC
Q psy14257 554 TDWRTNSVIRANKWN 568 (841)
Q Consensus 554 td~~~~~i~~~~~~~ 568 (841)
+....+++..+....
T Consensus 180 ~~~~Dg~~~~~~~~~ 194 (368)
T d1mdah_ 180 LGSCPASLAASDLAA 194 (368)
T ss_dssp CCCCTTSCEEEECCS
T ss_pred EEcCCCCEEEEEecC
Confidence 655556655554433
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=8.7e-07 Score=65.04 Aligned_cols=41 Identities=32% Similarity=0.788 Sum_probs=34.2
Q ss_pred cccccCC-C--------CCccCceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 171 YLHPCEA-W--------GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 171 ~~~eC~~-~--------~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
|+|||.. . ..|+|.|+|+ +|+|+|.|++||.|..++++|++
T Consensus 3 DidEC~~~~~~c~~~~~~~c~~~C~Nt--~GsY~C~C~~Gy~l~~d~~tC~~ 52 (53)
T d1apqa_ 3 DLDECASRSKSGEEDPQPQCQHLCHNY--VGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTSSEEEEE--TTEEEEECSTTCEECTTSSCEEC
T ss_pred ecccccCCCCCcccCCCCCccCEeEcC--CCCeEeECCCCCeECCCCCceec
Confidence 6677752 1 2367899999 99999999999999999999975
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.11 E-value=5.6e-07 Score=61.93 Aligned_cols=37 Identities=41% Similarity=0.860 Sum_probs=32.4
Q ss_pred CCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCcc
Q psy14257 94 ACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMF 130 (841)
Q Consensus 94 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~ 130 (841)
.|.+++|+|.+.++.||+.+++|||..+|.+|+||..
T Consensus 2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~ 38 (42)
T d2gtlm2 2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP 38 (42)
T ss_dssp CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence 4788999997533789999999999999999999954
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Probab=98.11 E-value=5.7e-07 Score=62.14 Aligned_cols=38 Identities=39% Similarity=1.028 Sum_probs=31.8
Q ss_pred CCCCCCcccCCC---CCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 94 ACEPHEFDCQDV---LRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 94 ~C~~~~~~C~~~---~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
+|++++|.|.+. .+.|||.+++|||..||.+|+||..|
T Consensus 1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~C 41 (42)
T d1k7ba_ 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41 (42)
T ss_dssp CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhcc
Confidence 367788888653 14799999999999999999999876
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=5.1e-07 Score=62.80 Aligned_cols=38 Identities=29% Similarity=0.544 Sum_probs=32.0
Q ss_pred ccccccCCCCCC-CcccCCCCcEEecCCCceec-CCCCcc
Q psy14257 132 DEKQCLRSDCHH-DCYNTPEGFMCVCPRDMYLQ-PDLITC 169 (841)
Q Consensus 132 ~eC~~~~~~C~~-~C~~~~g~~~C~C~~Gy~l~-~d~~~C 169 (841)
|||...+..|.+ .|.|++|||+|.|++||.+. ++++.|
T Consensus 4 dEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~C 43 (44)
T d1lmja1 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43 (44)
T ss_dssp CTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSE
T ss_pred cccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcC
Confidence 678776777865 89999999999999999985 577776
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.8e-07 Score=62.13 Aligned_cols=42 Identities=24% Similarity=0.517 Sum_probs=34.7
Q ss_pred ccccccccCC-CCCccCceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 168 TCSYLHPCEA-WGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 168 ~C~~~~eC~~-~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
+|.|++||+. ...|.+.|.|+ .|+|.|.|++||.+. ++.|.+
T Consensus 1 sCvDidEC~~~~~~~~~~C~Nt--~Gsy~C~C~~Gy~~~--g~~C~D 43 (43)
T d1emoa1 1 SAVDMDECKEPDVCKHGQCINT--DGSYRCECPFGYILA--GNECVD 43 (43)
T ss_dssp CCCCCCSSSSTTSCSSSCCCCC--SSCCCCCCCTTEEES--SSCEEE
T ss_pred CCcceeccCCcCCCCCCEeECC--CCCeEeECCCCcccC--CCcccC
Confidence 5899999974 34567899999 999999999999984 567764
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=4.4e-07 Score=63.42 Aligned_cols=37 Identities=32% Similarity=0.832 Sum_probs=34.0
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
.+|.+++|.|.+ +.||+.+++|||..+|.+|+||..|
T Consensus 3 ~~C~~~~f~C~~--g~CI~~~~~CDg~~DC~DgsDE~~c 39 (44)
T d1j8ea_ 3 HSCSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSSCTTEEECTT--SCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred ccCCCCcEEcCC--CCEEChhhcCcCcccCCCCCcCCCC
Confidence 468889999988 8999999999999999999999876
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=6.2e-07 Score=62.32 Aligned_cols=26 Identities=38% Similarity=0.718 Sum_probs=23.6
Q ss_pred eeccCccCcCCcCCCCCCCCCCCCCC
Q psy14257 2 TCIIAYWKCDGDEDCKDGSDELAEHC 27 (841)
Q Consensus 2 ~Ci~~~~~Cdg~~dC~dgsde~~~~C 27 (841)
+|||..|+|||..||.|||||..+.|
T Consensus 18 ~CI~~~~~CDg~~DC~DgsDE~~~~C 43 (44)
T d1xfea2 18 ECITLDKVCNMARDCRDWSDEPIKEC 43 (44)
T ss_dssp CEEESTTTTCSSCCCSSCSSSCTTTS
T ss_pred CeEchhhcCCCCCCCCCCCccCcccC
Confidence 69999999999999999999985555
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=5.3e-07 Score=62.74 Aligned_cols=40 Identities=30% Similarity=0.749 Sum_probs=34.9
Q ss_pred ccccccC-CCCCcc-CceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 170 SYLHPCE-AWGTCS-QDCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 170 ~~~~eC~-~~~~Cs-~~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
+|++||. ..+.|. +.|+|+ .|+|+|.|++||.+..++++|
T Consensus 1 qDinEC~~~~~~c~~~~C~Nt--~Gsy~C~C~~Gy~l~~~~~~C 42 (43)
T d1uzka2 1 EDIDECQELPGLCQGGKCINT--FGSFQCRCPTGYYLNEDTRVC 42 (43)
T ss_dssp EECCHHHHCGGGGBTSEEEEC--SSCEEEECCTTCCBCTTTCBB
T ss_pred CCcccccCCCCCcCCCEEECC--CCCeEeECCCCCeECcCCCcc
Confidence 4789997 556775 689999 999999999999999998887
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.07 E-value=7.8e-06 Score=87.92 Aligned_cols=229 Identities=12% Similarity=0.033 Sum_probs=137.9
Q ss_pred eeEEEeeecCCCCCCCCCCEEEEccCCCccccccc-cCcCCCceEEEEccCCEEEEEeCCCCeEEE--------------
Q psy14257 311 LYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT-KNIQWPSSLVIDYNQDILYWCDSHLNTVES-------------- 375 (841)
Q Consensus 311 ~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~-~~~~~P~glavD~~~~~lYwaD~~~~~I~~-------------- 375 (841)
-|+|.+++. +++|.+++++......++. .....|.|+++.++++++|++....+.+..
T Consensus 84 r~lfV~d~~-------~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~ 156 (441)
T d1qnia2 84 KYLFINDKA-------NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYT 156 (441)
T ss_dssp EEEEEEETT-------TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEE
T ss_pred CEEEEEcCC-------CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccc
Confidence 456666654 4599999987554444433 457789999999999999998765444421
Q ss_pred -E-EecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEEEc
Q psy14257 376 -V-RVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIALD 452 (841)
Q Consensus 376 -~-~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd 452 (841)
+ -+|....++...+.+-+.+. ..+++..++.+|++....+.+.+.+.. ......+.. ...|.++++.
T Consensus 157 ~~~~iD~~t~~v~~qI~v~~~p~--------~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v--~n~p~~~~~~ 226 (441)
T d1qnia2 157 MFTAIDAETMDVAWQVIVDGNLD--------NTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVV--FNVERIAAAV 226 (441)
T ss_dssp EEEEEETTTCSEEEEEEESSCCC--------CEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEE--EEHHHHHHHH
T ss_pred eEEeecCccceeeEEEecCCCcc--------ceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEe--CCccceEEEe
Confidence 1 12333333333332222221 124555668899998776655443322 222222211 2468888888
Q ss_pred CCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC-------
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG------- 525 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG------- 525 (841)
+.++++++.+. ..+.............+. .-+.|.|+++++++++||++....+.|..++++.
T Consensus 227 ~dGk~~~v~~~----~v~vvd~~~~~~v~~~IP------vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~ 296 (441)
T d1qnia2 227 KAGNFKTIGDS----KVPVVDGRGESEFTRYIP------VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED 296 (441)
T ss_dssp HTTCCBCCTTC----CCCEEECSSSCSSEEEEC------CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred cCCCEEEeCCC----CcEEEEcccCCceEEEEe------CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc
Confidence 88777766432 222222223333333332 3467999999999999999999999999999742
Q ss_pred --CeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeEEEEec
Q psy14257 526 --KDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 526 --~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~ 566 (841)
..+.++....+..-.|..-++.. ++.|-+-.-...|.+.+.
T Consensus 297 ~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 297 KIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp SSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred cCCcceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence 11222332222223466667654 789988888888888874
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=6.4e-07 Score=62.00 Aligned_cols=39 Identities=28% Similarity=0.769 Sum_probs=34.1
Q ss_pred cccccC-CCCCccC-ceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 171 YLHPCE-AWGTCSQ-DCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 171 ~~~eC~-~~~~Cs~-~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
|+|||. .+..|.+ .|.|+ .|+|+|.|++||.+..++++|
T Consensus 1 DidEC~~~~~~C~~~~C~Nt--~Gsy~C~C~~Gy~l~~d~~~C 41 (42)
T d1lmja2 1 DIDECQRDPLLCRGGVCHNT--EGSYRCECPPGHQLSPNISAC 41 (42)
T ss_dssp ECCHHHHCSSTTTTSEEEEE--TTEEEEESCTTSCCCSSSCCC
T ss_pred CccccCCCCCCCCCCEeECC--CCCeEEeCCCCCeECcCCCcc
Confidence 578996 5677866 89999 999999999999999888877
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.03 E-value=0.00052 Score=73.98 Aligned_cols=204 Identities=11% Similarity=-0.043 Sum_probs=132.5
Q ss_pred eEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccc
Q psy14257 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLV 344 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~ 344 (841)
++++....++|...++..+. ....+..+ ..|.++++.|.++.+|+. . .++.|..++++......+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~---v~~~~~~g-~~~~~v~fSpDG~~l~~~--s--------~dg~v~~~d~~t~~~~~~~ 99 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYE---IKTVLDTG-YAVHISRLSASGRYLFVI--G--------RDGKVNMIDLWMKEPTTVA 99 (432)
T ss_dssp EEEEETTTTEEEEEETTTCC---EEEEEECS-SCEEEEEECTTSCEEEEE--E--------TTSEEEEEETTSSSCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCc---EEEEEeCC-CCeeEEEECCCCCEEEEE--c--------CCCCEEEEEeeCCCceEEE
Confidence 56777777888888777654 23334444 479999999988766652 1 2468889988754443332
Q ss_pred c-cCcCCCceEEEEc----cCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCC--CCccccccceEEE
Q psy14257 345 T-KNIQWPSSLVIDY----NQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR--PEDNLWIGKNLYW 417 (841)
Q Consensus 345 ~-~~~~~P~glavD~----~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~--~~avdw~~~~LY~ 417 (841)
. .....|.++++.. ++++||++....+.|..++.........+.......+...-.+..+ .+..+..+..+|+
T Consensus 100 ~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v 179 (432)
T d1qksa2 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179 (432)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred EEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEE
Confidence 2 3345688888764 6789999999999999999877665544432211111000000000 0123344577889
Q ss_pred EecCCCcEEEEccCC-ceEEE-EecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEE
Q psy14257 418 VESNLDQIEVAKLSG-QFRRT-LIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 418 tD~~~~~I~v~~~~G-~~~~~-l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~ 485 (841)
+-...+.|.+.+... +..++ -+. .-..|.+++++|.+.++|.+... ...|...+.+.........
T Consensus 180 s~~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~--~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 180 NVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANA--RNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp EETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEE
T ss_pred EEccCCeEEEEEccCCCcceEEEEc-ccCccccceECCCCCEEEEeccc--cceEEEeecccceEEEEec
Confidence 988889999888754 33322 122 22579999999998899999876 6788888887665555554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.02 E-value=0.01 Score=60.41 Aligned_cols=116 Identities=10% Similarity=0.031 Sum_probs=72.4
Q ss_pred cccceEEEEecC----CCcEEEEccCCc-eEEEEecCCCCCceeEEEcCCCCeEEEEecC-------CCCCeEEEecCCC
Q psy14257 410 WIGKNLYWVESN----LDQIEVAKLSGQ-FRRTLIAGDMESPRAIALDPRFGLLFWTDWD-------SKAPRIERCSMSG 477 (841)
Q Consensus 410 w~~~~LY~tD~~----~~~I~v~~~~G~-~~~~l~~~~l~~P~giavd~~~g~Ly~td~~-------~~~~~I~r~~ldG 477 (841)
..+.++|+++.. ...|++++.+.. ...++- .+ ..| +++++|++.+||+++.. ...+.|...++..
T Consensus 11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g-~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t 87 (355)
T d2bbkh_ 11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GG-FLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 87 (355)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-EC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CC-CCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence 345889998754 346888888654 344432 22 234 79999999999998632 1134677777754
Q ss_pred CCcEEEEEeccc--CCCCCCceeEEEeccCCEEEEEeCCC-CeEEEEEcCCCee
Q psy14257 478 EHRSVIVRVDLL--TSRGAWPNGLTLDYQLTRIYWIDAKS-DSIHTVTYDGKDH 528 (841)
Q Consensus 478 ~~~~~i~~~~~~--~~~~~~P~glalD~~~~~LYw~d~~~-~~I~~~~~dG~~~ 528 (841)
......+..... ......|.++++.+.++++|+++... ..+...+......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 433333221110 11235689999999999999988654 4555666655443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.98 E-value=0.0011 Score=67.19 Aligned_cols=283 Identities=10% Similarity=-0.001 Sum_probs=149.6
Q ss_pred cCccccccccccccEEEEec--c-ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCC----CCCc
Q psy14257 227 NRHELRGVDLRTFNVIALIS--S-LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG----LSTA 299 (841)
Q Consensus 227 ~~~~I~~~~~~~~~~~~l~~--~-~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~----l~~p 299 (841)
..+.|..+++...+....++ . ...+.++.|....+. ||.+....+.|...++..+. ....+-... ...+
T Consensus 9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~--l~v~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~ 84 (337)
T d1pbyb_ 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI--AYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSL 84 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE--EEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECT
T ss_pred CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCE--EEEEECCCCeEEEEECCCCc--EEEEEecCCCcccccce
Confidence 34678888887765443332 1 234667777665444 89998888999999887664 222221111 2357
Q ss_pred cceEEeeecCceeEEEeeecCCC--CCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 300 EGLAVDWIGKNLYMFWAFWSLSP--SNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 300 ~giavD~~~~~~y~~~td~~~~~--~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
.++++.+.++.+|+.-.+-.... .....+++...+.........+. ....|.++++++++.++|+++. .+..++
T Consensus 85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~~d 160 (337)
T d1pbyb_ 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR---DLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS---SEEEEE
T ss_pred eeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC---Ccceee
Confidence 88999987755554322211000 01123455555554332222222 3456999999999999999863 344444
Q ss_pred ecCCccEEEEeeeeecCCCcccc-CCCCCCccccccceEEE----Ee----------cCCCcEEEEccC-CceEEEEecC
Q psy14257 378 VDGSERTVSFNLEVLGSDSRVGI-PNCRPEDNLWIGKNLYW----VE----------SNLDQIEVAKLS-GQFRRTLIAG 441 (841)
Q Consensus 378 ldG~~~~~~~~~~~~~~~~~~~i-~~~~~~avdw~~~~LY~----tD----------~~~~~I~v~~~~-G~~~~~l~~~ 441 (841)
............. ........ +.......+......++ +. ...+.+.+.++. |.........
T Consensus 161 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
T d1pbyb_ 161 PEAGTLVEDKPIQ--SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp TTTTEEEEEECST--TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred eecCcEEEEeecC--CccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence 4433222211111 00000000 00000000000011111 10 011234455543 3333332333
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
.-..+..+++.+...++|..+ ..|...++........+. .-..|.+|++.+++++||++.. .+.|..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~~~~------~~~~~~~~~~s~dG~~l~v~~~-~~~i~v~ 306 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVP------LPHSYYSVNVSTDGSTVWLGGA-LGDLAAY 306 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEE------CSSCCCEEEECTTSCEEEEESB-SSEEEEE
T ss_pred CCcceEEEEecccceEEEEcc-----ccEEEEECCCCcEEEEEc------CCCCEEEEEECCCCCEEEEEeC-CCcEEEE
Confidence 345688899999988888776 357776665433322222 2356899999999999998865 5679999
Q ss_pred EcCC-CeeEEE
Q psy14257 522 TYDG-KDHHVV 531 (841)
Q Consensus 522 ~~dG-~~~~~i 531 (841)
|... +.+.++
T Consensus 307 D~~t~~~v~~i 317 (337)
T d1pbyb_ 307 DAETLEKKGQV 317 (337)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCcEEEEE
Confidence 9874 444444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.96 E-value=0.0011 Score=68.17 Aligned_cols=260 Identities=11% Similarity=0.013 Sum_probs=132.6
Q ss_pred ceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc-------cCcCCCceEEEEccCCEEEEEeCCC-Ce
Q psy14257 301 GLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT-------KNIQWPSSLVIDYNQDILYWCDSHL-NT 372 (841)
Q Consensus 301 giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~-------~~~~~P~glavD~~~~~lYwaD~~~-~~ 372 (841)
++|+.|.++.+|+.-...........++.|..+++........+. .....|.++++.++++++|+++... ..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 130 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence 689988887676642211100000123467777765433322211 1234689999999999999998754 45
Q ss_pred EEEEEecCCccEEEEeeee--ecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEE
Q psy14257 373 VESVRVDGSERTVSFNLEV--LGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIA 450 (841)
Q Consensus 373 I~~~~ldG~~~~~~~~~~~--~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~gia 450 (841)
+...+.........+.... ...+. .....+++...+..+||.....+.+.+.+...... .........+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 201 (355)
T d2bbkh_ 131 VGVVDLEGKAFKRMLDVPDCYHIFPT----APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPA 201 (355)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEE----ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCE
T ss_pred eeeeecCCCcEeeEEecCCcceEeec----CCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeecc
Confidence 5555655443322221110 00000 00000011122244555544444444333221100 0000111234
Q ss_pred EcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC----CC---CCCceeEEEeccCCEEEEEeCC---------
Q psy14257 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT----SR---GAWPNGLTLDYQLTRIYWIDAK--------- 514 (841)
Q Consensus 451 vd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~----~~---~~~P~glalD~~~~~LYw~d~~--------- 514 (841)
..+..+.+.|+.. ..+++..++++.....+....... .. -..+..+++.+.+.++||+...
T Consensus 202 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 278 (355)
T d2bbkh_ 202 YSQKAGRLVWPTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278 (355)
T ss_dssp EETTTTEEEEEBT---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred ccCCCCeEEEecC---CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCC
Confidence 4445555555543 356777776655443332110000 00 0123458898889999987532
Q ss_pred CCeEEEEEcCCC-eeEEEEcCCCCCCcceEEEEe-cC--eEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 515 SDSIHTVTYDGK-DHHVVLSNHDSLTHPFAIALF-EN--HVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 515 ~~~I~~~~~dG~-~~~~i~~~~~~l~~P~gla~~-~~--~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
.+.|..+++... ....+... ..|.++++. ++ .||++....+.|..++..+|+.+..+.
T Consensus 279 ~~~v~v~d~~t~~~~~~~~~~----~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 279 SRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp EEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CCeEEEEeCCCCcEEEEecCC----CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence 247888887744 33333221 357888884 34 378888888999999988888776664
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1.9e-06 Score=62.51 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=35.6
Q ss_pred ccccCCCCCCCcccCCCC-cEEecCCCceecCCCCccccccc
Q psy14257 134 KQCLRSDCHHDCYNTPEG-FMCVCPRDMYLQPDLITCSYLHP 174 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~g~-~~C~C~~Gy~l~~d~~~C~~~~e 174 (841)
|+..++.|+|.|.+++++ |.|.|+.||.|.+|+++|....+
T Consensus 2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~ 43 (53)
T d2bz6l1 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 43 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSS
T ss_pred CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCCCc
Confidence 566788999999999875 78999999999999999986543
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=7e-06 Score=56.94 Aligned_cols=40 Identities=25% Similarity=0.686 Sum_probs=33.1
Q ss_pred cccccC-CCCCccC-ceeecCCCCceEEeecCCeeec-CCCCceE
Q psy14257 171 YLHPCE-AWGTCSQ-DCEPSVSNNSYKCTCHAGYELE-PDMFTCK 212 (841)
Q Consensus 171 ~~~eC~-~~~~Cs~-~C~~~~~~g~~~C~C~~G~~l~-~d~~~C~ 212 (841)
|+|||. ....|.+ .|.|+ .|+|+|.|++||.+. .+++.|.
T Consensus 2 DidEC~~~~~~C~~~~C~Nt--~Gsy~C~C~~Gy~~~~~~g~~Cv 44 (44)
T d1lmja1 2 DIDECRISPDLCGRGQCVNT--PGDFECKCDEGYESGFMMMKNCM 44 (44)
T ss_dssp CCCTTTTCSSTTTTSCEEEE--TTEEEECCCSSEEECTTTSSSEE
T ss_pred cccccCCCCCCCCCCEeEcC--CCCeEEeCCCCCccCCCCCCcCC
Confidence 689997 4567766 89999 999999999999986 5677763
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.78 E-value=0.00018 Score=76.96 Aligned_cols=309 Identities=16% Similarity=0.132 Sum_probs=166.2
Q ss_pred CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEe
Q psy14257 360 QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLI 439 (841)
Q Consensus 360 ~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~ 439 (841)
+-.+||+....+.|..+++... +++..+.++..+. ...|..+..+.+|..... ...
T Consensus 10 e~y~f~Sgg~sG~V~V~dlpS~--r~l~~IpVfspd~----------------~~g~g~~~es~~vl~~~~------~~~ 65 (441)
T d1qnia2 10 EYYGFWSGGHQGEVRVLGVPSM--RELMRIPVFNVDS----------------ATGWGITNESKEILGGDQ------QYL 65 (441)
T ss_dssp SEEEEEECBTTCCEEEEEETTT--EEEEEECSSSBCT----------------TTCTTTSHHHHHHHCSSS------CCS
T ss_pred CEEEEEeCCCCCcEEEEeCCCC--cEEEEEEeEcCCC----------------CEEEEECCccceEEeccc------ccc
Confidence 3467888888999999887433 2233333333332 122222222222211100 112
Q ss_pred cCCCCCceeEEE--cCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCe
Q psy14257 440 AGDMESPRAIAL--DPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDS 517 (841)
Q Consensus 440 ~~~l~~P~giav--d~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~ 517 (841)
.....+|..... .|++++||+++.. +++|.+.+++--....++.. .....|.|+++.+.++++|++......
T Consensus 66 ~gd~hhP~~s~t~gtpDGr~lfV~d~~--~~rVavIDl~t~k~~~ii~i----P~g~gphgi~~spdg~t~YV~~~~~~~ 139 (441)
T d1qnia2 66 NGDCHHPHISMTDGRYDGKYLFINDKA--NTRVARIRLDIMKTDKITHI----PNVQAIHGLRLQKVPKTNYVFCNAEFV 139 (441)
T ss_dssp CCCBCCCEEEEETTEEEEEEEEEEETT--TTEEEEEETTTTEEEEEEEC----TTCCCEEEEEECCSSBCCEEEEEECSC
T ss_pred cCcccCCCcceecccCCCCEEEEEcCC--CCEEEEEECCCCcEeeEEec----CCCCCccceEEeccCCEEEEEeccCCc
Confidence 234556755443 3567899999988 88999999975544444442 356789999999889999998755444
Q ss_pred E------------------EEEEcCCCeeE-EEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 518 I------------------HTVTYDGKDHH-VVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 518 I------------------~~~~~dG~~~~-~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
+ ..++....... .+... ..|.++++ .+.++|++...++.+..++..+......+.
T Consensus 140 v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~----~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~ 215 (441)
T d1qnia2 140 IPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD----GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV 215 (441)
T ss_dssp EESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE
T ss_pred ccccCcccccccccccceEEeecCccceeeEEEecC----CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE
Confidence 3 33444433221 12111 35677776 567899999887766555444444332221
Q ss_pred cccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCC
Q psy14257 577 RTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPY 656 (841)
Q Consensus 577 ~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~ 656 (841)
.. ..|.... ..+.+.+. .+...+ +..+... ..
T Consensus 216 v~-n~p~~~~---------------------~~~dGk~~------------------------~v~~~~-v~vvd~~-~~ 247 (441)
T d1qnia2 216 VF-NVERIAA---------------------AVKAGNFK------------------------TIGDSK-VPVVDGR-GE 247 (441)
T ss_dssp EE-EHHHHHH---------------------HHHTTCCB------------------------CCTTCC-CCEEECS-SS
T ss_pred eC-CccceEE---------------------EecCCCEE------------------------EeCCCC-cEEEEcc-cC
Confidence 00 0011100 01111110 000001 1111110 11
Q ss_pred ccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCC
Q psy14257 657 YHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAG 736 (841)
Q Consensus 657 ~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 736 (841)
......+|++ ..|.+++++|..+++|.+....++|..+++.--. .+ ++ ..+..+..+. ++ ...+
T Consensus 248 ~~v~~~IPvg--ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~--~~----~~---~~~~~~~~~~-~~----~~~g 311 (441)
T d1qnia2 248 SEFTRYIPVP--KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD--DL----FE---DKIELRDTIV-AE----PELG 311 (441)
T ss_dssp CSSEEEECCB--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH--HH----TT---TSSCGGGGEE-EC----CBCC
T ss_pred CceEEEEeCC--CCccCceECCCCCEEEEeCCcCCcEEEEEeehhh--hH----hh---ccCCcceEEE-ee----cccc
Confidence 1112233443 5688999999999999999999999999875311 00 00 0111111111 11 1112
Q ss_pred CCCcceeEEeecCCcEEEEecCCCCCeEEEEecC
Q psy14257 737 ISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLE 770 (841)
Q Consensus 737 ~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~ 770 (841)
-.|..-++|.. ++.|-+ -.....|...+++
T Consensus 312 -lgplh~~fd~~-g~~yts--~~~ds~v~kw~~~ 341 (441)
T d1qnia2 312 -LGPLHTTFDGR-GNAYTT--LFIDSQVCKWNIA 341 (441)
T ss_dssp -SCEEEEEECSS-SEEEEE--ETTTTEEEEEEHH
T ss_pred -cCcccceecCC-ceEEEc--ccccceEEEeccc
Confidence 25777899976 478877 3467788888875
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.24 E-value=0.12 Score=51.52 Aligned_cols=278 Identities=8% Similarity=-0.053 Sum_probs=137.0
Q ss_pred CCCeEEeccCccccccccccccEEEEecc-ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCC
Q psy14257 219 SSPFVIFSNRHELRGVDLRTFNVIALISS-LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLS 297 (841)
Q Consensus 219 ~~p~ll~s~~~~I~~~~~~~~~~~~l~~~-~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~ 297 (841)
....+++.+.+.|...+++......+..+ ...+.+++|.+. ++ +..+-...+.|...++..+.. ..+..+...-.
T Consensus 28 ~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~-g~--~latg~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 103 (311)
T d1nr0a1 28 AGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GY--YCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSG 103 (311)
T ss_dssp TSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SS--EEEEEETTSEEEEEESSSTTC-CEEEEEECSSS
T ss_pred CCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC-CC--eEeccccCceEeeeeeecccc-ccccccccccC
Confidence 34456666666776666665544334443 345778888775 44 555666778888888765541 12223332223
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
....+++.+.+ -+++..- +.....+...+.+.................|++++.+
T Consensus 104 ~v~~v~~s~d~--~~l~~~~------~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~----------------- 158 (311)
T d1nr0a1 104 PVKDISWDSES--KRIAAVG------EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR----------------- 158 (311)
T ss_dssp CEEEEEECTTS--CEEEEEE------CCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS-----------------
T ss_pred ccccccccccc--ccccccc------ccccccccccccccccccccccccccccccccccccc-----------------
Confidence 34555555433 2222111 1112233344433211111111111111222222221
Q ss_pred ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCe
Q psy14257 378 VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGL 457 (841)
Q Consensus 378 ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~ 457 (841)
..++++-...+.|.+.++..................++++|...+
T Consensus 159 -----------------------------------~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 203 (311)
T d1nr0a1 159 -----------------------------------PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203 (311)
T ss_dssp -----------------------------------SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred -----------------------------------eeeecccccccccccccccccccccccccccccccccccCccccc
Confidence 334555555567777777655544444444455689999998666
Q ss_pred EEEEecCCCCCeEEEecCCCCCcEEEEEecccC--CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee-EEEEcC
Q psy14257 458 LFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT--SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH-HVVLSN 534 (841)
Q Consensus 458 Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~--~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~-~~i~~~ 534 (841)
|+.... .+.|...++............... ..-.....+++.+.+..|+... ..+.|...++..... +++...
T Consensus 204 l~~~~~---d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iwd~~t~~~~~~l~~~ 279 (311)
T d1nr0a1 204 FASTGG---DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNVATLKVEKTIPVG 279 (311)
T ss_dssp EEEEET---TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECC
T ss_pred cccccc---cccccccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCCeEEEEECCCCcEEEEEECC
Confidence 665543 356666665433322222210000 0112356889987766666544 456788888765443 334322
Q ss_pred CCCCCcceEEEEecCeEEEEeCCCCeEEEEe
Q psy14257 535 HDSLTHPFAIALFENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 535 ~~~l~~P~gla~~~~~lY~td~~~~~i~~~~ 565 (841)
........++...+++|+... ..+.|.-.|
T Consensus 280 ~~~~~~~~~~~~~~~~l~s~s-~dG~i~~wd 309 (311)
T d1nr0a1 280 TRIEDQQLGIIWTKQALVSIS-ANGFINFVN 309 (311)
T ss_dssp SSGGGCEEEEEECSSCEEEEE-TTCCEEEEE
T ss_pred CCccceEEEEEecCCEEEEEE-CCCEEEEEe
Confidence 211122344555566666554 456665544
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=7.7e-05 Score=51.30 Aligned_cols=35 Identities=31% Similarity=0.576 Sum_probs=28.3
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
+||...+.+|.+ +|+|+.++|+|.|++||. |+.|+
T Consensus 4 deC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~----G~~Ce 40 (42)
T d2vj3a1 4 DECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCE 40 (42)
T ss_dssp CTTTSSSCSSSTTCEEEECSSSEEEECCTTEE----STTSC
T ss_pred ccccCCCCCCCCCcEeECCCCCEEeECCCCCc----CCCCc
Confidence 567665668865 899999999999999997 55664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.13 E-value=0.075 Score=53.42 Aligned_cols=122 Identities=8% Similarity=-0.043 Sum_probs=80.3
Q ss_pred CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEE
Q psy14257 422 LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTL 501 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glal 501 (841)
.++|++.++++...+.+. .-...+.+++.|+.++|+++... ....|+..++++...+.+. ........+++
T Consensus 23 ~g~v~v~d~~~~~~~~~~--~~~~v~~~~~spDg~~l~~~~~~-~g~~v~v~d~~~~~~~~~~------~~~~~v~~~~~ 93 (360)
T d1k32a3 23 RGQAFIQDVSGTYVLKVP--EPLRIRYVRRGGDTKVAFIHGTR-EGDFLGIYDYRTGKAEKFE------ENLGNVFAMGV 93 (360)
T ss_dssp TTEEEEECTTSSBEEECS--CCSCEEEEEECSSSEEEEEEEET-TEEEEEEEETTTCCEEECC------CCCCSEEEEEE
T ss_pred CCeEEEEECCCCcEEEcc--CCCCEEEEEECCCCCEEEEEEcC-CCCEEEEEECCCCcEEEee------CCCceEEeeee
Confidence 357777777776554432 34578999999998888876543 1346778888776555443 34456789999
Q ss_pred eccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEe
Q psy14257 502 DYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTD 555 (841)
Q Consensus 502 D~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td 555 (841)
.+.+..|..... .+.+...++++.....+.... ......+++. +.+|.++.
T Consensus 94 spdg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 94 DRNGKFAVVAND-RFEIMTVDLETGKPTVIERSR--EAMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp CTTSSEEEEEET-TSEEEEEETTTCCEEEEEECS--SSCCCCEEECTTSCEEEEEE
T ss_pred cccccccceecc-ccccccccccccceeeeeecc--cccccchhhccceeeeeeec
Confidence 987777776554 678888999887766665543 2233456663 45666654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.05 E-value=0.19 Score=50.11 Aligned_cols=152 Identities=8% Similarity=-0.028 Sum_probs=85.1
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc--EEEE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR--SVIV 484 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~--~~i~ 484 (841)
+.+..++.|+++. .+.|.+.+++......+..+.......+++.|.+.+|..... .+.|...++..... ....
T Consensus 24 a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~---dg~i~iwd~~~~~~~~~~~~ 98 (311)
T d1nr0a1 24 GNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV---HGNVRIWDTTQTTHILKTTI 98 (311)
T ss_dssp EECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEESSSTTCCEEEEE
T ss_pred EEcCCCCEEEEEe--CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEecccc---CceEeeeeeecccccccccc
Confidence 4555667777764 346888887654333334444567789999998666655554 35666666654432 2222
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEeCC-CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeE
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWIDAK-SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSV 561 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d~~-~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i 561 (841)
. ..-.....+++.+.+..|..+-.. ...+...+++-......+..+ ......+++. +.+++++-...+.|
T Consensus 99 ~-----~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h--~~~v~~v~~~~~~~~~l~sgs~d~~i 171 (311)
T d1nr0a1 99 P-----VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ--ARAMNSVDFKPSRPFRIISGSDDNTV 171 (311)
T ss_dssp E-----CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC--SSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred c-----cccCcccccccccccccccccccccccccccccccccccccccccc--ccccccccccccceeeeccccccccc
Confidence 2 223445789998877777665432 234566666643221111111 1234566663 34566765556666
Q ss_pred EEEeccCCc
Q psy14257 562 IRANKWNGS 570 (841)
Q Consensus 562 ~~~~~~~g~ 570 (841)
...+..+++
T Consensus 172 ~i~d~~~~~ 180 (311)
T d1nr0a1 172 AIFEGPPFK 180 (311)
T ss_dssp EEEETTTBE
T ss_pred ccccccccc
Confidence 666654443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.05 E-value=0.017 Score=59.17 Aligned_cols=196 Identities=12% Similarity=0.134 Sum_probs=105.9
Q ss_pred cCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecC-CCccccCCCCCCccccccceEEEEecC--CCcEEEEccCCc--
Q psy14257 359 NQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGS-DSRVGIPNCRPEDNLWIGKNLYWVESN--LDQIEVAKLSGQ-- 433 (841)
Q Consensus 359 ~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~-~~~~~i~~~~~~avdw~~~~LY~tD~~--~~~I~v~~~~G~-- 433 (841)
....|+=+|.+.+ |+.++|+|+....+- .+.++. +..-+++.. +-....++.++.. +.+|.++.+++.
T Consensus 39 ~~SlI~gTdK~~G-l~vYdL~G~~l~~~~-~Gr~NNVDvr~~~~l~-----~~~~di~vasnR~~~~~~l~~~~id~~~~ 111 (353)
T d1h6la_ 39 QNSKLITTNKKSG-LAVYSLEGKMLHSYH-TGKLNNVDIRYDFPLN-----GKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (353)
T ss_dssp GGCEEEEEETTSC-CEEEETTCCEEEECC-SSCEEEEEEEEEEEET-----TEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred CccEEEEEcCcCC-EEEEcCCCcEEEecc-cCCcCccccccccccC-----CcceEEEEEeCCcCcceeEEEEEecCccc
Confidence 3455666666554 888888887665431 100000 000000000 0000124455543 335655555432
Q ss_pred eEEEEe------cCCCCCceeEEE--cCCCCeEEEEecCCCCCeEEEecC--CCCCc--EEEEEecccCCCCCCceeEEE
Q psy14257 434 FRRTLI------AGDMESPRAIAL--DPRFGLLFWTDWDSKAPRIERCSM--SGEHR--SVIVRVDLLTSRGAWPNGLTL 501 (841)
Q Consensus 434 ~~~~l~------~~~l~~P~giav--d~~~g~Ly~td~~~~~~~I~r~~l--dG~~~--~~i~~~~~~~~~~~~P~glal 501 (841)
....+. ...+..|.||++ ++..|.+|..-.. +.+.++...+ ++... ..++.. + ..-..+.|.++
T Consensus 112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k~G~v~q~~l~~~~~g~v~~~lvr~-f--~~~~q~EGCVv 187 (353)
T d1h6la_ 112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-KEGEFEQYELNADKNGYISGKKVRA-F--KMNSQTEGMAA 187 (353)
T ss_dssp EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSSEEEEEEEE-E--ECSSCEEEEEE
T ss_pred ccccccccccccccccCcceEEEEEecCCCCeEEEEEEc-CCceEEEEEEEcCCCCceeeEeeec-c--CCCCccceEEE
Confidence 222221 123567899999 7777855443322 2456554444 44332 222211 0 23346889999
Q ss_pred eccCCEEEEEeCCCCeEEEEEcC---CCeeEEEEcCC--CCCCcceEEEEe-----cCeEEEEeCCCCeEEEEec
Q psy14257 502 DYQLTRIYWIDAKSDSIHTVTYD---GKDHHVVLSNH--DSLTHPFAIALF-----ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 502 D~~~~~LYw~d~~~~~I~~~~~d---G~~~~~i~~~~--~~l~~P~gla~~-----~~~lY~td~~~~~i~~~~~ 566 (841)
|..+++||+++.. ..|++++++ +.....+.... .....|-||+++ +++|.+++.+.++....+.
T Consensus 188 Dde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 188 DDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp ETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred eCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence 9999999999984 578888775 23344443321 235679999986 2589999888777655554
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.98 E-value=7e-05 Score=50.54 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=26.0
Q ss_pred CCCCCC--CcccCCCCcEEecCCCceecCCCCcccc
Q psy14257 138 RSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 138 ~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
.+.|+. .|.|++|+|.|.|++||. .||++|..
T Consensus 6 ~~~C~~~A~C~Nt~Gsy~C~C~~Gy~--GdG~~C~~ 39 (40)
T d1gl4a2 6 RHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVA 39 (40)
T ss_dssp GGGSCTTEEEEECSSCEEEEECTTEE--ECSSSEEE
T ss_pred CCCCCCCCEeecCCCCeEeECCCCCc--CCCCEeeC
Confidence 346653 799999999999999998 47888864
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.041 Score=53.50 Aligned_cols=209 Identities=10% Similarity=0.036 Sum_probs=111.8
Q ss_pred ceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecC
Q psy14257 301 GLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDG 380 (841)
Q Consensus 301 giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG 380 (841)
..+.-|.|+.+.+. ++. .....+.....++..++.+. ..........+.+++.+|++.-...+.........
T Consensus 43 sP~wSPDGk~IAf~-~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~ 114 (269)
T d2hqsa1 43 SPAWSPDGSKLAYV-TFE------SGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 114 (269)
T ss_dssp EEEECTTSSEEEEE-ECT------TSSCEEEEEETTTCCEEEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred eeEECCCCCEEEEE-Eee------ccCcceeeeecccCceeEEe-eeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence 45566666555432 221 12235666777766555443 23455566777788777776655443322222222
Q ss_pred CccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeE
Q psy14257 381 SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLL 458 (841)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~L 458 (841)
........... ..... .....+..+.++++... ...|.+.++++.....+.. ........++.|....+
T Consensus 115 ~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~~ 185 (269)
T d2hqsa1 115 ASGQIRQVTDG---RSNNT-----EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFM 185 (269)
T ss_dssp TTCCEEECCCC---SSCEE-----EEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEE
T ss_pred ccccceeeeec---ccccc-----ccccccccccceecccccCCceEeeeecccccceeeec-cccccccccccccccee
Confidence 11111100000 00000 00112233555655433 3467777777765544332 22344556788888888
Q ss_pred EEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCCeeEEEEc
Q psy14257 459 FWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 459 y~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~ 533 (841)
++.........|+..+.++...+.+.. ...-...++.+++++|+++... ...|+.++++|+..+.+..
T Consensus 186 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~ 255 (269)
T d2hqsa1 186 VMVSSNGGQQHIAKQDLATGGVQVLSS-------TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 255 (269)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEECCC-------SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred EEEeecCCceeeeEeecccccceEeec-------CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC
Confidence 887655445678888877766554432 1222456788888988776532 3478899999987766543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.86 E-value=0.025 Score=58.73 Aligned_cols=198 Identities=13% Similarity=0.112 Sum_probs=116.8
Q ss_pred ccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC---------------
Q psy14257 358 YNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL--------------- 422 (841)
Q Consensus 358 ~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~--------------- 422 (841)
+++++||+.|..+.+|-|++++.-....+......... -|+ .+.-..+..|+.....
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~--HG~------r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGI--HGL------RPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSE--EEE------EECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCC--cee------ecccCCCeEEEEccCccccccCCCCccccch
Confidence 46899999999999999999999887666543211110 000 0011113444443221
Q ss_pred ----CcEEEEccCCceEE--EEecCCCCCceeEEEcCCCCeEEEEecCCCCC------------eEEEecC--------C
Q psy14257 423 ----DQIEVAKLSGQFRR--TLIAGDMESPRAIALDPRFGLLFWTDWDSKAP------------RIERCSM--------S 476 (841)
Q Consensus 423 ----~~I~v~~~~G~~~~--~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~------------~I~r~~l--------d 476 (841)
..+.+++.+..... +.+. ..|.++++++..+++|+|..+++.. .|..++. +
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~ 245 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 245 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred hhcceEEEEEecCCceEEEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence 12334554433222 2222 3688999999999999998653211 1111111 1
Q ss_pred CCCc----EEEEEeccc-C-------CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--------CC-eeEEEEcCC
Q psy14257 477 GEHR----SVIVRVDLL-T-------SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--------GK-DHHVVLSNH 535 (841)
Q Consensus 477 G~~~----~~i~~~~~~-~-------~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--------G~-~~~~i~~~~ 535 (841)
|... ..+++..-. . ..-+.|.|+.++++++.+|++......+.++++. +. .+.+++...
T Consensus 246 Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~ 325 (459)
T d1fwxa2 246 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 325 (459)
T ss_dssp TCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred CCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence 1111 011110000 0 0125799999999999999999989999999984 21 122333333
Q ss_pred CCCCcceEEEEec-CeEEEEeCCCCeEEEEec
Q psy14257 536 DSLTHPFAIALFE-NHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 536 ~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~ 566 (841)
+.--.|.--++++ |+.|.|-.-...|.+.+.
T Consensus 326 elglgPLht~fd~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred ccCcCccccccCCCceEEEEeeccceEEEEec
Confidence 3234688888864 899999999999998874
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.39 Score=47.93 Aligned_cols=271 Identities=10% Similarity=0.005 Sum_probs=141.8
Q ss_pred CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC-cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH-RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 443 l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~-~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
......|+++|.+.+|+-.. .+.|..-++.... ...+.... ....-.....+++.+.+..|+.+. ..+.|...
T Consensus 51 ~~~V~~v~fs~~g~~latg~----dg~V~iWd~~~~~~~~~~~~~~-~~~h~~~I~~v~~s~dg~~l~s~~-~dg~i~iw 124 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG----KGCVKVWDISHPGNKSPVSQLD-CLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIW 124 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC----BSEEEEEETTSTTCCSCSEEEE-CSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEE----CCEEEEEEccCCcccceeEEee-ecCCCCcEEEEEEcCCCCEEEEee-cccccccc
Confidence 34568899999877776532 3456665664321 11111100 001223356889987666666554 46788888
Q ss_pred EcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCC
Q psy14257 522 TYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNG 600 (841)
Q Consensus 522 ~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng 600 (841)
++.....+..............+++. ++.+.++-...+.|...+..+++........
T Consensus 125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~---------------------- 182 (337)
T d1gxra_ 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH---------------------- 182 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC----------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------------
Confidence 88765433332211112223445553 3445555555566666665544322221100
Q ss_pred CCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEEEecCCCCccccceeecCCCCCceEEEEecC
Q psy14257 601 NCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAA 679 (841)
Q Consensus 601 ~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~ 679 (841)
.....|.+ +.+ ...+++.+ ....++..++..... +.. ......+.+++|++.
T Consensus 183 ----------~~~v~~l~-----~s~--------~~~~~~~~~~d~~v~i~d~~~~~~--~~~--~~~~~~i~~l~~~~~ 235 (337)
T d1gxra_ 183 ----------TDGASCID-----ISN--------DGTKLWTGGLDNTVRSWDLREGRQ--LQQ--HDFTSQIFSLGYCPT 235 (337)
T ss_dssp ----------SSCEEEEE-----ECT--------TSSEEEEEETTSEEEEEETTTTEE--EEE--EECSSCEEEEEECTT
T ss_pred ----------cccccccc-----ccc--------ccccccccccccccccccccccee--ecc--cccccceEEEEEccc
Confidence 00011111 001 11122222 234455555543211 111 112245678999999
Q ss_pred CCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCC
Q psy14257 680 NKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP 759 (841)
Q Consensus 680 ~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~ 759 (841)
++.++... ..+.|+..+++... ... ....-..+.+|++.+.++.|+-+ .
T Consensus 236 ~~~l~~~~-~d~~i~i~d~~~~~--------------------------~~~-~~~~~~~i~~v~~s~~g~~l~s~---s 284 (337)
T d1gxra_ 236 GEWLAVGM-ESSNVEVLHVNKPD--------------------------KYQ-LHLHESCVLSLKFAYCGKWFVST---G 284 (337)
T ss_dssp SSEEEEEE-TTSCEEEEETTSSC--------------------------EEE-ECCCSSCEEEEEECTTSSEEEEE---E
T ss_pred ccccceec-cccccccccccccc--------------------------ccc-ccccccccceEEECCCCCEEEEE---e
Confidence 88888766 57888888887655 111 22334567889998877666554 2
Q ss_pred CCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEE
Q psy14257 760 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWS 806 (841)
Q Consensus 760 ~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~ 806 (841)
..+.|.+.++........... -..+.+++++|...+|.-.
T Consensus 285 ~Dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~t~ 324 (337)
T d1gxra_ 285 KDNLLNAWRTPYGASIFQSKE-------SSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-------SSCEEEEEECTTSCEEEEE
T ss_pred CCCeEEEEECCCCCEEEEccC-------CCCEEEEEEeCCCCEEEEE
Confidence 457899999865543333333 3578889999876665543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.56 E-value=0.39 Score=46.64 Aligned_cols=278 Identities=14% Similarity=0.076 Sum_probs=133.4
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
.+.+|+|... ++ +.++-..++.|...++..+. ...++....-.....+++.+.+ ++ +.+ ..++.
T Consensus 14 ~V~~l~~s~d-g~--~l~s~s~Dg~v~vWd~~~~~--~~~~~~~~h~~~v~~v~~~~~g-~~--~~~--------~~d~~ 77 (299)
T d1nr0a2 14 AITALSSSAD-GK--TLFSADAEGHINSWDISTGI--SNRVFPDVHATMITGIKTTSKG-DL--FTV--------SWDDH 77 (299)
T ss_dssp CEEEEEECTT-SS--EEEEEETTSCEEEEETTTCC--EEECSSCSCSSCEEEEEECTTS-CE--EEE--------ETTTE
T ss_pred CcEEEEECCC-CC--EEEEEcCCCeEEEEECCCCc--EEEEEcCCCCCcEEEEEeeccc-ee--ecc--------cceee
Confidence 3567777664 33 44555566777777776543 1111111111223445555432 22 211 12456
Q ss_pred EEEEccCCCccccc---cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 330 IEKAGMHGENRSPL---VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 330 I~~~~~dG~~~~~l---~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
|..++..+...... .......+.++++.+.+..++..... .|...+. +...+....... .. +
T Consensus 78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~--~i~~~~~-~~~~~~~~~~~~----~~--------~ 142 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK--HIAIYSH-GKLTEVPISYNS----SC--------V 142 (299)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS--EEEEEET-TEEEEEECSSCE----EE--------E
T ss_pred EEEeccCCccccccccccccccccccccccccccccccccccc--ccccccc-cccccccccccc----cc--------c
Confidence 77777665543322 22234567788888777666655432 3333321 111111000000 00 0
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEE-EecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRT-LIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~-l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~ 485 (841)
++.. +++++.+-...+.|.+.++.+..... .....-.....|+++|...+|+.... .+.|...++..........
T Consensus 143 ~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~ 218 (299)
T d1nr0a2 143 ALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ---SRKVIPYSVANNFELAHTN 218 (299)
T ss_dssp EECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSCEEEEEGGGTTEESCCC
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccc
Confidence 1111 14445555566889999887654332 22223356789999998777776654 3566666654322211111
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC-eeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEE
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK-DHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~-~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~ 564 (841)
. ....-.....|++.+.+..|+... ..+.|...++... ....+.........-..++..++...++-...+.|...
T Consensus 219 ~--~~~h~~~v~~l~~s~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iW 295 (299)
T d1nr0a2 219 S--WTFHTAKVACVSWSPDNVRLATGS-LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295 (299)
T ss_dssp C--CCCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred c--ccccccccccccccccccceEEEc-CCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEE
Confidence 0 001223457889987666555444 4578888888753 33333332211111123333344444444444555443
Q ss_pred e
Q psy14257 565 N 565 (841)
Q Consensus 565 ~ 565 (841)
+
T Consensus 296 d 296 (299)
T d1nr0a2 296 N 296 (299)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.52 E-value=0.033 Score=54.38 Aligned_cols=228 Identities=10% Similarity=-0.037 Sum_probs=114.8
Q ss_pred CCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC-----CCeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 328 GGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH-----LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~-----~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
+.|++.+++|...+.|.. .-....+.++.+++++|+++... ...|+.++++|+..+.+.............
T Consensus 21 ~dl~~~d~~~g~~~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~--- 96 (281)
T d1k32a2 21 DDLWEHDLKSGSTRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMF--- 96 (281)
T ss_dssp TEEEEEETTTCCEEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEEC---
T ss_pred CcEEEEECCCCCEEEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccc---
Confidence 368888888887776643 22345677899999999887431 135889999988877653221100000000
Q ss_pred CCCCccccccceEEEEecCC-----CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCC--------Ce
Q psy14257 403 CRPEDNLWIGKNLYWVESNL-----DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKA--------PR 469 (841)
Q Consensus 403 ~~~~avdw~~~~LY~tD~~~-----~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~--------~~ 469 (841)
....+....++.||++.... ..+...+.++...+.... .....+...+....+|........ ..
T Consensus 97 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (281)
T d1k32a2 97 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GPATHILFADGRRVIGRNTFELPHWKGYRGGTRG 173 (281)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCC
T ss_pred ccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC---CccceeeecCCCeEEEeeccccceeeeeccCCcc
Confidence 00001222346677765432 234456666655443221 122233333333333333322100 11
Q ss_pred EEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe
Q psy14257 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF 547 (841)
Q Consensus 470 I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~ 547 (841)
.............+. .....-...... ...+++... ....|+.++++|...+.+.... ...+..++..
T Consensus 174 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~--~~~~~~~SpD 243 (281)
T d1k32a2 174 KIWIEVNSGAFKKIV------DMSTHVSSPVIV--GHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTD 243 (281)
T ss_dssp EEEEEEETTEEEEEE------CCSSCCEEEEEE--TTEEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEES
T ss_pred eeeeeccccceeecc------CCccccceeeee--ccccceecccccccceEEEeCCCCceEEeecCC--CcccccCcCC
Confidence 111111111111111 111222233333 345666543 3458999999999887664332 1234456777
Q ss_pred cCeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 548 ENHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 548 ~~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
+.+|+|+. .+.|+.++..+|+...+
T Consensus 244 G~~I~f~~--~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 244 GRRILFSK--GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SSCEEEEE--TTEEEEECTTTCCEEEC
T ss_pred CCEEEEEe--CCEEEEEECCCCCEEEe
Confidence 88888875 45788888766654433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.43 Score=45.67 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=61.8
Q ss_pred ceEEEEecCCC----cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLD----QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~----~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
+--|+++...+ .|++++.+|+..+.+.... ..-..-+..|++.+|.++........++...+++...+.+..
T Consensus 5 ~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (269)
T d2hqsa1 5 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--- 80 (269)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC---
T ss_pred eEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCC-CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee---
Confidence 44566665433 5889999999888776542 334567899999898777655446688888888887776654
Q ss_pred cCCCCCCceeEEEeccCCEEEEE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWI 511 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~ 511 (841)
...........+.+.+|+..
T Consensus 81 ---~~~~~~~~~~spdg~~i~~~ 100 (269)
T d2hqsa1 81 ---FPRHNGAPAFSPDGSKLAFA 100 (269)
T ss_dssp ---CSSCEEEEEECTTSSEEEEE
T ss_pred ---eecccccceecCCCCeeeEe
Confidence 33445556666665555543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.35 E-value=0.27 Score=47.34 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=45.4
Q ss_pred eEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEc
Q psy14257 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 457 ~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~ 533 (841)
.+++.........|+.++++|...+.+.. ..-..+. .+.+++++|+|.. .+.|+.+++++...+.|..
T Consensus 203 ~~~~~~~~~~~~~l~~~d~~g~~~~~lt~-----~~~~~~~--~~SpDG~~I~f~~--~~~l~~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 203 RIYFITDIDGFGQIYSTDLDGKDLRKHTS-----FTDYYPR--HLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEI 270 (281)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEECCC-----CCSSCEE--EEEESSSCEEEEE--TTEEEEECTTTCCEEECCC
T ss_pred ccceecccccccceEEEeCCCCceEEeec-----CCCcccc--cCcCCCCEEEEEe--CCEEEEEECCCCCEEEecc
Confidence 45554433346789999999998887654 2222222 3455678888865 3579999999887776643
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.002 Score=43.98 Aligned_cols=32 Identities=25% Similarity=0.751 Sum_probs=26.7
Q ss_pred ccccccC-CCCCccC--ceeecCCCCceEEeecCCee
Q psy14257 170 SYLHPCE-AWGTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 170 ~~~~eC~-~~~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
++++||. ...+|.+ .|.++ .++|+|.|++||.
T Consensus 1 qDideC~~~~~pC~n~g~C~n~--~g~y~C~C~~G~~ 35 (42)
T d2vj3a1 1 QDVDECSLGANPCEHAGKCINT--LGSFECQCLQGYT 35 (42)
T ss_dssp CCCCTTTSSSCSSSTTCEEEEC--SSSEEEECCTTEE
T ss_pred CCCccccCCCCCCCCCcEeECC--CCCEEeECCCCCc
Confidence 4688886 3567855 89999 9999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.88 E-value=0.81 Score=43.77 Aligned_cols=285 Identities=12% Similarity=0.029 Sum_probs=132.0
Q ss_pred ceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
+++.+|-...+.|.+.++. |+...++ .........+++++...++...... ..+............... .
T Consensus 29 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~ 99 (317)
T d1vyhc1 29 FSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFECIRTMH-----G 99 (317)
T ss_dssp SSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTTSSEEEEEETT---SCCCEEETTSSCEEECCC-----C
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeecccccccccccc---cccccccccccccccccc-----c
Confidence 3344444445666666654 3333333 2334456788898876666555433 233333332222221111 2
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCc
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.......+.+.+.+..|+... ..+.+...++........+... ......+++. ++.++.+-...+.|...+..+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~ 176 (317)
T d1vyhc1 100 HDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEVQTGYCVKTFTGH--REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ccccceeeeccCCCceEEeec-cCcceeEeecccceeeeEEccC--CCcceeeecccCCCEEEEEeCCCeEEEEeeccce
Confidence 233345566665555555443 4567777777644333333222 2234555653 34555554455666666655544
Q ss_pred ceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEE
Q psy14257 571 DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRG 649 (841)
Q Consensus 571 ~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~ 649 (841)
....+.........+...|.. ..+.+....+. ..........+++.+ ....|+.
T Consensus 177 ~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~d~~i~~ 231 (317)
T d1vyhc1 177 CKAELREHRHVVECISWAPES-----------SYSSISEATGS--------------ETKKSGKPGPFLLSGSRDKTIKM 231 (317)
T ss_dssp EEEEECCCSSCEEEEEECCSC-----------GGGGGGGCCSC--------------C-------CCEEEEEETTSEEEE
T ss_pred eeEEEecCCCCceEEEEeecc-----------ccceeeccccc--------------eeeeeccCCceeEeccCCCEEEE
Confidence 333332111110000000100 00000000000 000000112333333 3344555
Q ss_pred EecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceE
Q psy14257 650 VDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQI 729 (841)
Q Consensus 650 ~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (841)
.++..... +..+. .....+.++++.+..+.|+... ..+.|+..++.... .
T Consensus 232 ~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~--------------------------~ 281 (317)
T d1vyhc1 232 WDVSTGMC--LMTLV-GHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKR--------------------------C 281 (317)
T ss_dssp EETTTTEE--EEEEE-CCSSCEEEEEECSSSSCEEEEE-TTTEEEEECCTTSC--------------------------C
T ss_pred EECCCCcE--EEEEe-CCCCCEEEEEECCCCCEEEEEE-CCCeEEEEECCCCc--------------------------E
Confidence 55543211 11111 1123467889998887777665 57888888876544 1
Q ss_pred EEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEE
Q psy14257 730 QLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVC 767 (841)
Q Consensus 730 ~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~ 767 (841)
...+......+.+|++.+.++.|+-+. ..++|.+.
T Consensus 282 ~~~~~~h~~~V~~~~~s~~~~~l~s~s---~Dg~i~iW 316 (317)
T d1vyhc1 282 MKTLNAHEHFVTSLDFHKTAPYVVTGS---VDQTVKVW 316 (317)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEE---TTSEEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe---CCCeEEEe
Confidence 223344456788899988877776552 34667664
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0022 Score=42.80 Aligned_cols=33 Identities=21% Similarity=0.617 Sum_probs=25.7
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|+|. +.+|.+ .|++..++|+|.|++||. |..|+
T Consensus 2 d~C~--~~PC~n~g~C~~~~~~y~C~C~~G~~----G~~Ce 36 (39)
T d2vj3a2 2 NECV--SNPCQNDATCLDQIGEFQCICMPGYE----GVHCE 36 (39)
T ss_dssp CTTT--TCCCCSSCEEEECSSCEEEECCTTEE----SSSSC
T ss_pred cCCc--CCCCCCCCEEECCCCCEEEeCCCCCc----cCcCe
Confidence 4565 346764 899999999999999997 56664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.77 E-value=0.16 Score=50.90 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=92.5
Q ss_pred ceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCC-CeEEEEEcccCceeeeeeeeeeee
Q psy14257 636 SQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEY-NEVKRSSIVGGQIQLVVDAVFEFY 714 (841)
Q Consensus 636 ~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~-~~I~~~~~~g~~~~~~~~~~~~~~ 714 (841)
..+++++....|+..+++... ...+.....+.+++|.|..+.|+++.... ..|+..++.+..
T Consensus 15 G~~~a~~~~g~v~v~d~~~~~-----~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~------------ 77 (360)
T d1k32a3 15 GDLIAFVSRGQAFIQDVSGTY-----VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK------------ 77 (360)
T ss_dssp GGCEEEEETTEEEEECTTSSB-----EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC------------
T ss_pred CCEEEEEECCeEEEEECCCCc-----EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc------------
Confidence 345667777888888775432 22334456788999999999998875444 467777776655
Q ss_pred cccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEE
Q psy14257 715 LTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSI 794 (841)
Q Consensus 715 ~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~i 794 (841)
.+. +......+..+++.+.++.|.... ....+.+..+++.....+.... ......+
T Consensus 78 --------------~~~-~~~~~~~v~~~~~spdg~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 133 (360)
T d1k32a3 78 --------------AEK-FEENLGNVFAMGVDRNGKFAVVAN---DRFEIMTVDLETGKPTVIERSR------EAMITDF 133 (360)
T ss_dssp --------------EEE-CCCCCCSEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECS------SSCCCCE
T ss_pred --------------EEE-eeCCCceEEeeeecccccccceec---cccccccccccccceeeeeecc------cccccch
Confidence 222 334566788999999998888873 5678999999877655555420 3566788
Q ss_pred EEeCCCCeEEEEec
Q psy14257 795 AVWPVKGKMFWSNV 808 (841)
Q Consensus 795 avd~~~g~lyw~d~ 808 (841)
++.|...+|.++..
T Consensus 134 ~~spdg~~la~~~~ 147 (360)
T d1k32a3 134 TISDNSRFIAYGFP 147 (360)
T ss_dssp EECTTSCEEEEEEE
T ss_pred hhccceeeeeeecc
Confidence 99998888887653
|
| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0027 Score=39.96 Aligned_cols=32 Identities=31% Similarity=0.630 Sum_probs=25.7
Q ss_pred ccccccCCCCCC-CcccCCCCcEEecCCCceecC
Q psy14257 132 DEKQCLRSDCHH-DCYNTPEGFMCVCPRDMYLQP 164 (841)
Q Consensus 132 ~eC~~~~~~C~~-~C~~~~g~~~C~C~~Gy~l~~ 164 (841)
+||+.. .+|.+ +|.|..|+|.|.|..||...|
T Consensus 2 dECsig-npCGnGTCtNviGgFec~C~~GFepgp 34 (39)
T d1emoa2 2 DECSVG-NPCGNGTCKNVIGGFECTCEEGFEPGP 34 (39)
T ss_dssp CGGGTT-CSSSSSCEEECSSSEEECCSSSSCCCS
T ss_pred CccccC-CccCCceeeecccceEEeecCCcCCCc
Confidence 467654 47854 899999999999999998543
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.003 Score=42.12 Aligned_cols=33 Identities=21% Similarity=0.585 Sum_probs=26.0
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|+|. +.+|.+ .|.+..++|.|.|++||. |+.|+
T Consensus 1 D~C~--~~PC~ngg~C~~~~~~y~C~C~~G~~----G~~Ce 35 (39)
T d1xkba1 1 DQCE--TSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCE 35 (39)
T ss_dssp CTTT--TCCCCSSCEECCCSSSCCEECCTTEE----TTTTC
T ss_pred CcCC--CCCCCCCcEEECCCCCEEEECCCCCC----cCcCe
Confidence 4565 347864 899999999999999997 66665
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0022 Score=42.86 Aligned_cols=33 Identities=21% Similarity=0.602 Sum_probs=25.4
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|+|. +.+|.+ .|++..++|.|.|++||. |+.|+
T Consensus 4 d~C~--~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~Ce 38 (39)
T d1edmb_ 4 DQCE--SNPCLNGGSCKDDINSYECWCPFGFE----GKNCE 38 (39)
T ss_dssp CTTT--TCCCCTTCEEEEETTEEEEECCTTCC----STTSC
T ss_pred ccCC--CCCCCCCcEEEcCCCCEEEECCCCCC----CCCCC
Confidence 4555 346754 899999999999999996 56664
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.004 Score=40.42 Aligned_cols=33 Identities=33% Similarity=0.720 Sum_probs=25.1
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|+|. +.+|.+ .|++..++|.|.|++||. |+.|+
T Consensus 1 d~C~--~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~CE 35 (35)
T d2vj3a3 1 DECA--SSPCLHNGRCLDKINEFQCECPTGFT----GHLCQ 35 (35)
T ss_dssp CTTT--TCCSTTTCEEEECSSCEEEECCTTEE----SSSSC
T ss_pred CCCC--CCCCCCCcEEECCCCCeEEECCCCCC----CCCcC
Confidence 3555 346754 899999999999999997 55553
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.27 E-value=1.1 Score=45.25 Aligned_cols=186 Identities=20% Similarity=0.213 Sum_probs=103.2
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEcc-------CCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecC-----
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYN-------QDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGS----- 394 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~-------~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~----- 394 (841)
.|+.++++|+.+..+ +.++++.|.+=+. ...++.++.. ..+|..+.+++...... .......
T Consensus 51 Gl~vYdL~G~~l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~-~~~~~~~p~~~~ 126 (353)
T d1h6la_ 51 GLAVYSLEGKMLHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ-SITDPNRPIASA 126 (353)
T ss_dssp CCEEEETTCCEEEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE-ECSCSSSCEECS
T ss_pred CEEEEcCCCcEEEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc-cccccccccccc
Confidence 466677877765543 4567777766531 1235556654 34677777766543321 1110000
Q ss_pred -CCccccCCCCCCccccccceEEE-EecCCCcEEEEcc--C--CceEEEEec--CCCCCceeEEEcCCCCeEEEEecCCC
Q psy14257 395 -DSRVGIPNCRPEDNLWIGKNLYW-VESNLDQIEVAKL--S--GQFRRTLIA--GDMESPRAIALDPRFGLLFWTDWDSK 466 (841)
Q Consensus 395 -~~~~~i~~~~~~avdw~~~~LY~-tD~~~~~I~v~~~--~--G~~~~~l~~--~~l~~P~giavd~~~g~Ly~td~~~~ 466 (841)
...-|+.. -.+..++.+|. +-...+.++.+.+ + |.....++. ..-.++.|+++|..++.||+++-.
T Consensus 127 ~~~vYGlc~----y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~-- 200 (353)
T d1h6la_ 127 IDEVYGFSL----YHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEED-- 200 (353)
T ss_dssp SSSCCCEEE----EECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT--
T ss_pred cCcceEEEE----EecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCc--
Confidence 01111100 01223465553 3334566665544 2 322222221 123578999999999999999954
Q ss_pred CCeEEEecCC---CCCcEEEEEecccCCCCCCceeEEEecc---CCEEEEEeCCCCeEEEEEcCCC
Q psy14257 467 APRIERCSMS---GEHRSVIVRVDLLTSRGAWPNGLTLDYQ---LTRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 467 ~~~I~r~~ld---G~~~~~i~~~~~~~~~~~~P~glalD~~---~~~LYw~d~~~~~I~~~~~dG~ 526 (841)
..|++..++ +...+.+.... ...-...|.||||=.. ++.|.+++.+.++...++..+.
T Consensus 201 -~Giw~~~a~~~~~~~~~~i~~~~-g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 201 -EAIWKFSAEPDGGSNGTVIDRAD-GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp -TEEEEEESSTTSCSCCEEEEECS-SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred -cceEEEEeccCCCccceeeeccc-CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 578888875 33444444321 1112457999998432 4688888888888888877653
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.25 E-value=0.0031 Score=41.53 Aligned_cols=32 Identities=22% Similarity=0.644 Sum_probs=24.7
Q ss_pred ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCcc
Q psy14257 132 DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 132 ~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
|+|. ..+|.+ .|++..++|.|.|++||. |+.|
T Consensus 3 d~C~--~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~C 36 (37)
T d2c4fl1 3 DQCA--SSPCQNGGSCKDQLQSYICFCLPAFE----GRNC 36 (37)
T ss_dssp CGGG--GCCCCTTCEEEEETTEEEEECCTTEE----STTS
T ss_pred ccCC--CCCCCCCCEEECCCCCeEEECCCCCc----CCCC
Confidence 4565 346754 899999999999999997 5555
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=2.3 Score=41.78 Aligned_cols=257 Identities=12% Similarity=0.034 Sum_probs=136.2
Q ss_pred CCcEEEEccCCce----EEEEec-CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCc
Q psy14257 422 LDQIEVAKLSGQF----RRTLIA-GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWP 496 (841)
Q Consensus 422 ~~~I~v~~~~G~~----~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P 496 (841)
.+.|.+.++.... ...+.. ..-.....|++.|...+|+.... .+.|...++.....+...... ......
T Consensus 71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~---~~~~~v 144 (337)
T d1gxra_ 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLSIWDLAAPTPRIKAELT---SSAPAC 144 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEEEEECCCC--EEEEEEE---CSSSCE
T ss_pred CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec---ccccccccccccccccccccc---cccccc
Confidence 5778888875321 112111 22234578999998777766553 467777777655444333311 223344
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cC-eEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-EN-HVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~-~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
..+++.+.+..|+.+ ...+.|...++............ ......+++. .+ .++++ ...+.|...+..+++....
T Consensus 145 ~~~~~~~~~~~l~s~-~~d~~i~~~~~~~~~~~~~~~~~--~~~v~~l~~s~~~~~~~~~-~~d~~v~i~d~~~~~~~~~ 220 (337)
T d1gxra_ 145 YALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp EEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEE
T ss_pred ccccccccccccccc-ccccccccccccccccccccccc--ccccccccccccccccccc-cccccccccccccceeecc
Confidence 677787655555544 45678888888776555444332 2334566663 33 44444 3456666666655543332
Q ss_pred EecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEe-ecCCeEEEEecC
Q psy14257 575 IQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF-SRPREIRGVDLE 653 (841)
Q Consensus 575 i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~-~~~~~i~~~~l~ 653 (841)
+... +.. . ..+..|.+ .+|+. .....|+..++.
T Consensus 221 ~~~~---------------------~~i--~--------~l~~~~~~---------------~~l~~~~~d~~i~i~d~~ 254 (337)
T d1gxra_ 221 HDFT---------------------SQI--F--------SLGYCPTG---------------EWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EECS---------------------SCE--E--------EEEECTTS---------------SEEEEEETTSCEEEEETT
T ss_pred cccc---------------------cce--E--------EEEEcccc---------------cccceecccccccccccc
Confidence 2100 000 0 00111221 22322 233445555554
Q ss_pred CCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEe
Q psy14257 654 HPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVV 733 (841)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 733 (841)
...... .......+..|+|.+..+.|+-.. ..+.|+..++.... . ...
T Consensus 255 ~~~~~~----~~~~~~~i~~v~~s~~g~~l~s~s-~Dg~i~iwd~~~~~--------------------------~-~~~ 302 (337)
T d1gxra_ 255 KPDKYQ----LHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGA--------------------------S-IFQ 302 (337)
T ss_dssp SSCEEE----ECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC--------------------------E-EEE
T ss_pred cccccc----ccccccccceEEECCCCCEEEEEe-CCCeEEEEECCCCC--------------------------E-EEE
Confidence 332211 111224567899998877776554 56888888776543 1 111
Q ss_pred eCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec
Q psy14257 734 DAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL 769 (841)
Q Consensus 734 ~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l 769 (841)
......+..+++.+.++.|..+. ..++|.+.+|
T Consensus 303 ~~~~~~v~~~~~s~d~~~l~t~s---~D~~I~vWdl 335 (337)
T d1gxra_ 303 SKESSSVLSCDISVDDKYIVTGS---GDKKATVYEV 335 (337)
T ss_dssp EECSSCEEEEEECTTSCEEEEEE---TTSCEEEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEEE
Confidence 12345678899988777666552 4577888765
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.0075 Score=40.41 Aligned_cols=31 Identities=26% Similarity=0.769 Sum_probs=24.5
Q ss_pred CCCCCC--CcccCCCCcEEecCCCceecCCCCccccc
Q psy14257 138 RSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYL 172 (841)
Q Consensus 138 ~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~ 172 (841)
+.+|.+ .|++..++|+|.|++||. |..|+.+
T Consensus 6 ~~pC~ngg~C~~~~~~y~C~C~~g~~----G~~Ce~~ 38 (40)
T d1g1sa2 6 DMSCSKQGECLETIGNYTCSCYPGFY----GPECEYV 38 (40)
T ss_dssp TTGGGGSEEEEECSSSEEEEECTTEE----STTSCEE
T ss_pred CCcCCCCcEEECCCCCeEEeCCCCcc----CCCCCCC
Confidence 346653 799999999999999997 6677654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=2.5 Score=40.46 Aligned_cols=297 Identities=10% Similarity=0.038 Sum_probs=135.6
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC--cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH--RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~--~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
....+|+++|...+|..+... +.|..-+++... ....... ..-.....+++.+.++.+.++-...+.|...
T Consensus 12 d~I~~l~fsp~~~~L~s~s~D---g~v~iwd~~~~~~~~~~~~~~----~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITSWD---GSLTVYKFDIQAKNVDLLQSL----RYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETT---SEEEEEEEETTTTEEEEEEEE----ECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECC---CeEEEEEccCCCcceEEEEec----CCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 346899999987777666543 455554444322 2222221 1122346788876666666665556788888
Q ss_pred EcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCC
Q psy14257 522 TYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGN 601 (841)
Q Consensus 522 ~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~ 601 (841)
++........................++..+++-...+.+...+...+........... .+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~-----------~~~~~~---- 149 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-----------SNNTKV---- 149 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC-----------SSSSSS----
T ss_pred ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccc-----------cccccc----
Confidence 87766554444332111111222223444555544455555444333222211111000 000000
Q ss_pred CccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCC
Q psy14257 602 CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANK 681 (841)
Q Consensus 602 Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 681 (841)
.... +.+.. ....++..+....|+..++.....................+...+..+
T Consensus 150 ---------~~~~-------~~~~~-------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (342)
T d1yfqa_ 150 ---------KNKI-------FTMDT-------NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp ---------CCCE-------EEEEE-------CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred ---------eeee-------eeeec-------cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence 0000 00111 112233334455666666654433222122222223344455555555
Q ss_pred EEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCC
Q psy14257 682 KIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQ 761 (841)
Q Consensus 682 ~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~ 761 (841)
..+.+-...+.+....++.............+. ..+. .. -.......+.+|++++.++.|+-. ...
T Consensus 207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~----~~~~-~~------~~~~~~~~v~~l~~sp~~~~lasg---~~D 272 (342)
T d1yfqa_ 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR----CHRL-NL------KDTNLAYPVNSIEFSPRHKFLYTA---GSD 272 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE----CCCC-CT------TCCSSCCCEEEEEECTTTCCEEEE---ETT
T ss_pred CEEEeecCCCeEEEEEecCCcceeeccccceee----eeee-cc------CCCcccccceeEEecCCccEEEEE---CCC
Confidence 556655566777666655443100000000000 0000 00 001223345789999988766555 346
Q ss_pred CeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEE
Q psy14257 762 SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWS 806 (841)
Q Consensus 762 ~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~ 806 (841)
++|.+.+++...+..-+.. ......+++.|...+|..+
T Consensus 273 g~v~vWD~~~~~~l~~~~~-------~~~~~~~~~s~~~~~l~~a 310 (342)
T d1yfqa_ 273 GIISCWNLQTRKKIKNFAK-------FNEDSVVKIACSDNILCLA 310 (342)
T ss_dssp SCEEEEETTTTEEEEECCC-------CSSSEEEEEEECSSEEEEE
T ss_pred CEEEEEECCCCcEEEEecC-------CCCCEEEEEEeCCCEEEEE
Confidence 7899999986544322222 2344567777765555544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.19 E-value=3.8 Score=42.40 Aligned_cols=115 Identities=9% Similarity=0.050 Sum_probs=64.0
Q ss_pred CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC------CCeEEEEEcCCCee
Q psy14257 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK------SDSIHTVTYDGKDH 528 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~------~~~I~~~~~dG~~~ 528 (841)
+++++|.........|+.++.+|.....+.. +-....++ +...++.||++-.. ...|++++++|...
T Consensus 331 ~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~------g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~ 403 (470)
T d2bgra1 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITK------GTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTK 403 (470)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSCCEESCC------SSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTC
T ss_pred CCcEEEEeccCcCceeEEEeccCCceeeecc------CCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCc
Confidence 3455555433345689999999988776643 22223343 33457888886432 22599999999766
Q ss_pred EEEEcCCCCCCcc---eEEEEe-cCeEEE-Ee--CCCCeEEEEeccCCcceEEEec
Q psy14257 529 HVVLSNHDSLTHP---FAIALF-ENHVYW-TD--WRTNSVIRANKWNGSDVTLIQR 577 (841)
Q Consensus 529 ~~i~~~~~~l~~P---~gla~~-~~~lY~-td--~~~~~i~~~~~~~g~~~~~i~~ 577 (841)
..++... ...+. +.+++. ++..|+ +- .....+..++..+|+.+.+++.
T Consensus 404 ~~~lt~~-~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 404 VTCLSCE-LNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp EEESSTT-TSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred eeEeccc-ccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 6665432 11222 345553 343333 22 2222345556667777777653
|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.011 Score=41.17 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCCCC-CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 139 SDCHH-DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 139 ~~C~~-~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
.+|.+ .|.+..++|.|.|++||. |+.|+
T Consensus 14 ~PC~nG~C~~~~~~y~C~C~~G~~----G~~Ce 42 (48)
T d1autl1 14 LCCGHGTCIDGIGSFSCDCRSGWE----GRFCQ 42 (48)
T ss_dssp TTTTSEEECCCSSCCCEEECTTEE----STTSC
T ss_pred CCCCCCEEECCCCCCeEeCCCCCc----CCCcc
Confidence 35644 789999999999999997 66675
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.05 E-value=0.019 Score=38.29 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=22.7
Q ss_pred ceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 184 DCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 184 ~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
.|.|+ .|+|.|.|.+||.. +++.|.+
T Consensus 14 ~C~Nt--~Gsy~C~C~~Gy~G--dG~~C~~ 39 (40)
T d1gl4a2 14 ECRDY--ATGFCCRCVANYTG--NGRQCVA 39 (40)
T ss_dssp EEEEC--SSCEEEEECTTEEE--CSSSEEE
T ss_pred EeecC--CCCeEeECCCCCcC--CCCEeeC
Confidence 78999 99999999999984 5788865
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.81 E-value=3.1 Score=40.03 Aligned_cols=69 Identities=7% Similarity=-0.049 Sum_probs=46.5
Q ss_pred CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeec
Q psy14257 669 FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~ 748 (841)
..+..++|++..+.|+... ..+.|+..++.... ....+.+....+.+|++.+.
T Consensus 271 ~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~--------------------------~~~~~~~H~~~V~~l~~s~d 323 (340)
T d1tbga_ 271 CGITSVSFSKSGRLLLAGY-DDFNCNVWDALKAD--------------------------RAGVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp SCEEEEEECSSSCEEEEEE-TTSCEEEEETTTCC--------------------------EEEEECCCSSCEEEEEECTT
T ss_pred CceEEEEECCCCCEEEEEE-CCCEEEEEECCCCc--------------------------EEEEEcCCCCCEEEEEEeCC
Confidence 3467899998877776655 57889888876544 22334444567888999887
Q ss_pred CCcEEEEecCCCCCeEEEE
Q psy14257 749 AQNMFIAVSSPTQSKIVVC 767 (841)
Q Consensus 749 ~~~LYw~~~~~~~~~I~v~ 767 (841)
++.|+-.. ..++|.+.
T Consensus 324 ~~~l~s~s---~Dg~v~iW 339 (340)
T d1tbga_ 324 GMAVATGS---WDSFLKIW 339 (340)
T ss_dssp SSCEEEEE---TTSCEEEE
T ss_pred CCEEEEEc---cCCEEEEe
Confidence 77666552 34567664
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.52 E-value=0.71 Score=47.48 Aligned_cols=96 Identities=6% Similarity=-0.015 Sum_probs=62.8
Q ss_pred cceEEEEecCCCcEEEEccCCceEEEEec-CCCCCceeEEEcCCCCeEEEEecCCCCCeE--------------EE---e
Q psy14257 412 GKNLYWVESNLDQIEVAKLSGQFRRTLIA-GDMESPRAIALDPRFGLLFWTDWDSKAPRI--------------ER---C 473 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~G~~~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~~~~~I--------------~r---~ 473 (841)
++.||+.|..+.+|.|++++.-....++. .....|.|+.+.+.....|+...++ ..+ ++ .
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e--~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGE--DETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEEC--SCEESSCSSSSTTCGG-EEEEEE
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCc--cccccCCCCccccchhhcceEEE
Confidence 38899999999999999999866544443 3467889998866555666655331 111 11 1
Q ss_pred cCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 474 SMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 474 ~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
-+|....++..+.. .-..|.+++++++++.+|++..
T Consensus 177 ~ID~~tm~V~~QV~----V~g~ld~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 177 AVDADKWEVAWQVL----VSGNLDNCDADYEGKWAFSTSY 212 (459)
T ss_dssp EEETTTTEEEEEEE----ESSCCCCEEECSSSSEEEEEES
T ss_pred EEecCCceEEEEee----eCCChhccccCCCCCEEEEEec
Confidence 12444454444421 1235789999999999999863
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.0094 Score=39.65 Aligned_cols=29 Identities=21% Similarity=0.708 Sum_probs=23.3
Q ss_pred CCCCCC--CcccCCCCcEEecCCCceecCCCCccc
Q psy14257 138 RSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 138 ~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
+.+|.+ .|++..++|+|.|++||. |+.|+
T Consensus 6 ~~pC~ngg~C~~~~~~~~C~C~~g~~----G~~Ce 36 (39)
T d1g1ta2 6 NTSCSGHGECVETINNYTCKCDPGFS----GLKCE 36 (39)
T ss_dssp TTGGGGSEEEEEETTEEEEEECTTEE----STTSC
T ss_pred CCcCCCCcEEECCCCCEEEeCCCCCc----CcCcC
Confidence 346753 899999999999999997 56665
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.027 Score=37.37 Aligned_cols=30 Identities=37% Similarity=0.800 Sum_probs=23.6
Q ss_pred cccccCCCCCccC--ceeecCCCCceEEeecCCee
Q psy14257 171 YLHPCEAWGTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 171 ~~~eC~~~~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
++|+|. ..+|.+ .|.+. .++|+|.|++||.
T Consensus 2 d~d~C~-~~PC~ngg~C~~~--~~~y~C~C~~g~~ 33 (39)
T d1edmb_ 2 DGDQCE-SNPCLNGGSCKDD--INSYECWCPFGFE 33 (39)
T ss_dssp CCCTTT-TCCCCTTCEEEEE--TTEEEEECCTTCC
T ss_pred ccccCC-CCCCCCCcEEEcC--CCCEEEECCCCCC
Confidence 466774 456744 78888 9999999999996
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.038 Score=36.55 Aligned_cols=29 Identities=28% Similarity=0.847 Sum_probs=22.4
Q ss_pred ccccCCCCCccC--ceeecCCCCceEEeecCCee
Q psy14257 172 LHPCEAWGTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 172 ~~eC~~~~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
+|+|. ..+|.+ .|++. .++|+|.|++||.
T Consensus 1 Id~C~-~~PC~n~g~C~~~--~~~y~C~C~~G~~ 31 (39)
T d2vj3a2 1 VNECV-SNPCQNDATCLDQ--IGEFQCICMPGYE 31 (39)
T ss_dssp CCTTT-TCCCCSSCEEEEC--SSCEEEECCTTEE
T ss_pred CcCCc-CCCCCCCCEEECC--CCCEEEeCCCCCc
Confidence 45663 346644 78888 9999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.05 E-value=4.1 Score=39.09 Aligned_cols=141 Identities=8% Similarity=-0.042 Sum_probs=78.6
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+.++++-...+.|.+.++........+.........|+++|...+|+.... .+.|...++........... ...
T Consensus 196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~---d~~i~~~~~~~~~~~~~~~~---~~~ 269 (340)
T d1tbga_ 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDLRADQELMTYSH---DNI 269 (340)
T ss_dssp SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECC---TTC
T ss_pred cceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeeccccccccccc---ccc
Confidence 556666666778888887654433333334456789999997666555442 46677777664443333221 012
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEE
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVI 562 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~ 562 (841)
......+++++.+..|+ +-...+.|...++........+..+ -....+|++. ++.+++|-...+.|+
T Consensus 270 ~~~i~~~~~s~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~H--~~~V~~l~~s~d~~~l~s~s~Dg~v~ 337 (340)
T d1tbga_ 270 ICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp CSCEEEEEECSSSCEEE-EEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred cCceEEEEECCCCCEEE-EEECCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEccCCEEE
Confidence 23356788887655555 4444678999887654443333332 1233567764 344444433344443
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.96 E-value=0.026 Score=36.91 Aligned_cols=30 Identities=27% Similarity=0.676 Sum_probs=22.2
Q ss_pred cccccCCCCCccC--ceeecCCCCceEEeecCCee
Q psy14257 171 YLHPCEAWGTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 171 ~~~eC~~~~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
|+|+|. ..+|.+ .|.+. .++|.|.|++||.
T Consensus 1 D~d~C~-~~PC~ngg~C~~~--~~~y~C~C~~g~~ 32 (37)
T d2c4fl1 1 DGDQCA-SSPCQNGGSCKDQ--LQSYICFCLPAFE 32 (37)
T ss_dssp TCCGGG-GCCCCTTCEEEEE--TTEEEEECCTTEE
T ss_pred CcccCC-CCCCCCCCEEECC--CCCeEEECCCCCc
Confidence 355663 345643 78888 9999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.54 E-value=5.6 Score=39.44 Aligned_cols=119 Identities=7% Similarity=-0.084 Sum_probs=66.2
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
+..++|... +. +..+-..++.|...++.++.. .....+...-.....|++.+.+ -|++-. ..++.|
T Consensus 10 It~~~~s~d-g~--~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~--~~l~s~--------s~D~~i 75 (371)
T d1k8kc_ 10 ISCHAWNKD-RT--QIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDS--NRIVTC--------GTDRNA 75 (371)
T ss_dssp CCEEEECTT-SS--EEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTT--TEEEEE--------ETTSCE
T ss_pred eEEEEECCC-CC--EEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCC--CEEEEE--------ECCCeE
Confidence 446666654 33 344445567777777765532 1122233333345677777644 233211 235678
Q ss_pred EEEccCCCccccc-cc-cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccE
Q psy14257 331 EKAGMHGENRSPL-VT-KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384 (841)
Q Consensus 331 ~~~~~dG~~~~~l-~~-~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~ 384 (841)
..++++....... .. ..-.....+++++.++.|+... ..+.|...+++.....
T Consensus 76 ~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~ 130 (371)
T d1k8kc_ 76 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDW 130 (371)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTE
T ss_pred EEEeecccccccccccccccccccccccccccccceeec-ccCcceeeeeeccccc
Confidence 8888765443322 22 2334567889998887777665 4566777776655443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.18 E-value=5 Score=38.01 Aligned_cols=137 Identities=13% Similarity=0.065 Sum_probs=67.4
Q ss_pred EEEecCCCcEEEEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc---EEEEEecccCC
Q psy14257 416 YWVESNLDQIEVAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR---SVIVRVDLLTS 491 (841)
Q Consensus 416 Y~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~---~~i~~~~~~~~ 491 (841)
.++-...+.|.+.+++. +..+++..........+++.|. |.++.+.. ...|...++.++.. ..+.. .
T Consensus 27 l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~~---d~~v~~~~~~~~~~~~~~~~~~-----~ 97 (299)
T d1nr0a2 27 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVSW---DDHLKVVPAGGSGVDSSKAVAN-----K 97 (299)
T ss_dssp EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEEEET---TTEEEEECSSSSSSCTTSCCEE-----E
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ceeecccc---eeeEEEeccCCccccccccccc-----c
Confidence 33433445666666653 3333322222344578899876 56665554 35666666654321 11112 2
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCC
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g 569 (841)
.-..+..+++.+.+..+..... +.|...+.. . ...+.. ...+..+++. ++.++.+-...+.|...+..++
T Consensus 98 ~~~~~~~~~~s~~g~~~~~~~~--~~i~~~~~~-~-~~~~~~----~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~ 168 (299)
T d1nr0a2 98 LSSQPLGLAVSADGDIAVAACY--KHIAIYSHG-K-LTEVPI----SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 168 (299)
T ss_dssp CSSCEEEEEECTTSSCEEEEES--SEEEEEETT-E-EEEEEC----SSCEEEEEECTTSCEEEEEETTSEEEEEEEETT
T ss_pred cccccccccccccccccccccc--ccccccccc-c-cccccc----ccccccccccccccccccccccccccccccccc
Confidence 3346778888866555554443 455555422 1 222221 1234456653 3344444344566665554433
|
| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.053 Score=33.99 Aligned_cols=31 Identities=26% Similarity=0.777 Sum_probs=24.1
Q ss_pred cccCCCCCcc-CceeecCCCCceEEeecCCeeec
Q psy14257 173 HPCEAWGTCS-QDCEPSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 173 ~eC~~~~~Cs-~~C~~~~~~g~~~C~C~~G~~l~ 205 (841)
+||.-..+|- ..|.|. .|+|.|.|.+||...
T Consensus 2 dECsignpCGnGTCtNv--iGgFec~C~~GFepg 33 (39)
T d1emoa2 2 DECSVGNPCGNGTCKNV--IGGFECTCEEGFEPG 33 (39)
T ss_dssp CGGGTTCSSSSSCEEEC--SSSEEECCSSSSCCC
T ss_pred CccccCCccCCceeeec--ccceEEeecCCcCCC
Confidence 4666555664 378898 999999999999754
|
| >d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.056 Score=35.04 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=29.6
Q ss_pred cCCCCCCCCCCccccccCCCCceeeeCCCCceeecC
Q psy14257 592 KSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSD 627 (841)
Q Consensus 592 ~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d 627 (841)
..||.. ..|.+-|.+...+.|+|.|..||.-.+|
T Consensus 4 vDPCf~--~~CE~qCqP~~~~~Y~CiCaeGFaP~p~ 37 (43)
T d1dx5i1 4 VDPCFR--ANCEYQCQPLDQTSYLCVCAEGFAPIPH 37 (43)
T ss_dssp CCGGGG--CCCSSEEEECSSSCEEEECCTTEEEETT
T ss_pred cccccC--CCcceeeeeCCCCcceEEeccccccCCC
Confidence 468888 4599999999988999999999987765
|
| >d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.13 Score=33.36 Aligned_cols=35 Identities=31% Similarity=0.870 Sum_probs=26.6
Q ss_pred cccccCCCCCccCceeecCCCCceEEeecCCeeecCC
Q psy14257 171 YLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPD 207 (841)
Q Consensus 171 ~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d 207 (841)
.+|+| ....|.++|... ..++|+|.|.+||....+
T Consensus 3 ~vDPC-f~~~CE~qCqP~-~~~~Y~CiCaeGFaP~p~ 37 (43)
T d1dx5i1 3 PVDPC-FRANCEYQCQPL-DQTSYLCVCAEGFAPIPH 37 (43)
T ss_dssp CCCGG-GGCCCSSEEEEC-SSSCEEEECCTTEEEETT
T ss_pred ccccc-cCCCcceeeeeC-CCCcceEEeccccccCCC
Confidence 35677 446799999875 356899999999987654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.12 E-value=10 Score=36.53 Aligned_cols=127 Identities=8% Similarity=-0.018 Sum_probs=69.2
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
.....++++|.+.+++.+-.. .+.|...++... +.................+++.+..+.++.+-...+.|...++
T Consensus 160 ~~v~~~~~~~~~~~~~~~~~~--d~~v~~~d~~~~--~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~ 235 (325)
T d1pgua1 160 QRINACHLKQSRPMRSMTVGD--DGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235 (325)
T ss_dssp SCEEEEEECSSSSCEEEEEET--TTEEEEEETTTB--EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred cccccccccccccceEEEeec--cccccccccccc--ccceecccccCCCCccEEeeeccccceeccccccccceeeeee
Confidence 445778898887776665543 455655554321 2211111111223345778888777777777666788888887
Q ss_pred CCCe-eEEEEcCCCCCC-cceEEEEecCeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 524 DGKD-HHVVLSNHDSLT-HPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 524 dG~~-~~~i~~~~~~l~-~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
.-.. ..++........ .-+.++..++..+++-...+.|...+..+++.+..
T Consensus 236 ~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~ 288 (325)
T d1pgua1 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288 (325)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 5433 333322111111 12444444555556655667777777666654443
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.64 E-value=0.18 Score=32.23 Aligned_cols=23 Identities=26% Similarity=0.879 Sum_probs=18.3
Q ss_pred CCccC--ceeecCCCCceEEeecCCee
Q psy14257 179 GTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 179 ~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
.+|.+ .|++. .++|+|.|++||.
T Consensus 6 ~PC~ngg~C~~~--~~~y~C~C~~g~~ 30 (35)
T d2vj3a3 6 SPCLHNGRCLDK--INEFQCECPTGFT 30 (35)
T ss_dssp CCSTTTCEEEEC--SSCEEEECCTTEE
T ss_pred CCCCCCcEEECC--CCCeEEECCCCCC
Confidence 34533 67888 8899999999997
|
| >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Heregulin-alpha, EGF-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.33 E-value=0.081 Score=39.19 Aligned_cols=36 Identities=25% Similarity=0.711 Sum_probs=25.0
Q ss_pred cccccccCCCCCC--Cc-----ccCCCCcEEecCCCceecCCCCccccc
Q psy14257 131 CDEKQCLRSDCHH--DC-----YNTPEGFMCVCPRDMYLQPDLITCSYL 172 (841)
Q Consensus 131 C~eC~~~~~~C~~--~C-----~~~~g~~~C~C~~Gy~l~~d~~~C~~~ 172 (841)
|++|.. ..|.+ .| .+..++|.|.|++||. |+.|+..
T Consensus 6 c~ec~~--~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~----G~~Ce~~ 48 (63)
T d1haea_ 6 CAEKEK--TFCVNGGECFMVKDLSNPSRYLCKCQPGFT----GARCTEN 48 (63)
T ss_dssp CCHHHH--TTSCTTCEEEEEESSSSSCCEEEECCTTEE----STTSCEE
T ss_pred CCCCcC--CcCCCCCEEeecccccCCCCEEeECCCCCC----CCCcCCC
Confidence 556552 35543 56 4667899999999997 6777643
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.13 Score=33.84 Aligned_cols=23 Identities=35% Similarity=1.016 Sum_probs=17.9
Q ss_pred CCccC--ceeecCCCCceEEeecCCee
Q psy14257 179 GTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 179 ~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
.+|.+ .|.+. .++|.|.|++||.
T Consensus 6 ~PC~ngg~C~~~--~~~y~C~C~~G~~ 30 (39)
T d1xkba1 6 SPCQNQGKCKDG--LGEYTCTCLEGFE 30 (39)
T ss_dssp CCCCSSCEECCC--SSSCCEECCTTEE
T ss_pred CCCCCCcEEECC--CCCEEEECCCCCC
Confidence 34533 67777 8899999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.94 E-value=13 Score=36.38 Aligned_cols=158 Identities=12% Similarity=0.048 Sum_probs=85.1
Q ss_pred ceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccc-cceEEEEecCCCcEEEEcc
Q psy14257 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI-GKNLYWVESNLDQIEVAKL 430 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~-~~~LY~tD~~~~~I~v~~~ 430 (841)
..+++++++..|..+ ...+.|...++++...+.+..+.. ....+ .+++|. ++++..+-...+.|.+.++
T Consensus 11 t~~~~s~dg~~la~~-~~~~~i~iw~~~~~~~~~~~~l~g--H~~~V-------~~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAIC-PNNHEVHIYEKSGNKWVQVHELKE--HNGQV-------TGVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp CEEEECTTSSEEEEE-CSSSEEEEEEEETTEEEEEEEEEC--CSSCE-------EEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred EEEEECCCCCEEEEE-eCCCEEEEEECCCCCEEEEEEecC--CCCCE-------EEEEECCCCCEEEEEECCCeEEEEee
Confidence 578888776666554 556788888888765444433221 11100 122232 2444455555678999888
Q ss_pred CCce-EEEEe-cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEE
Q psy14257 431 SGQF-RRTLI-AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRI 508 (841)
Q Consensus 431 ~G~~-~~~l~-~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~L 508 (841)
+... ..++. .........++++|...+|+..... ..|....++............ ...-.....+++++.+..|
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d---~~i~i~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~l 156 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLL 156 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT---SSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEE
T ss_pred cccccccccccccccccccccccccccccceeeccc---Ccceeeeeecccccccccccc-cccccccccccccccccce
Confidence 7543 33332 2233557899999987777666533 444444444333322222100 0112345678888765555
Q ss_pred EEEeCCCCeEEEEEcC
Q psy14257 509 YWIDAKSDSIHTVTYD 524 (841)
Q Consensus 509 Yw~d~~~~~I~~~~~d 524 (841)
. +-...+.|...+..
T Consensus 157 ~-s~s~D~~v~v~~~~ 171 (371)
T d1k8kc_ 157 A-AGSCDFKCRIFSAY 171 (371)
T ss_dssp E-EEETTSCEEEEECC
T ss_pred e-ccccCcEEEEEeec
Confidence 4 43445667766654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.11 E-value=15 Score=35.87 Aligned_cols=117 Identities=10% Similarity=-0.033 Sum_probs=63.3
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
.+.|++.|...+|+.... .+.|...+........... ........+++.+....++.+.. .+.|...+...
T Consensus 124 V~~l~~s~~~~~l~s~~~---dg~v~i~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~-~~~i~~~d~~~ 194 (388)
T d1erja_ 124 IRSVCFSPDGKFLATGAE---DRLIRIWDIENRKIVMILQ-----GHEQDIYSLDYFPSGDKLVSGSG-DRTVRIWDLRT 194 (388)
T ss_dssp EEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTT
T ss_pred EEEEEECCCCCcceeccc---ccccccccccccccccccc-----ccccccccccccccccccccccc-ceeeeeeeccc
Confidence 467899987666655443 3556555554332222221 22334567777766666665553 56788888776
Q ss_pred CeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 526 KDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 526 ~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
.......... .....+.++ ++.++++-...+.|...+..++.....
T Consensus 195 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 242 (388)
T d1erja_ 195 GQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242 (388)
T ss_dssp TEEEEEEECS---SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccccccccc---cccccccccCCCCCeEEEEcCCCeEEEeecccCcccee
Confidence 6554443332 223344442 345555544556666666555554433
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=19 Score=37.08 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=46.5
Q ss_pred EEEecCCCEEEEEECC----CCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCC---CCCcceeEEe
Q psy14257 674 LNFDAANKKIYWTDQE----YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAG---ISHPSGLAID 746 (841)
Q Consensus 674 v~~d~~~~~iyw~d~~----~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~p~glAvD 746 (841)
+.+|..++.||++-.+ ...+++++++|+. ....+... ...-...+++
T Consensus 365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~--------------------------~~~~lt~~~~~~~~~~~~~~S 418 (465)
T d1xfda1 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF--------------------------NRQCLSCDLVENCTYFSASFS 418 (465)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSSTTC--------------------------CCBCSSTTSSSSCCCCEEEEC
T ss_pred EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC--------------------------cceeeccccCCCCCEEEEEEC
Confidence 5799999999998643 3459999999876 11111111 1123466777
Q ss_pred ecCCcEEEEecCCCCCeEEEEecC-CcceEEE
Q psy14257 747 WIAQNMFIAVSSPTQSKIVVCNLE-GEYQTTI 777 (841)
Q Consensus 747 ~~~~~LYw~~~~~~~~~I~v~~l~-g~~~~~~ 777 (841)
+.++.+..+-+....+.+.+.+.. |+...+|
T Consensus 419 ~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~L 450 (465)
T d1xfda1 419 HSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (465)
T ss_dssp TTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeecCCCCeEEEEECCCCCEEEEE
Confidence 777666555444555566666543 4444344
|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Plasminogen activator (tissue-type), t-PA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.12 E-value=0.19 Score=33.51 Aligned_cols=28 Identities=25% Similarity=0.769 Sum_probs=20.2
Q ss_pred CCCCC--CcccC--CCCcEEecCCCceecCCCCccc
Q psy14257 139 SDCHH--DCYNT--PEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 139 ~~C~~--~C~~~--~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
.+|.+ .|++. .++|.|.|++||. |..|+
T Consensus 4 nPC~ngG~C~~~~~~~~y~C~C~~g~~----G~~Ce 35 (41)
T d1tpga1 4 PRCFNGGTCQQALYFSDFVCQCPEGFA----GKSCE 35 (41)
T ss_dssp CCSCTTCEEEEESSSSCEEEECCTTCB----SSSCC
T ss_pred CCCCCCCEEecCCCCCCeEECCCCCCC----CCCcC
Confidence 35643 67764 4679999999996 66775
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.01 E-value=15 Score=33.99 Aligned_cols=65 Identities=6% Similarity=-0.044 Sum_probs=31.5
Q ss_pred EEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 509 YWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 509 Yw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
+.+-...+.|...++........+..+ -....++++. ++.+.++-...+.|...+..+++.+..+
T Consensus 220 ~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 285 (317)
T d1vyhc1 220 LLSGSRDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285 (317)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred eEeccCCCEEEEEECCCCcEEEEEeCC--CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 333334456666666543322222221 1223556663 3444444445567777776666554443
|
| >d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.94 E-value=0.18 Score=33.57 Aligned_cols=28 Identities=25% Similarity=0.821 Sum_probs=20.2
Q ss_pred CCCCC--CcccC-CCCcEEecC-CCceecCCCCccc
Q psy14257 139 SDCHH--DCYNT-PEGFMCVCP-RDMYLQPDLITCS 170 (841)
Q Consensus 139 ~~C~~--~C~~~-~g~~~C~C~-~Gy~l~~d~~~C~ 170 (841)
.+|.+ .|++. .++|+|.|+ +||. |+.|+
T Consensus 7 ~PC~ngG~C~~~~~~~y~C~C~~~gy~----G~~Ce 38 (41)
T d1cvua2 7 NPCQNRGECMSTGFDQYKCDCTRTGFY----GENCT 38 (41)
T ss_dssp CCCCTTCEEEEEETTEEEEECTTSSEE----TTTTC
T ss_pred CCCCCCCEEEECCCCCEEEeCcCCCcC----CcCcC
Confidence 46754 78775 578999996 6996 66665
|
| >d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Sheep (Ovis aries) [TaxId: 9940]
Probab=84.75 E-value=0.17 Score=33.83 Aligned_cols=28 Identities=25% Similarity=0.639 Sum_probs=20.4
Q ss_pred CCCCC--CcccC-CCCcEEecCC-CceecCCCCccc
Q psy14257 139 SDCHH--DCYNT-PEGFMCVCPR-DMYLQPDLITCS 170 (841)
Q Consensus 139 ~~C~~--~C~~~-~g~~~C~C~~-Gy~l~~d~~~C~ 170 (841)
.+|.+ .|++. .++|.|.|+. ||. |..|+
T Consensus 8 nPC~ngG~C~~~~~~~y~C~C~~~G~~----G~~Ce 39 (42)
T d1q4ga2 8 YPCQHQGICVRFGLDRYQCDCTRTGYS----GPNCT 39 (42)
T ss_dssp CCCCTTCEEEEETTTEEEEECTTSSEE----TTTTC
T ss_pred CCCCCCCEeeeCCCCCEEEECCCCCcC----CcCcC
Confidence 36754 78764 5789999986 896 66665
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.66 E-value=20 Score=34.34 Aligned_cols=212 Identities=9% Similarity=-0.073 Sum_probs=104.3
Q ss_pred CCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc--c-cceEEEEecCCCcE
Q psy14257 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW--I-GKNLYWVESNLDQI 425 (841)
Q Consensus 349 ~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw--~-~~~LY~tD~~~~~I 425 (841)
..|..|++++.+++|-++......|+..+........+... .+... ....++.| . ++.+..+-...+.|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~--~gh~~------~~v~~v~fsP~~~g~~lasgs~Dg~i 89 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF--TGHGS------SVVTTVKFSPIKGSQYLCSGDESGKV 89 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE--CTTTT------SCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE--eCCCC------CCEEEEEEeeCCCCCEEEEEeCCCCE
Confidence 35678899998888877765443343333211111111000 00000 00001222 1 24555565566777
Q ss_pred EEEccCCc----eEE----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCce
Q psy14257 426 EVAKLSGQ----FRR----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPN 497 (841)
Q Consensus 426 ~v~~~~G~----~~~----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~ 497 (841)
.+.++... ... .........-..|++++...+|..+..+. ...+.....+-......+. ..-..-+
T Consensus 90 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~h~~~v~ 163 (325)
T d1pgua1 90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR-DNFGVFISWDSGNSLGEVS-----GHSQRIN 163 (325)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS-SCSEEEEETTTCCEEEECC-----SCSSCEE
T ss_pred EEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccc-cceEEEEeecccccceeee-----ecccccc
Confidence 77655321 111 01111222346889988766766665442 3445555554222111111 1223447
Q ss_pred eEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEE-EEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 498 GLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV-VLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 498 glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~-i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
.+++.+.+..++.+-...+.|...+........ +............+++. .+.++++-...+.|...+..+++....
T Consensus 164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~ 243 (325)
T d1pgua1 164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243 (325)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc
Confidence 788887777666666566778877765433322 22211112224566663 356777666677787777666654443
|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.54 E-value=0.32 Score=33.46 Aligned_cols=33 Identities=33% Similarity=0.874 Sum_probs=23.2
Q ss_pred cccCCCCCccC-ceeecCCCCceEEeecCCeeecCCCCceE
Q psy14257 173 HPCEAWGTCSQ-DCEPSVSNNSYKCTCHAGYELEPDMFTCK 212 (841)
Q Consensus 173 ~eC~~~~~Cs~-~C~~~~~~g~~~C~C~~G~~l~~d~~~C~ 212 (841)
++|. ..+|.+ .|.+. .++|.|.|++||. +..|.
T Consensus 9 ~~C~-~~PC~nG~C~~~--~~~y~C~C~~G~~----G~~Ce 42 (48)
T d1autl1 9 HPCA-SLCCGHGTCIDG--IGSFSCDCRSGWE----GRFCQ 42 (48)
T ss_dssp CSSS-STTTTSEEECCC--SSCCCEEECTTEE----STTSC
T ss_pred Cccc-CCCCCCCEEECC--CCCCeEeCCCCCc----CCCcc
Confidence 4553 245543 67777 8999999999997 45664
|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.34 E-value=0.4 Score=33.80 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=20.2
Q ss_pred CCCCC--Cccc--CCCCcEEecCCCceecCCCCcccc
Q psy14257 139 SDCHH--DCYN--TPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 139 ~~C~~--~C~~--~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
+.|.+ +|.. ...+|+|.|++||. |..|+.
T Consensus 12 ~~C~NgG~C~~~~~~~~~~C~C~~gy~----G~~Ce~ 44 (53)
T d3egfa_ 12 GYCLNGGVCMHIESLDSYTCNCVIGYS----GDRCQT 44 (53)
T ss_dssp CCSCSSCEEEEESSSSCEEEECCTTCC----SSSSCC
T ss_pred CCCCCCcEeeccCCCCCeEeECCCCCc----CCCCcc
Confidence 35543 6753 44689999999996 667764
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.17 E-value=0.41 Score=31.36 Aligned_cols=23 Identities=35% Similarity=1.041 Sum_probs=18.6
Q ss_pred CCccC--ceeecCCCCceEEeecCCee
Q psy14257 179 GTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 179 ~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
.+|.+ .|.+. .++|.|.|++||.
T Consensus 7 ~pC~ngg~C~~~--~~~~~C~C~~g~~ 31 (39)
T d1g1ta2 7 TSCSGHGECVET--INNYTCKCDPGFS 31 (39)
T ss_dssp TGGGGSEEEEEE--TTEEEEEECTTEE
T ss_pred CcCCCCcEEECC--CCCEEEeCCCCCc
Confidence 45543 67888 8999999999997
|
| >d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.96 E-value=0.2 Score=34.58 Aligned_cols=29 Identities=24% Similarity=0.608 Sum_probs=19.9
Q ss_pred CCCCC--Cccc--CCCCcEEecCCCceecCCCCcccc
Q psy14257 139 SDCHH--DCYN--TPEGFMCVCPRDMYLQPDLITCSY 171 (841)
Q Consensus 139 ~~C~~--~C~~--~~g~~~C~C~~Gy~l~~d~~~C~~ 171 (841)
+.|.+ .|.. ...+|+|.|+.||. |..|+-
T Consensus 10 ~~C~ngG~C~~~~~~~~~~C~C~~gy~----G~~Ce~ 42 (48)
T d1nqlb_ 10 GYCLHDGVCMYIEALDKYACNCVVGYI----GERCQY 42 (48)
T ss_dssp CEECTTCEEEEETTTTEEEEEECTTEE----STTSCE
T ss_pred CCCCCCcEEeeeCCCCCeEEeCCCCcc----cCCCCc
Confidence 34543 6754 34679999999997 666753
|