Psyllid ID: psy14258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MTFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEccccEEEcccccEEEccccEEEcccccccccccccEEEEEcccEEEEEEccccEEEEEEEcccEEEEEEEccccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEEEEccccccEEEEEEccccEEEEEEccccccccEEEEEccccEEEEEEcccccccEEEEEccccccEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEccccccccEEEEEEccEEEEEEcccccEEEEEccccccEEEEccccccEEEEEEEccccccccccccccccccccccEEcccccccccccEEEEEccccccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEEccccEEEEcccccEEEEEEcccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccccccccccEEccccccEEcccccEEEcccccccccccccccccccEEEEccccccEEEEEEccccEEEEEEcccccEEEEEEccccccccEEEEEccccEEEEcccccccEEEEEEcccccEEEEEEEcccccccEEEEEcccccEEEEEEcccccccEEEEcccccEEEEEEcccccccEEEEcccccccEEEEEcccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEccEEEEEcccccEEEEEEccccccEEEEEEccccccEEEEcccccccccccccEEEEccccccccccEEEcccccccEEEEEcccccccEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEccccccccEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEc
Coil and Loop (DISEMBL)
mtfrgpnktqcvdadeclidgscdqtctnthlsytytdegfsfqgVKTHLYETIEAFWeecfgpmdieewDEGLSFLTFAQEAIYFCTHYMEHCMIAIDlnlskprgialdptsgymfftkwgatrpmlerslldgterfpmvthkivypeAIYFCTHYMEHCMIAIDlnlskprgialdptsgymfftkwgatrpmlerslldgterfpmvthkivypygvtvdfptkhvyWVDTYLDFIDRinydgtdrktirkgfpvqnlydiTVFENNLFVTSWRNQSIIrvnkfnsddyetianfsrpfAIHIYhrqkqpdalkpstfllyakgkpaiikgltfkrdgtteqaimpitdlkrpsvidyhekeEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANnlywtdagigtinvakisdFSIRKVLYKG
Flexible Loop (DISEMBL)
mtfrgpnktqcvdaDECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPaiikgltfkrdgtteqaimpitdlkrpsvidyheKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTInvakisdfsirkvlykg
Low Complexity Region (SEG)
MTFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG
Disordered region (IsUnstruct)
**********CVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY**
Disordered Region (DISOPRED)
MTFR**NKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG
Disordered Region (DISEMBL)
*********QCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG
Disordered Region (DISPRO)
*TFR*PNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q07954	4544	Prolow-density lipoprotei	yes	N/A	0.654	0.063	0.369	3e-62
Q91ZX7	4545	Prolow-density lipoprotei	yes	N/A	0.654	0.063	0.369	3e-62
P98157	4543	Low-density lipoprotein r	yes	N/A	0.654	0.063	0.367	5e-61
Q9NZR2	4599	Low-density lipoprotein r	no	N/A	0.654	0.062	0.329	2e-51
Q9JI18	4599	Low-density lipoprotein r	no	N/A	0.654	0.062	0.344	2e-51
A2ARV4	4660	Low-density lipoprotein r	no	N/A	0.940	0.088	0.285	2e-49
P98158	4660	Low-density lipoprotein r	no	N/A	0.9	0.084	0.265	9e-49
Q8VI56	1905	Low-density lipoprotein r	no	N/A	0.895	0.206	0.277	2e-45
O75096	1905	Low-density lipoprotein r	no	N/A	0.895	0.206	0.275	2e-44
Q9QYP1	1905	Low-density lipoprotein r	no	N/A	0.895	0.206	0.273	2e-44

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score =  239 bits (611), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 128/346 (36%), Positives = 193/346 (55%), Gaps = 58/346 (16%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct: 302 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct: 361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query: 271 NNLFVTSWRN------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP--------- 315
           N L+ T+  N       S+IRVN+FNS +Y+ +    +  A+HIYH+++QP         
Sbjct: 421 NYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQPRVRSHACEN 480

Query: 316 -------------------------------------DALKP--STFLLYAKGKPAIIKG 336
                                                   KP    FL+Y KG+P II+G
Sbjct: 481 DQYGKPGGCSDICLLANSHKARTCRCRSGFSLGSDGKSCKKPEHELFLVYGKGRPGIIRG 540

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396
           +        E  I PI +L  P  +D+H +  +IY+A+ TSY+I R+K+ G  +E ++  
Sbjct: 541 MDMGAKVPDEHMI-PIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTERETILKD 599

Query: 397 GIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           GI+NVEG+AVDWM +NLYWTD G   TI+VA++   +  RK L +G
Sbjct: 600 GIHNVEGVAVDWMGDNLYWTDDGPKKTISVARLEKAAQTRKTLIEG 645

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.
Homo sapiens (taxid: 9606)

>sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1

 Score =  239 bits (611), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 128/346 (36%), Positives = 193/346 (55%), Gaps = 58/346 (16%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct: 303 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 361

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct: 362 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 421

Query: 271 NNLFVTSWRN------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP--------- 315
           N L+ T+  N       S+IRVN+FNS +Y+ +    +  A+HIYH+++QP         
Sbjct: 422 NYLYATNSDNANTQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQPRVRSHACEN 481

Query: 316 -------------------------------------DALKP--STFLLYAKGKPAIIKG 336
                                                   KP    FL+Y KG+P II+G
Sbjct: 482 DQYGKPGGCSDICLLANSHKARTCRCRSGFSLGSDGKSCKKPEHELFLVYGKGRPGIIRG 541

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396
           +        E  I PI +L  P  +D+H +  +IY+A+ TSY+I R+K+ G  +E ++  
Sbjct: 542 MDMGAKVPDEHMI-PIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTERETILKD 600

Query: 397 GIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           GI+NVEG+AVDWM +NLYWTD G   TI+VA++   +  RK L +G
Sbjct: 601 GIHNVEGVAVDWMGDNLYWTDDGPKKTISVARLEKAAQTRKTLIEG 646

Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A.

Mus musculus (taxid: 10090)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score =  235 bits (599), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 195/346 (56%), Gaps = 58/346 (16%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C      C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct: 304 DRIFVCNKNGLTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 362

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G +R TI +G  +++LY +TVFE
Sbjct: 363 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKNRHTIIQGILIEHLYGLTVFE 422

Query: 271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP----DALKP 320
           N L+ T+  N       S+IRVN+FNS +Y+ +    +  A+HIYH+++QP     A +P
Sbjct: 423 NYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQPTVRSHACEP 482

Query: 321 ST--------------------------------------------FLLYAKGKPAIIKG 336
                                                         FL+Y KG+P II+G
Sbjct: 483 DQFGKPGGCSDICLLGNSHKSRTCRCRSGFSLGSDGKSCKKPEHELFLVYGKGRPGIIRG 542

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396
           +        ++ ++PI +L  P  +D+H +  +IY+A+ TSY+I R+K+ G  +E ++  
Sbjct: 543 MDMGAK-VPDEHMIPIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTERETILKD 601

Query: 397 GIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           GI+NVEG+AVDWM NNLYWTD G   TI+VA++   +  RK L +G
Sbjct: 602 GIHNVEGIAVDWMGNNLYWTDDGPKKTISVARLEKAAQTRKTLIEG 647

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 175/340 (51%), Gaps = 52/340 (15%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C      C+  IDL L  P+ IA+DP +G +FFT +G     +ER  +DG  R  
Sbjct: 305 DRIFVCNSNGSVCVTLIDLELHNPKAIAVDPIAGKLFFTDYGNV-AKVERCDMDGMNRTR 363

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           ++  K   P  + +D   K VYWVD YLD++  ++Y G +R T+ +G  V++LY ITVFE
Sbjct: 364 IIDSKTEQPAALALDLVNKLVYWVDLYLDYVGVVDYQGKNRHTVIQGRQVRHLYGITVFE 423

Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDAL------------ 318
           + L+ T+  N +I+R+N+FN  D  ++      + I IY ++ QP               
Sbjct: 424 DYLYATNSDNYNIVRINRFNGTDIHSLIKIENAWGIRIYQKRTQPTVRSHACEVDPYGMP 483

Query: 319 ------------------------------------KPSTFLLYAKGKPAIIKGLTFKRD 342
                                               K   FL Y KG+P I++G+     
Sbjct: 484 GGCSHICLLSSSYKTRTCRCRTGFNLGSDGRSCKRPKNELFLFYGKGRPGIVRGMDLNTK 543

Query: 343 GTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVE 402
              ++ ++PI +L  P  +D+H +  YIY+A+ TS++I R+K+ G  +E ++   + NVE
Sbjct: 544 -IADEYMIPIENLVNPRALDFHAETNYIYFADTTSFLIGRQKIDGTERETILKDDLDNVE 602

Query: 403 GMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           G+AVDW+ NNLYWT+ G   TINVA++   S  RK L +G
Sbjct: 603 GIAVDWIGNNLYWTNDGHRKTINVARLEKASQSRKTLLEG 642

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 174/340 (51%), Gaps = 52/340 (15%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C      C+  I+  L  P+ IA DP +G +FFT +G   P +ER  LDG  R  
Sbjct: 305 DRIFVCNFNGSVCVTLIESELHNPKAIAADPIAGKLFFTDYGNV-PKIERCDLDGMNRTR 363

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  K   P  + +D   + VYWVD YLD++  ++Y G +R TI +G  V++LY ITVFE
Sbjct: 364 IVYSKAEQPSALALDLVNRLVYWVDLYLDYVGVVDYQGKNRHTIVQGRQVKHLYGITVFE 423

Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP---------DAL--- 318
           + L+ TS  N +IIR+N+FN  D  +I        I  Y ++ QP         DA    
Sbjct: 424 DYLYATSSDNFNIIRINRFNGTDIHSIIKMESARGIRTYQKRTQPTVRSHACEVDAYGMP 483

Query: 319 ------------------------------------KPSTFLLYAKGKPAIIKGLTFKRD 342
                                               K   FL Y KG+P I++G+     
Sbjct: 484 GGCSHICLLSSSYKTRTCRCRTGFNMGSDGRSCKRPKNELFLFYGKGRPGIVRGMDLNTK 543

Query: 343 GTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVE 402
              ++ ++PI +L  P  +D+H +  YIY+A+ TS++I R+K+ G  +E ++   + NVE
Sbjct: 544 -IADECMIPIENLVNPRALDFHAEANYIYFADTTSFLIGRQKIDGTERETILKDDLDNVE 602

Query: 403 GMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           G+AVDW+ NNLYWT+ G   TINVA++   S  RK L +G
Sbjct: 603 GIAVDWIGNNLYWTNDGHRKTINVARLEKASQSRKTLLEG 642

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Mus musculus (taxid: 10090)

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 140/490 (28%), Positives = 231/490 (47%), Gaps = 76/490 (15%)

Query: 11  CVDADECLIDGSCDQTCTNTHLSYT-YTDEGFSFQ-GVKTHLYETIEAFWEECFGPMDIE 68
           C+D D+C I G CDQ C +    +    +EG+  + G      ++  A         D+ 
Sbjct: 345 CIDFDDCQIWGICDQKCESRQGRHQCLCEEGYILERGQHCKSNDSFSAASIIFSNGRDLL 404

Query: 69  EWD-EGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA--T 125
             D  G +F   A+             ++ +D +  K R    DP    +F T      T
Sbjct: 405 VGDLHGRNFRILAESK-------NRGIVMGVDFHYQKHRVFWTDPMQAKVFSTDINGLNT 457

Query: 126 RPMLERSLLDGTERFPM--VTHKIVYPEA----IYFCTHYMEHCMIAIDLNLSKPRGIAL 179
           + +L  S+ D  E   +  + +K+   E     I          +  I  NL  PRGIAL
Sbjct: 458 QEILNVSI-DAPENLAVDWINNKLYLVETRVNRIDVVNLEGNQRVTLITENLGHPRGIAL 516

Query: 180 DPTSGYMFFTKWGAT--RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY 237
           DPT GY+FF+ WG+   +P +ER+ +DG+ R  +VT K+ +P G+T+D  +K VYWVD+ 
Sbjct: 517 DPTVGYLFFSDWGSLSGQPKVERAFMDGSNRKDLVTTKLGWPAGITLDLVSKRVYWVDSR 576

Query: 238 LDFIDRINYDGTDRKTI-RKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYET 296
            D+I+ + YDG  RKT+ R G  V + + I++FE ++F T W   ++++ NKF   + + 
Sbjct: 577 YDYIETVTYDGIQRKTVARGGSLVPHPFGISLFEEHVFFTDWTKMAVMKANKFTDTNPQV 636

Query: 297 IANFS-RPFAIHIYHRQKQPDALKP----------------------------------- 320
               S  PF + +YH  +QP+A  P                                   
Sbjct: 637 YHQSSLTPFGVTVYHALRQPNATNPCGNNNGGCAQICVLSHRTDNGGLGYRCKCEFGFEL 696

Query: 321 ----------STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSV---IDYHEKE 367
                       FLL++      ++G+ F    T E  ++P+T    PS    ID+  + 
Sbjct: 697 DADEHHCVAVKNFLLFS--SQTAVRGIPFTLS-TQEDVMVPVTG--SPSFFVGIDFDAQH 751

Query: 368 EYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAK 427
             I+Y++L+  +I ++K+ G GKEV+    + NVE ++ DW++ NLYWTD G  ++ V K
Sbjct: 752 STIFYSDLSKNIIYQQKIDGTGKEVITANRLQNVECLSFDWISRNLYWTDGGSKSVTVMK 811

Query: 428 ISDFSIRKVL 437
           ++D S R+++
Sbjct: 812 LADKSRRQII 821

Acts together with cubilin to mediate HDL endocytosis.

Mus musculus (taxid: 10090)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score =  194 bits (494), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 135/508 (26%), Positives = 233/508 (45%), Gaps = 112/508 (22%)

Query: 11  CVDADECLIDGSCDQTCTNTHLSYT-YTDEGFSFQ-GVKTHLYETIEAFWEECFGPMDIE 68
           C+D D+C I G CDQ C N    +    +EG+  + G      ++  A         D+ 
Sbjct: 345 CIDFDDCQIWGICDQKCENRQGRHQCLCEEGYILERGQHCKSSDSFSAASVIFSNGRDLL 404

Query: 69  EWD-EGLSFLTFA---------------QEAIYFCTHYMEHCMIAIDLN----------- 101
             D  G +F   A               Q+   F T  M+  + + D+N           
Sbjct: 405 VGDLHGRNFRILAESKNRGMVMGVDFHYQKHRVFWTDPMQEKVFSTDINGLNTQEILNVS 464

Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
           +  P  +A+D  +  ++  +    R  ++   L+G +R  ++T                 
Sbjct: 465 VDTPENLAVDWINNKLYLVETKVNR--IDVVNLEGNQRVTLITE---------------- 506

Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT--RPMLERSLLDGTERFPMVTHKIVYP 219
                   NL  PRGIALDPT GY+FF+ WG+   +P +ER+ +DG+ R  +VT K+ +P
Sbjct: 507 --------NLGHPRGIALDPTVGYLFFSDWGSLSGQPKVERAFMDGSNRKDLVTTKVGWP 558

Query: 220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI-RKGFPVQNLYDITVFENNLFVTSW 278
            G+T+D  +K VYWVD+  D+I+ + YDG  RKT+ R G  V + + I++FE ++F T W
Sbjct: 559 AGITLDLVSKRVYWVDSRYDYIETVTYDGIQRKTVARGGSLVPHPFGISLFEEHVFFTDW 618

Query: 279 RNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKP----------------- 320
              ++++ +KF   + +     S RP  + +YH  +QP+A  P                 
Sbjct: 619 TKMAVMKASKFTETNPQVYHQSSLRPHGVTVYHALRQPNATNPCGSNNGGCAQVCVLSHR 678

Query: 321 ----------------------------STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI 352
                                         FLL++      ++G+ F    T E  ++P+
Sbjct: 679 TDNGGLGYRCKCEFGFELDDDEHRCVAVKNFLLFS--SKTAVRGIPFTLS-TQEDVMVPV 735

Query: 353 TDLKRPSV---IDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM 409
           T    PS    ID+  +   ++Y++L+  +I ++K+ G GKEV+    + +VE +  DW+
Sbjct: 736 TG--SPSFFVGIDFDAQHSTVFYSDLSKDIIYKQKIDGTGKEVITANRLESVECLTFDWI 793

Query: 410 ANNLYWTDAGIGTINVAKISDFSIRKVL 437
           + NLYWTD G+ ++ V +++D S R+++
Sbjct: 794 SRNLYWTDGGLKSVTVLRLADKSRRQII 821

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3

 Score =  183 bits (465), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 137/494 (27%), Positives = 220/494 (44%), Gaps = 100/494 (20%)

Query: 11  CVDADECLIDGSCDQTCTNTHLSYT-YTDEGFSFQ----GVKTHLYETIEAFWEECFGPM 65
           C D +EC  +G C Q CTNT  ++  + + G+  +      K    E +  F        
Sbjct: 393 CQDVNECAEEGYCSQGCTNTEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 452

Query: 66  DIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSK--------------------- 104
            +    E    L   + AI    H+    +   D+ L +                     
Sbjct: 453 VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 512

Query: 105 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCM 164
           P G+A+D     +++T  G +R  +E + LDG  R  ++                     
Sbjct: 513 PGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHRKVLLWQ------------------- 551

Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV 224
                +L KPR IAL P  G +++T WG T P +E S +DG+ R  +    + +P G+T+
Sbjct: 552 -----SLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTI 605

Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRK-TIRKGFPVQNLYDITVFENNLFVTSWRNQSI 283
           D+  + +YWVD     I+R N DG+ RK  I +G P  + + ITVFE++L+ T W  +SI
Sbjct: 606 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP--HPFAITVFEDSLYWTDWHTKSI 663

Query: 284 IRVNKFNSDDYETIAN-FSRPFAIHIYHRQKQPDALK--------------PS------- 321
              NKF   + E I N    P  IH  H Q+QP                  PS       
Sbjct: 664 NSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCA 723

Query: 322 ------------------TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDY 363
                              FLL+A+     I+ ++F  +  ++  I P+ D++    +D+
Sbjct: 724 CPTGFRKINSHACAQSLDKFLLFARRMD--IRRISFDTEDLSDDVI-PLADVRSAVALDW 780

Query: 364 HEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTI 423
             +++++Y+ ++++  I R K  G G+EVV+DT + +  G+A+DW+ N LYWTDAG   I
Sbjct: 781 DSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRI 840

Query: 424 NVAKISDFSIRKVL 437
            VA  +D S+R VL
Sbjct: 841 EVAN-TDGSMRTVL 853

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Mus musculus (taxid: 10090)

>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 221/494 (44%), Gaps = 100/494 (20%)

Query: 11  CVDADECLIDGSCDQTCTNTHLSY-TYTDEGFSFQ----GVKTHLYETIEAFWEECFGPM 65
           C D +EC  +G C Q CTN+  ++  + + G+  +      K    E +  F        
Sbjct: 393 CQDVNECAEEGYCSQGCTNSEGAFQCWCETGYELRPDRRSCKALGPEPVLLFANRIDIRQ 452

Query: 66  DIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSK--------------------- 104
            +    E    L   + AI    H+    +   D+ L +                     
Sbjct: 453 VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 512

Query: 105 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCM 164
           P G+A+D     +++T  G +R  +E + LDG  R  ++                     
Sbjct: 513 PGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHRKVLLWQ------------------- 551

Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV 224
                NL KPR IAL P  G +++T WG T P +E S +DG+ R  +    + +P G+T+
Sbjct: 552 -----NLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTI 605

Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRKT-IRKGFPVQNLYDITVFENNLFVTSWRNQSI 283
           D+  + +YWVD     I+R N DG+ RK  I +G P  + + ITVFE++L+ T W  +SI
Sbjct: 606 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP--HPFAITVFEDSLYWTDWHTKSI 663

Query: 284 IRVNKFNSDDYETIAN-FSRPFAIHIYHRQKQPDALK--------------PS------- 321
              NKF   + E I N    P  IH  H Q+QP                  PS       
Sbjct: 664 NSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCA 723

Query: 322 ------------------TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDY 363
                              FLL+A+     I+ ++F  +  ++  ++P+ D++    +D+
Sbjct: 724 CPTGFRKISSHACAQSLDKFLLFARRMD--IRRISFDTEDLSDD-VIPLADVRSAVALDW 780

Query: 364 HEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTI 423
             +++++Y+ ++++  I R K  G G+EVV+DT + +  G+A+DW+ N LYWTDAG   I
Sbjct: 781 DSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRI 840

Query: 424 NVAKISDFSIRKVL 437
            VA  +D S+R VL
Sbjct: 841 EVAN-TDGSMRTVL 853

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2

 Score =  180 bits (457), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/494 (27%), Positives = 220/494 (44%), Gaps = 100/494 (20%)

Query: 11  CVDADECLIDGSCDQTCTNTHLSYT-YTDEGFSFQ----GVKTHLYETIEAFWEECFGPM 65
           C D +EC  +G C Q CTN+  ++  + + G+  +      K    E +  F        
Sbjct: 393 CQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 452

Query: 66  DIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSK--------------------- 104
            +    E    L   + AI    H+    +   D+ L +                     
Sbjct: 453 VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 512

Query: 105 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCM 164
           P G+A+D     +++T  G +R  +E + LDG  R  ++                     
Sbjct: 513 PGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHRKVLLWQ------------------- 551

Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV 224
                +L KPR IAL P  G +++T WG T P +E S +DG+ R  +    + +P G+T+
Sbjct: 552 -----SLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTI 605

Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRK-TIRKGFPVQNLYDITVFENNLFVTSWRNQSI 283
           D+  + +YWVD     I+R N DG+ RK  I +G P  + + ITVFE++L+ T W  +SI
Sbjct: 606 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP--HPFAITVFEDSLYWTDWHTKSI 663

Query: 284 IRVNKFNSDDYETIAN-FSRPFAIHIYHRQKQPDALK--------------PS------- 321
              NKF   + E I N    P  IH  H Q+QP                  PS       
Sbjct: 664 NSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCA 723

Query: 322 ------------------TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDY 363
                              FLL+A+     I+ ++F  +  ++  I P+ D++    +D+
Sbjct: 724 CPTGFRKINSHACAQSLDKFLLFARRMD--IRRISFDTEDLSDDVI-PLADVRSAVALDW 780

Query: 364 HEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTI 423
             +++++Y+ ++++  I R K  G G++VV+DT + +  G+A+DW+ N LYWTDAG   I
Sbjct: 781 DSRDDHVYWTDVSTDTISRAKWDGTGQKVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRI 840

Query: 424 NVAKISDFSIRKVL 437
            VA  +D S+R VL
Sbjct: 841 EVAN-TDGSMRTVL 853

Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
242018517	4603	low-density lipoprotein receptor, putati	0.940	0.089	0.382	4e-92
328702065	2150	PREDICTED: low-density lipoprotein recep	0.652	0.133	0.468	2e-85
427796811	4696	Putative prolow-density lipoprotein rece	0.652	0.061	0.417	2e-78
270010181	4576	hypothetical protein TcasGA2_TC009548 [T	0.965	0.092	0.346	9e-76
292627062	4547	PREDICTED: low-density lipoprotein recep	0.927	0.089	0.311	6e-63
431914039	4544	Prolow-density lipoprotein receptor-rela	0.654	0.063	0.375	1e-61
338726177	4487	PREDICTED: LOW QUALITY PROTEIN: prolow-d	0.654	0.064	0.375	1e-61
291409329	4544	PREDICTED: low density lipoprotein recep	0.654	0.063	0.372	1e-61
410964879	4544	PREDICTED: prolow-density lipoprotein re	0.654	0.063	0.372	5e-61
301761302	4552	PREDICTED: LOW QUALITY PROTEIN: prolow-d	0.654	0.063	0.372	5e-61

>gi|242018517|ref|XP_002429721.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212514727|gb|EEB16983.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 193/505 (38%), Positives = 276/505 (54%), Gaps = 91/505 (18%)

Query: 8   KTQCVDADECLIDGSCDQTCTNTHLSYTYTD-EGFSFQGVKTHLYETIEAFWEECFGPMD 66
              C+D DEC I+GSCDQ C NT  S++ +   G++ +GV+           EE    + 
Sbjct: 26  NNSCIDLDECEIEGSCDQICRNTQGSFSCSCVNGYTERGVRCFAQNVPP---EEPPSLLY 82

Query: 67  IEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLS-KPRGIALDPTSGYMFFTKWGAT 125
               D GL +L  +               ++   NL+ +   +  D  +  + + +  +T
Sbjct: 83  SSSSDIGLIYLNGS--------------FVSKSTNLNVQTLSLDFDHRNRSVCYVRRNST 128

Query: 126 RPMLERSLLDGTERFPMVTHKIVYP-----------------------EAIYFCTHYMEH 162
            P  +   LD  E+   +   I++P                       E I+ C   ++ 
Sbjct: 129 NPSFKCVSLDNFEKSWDLPKSIMFPLHSKTHLVLDWLTGNWYFLDDSREMIFLCNSTLKS 188

Query: 163 CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGV 222
           C I  D +LS+P+GI LDPT G++FFTKW     +LER+LLDGT+R  +V  KIVYPYG+
Sbjct: 189 CTIICDSDLSRPKGITLDPTKGFLFFTKWSDDAAVLERALLDGTQRLVLVDKKIVYPYGL 248

Query: 223 TVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQS 282
           TVDFP++H+YWVDTYLD I+RI+YDG +RK IRKG PVQNLYDITVFEN+LFVTSWRN +
Sbjct: 249 TVDFPSEHIYWVDTYLDVIERIDYDGKNRKVIRKGVPVQNLYDITVFENDLFVTSWRNFT 308

Query: 283 IIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDA------------------------- 317
           IIR+NKFNS+DYETI NFSRPF+IH  HRQ+QP                           
Sbjct: 309 IIRLNKFNSNDYETIGNFSRPFSIHAVHRQRQPIVNHPCTVNNGGCQHICVPSYHKGVPI 368

Query: 318 ------------------LKPSTFLLYAKGKPAIIKGLTFKRDGTTE----QAIMPITDL 355
                               PSTF++Y K +P +IKG+    +        + +MPI ++
Sbjct: 369 AQCLCQTGYHEVKGRCLIKPPSTFIVYGKARPPMIKGIAESSNPKLSTYFTEVMMPILNV 428

Query: 356 KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYW 415
            RP+ ID+  K EYIY+++  ++ IER+ + G  +EVV+  G+  VEG+A D++ +N+YW
Sbjct: 429 TRPNSIDFDVKNEYIYFSD--THSIERQHINGSKREVVVSKGLIYVEGIAFDYLGHNIYW 486

Query: 416 TDAGIGTINVAKISDFSIRKVLYKG 440
            D G   I VAK+S+ +I K +  G
Sbjct: 487 ADEGSAVIKVAKVSNSTIVKTIVSG 511

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702065|ref|XP_001946912.2| PREDICTED: low-density lipoprotein receptor-related protein 1-like [Acyrthosiphon pisum]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/331 (46%), Positives = 212/331 (64%), Gaps = 44/331 (13%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + IY CT+ M++C I ID+NL+KPR IALDPT G+MFFTKWG    M+ER+ L G +R P
Sbjct: 351 DMIYMCTYNMKYCQILIDVNLNKPRSIALDPTKGFMFFTKWGQYPAMVERAQLSGLDRVP 410

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           ++ HKIVYPYG+TVD P++H+YWVDTYLDF++RINYDG++R+TI+KG+PV NLYDI+VFE
Sbjct: 411 LIDHKIVYPYGLTVDIPSEHIYWVDTYLDFVERINYDGSNRRTIKKGYPVINLYDISVFE 470

Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYET-IANFSRPFAIHIYHRQKQPDALKPS-------- 321
           N+++VTSWR QS+I++NKFN   YE+ I N SRPF IH+YHRQ+QP+   P         
Sbjct: 471 NHMYVTSWRLQSVIKLNKFNGSYYESLITNLSRPFTIHVYHRQEQPEINHPCMINNGGCD 530

Query: 322 -----------------------------------TFLLYAKGKPAIIKGLTFKRDGTTE 346
                                               FL++ K  P +IKG++       +
Sbjct: 531 HICVTAYKNKEAIAQCLCQPGYRLTSGKCISSKLPAFLIFGKSSPPMIKGISMISKNHKQ 590

Query: 347 QAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAV 406
           Q I+P+ + + P+ IDY  K + IYY+      IER ++ G  KE+V      N EG+A+
Sbjct: 591 QIILPLDEGRIPTTIDYDVKTQSIYYSGGKKNAIERIRLNGTKKELVKMLPEMNCEGLAI 650

Query: 407 DWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
           DW   NL+WTD G+GT+NV KI D + +KVL
Sbjct: 651 DWTGRNLFWTDEGLGTVNVFKIDDPTKQKVL 681

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796811|gb|JAA63857.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus]

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 142/340 (41%), Positives = 201/340 (59%), Gaps = 53/340 (15%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           E I+ C   +  C+  ID+ LSKPRGIALDP  G+MF T+WG+  P+LER+ LDGTER  
Sbjct: 367 ETIFLCNASLSVCVTVIDVGLSKPRGIALDPYKGFMFVTEWGSAAPVLERAHLDGTERTK 426

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIVYP+G+ VD P + VYWVDTYLD ++RI+YDG+ R T+ +G P++NLY ITVFE
Sbjct: 427 LVEQKIVYPFGIAVDLPREEVYWVDTYLDMVERISYDGSRRTTVFRGAPMRNLYGITVFE 486

Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPD------------- 316
           N L+VTSW + S++ V+K+N  D  T+ AN +RPF+IH+YHRQ++P              
Sbjct: 487 NYLYVTSWHSNSVVVVHKYNQSDIRTVKANLTRPFSIHVYHRQRKPYREHPCSQNNGNCE 546

Query: 317 -------------------------------ALKPSTFLLYAKGKPAIIKGLTFKRDGTT 345
                                          A+ P+ FLLYA+G+P  +KG++   D   
Sbjct: 547 HLCIPSTIKGTLTAQCICRPGFRLADQGRCVAVAPAQFLLYARGRPGAVKGISTSDDFPE 606

Query: 346 --------EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG 397
                    + + PI  L RP+ +DY  K   +YY++   +VIER+ + G  +EV    G
Sbjct: 607 SKVFPLLRREVMAPIRSLSRPTALDYDAKTRTVYYSDAQQFVIERQGLDGSKREVFTSKG 666

Query: 398 IYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
           + N EG+AVDW   NLYWTD G   I VA++ + ++R+ L
Sbjct: 667 LNNCEGLAVDWAGRNLYWTDEGHLGIWVARLDNATLRRQL 706

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010181|gb|EFA06629.1| hypothetical protein TcasGA2_TC009548 [Tribolium castaneum]

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 253/493 (51%), Gaps = 68/493 (13%)

Query: 6   PNKTQCVDADECLIDGSCDQTCTNTHLSYTYTD-EGFSFQGVKTHLYETIEAF------- 57
           P  ++CVDADEC +D +C Q C NT  S+  +   G+   G          A        
Sbjct: 192 PEGSRCVDADECELDNTCAQVCKNTVGSFECSCVSGYEKNGTDCVALNVPPALDASIVFS 251

Query: 58  --WEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSG 115
              E     +  E W    S       A+ F   +  H +  +  N SK   + ++    
Sbjct: 252 TQAEIARLKLSGEAWSSNSSLQLLNSTALEF--VFNNHSICYVHHNFSKASLVCVN-IDD 308

Query: 116 YMFFTKWGATRPMLERSLLDGTERFPM--VTHKIVY----PEAIYFCTHYMEHCMIAIDL 169
           +   T+      +LE    +  ++  M  V+    +     E    C+  +E C I I+ 
Sbjct: 309 FSQKTELKTQSTLLE---FESVQQMAMDWVSRNWYFLDDQREIFLVCSERLEWCNILIEN 365

Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
           +LSKPR +ALDPT GYMFFTKWG + PM+ER  +DG+ER  +V HKIVYPYGVTVD+PT+
Sbjct: 366 DLSKPRALALDPTRGYMFFTKWGHSPPMVERCKMDGSERKAVVNHKIVYPYGVTVDYPTQ 425

Query: 230 HVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKF 289
           H+YWVDTYLDF++R++YDG DRKTI +G  VQNLY I+VF+  L+++SW +  II ++KF
Sbjct: 426 HIYWVDTYLDFVERVDYDGKDRKTIMRGLKVQNLYGISVFQRKLYLSSWYSNDIIELDKF 485

Query: 290 NSDDYETIANFSRPFAIHIYHRQKQP---------------------------------- 315
              +   + N SRPF + +YHRQ+QP                                  
Sbjct: 486 TMKEKILVQNISRPFNVLVYHRQRQPVVPHPCNSHSDCSHLCISNWKRDIAVKKCLCAAG 545

Query: 316 --------DALKPST-FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEK 366
                     +KPS  +LL AKGKPA IKG+      + ++ ++PIT + +P  IDY  K
Sbjct: 546 YQMTENNQCVVKPSQRYLLLAKGKPASIKGIELD---SNKETMIPITGINQPMAIDYDVK 602

Query: 367 EEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA 426
              I Y++    VIE  K+     + +    +   +G+A DWM+ N+YWTD  +G+I V 
Sbjct: 603 TGTIIYSDSHRKVIEGAKINDSSHKTIFQKNVRRCDGLAFDWMSRNVYWTDEEMGSIGVF 662

Query: 427 KISDFSIRKVLYK 439
           K+++ S  ++L +
Sbjct: 663 KLANSSQNRILLQ 675

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|292627062|ref|XP_001920591.2| PREDICTED: low-density lipoprotein receptor-related protein 1 [Danio rerio]

 Score =  247 bits (631), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 165/529 (31%), Positives = 254/529 (48%), Gaps = 121/529 (22%)

Query: 5   GPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTD-EGFSFQGVKTHL------------- 50
           G +   C D +EC + G+C QTCTN+  SYT +  EG+  Q                   
Sbjct: 152 GEDGKTCKDFNECAVYGTCSQTCTNSEGSYTCSCVEGYLPQLDNRSCKAKNDPVDRLPFL 211

Query: 51  ----YETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYF-------------CTHY--- 90
                + I+A       P+ I +         +AQE + +             C  +   
Sbjct: 212 LIANSQNIQATSLSGANPITINDKQTTTMDFIYAQETVCWIHMGDSPTASQLKCAKFPNA 271

Query: 91  ---MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI 147
               E   I I L+L     +A+D  +G  +F              +D  +         
Sbjct: 272 KSFTEEKTINISLSLHHMEQMAIDWLTGNFYF--------------VDNVD--------- 308

Query: 148 VYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 207
              + I+ C+     C+I +D+ L  P+GIALDP  G +FFT +G T P +ER  +DG  
Sbjct: 309 ---DRIFVCSKDGSICVILLDMELYSPKGIALDPAMGKVFFTDYGQT-PKVERCDMDGQN 364

Query: 208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDIT 267
           R  +V  KIV+P G+T+D   K VYW D YLD+I+ ++Y+G +R TI +G  +++LY +T
Sbjct: 365 RTKLVDSKIVFPNGITLDLANKLVYWTDAYLDYIEVVDYEGKNRHTIIQGLLIEHLYGLT 424

Query: 268 VFENNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPD----- 316
           VFEN L+ T+  N       S+IRVN+FNS D++ +    +  A+H+YH+++QP      
Sbjct: 425 VFENYLYATNSDNANMQPKTSVIRVNRFNSSDFQVVTRVDKGGALHVYHQRRQPTVRSHA 484

Query: 317 -ALKP------------------------------------------STFLLYAKGKPAI 333
            AL P                                            FL+Y KG+P +
Sbjct: 485 CALDPFGKPGGCSDICLLANSHKTRTCRCRSGFSLGSDGKSCKKPEHELFLIYGKGRPGV 544

Query: 334 IKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVV 393
           I+G+        ++ I+PI +L  P  +D+H + E+IY+A+ TSY+I R+K+ G  ++++
Sbjct: 545 IRGMDM-HSTVYDEHIVPIENLNNPRALDFHAETEFIYFADATSYIIGRQKLDGTERDII 603

Query: 394 IDTGIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           +  GI+ VEG+AVDWM  NLYWTD G   TI+VAK+   S  RK L +G
Sbjct: 604 VKDGIHTVEGIAVDWMGQNLYWTDDGPKKTISVAKLEKASQTRKTLIEG 652

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431914039|gb|ELK15301.1| Prolow-density lipoprotein receptor-related protein 1 [Pteropus alecto]

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 130/346 (37%), Positives = 194/346 (56%), Gaps = 58/346 (16%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C    + C+  +DL L  P+GIALDPT G +FFT +G   P +ER  +DG  R  
Sbjct: 302 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPTMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct: 361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query: 271 NNLFVTSWRN------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP--------- 315
           N L+ T+  N       S+IRVN+FNS DY+ +    +  A+HIYH+++QP         
Sbjct: 421 NYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQRRQPRVRSHACEN 480

Query: 316 -------------------------------------DALKP--STFLLYAKGKPAIIKG 336
                                                   KP    FL+Y KG+P II+G
Sbjct: 481 DQYGKPGGCSDICLLANSHKARTCRCRSGFSLGSDGKSCKKPEHELFLVYGKGRPGIIRG 540

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396
           +        E  I PI +L  P  +D+H +  +IY+A+ TSY+I R+K+ G  +E ++  
Sbjct: 541 MDMGAKVPDEHMI-PIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTERETILKD 599

Query: 397 GIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           GI+NVEG+AVDWM +NLYWTD G   TI+VA++   +  RK L +G
Sbjct: 600 GIHNVEGVAVDWMGDNLYWTDDGPKKTISVARLEKAAQTRKTLIEG 645

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338726177|ref|XP_001916726.2| PREDICTED: LOW QUALITY PROTEIN: prolow-density lipoprotein receptor-related protein 1-like [Equus caballus]

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 130/346 (37%), Positives = 193/346 (55%), Gaps = 58/346 (16%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct: 302 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct: 361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query: 271 NNLFVTSWRN------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP--------- 315
           N L+ T+  N       S+IRVN+FNS DY+ +    +  A+HIYH+++QP         
Sbjct: 421 NYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQRRQPRVRSHACEN 480

Query: 316 -------------------------------------DALKP--STFLLYAKGKPAIIKG 336
                                                   KP    FL+Y KG+P II+G
Sbjct: 481 DQYGKPGGCSDICLLANSHKARTCRCRSGFSLGSDGKSCKKPEHELFLVYGKGRPGIIRG 540

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396
           +        E  I PI +L  P  +D+H +  +IY+A+ TSY+I R+K+ G  +E ++  
Sbjct: 541 MDMGAKVPDEHMI-PIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTERETILKD 599

Query: 397 GIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           GI+NVEG+AVDWM NNLYWTD G   TI+VA++   +  RK L +G
Sbjct: 600 GIHNVEGVAVDWMGNNLYWTDDGPKKTISVARLEKAAQTRKTLIEG 645

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291409329|ref|XP_002720990.1| PREDICTED: low density lipoprotein receptor-related protein 1 [Oryctolagus cuniculus]

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 129/346 (37%), Positives = 194/346 (56%), Gaps = 58/346 (16%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C H  + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct: 302 DRIFVCNHNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct: 361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query: 271 NNLFVTSWRN------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP--------- 315
           N L+ T+  N       S+IRVN+FNS +Y+ +    +  A+HIYH+++QP         
Sbjct: 421 NYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQPRVRSHACEN 480

Query: 316 -------------------------------------DALKP--STFLLYAKGKPAIIKG 336
                                                   KP    FL+Y KG+P II+G
Sbjct: 481 DQYGKPGGCSDICLLANSHKARTCRCRSGFSLGSDGKSCKKPEHELFLVYGKGRPGIIRG 540

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396
           +        E  I PI +L  P  +D+H +  +IY+A+ TSY+I R+K+ G  +E ++  
Sbjct: 541 MDMGAKVPDEHMI-PIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTERETILKD 599

Query: 397 GIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           GI+NVEG+AVDWM +NLYWTD G   TI+VA++   +  RK L +G
Sbjct: 600 GIHNVEGVAVDWMGDNLYWTDDGPKKTISVARLEKAAQTRKTLIEG 645

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410964879|ref|XP_003988980.1| PREDICTED: prolow-density lipoprotein receptor-related protein 1 [Felis catus]

 Score =  241 bits (615), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 129/346 (37%), Positives = 193/346 (55%), Gaps = 58/346 (16%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct: 302 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct: 361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query: 271 NNLFVTSWRN------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP--------- 315
           N L+ T+  N       S+IRVN+FNS DY+ +    +  A+HIYH+++QP         
Sbjct: 421 NYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQRRQPRVRSHACEN 480

Query: 316 -------------------------------------DALKP--STFLLYAKGKPAIIKG 336
                                                   KP    FL+Y KG+P II+G
Sbjct: 481 DQFGKPGGCSDICLLANSHKARTCRCRSGFSLGSDGKSCKKPEHELFLVYGKGRPGIIRG 540

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396
           +        E  I PI +L  P  +D+H +  +IY+A+ TSY+I R+K+ G  +E ++  
Sbjct: 541 MDMGAKVPDEHMI-PIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTERETILKD 599

Query: 397 GIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           GI+NVEG+AVDWM +NLYWTD G   TI+VA++   +  RK L +G
Sbjct: 600 GIHNVEGVAVDWMGDNLYWTDDGPKKTISVARLEKAAQTRKTLIEG 645

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301761302|ref|XP_002916050.1| PREDICTED: LOW QUALITY PROTEIN: prolow-density lipoprotein receptor-related protein 1-like [Ailuropoda melanoleuca]

 Score =  241 bits (615), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 129/346 (37%), Positives = 193/346 (55%), Gaps = 58/346 (16%)

Query: 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
           + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct: 304 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 362

Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
           +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct: 363 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 422

Query: 271 NNLFVTSWRN------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP--------- 315
           N L+ T+  N       S+IRVN+FNS DY+ +    +  A+HIYH+++QP         
Sbjct: 423 NYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQRRQPRVRSHACEN 482

Query: 316 -------------------------------------DALKP--STFLLYAKGKPAIIKG 336
                                                   KP    FL+Y KG+P II+G
Sbjct: 483 DQFGKPGGCSDICLLANSHKARTCRCRSGFSLGSDGKSCKKPEHELFLVYGKGRPGIIRG 542

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396
           +        E  I PI +L  P  +D+H +  +IY+A+ TSY+I R+K+ G  +E ++  
Sbjct: 543 MDMGAKVPDEHMI-PIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTERETILKD 601

Query: 397 GIYNVEGMAVDWMANNLYWTDAG-IGTINVAKISDFS-IRKVLYKG 440
           GI+NVEG+AVDWM +NLYWTD G   TI+VA++   +  RK L +G
Sbjct: 602 GIHNVEGVAVDWMGDNLYWTDDGPKKTISVARLEKAAQTRKTLIEG 647

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
UNIPROTKB|I3LMD6	780	LOC100514839 "Uncharacterized	0.372	0.210	0.426	9.9e-68
UNIPROTKB|P98157	4543	LRP1 "Low-density lipoprotein	0.397	0.038	0.408	2.4e-66
UNIPROTKB|E2R4Q1	4528	LRP1 "Uncharacterized protein"	0.372	0.036	0.426	3.7e-64
UNIPROTKB|J9P315	4544	LRP1 "Uncharacterized protein"	0.372	0.036	0.426	3.8e-64
UNIPROTKB|E1BGJ0	4544	LRP1 "Uncharacterized protein"	0.372	0.036	0.426	3.8e-64
UNIPROTKB|G3V928	4545	Lrp1 "Protein Lrp1" [Rattus no	0.372	0.036	0.421	9.9e-64
MGI|MGI:96828	4545	Lrp1 "low density lipoprotein	0.372	0.036	0.421	9.9e-64
ZFIN|ZDB-GENE-030131-7126	4549	lrp1b "low density lipoprotein	0.718	0.069	0.325	2.1e-63
UNIPROTKB|Q07954	4544	LRP1 "Prolow-density lipoprote	0.372	0.036	0.421	4.2e-63
ZFIN|ZDB-GENE-070912-401	4456	lrp1bb "low density lipoprotei	0.406	0.040	0.365	1.4e-55

UNIPROTKB|I3LMD6 LOC100514839 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 391 (142.7 bits), Expect = 9.9e-68, Sum P(3) = 9.9e-68
 Identities = 73/171 (42%), Positives = 112/171 (65%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct:   239 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 297

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct:   298 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 357

Query:   271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
             N L+ T+  N       S+IRVN+FNS DY+ +    +  A+HIYH+++QP
Sbjct:   358 NYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQRRQP 408

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P98157 LRP1 "Low-density lipoprotein receptor-related protein 1" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 2.4e-66, Sum P(4) = 2.4e-66
 Identities = 78/191 (40%), Positives = 118/191 (61%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C      C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct:   304 DRIFVCNKNGLTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 362

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G +R TI +G  +++LY +TVFE
Sbjct:   363 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKNRHTIIQGILIEHLYGLTVFE 422

Query:   271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPD----ALKP 320
             N L+ T+  N       S+IRVN+FNS +Y+ +    +  A+HIYH+++QP     A +P
Sbjct:   423 NYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQPTVRSHACEP 482

Query:   321 STFLLYAKGKP 331
               F     GKP
Sbjct:   483 DQF-----GKP 488

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 391 (142.7 bits), Expect = 3.7e-64, Sum P(3) = 3.7e-64
 Identities = 73/171 (42%), Positives = 112/171 (65%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct:   302 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct:   361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query:   271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
             N L+ T+  N       S+IRVN+FNS DY+ +    +  A+HIYH+++QP
Sbjct:   421 NYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQRRQP 471

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 391 (142.7 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
 Identities = 73/171 (42%), Positives = 112/171 (65%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct:   302 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct:   361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query:   271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
             N L+ T+  N       S+IRVN+FNS DY+ +    +  A+HIYH+++QP
Sbjct:   421 NYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQRRQP 471

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E1BGJ0 LRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 391 (142.7 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
 Identities = 73/171 (42%), Positives = 112/171 (65%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct:   302 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct:   361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query:   271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
             N L+ T+  N       S+IRVN+FNS DY+ +    +  A+HIYH+++QP
Sbjct:   421 NYLYATNSDNANAQQKTSVIRVNRFNSTDYQVVTRVDKGGALHIYHQRRQP 471

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)]

 Score = 387 (141.3 bits), Expect = 9.9e-64, Sum P(3) = 9.9e-64
 Identities = 72/171 (42%), Positives = 112/171 (65%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct:   303 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 361

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct:   362 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 421

Query:   271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
             N L+ T+  N       S+IRVN+FNS +Y+ +    +  A+HIYH+++QP
Sbjct:   422 NYLYATNSDNANTQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQP 472

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

MGI|MGI:96828 Lrp1 "low density lipoprotein receptor-related protein 1" [Mus musculus (taxid:10090)]

 Score = 387 (141.3 bits), Expect = 9.9e-64, Sum P(3) = 9.9e-64
 Identities = 72/171 (42%), Positives = 112/171 (65%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct:   303 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 361

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct:   362 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 421

Query:   271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
             N L+ T+  N       S+IRVN+FNS +Y+ +    +  A+HIYH+++QP
Sbjct:   422 NYLYATNSDNANTQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQP 472

GO:0002020 "protease binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0005905 "coated pit" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IMP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0032370 "positive regulation of lipid transport" evidence=IMP

GO:0032374 "regulation of cholesterol transport" evidence=IMP

GO:0032403 "protein complex binding" evidence=ISO

GO:0032429 "regulation of phospholipase A2 activity" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0035909 "aorta morphogenesis" evidence=IMP

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043277 "apoptotic cell clearance" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051222 "positive regulation of protein transport" evidence=ISO

GO:0097242 "beta-amyloid clearance" evidence=IMP

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IMP

ZFIN|ZDB-GENE-030131-7126 lrp1b "low density lipoprotein receptor-related protein 1b" [Danio rerio (taxid:7955)]

 Score = 421 (153.3 bits), Expect = 2.1e-63, Sum P(2) = 2.1e-63
 Identities = 115/353 (32%), Positives = 177/353 (50%)

Query:     5 GPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTD-EGFSFQ----GVKTH---------- 49
             G +   C D +EC + G+C QTCTN+  SYT +  EG+  Q      K            
Sbjct:   152 GEDGKTCKDFNECAVYGTCSQTCTNSEGSYTCSCVEGYLPQLDNRSCKAKNDPVDRLPFL 211

Query:    50 LY---ETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSK-P 105
             L    + I+A       P+ I +         +AQE +  C  +M     A  L  +K P
Sbjct:   212 LIANSQNIQATSLSGANPITINDKQTTTMDFIYAQETV--CWIHMGDSPTASQLKCAKFP 269

Query:   106 RGIALDPTSGYMFFTKWGATRPMLERSLLDG-TERFPMVTHKIVYPEAIYFCTHYMEHCM 164
                +               +   +E+  +D  T  F  V +     + I+ C+     C+
Sbjct:   270 NAKSFTEEKTINI----SLSLHHMEQMAIDWLTGNFYFVDN---VDDRIFVCSKDGSICV 322

Query:   165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV 224
             I +D+ L  P+GIALDP  G +FFT +G T P +ER  +DG  R  +V  KIV+P G+T+
Sbjct:   323 ILLDMELYSPKGIALDPAMGKVFFTDYGQT-PKVERCDMDGQNRTKLVDSKIVFPNGITL 381

Query:   225 DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ--- 281
             D   K VYW D YLD+I+ ++Y+G +R TI +G  +++LY +TVFEN L+ T+  N    
Sbjct:   382 DLANKLVYWTDAYLDYIEVVDYEGKNRHTIIQGLLIEHLYGLTVFENYLYATNSDNANMQ 441

Query:   282 ---SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP 331
                S+IRVN+FNS D++ +    +  A+H+YH+++QP  ++     L   GKP
Sbjct:   442 PKTSVIRVNRFNSSDFQVVTRVDKGGALHVYHQRRQP-TVRSHACALDPFGKP 493

GO:0005509 "calcium ion binding" evidence=IEA

GO:1901342 "regulation of vasculature development" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q07954 LRP1 "Prolow-density lipoprotein receptor-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 387 (141.3 bits), Expect = 4.2e-63, Sum P(3) = 4.2e-63
 Identities = 72/171 (42%), Positives = 112/171 (65%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C    + C+  +DL L  P+GIALDP  G +FFT +G   P +ER  +DG  R  
Sbjct:   302 DRIFVCNRNGDTCVTLLDLELYNPKGIALDPAMGKVFFTDYGQI-PKVERCDMDGQNRTK 360

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V  KIV+P+G+T+D  ++ VYW D YLD+I+ ++Y+G  R+TI +G  +++LY +TVFE
Sbjct:   361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFE 420

Query:   271 NNLFVTSWRNQ------SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
             N L+ T+  N       S+IRVN+FNS +Y+ +    +  A+HIYH+++QP
Sbjct:   421 NYLYATNSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQP 471

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0042953 "lipoprotein transport" evidence=NAS

GO:0042954 "lipoprotein transporter activity" evidence=NAS

GO:0034185 "apolipoprotein binding" evidence=IDA;IPI

GO:0004872 "receptor activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0070325 "lipoprotein particle receptor binding" evidence=IC

GO:0032429 "regulation of phospholipase A2 activity" evidence=ISS

GO:0032374 "regulation of cholesterol transport" evidence=ISS

GO:0032370 "positive regulation of lipid transport" evidence=ISS

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0043277 "apoptotic cell clearance" evidence=ISS

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISS

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=ISS

GO:0032403 "protein complex binding" evidence=IDA

GO:0097242 "beta-amyloid clearance" evidence=TAS

ZFIN|ZDB-GENE-070912-401 lrp1bb "low density lipoprotein receptor-related protein 1Bb" [Danio rerio (taxid:7955)]

 Score = 324 (119.1 bits), Expect = 1.4e-55, Sum P(3) = 1.4e-55
 Identities = 68/186 (36%), Positives = 105/186 (56%)

Query:   151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210
             + I+ C    + C+  +DL+L  P+ IALDP  G +FFT +G     LER  +DGT R  
Sbjct:   189 DRIFVCNQLGDTCVTVVDLDLLNPKAIALDPLMGMLFFTDYGNVAK-LERCNMDGTNRTR 247

Query:   211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE 270
             +V +K+  P  V +D   K VYW D YLD+I+ ++Y+G +R TI +G+ V +L+ + VFE
Sbjct:   248 LVDYKVERPTAVALDLVKKLVYWADAYLDYIEMVDYNGKNRHTIMQGYQVAHLHGLAVFE 307

Query:   271 NNLFVTSWRNQS-----IIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLL 325
             + L+ T     S     I+R+N+FN  D E + +      I +YH+  QP  +K     +
Sbjct:   308 DYLYATRSEASSGTVVDILRINRFNVTDPEMLTSIGNAKTIRVYHKLCQPK-VKGHACEV 366

Query:   326 YAKGKP 331
              + GKP
Sbjct:   367 DSYGKP 372

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	440
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	7e-09
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	6e-07
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	2e-05
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	2e-05

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 391 EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS 429
             ++ +G+ +  G+AVDW+   LYWTD G+  I VA + 
Sbjct: 1   RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR 251
           ++  + +P G+ VD+    +YW D  LD I+  N DGT+R
Sbjct: 4   LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 98  IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER 139
           +   L  P G+A+D   G +++T WG    ++E + LDGT R
Sbjct: 4   LSSGLGHPNGLAVDWIEGRLYWTDWG--LDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 167 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER 208
           +   L  P G+A+D   G +++T WG    ++E + LDGT R
Sbjct: 4   LSSGLGHPNGLAVDWIEGRLYWTDWG--LDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
KOG1214|consensus	1289		100.0
KOG1215|consensus	877		100.0
KOG1214|consensus	1289		99.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.78
KOG1215|consensus	877		99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.65
PRK11028	330	6-phosphogluconolactonase; Provisional	99.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.48
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.43
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.4
COG3391	381	Uncharacterized conserved protein [Function unknow	99.39
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.37
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.36
KOG4659|consensus	1899		99.34
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.33
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.31
COG3391	381	Uncharacterized conserved protein [Function unknow	99.27
KOG4659|consensus	1899		99.21
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.09
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.05
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.04
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.04
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.04
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.02
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.98
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.94
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.88
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.81
KOG1520|consensus	376		98.69
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.67
KOG1520|consensus	376		98.65
KOG4499|consensus	310		98.64
PRK04043	419	tolB translocation protein TolB; Provisional	98.58
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.55
PRK04792	448	tolB translocation protein TolB; Provisional	98.49
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.49
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.44
PRK02889	427	tolB translocation protein TolB; Provisional	98.44
PRK00178	430	tolB translocation protein TolB; Provisional	98.41
COG4946	668	Uncharacterized protein related to the periplasmic	98.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.39
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.39
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.38
PRK05137	435	tolB translocation protein TolB; Provisional	98.37
PRK04922	433	tolB translocation protein TolB; Provisional	98.35
PRK05137	435	tolB translocation protein TolB; Provisional	98.28
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.27
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.27
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.23
PRK03629	429	tolB translocation protein TolB; Provisional	98.23
PRK03629	429	tolB translocation protein TolB; Provisional	98.22
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.18
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.17
PRK04792	448	tolB translocation protein TolB; Provisional	98.17
KOG4499|consensus	310		98.11
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.09
PRK04043	419	tolB translocation protein TolB; Provisional	98.06
PRK04922	433	tolB translocation protein TolB; Provisional	98.04
PRK00178	430	tolB translocation protein TolB; Provisional	97.98
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.91
PRK02889	427	tolB translocation protein TolB; Provisional	97.88
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.82
PRK01742	429	tolB translocation protein TolB; Provisional	97.8
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.8
PRK01029	428	tolB translocation protein TolB; Provisional	97.66
PRK01029	428	tolB translocation protein TolB; Provisional	97.65
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.62
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.61
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.59
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.36
PRK02888	635	nitrous-oxide reductase; Validated	97.35
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.33
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.29
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.27
PRK01742	429	tolB translocation protein TolB; Provisional	97.11
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.09
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.05
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	96.99
COG5276	370	Uncharacterized conserved protein [Function unknow	96.91
PRK02888	635	nitrous-oxide reductase; Validated	96.76
COG4946	668	Uncharacterized protein related to the periplasmic	96.59
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.48
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.47
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.19
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.73
KOG0292|consensus	1202		95.65
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.62
KOG0318|consensus	603		94.7
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	94.64
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.5
KOG1274|consensus	933		94.29
PF12662	24	cEGF: Complement Clr-like EGF-like	94.13
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.79
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.69
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.59
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.52
COG5276	370	Uncharacterized conserved protein [Function unknow	93.49
KOG0285|consensus	460		93.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	93.31
KOG0285|consensus	460		93.13
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.04
PTZ00421	493	coronin; Provisional	92.98
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	92.89
KOG0276|consensus	794		92.87
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.05
KOG4260|consensus	350		91.81
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.32
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	91.28
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.27
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	91.17
KOG0318|consensus	603		91.06
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	90.92
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	90.86
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.49
KOG0268|consensus	433		90.2
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	90.03
smart00284	255	OLF Olfactomedin-like domains.	90.01
KOG0268|consensus	433		90.01
KOG1446|consensus	311		89.51
KOG1274|consensus	933		87.72
KOG2139|consensus	445		87.43
PTZ00420	568	coronin; Provisional	86.76
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	85.85
KOG0279|consensus	315		85.74
KOG2110|consensus	391		85.61
KOG0291|consensus	893		85.42
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.29
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	84.46
smart00181	35	EGF Epidermal growth factor-like domain.	84.44
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	83.63
KOG3914|consensus	390		81.28
COG1520	370	FOG: WD40-like repeat [Function unknown]	80.02

>KOG1214|consensus

Probab=100.00  E-value=2.1e-46  Score=366.51  Aligned_cols=246  Identities=20%  Similarity=0.313  Sum_probs=223.5

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCcee-------eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcce
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEG-------LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMF  118 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~-------~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~  118 (440)
                      .-+|||+.+..     |...++++..+.       +.++.+-  |+|||||.++++|||+|.....|.++.|+|++.+. 
T Consensus       990 gt~LL~aqg~~-----I~~lplng~~~~K~~ak~~l~~p~~I--iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~t- 1061 (1289)
T KOG1214|consen  990 GTFLLYAQGQQ-----IGYLPLNGTRLQKDAAKTLLSLPGSI--IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPET- 1061 (1289)
T ss_pred             cceEEEeccce-----EEEeecCcchhchhhhhceEecccce--eeeeecccccceEEEeecCCCccccccccCCCCce-
Confidence            34799999999     999999988765       4444444  99999999999999999999999999999887554 


Q ss_pred             eeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC
Q psy14258        119 FTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA  193 (440)
Q Consensus       119 ~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~  193 (440)
                               ++.+++.+|+| ||||+.+|+||+    ++|+++.|||+.+++|+..+|-+|++|++|+.+|.||||||..
T Consensus      1062 ---------i~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnR 1132 (1289)
T KOG1214|consen 1062 ---------IVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNR 1132 (1289)
T ss_pred             ---------eecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccc
Confidence                     47889999999 999999999999    8999999999999999999999999999999999999999998


Q ss_pred             CCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEE
Q psy14258        194 TRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNL  273 (440)
Q Consensus       194 ~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~l  273 (440)
                      .+++|++.+|||+++++++.+++..||||++|+....|.|+|.++++++.+.++|..++++.++  +++||+|+-+++++
T Consensus      1133 enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~--LqYPF~itsy~~~f 1210 (1289)
T KOG1214|consen 1133 ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNN--LQYPFSITSYADHF 1210 (1289)
T ss_pred             cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhc--ccCceeeeeccccc
Confidence            8899999999999999999999999999999999999999999999999999999999999887  99999999999999


Q ss_pred             EEEecCCCeEEEEeccCCCceEEE--ecCCCCeEEEEec
Q psy14258        274 FVTSWRNQSIIRVNKFNSDDYETI--ANFSRPFAIHIYH  310 (440)
Q Consensus       274 y~td~~~~~i~~~~~~~g~~~~~~--~~~~~p~~~~v~~  310 (440)
                      |||||..++|..+++..++.....  .+.++.+||....
T Consensus      1211 Y~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~ 1249 (1289)
T KOG1214|consen 1211 YHTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVY 1249 (1289)
T ss_pred             eeeccccCceEEeeccccccccccccccccceEEEEecc
Confidence            999999999999999988776533  3444567776553

>KOG1215|consensus

Probab=100.00  E-value=3e-33  Score=302.27  Aligned_cols=396  Identities=23%  Similarity=0.371  Sum_probs=308.6

Q ss_pred             ccCCCCCCCCCCcc-cCCCceEEc-cCCeeeec---------ceeEEEEeecccceeeeEEEecCCCceeeeee-cccce
Q psy14258         15 DECLIDGSCDQTCT-NTHLSYTYT-DEGFSFQG---------VKTHLYETIEAFWEECFGPMDIEEWDEGLSFL-TFAQE   82 (440)
Q Consensus        15 ~~C~~~~~Cs~~C~-n~~~~~~C~-~~g~~l~~---------~~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~-~~~~~   82 (440)
                      ++|..++.|+|.|. +.++.+.|. ..||.+..         +++++++++..     |+++.++......++. ..+  
T Consensus       366 ~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~~~-----ir~~~~~~~~~~~p~~~~~~--  438 (877)
T KOG1215|consen  366 PCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNRHD-----IRRISLDCSDVSRPLEGIKN--  438 (877)
T ss_pred             cccccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecCcc-----ceecccCCCcceEEccCCcc--
Confidence            44556899999998 569999999 99998754         78999999999     9999998774444443 344  


Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEe
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCT  157 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~  157 (440)
                      +.++++|..++++||+|....+|.+...++.....          +...+.-.|.+ |+||+.+++||+    ..|.+.+
T Consensus       439 ~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~----------~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~  508 (877)
T KOG1215|consen  439 AVALDFDVLNNRIYWADLSDEKICRASQDGSSECE----------LCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVAD  508 (877)
T ss_pred             ceEEEEEecCCEEEEEeccCCeEeeeccCCCccce----------EeccCccccCcEEEEeccCCceecccCCceeEEEE
Confidence            99999999999999999999999998887765432          24567888999 999999999999    6899999


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY  237 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~  237 (440)
                      ++|+.+.+++...+..|+.+++||..|.|||+||+.. ++|.|+.|||+.+..++..++.+|+||++|...+++||+|..
T Consensus       509 ~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~-~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~  587 (877)
T KOG1215|consen  509 LDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQP-PRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAK  587 (877)
T ss_pred             ccCCceeEEEecCCCCccceeeccccCeeEEecCCCC-chhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEccc
Confidence            9999988999888899999999999999999999974 699999999999999999889999999999999999999999


Q ss_pred             CC-cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCc-eEEEecCCCCeEEEEe-ccCCC
Q psy14258        238 LD-FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD-YETIANFSRPFAIHIY-HRQKQ  314 (440)
Q Consensus       238 ~~-~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~-~~~~~~~~~p~~~~v~-~~~~q  314 (440)
                      .. .|.+++.+|..++ +.....+.+|++++++++++||+||....+.+.++..+.. ..+......|..+.++ +...|
T Consensus       588 ~~~~i~~~~~~g~~r~-~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (877)
T KOG1215|consen  588 LDYTIESANMDGQNRR-VVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSR  666 (877)
T ss_pred             CCcceeeeecCCCceE-EeccccCCCceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccC
Confidence            99 8999999999998 3333348999999999999999999999999998888766 3445566678777766 66666


Q ss_pred             CCCCCC-------ceeEEeecCCcc---EE--EEEEcCCCC-CC---------ceeeeeecCC-----CCceEEEEEcCC
Q psy14258        315 PDALKP-------STFLLYAKGKPA---II--KGLTFKRDG-TT---------EQAIMPITDL-----KRPSVIDYHEKE  367 (440)
Q Consensus       315 p~~~~~-------~~~l~~~~~~~~---~I--~~i~~~~~~-~~---------~~~~~~~~~~-----~~p~~l~~d~~~  367 (440)
                      |...++       ...|++......   +-  ..+..++.. ..         ......+...     ..|...- +..+
T Consensus       667 ~~~~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  745 (877)
T KOG1215|consen  667 PTGVNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDGKSCSSPEGYLLITSRTGIPCISLDSELSPDQPLEDG-DTID  745 (877)
T ss_pred             CCCCCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCCCeecCcccccccccccccceeecCcccCCCcccCCC-cccc
Confidence            655421       145554443211   00  011111110 00         0000000000     0011111 6667


Q ss_pred             CEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        368 EYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       368 ~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +..+|++...+...+...++.....++..+...++++|+|+....|||+....+.+.+..+++
T Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  808 (877)
T KOG1215|consen  746 RLEYWTDVRVGVAAVSSQNCAPGYDLVGEGEPPPEGSAVDEAEDTLYWTCSATSFIEVSGLDG  808 (877)
T ss_pred             cceecccccceeeEEEecCCCCccccccccCCCCCCceeehhhcceEEEeecccEEEEEEEee
Confidence            889999888888877777765544455667789999999999999999999999999999988

>KOG1214|consensus

Probab=99.93  E-value=3.8e-25  Score=217.88  Aligned_cols=233  Identities=21%  Similarity=0.309  Sum_probs=194.4

Q ss_pred             cCCcEEEe--ceEEEEecCCceEE-----EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC
Q psy14258        143 VTHKIVYP--EAIYFCTHYMEHCM-----IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK  215 (440)
Q Consensus       143 ~~~~lY~~--~~I~~~~~dg~~~~-----~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~  215 (440)
                      .+.+|.++  ..|....++|....     +++...-.-|-||++|-...++||||...  +.|.|++|.|...++++...
T Consensus       989 ~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g--~SI~rasL~G~Ep~ti~n~~ 1066 (1289)
T KOG1214|consen  989 VGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAG--RSISRASLEGAEPETIVNSG 1066 (1289)
T ss_pred             CcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCC--CccccccccCCCCceeeccc
Confidence            45567778  89999999985432     33333445689999999999999999987  59999999999999999999


Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCc
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDD  293 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~  293 (440)
                      +..|.|||||....++||+|+..++|+.+.+||+.+++++... +-+|.+|.++  .++||||||....           
T Consensus      1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~td-LVNPR~iv~D~~rgnLYwtDWnRen----------- 1134 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTD-LVNPRAIVVDPIRGNLYWTDWNREN----------- 1134 (1289)
T ss_pred             CCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeec-ccCcceEEeecccCceeeccccccC-----------
Confidence            9999999999999999999999999999999999999998743 8899999986  6799999995321           


Q ss_pred             eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEE
Q psy14258        294 YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       294 ~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~  373 (440)
                                                            -.|.+.+|||+   +..++.-.++.-|.||.||+....|.|.
T Consensus      1135 --------------------------------------PkIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWv 1173 (1289)
T KOG1214|consen 1135 --------------------------------------PKIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWV 1173 (1289)
T ss_pred             --------------------------------------CcceeeccCCc---cceEEeecccCCCCCceeCcccceeeEE
Confidence                                                  23444455555   1112233457789999999999999999


Q ss_pred             ECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCee
Q psy14258        374 ELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSI  433 (440)
Q Consensus       374 d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~  433 (440)
                      |.+++++.-...+|++|.++.. +|+.|.+|.-+  +.++||||...++|..+.+-+.+.
T Consensus      1174 DAGt~rleC~~p~g~gRR~i~~-~LqYPF~itsy--~~~fY~TDWk~n~vvsv~~~~~~~ 1230 (1289)
T KOG1214|consen 1174 DAGTKRLECTLPDGTGRRVIQN-NLQYPFSITSY--ADHFYHTDWKRNGVVSVNKHSGQF 1230 (1289)
T ss_pred             ecCCcceeEecCCCCcchhhhh-cccCceeeeec--cccceeeccccCceEEeecccccc
Confidence            9999999999999999988765 89999999988  778999999999999998876443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.88  E-value=1.1e-19  Score=197.52  Aligned_cols=250  Identities=16%  Similarity=0.203  Sum_probs=187.7

Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-------------CccCceEEEEeCCCCEEEEE
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH-------------KIVYPYGVTVDFPTKHVYWV  234 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-------------~~~~P~gl~vD~~~~~ly~~  234 (440)
                      .+.+..|.++++|+.+|.||++|.+.  ++|.+.+++|.....+...             .+..|.||++|+.++.||++
T Consensus       564 ~s~l~~P~gvavd~~~g~lyVaDs~n--~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa  641 (1057)
T PLN02919        564 TSPLKFPGKLAIDLLNNRLFISDSNH--NRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA  641 (1057)
T ss_pred             cccCCCCceEEEECCCCeEEEEECCC--CeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence            45778999999999899999999887  5999999998754433321             25579999999888899999


Q ss_pred             eCCCCcEEEEEccCCCcEEEec-C--------------CccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        235 DTYLDFIDRINYDGTDRKTIRK-G--------------FPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       235 d~~~~~i~~~~~dG~~~~~i~~-~--------------~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      |..++.|+++++.+...+++.. +              ..+.+|.++++..  +.||++|..++.|++++..++......
T Consensus       642 Dt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~  721 (1057)
T PLN02919        642 DTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS  721 (1057)
T ss_pred             eCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence            9999999999987776666532 1              1256899999984  599999999999999998665432211


Q ss_pred             e---------------cCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCc----e-----e----
Q psy14258        298 A---------------NFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTE----Q-----A----  348 (440)
Q Consensus       298 ~---------------~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~----~-----~----  348 (440)
                      .               .+..|.++.+.          |+ ..||+++...++|+++++++.+...    +     .    
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavs----------pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~f  791 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLS----------PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKF  791 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEe----------CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccc
Confidence            1               12235555444          34 5699999988999999987541100    0     0    


Q ss_pred             -----eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEEC-------------CCCCeeeEEEecCC
Q psy14258        349 -----IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT-------------GIYNVEGMAVDWMA  410 (440)
Q Consensus       349 -----~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~-------------~~~~~~glAvD~~~  410 (440)
                           ......+..|.++++|+.+ .+|++|..+++|.++++++....++...             .+..|.|||+|.. 
T Consensus       792 G~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d-  869 (1057)
T PLN02919        792 GDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN-  869 (1057)
T ss_pred             cCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC-
Confidence                 0001124579999999865 5999999999999999987555544432             3457999999974 


Q ss_pred             CcEEEEeCCCCeEEEEEeCCC
Q psy14258        411 NNLYWTDAGIGTINVAKISDF  431 (440)
Q Consensus       411 ~~lYwtd~~~~~I~~~~~~g~  431 (440)
                      ++||++|..+++|.+++++.+
T Consensus       870 G~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        870 GRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCEEEEECCCCEEEEEECCCC
Confidence            579999999999999999873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.87  E-value=2e-19  Score=195.43  Aligned_cols=277  Identities=10%  Similarity=0.115  Sum_probs=197.1

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecccc---ccceeeccccccce-eeeecCCcEEEe----ceEE
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA---TRPMLERSLLDGTE-RFPMVTHKIVYP----EAIY  154 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~  154 (440)
                      |.++++|..++.||++|..+++|++++.++.....+.+.+..   ....-...+..|.| |+|..++.|||+    ++|.
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            778999998899999999999999998876543332211100   00011235778999 999988889999    6899


Q ss_pred             EEecCCceEEEEEcC----------------CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe-----
Q psy14258        155 FCTHYMEHCMIAIDL----------------NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT-----  213 (440)
Q Consensus       155 ~~~~dg~~~~~~~~~----------------~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~-----  213 (440)
                      +.++.+...+++...                .+..|.+|++||.+|.||+++.+.  ++|++.+..+.....+..     
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--HQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--CeEEEEECCCCeEEEEecCCccc
Confidence            999887776665431                156899999999899999999887  489888875433222211     


Q ss_pred             ---------cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC--------------------CccCcee
Q psy14258        214 ---------HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG--------------------FPVQNLY  264 (440)
Q Consensus       214 ---------~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~--------------------~~~~~p~  264 (440)
                               ..+..|+||++++.+++||++|...++|..+++++.....+..+                    ..+.+|.
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                     12568999999988889999999999999999875444332210                    1256899


Q ss_pred             eeeEecC-EEEEEecCCCeEEEEeccCCCceEEEe--------------cCCCCeEEEEeccCCCCCCCCCceeEEeecC
Q psy14258        265 DITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIA--------------NFSRPFAIHIYHRQKQPDALKPSTFLLYAKG  329 (440)
Q Consensus       265 gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~--------------~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~  329 (440)
                      |+++..+ .||++|+.+++|.+++..++....+..              .+..|.++.+.          +++.||++|.
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd----------~dG~lyVaDt  877 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG----------ENGRLFVADT  877 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe----------CCCCEEEEEC
Confidence            9999865 899999999999999987665443332              12246666555          4667999999


Q ss_pred             CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEE
Q psy14258        330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       330 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~  373 (440)
                      .+++|+.++++.........+.+.+...|..+  +...+++|.+
T Consensus       878 ~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~  919 (1057)
T PLN02919        878 NNSLIRYLDLNKGEAAEILTLELKGVQPPRPK--SKSLKRLRRR  919 (1057)
T ss_pred             CCCEEEEEECCCCccceeEeeccccccCCCCc--ccchhhhhhc
Confidence            99999999997762212224444555555533  3334667766

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.81  E-value=3.8e-17  Score=151.31  Aligned_cols=210  Identities=17%  Similarity=0.207  Sum_probs=159.6

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe--ceEEEEecC
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHY  159 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~d  159 (440)
                      +.|+.+|..++.|||+|...++|+++..++.....           +  ....|.| +++...+.||++  ..+.+.+++
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-----------~--~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~   68 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-----------I--DLPGPNGMAFDRPDGRLYVADSGGIAVVDPD   68 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----------E--ESSSEEEEEEECTTSEEEEEETTCEEEEETT
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-----------E--ecCCCceEEEEccCCEEEEEEcCceEEEecC
Confidence            67899999899999999999999998887543221           1  2334999 999767889999  667777887


Q ss_pred             CceEEEEEcC-----CCCCceEEEEcCCCCeEEEEEcCCCC------CcEEEEeCCCCCceeEEecCccCceEEEEeCCC
Q psy14258        160 MEHCMIAIDL-----NLSKPRGIALDPTSGYMFFTKWGATR------PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT  228 (440)
Q Consensus       160 g~~~~~~~~~-----~~~~P~~iavd~~~g~lywtd~~~~~------~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~  228 (440)
                      ....+.+...     .+..|.++++|+ .|.||+|+.....      ++|+|.+.+|.  ...+...+..||||++++.+
T Consensus        69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~--~~~~~~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   69 TGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK--VTVVADGLGFPNGIAFSPDG  145 (246)
T ss_dssp             TTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE--EEEEEEEESSEEEEEEETTS
T ss_pred             CCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe--EEEEecCcccccceEECCcc
Confidence            7766666653     467899999999 6899999976531      46999999944  33444568899999999999


Q ss_pred             CEEEEEeCCCCcEEEEEccCCC-----cEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEe-cC
Q psy14258        229 KHVYWVDTYLDFIDRINYDGTD-----RKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIA-NF  300 (440)
Q Consensus       229 ~~ly~~d~~~~~i~~~~~dG~~-----~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~-~~  300 (440)
                      +.||++|...++|.+++++...     ++.+.. ......|-|++++.+ +||++++..++|.++++. |+....+. ..
T Consensus       146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~  224 (246)
T PF08450_consen  146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV  224 (246)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred             hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence            9999999999999999997432     344433 211236999999865 999999999999999996 77666443 44


Q ss_pred             CCCeEEEEe
Q psy14258        301 SRPFAIHIY  309 (440)
Q Consensus       301 ~~p~~~~v~  309 (440)
                      .+|..+++-
T Consensus       225 ~~~t~~~fg  233 (246)
T PF08450_consen  225 PRPTNCAFG  233 (246)
T ss_dssp             SSEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            688888774

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.78  E-value=3.6e-16  Score=144.74  Aligned_cols=226  Identities=18%  Similarity=0.138  Sum_probs=169.1

Q ss_pred             ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE
Q psy14258        174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT  253 (440)
Q Consensus       174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~  253 (440)
                      |+|++.|+..|.|||+|...  ++|.+.++++...+.+..   ..|.|++++..+++||+++...  +..+++.....+.
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~--~~i~~~~~~~~~~~~~~~---~~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~   74 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPG--GRIYRVDPDTGEVEVIDL---PGPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEEES---SSEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEE
T ss_pred             CcceEEECCCCEEEEEEcCC--CEEEEEECCCCeEEEEec---CCCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEE
Confidence            78999999999999999876  599999999876554332   2399999997779999999644  4445876666665


Q ss_pred             EecC---C-ccCceeeeeEecC-EEEEEecCC--------CeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCC
Q psy14258        254 IRKG---F-PVQNLYDITVFEN-NLFVTSWRN--------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKP  320 (440)
Q Consensus       254 i~~~---~-~~~~p~gl~~~~~-~ly~td~~~--------~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~  320 (440)
                      +...   . .+..|..++++.+ .||+++...        +.|++++.. ++...+...+..|.+|.+..         .
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~---------d  144 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP---------D  144 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET---------T
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC---------c
Confidence            5542   2 4778999999876 899999754        569999986 55555667788899998883         2


Q ss_pred             ceeEEeecCCccEEEEEEcCCCCC-Cc--eeeeeecCC-CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEEC
Q psy14258        321 STFLLYAKGKPAIIKGLTFKRDGT-TE--QAIMPITDL-KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT  396 (440)
Q Consensus       321 ~~~l~~~~~~~~~I~~i~~~~~~~-~~--~~~~~~~~~-~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~  396 (440)
                      ...||++++..++|++++++..+. ..  .....+... ..|.|+++|.. +.||+++...+.|.+++++|.-...+. .
T Consensus       145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~G~~~~~i~-~  222 (246)
T PF08450_consen  145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPDGKLLREIE-L  222 (246)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETTSCEEEEEE--
T ss_pred             chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCCccEEEEEc-C
Confidence            357999999999999999986522 11  122333333 25899999985 569999999999999999986555444 3


Q ss_pred             CCCCeeeEEEe-cCCCcEEEEeC
Q psy14258        397 GIYNVEGMAVD-WMANNLYWTDA  418 (440)
Q Consensus       397 ~~~~~~glAvD-~~~~~lYwtd~  418 (440)
                      ....|..+|+. ...+.||+|.+
T Consensus       223 p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  223 PVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCCEEEEEEECCCCCEEEEEeC
Confidence            46799999993 45678999964

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1215|consensus

Probab=99.71  E-value=1.5e-15  Score=164.88  Aligned_cols=278  Identities=24%  Similarity=0.355  Sum_probs=215.8

Q ss_pred             cccce-eeeecCCcEEEe-c-eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCcee
Q psy14258        134 LDGTE-RFPMVTHKIVYP-E-AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP  210 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~-~-~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~  210 (440)
                      .+..+ ..|...+.+||+ . ++++...+|+...+......+.|.+++..|..|++||+++....+.+...++++..+..
T Consensus       198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~  277 (877)
T KOG1215|consen  198 QHDCADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQK  277 (877)
T ss_pred             ccccccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceE
Confidence            34555 667788889999 3 59999999986666666778999999999999999999988655689999999999999


Q ss_pred             EEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccC
Q psy14258        211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFN  290 (440)
Q Consensus       211 l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~  290 (440)
                      +....+..|.|.+.+.-...+||         ..++|+...+ |.... +.++          ||+++.+..+.+..+.+
T Consensus       278 ~~~g~~d~pdg~de~~~~~~~~~---------~~~~d~~~~~-i~~~~-~~~~----------~~~~~~~~~~~~~~~~~  336 (877)
T KOG1215|consen  278 LCDGDLDCPDGLDEDYCKKKLYW---------SMNVDGSGRR-ILLSK-LCHG----------YWTDGLNECAERVLKCS  336 (877)
T ss_pred             EecCccCCCCcccccccccceee---------eeecccCCce-eeecc-cCcc----------ccccccccchhhccccc
Confidence            88888888999999999999999         6778888877 65532 4444          58887766666655555


Q ss_pred             CCceEEE-ecCCCCeEEEEeccCCC----CCCC------------------------------------CCceeEEeecC
Q psy14258        291 SDDYETI-ANFSRPFAIHIYHRQKQ----PDAL------------------------------------KPSTFLLYAKG  329 (440)
Q Consensus       291 g~~~~~~-~~~~~p~~~~v~~~~~q----p~~~------------------------------------~~~~~l~~~~~  329 (440)
                      +....+. .......+...++....    |...                                    .+..||+++..
T Consensus       337 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~  416 (877)
T KOG1215|consen  337 HKCPDVSVGPRCDCMGAKVLPLGARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNR  416 (877)
T ss_pred             CCCCccccCCcccCCccceecccccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecC
Confidence            4433221 11111111111111100    0000                                    13578888877


Q ss_pred             CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258        330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       330 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~  409 (440)
                        ..|+++.++..    +...|+..+..+.++++|..++++||+|.....|.+...++.....+...+...++|||+||+
T Consensus       417 --~~ir~~~~~~~----~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~  490 (877)
T KOG1215|consen  417 --HDIRRISLDCS----DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWI  490 (877)
T ss_pred             --ccceecccCCC----cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEec
Confidence              88999988776    567788877888999999999999999999999999999998777777789999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEEeCCCeeeEEeee
Q psy14258        410 ANNLYWTDAGIGTINVAKISDFSIRKVLYK  439 (440)
Q Consensus       410 ~~~lYwtd~~~~~I~~~~~~g~~~~~~l~~  439 (440)
                      .+++||+|.+...|++.+++| +.+++|+.
T Consensus       491 ~~~~y~tDe~~~~i~v~~~~g-~~~~vl~~  519 (877)
T KOG1215|consen  491 GDNIYWTDEGNCLIEVADLDG-SSRKVLVS  519 (877)
T ss_pred             cCCceecccCCceeEEEEccC-CceeEEEe
Confidence            999999999999999999999 66999875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=7e-13  Score=128.29  Aligned_cols=272  Identities=10%  Similarity=0.064  Sum_probs=181.2

Q ss_pred             cEEEe----ceEEEEecC--CceEE-EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec--Cc
Q psy14258        146 KIVYP----EAIYFCTHY--MEHCM-IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH--KI  216 (440)
Q Consensus       146 ~lY~~----~~I~~~~~d--g~~~~-~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~--~~  216 (440)
                      .+|++    +.|.+.+++  |+... ..+ .....|..|+++|...+||.+....  ..|...+.++.........  ..
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~~g~l~~~~~~~~~   79 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPE--FRVLSYRIADDGALTFAAESPLP   79 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCC--CcEEEEEECCCCceEEeeeecCC
Confidence            47887    678888775  33221 111 1236799999999888899998754  5787777664333222221  23


Q ss_pred             cCceEEEEeCCCCEEEEEeCCCCcEEEEEcc--CCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCC
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYD--GTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d--G~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~  292 (440)
                      ..|.++++++.+++||.+....+.|..++++  |...+.+.......+|.++++..+  ++|+++...+.|..++..+..
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            4799999999999999999888888888775  322222221112467888888744  999999999998888775432


Q ss_pred             ceE-------EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-------CCCCc
Q psy14258        293 DYE-------TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-------DLKRP  358 (440)
Q Consensus       293 ~~~-------~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-------~~~~p  358 (440)
                      ...       .+.....|.++.+..         ...+||+++...+.|..++++.....-.....+.       +-..|
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~p---------dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHP---------NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECC---------CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence            211       111233577765541         1368889887778998888874201111111111       11234


Q ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEecCCCC--eEEEE--ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        359 SVIDYHEKEEYIYYAELTSYVIERRKMFGRG--KEVVI--DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       359 ~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~--~~~~~--~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .++++++.++++|+++...++|..++++...  .+.+-  ..+ ..|.++++++.++.||.++...++|.+++++.
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            5799999999999999888999888875322  22221  122 47999999999999999999899999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.65  E-value=2e-12  Score=125.59  Aligned_cols=252  Identities=12%  Similarity=0.130  Sum_probs=176.4

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCC-CCCcEEEEeCCCC-CceeEEec---CccCceEEEEeCCCCEEEEEeCCCCcEEEE
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGA-TRPMLERSLLDGT-ERFPMVTH---KIVYPYGVTVDFPTKHVYWVDTYLDFIDRI  244 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~-~~~~I~r~~~dG~-~~~~l~~~---~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~  244 (440)
                      ...+|.-|++||..++||.++... ..+.|.....+.. ...+++..   .-..|..+++|+.+..||+++...+.+..+
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence            567899999999999999999863 2278888877764 33333332   346799999999999999999999999888


Q ss_pred             EccC--CCcEE--Eec---------CCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCc-eE---EE--ecCCCC
Q psy14258        245 NYDG--TDRKT--IRK---------GFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDD-YE---TI--ANFSRP  303 (440)
Q Consensus       245 ~~dG--~~~~~--i~~---------~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~-~~---~~--~~~~~p  303 (440)
                      +++.  .-...  +..         .+...||+.+.+..+  ++|++|.+.++|+.++...... ..   .+  .....|
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP  194 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP  194 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence            8764  22222  111         123578999988744  9999999999999888755441 21   12  233368


Q ss_pred             eEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC-CCCcee-e---eee--cCCCCceEEEEEcCCCEEEEEECC
Q psy14258        304 FAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD-GTTEQA-I---MPI--TDLKRPSVIDYHEKEEYIYYAELT  376 (440)
Q Consensus       304 ~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~-~~~~~~-~---~~~--~~~~~p~~l~~d~~~~~vy~~d~~  376 (440)
                      .++.+..         ...++|++....+.|..+.++.. +..... .   +|.  .+...|.+|++++++++||+++..
T Consensus       195 Rh~~f~p---------dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~  265 (345)
T PF10282_consen  195 RHLAFSP---------DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG  265 (345)
T ss_dssp             EEEEE-T---------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred             cEEEEcC---------CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence            8886551         13688888887789998888833 111110 1   111  111268899999999999999999


Q ss_pred             CCeEEEEecCCC--CeEEE--EECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        377 SYVIERRKMFGR--GKEVV--IDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       377 ~~~I~r~~~~g~--~~~~~--~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .++|..++++..  ..+.+  +..+-..|.+|++|+.++.||+++...+.|.+++.|.
T Consensus       266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            999999998643  22222  2334467999999999999999999999999999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.56  E-value=5.5e-11  Score=115.07  Aligned_cols=292  Identities=12%  Similarity=0.046  Sum_probs=185.0

Q ss_pred             cEEEEEEcCCCCceeEEeCCC-CCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCce-EEE
Q psy14258         93 HCMIAIDLNLSKPRGIALDPT-SGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEH-CMI  165 (440)
Q Consensus        93 ~~ly~~d~~~~~I~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~-~~~  165 (440)
                      .++|.++...+.|...+++.. .+..+         ........|.. ++++.++.||++    +.|...+.+... ...
T Consensus         2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~---------~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~   72 (330)
T PRK11028          2 QIVYIASPESQQIHVWNLNHEGALTLL---------QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF   72 (330)
T ss_pred             eEEEEEcCCCCCEEEEEECCCCceeee---------eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE
Confidence            468999888888888887421 11111         11123457888 999999999998    677776665321 111


Q ss_pred             EEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC--CCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcE
Q psy14258        166 AID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD--GTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFI  241 (440)
Q Consensus       166 ~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d--G~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i  241 (440)
                      +-. .....|.+|+++|...+||.+....  ++|...+++  |...+.+.. .....|.++++++.+++||+++...+.|
T Consensus        73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~~~--~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v  150 (330)
T PRK11028         73 AAESPLPGSPTHISTDHQGRFLFSASYNA--NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRI  150 (330)
T ss_pred             eeeecCCCCceEEEECCCCCEEEEEEcCC--CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEE
Confidence            111 1235799999999888899998765  577777665  433222211 2345789999999999999999999999


Q ss_pred             EEEEccCCC-cE-----EEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCC-CceEEEecCC-CC--------
Q psy14258        242 DRINYDGTD-RK-----TIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNS-DDYETIANFS-RP--------  303 (440)
Q Consensus       242 ~~~~~dG~~-~~-----~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g-~~~~~~~~~~-~p--------  303 (440)
                      ..++++... ..     .+... .-..|.++++..+  ++|.++...+.|..++...+ ...+.+.... .|        
T Consensus       151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~  229 (330)
T PRK11028        151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW  229 (330)
T ss_pred             EEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence            999986421 11     11111 1346889998766  99999988888877765421 1222222111 11        


Q ss_pred             -eEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEE
Q psy14258        304 -FAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIE  381 (440)
Q Consensus       304 -~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~  381 (440)
                       .++.+.          |+ .+||+++...+.|..++++..+........+.....|.++++++.+++||+++...++|.
T Consensus       230 ~~~i~~~----------pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~  299 (330)
T PRK11028        230 AADIHIT----------PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHIS  299 (330)
T ss_pred             ceeEEEC----------CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEE
Confidence             122221          33 689998776688888887654211111112222357899999999999999998889888


Q ss_pred             EEecCCC--CeEEEEE-CCCCCeeeEEE
Q psy14258        382 RRKMFGR--GKEVVID-TGIYNVEGMAV  406 (440)
Q Consensus       382 r~~~~g~--~~~~~~~-~~~~~~~glAv  406 (440)
                      .++++..  ..+.+-. .-...|.+++|
T Consensus       300 v~~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        300 VYEIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             EEEEcCCCCcEEEccccccCCCceEEEE
Confidence            8877632  2222211 11256888887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=2.3e-10  Score=111.21  Aligned_cols=244  Identities=16%  Similarity=0.141  Sum_probs=167.9

Q ss_pred             ccccccce-eeeecCCcEEEe-------ceEEEEecCCc--eEEEEEc--CCCCCceEEEEcCCCCeEEEEEcCCCCCcE
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP-------EAIYFCTHYME--HCMIAID--LNLSKPRGIALDPTSGYMFFTKWGATRPML  198 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~-------~~I~~~~~dg~--~~~~~~~--~~~~~P~~iavd~~~g~lywtd~~~~~~~I  198 (440)
                      ....+|.- ++|+.++.||.+       +.|..+..+..  ..+.+-.  ..-..|..|++||..++||.++.+.  +.|
T Consensus        34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~--g~v  111 (345)
T PF10282_consen   34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG--GSV  111 (345)
T ss_dssp             EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--TEE
T ss_pred             cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--CeE
Confidence            45678999 999999999999       26766665542  3322222  2446899999999999999999876  578


Q ss_pred             EEEeCCC--CCcee--EEe----------cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC--cEEEe--cCCcc
Q psy14258        199 ERSLLDG--TERFP--MVT----------HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD--RKTIR--KGFPV  260 (440)
Q Consensus       199 ~r~~~dG--~~~~~--l~~----------~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~--~~~i~--~~~~~  260 (440)
                      ....++-  .....  ++.          ....+|..+.+++.++.||++|.+.++|..++++...  .....  .-..-
T Consensus       112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred             EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence            7777764  33322  111          1246789999999999999999999999999997655  32211  11124


Q ss_pred             CceeeeeEecC--EEEEEecCCCeEEEEecc--CCCceE--EEecCC-------CCeEEEEeccCCCCCCCCCc-eeEEe
Q psy14258        261 QNLYDITVFEN--NLFVTSWRNQSIIRVNKF--NSDDYE--TIANFS-------RPFAIHIYHRQKQPDALKPS-TFLLY  326 (440)
Q Consensus       261 ~~p~gl~~~~~--~ly~td~~~~~i~~~~~~--~g~~~~--~~~~~~-------~p~~~~v~~~~~qp~~~~~~-~~l~~  326 (440)
                      ..|..+++..+  ++|++...++.|..++..  +|+...  .+....       .|.+|++.          |+ .|||+
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is----------pdg~~lyv  261 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS----------PDGRFLYV  261 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-----------TTSSEEEE
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe----------cCCCEEEE
Confidence            67999999765  999999989998888766  342221  222221       24556554          33 78999


Q ss_pred             ecCCccEEEEEEcCCC-CCCcee-eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        327 AKGKPAIIKGLTFKRD-GTTEQA-IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       327 ~~~~~~~I~~i~~~~~-~~~~~~-~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      ++...+.|..+.++.. +..... .++. +...|+++++++.+++||+++..++.|..+++|.
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            9998889998998654 122211 2222 3456999999999999999999999998887763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=1.1e-11  Score=116.78  Aligned_cols=220  Identities=15%  Similarity=0.191  Sum_probs=147.2

Q ss_pred             EEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258        166 AIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN  245 (440)
Q Consensus       166 ~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~  245 (440)
                      ++.......+|.+-++..+.|||+|...  ++|.|.+.+....+ .....-..+++..+| ..++|..++.+...+..  
T Consensus        19 ~~~~~~~~gEgP~w~~~~~~L~w~DI~~--~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--   92 (307)
T COG3386          19 LLDKGATLGEGPVWDPDRGALLWVDILG--GRIHRLDPETGKKR-VFPSPGGFSSGALID-AGGRLIACEHGVRLLDP--   92 (307)
T ss_pred             EeecccccccCccCcCCCCEEEEEeCCC--CeEEEecCCcCceE-EEECCCCcccceeec-CCCeEEEEccccEEEec--
Confidence            3444556788889999999999999987  59999999743333 333444558899998 77888888765433322  


Q ss_pred             ccCCCcEEEec---CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc
Q psy14258        246 YDGTDRKTIRK---GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS  321 (440)
Q Consensus       246 ~dG~~~~~i~~---~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~  321 (440)
                      -.|..++.+..   +.....|+...++.+ .+|+++.....       .+..                  ..+       
T Consensus        93 ~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~-------~~~~------------------~~~-------  140 (307)
T COG3386          93 DTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFD-------LGKS------------------EER-------  140 (307)
T ss_pred             cCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccc-------cCcc------------------ccC-------
Confidence            22333244433   334677888888865 88888865300       0000                  000       


Q ss_pred             eeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecC---CC--CeEEEEE
Q psy14258        322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMF---GR--GKEVVID  395 (440)
Q Consensus       322 ~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~---g~--~~~~~~~  395 (440)
                              ..+.+++++.++.     ....+.+ +..|.||+++++++.+|++|+..++|+|..++   |.  ++...+.
T Consensus       141 --------~~G~lyr~~p~g~-----~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~  207 (307)
T COG3386         141 --------PTGSLYRVDPDGG-----VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD  207 (307)
T ss_pred             --------CcceEEEEcCCCC-----EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE
Confidence                    1146666776444     2333444 77899999999999999999999999999987   31  2332333


Q ss_pred             --CCCCCeeeEEEecCCCcEE-EEeCCCCeEEEEEeCCCeeeEEe
Q psy14258        396 --TGIYNVEGMAVDWMANNLY-WTDAGIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       396 --~~~~~~~glAvD~~~~~lY-wtd~~~~~I~~~~~~g~~~~~~l  437 (440)
                        ..-+.|+|+++|. .++|| ++..+...|.+++++|+...++.
T Consensus       208 ~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pdG~l~~~i~  251 (307)
T COG3386         208 FDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPDGKLLGEIK  251 (307)
T ss_pred             ccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCCCcEEEEEE
Confidence              3347899999995 66677 44444459999999996655544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.7e-09  Score=99.78  Aligned_cols=275  Identities=14%  Similarity=0.132  Sum_probs=188.1

Q ss_pred             ceEEEEecCCceEE---EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC-CceeEEec---CccCceEEE
Q psy14258        151 EAIYFCTHYMEHCM---IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT-ERFPMVTH---KIVYPYGVT  223 (440)
Q Consensus       151 ~~I~~~~~dg~~~~---~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~-~~~~l~~~---~~~~P~gl~  223 (440)
                      ..|.+.++++..-+   ......+.+|.=|+++|....||........+.|.....|.. ++.+++..   ....|.-++
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvs   95 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVS   95 (346)
T ss_pred             CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEE
Confidence            45788887743322   222246789999999998889999987644478999998875 66666653   234569999


Q ss_pred             EeCCCCEEEEEeCCCCcEEEEEc--cCCCcEEE---ec-CC------cc--CceeeeeEecCEEEEEecCCCeEEEEecc
Q psy14258        224 VDFPTKHVYWVDTYLDFIDRINY--DGTDRKTI---RK-GF------PV--QNLYDITVFENNLFVTSWRNQSIIRVNKF  289 (440)
Q Consensus       224 vD~~~~~ly~~d~~~~~i~~~~~--dG~~~~~i---~~-~~------~~--~~p~gl~~~~~~ly~td~~~~~i~~~~~~  289 (440)
                      +|+.++.||.+..+.+.|.+..+  +|.-...+   .. +.      .-  .|+..++-++++|...|.+..+|...+..
T Consensus        96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~  175 (346)
T COG2706          96 VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD  175 (346)
T ss_pred             ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc
Confidence            99999999999999998877765  45432221   11 11      01  23445555677999999999999988877


Q ss_pred             CCCceE----EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC-CCCce----eeeeec--CCCCc
Q psy14258        290 NSDDYE----TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD-GTTEQ----AIMPIT--DLKRP  358 (440)
Q Consensus       290 ~g~~~~----~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~-~~~~~----~~~~~~--~~~~p  358 (440)
                      .|+...    .+.....|..| +|||..        .+.|+....++.|.....+.. +.-++    ..+|-.  +-...
T Consensus       176 dg~L~~~~~~~v~~G~GPRHi-~FHpn~--------k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~  246 (346)
T COG2706         176 DGKLTPADPAEVKPGAGPRHI-VFHPNG--------KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA  246 (346)
T ss_pred             cCccccccccccCCCCCcceE-EEcCCC--------cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence            665433    22333357777 566433        466777666788877777764 11111    112211  11234


Q ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEecC--CCCeEEEE--ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeee
Q psy14258        359 SVIDYHEKEEYIYYAELTSYVIERRKMF--GRGKEVVI--DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIR  434 (440)
Q Consensus       359 ~~l~~d~~~~~vy~~d~~~~~I~r~~~~--g~~~~~~~--~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~  434 (440)
                      .+|.+.+.+++||.+|.+.++|..+.++  |+..+.+.  ..+...|.+..++.-++.|+.+...++.|.+++.+.++.+
T Consensus       247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR  326 (346)
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence            4788999999999999988887666654  44333332  2444679999999999999999999999999999986544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.43  E-value=5.6e-11  Score=116.37  Aligned_cols=242  Identities=17%  Similarity=0.159  Sum_probs=158.2

Q ss_pred             cccccce-eeeecCCcEEEe----------------ceEEEEec---CCceE-EEEEcCCCCCceEEEEcCCCCeEEEEE
Q psy14258        132 SLLDGTE-RFPMVTHKIVYP----------------EAIYFCTH---YMEHC-MIAIDLNLSKPRGIALDPTSGYMFFTK  190 (440)
Q Consensus       132 ~~~~p~~-avD~~~~~lY~~----------------~~I~~~~~---dg~~~-~~~~~~~~~~P~~iavd~~~g~lywtd  190 (440)
                      .+.+|.+ |+|..++ ||++                ++|.+...   ||..- ..++...+..|.||++.+ .| ||+++
T Consensus        12 ~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~   88 (367)
T TIGR02604        12 LLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVAT   88 (367)
T ss_pred             ccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeC
Confidence            3789999 9997765 9998                17877743   45442 345566889999999987 56 99987


Q ss_pred             cCCCCCcEEEE-eCCCC-----CceeEEec---C----ccCceEEEEeCCCCEEEEEeCCC-------------------
Q psy14258        191 WGATRPMLERS-LLDGT-----ERFPMVTH---K----IVYPYGVTVDFPTKHVYWVDTYL-------------------  238 (440)
Q Consensus       191 ~~~~~~~I~r~-~~dG~-----~~~~l~~~---~----~~~P~gl~vD~~~~~ly~~d~~~-------------------  238 (440)
                      .    ++|.+. +.+|.     .+++++..   .    ...|+++++++ .++||+++...                   
T Consensus        89 ~----~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~  163 (367)
T TIGR02604        89 P----PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLG  163 (367)
T ss_pred             C----CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccC
Confidence            4    478877 55543     33444432   1    23488999995 67999987621                   


Q ss_pred             CcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccC-CCc-------------------eEE-
Q psy14258        239 DFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFN-SDD-------------------YET-  296 (440)
Q Consensus       239 ~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~-g~~-------------------~~~-  296 (440)
                      +.|.+++.+|+..+.+..+  ++.|+|++++.+ .+|++|.......+++... ++.                   ... 
T Consensus       164 g~i~r~~pdg~~~e~~a~G--~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  241 (367)
T TIGR02604       164 GGLFRYNPDGGKLRVVAHG--FQNPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVP  241 (367)
T ss_pred             ceEEEEecCCCeEEEEecC--cCCCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCccccccccccccccc
Confidence            4699999999988877766  899999999754 8999987666555555321 100                   000 


Q ss_pred             -----------------EecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC--Cceeeeeec---C
Q psy14258        297 -----------------IANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT--TEQAIMPIT---D  354 (440)
Q Consensus       297 -----------------~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~--~~~~~~~~~---~  354 (440)
                                       +.....|.++.++....-|..  -++-|++++-..+.|.++.++..+.  ..+....+.   .
T Consensus       242 ~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~--~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~  319 (367)
T TIGR02604       242 TGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEE--YRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDT  319 (367)
T ss_pred             ccccccccccccccccccCCCccccEEEEeCCCcCCHH--HCCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCC
Confidence                             001114667777754433311  1366788888778999998874422  111011111   1


Q ss_pred             CCCceEEEEEcCCCEEEEEEC----------------CCCeEEEEecC
Q psy14258        355 LKRPSVIDYHEKEEYIYYAEL----------------TSYVIERRKMF  386 (440)
Q Consensus       355 ~~~p~~l~~d~~~~~vy~~d~----------------~~~~I~r~~~~  386 (440)
                      ..+|..++++++ +.||++|.                ..++|||+...
T Consensus       320 ~~rp~dv~~~pD-G~Lyv~d~~~~~i~~~~~d~~~~~~~GrIyRi~~~  366 (367)
T TIGR02604       320 WFRPVNVTVGPD-GALYVSDWYDRGIEHHHDDLNDGRNSGRIYRITPK  366 (367)
T ss_pred             cccccceeECCC-CCEEEEEeccCccccCCcccccCCCCceEEEEccC
Confidence            248999999996 55999992                45677777554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=1.4e-10  Score=109.19  Aligned_cols=212  Identities=16%  Similarity=0.160  Sum_probs=144.9

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-ceEEEEecC-
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-EAIYFCTHY-  159 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-~~I~~~~~d-  159 (440)
                      ..+..++...+.|||+|...++|++..........           +......+.+ .+| ..++|..+ ..+.+.+.+ 
T Consensus        27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-----------~~~p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~~~   94 (307)
T COG3386          27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-----------FPSPGGFSSGALID-AGGRLIACEHGVRLLDPDT   94 (307)
T ss_pred             ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-----------EECCCCcccceeec-CCCeEEEEccccEEEeccC
Confidence            55667899999999999999999998876333222           2223333666 776 45557766 555555544 


Q ss_pred             CceEEEEEc----CCCCCceEEEEcCCCCeEEEEEcC-----C----CCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        160 MEHCMIAID----LNLSKPRGIALDPTSGYMFFTKWG-----A----TRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       160 g~~~~~~~~----~~~~~P~~iavd~~~g~lywtd~~-----~----~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                      |...+.+..    ..+..|....+|| .|.+|+++..     .    ..++++|.+.+|... .++...+..||||++++
T Consensus        95 ~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~-~l~~~~~~~~NGla~Sp  172 (307)
T COG3386          95 GGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV-RLLDDDLTIPNGLAFSP  172 (307)
T ss_pred             CceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEE-EeecCcEEecCceEECC
Confidence            434233333    2357899999999 5999999988     2    156799999876554 35555588999999999


Q ss_pred             CCCEEEEEeCCCCcEEEEEcc---CC--C-cEEEecCCccCceeeeeEecC-EEE-EEecCCCeEEEEeccCCCceEEE-
Q psy14258        227 PTKHVYWVDTYLDFIDRINYD---GT--D-RKTIRKGFPVQNLYDITVFEN-NLF-VTSWRNQSIIRVNKFNSDDYETI-  297 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~d---G~--~-~~~i~~~~~~~~p~gl~~~~~-~ly-~td~~~~~i~~~~~~~g~~~~~~-  297 (440)
                      .+..||++|+..++|++++++   |.  + +..+.....-..|-|++++.+ .|| .+-|....|.++++. |+....+ 
T Consensus       173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~  251 (307)
T COG3386         173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK  251 (307)
T ss_pred             CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence            999999999999999999987   31  1 222222212357999999987 555 444555589999987 6665533 


Q ss_pred             ecCCCCeEEEEe
Q psy14258        298 ANFSRPFAIHIY  309 (440)
Q Consensus       298 ~~~~~p~~~~v~  309 (440)
                      .....|....+-
T Consensus       252 lP~~~~t~~~Fg  263 (307)
T COG3386         252 LPVKRPTNPAFG  263 (307)
T ss_pred             CCCCCCccceEe
Confidence            233445555444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=1.5e-09  Score=106.77  Aligned_cols=241  Identities=15%  Similarity=0.149  Sum_probs=175.5

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE-EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM-VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD  250 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l-~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~  250 (440)
                      ..|.++++++....+|+++...+  .+...+.- .+..+. ...+..+|.+++++..+.++|..+...+.|..++.....
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~--~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~  107 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSN--DVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT  107 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCc--eeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc
Confidence            48999999997779999997753  44444433 222222 122347899999999999999999999999999844332


Q ss_pred             -cEEEecCCccCceeeeeEe--cCEEEEEec--CCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeE
Q psy14258        251 -RKTIRKGFPVQNLYDITVF--ENNLFVTSW--RNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFL  324 (440)
Q Consensus       251 -~~~i~~~~~~~~p~gl~~~--~~~ly~td~--~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l  324 (440)
                       .+.+..+   ..|.++++.  +..+|+++.  .++.+..++..+++....+.....|.++.+.          |+ .++
T Consensus       108 ~~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~----------p~g~~v  174 (381)
T COG3391         108 VLGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVD----------PDGNKV  174 (381)
T ss_pred             eeeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEEC----------CCCCeE
Confidence             2333333   378888876  459999999  4799999999888776664444467777665          33 668


Q ss_pred             EeecCCccEEEEEEcCCCCCCc--eeeeeecCCCCceEEEEEcCCCEEEEEECCC--CeEEEEecCCCCeEEE--EECCC
Q psy14258        325 LYAKGKPAIIKGLTFKRDGTTE--QAIMPITDLKRPSVIDYHEKEEYIYYAELTS--YVIERRKMFGRGKEVV--IDTGI  398 (440)
Q Consensus       325 ~~~~~~~~~I~~i~~~~~~~~~--~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~--~~I~r~~~~g~~~~~~--~~~~~  398 (440)
                      ++++...+.|..++.++. ...  .....+.-...|.++++++.+.++|+++...  +.+.+.+.........  .....
T Consensus       175 yv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~  253 (381)
T COG3391         175 YVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG  253 (381)
T ss_pred             EEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC
Confidence            999876689998887665 111  0111244456899999999999999999877  6899998876443222  22334


Q ss_pred             CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        399 YNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       399 ~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                       .|.+++++|.+..+|.++...+.+.+++...
T Consensus       254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             -CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence             7999999999999999999889999998775

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.37  E-value=1.9e-08  Score=95.15  Aligned_cols=275  Identities=11%  Similarity=0.021  Sum_probs=170.0

Q ss_pred             cEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceE
Q psy14258        146 KIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG  221 (440)
Q Consensus       146 ~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~g  221 (440)
                      ++|++    +.+.+.+++.......+. .-..|.+++++|..+.||.+....  ..|...++++......+.. ...|..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~~~~~~l~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~-~~~~~~   77 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFP-VGQRPRGITLSKDGKLLYVCASDS--DTIQVIDLATGEVIGTLPS-GPDPEL   77 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEE-CCCCCCceEECCCCCEEEEEECCC--CeEEEEECCCCcEEEeccC-CCCccE
Confidence            46666    678888876544433333 235689999999767788887554  5888888875433222222 234778


Q ss_pred             EEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEec
Q psy14258        222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIAN  299 (440)
Q Consensus       222 l~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~  299 (440)
                      +++++.++.||.+....+.|...++...........  -..|.++++..+  .++.+......+..++..+++....+..
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV  155 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence            899988888998877677898888865332211111  234778887644  5555544334455556544433322222


Q ss_pred             CCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeec----CCCCceEEEEEcCCCEEEEEE
Q psy14258        300 FSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT----DLKRPSVIDYHEKEEYIYYAE  374 (440)
Q Consensus       300 ~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~----~~~~p~~l~~d~~~~~vy~~d  374 (440)
                      ...|..+.+.          ++ .+|+++....+.|..+++..............    ....|.+++|++.++.+|++.
T Consensus       156 ~~~~~~~~~s----------~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       156 DQRPRFAEFT----------ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             CCCccEEEEC----------CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            2245444333          23 45656544447788888765411111111111    112467899999999999987


Q ss_pred             CCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEe
Q psy14258        375 LTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       375 ~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l  437 (440)
                      ...++|...++........+..+ ..+.+|++.+.+..||.+....+.|.+.++++....+.+
T Consensus       226 ~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       226 GPANRVAVVDAKTYEVLDYLLVG-QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             CCCCeEEEEECCCCcEEEEEEeC-CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            77788998888753332222222 468999999989999998877889999999884433433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.36  E-value=2.2e-10  Score=110.35  Aligned_cols=273  Identities=14%  Similarity=0.057  Sum_probs=161.6

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeec---CCcEEEe---c----
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMV---THKIVYP---E----  151 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~---~~~lY~~---~----  151 (440)
                      |.+|++.+. ++||+++. .++|+++..++.....+.   ....+ ...+...+-+ |+++.   ++.||++   .    
T Consensus         4 P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~---~~~~v-~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    4 PRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVA---DLPEV-FADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             EEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEE---E-TTT-BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             ceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceec---ccccc-cccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            999999987 78999998 789988875544312221   11122 2345567889 99983   6789988   2    


Q ss_pred             -----eEEEEecCCc-----eEEEEEc------CCCCCceEEEEcCCCCeEEEEEcCC-----------CCCcEEEEeCC
Q psy14258        152 -----AIYFCTHYME-----HCMIAID------LNLSKPRGIALDPTSGYMFFTKWGA-----------TRPMLERSLLD  204 (440)
Q Consensus       152 -----~I~~~~~dg~-----~~~~~~~------~~~~~P~~iavd~~~g~lywtd~~~-----------~~~~I~r~~~d  204 (440)
                           +|.+..++..     ..++++.      ...+.-.+|+++| .|+||++-...           ..++|.|++.|
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence                 5888776543     2344443      1345678899999 68999994221           14789999999


Q ss_pred             CCC------------ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeee--Eec
Q psy14258        205 GTE------------RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDIT--VFE  270 (440)
Q Consensus       205 G~~------------~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~--~~~  270 (440)
                      |+.            ...++..++..|.+|++|+.+++||.+|.+.+..+.++       .+..+.....|..-.  -..
T Consensus       157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein-------~i~~G~nYGWP~~~~~~~~~  229 (331)
T PF07995_consen  157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEIN-------RIEPGGNYGWPYCEGGPKYS  229 (331)
T ss_dssp             SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEE-------EE-TT-B--TTTBSSSCSTT
T ss_pred             CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEE-------EeccCCcCCCCCCcCCCCCC
Confidence            972            34677788999999999988899999997765444443       222222233333110  000


Q ss_pred             CEEEEEecCCCeEEEEeccCCC--ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCcee
Q psy14258        271 NNLFVTSWRNQSIIRVNKFNSD--DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQA  348 (440)
Q Consensus       271 ~~ly~td~~~~~i~~~~~~~g~--~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~  348 (440)
                      +. ...+.        ....+.  ....+..-..|.++.++....-|.   =++-+++++....+|.++.++..+.....
T Consensus       230 ~~-~~~~~--------~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~---~~g~~~~~~~~~~~i~~~~~~~~~~~~~~  297 (331)
T PF07995_consen  230 GP-PIGDA--------PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPE---YRGDLFVADYGGGRIWRLDLDEDGSVTEE  297 (331)
T ss_dssp             SS--ECTG--------SS-TTS---SEEETTT--EEEEEEE-SSSSGG---GTTEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             CC-ccccc--------cCCCCcCccceeecCccccCceEEECCccCcc---ccCcEEEecCCCCEEEEEeeecCCCccce
Confidence            00 00000        000011  011122223588988875544331   24678888887789999999755222222


Q ss_pred             eeeecCCC-CceEEEEEcCCCEEEEEECCCCeEEE
Q psy14258        349 IMPITDLK-RPSVIDYHEKEEYIYYAELTSYVIER  382 (440)
Q Consensus       349 ~~~~~~~~-~p~~l~~d~~~~~vy~~d~~~~~I~r  382 (440)
                      ...+.... +|.+|+++++ +.||+++...+.|||
T Consensus       298 ~~~~~~~~~r~~~v~~~pD-G~Lyv~~d~~G~iyR  331 (331)
T PF07995_consen  298 EEFLGGFGGRPRDVAQGPD-GALYVSDDSDGKIYR  331 (331)
T ss_dssp             EEECTTSSS-EEEEEEETT-SEEEEEE-TTTTEEE
T ss_pred             EEccccCCCCceEEEEcCC-CeEEEEECCCCeEeC
Confidence            22334455 7999999995 779999989999997

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4659|consensus

Probab=99.34  E-value=4.3e-10  Score=117.27  Aligned_cols=193  Identities=12%  Similarity=0.105  Sum_probs=133.8

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCcee-eeee-cccceEEEEEeeecccEEEEEEcCCCCceeEE-eCCCCCcc----e
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEG-LSFL-TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIA-LDPTSGYM----F  118 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~-~~~~-~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~-~~~~~~~~----~  118 (440)
                      +.+|++.+-+-     |+|+..+|...+ +.+. ...+.-.-||++|..+.||++|..+.+|+|+. +.......    +
T Consensus       375 DGSl~VGDfNy-----IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evv  449 (1899)
T KOG4659|consen  375 DGSLIVGDFNY-----IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVV  449 (1899)
T ss_pred             CCcEEEccchh-----eeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEE
Confidence            67888888888     999999998877 5554 22233678999999999999999999999865 22211110    0


Q ss_pred             eecc----------ccccceeeccccccce-eeeecCCcEEEe--ceEEEEecCCceEEEEEcC----------------
Q psy14258        119 FTKW----------GATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHYMEHCMIAIDL----------------  169 (440)
Q Consensus       119 ~~~~----------~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~----------------  169 (440)
                      .+.+          ..........+..|.| |||- .++||++  .+|.+.+.+|--...+...                
T Consensus       450 aG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~  528 (1899)
T KOG4659|consen  450 AGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLV  528 (1899)
T ss_pred             eccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchh
Confidence            0000          0001112356789999 9995 5569999  6788888888554443221                


Q ss_pred             --CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec--------------------CccCceEEEEeCC
Q psy14258        170 --NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH--------------------KIVYPYGVTVDFP  227 (440)
Q Consensus       170 --~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~--------------------~~~~P~gl~vD~~  227 (440)
                        .+.+|..+||||..+.||+-|..    -|.|+..++..+ ++...                    .+..|..|++- .
T Consensus       529 ~~~leWPT~LaV~Pmdnsl~Vld~n----vvlrit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~  602 (1899)
T KOG4659|consen  529 DLQLEWPTSLAVDPMDNSLLVLDTN----VVLRITVVHRVR-IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-T  602 (1899)
T ss_pred             heeeecccceeecCCCCeEEEeecc----eEEEEccCccEE-EEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-C
Confidence              46899999999999999999954    788888887655 22111                    13346788997 6


Q ss_pred             CCEEEEEeCCCCcEEEEEccCCC
Q psy14258        228 TKHVYWVDTYLDFIDRINYDGTD  250 (440)
Q Consensus       228 ~~~ly~~d~~~~~i~~~~~dG~~  250 (440)
                      .+-||++++...+|.++..-+++
T Consensus       603 ~G~lyvaEsD~rriNrvr~~~td  625 (1899)
T KOG4659|consen  603 DGALYVAESDGRRINRVRKLSTD  625 (1899)
T ss_pred             CceEEEEeccchhhhheEEeccC
Confidence            78999999877766665543333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.34  E-value=2.5e-08  Score=94.39  Aligned_cols=282  Identities=11%  Similarity=0.013  Sum_probs=171.1

Q ss_pred             EEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEc
Q psy14258         94 CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAID  168 (440)
Q Consensus        94 ~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~  168 (440)
                      .+|.+....+.|+..++.......          .+ .....|.+ ++++.++.+|.+    +.|.+.+.++......+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~----------~~-~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~   70 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTR----------TF-PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP   70 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEE----------EE-ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc
Confidence            466676666666665554222110          11 22345788 898888888877    678888887544332222


Q ss_pred             CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC
Q psy14258        169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG  248 (440)
Q Consensus       169 ~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG  248 (440)
                       .-..|..++++|..+.+|.+....  ..|...++........+. .-..|.++++++.+..++.+......+..++...
T Consensus        71 -~~~~~~~~~~~~~g~~l~~~~~~~--~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        71 -SGPDPELFALHPNGKILYIANEDD--NLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             -CCCCccEEEECCCCCEEEEEcCCC--CeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence             224578999999777788876543  488888887533221111 1235789999987777777765444555556543


Q ss_pred             CCcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEe-cC-------CCCeEEEEeccCCCCCCC
Q psy14258        249 TDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIA-NF-------SRPFAIHIYHRQKQPDAL  318 (440)
Q Consensus       249 ~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~-~~-------~~p~~~~v~~~~~qp~~~  318 (440)
                      .........  -..|..+++..  ..||++....+.|..++..+++....+. ..       ..|.++.+.         
T Consensus       147 ~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s---------  215 (300)
T TIGR03866       147 YEIVDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT---------  215 (300)
T ss_pred             CeEEEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC---------
Confidence            322211111  13466676653  3677776667788888887765543221 10       012333322         


Q ss_pred             CCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC
Q psy14258        319 KPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG  397 (440)
Q Consensus       319 ~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~  397 (440)
                       |+ .+++++....+.|..+++...    .....+.....+.+++|++.+++||.+....+.|...++.+.....-+..+
T Consensus       216 -~dg~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       216 -KDGKTAFVALGPANRVAVVDAKTY----EVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             -CCCCEEEEEcCCCCeEEEEECCCC----cEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence             23 456666554567888877543    122112222468899999999999988777899999999875543333444


Q ss_pred             CCCeeeEEEe
Q psy14258        398 IYNVEGMAVD  407 (440)
Q Consensus       398 ~~~~~glAvD  407 (440)
                       ..|.+||+-
T Consensus       291 -~~~~~~~~~  299 (300)
T TIGR03866       291 -RLPWGVVVR  299 (300)
T ss_pred             -cccceeEeC
Confidence             789999973

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.33  E-value=2.4e-08  Score=95.54  Aligned_cols=261  Identities=13%  Similarity=0.127  Sum_probs=154.4

Q ss_pred             ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEc---------CCCCCcEEEEeCCCCCce-eEEe-c-----
Q psy14258        151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKW---------GATRPMLERSLLDGTERF-PMVT-H-----  214 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~---------~~~~~~I~r~~~dG~~~~-~l~~-~-----  214 (440)
                      ++|.+.+.+.....--+..+ ..|+++ +.|.++.||.++.         ..  ..|...+..-.... .+.. .     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~--d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRT--DYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCC--CEEEEEECccCcEEeEEccCCCchhh
Confidence            47888887765543333333 589997 9999999999998         44  47888777532221 2211 0     


Q ss_pred             CccCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCCc-EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccC-C
Q psy14258        215 KIVYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFN-S  291 (440)
Q Consensus       215 ~~~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~-g  291 (440)
                      ....|..+++.+.++.||+++.. .+.+..+|+....+ ..+.-    +.+..+-...+.=+...+..++...+.... |
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g  178 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG  178 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence            13456699999999999999976 78999998765433 22322    111111111111111111222222222111 2


Q ss_pred             CceEEEecCCCCeEEEEeccCCCCCCCCC------ceeEEeecCCccEEEEEEcCCCCCCceeeeeecCC------CCce
Q psy14258        292 DDYETIANFSRPFAIHIYHRQKQPDALKP------STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL------KRPS  359 (440)
Q Consensus       292 ~~~~~~~~~~~p~~~~v~~~~~qp~~~~~------~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~------~~p~  359 (440)
                      +..        -....+++....|....|      +..+|++..  +.|..+++.+........+.+...      -+|.
T Consensus       179 ~~~--------~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~  248 (352)
T TIGR02658       179 NPK--------IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG  248 (352)
T ss_pred             ceE--------EeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence            211        111223332222221112      366667666  999999987662221111111111      1455


Q ss_pred             E---EEEEcCCCEEEEEE-C--------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCC-cEEEEeCCCCeEEEE
Q psy14258        360 V---IDYHEKEEYIYYAE-L--------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN-NLYWTDAGIGTINVA  426 (440)
Q Consensus       360 ~---l~~d~~~~~vy~~d-~--------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~-~lYwtd~~~~~I~~~  426 (440)
                      |   +++++.++++|++. .        ..+.|..++.....+..-+..+ ..|.+|++...++ .||.++...+.|.++
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsVi  327 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIF  327 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence            4   99999999999953 2        3368999998765444444444 5899999999999 999999999999999


Q ss_pred             EeCC
Q psy14258        427 KISD  430 (440)
Q Consensus       427 ~~~g  430 (440)
                      +...
T Consensus       328 D~~t  331 (352)
T TIGR02658       328 DAET  331 (352)
T ss_pred             ECcC
Confidence            9865

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.31  E-value=2.2e-09  Score=105.14  Aligned_cols=232  Identities=15%  Similarity=0.165  Sum_probs=144.2

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCC----------CCCcEEEEeC---CCCC-ceeEEecCccCceEEEEeCCCCEEEEEe
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGA----------TRPMLERSLL---DGTE-RFPMVTHKIVYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~----------~~~~I~r~~~---dG~~-~~~l~~~~~~~P~gl~vD~~~~~ly~~d  235 (440)
                      .+.+|++|++|+ .|.||+++...          ...+|.+..-   ||.- ..+++.+.+..|.||++. .++ ||+++
T Consensus        12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~~G-lyV~~   88 (367)
T TIGR02604        12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-VGG-VYVAT   88 (367)
T ss_pred             ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-cCC-EEEeC
Confidence            379999999999 69999998521          1127877754   4442 335666778899999997 445 99986


Q ss_pred             CCCCcEEEE-EccCC-----CcEEEecCCc------cCceeeeeEecC-EEEEEecCC-------------------CeE
Q psy14258        236 TYLDFIDRI-NYDGT-----DRKTIRKGFP------VQNLYDITVFEN-NLFVTSWRN-------------------QSI  283 (440)
Q Consensus       236 ~~~~~i~~~-~~dG~-----~~~~i~~~~~------~~~p~gl~~~~~-~ly~td~~~-------------------~~i  283 (440)
                      .  ..|.++ +.+|.     .++++..+-.      ...+.++++..| .||+++...                   +.|
T Consensus        89 ~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        89 P--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             C--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence            4  468777 34442     4455555311      233778998766 999987621                   568


Q ss_pred             EEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCC----CC-------------c
Q psy14258        284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDG----TT-------------E  346 (440)
Q Consensus       284 ~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~----~~-------------~  346 (440)
                      +++++.+++...+..++..|.++.+.          +++.|++++.......++..-..+    .+             .
T Consensus       167 ~r~~pdg~~~e~~a~G~rnp~Gl~~d----------~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~  236 (367)
T TIGR02604       167 FRYNPDGGKLRVVAHGFQNPYGHSVD----------SWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGA  236 (367)
T ss_pred             EEEecCCCeEEEEecCcCCCccceEC----------CCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccc
Confidence            88888655433333456678888776          345566666533333222211000    00             0


Q ss_pred             eeee--------------ee---cCCCCceEEEEE-------cCCCEEEEEECCCCeEEEEecC--CCCe----EEEEEC
Q psy14258        347 QAIM--------------PI---TDLKRPSVIDYH-------EKEEYIYYAELTSYVIERRKMF--GRGK----EVVIDT  396 (440)
Q Consensus       347 ~~~~--------------~~---~~~~~p~~l~~d-------~~~~~vy~~d~~~~~I~r~~~~--g~~~----~~~~~~  396 (440)
                      ....              +.   .....|.|++|-       .-.+.+++++...+.|.++.++  |+..    +.++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~  316 (367)
T TIGR02604       237 DHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRS  316 (367)
T ss_pred             cccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCceEec
Confidence            0000              01   112367888876       3457899999999999999986  4321    223332


Q ss_pred             --CCCCeeeEEEecCCCcEEEEe
Q psy14258        397 --GIYNVEGMAVDWMANNLYWTD  417 (440)
Q Consensus       397 --~~~~~~glAvD~~~~~lYwtd  417 (440)
                        ....|..+++++.+ .||++|
T Consensus       317 ~~~~~rp~dv~~~pDG-~Lyv~d  338 (367)
T TIGR02604       317 NDTWFRPVNVTVGPDG-ALYVSD  338 (367)
T ss_pred             CCCcccccceeECCCC-CEEEEE
Confidence              12579999999865 599999

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=7.2e-09  Score=101.91  Aligned_cols=267  Identities=11%  Similarity=0.075  Sum_probs=179.9

Q ss_pred             ccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258        133 LLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  207 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~  207 (440)
                      ...|.+ +++..+.++|++    +.+...+............+...|.++++++...++|.++...  ..|...+.+...
T Consensus        30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~--~~v~vid~~~~~  107 (381)
T COG3391          30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS--NTVSVIDTATNT  107 (381)
T ss_pred             CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCC--CeEEEEcCcccc
Confidence            348999 999999999999    3344443331111222222337899999999989999999876  488888855443


Q ss_pred             ceeEEecCccCceEEEEeCCCCEEEEEeCC--CCcEEEEEccCCCcE-EEecCCccCceeeeeEecC--EEEEEecCCCe
Q psy14258        208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTY--LDFIDRINYDGTDRK-TIRKGFPVQNLYDITVFEN--NLFVTSWRNQS  282 (440)
Q Consensus       208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~--~~~i~~~~~dG~~~~-~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~  282 (440)
                      ........ ..|.++++|+.++.+|+++..  .+.+..++....... .+..+   ..|.++++..+  .+|.++..++.
T Consensus       108 ~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG---~~P~~~a~~p~g~~vyv~~~~~~~  183 (381)
T COG3391         108 VLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG---NTPTGVAVDPDGNKVYVTNSDDNT  183 (381)
T ss_pred             eeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC---CCcceEEECCCCCeEEEEecCCCe
Confidence            33222222 279999999999999999994  688888886644332 22223   36899998754  89999988999


Q ss_pred             EEEEeccCCCceE-----EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCc--cEEEEEEcCCCCCCceeeeeecCC
Q psy14258        283 IIRVNKFNSDDYE-----TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP--AIIKGLTFKRDGTTEQAIMPITDL  355 (440)
Q Consensus       283 i~~~~~~~g~~~~-----~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~--~~I~~i~~~~~~~~~~~~~~~~~~  355 (440)
                      |..++..+.....     .+.....|.++.+..         ...++|+++...  +.+.+++.... .-.....++...
T Consensus       184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~---------~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~  253 (381)
T COG3391         184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP---------DGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSG  253 (381)
T ss_pred             EEEEeCCCcceeccccccccccCCCCceEEECC---------CCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccC
Confidence            9988853322221     133344677777762         236688887765  58888887665 222223455666


Q ss_pred             CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCC---CCeeeEEEecCCCcEEEE
Q psy14258        356 KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGI---YNVEGMAVDWMANNLYWT  416 (440)
Q Consensus       356 ~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~---~~~~glAvD~~~~~lYwt  416 (440)
                       .|.+++++|.+..+|+++...+.++.++.........+..+.   ..|..+++-......|.+
T Consensus       254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (381)
T COG3391         254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYDTNYVS  316 (381)
T ss_pred             -CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecccccce
Confidence             899999999999999999999999999888755554444332   236666655444333333

>KOG4659|consensus

Probab=99.21  E-value=2.7e-09  Score=111.51  Aligned_cols=273  Identities=15%  Similarity=0.158  Sum_probs=172.5

Q ss_pred             cCCcEEEe---ceEEEEecCCceEEEEEc--------CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        143 VTHKIVYP---EAIYFCTHYMEHCMIAID--------LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       143 ~~~~lY~~---~~I~~~~~dg~~~~~~~~--------~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                      .+++.|.+   ..|.-.-.||..+.+-+.        ..|-.|.++|.-| .|.||+-|.+    -|.|...||..+.++
T Consensus       325 nG~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~-DGSl~VGDfN----yIRRI~~dg~v~tIl  399 (1899)
T KOG4659|consen  325 NGGNRLITEEPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAP-DGSLIVGDFN----YIRRISQDGQVSTIL  399 (1899)
T ss_pred             CCcceEeecCCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcC-CCcEEEccch----heeeecCCCceEEEE
Confidence            45677877   334445556655443332        2466899999998 7999999876    899999999887765


Q ss_pred             Eec--CccCceEEEEeCCCCEEEEEeCCCCcEEEEE-ccCCC----cEEEec-C------------------CccCceee
Q psy14258        212 VTH--KIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN-YDGTD----RKTIRK-G------------------FPVQNLYD  265 (440)
Q Consensus       212 ~~~--~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~-~dG~~----~~~i~~-~------------------~~~~~p~g  265 (440)
                      -..  ...+-.-||+||..+.||++|....+|+++. +.+++    -+++.- +                  ..+..|.|
T Consensus       400 ~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkG  479 (1899)
T KOG4659|consen  400 TLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKG  479 (1899)
T ss_pred             EecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCc
Confidence            432  3445568999999999999999999999987 22222    222221 1                  23668999


Q ss_pred             eeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC---CCe----EEEEec-cCCCCCCC--CC-ceeEEeecCCccE
Q psy14258        266 ITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS---RPF----AIHIYH-RQKQPDAL--KP-STFLLYAKGKPAI  333 (440)
Q Consensus       266 l~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~---~p~----~~~v~~-~~~qp~~~--~~-~~~l~~~~~~~~~  333 (440)
                      |+++.+ .||++|.  ..|.+++. +|--.+++....   +|.    .+++.. ....|...  +| ++.|++-|.  +.
T Consensus       480 Ia~dk~g~lYfaD~--t~IR~iD~-~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nv  554 (1899)
T KOG4659|consen  480 IAFDKMGNLYFADG--TRIRVIDT-TGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NV  554 (1899)
T ss_pred             eeEccCCcEEEecc--cEEEEecc-CceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ce
Confidence            999975 9999995  45667775 332222222111   111    011111 11112221  12 477888877  77


Q ss_pred             EEEEEcCCC-----CCCceeeee-----------ecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE--
Q psy14258        334 IKGLTFKRD-----GTTEQAIMP-----------ITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID--  395 (440)
Q Consensus       334 I~~i~~~~~-----~~~~~~~~~-----------~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~--  395 (440)
                      |.+|+.++.     +.+....++           -..+..|++|++.. .|.||++++...+|.|+..-+++.+.-+.  
T Consensus       555 vlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~-~G~lyvaEsD~rriNrvr~~~tdg~i~ilaG  633 (1899)
T KOG4659|consen  555 VLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT-DGALYVAESDGRRINRVRKLSTDGTISILAG  633 (1899)
T ss_pred             EEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC-CceEEEEeccchhhhheEEeccCceEEEecC
Confidence            777776654     111110111           01233578999987 47799999888777777665544333221  


Q ss_pred             -------------------------CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258        396 -------------------------TGIYNVEGMAVDWMANNLYWTDAGIGTINVAK  427 (440)
Q Consensus       396 -------------------------~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~  427 (440)
                                               +.++.|..|||-+ .+.+|++|.++-+|..++
T Consensus       634 a~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsP-dg~v~IAD~gN~rIr~Vs  689 (1899)
T KOG4659|consen  634 AKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSP-DGDVIIADSGNSRIRKVS  689 (1899)
T ss_pred             CCCCCCcccccCCccccccchhhhccccCCcceEEECC-CCcEEEecCCchhhhhhh
Confidence                                     2346799999998 456999999988876553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=1.5e-06  Score=80.67  Aligned_cols=277  Identities=14%  Similarity=0.040  Sum_probs=176.2

Q ss_pred             cEEEEEEcC---CCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe------ceEEEEecCCc-
Q psy14258         93 HCMIAIDLN---LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP------EAIYFCTHYME-  161 (440)
Q Consensus        93 ~~ly~~d~~---~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~------~~I~~~~~dg~-  161 (440)
                      ..+|+....   +..|++..++....+-       ..+.+.....+|.= |+++..+.||..      +.|..+..|.. 
T Consensus         3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l-------~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~   75 (346)
T COG2706           3 QTVYIGTYTKRESQGIYVFNLDTKTGEL-------SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD   75 (346)
T ss_pred             eEEEEeeecccCCCceEEEEEeCccccc-------chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC
Confidence            457777766   7778888887443221       12234567889999 999999999998      56777777653 


Q ss_pred             eEEEEEcC---CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC--CCCCceeEEe---cC--------ccCceEEEEe
Q psy14258        162 HCMIAIDL---NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL--DGTERFPMVT---HK--------IVYPYGVTVD  225 (440)
Q Consensus       162 ~~~~~~~~---~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~--dG~~~~~l~~---~~--------~~~P~gl~vD  225 (440)
                      .+-+++..   ....|.-+++|+.+.+||.++...  +.|.+..+  ||+-...+-.   ..        -.++...-++
T Consensus        76 G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~--g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t  153 (346)
T COG2706          76 GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS--GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT  153 (346)
T ss_pred             CeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC--ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC
Confidence            22233332   235569999999888999999886  45555544  6665443211   11        1235566778


Q ss_pred             CCCCEEEEEeCCCCcEEEEEccCCCcEEEec--CCccCceeeeeEecC--EEEEEecCCCeEEEE--eccCCCceE--EE
Q psy14258        226 FPTKHVYWVDTYLDFIDRINYDGTDRKTIRK--GFPVQNLYDITVFEN--NLFVTSWRNQSIIRV--NKFNSDDYE--TI  297 (440)
Q Consensus       226 ~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~--~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~--~~~~g~~~~--~~  297 (440)
                      |.++.|+.+|-+.++|...+++-+..+....  -..-..|.-|++..+  ..|...-=+++|...  +...|+..+  .+
T Consensus       154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i  233 (346)
T COG2706         154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI  233 (346)
T ss_pred             CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence            8899999999999999999986333322211  012356888888754  888877656665544  333233222  22


Q ss_pred             ecC----CC---CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEEEEEcCCCE
Q psy14258        298 ANF----SR---PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHEKEEY  369 (440)
Q Consensus       298 ~~~----~~---p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~~~~~  369 (440)
                      ..+    ..   ..+|++.+         ...|||+++.+...|..+.++..+..-......+ ...-|++..+++.++.
T Consensus       234 ~tlP~dF~g~~~~aaIhis~---------dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~  304 (346)
T COG2706         234 DTLPEDFTGTNWAAAIHISP---------DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF  304 (346)
T ss_pred             ccCccccCCCCceeEEEECC---------CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence            222    21   22344442         2379999998877776666655521111111112 2335999999999999


Q ss_pred             EEEEECCCCeEEEEecCC
Q psy14258        370 IYYAELTSYVIERRKMFG  387 (440)
Q Consensus       370 vy~~d~~~~~I~r~~~~g  387 (440)
                      |+.+...++.|..+..|.
T Consensus       305 Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         305 LIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEEccCCCcEEEEEEcC
Confidence            999988888777777664

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.05  E-value=1e-09  Score=70.91  Aligned_cols=41  Identities=34%  Similarity=0.652  Sum_probs=39.3

Q ss_pred             CEEEEEECCCC-eEEEEecCCCCeEEEEECCCCCeeeEEEec
Q psy14258        368 EYIYYAELTSY-VIERRKMFGRGKEVVIDTGIYNVEGMAVDW  408 (440)
Q Consensus       368 ~~vy~~d~~~~-~I~r~~~~g~~~~~~~~~~~~~~~glAvD~  408 (440)
                      ++|||+|...+ +|.+++++|+++++++..++..|+||||||
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            57999999999 999999999999999999999999999997

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.04  E-value=2.6e-07  Score=82.65  Aligned_cols=278  Identities=14%  Similarity=0.104  Sum_probs=186.2

Q ss_pred             ccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG  205 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG  205 (440)
                      .....|.. |.++.+- ++++    +.|-+.+......++.--..-..|++|.++| .|..+++|.+.   .|.|.+..-
T Consensus        59 p~G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~---aI~R~dpkt  133 (353)
T COG4257          59 PNGSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL---AIGRLDPKT  133 (353)
T ss_pred             CCCCCccccccCCCCc-eEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc---eeEEecCcc
Confidence            34557888 8887665 5555    6788877765554444333457899999999 69999999873   788877633


Q ss_pred             CCceeEEe--c-CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCC
Q psy14258        206 TERFPMVT--H-KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQ  281 (440)
Q Consensus       206 ~~~~~l~~--~-~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~  281 (440)
                      -..+.+-.  + ....-+-..+| ..++|+++.. .+.--+.|..-..+++.... .-..|+||.+..+ .+|++....+
T Consensus       134 ~evt~f~lp~~~a~~nlet~vfD-~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagn  210 (353)
T COG4257         134 LEVTRFPLPLEHADANLETAVFD-PWGNLWFTGQ-IGAYGRLDPARNVISVFPAP-QGGGPYGICATPDGSVWYASLAGN  210 (353)
T ss_pred             cceEEeecccccCCCcccceeeC-CCccEEEeec-cccceecCcccCceeeeccC-CCCCCcceEECCCCcEEEEecccc
Confidence            22222211  1 11223446788 7788888864 44444555444445555443 2567999999866 9999999999


Q ss_pred             eEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC-CceE
Q psy14258        282 SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK-RPSV  360 (440)
Q Consensus       282 ~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~-~p~~  360 (440)
                      .|.++|.+++....+..    |.+++.-.+..-   .++-+.+..++...+++++++.... ...  ..++.+.+ +|..
T Consensus       211 aiaridp~~~~aev~p~----P~~~~~gsRriw---sdpig~~wittwg~g~l~rfdPs~~-sW~--eypLPgs~arpys  280 (353)
T COG4257         211 AIARIDPFAGHAEVVPQ----PNALKAGSRRIW---SDPIGRAWITTWGTGSLHRFDPSVT-SWI--EYPLPGSKARPYS  280 (353)
T ss_pred             ceEEcccccCCcceecC----CCcccccccccc---cCccCcEEEeccCCceeeEeCcccc-cce--eeeCCCCCCCcce
Confidence            99999999884443332    333222111110   0233567777777788888887666 322  34555543 7888


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      +-+|.. ++|+.+|...+.|-|++...... +++...-.++..+++|...+.|+.++.+...+.+++.
T Consensus       281 ~rVD~~-grVW~sea~agai~rfdpeta~f-tv~p~pr~n~gn~ql~gr~ge~W~~e~gvd~lv~~r~  346 (353)
T COG4257         281 MRVDRH-GRVWLSEADAGAIGRFDPETARF-TVLPIPRPNSGNIQLDGRPGELWFTEAGVDALVTTRI  346 (353)
T ss_pred             eeeccC-CcEEeeccccCceeecCcccceE-EEecCCCCCCCceeccCCCCceeecccCcceeEEEEe
Confidence            989874 66988999999999999986543 3434344667789999999999999999888887764

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.04  E-value=7.1e-10  Score=71.62  Aligned_cols=42  Identities=33%  Similarity=0.801  Sum_probs=39.1

Q ss_pred             CeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        184 GYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       184 g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                      ++|||||++.. ++|+++++||+++++++...+.+|.|||||+
T Consensus         1 ~~iYWtD~~~~-~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQD-PSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTT-EEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCC-cEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            68999999985 5999999999999999999999999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.04  E-value=2.8e-07  Score=88.86  Aligned_cols=261  Identities=16%  Similarity=0.142  Sum_probs=148.1

Q ss_pred             ccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEc------CCCCCceEEEEcC---CCCeEEEEEcCC------
Q psy14258        133 LLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAID------LNLSKPRGIALDP---TSGYMFFTKWGA------  193 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~------~~~~~P~~iavd~---~~g~lywtd~~~------  193 (440)
                      +..|.+ |+.+. +.||++   ++|.+.+.+|.....+..      .....+.|||++|   .+++||+.-...      
T Consensus         1 L~~P~~~a~~pd-G~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    1 LNNPRSMAFLPD-GRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             ESSEEEEEEETT-SCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCCceEEEEeCC-CcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            457999 99988 568999   899999988877333322      2345689999999   368888775421      


Q ss_pred             CCCcEEEEeCCCC-----CceeEEec------CccCceEEEEeCCCCEEEEEeC-------------CCCcEEEEEccCC
Q psy14258        194 TRPMLERSLLDGT-----ERFPMVTH------KIVYPYGVTVDFPTKHVYWVDT-------------YLDFIDRINYDGT  249 (440)
Q Consensus       194 ~~~~I~r~~~dG~-----~~~~l~~~------~~~~P~gl~vD~~~~~ly~~d~-------------~~~~i~~~~~dG~  249 (440)
                      ...+|.|..++..     ..++++..      ....-.+|++++ .++||++-.             ..++|.+++.||+
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCc
Confidence            1237888888655     23334322      233456799996 559999842             2348999999987


Q ss_pred             -------------CcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccC-CCceEEEecCCCCeEEEEeccCC
Q psy14258        250 -------------DRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFN-SDDYETIANFSRPFAIHIYHRQK  313 (440)
Q Consensus       250 -------------~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~-g~~~~~~~~~~~p~~~~v~~~~~  313 (440)
                                   ..++...+  +++|++++++.  +.||.+|.+....-.++... |+      +...|.--.    ..
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~G--lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~------nYGWP~~~~----~~  226 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYG--LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGG------NYGWPYCEG----GP  226 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-------B--TTTBSS----SC
T ss_pred             CCCCCccccCCCceEEEEEeC--CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCC------cCCCCCCcC----CC
Confidence                         45566666  89999999996  49999886543322222110 11      011111000    00


Q ss_pred             CCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc------CCCEEEEEECCCCeEEEEecCC
Q psy14258        314 QPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE------KEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       314 qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~------~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      .+.     +. ...+.         .... ..............|.|+.|-.      -.+.+++++...++|+++.++.
T Consensus       227 ~~~-----~~-~~~~~---------~~~~-~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~  290 (331)
T PF07995_consen  227 KYS-----GP-PIGDA---------PSCP-GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDE  290 (331)
T ss_dssp             STT-----SS--ECTG---------SS-T-TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEET
T ss_pred             CCC-----CC-ccccc---------cCCC-CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeec
Confidence            000     00 00000         0000 0000011111223566666542      2567999999999999999974


Q ss_pred             CC----eEEEEECCCC-CeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258        388 RG----KEVVIDTGIY-NVEGMAVDWMANNLYWTDAGIGTINV  425 (440)
Q Consensus       388 ~~----~~~~~~~~~~-~~~glAvD~~~~~lYwtd~~~~~I~~  425 (440)
                      ..    .+.++ .+.. .|.+|++++. |.||+++...++|.+
T Consensus       291 ~~~~~~~~~~~-~~~~~r~~~v~~~pD-G~Lyv~~d~~G~iyR  331 (331)
T PF07995_consen  291 DGSVTEEEEFL-GGFGGRPRDVAQGPD-GALYVSDDSDGKIYR  331 (331)
T ss_dssp             TEEEEEEEEEC-TTSSS-EEEEEEETT-SEEEEEE-TTTTEEE
T ss_pred             CCCccceEEcc-ccCCCCceEEEEcCC-CeEEEEECCCCeEeC
Confidence            32    22222 3445 7999999985 689999888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.02  E-value=4.2e-06  Score=81.78  Aligned_cols=316  Identities=10%  Similarity=0.026  Sum_probs=174.0

Q ss_pred             cEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeecccccc-ce-eeeecCCcEEEe---ceEEEEecCCceEEEEE
Q psy14258         93 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG-TE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAI  167 (440)
Q Consensus        93 ~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p-~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~  167 (440)
                      +.+|+++...+++..++.  ...+.+      .  .+.. ...+ .+ ++.+.++.+|++   +.|.+.++.......-+
T Consensus         6 ~l~~V~~~~~~~v~viD~--~t~~~~------~--~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i   74 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDG--ATNKVV------A--RIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI   74 (369)
T ss_dssp             GEEEEEEGGGTEEEEEET--TT-SEE------E--EEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE
T ss_pred             cEEEEEecCCCEEEEEEC--CCCeEE------E--EEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE
Confidence            456677877777655443  222211      0  1222 2233 44 677888999999   78999998765543223


Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-------ccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-------IVYPYGVTVDFPTKHVYWVDTYLDF  240 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-------~~~P~gl~vD~~~~~ly~~d~~~~~  240 (440)
                      ..+ ..|+++++.+...++|.+++..  +.+...+...-.....+...       -.++.+|.-.+.....+++-...+.
T Consensus        75 ~~G-~~~~~i~~s~DG~~~~v~n~~~--~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~  151 (369)
T PF02239_consen   75 KVG-GNPRGIAVSPDGKYVYVANYEP--GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE  151 (369)
T ss_dssp             E-S-SEEEEEEE--TTTEEEEEEEET--TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred             ecC-CCcceEEEcCCCCEEEEEecCC--CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence            323 4799999999888999999876  47777765433222222211       1245567666566656667777899


Q ss_pred             EEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCe---EEEEeccCCCC
Q psy14258        241 IDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF---AIHIYHRQKQP  315 (440)
Q Consensus       241 i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~---~~~v~~~~~qp  315 (440)
                      |..+++.......+..-..-..|++..++.+  +++.+....+.|..++..+++....+.....|.   +..+.|+..  
T Consensus       152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~--  229 (369)
T PF02239_consen  152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF--  229 (369)
T ss_dssp             EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT--
T ss_pred             EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc--
Confidence            9999986543222211011357888888765  778888888899999987766555444333332   233455332  


Q ss_pred             CCCCCceeEEeecCC-ccEEEEEEcCCCC----CCceeeeeecCCCCceEEEEEcCCCEEEEE---ECCCCeEEEEecCC
Q psy14258        316 DALKPSTFLLYAKGK-PAIIKGLTFKRDG----TTEQAIMPITDLKRPSVIDYHEKEEYIYYA---ELTSYVIERRKMFG  387 (440)
Q Consensus       316 ~~~~~~~~l~~~~~~-~~~I~~i~~~~~~----~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~---d~~~~~I~r~~~~g  387 (440)
                            +-+..+... ...+..+..+...    ........+.....|..+..+|.+.+||+.   +...++|..++...
T Consensus       230 ------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  230 ------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             ------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             ------ceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence                  112222211 1223333332221    111233334434456889999999999887   45678899998875


Q ss_pred             CCeEEEEE--CCC-CCeeeEEEecCCCcEEEEeCCCC-eEEEEEeCCCe
Q psy14258        388 RGKEVVID--TGI-YNVEGMAVDWMANNLYWTDAGIG-TINVAKISDFS  432 (440)
Q Consensus       388 ~~~~~~~~--~~~-~~~~glAvD~~~~~lYwtd~~~~-~I~~~~~~g~~  432 (440)
                      -  +++..  .+- ..+..+.+...++.+|++....+ +|.+++....+
T Consensus       304 l--~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~  350 (369)
T PF02239_consen  304 L--KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK  350 (369)
T ss_dssp             T--EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred             c--ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence            3  33322  111 13889999999999999998887 99999987633

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.98  E-value=3.2e-06  Score=82.58  Aligned_cols=324  Identities=9%  Similarity=-0.033  Sum_probs=174.7

Q ss_pred             eEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccc
Q psy14258         48 THLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRP  127 (440)
Q Consensus        48 ~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v  127 (440)
                      +++++.+..   ++|..++.......-.++....-..++.+.+.++++|.++.+ +.|..+++....  .+      .. 
T Consensus         7 l~~V~~~~~---~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd-g~vsviD~~~~~--~v------~~-   73 (369)
T PF02239_consen    7 LFYVVERGS---GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD-GTVSVIDLATGK--VV------AT-   73 (369)
T ss_dssp             EEEEEEGGG---TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT-SEEEEEETTSSS--EE------EE-
T ss_pred             EEEEEecCC---CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC-CeEEEEECCccc--EE------EE-
Confidence            344555443   448888887665553444322213457788888999999864 677776665332  11      11 


Q ss_pred             eeeccccccce-eeeecCCcEEEe----ceEEEEecCCceE-EEEEcCCC------CCceEEEEcCCCCeEEEEEcCCCC
Q psy14258        128 MLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHC-MIAIDLNL------SKPRGIALDPTSGYMFFTKWGATR  195 (440)
Q Consensus       128 ~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~-~~~~~~~~------~~P~~iavd~~~g~lywtd~~~~~  195 (440)
                       + .....|.+ |+.+.++.+|++    +.+.+.+...-.. +.+-....      ..+.+|...|. +..|+...... 
T Consensus        74 -i-~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~-~~~fVv~lkd~-  149 (369)
T PF02239_consen   74 -I-KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG-RPEFVVNLKDT-  149 (369)
T ss_dssp             -E-E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS-SSEEEEEETTT-
T ss_pred             -E-ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC-CCEEEEEEccC-
Confidence             2 33457999 999999999988    7888887655333 33322211      23457766664 45455554443 


Q ss_pred             CcEEEEeCCCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeee--EecC
Q psy14258        196 PMLERSLLDGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDIT--VFEN  271 (440)
Q Consensus       196 ~~I~r~~~dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~--~~~~  271 (440)
                      ++|+..+........... ..-..|.+..+|+.+.++|.+....+.|-.++........+.. +. ..+|..++  .+-+
T Consensus       150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~-~p~~~~~~~~php~  228 (369)
T PF02239_consen  150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK-KPHPGPGANFPHPG  228 (369)
T ss_dssp             TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS-SBEETTEEEEEETT
T ss_pred             CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc-cccccccccccCCC
Confidence            799999976543222211 1245799999998888888888888899999876554443333 32 44543333  2222


Q ss_pred             -EEEEEecCC--CeEEEEe--------ccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEee---cCCccEEEE
Q psy14258        272 -NLFVTSWRN--QSIIRVN--------KFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYA---KGKPAIIKG  336 (440)
Q Consensus       272 -~ly~td~~~--~~i~~~~--------~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~---~~~~~~I~~  336 (440)
                       -.+|+....  ..+-.+.        ..+-+....+.....|..++. |         |+ .+|++.   ......|..
T Consensus       229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~t-h---------P~s~~vwvd~~~~~~~~~v~v  298 (369)
T PF02239_consen  229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKT-H---------PDSRYVWVDTFLNPDADTVQV  298 (369)
T ss_dssp             TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE------------TT-SEEEEE-TT-SSHT-EEE
T ss_pred             cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeec-C---------CCCccEEeeccCCCCCceEEE
Confidence             344543322  1111121        112222333333333433322 2         34 566665   233567888


Q ss_pred             EEcCCCCCCceeeeeecCC--CCceEEEEEcCCCEEEEEECCCC-eEEEEecCCCCeEEEEECCCCCeeeEE
Q psy14258        337 LTFKRDGTTEQAIMPITDL--KRPSVIDYHEKEEYIYYAELTSY-VIERRKMFGRGKEVVIDTGIYNVEGMA  405 (440)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~--~~p~~l~~d~~~~~vy~~d~~~~-~I~r~~~~g~~~~~~~~~~~~~~~glA  405 (440)
                      |+....    +....+...  ..+.-++|++++.++|++....+ .|..++...-.....+.  +..|.|+-
T Consensus       299 iD~~tl----~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f  364 (369)
T PF02239_consen  299 IDKKTL----KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTGKF  364 (369)
T ss_dssp             EECCGT----EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE----SEEEEE
T ss_pred             EECcCc----ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCeEe
Confidence            887665    444444321  23778999999999999998887 99999888654433344  67898875

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.95  E-value=2.3e-07  Score=84.68  Aligned_cols=190  Identities=15%  Similarity=0.072  Sum_probs=115.3

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-----ceEEE
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-----EAIYF  155 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-----~~I~~  155 (440)
                      ++.||+|++.+++||-.....+.|+.++++|.-++.         +.+ .++..++| ++  +++..|+.     +++..
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~---------i~l-~g~~D~EgI~y--~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRR---------IPL-DGFGDYEGITY--LGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEE---------EE--SS-SSEEEEEE---STTEEEEEETTTTEEEE
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEE---------EeC-CCCCCceeEEE--ECCCEEEEEEcCCCcEEE
Confidence            399999999999999998888888888776543322         223 45778888 76  56667776     56666


Q ss_pred             EecC--Cce--E---EEEE-c-C--CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC--CCCCceeEEe-------cC
Q psy14258        156 CTHY--MEH--C---MIAI-D-L--NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL--DGTERFPMVT-------HK  215 (440)
Q Consensus       156 ~~~d--g~~--~---~~~~-~-~--~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~--dG~~~~~l~~-------~~  215 (440)
                      ...+  +..  .   +.+- . .  .-....|||.||.++.||.+..... .+|...+.  .+........       ..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccce
Confidence            6652  221  1   1111 1 1  1123799999999999999876542 35777766  2222222211       12


Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec--C-----CccCceeeeeEecC-EEEEEecCCCeEEE
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK--G-----FPVQNLYDITVFEN-NLFVTSWRNQSIIR  285 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~--~-----~~~~~p~gl~~~~~-~ly~td~~~~~i~~  285 (440)
                      +..|.++++|+.++.||+-.....+|..++.+|.-+..+.-  +     ..+++|.||+++.+ .||++.-. +..++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~  246 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYR  246 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEE
Confidence            55799999999999999999999999999988875554432  1     23578999999976 99998853 34444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.94  E-value=9.2e-07  Score=80.79  Aligned_cols=200  Identities=16%  Similarity=0.103  Sum_probs=115.2

Q ss_pred             cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCC-Cce
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNS-DDY  294 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g-~~~  294 (440)
                      ..++|||.++.+++||.+..+...|..++.+|.-.+.+.-. .+..|.||++-++ .+..++-..+.++.+..... +..
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~-g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLD-GFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-S-S-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCC-CCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            34899999999999999998999999999998776666543 2778999999876 55666766777777765322 111


Q ss_pred             E-----EEe-cCC-----CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceee--ee----ecCCCC
Q psy14258        295 E-----TIA-NFS-----RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAI--MP----ITDLKR  357 (440)
Q Consensus       295 ~-----~~~-~~~-----~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~--~~----~~~~~~  357 (440)
                      .     .+. ...     ..-|++... .       .+.++++-...+..|+.+........-...  ..    ......
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~-~-------~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDP-K-------TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEET-T-------TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             chhhceEEecccccCCCcceEEEEEcC-C-------CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            1     111 111     123444331 1       123444444445677777752210110000  01    113447


Q ss_pred             ceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-CC-------CCCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258        358 PSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID-TG-------IYNVEGMAVDWMANNLYWTDAGIGTINVAK  427 (440)
Q Consensus       358 p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~~-------~~~~~glAvD~~~~~lYwtd~~~~~I~~~~  427 (440)
                      |++++||+..+.+|+-+..+..|..++.+|.......- .+       +..|+|||+|. .|+||++.- -|...+++
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE-pNlfy~f~  248 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE-PNLFYRFE  248 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET-TTEEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC-CceEEEeC
Confidence            89999999999999999999999999999865444432 22       45799999996 679999975 45666653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.88  E-value=3.1e-06  Score=83.63  Aligned_cols=278  Identities=12%  Similarity=-0.035  Sum_probs=162.4

Q ss_pred             cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeec------CCcEEEe
Q psy14258         78 TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMV------THKIVYP  150 (440)
Q Consensus        78 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~------~~~lY~~  150 (440)
                      +..  |.+|++.+. +++|++....++|+++...+.....+   ...+.+....+...+-+ |+++.      ++.||++
T Consensus        29 L~~--Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~---~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        29 LNK--PWALLWGPD-NQLWVTERATGKILRVNPETGEVKVV---FTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             CCC--ceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeee---ecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence            555  999999986 68999998778888876443221111   11122211124567888 99854      4679987


Q ss_pred             -------------ceEEEEecCCc-----eEEEEEcC----CCCCceEEEEcCCCCeEEEEEcCC---------------
Q psy14258        151 -------------EAIYFCTHYME-----HCMIAIDL----NLSKPRGIALDPTSGYMFFTKWGA---------------  193 (440)
Q Consensus       151 -------------~~I~~~~~dg~-----~~~~~~~~----~~~~P~~iavd~~~g~lywtd~~~---------------  193 (440)
                                   .+|.|..++..     ..++|+..    ..+.-..|+++| .|+||++--..               
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ  181 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQ  181 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhc
Confidence                         25777776531     23444431    224567899999 68999984322               


Q ss_pred             ---------------CCCcEEEEeCCCCC----------ceeEEecCccCceEEEEeCCCCEEEEEeCCCC---cEEEEE
Q psy14258        194 ---------------TRPMLERSLLDGTE----------RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD---FIDRIN  245 (440)
Q Consensus       194 ---------------~~~~I~r~~~dG~~----------~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~---~i~~~~  245 (440)
                                     ..++|.|.+.||+.          +.++..-.++.|.||++|+ +++||.+|.+.+   .|..+.
T Consensus       182 ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~~~DEiN~I~  260 (454)
T TIGR03606       182 HTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPNSDDELNIIV  260 (454)
T ss_pred             cccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCCCCcEEEEec
Confidence                           12479999999973          3467777899999999997 899999998764   333332


Q ss_pred             ccCCCcEEEecCCccCcee--eeeEecCEE-------------------------------------------EEEecCC
Q psy14258        246 YDGTDRKTIRKGFPVQNLY--DITVFENNL-------------------------------------------FVTSWRN  280 (440)
Q Consensus       246 ~dG~~~~~i~~~~~~~~p~--gl~~~~~~l-------------------------------------------y~td~~~  280 (440)
                                .+.....|.  |......+.                                           ||+-...
T Consensus       261 ----------~G~NYGWP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~~~~~~~  330 (454)
T TIGR03606       261 ----------KGGNYGWPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTLYTVQDT  330 (454)
T ss_pred             ----------cCCcCCCCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceeccccccc
Confidence                      111122222  110000000                                           2210000


Q ss_pred             CeEEEEeccCCCceEEE--ecCCCCeEEEEec--cCCCCCCCCCceeEEeecCCccEEEEEEcCCCC-CC-ceeeeeecC
Q psy14258        281 QSIIRVNKFNSDDYETI--ANFSRPFAIHIYH--RQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDG-TT-EQAIMPITD  354 (440)
Q Consensus       281 ~~i~~~~~~~g~~~~~~--~~~~~p~~~~v~~--~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~-~~-~~~~~~~~~  354 (440)
                       -.+ -+-..++ . ..  .....|.++.+|.  ...-|.   -++.|+++..+...++|+.+++.. .. .+....+..
T Consensus       331 -~~~-~~~~~~~-~-~~~~~psiapsg~~~y~~~g~~~p~---w~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~  403 (454)
T TIGR03606       331 -YNY-NDATCGE-M-TYICWPTIAPSSAYYYKGGEKGITG---WENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT  403 (454)
T ss_pred             -ccc-ccccccc-c-ccccCCCcCCceeEEEecCcccCcc---cCCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC
Confidence             000 0000000 0 01  1222577888885  233332   357788887777899999998662 11 122223333


Q ss_pred             CCCceEEEEEcCCCEEEEEECCCCeE
Q psy14258        355 LKRPSVIDYHEKEEYIYYAELTSYVI  380 (440)
Q Consensus       355 ~~~p~~l~~d~~~~~vy~~d~~~~~I  380 (440)
                      ..+.+.|+..|+++.||+.....+.+
T Consensus       404 ~~RiRdv~~~pDg~~iy~~td~~g~~  429 (454)
T TIGR03606       404 NNRYRDVIASPDGNVLYVATDNFGNV  429 (454)
T ss_pred             CCeeEEEEECCCCCEEEEEEcCCCcc
Confidence            56889999999877999975455554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.81  E-value=1.1e-05  Score=77.51  Aligned_cols=234  Identities=11%  Similarity=0.092  Sum_probs=135.7

Q ss_pred             CeEEEEEcCCC--CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC---------CCCcEEEEEcc-CCCc
Q psy14258        184 GYMFFTKWGAT--RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT---------YLDFIDRINYD-GTDR  251 (440)
Q Consensus       184 g~lywtd~~~~--~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~---------~~~~i~~~~~d-G~~~  251 (440)
                      .++|++|....  .++|.+.+.+.......+.. -..|.++ +.+.++.||++..         ..+.|..+|.. +...
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~-G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDG-GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEc-cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            56888887620  14788888765443333332 3579997 9999999999999         78899999864 3333


Q ss_pred             EEEecCC-----ccCceeeeeEe--cCEEEEEecC-CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCcee
Q psy14258        252 KTIRKGF-----PVQNLYDITVF--ENNLFVTSWR-NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       252 ~~i~~~~-----~~~~p~gl~~~--~~~ly~td~~-~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      ..+..+.     ....|..+++.  +.+||++++. .+.|..+|..+++....+.-   |..-.+|-...      ...+
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v---p~~~~vy~t~e------~~~~  161 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV---PDCYHIFPTAN------DTFF  161 (352)
T ss_pred             eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC---CCCcEEEEecC------CccE
Confidence            4443321     13345456655  4599999977 89999999987766553332   22222331110      0122


Q ss_pred             EEeecCCccEEEEEEcCCCCCCceeeeeecC------CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE---
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPITD------LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI---  394 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~------~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~---  394 (440)
                      ++..|   ++...+.++..+.......++-.      +.+|   .|.+.++..+|.... ++|+.+++.+...+...   
T Consensus       162 ~~~~D---g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       162 MHCRD---GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             EEeec---CceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceee
Confidence            23333   33444444444221112223211      2466   455534555565554 99999998764322111   


Q ss_pred             --ECCC----CCeee---EEEecCCCcEEEE-eCC--------CCeEEEEEeCCCeeeE
Q psy14258        395 --DTGI----YNVEG---MAVDWMANNLYWT-DAG--------IGTINVAKISDFSIRK  435 (440)
Q Consensus       395 --~~~~----~~~~g---lAvD~~~~~lYwt-d~~--------~~~I~~~~~~g~~~~~  435 (440)
                        ..+.    =.|.|   +|++..+++||++ +..        .+.|.+++....+..+
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~  293 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR  293 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence              1110    13444   9999999999995 322        3689999987644333

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1520|consensus

Probab=98.69  E-value=1.5e-06  Score=82.06  Aligned_cols=173  Identities=12%  Similarity=0.016  Sum_probs=117.8

Q ss_pred             ccEEEEEEcCCCCceeEEeCCCCCcceeeccccc--cceeeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEE
Q psy14258         92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT--RPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMI  165 (440)
Q Consensus        92 ~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~  165 (440)
                      ++-|+|+-...+.+-.+...-+....    ....  ......--+.|-| |++..+++||++   --+++.+..|...+.
T Consensus        75 g~il~~~g~~~Gwv~~~~~~~s~~~~----~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~  150 (376)
T KOG1520|consen   75 GRILKYTGNDDGWVKFADTKDSTNRS----QCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAEL  150 (376)
T ss_pred             CceEEEeccCceEEEEEecccccccc----ccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCccee
Confidence            35568887766666555542111111    0111  1112233579999 999999999999   568888998887655


Q ss_pred             EEcCC----CCCceEEEEcCCCCeEEEEEcCCC---------------CCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        166 AIDLN----LSKPRGIALDPTSGYMFFTKWGAT---------------RPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       166 ~~~~~----~~~P~~iavd~~~g~lywtd~~~~---------------~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                      +....    .....++.||+ +|.+||||....               .+|+.+.+..-...++ +.+++..|||+++.+
T Consensus       151 l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~V-Lld~L~F~NGlaLS~  228 (376)
T KOG1520|consen  151 LADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKV-LLDGLYFPNGLALSP  228 (376)
T ss_pred             ccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhh-hhhcccccccccCCC
Confidence            54432    34567999999 899999996542               2455555554443333 345789999999999


Q ss_pred             CCCEEEEEeCCCCcEEEEEccCCCc---EEEecCCccCceeeeeEecC
Q psy14258        227 PTKHVYWVDTYLDFIDRINYDGTDR---KTIRKGFPVQNLYDITVFEN  271 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~dG~~~---~~i~~~~~~~~p~gl~~~~~  271 (440)
                      .+..+.+++....+|.++-+.|...   +.+.++- -..|--|...++
T Consensus       229 d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~L-PG~PDNIR~~~~  275 (376)
T KOG1520|consen  229 DGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGL-PGYPDNIRRDST  275 (376)
T ss_pred             CCCEEEEEeeccceeeeeEecCCccCchhhHhhcC-CCCCcceeECCC
Confidence            9999999999999999999998776   5555531 246777776655

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.67  E-value=7.9e-06  Score=73.32  Aligned_cols=237  Identities=17%  Similarity=0.106  Sum_probs=154.3

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR  251 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~  251 (440)
                      ..|..++.+| .|.+++++.+.  +.|-+.+......+..--..-.+|.|+.++ ..+..+++|... .|.+++......
T Consensus        62 ~ap~dvapap-dG~VWft~qg~--gaiGhLdP~tGev~~ypLg~Ga~Phgiv~g-pdg~~Witd~~~-aI~R~dpkt~ev  136 (353)
T COG4257          62 SAPFDVAPAP-DGAVWFTAQGT--GAIGHLDPATGEVETYPLGSGASPHGIVVG-PDGSAWITDTGL-AIGRLDPKTLEV  136 (353)
T ss_pred             CCccccccCC-CCceEEecCcc--ccceecCCCCCceEEEecCCCCCCceEEEC-CCCCeeEecCcc-eeEEecCcccce
Confidence            5799999999 69999999886  588888876544444433446789999999 556788899776 888887643333


Q ss_pred             EEEecCCccCce----eeeeEec-CEEEEEecCCCeEEEEeccCCCceEEE-ec-CCCCeEEEEeccCCCCCCCCCceeE
Q psy14258        252 KTIRKGFPVQNL----YDITVFE-NNLFVTSWRNQSIIRVNKFNSDDYETI-AN-FSRPFAIHIYHRQKQPDALKPSTFL  324 (440)
Q Consensus       252 ~~i~~~~~~~~p----~gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~~-~~-~~~p~~~~v~~~~~qp~~~~~~~~l  324 (440)
                      +.....  ..++    ....++. ++|++|.. .+.--+.|...+. ..++ .. ...|+++.+-          |++.+
T Consensus       137 t~f~lp--~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~-i~vfpaPqG~gpyGi~at----------pdGsv  202 (353)
T COG4257         137 TRFPLP--LEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNV-ISVFPAPQGGGPYGICAT----------PDGSV  202 (353)
T ss_pred             EEeecc--cccCCCcccceeeCCCccEEEeec-cccceecCcccCc-eeeeccCCCCCCcceEEC----------CCCcE
Confidence            333221  2222    2233443 38888875 4444466665432 2232 22 2357777666          78899


Q ss_pred             EeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC-eEEEEECCCCCeee
Q psy14258        325 LYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG-KEVVIDTGIYNVEG  403 (440)
Q Consensus       325 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~-~~~~~~~~~~~~~g  403 (440)
                      +|+..-.+.|-+|+.-.. ..+.+..|-.--..-+.+-.|+. ++++.++...++++|+++.-+. ++--+...-..|..
T Consensus       203 wyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpi-g~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys  280 (353)
T COG4257         203 WYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPI-GRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYS  280 (353)
T ss_pred             EEEeccccceEEcccccC-CcceecCCCcccccccccccCcc-CcEEEeccCCceeeEeCcccccceeeeCCCCCCCcce
Confidence            999655578888875443 33322222111123346667876 5699999999999999987543 22222222246899


Q ss_pred             EEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        404 MAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       404 lAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      |-||- .++++..|.+.+.|.+++...
T Consensus       281 ~rVD~-~grVW~sea~agai~rfdpet  306 (353)
T COG4257         281 MRVDR-HGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             eeecc-CCcEEeeccccCceeecCccc
Confidence            99995 556888899999999998875

>KOG1520|consensus

Probab=98.65  E-value=1.6e-06  Score=81.81  Aligned_cols=161  Identities=16%  Similarity=0.223  Sum_probs=114.3

Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec---CCccCceeeeeEec-CEEEEEecCCCeEEEEeccCC
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK---GFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNS  291 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~---~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g  291 (440)
                      .++|-||+++..++.||+||+..+ +..++..|...+.+..   +..+....++.+.. +.|||||..+.       ++-
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk-------~~~  185 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSK-------YDR  185 (376)
T ss_pred             cCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccc-------cch
Confidence            589999999999999999998775 8888888877555543   33455566788775 59999997531       111


Q ss_pred             CceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEE
Q psy14258        292 DDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY  371 (440)
Q Consensus       292 ~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy  371 (440)
                      ....                           +.++.-...+++.+.+....    ...+.+.++.-|.|++..+++.++.
T Consensus       186 rd~~---------------------------~a~l~g~~~GRl~~YD~~tK----~~~VLld~L~F~NGlaLS~d~sfvl  234 (376)
T KOG1520|consen  186 RDFV---------------------------FAALEGDPTGRLFRYDPSTK----VTKVLLDGLYFPNGLALSPDGSFVL  234 (376)
T ss_pred             hheE---------------------------EeeecCCCccceEEecCccc----chhhhhhcccccccccCCCCCCEEE
Confidence            0000                           01111112367766666555    3445667788899999999999999


Q ss_pred             EEECCCCeEEEEecCCCCe---EEEEECCCCCeeeEEEecCCCcEEEE
Q psy14258        372 YAELTSYVIERRKMFGRGK---EVVIDTGIYNVEGMAVDWMANNLYWT  416 (440)
Q Consensus       372 ~~d~~~~~I~r~~~~g~~~---~~~~~~~~~~~~glAvD~~~~~lYwt  416 (440)
                      ++++...+|.|.-+.|...   |++++.=-+.|+.|..|. .|+.|++
T Consensus       235 ~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~-~G~fWVa  281 (376)
T KOG1520|consen  235 VAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDS-TGHFWVA  281 (376)
T ss_pred             EEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECC-CCCEEEE
Confidence            9999999999999998654   777662236899999995 5555554

>KOG4499|consensus

Probab=98.64  E-value=9.9e-06  Score=71.04  Aligned_cols=197  Identities=13%  Similarity=0.116  Sum_probs=119.7

Q ss_pred             EEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeecccccc--ce-eeeecCC-cEEEe---ceEEEE
Q psy14258         84 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG--TE-RFPMVTH-KIVYP---EAIYFC  156 (440)
Q Consensus        84 ~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p--~~-avD~~~~-~lY~~---~~I~~~  156 (440)
                      .+..++..++.|||.|...+.+.|.++.......             ..+..|  .+ ++--.++ ..|.+   .+....
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~r-------------a~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~   84 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYR-------------AKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIV   84 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEE-------------EEEecCcceeEEEEecCCCceEEEeecceEEEE
Confidence            4556788889999999998888776554322211             111111  11 2211111 23333   344455


Q ss_pred             ecCCceEEEEEcCC---------CCCceEEEEcCCCCeEEEEEcCCC------CCcEEEEeCCCCCceeEEecCccCceE
Q psy14258        157 THYMEHCMIAIDLN---------LSKPRGIALDPTSGYMFFTKWGAT------RPMLERSLLDGTERFPMVTHKIVYPYG  221 (440)
Q Consensus       157 ~~dg~~~~~~~~~~---------~~~P~~iavd~~~g~lywtd~~~~------~~~I~r~~~dG~~~~~l~~~~~~~P~g  221 (440)
                      +.||.....++...         -.+-..=-+|| .|+-|--.....      .+...+..+-|-.. .++...+.-|||
T Consensus        85 nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~IsNg  162 (310)
T KOG4499|consen   85 NWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVGISNG  162 (310)
T ss_pred             EcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCCCc-eeeehhccCCcc
Confidence            67765433222211         12334556788 455565533221      12223333333332 344556788999


Q ss_pred             EEEeCCCCEEEEEeCCCCcEEEEEcc--C---CCcEEEec---CC--ccCceeeeeEecC-EEEEEecCCCeEEEEeccC
Q psy14258        222 VTVDFPTKHVYWVDTYLDFIDRINYD--G---TDRKTIRK---GF--PVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFN  290 (440)
Q Consensus       222 l~vD~~~~~ly~~d~~~~~i~~~~~d--G---~~~~~i~~---~~--~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~  290 (440)
                      |+.|......|++|+.+-.|...++|  +   ++++.+..   .+  .-..|-|++++.+ +||++-|..++|+++++.+
T Consensus       163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t  242 (310)
T KOG4499|consen  163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT  242 (310)
T ss_pred             ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC
Confidence            99999999999999999999777754  2   46666654   11  1345789999865 9999999999999999999


Q ss_pred             CCceE
Q psy14258        291 SDDYE  295 (440)
Q Consensus       291 g~~~~  295 (440)
                      |+-..
T Consensus       243 GK~L~  247 (310)
T KOG4499|consen  243 GKILL  247 (310)
T ss_pred             CcEEE
Confidence            98765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=0.00011  Score=73.27  Aligned_cols=237  Identities=8%  Similarity=0.017  Sum_probs=133.1

Q ss_pred             eeecCCcEEEe-------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCe-EEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        140 FPMVTHKIVYP-------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGY-MFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       140 vD~~~~~lY~~-------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~-lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                      .++.++.+|++       .+|.+++.||.+.+++....  .-..-...|...+ +|++......+.|++.++.+..++.+
T Consensus       151 ~~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l  228 (419)
T PRK04043        151 IDWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI  228 (419)
T ss_pred             cCceeeEEEEEEccCCCcceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE
Confidence            34567888887       37999999999988776643  2234555665443 77776653227999999988777766


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEecc
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKF  289 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~  289 (440)
                      .... .......+.+.+.+|.++....  ..|+.+++++...+.+.........-..+-++..||++....+        
T Consensus       229 t~~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g--------  299 (419)
T PRK04043        229 ASSQ-GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG--------  299 (419)
T ss_pred             ecCC-CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC--------
Confidence            5422 2222345677787887765433  4788888777665555432111111112223445555432110        


Q ss_pred             CCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCE
Q psy14258        290 NSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEY  369 (440)
Q Consensus       290 ~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~  369 (440)
                                                               ...|+++++++. ...  .+...+...   .+++|+++.
T Consensus       300 -----------------------------------------~~~Iy~~dl~~g-~~~--rlt~~g~~~---~~~SPDG~~  332 (419)
T PRK04043        300 -----------------------------------------YPNIFMKKLNSG-SVE--QVVFHGKNN---SSVSTYKNY  332 (419)
T ss_pred             -----------------------------------------CceEEEEECCCC-CeE--eCccCCCcC---ceECCCCCE
Confidence                                                     123333333332 000  000001111   245666666


Q ss_pred             EEEEECCC--------CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258        370 IYYAELTS--------YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       370 vy~~d~~~--------~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l  437 (440)
                      |.++....        ..|+.+++++...+.+...+.  -+..++.+.++.||++..  +...+..++++| ...+.|
T Consensus       333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l  407 (419)
T PRK04043        333 IVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLF  407 (419)
T ss_pred             EEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEe
Confidence            65554322        478888887765555544322  234667777998988853  455699999999 444434

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.55  E-value=1.7e-07  Score=61.03  Aligned_cols=39  Identities=38%  Similarity=0.871  Sum_probs=36.0

Q ss_pred             EEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        392 VVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       392 ~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +++..++..|.|||+||.+++|||+|...+.|++++++|
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            345668899999999999999999999999999999999

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=0.00015  Score=73.02  Aligned_cols=235  Identities=10%  Similarity=0.001  Sum_probs=131.0

Q ss_pred             cCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec
Q psy14258        143 VTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH  214 (440)
Q Consensus       143 ~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~  214 (440)
                      .++-.|++        .+|.+++.+|.+.+.+... -......+..|...+|+|+........|+..++++...+.+...
T Consensus       182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~-~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~  260 (448)
T PRK04792        182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRS-PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF  260 (448)
T ss_pred             cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecC-CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC
Confidence            35555665        2688889999887766542 23345677888777888876543236899999988766555332


Q ss_pred             CccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEecCCCeEEEEeccC
Q psy14258        215 KIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFN  290 (440)
Q Consensus       215 ~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~~~~i~~~~~~~  290 (440)
                      . ......++.+.+.+|+++....+  .|+.+++++...+.+....  ......++  ++..|+++....+         
T Consensus       261 ~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~--~~~~~p~wSpDG~~I~f~s~~~g---------  328 (448)
T PRK04792        261 P-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR--AIDTEPSWHPDGKSLIFTSERGG---------  328 (448)
T ss_pred             C-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC--CCccceEECCCCCEEEEEECCCC---------
Confidence            2 12235678888888887643333  5777777766554443321  11111122  2223433321100         


Q ss_pred             CCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258        291 SDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI  370 (440)
Q Consensus       291 g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v  370 (440)
                                                              ...|+.+++++. ..  ..+...+ ......++.++++++
T Consensus       329 ----------------------------------------~~~Iy~~dl~~g-~~--~~Lt~~g-~~~~~~~~SpDG~~l  364 (448)
T PRK04792        329 ----------------------------------------KPQIYRVNLASG-KV--SRLTFEG-EQNLGGSITPDGRSM  364 (448)
T ss_pred             ----------------------------------------CceEEEEECCCC-CE--EEEecCC-CCCcCeeECCCCCEE
Confidence                                                    112333333222 00  0010011 112234678888899


Q ss_pred             EEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258        371 YYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       371 y~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l  437 (440)
                      |++...  ...|+++++++...+.+.....  .+..++.+.++.|+++..  +...+.+++++| ...+.|
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~~~~l  432 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQVLTSTRL--DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RFKARL  432 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeEEccCCCC--CCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEC
Confidence            888653  3478889988765544433222  223467777999988754  345688999999 444443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.49  E-value=0.00057  Score=67.84  Aligned_cols=110  Identities=17%  Similarity=0.164  Sum_probs=70.3

Q ss_pred             EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE------ec-CccCceEEEEeCC------CCEE
Q psy14258        165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV------TH-KIVYPYGVTVDFP------TKHV  231 (440)
Q Consensus       165 ~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~------~~-~~~~P~gl~vD~~------~~~l  231 (440)
                      .++.++|..|.+|++.| .|.||+++...  ++|.+.+.++...+.+.      .. ...-+.||++++.      ++.|
T Consensus        23 ~~va~GL~~Pw~maflP-DG~llVtER~~--G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        23 KVLLSGLNKPWALLWGP-DNQLWVTERAT--GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             EEEECCCCCceEEEEcC-CCeEEEEEecC--CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence            34456899999999999 68999999743  58999887654433221      11 2345789999854      4689


Q ss_pred             EEEeCC---------CCcEEEEEccCC-----CcEEEecCC---ccCceeeeeEecC-EEEEEe
Q psy14258        232 YWVDTY---------LDFIDRINYDGT-----DRKTIRKGF---PVQNLYDITVFEN-NLFVTS  277 (440)
Q Consensus       232 y~~d~~---------~~~i~~~~~dG~-----~~~~i~~~~---~~~~p~gl~~~~~-~ly~td  277 (440)
                      |++-..         ..+|.++.++..     +.+.++.+.   ..+.--.|++..| .||++-
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~  163 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTI  163 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEE
Confidence            988522         457888887632     234454421   1122235666544 899864

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.44  E-value=5.3e-07  Score=58.65  Aligned_cols=42  Identities=36%  Similarity=0.719  Sum_probs=36.9

Q ss_pred             EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       165 ~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      +++...+..|.|||+|+.+++|||+|+..  ..|++++++|+++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~--~~I~~~~~~g~~~   43 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGL--DVIEVANLDGTNR   43 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCC--CEEEEEeCCCCCC
Confidence            34556889999999999999999999997  5999999999863

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=0.00033  Score=70.31  Aligned_cols=236  Identities=11%  Similarity=0.075  Sum_probs=132.6

Q ss_pred             ecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc
Q psy14258        142 MVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI  216 (440)
Q Consensus       142 ~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~  216 (440)
                      |.++..|++     .+|..++.+|...+.+.... ..-...+..|...+|+++......+.|+..++++..++.+.... 
T Consensus       162 f~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-  239 (427)
T PRK02889        162 FSTRIAYVIKTGNRYQLQISDADGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-  239 (427)
T ss_pred             cccEEEEEEccCCccEEEEECCCCCCceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-
Confidence            346666666     46899999998877665422 33456788887778887765432368999999877665553222 


Q ss_pred             cCceEEEEeCCCCEEEEEeCC--CCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC--CCeEEEEeccCCC
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTY--LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQSIIRVNKFNSD  292 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~--~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~~i~~~~~~~g~  292 (440)
                      ......++.+.+.+|+++-..  ...|+.++.++...+.+............+-++..|+++...  ...|+.++..   
T Consensus       240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~---  316 (427)
T PRK02889        240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS---  316 (427)
T ss_pred             CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC---
Confidence            233467788888888875433  336777777776655443321011101111122233332110  0111111110   


Q ss_pred             ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEE
Q psy14258        293 DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYY  372 (440)
Q Consensus       293 ~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~  372 (440)
                                                          +  +...++...+.              .....++.++++.|++
T Consensus       317 ------------------------------------~--g~~~~lt~~g~--------------~~~~~~~SpDG~~Ia~  344 (427)
T PRK02889        317 ------------------------------------G--GAAQRVTFTGS--------------YNTSPRISPDGKLLAY  344 (427)
T ss_pred             ------------------------------------C--CceEEEecCCC--------------CcCceEECCCCCEEEE
Confidence                                                0  11222221111              1123467777888887


Q ss_pred             EECCC--CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258        373 AELTS--YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       373 ~d~~~--~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l  437 (440)
                      +....  ..|+..++++.....+...  ...+..++.+.++.||++..  +...+.+++++| ...+.|
T Consensus       345 ~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l  410 (427)
T PRK02889        345 ISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRL  410 (427)
T ss_pred             EEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEe
Confidence            76433  3688888877555444432  23356788888998888853  345688889999 444444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.41  E-value=0.00037  Score=69.99  Aligned_cols=239  Identities=10%  Similarity=0.038  Sum_probs=133.9

Q ss_pred             eeeecCCcEEEe---------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce
Q psy14258        139 RFPMVTHKIVYP---------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF  209 (440)
Q Consensus       139 avD~~~~~lY~~---------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~  209 (440)
                      ...+.++.+|++         .+|.+++.+|...+.+.... ......+..|...+|+++......+.|++.++++...+
T Consensus       158 ~g~f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~  236 (430)
T PRK00178        158 KGAFSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE  236 (430)
T ss_pred             CccceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE
Confidence            344566667766         15888999998876665432 33467788887778877654433368999999877666


Q ss_pred             eEEecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEecCCCeEEE
Q psy14258        210 PMVTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIR  285 (440)
Q Consensus       210 ~l~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~~~~i~~  285 (440)
                      .+.... ......++.+.+++|+++-...  ..|+.+++++...+.+....  ......++  +++.||++....+    
T Consensus       237 ~l~~~~-g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~--~~~~~~~~spDg~~i~f~s~~~g----  309 (430)
T PRK00178        237 QITNFE-GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP--AIDTEPFWGKDGRTLYFTSDRGG----  309 (430)
T ss_pred             EccCCC-CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC--CCcCCeEECCCCCEEEEEECCCC----
Confidence            554322 2223467787888888764333  36777887776555443321  01111111  2223433321100    


Q ss_pred             EeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc
Q psy14258        286 VNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE  365 (440)
Q Consensus       286 ~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~  365 (440)
                                                                   ...|+.+++++. ...  .+...+ ......++.+
T Consensus       310 ---------------------------------------------~~~iy~~d~~~g-~~~--~lt~~~-~~~~~~~~Sp  340 (430)
T PRK00178        310 ---------------------------------------------KPQIYKVNVNGG-RAE--RVTFVG-NYNARPRLSA  340 (430)
T ss_pred             ---------------------------------------------CceEEEEECCCC-CEE--EeecCC-CCccceEECC
Confidence                                                         012222222221 000  000000 1112345678


Q ss_pred             CCCEEEEEECCC--CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258        366 KEEYIYYAELTS--YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       366 ~~~~vy~~d~~~--~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l  437 (440)
                      .++.|+++....  ..|+.+++.+...+.+...+  ..+..++.+.++.|+++..  +...|..++++| ...+.|
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l  413 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPL  413 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEC
Confidence            888888886433  36888898876555544322  2334577788999999864  456799999999 434333

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.41  E-value=0.0016  Score=62.89  Aligned_cols=304  Identities=10%  Similarity=-0.012  Sum_probs=161.1

Q ss_pred             ccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccceeeeecCCcEEEeceEEEEecCCceEEEEEcCCC
Q psy14258         92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNL  171 (440)
Q Consensus        92 ~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~avD~~~~~lY~~~~I~~~~~dg~~~~~~~~~~~  171 (440)
                      ..-||+.+..++.+.|+..-|.....+.+-..+..+++.++...|-.    .-..||      +.+.||...+.+   .+
T Consensus       106 taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~----q~~~lY------kv~~dg~~~e~L---nl  172 (668)
T COG4946         106 TADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFS----QWTELY------KVNVDGIKTEPL---NL  172 (668)
T ss_pred             cccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcc----cceeee------EEccCCceeeec---cC
Confidence            35589999999999998877765555544444455555555655542    011233      455666544333   23


Q ss_pred             CCceEEEEcCCCCeEEEE----------EcC-CCCCcEEEEeCCCCCceeEEec--CccCceEEEEeCCCCEEEEEeCC-
Q psy14258        172 SKPRGIALDPTSGYMFFT----------KWG-ATRPMLERSLLDGTERFPMVTH--KIVYPYGVTVDFPTKHVYWVDTY-  237 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywt----------d~~-~~~~~I~r~~~dG~~~~~l~~~--~~~~P~gl~vD~~~~~ly~~d~~-  237 (440)
                      .--..|.+  ..|.++..          ... ...+.|+...-.|...+.++.-  .+.+|  +.+   ++|+|+.... 
T Consensus       173 Gpathiv~--~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~P--mIV---~~RvYFlsD~e  245 (668)
T COG4946         173 GPATHIVI--KDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSP--MIV---GERVYFLSDHE  245 (668)
T ss_pred             CceeeEEE--eCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCc--eEE---cceEEEEeccc
Confidence            32333333  23444433          221 1246777777777677777653  45566  343   7899986543 


Q ss_pred             -CCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEe--cCC-CCeEEEEeccCC
Q psy14258        238 -LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA--NFS-RPFAIHIYHRQK  313 (440)
Q Consensus       238 -~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~--~~~-~p~~~~v~~~~~  313 (440)
                       .+.|++++++|.+.+.-..- .-..|.-+.-++.+|.+..  .+.|+..++.+.+-..+--  .+. .+..-+++.|+.
T Consensus       246 G~GnlYSvdldGkDlrrHTnF-tdYY~R~~nsDGkrIvFq~--~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psk  322 (668)
T COG4946         246 GVGNLYSVDLDGKDLRRHTNF-TDYYPRNANSDGKRIVFQN--AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSK  322 (668)
T ss_pred             CccceEEeccCCchhhhcCCc-hhccccccCCCCcEEEEec--CCcEEEeCCCcCcceeeecCCccccccccccccCHHH
Confidence             45999999999876543220 0234555555555665543  4556656654433222111  111 111111222111


Q ss_pred             CCC--CCCCce-eEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCce--EEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        314 QPD--ALKPST-FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       314 qp~--~~~~~~-~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~--~l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                      ...  ...+.. ..+++.   ++.+.++....     ..+++..-...+  -+..|+  +.+-+.+.....+-..+.+|.
T Consensus       323 yledfa~~~Gd~ia~VSR---GkaFi~~~~~~-----~~iqv~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~  392 (668)
T COG4946         323 YLEDFAVVNGDYIALVSR---GKAFIMRPWDG-----YSIQVGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGG  392 (668)
T ss_pred             hhhhhccCCCcEEEEEec---CcEEEECCCCC-----eeEEcCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCc
Confidence            100  000112 222221   44444443333     233333211111  222233  345555555668888888886


Q ss_pred             CeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        389 GKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       389 ~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ..+.+ ..++++.+.++++..++.+-.++. +..|.+++++.
T Consensus       393 e~kr~-e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididn  432 (668)
T COG4946         393 EVKRI-EKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDN  432 (668)
T ss_pred             eEEEe-eCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecC
Confidence            55555 558999999999988887777754 55677788776

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.39  E-value=0.00083  Score=61.29  Aligned_cols=195  Identities=14%  Similarity=0.105  Sum_probs=123.6

Q ss_pred             cCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEec-CCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCc
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRK-GFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD  293 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~  293 (440)
                      ..-.||.++ .++.||-+....+  .|.++++.......... .. -..-.||++.+|.||--.|.++..+..++.+-+.
T Consensus        45 aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccceE
Confidence            445789985 4789999886655  89999987654432222 21 2356899999999999999999999999976655


Q ss_pred             eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCc----eEEEEEcCCCE
Q psy14258        294 YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRP----SVIDYHEKEEY  369 (440)
Q Consensus       294 ~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p----~~l~~d~~~~~  369 (440)
                      ...+.-.....|+.-.           +..|+.+|+. .+++.+++..- . ....+.+..-..|    .-|.|  .++.
T Consensus       123 ~~~~~y~~EGWGLt~d-----------g~~Li~SDGS-~~L~~~dP~~f-~-~~~~i~V~~~g~pv~~LNELE~--i~G~  186 (264)
T PF05096_consen  123 IGTFPYPGEGWGLTSD-----------GKRLIMSDGS-SRLYFLDPETF-K-EVRTIQVTDNGRPVSNLNELEY--INGK  186 (264)
T ss_dssp             EEEEE-SSS--EEEEC-----------SSCEEEE-SS-SEEEEE-TTT--S-EEEEEE-EETTEE---EEEEEE--ETTE
T ss_pred             EEEEecCCcceEEEcC-----------CCEEEEECCc-cceEEECCccc-c-eEEEEEEEECCEECCCcEeEEE--EcCE
Confidence            5544333356778733           4568888874 67777775432 1 1112222222223    34655  4788


Q ss_pred             EEEEECCCCeEEEEecCCCCeEEEEEC---------------CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        370 IYYAELTSYVIERRKMFGRGKEVVIDT---------------GIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       370 vy~~d~~~~~I~r~~~~g~~~~~~~~~---------------~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      ||=--..+..|.|+++......-.+..               +.+-.+|||.|+.+++||+|--.=..+..+++.
T Consensus       187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence            865556789999999987655544430               123479999999999999996544566666554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.39  E-value=0.00017  Score=69.87  Aligned_cols=237  Identities=11%  Similarity=-0.021  Sum_probs=134.1

Q ss_pred             ccccccceeeeecCCcEEEeceEEEEecC-Cc----eEEEEEcC----CCCCceEEEEcCCCCeEEEEEcCC-------C
Q psy14258        131 RSLLDGTERFPMVTHKIVYPEAIYFCTHY-ME----HCMIAIDL----NLSKPRGIALDPTSGYMFFTKWGA-------T  194 (440)
Q Consensus       131 ~~~~~p~~avD~~~~~lY~~~~I~~~~~d-g~----~~~~~~~~----~~~~P~~iavd~~~g~lywtd~~~-------~  194 (440)
                      .+...|.+ +.+..+.+|.+.++.+..++ |.    ..++++..    ..+.-+.|+++| .|+||++-...       +
T Consensus       128 ~~~~~~~~-~a~~~~~~~~~n~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~  205 (399)
T COG2133         128 QGRLVYFG-ISEPGGGLYVANRVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDPALAQD  205 (399)
T ss_pred             ccceeeeE-EEeecCCceEEEEEEEEEcCCCccccccccEEeecCCCCCCcCcccEEECC-CCcEEEEeCCCCCcccccC
Confidence            44445554 22356667777555555554 31    12344431    245678899999 57999996443       1


Q ss_pred             ----CCcEEEEeC--------CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCc
Q psy14258        195 ----RPMLERSLL--------DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQN  262 (440)
Q Consensus       195 ----~~~I~r~~~--------dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~  262 (440)
                          .++|.|...        ++.+ ..+++.++..|.||++++.++.||.++.+.+.+    .-+.....+..+.....
T Consensus       206 ~~~~~Gk~~r~~~a~~~~~d~p~~~-~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~----~~~Deln~i~~G~nYGW  280 (399)
T COG2133         206 NVSLAGKVLRIDRAGIIPADNPFPN-SEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL----RGPDELNSIRPGKNYGW  280 (399)
T ss_pred             ccccccceeeeccCcccccCCCCCC-cceEEeccCCccceeecCCCCcEEEEecCCCcc----cCcccccccccCCccCC
Confidence                344555444        4444 346677889999999999999999999988766    22333333333433344


Q ss_pred             eeeeeEecCEEEEEecCCCeEEEE-eccCCC--ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEc
Q psy14258        263 LYDITVFENNLFVTSWRNQSIIRV-NKFNSD--DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTF  339 (440)
Q Consensus       263 p~gl~~~~~~ly~td~~~~~i~~~-~~~~g~--~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~  339 (440)
                      |+        .||..-..+....- ....+.  ....+..-..|.++++|.-..-|.   =.+-|+++....-.+.++.+
T Consensus       281 P~--------~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~---~r~~lfV~~hgsw~~~~~~~  349 (399)
T COG2133         281 PY--------AYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPA---YRGDLFVGAHGSWPVLRLRP  349 (399)
T ss_pred             ce--------eccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCcc---ccCcEEEEeecceeEEEecc
Confidence            43        22221111211100 000010  111222333578999996554442   13567887765455666676


Q ss_pred             CCCCCCc--eeeeeecCCCCceEEEEEcCCCEEEEEECC-CCeEEEEecCC
Q psy14258        340 KRDGTTE--QAIMPITDLKRPSVIDYHEKEEYIYYAELT-SYVIERRKMFG  387 (440)
Q Consensus       340 ~~~~~~~--~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~-~~~I~r~~~~g  387 (440)
                      ++. ...  +..+.-....+|.+++..++ +.||++|-. .+.|+|+...+
T Consensus       350 ~g~-~~~~~~~fl~~d~~gR~~dV~v~~D-Gallv~~D~~~g~i~Rv~~~~  398 (399)
T COG2133         350 DGN-YKVVLTGFLSGDLGGRPRDVAVAPD-GALLVLTDQGDGRILRVSYAG  398 (399)
T ss_pred             CCC-cceEEEEEEecCCCCcccceEECCC-CeEEEeecCCCCeEEEecCCC
Confidence            666 221  11221112258999999885 668888766 67999998765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.38  E-value=5.1e-05  Score=69.09  Aligned_cols=185  Identities=11%  Similarity=0.067  Sum_probs=126.7

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccceeeeecCCcEEEe-----ceEEEEe
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYP-----EAIYFCT  157 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~avD~~~~~lY~~-----~~I~~~~  157 (440)
                      +.++.|++..++||-+-.....|..+...|.-+..+         .+ .++..|+ ++-+++++.|+.     .++....
T Consensus        88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti---------PL-~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI---------PL-TGFSDPE-TIEYIGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             ccceeeCCCcceEEEecCCCceEEEEecCCceEEEe---------cc-cccCChh-HeEEecCCEEEEEehhcceEEEEE
Confidence            899999999999999887777777777777654432         22 4677888 555789999988     4565555


Q ss_pred             cCCceEEEEEc-------C---CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe----c----CccCc
Q psy14258        158 HYMEHCMIAID-------L---NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT----H----KIVYP  219 (440)
Q Consensus       158 ~dg~~~~~~~~-------~---~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~----~----~~~~P  219 (440)
                      .+-........       .   .-.--.|+|-||..+.||++-.... -+|.....+-+....-..    .    -+...
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-cEEEEEecCCcccccccccCcccccceEeecc
Confidence            54332111111       1   1223679999999999999976653 567766643321111000    0    13356


Q ss_pred             eEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec--C-----CccCceeeeeEecC-EEEEEecC
Q psy14258        220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK--G-----FPVQNLYDITVFEN-NLFVTSWR  279 (440)
Q Consensus       220 ~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~--~-----~~~~~p~gl~~~~~-~ly~td~~  279 (440)
                      +|+.+|+.++.|++-......+..++.+|.-+..+..  +     ..+++|.||+.+.+ .||++.-.
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence            7899999999999999999999999999976554422  2     23667899999866 99988653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.37  E-value=0.00046  Score=69.43  Aligned_cols=219  Identities=8%  Similarity=0.052  Sum_probs=129.3

Q ss_pred             CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC--CCCcEEEEEccCCCcEEEecCCccCceeeeeE--ecC
Q psy14258        196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT--YLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FEN  271 (440)
Q Consensus       196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~--~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~  271 (440)
                      .+|+.++.||.+.+.+.... ......++.+.+++|+++..  +...|+..++.+...+.+.....  ...+.++  +++
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG--MTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCCCCcEEEecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC--cccCcEECCCCC
Confidence            58999999999887775432 23345677778888887753  34589999988776665543211  1123333  455


Q ss_pred             EEEEEecC--CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCC--ccEEEEEEcCCCCCCc
Q psy14258        272 NLFVTSWR--NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK--PAIIKGLTFKRDGTTE  346 (440)
Q Consensus       272 ~ly~td~~--~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~--~~~I~~i~~~~~~~~~  346 (440)
                      .|+++...  +..|+.++..++....+.........     +.-.     |+ ..|+++..+  ...|+.+++++. ...
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~-----~~~s-----pDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~  327 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTS-----PSYS-----PDGSQIVFESDRSGSPQLYVMNADGS-NPR  327 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCc-----eeEc-----CCCCEEEEEECCCCCCeEEEEECCCC-CeE
Confidence            77665432  34588888765543332111100001     1111     23 345544322  347888887765 111


Q ss_pred             eeeeeecCCCCceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC--C--
Q psy14258        347 QAIMPITDLKRPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG--I--  420 (440)
Q Consensus       347 ~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~--~--  420 (440)
                        .+.. .-......++.+.++.|+++...  ...|+.++++|.....+.. + ...+.+++.+.++.||++...  .  
T Consensus       328 --~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~-~~~~~p~~spDG~~i~~~~~~~~~~~  402 (435)
T PRK05137        328 --RISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-G-FLVEGPTWAPNGRVIMFFRQTPGSGG  402 (435)
T ss_pred             --Eeec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-C-CCCCCCeECCCCCEEEEEEccCCCCC
Confidence              1111 11122346788999999887643  3579999988765544433 3 246778888889999887542  2  


Q ss_pred             -CeEEEEEeCCCee
Q psy14258        421 -GTINVAKISDFSI  433 (440)
Q Consensus       421 -~~I~~~~~~g~~~  433 (440)
                       ..+.+++++|+..
T Consensus       403 ~~~L~~~dl~g~~~  416 (435)
T PRK05137        403 APKLYTVDLTGRNE  416 (435)
T ss_pred             cceEEEEECCCCce
Confidence             4799999999543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.35  E-value=0.00042  Score=69.67  Aligned_cols=226  Identities=10%  Similarity=0.025  Sum_probs=127.1

Q ss_pred             eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258        152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV  231 (440)
Q Consensus       152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l  231 (440)
                      +|.+.+.+|...+.+... -....+.+..|...+|+++......+.|++.++++..++.+.... .....+++.+.+++|
T Consensus       185 ~l~i~D~~g~~~~~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l  262 (433)
T PRK04922        185 ALQVADSDGYNPQTILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEECCCCCCceEeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEE
Confidence            588889999877776543 233456677887778888865433368999999877665554322 222356788888888


Q ss_pred             EEEeCC--CCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEE
Q psy14258        232 YWVDTY--LDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIH  307 (440)
Q Consensus       232 y~~d~~--~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~  307 (440)
                      +++-..  ...|+.+++++...+.+....  ......++.  +..|+++....+                          
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~--~~~~~~~~spDG~~l~f~sd~~g--------------------------  314 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHF--GIDTEPTWAPDGKSIYFTSDRGG--------------------------  314 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCC--CCccceEECCCCCEEEEEECCCC--------------------------
Confidence            776433  235777777665544433221  011112222  223333211000                          


Q ss_pred             EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC--CeEEEEec
Q psy14258        308 IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS--YVIERRKM  385 (440)
Q Consensus       308 v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~--~~I~r~~~  385 (440)
                                             ...|+.+++++. ..  ..+...+ ......++.+.+++|+++....  ..|+..++
T Consensus       315 -----------------------~~~iy~~dl~~g-~~--~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~  367 (433)
T PRK04922        315 -----------------------RPQIYRVAASGG-SA--ERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDL  367 (433)
T ss_pred             -----------------------CceEEEEECCCC-Ce--EEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence                                   012333333222 00  0111111 1223467888889998876433  36889998


Q ss_pred             CCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258        386 FGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       386 ~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l  437 (440)
                      ++.....+. .+ ...+..++.+.++.|+++..  +...|..++++| ...+.|
T Consensus       368 ~~g~~~~Lt-~~-~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l  418 (433)
T PRK04922        368 STGSVRTLT-PG-SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRL  418 (433)
T ss_pred             CCCCeEECC-CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEc
Confidence            775544433 22 23455677777888888854  456799999999 444444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.28  E-value=0.0013  Score=66.14  Aligned_cols=226  Identities=10%  Similarity=0.018  Sum_probs=130.2

Q ss_pred             eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258        152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV  231 (440)
Q Consensus       152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l  231 (440)
                      +|.+++.+|...+.+.. .-......+..|...+|+++......+.|+..++++..++.+.... ......++.+.+.+|
T Consensus       183 ~l~~~d~dg~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQDGANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCCCCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECCCCCEE
Confidence            68899999988877654 3334567778886667777654322278999999877665553221 122456788888888


Q ss_pred             EEEeCC--CCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC--CCeEEEEeccCCCceEEEecCCCCeEEE
Q psy14258        232 YWVDTY--LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQSIIRVNKFNSDDYETIANFSRPFAIH  307 (440)
Q Consensus       232 y~~d~~--~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~~i~~~~~~~g~~~~~~~~~~~p~~~~  307 (440)
                      +++-..  ...|+.+++++.....+............+-++..|+++...  ...|+.++..+++...+...........
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~  340 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPV  340 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeE
Confidence            776443  346899998887766654432111112223345566655422  3468888875544333322111111111


Q ss_pred             EeccCCCCCCCCCceeEEeecCC--ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC-----CeE
Q psy14258        308 IYHRQKQPDALKPSTFLLYAKGK--PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS-----YVI  380 (440)
Q Consensus       308 v~~~~~qp~~~~~~~~l~~~~~~--~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~-----~~I  380 (440)
                       +    .|.    +.+|++....  ...|..+++++. .   ... +..-.......+.++++.||++....     ..+
T Consensus       341 -~----Spd----G~~ia~~~~~~~~~~i~~~d~~~~-~---~~~-lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L  406 (435)
T PRK05137        341 -W----SPR----GDLIAFTKQGGGQFSIGVMKPDGS-G---ERI-LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL  406 (435)
T ss_pred             -E----CCC----CCEEEEEEcCCCceEEEEEECCCC-c---eEe-ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceE
Confidence             1    111    2455554322  246777787655 1   111 11111345677899999998875432     479


Q ss_pred             EEEecCCCCeEEE
Q psy14258        381 ERRKMFGRGKEVV  393 (440)
Q Consensus       381 ~r~~~~g~~~~~~  393 (440)
                      ++++++|.....+
T Consensus       407 ~~~dl~g~~~~~l  419 (435)
T PRK05137        407 YTVDLTGRNEREV  419 (435)
T ss_pred             EEEECCCCceEEc
Confidence            9999998766544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.27  E-value=0.00025  Score=64.71  Aligned_cols=200  Identities=16%  Similarity=0.100  Sum_probs=128.7

Q ss_pred             ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEE-EEecCCCeEEEEeccCCCceEEE
Q psy14258        219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLF-VTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly-~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      .++||.++..+.||-+-.+-..|..++..|.-...+... .+..|.+|++-++..| .+|-....++.+....+.....+
T Consensus        88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~  166 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISA  166 (316)
T ss_pred             ccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEec
Confidence            678999999999999887778999999999988888763 2889999999888555 56666677666554333222111


Q ss_pred             -------ecCCC-CeEEEEeccCCCCCCCCCceeEEeecC-CccEEEEEEcCCCCCCceee--eeecC----CCCceEEE
Q psy14258        298 -------ANFSR-PFAIHIYHRQKQPDALKPSTFLLYAKG-KPAIIKGLTFKRDGTTEQAI--MPITD----LKRPSVID  362 (440)
Q Consensus       298 -------~~~~~-p~~~~v~~~~~qp~~~~~~~~l~~~~~-~~~~I~~i~~~~~~~~~~~~--~~~~~----~~~p~~l~  362 (440)
                             ....+ -.|+.=..-.      ..++-|+++.. ++-.|+.+..... .-....  .|-..    +...+|+.
T Consensus       167 ~~~~i~L~~~~k~N~GfEGlA~d------~~~~~l~~aKEr~P~~I~~~~~~~~-~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         167 KVQKIPLGTTNKKNKGFEGLAWD------PVDHRLFVAKERNPIGIFEVTQSPS-SLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             cceEEeccccCCCCcCceeeecC------CCCceEEEEEccCCcEEEEEecCCc-ccccccccCcccccceEeeccccce
Confidence                   11111 1122211000      01245666654 4667777764432 111000  01111    23456899


Q ss_pred             EEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE--------CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        363 YHEKEEYIYYAELTSYVIERRKMFGRGKEVVID--------TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       363 ~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~--------~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      ||+..+.+++-.-.++.+..++..|..++.+..        ..+..++|+|.| ..++||++.- -|...++..
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvSE-Pnlfy~F~~  311 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVSE-PNLFYRFTP  311 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEec-CCcceeccc
Confidence            999999999999999999999999976665543        234579999999 5789999943 344555544

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.27  E-value=0.00051  Score=64.74  Aligned_cols=198  Identities=13%  Similarity=0.140  Sum_probs=118.3

Q ss_pred             ceEEEEeCCCCEEEEEeCCC------------CcEEEEEccCCCc-EEEecC-C---ccCceeeeeEec-------CEEE
Q psy14258        219 PYGVTVDFPTKHVYWVDTYL------------DFIDRINYDGTDR-KTIRKG-F---PVQNLYDITVFE-------NNLF  274 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~------------~~i~~~~~dG~~~-~~i~~~-~---~~~~p~gl~~~~-------~~ly  274 (440)
                      ..++.+| ..++|++.|.+.            .+|..+++....+ +.+.-. .   .-.....+.++.       .++|
T Consensus         3 V~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             ccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            4578888 788888888753            3778888765433 222111 1   123456777776       5899


Q ss_pred             EEecCCCeEEEEeccCCCceEEEecCC--CCe--EEEEeccCCC-CCCC--------CCc-eeEEeecCCccEEEEEEcC
Q psy14258        275 VTSWRNQSIIRVNKFNSDDYETIANFS--RPF--AIHIYHRQKQ-PDAL--------KPS-TFLLYAKGKPAIIKGLTFK  340 (440)
Q Consensus       275 ~td~~~~~i~~~~~~~g~~~~~~~~~~--~p~--~~~v~~~~~q-p~~~--------~~~-~~l~~~~~~~~~I~~i~~~  340 (440)
                      +||.....|..++..+++...+.....  .|.  .+.+.....+ +.+.        .++ ..|||.......+++++..
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~  161 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS  161 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence            999999999999999998887775433  232  1222111111 1110        112 6788886554678888743


Q ss_pred             CCC---CCcee-----eeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCC----CCeEEEEE-CC-CCCeeeEE
Q psy14258        341 RDG---TTEQA-----IMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG----RGKEVVID-TG-IYNVEGMA  405 (440)
Q Consensus       341 ~~~---~~~~~-----~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g----~~~~~~~~-~~-~~~~~glA  405 (440)
                      --.   .....     ...+.. .....|+++|+ +|.||+++...+.|.+.+.++    .+.++++. .. +..|.+|+
T Consensus       162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~  240 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK  240 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred             HhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence            211   11111     112111 12446899999 688999999999999999998    34555554 44 78999999


Q ss_pred             Eec-CCCcEEEEeC
Q psy14258        406 VDW-MANNLYWTDA  418 (440)
Q Consensus       406 vD~-~~~~lYwtd~  418 (440)
                      +|. -.+.||+...
T Consensus       241 i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  241 IDPEGDGYLWVLSN  254 (287)
T ss_dssp             E-T--TS-EEEEE-
T ss_pred             eccccCceEEEEEC
Confidence            994 1478999863

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.23  E-value=9.5e-06  Score=61.33  Aligned_cols=73  Identities=21%  Similarity=0.214  Sum_probs=56.6

Q ss_pred             EEEEcCCCCeEEEEEcCCC---------------CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258        176 GIALDPTSGYMFFTKWGAT---------------RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF  240 (440)
Q Consensus       176 ~iavd~~~g~lywtd~~~~---------------~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~  240 (440)
                      +++|++..|.+||||....               .+++.+.++.....+++ ..++..|||+++.+.+..|++++....+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl-~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL-LDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE-EEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe-hhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            6899997799999986332               47899999987665544 4579999999999999999999999999


Q ss_pred             EEEEEccCC
Q psy14258        241 IDRINYDGT  249 (440)
Q Consensus       241 i~~~~~dG~  249 (440)
                      |.+.-+.|.
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999988773

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.0019  Score=64.85  Aligned_cols=235  Identities=8%  Similarity=0.026  Sum_probs=136.4

Q ss_pred             CCeEEEEEcCCC--CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC--CCCcEEEEEccCCCcEEEecCC
Q psy14258        183 SGYMFFTKWGAT--RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT--YLDFIDRINYDGTDRKTIRKGF  258 (440)
Q Consensus       183 ~g~lywtd~~~~--~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~--~~~~i~~~~~dG~~~~~i~~~~  258 (440)
                      +...|.......  ..+|+.++.||.+.+.+.... ......++.+.+.+|.++..  +...|+..++++...+.+....
T Consensus       164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~  242 (429)
T PRK03629        164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  242 (429)
T ss_pred             CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC
Confidence            345566553321  258999999999988776543 23456788888888887643  3347888888877666654421


Q ss_pred             ccCceeeeeE--ecCEEEEEecCC--CeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCC--c
Q psy14258        259 PVQNLYDITV--FENNLFVTSWRN--QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK--P  331 (440)
Q Consensus       259 ~~~~p~gl~~--~~~~ly~td~~~--~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~--~  331 (440)
                        .+...+++  ++..|+++....  ..|+.++..+++...+........... +    .     |+ ..|+++..+  .
T Consensus       243 --~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~-w----S-----PDG~~I~f~s~~~g~  310 (429)
T PRK03629        243 --RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT-W----F-----PDSQNLAYTSDQAGR  310 (429)
T ss_pred             --CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceE-E----C-----CCCCEEEEEeCCCCC
Confidence              11122344  455888875433  358888876654433322111111111 1    1     23 345444322  2


Q ss_pred             cEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258        332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       332 ~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~  409 (440)
                      ..|+.+++++. ...  .+... ........+.+++++|+++...  ...|+.+++++...+.+.. . ..-+..++.+.
T Consensus       311 ~~Iy~~d~~~g-~~~--~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~-~~~~~p~~SpD  384 (429)
T PRK03629        311 PQVYKVNINGG-APQ--RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-T-FLDETPSIAPN  384 (429)
T ss_pred             ceEEEEECCCC-CeE--EeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-C-CCCCCceECCC
Confidence            47888888765 211  11111 1233457788989999887543  3568889988765554443 2 12234567788


Q ss_pred             CCcEEEEeCC--CCeEEEEEeCCCeeeEEe
Q psy14258        410 ANNLYWTDAG--IGTINVAKISDFSIRKVL  437 (440)
Q Consensus       410 ~~~lYwtd~~--~~~I~~~~~~g~~~~~~l  437 (440)
                      ++.|+++...  ...+.+.+++| ...+.|
T Consensus       385 G~~i~~~s~~~~~~~l~~~~~~G-~~~~~l  413 (429)
T PRK03629        385 GTMVIYSSSQGMGSVLNLVSTDG-RFKARL  413 (429)
T ss_pred             CCEEEEEEcCCCceEEEEEECCC-CCeEEC
Confidence            9989888643  34588999999 434433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.0021  Score=64.52  Aligned_cols=234  Identities=11%  Similarity=0.018  Sum_probs=137.4

Q ss_pred             ecCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe
Q psy14258        142 MVTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT  213 (440)
Q Consensus       142 ~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~  213 (440)
                      +.++-.|+.        .+|.+++.||.+.+.+.. .-......+..|...+|.|+......+.|+..++++...+.+..
T Consensus       162 f~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~  240 (429)
T PRK03629        162 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS  240 (429)
T ss_pred             cCCeEEEEEeeCCCCcceeEEEEcCCCCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC
Confidence            346666776        269999999998877755 33456688899976677776543222689999998876655543


Q ss_pred             cCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEE-ecC-CCeEEEEe
Q psy14258        214 HKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVT-SWR-NQSIIRVN  287 (440)
Q Consensus       214 ~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~t-d~~-~~~i~~~~  287 (440)
                      .. .....+++.+.+.+|+++....  ..|+.+++++...+.+..+.  ......++.  +..|+++ +.. ...|+.++
T Consensus       241 ~~-~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d  317 (429)
T PRK03629        241 FP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN  317 (429)
T ss_pred             CC-CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC--CCcCceEECCCCCEEEEEeCCCCCceEEEEE
Confidence            21 2233578888899999875433  36899998877666554431  122333443  4466544 432 34788888


Q ss_pred             ccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCC--ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEE
Q psy14258        288 KFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK--PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYH  364 (440)
Q Consensus       288 ~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~--~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d  364 (440)
                      ..++....+...........+.          |+ .+++++...  ...|+.+++++. ..    ..+.....-....+.
T Consensus       318 ~~~g~~~~lt~~~~~~~~~~~S----------pDG~~Ia~~~~~~g~~~I~~~dl~~g-~~----~~Lt~~~~~~~p~~S  382 (429)
T PRK03629        318 INGGAPQRITWEGSQNQDADVS----------SDGKFMVMVSSNGGQQHIAKQDLATG-GV----QVLTDTFLDETPSIA  382 (429)
T ss_pred             CCCCCeEEeecCCCCccCEEEC----------CCCCEEEEEEccCCCceEEEEECCCC-Ce----EEeCCCCCCCCceEC
Confidence            7655443332111111111111          23 445554322  245777777655 11    111111111235678


Q ss_pred             cCCCEEEEEECCC--CeEEEEecCCCCeEEEE
Q psy14258        365 EKEEYIYYAELTS--YVIERRKMFGRGKEVVI  394 (440)
Q Consensus       365 ~~~~~vy~~d~~~--~~I~r~~~~g~~~~~~~  394 (440)
                      +++.+|+++....  ..++.++++|.....+.
T Consensus       383 pDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        383 PNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence            9899999887543  35888899987665553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.18  E-value=0.0024  Score=63.75  Aligned_cols=222  Identities=9%  Similarity=0.013  Sum_probs=123.5

Q ss_pred             eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258        152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV  231 (440)
Q Consensus       152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l  231 (440)
                      .|.+++.+|...+.+.... ......+..|...+|+|+......+.|+..++++...+.+... -.....+++.+.+++|
T Consensus       171 ~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCCCCCEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CCCccceEECCCCCEE
Confidence            5888999988777765422 2344566888778898887654336899999876544433321 1233456788778888


Q ss_pred             EEEeCCC--CcEEEEEccCCCcEEEecCCccC-ceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEE
Q psy14258        232 YWVDTYL--DFIDRINYDGTDRKTIRKGFPVQ-NLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHI  308 (440)
Q Consensus       232 y~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~-~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v  308 (440)
                      +++....  ..|+..++++...+.+....... .| ...-++..|+++....+                           
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g---------------------------  300 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGG---------------------------  300 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCC---------------------------
Confidence            8765433  35777777665444433211010 11 11112223333321100                           


Q ss_pred             eccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC--CeEEEEecC
Q psy14258        309 YHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS--YVIERRKMF  386 (440)
Q Consensus       309 ~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~--~~I~r~~~~  386 (440)
                                            ...|+.+++++. ..  ..+. .........++.+.++.++++....  ..|+.++++
T Consensus       301 ----------------------~~~iy~~d~~~~-~~--~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       301 ----------------------SPQIYMMDADGG-EV--RRLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             ----------------------CceEEEEECCCC-CE--EEee-cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence                                  012333333322 00  0000 0112234566778888888887543  478888888


Q ss_pred             CCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC--CCeEEEEEeCCC
Q psy14258        387 GRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG--IGTINVAKISDF  431 (440)
Q Consensus       387 g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~--~~~I~~~~~~g~  431 (440)
                      +...+.+.. . ......++.+.++.|+++...  ...+.+.+.+|+
T Consensus       355 ~~~~~~l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~  399 (417)
T TIGR02800       355 GGGERVLTD-T-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR  399 (417)
T ss_pred             CCCeEEccC-C-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence            754444432 2 234555777778999998653  356888899993

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.17  E-value=0.0055  Score=56.19  Aligned_cols=269  Identities=11%  Similarity=0.034  Sum_probs=148.8

Q ss_pred             cce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        136 GTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       136 p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                      ... ++.+.++.|+.+   +.|.+.+++.................+...|....|+.+...   +.|...+++.......
T Consensus        12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~   88 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD---KTIRLWDLETGECVRT   88 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---CeEEEEEcCcccceEE
Confidence            344 555555555544   677777776544332222222334588888865566666543   5788888876433323


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccC
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFN  290 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~  290 (440)
                      +......+..+.+.+. ++++++....+.|...++........... ....+..+++..+ .++.+....+.|...+..+
T Consensus        89 ~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  166 (289)
T cd00200          89 LTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT  166 (289)
T ss_pred             EeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence            3322335677888755 45666655577888888763322222221 1234667777763 4444443467777777765


Q ss_pred             CCceEEEecCC-CCeEEEEeccCCCCCCCCCce-eEEeecCCccEEEEEEcCCCCCCceeeeee-cCCCCceEEEEEcCC
Q psy14258        291 SDDYETIANFS-RPFAIHIYHRQKQPDALKPST-FLLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TDLKRPSVIDYHEKE  367 (440)
Q Consensus       291 g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~-~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~~~~p~~l~~d~~~  367 (440)
                      ++....+.... ....+.+.          +++ .++++.. .+.|..+++...    .....+ .....+.++++++. 
T Consensus       167 ~~~~~~~~~~~~~i~~~~~~----------~~~~~l~~~~~-~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~-  230 (289)
T cd00200         167 GKCVATLTGHTGEVNSVAFS----------PDGEKLLSSSS-DGTIKLWDLSTG----KCLGTLRGHENGVNSVAFSPD-  230 (289)
T ss_pred             cccceeEecCccccceEEEC----------CCcCEEEEecC-CCcEEEEECCCC----ceecchhhcCCceEEEEEcCC-
Confidence            55544443222 23344333          232 4555543 478888887643    112222 12225678999987 


Q ss_pred             CEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEE
Q psy14258        368 EYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA  426 (440)
Q Consensus       368 ~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~  426 (440)
                      +.++++....+.|+..++........+...-..+..++++..+. +.++-...+.|.+.
T Consensus       231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw  288 (289)
T cd00200         231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIW  288 (289)
T ss_pred             CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCC-EEEEecCCCeEEec
Confidence            55666655678888888874333222333334678888886544 44444445566553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=0.00081  Score=67.83  Aligned_cols=218  Identities=8%  Similarity=-0.019  Sum_probs=131.0

Q ss_pred             eEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce-
Q psy14258         62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-  138 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-  138 (440)
                      |..++.+|.+......... .+....+++.+++|+|+....  ..|+..++.+.....+           ...-..... 
T Consensus       200 l~i~d~dG~~~~~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-----------t~~~g~~~~~  267 (448)
T PRK04792        200 LMIADYDGYNEQMLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-----------TSFPGINGAP  267 (448)
T ss_pred             EEEEeCCCCCceEeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-----------cCCCCCcCCe
Confidence            6666777766552222111 156778999999998875433  3577777765432211           111111234 


Q ss_pred             eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE
Q psy14258        139 RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV  212 (440)
Q Consensus       139 avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~  212 (440)
                      ++.+.++.|+++      ..|.+.++++...+.+.. ........+..|...+|+++........|++.++++...+.+.
T Consensus       268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence            777788888886      358999998876655543 2234556678887778887754332368999999876655553


Q ss_pred             ecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCC--eEEEEec
Q psy14258        213 THKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ--SIIRVNK  288 (440)
Q Consensus       213 ~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~--~i~~~~~  288 (440)
                      ... .+..+.++.+.++.||++....+  .|..+++++...+.+.....-..| ..+-++..|+++....+  .++.++.
T Consensus       347 ~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        347 FEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             cCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC
Confidence            222 23345678888999998865443  788888888776655443111233 34445667777654332  3666665


Q ss_pred             cCCCceE
Q psy14258        289 FNSDDYE  295 (440)
Q Consensus       289 ~~g~~~~  295 (440)
                       +|+...
T Consensus       425 -~G~~~~  430 (448)
T PRK04792        425 -DGRFKA  430 (448)
T ss_pred             -CCCceE
Confidence             444433

>KOG4499|consensus

Probab=98.11  E-value=0.00039  Score=61.24  Aligned_cols=77  Identities=17%  Similarity=0.299  Sum_probs=60.3

Q ss_pred             cCCCCceEEEEEcCCCEEEEEECCCCeEEEEe--cCC---CCeEEEEEC------CCCCeeeEEEecCCCcEEEEeCCCC
Q psy14258        353 TDLKRPSVIDYHEKEEYIYYAELTSYVIERRK--MFG---RGKEVVIDT------GIYNVEGMAVDWMANNLYWTDAGIG  421 (440)
Q Consensus       353 ~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~--~~g---~~~~~~~~~------~~~~~~glAvD~~~~~lYwtd~~~~  421 (440)
                      ..+.-+.||++|.+.+.+|++|+-+..|-..+  ..+   +++..+...      +-..|+||++|- +|+||++....+
T Consensus       155 ~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~  233 (310)
T KOG4499|consen  155 NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGG  233 (310)
T ss_pred             hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCc
Confidence            34456789999999999999999999994444  433   456666541      335699999995 889999999999


Q ss_pred             eEEEEEeCC
Q psy14258        422 TINVAKISD  430 (440)
Q Consensus       422 ~I~~~~~~g  430 (440)
                      +|..+++..
T Consensus       234 ~V~~~dp~t  242 (310)
T KOG4499|consen  234 TVQKVDPTT  242 (310)
T ss_pred             EEEEECCCC
Confidence            999998765

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.09  E-value=2.6e-05  Score=58.93  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             EEEEEcCCCEEEEEEC-----------------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCe
Q psy14258        360 VIDYHEKEEYIYYAEL-----------------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGT  422 (440)
Q Consensus       360 ~l~~d~~~~~vy~~d~-----------------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~  422 (440)
                      ++|++..++.||++|.                 ..+++.+.++.....+++ ..+|..|+|+|+...+..|.+++....+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl-~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL-LDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE-EEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe-hhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            6889998899999985                 357999999997544454 4599999999999999999999999999


Q ss_pred             EEEEEeCC
Q psy14258        423 INVAKISD  430 (440)
Q Consensus       423 I~~~~~~g  430 (440)
                      |.+.-+.|
T Consensus        81 i~rywl~G   88 (89)
T PF03088_consen   81 ILRYWLKG   88 (89)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEEeC
Confidence            99998887

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.0035  Score=62.49  Aligned_cols=210  Identities=8%  Similarity=-0.092  Sum_probs=129.3

Q ss_pred             eEEEecCCCceeeeeecccceEEEEEeeecccE-EEEEEcC--CCCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258         62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHC-MIAIDLN--LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  138 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~-ly~~d~~--~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~  138 (440)
                      |..++.+|...........  .....+.+..++ +|++...  ...|+..++.+...+.+           ...-.....
T Consensus       171 l~~~d~dg~~~~~~~~~~~--~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-----------t~~~g~~~~  237 (419)
T PRK04043        171 IVLADYTLTYQKVIVKGGL--NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-----------ASSQGMLVV  237 (419)
T ss_pred             EEEECCCCCceeEEccCCC--eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-----------ecCCCcEEe
Confidence            8888888887652222222  667888888875 7776554  45688877765432221           111111223


Q ss_pred             -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                       ++.+.++.|.++      ..|.+.++++...+.+..... .-..-...|...+|||+......+.|++.+++|...+.+
T Consensus       238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence             566677778877      479999998877666644221 112235777666788886543337999999998877666


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCC--------CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC--CC
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYL--------DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQ  281 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~--------~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~  281 (440)
                      .......   ..+++.++.|.++....        ..|..++++++..+.+..+. .......+-++..|+++...  ..
T Consensus       317 t~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~  392 (419)
T PRK04043        317 VFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQS  392 (419)
T ss_pred             ccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcE
Confidence            5433222   37788899888876543        47899999888777665532 22222344456677766532  22


Q ss_pred             eEEEEecc
Q psy14258        282 SIIRVNKF  289 (440)
Q Consensus       282 ~i~~~~~~  289 (440)
                      .+..++..
T Consensus       393 ~L~~~~l~  400 (419)
T PRK04043        393 ALGIIRLN  400 (419)
T ss_pred             EEEEEecC
Confidence            36666664

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=0.0019  Score=65.02  Aligned_cols=212  Identities=10%  Similarity=0.014  Sum_probs=127.1

Q ss_pred             eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258         62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  138 (440)
Q Consensus        62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~  138 (440)
                      |..++.++.... +.-....  +....+++.+++|+++....  ..|+..++++.....           +...-.....
T Consensus       186 l~i~D~~g~~~~~lt~~~~~--v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-----------l~~~~g~~~~  252 (433)
T PRK04922        186 LQVADSDGYNPQTILRSAEP--ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-----------VASFRGINGA  252 (433)
T ss_pred             EEEECCCCCCceEeecCCCc--cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-----------eccCCCCccC
Confidence            666777666544 2222222  67788999989998886543  357777765443221           1111111234


Q ss_pred             -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                       ++.+.+++|+++      ..|.+.++++...+.+.. ........+..|...+|+++......+.|+..++++...+.+
T Consensus       253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l  331 (433)
T PRK04922        253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL  331 (433)
T ss_pred             ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence             777788888876      369999998877665533 222334667888766777765322226799999987665545


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC--CCeEEEEe
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQSIIRVN  287 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~~i~~~~  287 (440)
                      .... ......++.+.++.|+++....  ..|..+++++...+.+..+.....| ..+-++..|+++...  ...|+.++
T Consensus       332 t~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~  409 (433)
T PRK04922        332 TFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESP-SFAPNGSMVLYATREGGRGVLAAVS  409 (433)
T ss_pred             ecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEE
Confidence            4322 3344678888899999876533  2688888877766655433211222 233345566665532  34577776


Q ss_pred             cc
Q psy14258        288 KF  289 (440)
Q Consensus       288 ~~  289 (440)
                      ..
T Consensus       410 ~~  411 (433)
T PRK04922        410 TD  411 (433)
T ss_pred             CC
Confidence            63

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.98  E-value=0.0045  Score=62.18  Aligned_cols=211  Identities=8%  Similarity=-0.036  Sum_probs=126.5

Q ss_pred             eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258         62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  138 (440)
Q Consensus        62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~  138 (440)
                      |..++.+|.... +......  +....+++.+++|+|+....  ..|+..++++.....+           ...-.....
T Consensus       181 l~~~d~~g~~~~~l~~~~~~--~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-----------~~~~g~~~~  247 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREP--ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-----------TNFEGLNGA  247 (430)
T ss_pred             EEEECCCCCCceEEecCCCc--eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-----------cCCCCCcCC
Confidence            666677776554 2222222  67888999999997765433  4577777765432221           111112224


Q ss_pred             -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                       ++.+.++.|+++      ..|.+.++++...+.+.. ...........|....|+++......+.|++.++++...+.+
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l  326 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV  326 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence             677777888876      369999999877655533 222344556777667787765332226899999987665555


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCC--CeEEEEe
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN--QSIIRVN  287 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~--~~i~~~~  287 (440)
                      .... .......+.+.++.|+++....+  .|..+++++...+.+........| .++-++..|+++....  ..++.++
T Consensus       327 t~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~  404 (430)
T PRK00178        327 TFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESP-SVAPNGTMLIYATRQQGRGVLMLVS  404 (430)
T ss_pred             ecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEE
Confidence            4322 22234567788999998875433  688888887766665542111223 3444556777776433  3466666


Q ss_pred             c
Q psy14258        288 K  288 (440)
Q Consensus       288 ~  288 (440)
                      .
T Consensus       405 ~  405 (430)
T PRK00178        405 I  405 (430)
T ss_pred             C
Confidence            5

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.97  E-value=0.0048  Score=56.37  Aligned_cols=194  Identities=12%  Similarity=0.105  Sum_probs=117.2

Q ss_pred             CCcEEEe------ceEEEEecCCceE-EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc
Q psy14258        144 THKIVYP------EAIYFCTHYMEHC-MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI  216 (440)
Q Consensus       144 ~~~lY~~------~~I~~~~~dg~~~-~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~  216 (440)
                      .+.||-+      .+|.+.+++.... ...--..-..-.||++-  ++.||--.|.+  +...+.+.+.-....-+.- .
T Consensus        55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~--~~~f~yd~~tl~~~~~~~y-~  129 (264)
T PF05096_consen   55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKE--GTGFVYDPNTLKKIGTFPY-P  129 (264)
T ss_dssp             TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSS--SEEEEEETTTTEEEEEEE--S
T ss_pred             CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecC--CeEEEEccccceEEEEEec-C
Confidence            4568877      5788888886442 22211233467899995  58999999997  5888888864322111111 2


Q ss_pred             cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC-CcEEE--e-cCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT-DRKTI--R-KGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~-~~~~i--~-~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~  292 (440)
                      ....||+-|  ++.||.+| ++++|+..+...- ....+  . .+..+..-.-|...++.||---|.++.|.++|+.+|+
T Consensus       130 ~EGWGLt~d--g~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  130 GEGWGLTSD--GKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             SS--EEEEC--SSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-B
T ss_pred             CcceEEEcC--CCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCe
Confidence            346799976  77898888 5788998886532 22222  1 1333555677888899999999999999999999886


Q ss_pred             ceEEEe--cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258        293 DYETIA--NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI  370 (440)
Q Consensus       293 ~~~~~~--~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v  370 (440)
                      ....+.  ++-        . ..                        ..+..  .    .  +...--.|||||+.++.+
T Consensus       207 V~~~iDls~L~--------~-~~------------------------~~~~~--~----~--~~~dVLNGIAyd~~~~~l  245 (264)
T PF05096_consen  207 VVGWIDLSGLR--------P-EV------------------------GRDKS--R----Q--PDDDVLNGIAYDPETDRL  245 (264)
T ss_dssp             EEEEEE-HHHH--------H-HH------------------------TSTTS--T--------TTS-EEEEEEETTTTEE
T ss_pred             EEEEEEhhHhh--------h-cc------------------------ccccc--c----c--ccCCeeEeEeEeCCCCEE
Confidence            654331  100        0 00                        00000  0    0  001124699999999999


Q ss_pred             EEEECCCCeEEEEecC
Q psy14258        371 YYAELTSYVIERRKMF  386 (440)
Q Consensus       371 y~~d~~~~~I~r~~~~  386 (440)
                      |++-..=..+|++.+.
T Consensus       246 ~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  246 FVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             EEEETT-SEEEEEEEE
T ss_pred             EEEeCCCCceEEEEEE
Confidence            9998777788888764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.94  E-value=0.015  Score=53.16  Aligned_cols=236  Identities=11%  Similarity=0.048  Sum_probs=137.5

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC-
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD-  250 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~-  250 (440)
                      ....+++++|....|+.+...   +.|...+++.................+.+.+.+..|+.+. ..+.|...++.... 
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~---g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~   85 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGD---GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGEC   85 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecC---cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccc
Confidence            457788898865666655543   4777777765443222222222334777776665666554 46778888876533 


Q ss_pred             cEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCc-eeEEee
Q psy14258        251 RKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPS-TFLLYA  327 (440)
Q Consensus       251 ~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~~~  327 (440)
                      ...+...  ...+..+.+..+ .++++....+.|...+..+++....+.... .+..+.+.          |+ .+++.+
T Consensus        86 ~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~l~~~  153 (289)
T cd00200          86 VRTLTGH--TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS----------PDGTFVASS  153 (289)
T ss_pred             eEEEecc--CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc----------CcCCEEEEE
Confidence            2222221  234667777664 566665557778777776554444433222 23344333          22 344444


Q ss_pred             cCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEE
Q psy14258        328 KGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAV  406 (440)
Q Consensus       328 ~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAv  406 (440)
                      . ..+.|..+++... .   ....+.. -.....+++++.++.++.+.. .+.|...++............-..+..+++
T Consensus       154 ~-~~~~i~i~d~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  227 (289)
T cd00200         154 S-QDGTIKLWDLRTG-K---CVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAF  227 (289)
T ss_pred             c-CCCcEEEEEcccc-c---cceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhcCCceEEEEE
Confidence            3 2377888887643 1   1111111 224678999998777777765 788888888753332222223346788898


Q ss_pred             ecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        407 DWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       407 D~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +.. +.++.+....+.|.+.++..
T Consensus       228 ~~~-~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         228 SPD-GYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             cCC-CcEEEEEcCCCcEEEEEcCC
Confidence            865 56666665578899998874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.91  E-value=0.008  Score=60.00  Aligned_cols=202  Identities=9%  Similarity=-0.052  Sum_probs=121.2

Q ss_pred             eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258         62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  138 (440)
Q Consensus        62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~  138 (440)
                      |..++.++.... +......  ....++++.+++|+|+....  ..|+..++.......           +...-.....
T Consensus       172 l~~~d~~g~~~~~l~~~~~~--~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-----------~~~~~~~~~~  238 (417)
T TIGR02800       172 LQVADYDGANPQTITRSREP--ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-----------VASFPGMNGA  238 (417)
T ss_pred             EEEEcCCCCCCEEeecCCCc--eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-----------eecCCCCccc
Confidence            667777666554 3222222  67778999999999987644  456666655332111           1111122344


Q ss_pred             -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                       ++.+.++.||++      ..|+..++++...+.+... .......+..|...+|+++......+.|++.++++...+.+
T Consensus       239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l  317 (417)
T TIGR02800       239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL  317 (417)
T ss_pred             eEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence             677777778876      3588889887665554332 12223456677666787765432226899999988765544


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR  279 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~  279 (440)
                      ... ......+++.+.+..|+++....  ..|..+++++...+.+........| ..+-++..|+++...
T Consensus       318 ~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p-~~spdg~~l~~~~~~  385 (417)
T TIGR02800       318 TFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESP-SFAPNGRMILYATTR  385 (417)
T ss_pred             ecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCc-eECCCCCEEEEEEeC
Confidence            432 23445678888888999987643  3788888887666555442212222 334456677776653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0077  Score=60.41  Aligned_cols=216  Identities=6%  Similarity=-0.049  Sum_probs=123.8

Q ss_pred             eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258         62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  138 (440)
Q Consensus        62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~  138 (440)
                      |..++.+|.... +......  +...++.+.+++|+++....  ..|+..++.+.....           +...-.....
T Consensus       178 L~~~D~dG~~~~~l~~~~~~--v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-----------l~~~~g~~~~  244 (427)
T PRK02889        178 LQISDADGQNAQSALSSPEP--IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-----------VANFKGSNSA  244 (427)
T ss_pred             EEEECCCCCCceEeccCCCC--cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-----------eecCCCCccc
Confidence            666777666544 2222222  67788999988988876433  357777775443221           1111112334


Q ss_pred             -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                       ++.+.++.|+++      ..|+++++++...+.+.. ........+..|...+|+++........|+..++++...+.+
T Consensus       245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l  323 (427)
T PRK02889        245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV  323 (427)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence             777788888876      368888888776555533 222334556788666777664322226899999887655444


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCC--CeEEEEe
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN--QSIIRVN  287 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~--~~i~~~~  287 (440)
                      .... ......++.+.++.|+++....+  .|...++++...+.+..+.....| ..+-++..|+++....  ..++.++
T Consensus       324 t~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p-~~spdg~~l~~~~~~~g~~~l~~~~  401 (427)
T PRK02889        324 TFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESP-SFAPNGRYILYATQQGGRSVLAAVS  401 (427)
T ss_pred             ecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCc-eECCCCCEEEEEEecCCCEEEEEEE
Confidence            4222 22234678888889888765433  688888877666655443111122 2333444666554322  2355555


Q ss_pred             ccCCCce
Q psy14258        288 KFNSDDY  294 (440)
Q Consensus       288 ~~~g~~~  294 (440)
                      . +|+..
T Consensus       402 ~-~g~~~  407 (427)
T PRK02889        402 S-DGRIK  407 (427)
T ss_pred             C-CCCce
Confidence            5 34433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.82  E-value=0.013  Score=54.22  Aligned_cols=214  Identities=14%  Similarity=0.105  Sum_probs=111.8

Q ss_pred             EcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC-----CCCceeEEec-------CccCceEEEEeCCCCE----
Q psy14258        167 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-----GTERFPMVTH-------KIVYPYGVTVDFPTKH----  230 (440)
Q Consensus       167 ~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d-----G~~~~~l~~~-------~~~~P~gl~vD~~~~~----  230 (440)
                      +...|.+|.||++.| .+.++++|.+.  ......+.+     |.....++..       ....|.|+.+....+.    
T Consensus        18 tDp~L~N~WGia~~p-~~~~WVadngT--~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~   94 (336)
T TIGR03118        18 VDPGLRNAWGLSYRP-GGPFWVANTGT--GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG   94 (336)
T ss_pred             cCccccccceeEecC-CCCEEEecCCc--ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence            455789999999999 57788888776  355666665     4443323331       1347999988643321    


Q ss_pred             ---------EEEEeCCCCcEEEEEc--cCC---CcEEEecCC-ccCceeeeeEe----cCEEEEEecCCCeEEEEeccCC
Q psy14258        231 ---------VYWVDTYLDFIDRINY--DGT---DRKTIRKGF-PVQNLYDITVF----ENNLFVTSWRNQSIIRVNKFNS  291 (440)
Q Consensus       231 ---------ly~~d~~~~~i~~~~~--dG~---~~~~i~~~~-~~~~p~gl~~~----~~~ly~td~~~~~i~~~~~~~g  291 (440)
                               ||.+  +.+.|..-..  +-.   .-.+++... .-.-=.|+++.    +++||-+|..+++|-.++.. -
T Consensus        95 ~g~~~~a~Fif~t--EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f  171 (336)
T TIGR03118        95 EGITGPSRFLFVT--EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-F  171 (336)
T ss_pred             CCcccceeEEEEe--CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-c
Confidence                     2222  2233433321  111   111222211 11122577766    56899999888877665532 1


Q ss_pred             CceEEEecC--------CCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEE
Q psy14258        292 DDYETIANF--------SRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDY  363 (440)
Q Consensus       292 ~~~~~~~~~--------~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~  363 (440)
                      +...+-..+        ..|++|+..           .+.|||+-...        |.. ...+                
T Consensus       172 ~~~~~~g~F~DP~iPagyAPFnIqni-----------g~~lyVtYA~q--------d~~-~~d~----------------  215 (336)
T TIGR03118       172 RPPPLPGSFIDPALPAGYAPFNVQNL-----------GGTLYVTYAQQ--------DAD-RNDE----------------  215 (336)
T ss_pred             ccccCCCCccCCCCCCCCCCcceEEE-----------CCeEEEEEEec--------CCc-cccc----------------
Confidence            111110000        013333322           23333321100        000 0000                


Q ss_pred             EcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-CCCCCeeeEEE-----ecCCCcEEEEeCCCCeEEEEEeC-C
Q psy14258        364 HEKEEYIYYAELTSYVIERRKMFGRGKEVVID-TGIYNVEGMAV-----DWMANNLYWTDAGIGTINVAKIS-D  430 (440)
Q Consensus       364 d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~~~~~~~glAv-----D~~~~~lYwtd~~~~~I~~~~~~-g  430 (440)
                              ++..+.+-|-.++++|.-...+.+ ..|+.|.|||+     -..++.|-+-+-+.++|.+++.. |
T Consensus       216 --------v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       216 --------VAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             --------ccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence                    111233455555666654444433 34789999997     44678999999999999999975 5

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.80  E-value=0.021  Score=57.39  Aligned_cols=110  Identities=8%  Similarity=-0.033  Sum_probs=70.3

Q ss_pred             cCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec
Q psy14258        143 VTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH  214 (440)
Q Consensus       143 ~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~  214 (440)
                      .++-.|+.        ..|.+.+.+|...+.+.. .-......+..|...+|.++......+.|+..++++...+.+...
T Consensus       168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~  246 (429)
T PRK01742        168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNR-SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF  246 (429)
T ss_pred             CCEEEEEEEEcCCCceEEEEEECCCCCCceEecc-CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC
Confidence            45545665        368888999988766544 333457788899777888876543336899999987665544322


Q ss_pred             CccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEE
Q psy14258        215 KIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTI  254 (440)
Q Consensus       215 ~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i  254 (440)
                      . ..-..+++.+.+.+|+++-...+  .|+.+++++.....+
T Consensus       247 ~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l  287 (429)
T PRK01742        247 R-GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL  287 (429)
T ss_pred             C-CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence            1 12235678878888888643333  466667666554444

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.80  E-value=0.012  Score=55.42  Aligned_cols=187  Identities=13%  Similarity=0.037  Sum_probs=108.5

Q ss_pred             EEEEEeeecccEEEEEEcCC------------CCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecC-----
Q psy14258         83 AIYFCTHYMEHCMIAIDLNL------------SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVT-----  144 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~------------~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~-----  144 (440)
                      +.++.+|. .++||+.|...            .+|..+++....+  +....-...+  ......... +||-..     
T Consensus         3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~l--i~~~~~p~~~--~~~~s~lndl~VD~~~~~~~~   77 (287)
T PF03022_consen    3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQL--IRRYPFPPDI--APPDSFLNDLVVDVRDGNCDD   77 (287)
T ss_dssp             EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCE--EEEEE--CCC--S-TCGGEEEEEEECTTTTS-S
T ss_pred             ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcE--EEEEECChHH--cccccccceEEEEccCCCCcc
Confidence            56677774 47788887642            2344444432221  1111111111  123345566 788754     


Q ss_pred             CcEEEe----ceEEEEecCC-ceEEEEEcCC------------------CCCceEEEEcC---CCCeEEEEEcCCCCCcE
Q psy14258        145 HKIVYP----EAIYFCTHYM-EHCMIAIDLN------------------LSKPRGIALDP---TSGYMFFTKWGATRPML  198 (440)
Q Consensus       145 ~~lY~~----~~I~~~~~dg-~~~~~~~~~~------------------~~~P~~iavd~---~~g~lywtd~~~~~~~I  198 (440)
                      +.+|++    ..|.+.++.. +.++++-...                  ....-||++.|   ..++|||.-..+  .++
T Consensus        78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss--~~l  155 (287)
T PF03022_consen   78 GFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS--RKL  155 (287)
T ss_dssp             EEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---SEE
T ss_pred             eEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC--CcE
Confidence            368999    5788888765 4444432211                  12256788876   346899998765  478


Q ss_pred             EEEeCC----CCCc--e------eEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC----CCcEEEecCC-ccC
Q psy14258        199 ERSLLD----GTER--F------PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG----TDRKTIRKGF-PVQ  261 (440)
Q Consensus       199 ~r~~~d----G~~~--~------~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG----~~~~~i~~~~-~~~  261 (440)
                      ++...+    .+..  .      +.+........|+++| .++.||+++...+.|.+.+.++    .+.+++.... .+.
T Consensus       156 y~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~  234 (287)
T PF03022_consen  156 YRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID-PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQ  234 (287)
T ss_dssp             EEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE-TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GS
T ss_pred             EEEEHHHhhCccccccccccccceeccccCCCCceEEEC-CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceee
Confidence            887642    2111  1      1222222356799999 5999999999999999999988    5667777643 489


Q ss_pred             ceeeeeEec---CEEEEEe
Q psy14258        262 NLYDITVFE---NNLFVTS  277 (440)
Q Consensus       262 ~p~gl~~~~---~~ly~td  277 (440)
                      .|.++++..   +.||+..
T Consensus       235 ~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  235 WPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SEEEEEE-T--TS-EEEEE
T ss_pred             ccceeeeccccCceEEEEE
Confidence            999999998   6999875

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.66  E-value=0.033  Score=55.83  Aligned_cols=221  Identities=8%  Similarity=-0.028  Sum_probs=123.8

Q ss_pred             eeEEEecCCCcee-eeeecccceEEEEEeeecccE---EEEEEcC-CCCceeEEeCCCCCcceeeccccccceeeccccc
Q psy14258         61 CFGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHC---MIAIDLN-LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD  135 (440)
Q Consensus        61 ~I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~---ly~~d~~-~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  135 (440)
                      .|..++.+|.+.. +......  ...-.+.+.+++   +|.+..+ ...|+...+++.....+           ...-..
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~--~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-----------t~~~g~  232 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSL--SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-----------LALQGN  232 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCC--cccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-----------ecCCCC
Confidence            3888888887765 3332222  345578887654   3455443 34688888876543322           111112


Q ss_pred             cce-eeeecCCcEEEe------ceEEEE--ecCC---ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258        136 GTE-RFPMVTHKIVYP------EAIYFC--THYM---EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       136 p~~-avD~~~~~lY~~------~~I~~~--~~dg---~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~  203 (440)
                      ... ++.+.++.|.|+      ..+.+.  ++++   ...+.+...........+..|...+|+|+.......+|+++++
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            234 677778888877      145554  3332   2333443332233445688886666777653322268999988


Q ss_pred             CCCC-ceeEEecCccCceEEEEeCCCCEEEEEeCC--CCcEEEEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEec
Q psy14258        204 DGTE-RFPMVTHKIVYPYGVTVDFPTKHVYWVDTY--LDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSW  278 (440)
Q Consensus       204 dG~~-~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~--~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~  278 (440)
                      ++.. ....+..........++.+.+++|+++...  ...|..+++++...+.+..+.  ......++  ++..|+++..
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~--~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP--ENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC--CCccceEECCCCCEEEEEEC
Confidence            7532 222222222233456788888889887543  347889999888777665431  12233444  3457776543


Q ss_pred             --CCCeEEEEeccCCCceEE
Q psy14258        279 --RNQSIIRVNKFNSDDYET  296 (440)
Q Consensus       279 --~~~~i~~~~~~~g~~~~~  296 (440)
                        ....|+.++..+++...+
T Consensus       391 ~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        391 NSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CCCCceEEEEECCCCCEEEe
Confidence              245678888765554433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.65  E-value=0.083  Score=52.96  Aligned_cols=225  Identities=8%  Similarity=0.006  Sum_probs=118.3

Q ss_pred             eEEEEecCCceEEEEEcCC--CCCceEEEEcCCCC---eEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        152 AIYFCTHYMEHCMIAIDLN--LSKPRGIALDPTSG---YMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       152 ~I~~~~~dg~~~~~~~~~~--~~~P~~iavd~~~g---~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                      .|.+++.||...+.+....  ...|   +..|...   .+|.+..... +.|+..+++|..++.+.... +.....++.+
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP---~wSPDG~~~~~~y~S~~~g~-~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSP  240 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITP---TWMHIGSGFPYLYVSYKLGV-PKIFLGSLENPAGKKILALQ-GNQLMPTFSP  240 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccc---eEccCCCceEEEEEEccCCC-ceEEEEECCCCCceEeecCC-CCccceEECC
Confidence            6889999999887765422  1223   4455332   3456655444 79999999998877765432 2234567778


Q ss_pred             CCCEEEEEeCCCC--cEEEE--EccC---CCcEEEecCCccCceeeeeE--ecCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        227 PTKHVYWVDTYLD--FIDRI--NYDG---TDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       227 ~~~~ly~~d~~~~--~i~~~--~~dG---~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      .+.+|.++....+  .++..  ++++   ...+.+..+. .......++  ++..|+++...                  
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~------------------  301 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNK------------------  301 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECC------------------
Confidence            8888888764322  33332  2221   1112222110 000001111  12222222110                  


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC-
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT-  376 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~-  376 (440)
                                                     .+...|+.+++++.+. ....+.. ........++.|++++|+++... 
T Consensus       302 -------------------------------~g~~~ly~~~~~~~g~-~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~  348 (428)
T PRK01029        302 -------------------------------DGRPRIYIMQIDPEGQ-SPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIK  348 (428)
T ss_pred             -------------------------------CCCceEEEEECccccc-ceEEecc-CCCCccceeECCCCCEEEEEEcCC
Confidence                                           0112344444432200 0001110 11122345678888888887543 


Q ss_pred             -CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeee
Q psy14258        377 -SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIR  434 (440)
Q Consensus       377 -~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~  434 (440)
                       ...|+.+++++...+.+.. +-......+..+.++.||++..  +...|.+++++|...+
T Consensus       349 g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        349 GVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             CCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence             3579999998766555543 3234566777777888888743  4567999999884433

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.62  E-value=2.2e-05  Score=48.33  Aligned_cols=27  Identities=30%  Similarity=0.663  Sum_probs=24.0

Q ss_pred             CCCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         19 IDGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        19 ~~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      .++.|+|+|.+.+++|+|+ ++||.|.+
T Consensus         4 ~NGgC~h~C~~~~g~~~C~C~~Gy~L~~   31 (36)
T PF14670_consen    4 NNGGCSHICVNTPGSYRCSCPPGYKLAE   31 (36)
T ss_dssp             GGGGSSSEEEEETTSEEEE-STTEEE-T
T ss_pred             CCCCcCCCCccCCCceEeECCCCCEECc
Confidence            3689999999999999999 99999865

...

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.61  E-value=0.028  Score=54.43  Aligned_cols=125  Identities=16%  Similarity=0.263  Sum_probs=77.3

Q ss_pred             cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcC--CCCC-CceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258        299 NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFK--RDGT-TEQAIMPITDLKRPSVIDYHEKEEYIYYAEL  375 (440)
Q Consensus       299 ~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~--~~~~-~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~  375 (440)
                      .+..|+|+.+|+....     .+-|.++.+. .+.+....+.  +.+. .......+..-..+.|+++|...++||+++.
T Consensus       154 ~~~e~yGlcly~~~~~-----g~~ya~v~~k-~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE  227 (381)
T PF02333_consen  154 DLSEPYGLCLYRSPST-----GALYAFVNGK-DGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE  227 (381)
T ss_dssp             SSSSEEEEEEEE-TTT-------EEEEEEET-TSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET
T ss_pred             ccccceeeEEeecCCC-----CcEEEEEecC-CceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecC
Confidence            3445889999974331     1345555543 3666655553  3321 1122223333357889999999999999995


Q ss_pred             CCCeEEEEecC--C-CCeEEEEEC---CC-CCeeeEEEec---CCCcEEEEeCCCCeEEEEEeCC
Q psy14258        376 TSYVIERRKMF--G-RGKEVVIDT---GI-YNVEGMAVDW---MANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       376 ~~~~I~r~~~~--g-~~~~~~~~~---~~-~~~~glAvD~---~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                       ..-|+|+..+  + ..++.+...   ++ ..++||++=.   -.+.|..++.+.++..+++-.|
T Consensus       228 -~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  228 -DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             -TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             -ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence             5689999876  3 334444331   23 4789999832   2358999999999999999887

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.59  E-value=0.00021  Score=41.49  Aligned_cols=28  Identities=32%  Similarity=0.471  Sum_probs=24.8

Q ss_pred             CCCeeeEEEecCCCcEEEEeCCCCeEEEE
Q psy14258        398 IYNVEGMAVDWMANNLYWTDAGIGTINVA  426 (440)
Q Consensus       398 ~~~~~glAvD~~~~~lYwtd~~~~~I~~~  426 (440)
                      +..|.|||+| ..++||++|.++++|.++
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence            4679999999 588999999999999875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.0046  Score=60.08  Aligned_cols=154  Identities=17%  Similarity=0.156  Sum_probs=97.7

Q ss_pred             cccce--eeeecCCcEEEe-----------------ceEEEE--------ecCCceEEEEEcCCCCCceEEEEcCCCCeE
Q psy14258        134 LDGTE--RFPMVTHKIVYP-----------------EAIYFC--------THYMEHCMIAIDLNLSKPRGIALDPTSGYM  186 (440)
Q Consensus       134 ~~p~~--avD~~~~~lY~~-----------------~~I~~~--------~~dg~~~~~~~~~~~~~P~~iavd~~~g~l  186 (440)
                      .+..+  ++++.+ +||++                 ++|.+.        +.++...+ +.+.++.+|.|++.+|.+|.|
T Consensus       176 ~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~-i~s~G~RN~qGl~w~P~tg~L  253 (399)
T COG2133         176 HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSE-IWSYGHRNPQGLAWHPVTGAL  253 (399)
T ss_pred             CcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcc-eEEeccCCccceeecCCCCcE
Confidence            34455  999988 89999                 223333        33444433 345588999999999999999


Q ss_pred             EEEEcCCC-------CCcEE------------------EEeCCCCCceeEEe-----cCccCceEEEEeCCC------CE
Q psy14258        187 FFTKWGAT-------RPMLE------------------RSLLDGTERFPMVT-----HKIVYPYGVTVDFPT------KH  230 (440)
Q Consensus       187 ywtd~~~~-------~~~I~------------------r~~~dG~~~~~l~~-----~~~~~P~gl~vD~~~------~~  230 (440)
                      |.++.+.+       ...|+                  +...++.....+..     .....|.||++=..+      +.
T Consensus       254 w~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~  333 (399)
T COG2133         254 WTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD  333 (399)
T ss_pred             EEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc
Confidence            99998862       00110                  01111111111111     112347899984222      68


Q ss_pred             EEEEeCCCCcEEEEEccCCCc---EEEecCCccCceeeeeEecC-EEEEEecC-CCeEEEEecc
Q psy14258        231 VYWVDTYLDFIDRINYDGTDR---KTIRKGFPVQNLYDITVFEN-NLFVTSWR-NQSIIRVNKF  289 (440)
Q Consensus       231 ly~~d~~~~~i~~~~~dG~~~---~~i~~~~~~~~p~gl~~~~~-~ly~td~~-~~~i~~~~~~  289 (440)
                      ||++......+.+.+.+|...   +-++.+.....|.++++..| .||+++-. ++.|+|+...
T Consensus       334 lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~  397 (399)
T COG2133         334 LFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA  397 (399)
T ss_pred             EEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence            999988888888888888733   22233211268999999877 88888876 6799998763

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.35  E-value=0.0091  Score=60.96  Aligned_cols=156  Identities=9%  Similarity=-0.031  Sum_probs=94.3

Q ss_pred             EecCEEEEEecCCCeEEEEeccCCCceEEEe--cCCCCeEEEEe-----------ccCCCCCCCCCce-eEEeecCCccE
Q psy14258        268 VFENNLFVTSWRNQSIIRVNKFNSDDYETIA--NFSRPFAIHIY-----------HRQKQPDALKPST-FLLYAKGKPAI  333 (440)
Q Consensus       268 ~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~--~~~~p~~~~v~-----------~~~~qp~~~~~~~-~l~~~~~~~~~  333 (440)
                      +++.+||+-|-.+.+|-|++...-+.-+++.  +.....++...           .+.+-|.+  +++ .|..+....+.
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plp--nDGk~l~~~~ey~~~  216 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLP--NDGKDLDDPKKYRSL  216 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccC--CCCCEeecccceeEE
Confidence            5667999999999999999876554444332  22222232221           12222332  232 34444433466


Q ss_pred             EEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEE--C-CC---------------------------------
Q psy14258        334 IKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAE--L-TS---------------------------------  377 (440)
Q Consensus       334 I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d--~-~~---------------------------------  377 (440)
                      +..|+.+..    ++...+.--.+|..+++++.++++|++.  + ..                                 
T Consensus       217 vSvID~etm----eV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~  292 (635)
T PRK02888        217 FTAVDAETM----EVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT  292 (635)
T ss_pred             EEEEECccc----eEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence            677765543    3333333334899999999999999985  1 11                                 


Q ss_pred             ---CeEEEEecCC-----CCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        378 ---YVIERRKMFG-----RGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       378 ---~~I~r~~~~g-----~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                         ++|..++...     ......+..+ .+|.|+++.+.++.+|.++..+++|.|+++.-
T Consensus       293 V~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        293 IGGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             ECCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence               2222222221     1111112222 57999999999999999999999999999864

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.33  E-value=0.079  Score=49.12  Aligned_cols=208  Identities=11%  Similarity=0.106  Sum_probs=125.1

Q ss_pred             cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccce-ee-----ccccccce-eeeecCC-----
Q psy14258         78 TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM-LE-----RSLLDGTE-RFPMVTH-----  145 (440)
Q Consensus        78 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~-~~-----~~~~~p~~-avD~~~~-----  145 (440)
                      +.+  ++||++.+. +.++++|...+..-..+.+.......    ..+.++ +.     ..-..|.| .+..-..     
T Consensus        22 L~N--~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~----~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~   94 (336)
T TIGR03118        22 LRN--AWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLV----QDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG   94 (336)
T ss_pred             ccc--cceeEecCC-CCEEEecCCcceEEeecCCcccccCC----ccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence            667  999999985 57788887776543333331100000    001111 10     12246777 6653222     


Q ss_pred             --------cEEEe--ceEEEEecC--Cc---eEEEEEcCC--CCCceEEEEcCC--CCeEEEEEcCCCCCcEEEEeCCCC
Q psy14258        146 --------KIVYP--EAIYFCTHY--ME---HCMIAIDLN--LSKPRGIALDPT--SGYMFFTKWGATRPMLERSLLDGT  206 (440)
Q Consensus       146 --------~lY~~--~~I~~~~~d--g~---~~~~~~~~~--~~~P~~iavd~~--~g~lywtd~~~~~~~I~r~~~dG~  206 (440)
                              .||.+  ++|..-...  -.   ...+++...  -.--+|+|+-..  ..+||-+|...  ++|.+.+  ++
T Consensus        95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~--g~IDVFd--~~  170 (336)
T TIGR03118        95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQ--GRIDVFK--GS  170 (336)
T ss_pred             CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCC--CceEEec--Cc
Confidence                    23333  444443321  11   122333322  234567777644  57899999875  6998874  33


Q ss_pred             CceeEEec--------CccCceEEEEeCCCCEEEEEeCC-------------CCcEEEEEccCCCcEEEecCCccCceee
Q psy14258        207 ERFPMVTH--------KIVYPYGVTVDFPTKHVYWVDTY-------------LDFIDRINYDGTDRKTIRKGFPVQNLYD  265 (440)
Q Consensus       207 ~~~~l~~~--------~~~~P~gl~vD~~~~~ly~~d~~-------------~~~i~~~~~dG~~~~~i~~~~~~~~p~g  265 (440)
                      -++.-+..        .-..|.+|.-  .+++||++-.+             .+.|...+.+|.-++-+.++..|..|.|
T Consensus       171 f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG  248 (336)
T TIGR03118       171 FRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWG  248 (336)
T ss_pred             cccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCce
Confidence            33222111        1235777766  58999998542             3478889999998887777556999999


Q ss_pred             eeE-------ecCEEEEEecCCCeEEEEeccCCCceEEEe
Q psy14258        266 ITV-------FENNLFVTSWRNQSIIRVNKFNSDDYETIA  298 (440)
Q Consensus       266 l~~-------~~~~ly~td~~~~~i~~~~~~~g~~~~~~~  298 (440)
                      |++       +.+.|.+...++++|..++..+|+..-.+.
T Consensus       249 ~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       249 LAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             eeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence            998       356899999999999999988887655443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.29  E-value=0.16  Score=47.54  Aligned_cols=116  Identities=13%  Similarity=0.111  Sum_probs=65.2

Q ss_pred             ceEEEE--ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC----------CCCCceeEEe-----
Q psy14258        151 EAIYFC--THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL----------DGTERFPMVT-----  213 (440)
Q Consensus       151 ~~I~~~--~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~----------dG~~~~~l~~-----  213 (440)
                      +++...  +.+|..  .+....+.+|.|+++.+  ..||.+...    +|++..-          .+..-.-.+.     
T Consensus        28 gkL~~ig~~~~g~l--~~~~r~F~r~MGl~~~~--~~l~~~t~~----qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~   99 (335)
T TIGR03032        28 GKLFFIGLQPNGEL--DVFERTFPRPMGLAVSP--QSLTLGTRY----QLWRFANVDNLLPAGQTHPGYDRLYVPRASYV   99 (335)
T ss_pred             ceEEEEEeCCCCcE--EEEeeccCccceeeeeC--CeEEEEEcc----eeEEcccccccccccccCCCCCeEEeeeeeee
Confidence            444444  334542  23334678999999977  679988754    5666611          1111111111     


Q ss_pred             cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE--------EecCCccCceeeeeEecC-EEEEEe
Q psy14258        214 HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT--------IRKGFPVQNLYDITVFEN-NLFVTS  277 (440)
Q Consensus       214 ~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~--------i~~~~~~~~p~gl~~~~~-~ly~td  277 (440)
                      ++.-....|++  .++.+++++...+++-.++.+-+..-.        +.... -=|-+|+|+.++ --|+|-
T Consensus       100 TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eD-RCHLNGlA~~~g~p~yVTa  169 (335)
T TIGR03032       100 TGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPED-RCHLNGMALDDGEPRYVTA  169 (335)
T ss_pred             ccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccC-ceeecceeeeCCeEEEEEE
Confidence            11112234666  577899999888888888876654321        11111 236789998877 445554

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.27  E-value=0.12  Score=50.13  Aligned_cols=194  Identities=11%  Similarity=0.034  Sum_probs=97.5

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCcee-eeee-cccceEEEEEee--ecccE---EEEEEcCC--CCceeEEeCCCCCc
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEG-LSFL-TFAQEAIYFCTH--YMEHC---MIAIDLNL--SKPRGIALDPTSGY  116 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~-~~~~-~~~~~~~~i~~d--~~~~~---ly~~d~~~--~~I~~~~~~~~~~~  116 (440)
                      +.++++.+.++   +-+...+|+|.... +... .+|   +.+-++  ..+++   +..++...  ++|....++.... 
T Consensus        67 ~kSlIigTdK~---~GL~VYdL~Gk~lq~~~~Gr~NN---VDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g-  139 (381)
T PF02333_consen   67 AKSLIIGTDKK---GGLYVYDLDGKELQSLPVGRPNN---VDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG-  139 (381)
T ss_dssp             GG-EEEEEETT---TEEEEEETTS-EEEEE-SS-EEE---EEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT-
T ss_pred             ccceEEEEeCC---CCEEEEcCCCcEEEeecCCCcce---eeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC-
Confidence            55677777654   34888899998776 3222 111   112111  11222   23344332  3344344443211 


Q ss_pred             ceeeccccccceeeccccccce-eee--ecCCcEEEe-----ceEEEEec----CCceEEEEEc--CCCCCceEEEEcCC
Q psy14258        117 MFFTKWGATRPMLERSLLDGTE-RFP--MVTHKIVYP-----EAIYFCTH----YMEHCMIAID--LNLSKPRGIALDPT  182 (440)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~p~~-avD--~~~~~lY~~-----~~I~~~~~----dg~~~~~~~~--~~~~~P~~iavd~~  182 (440)
                      .+...+. ....+...+..|.| ++-  ..++.+|..     +.++...+    +|...-.++.  .--.+|+|+++|.+
T Consensus       140 ~L~~v~~-~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe  218 (381)
T PF02333_consen  140 ELTDVTD-PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE  218 (381)
T ss_dssp             EEEE-CB-TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred             cceEcCC-CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence            1111011 11123456777889 874  456778866     44444433    3332222332  12258999999999


Q ss_pred             CCeEEEEEcCCCCCcEEEEeCC---CCCceeEEec---Cc-cCceEEEEeC---CCCEEEEEeCCCCcEEEEEccCCC
Q psy14258        183 SGYMFFTKWGATRPMLERSLLD---GTERFPMVTH---KI-VYPYGVTVDF---PTKHVYWVDTYLDFIDRINYDGTD  250 (440)
Q Consensus       183 ~g~lywtd~~~~~~~I~r~~~d---G~~~~~l~~~---~~-~~P~gl~vD~---~~~~ly~~d~~~~~i~~~~~dG~~  250 (440)
                      .|+||+.+..   ..|++...+   +..++.+...   .+ .-..||+|=.   ..+.|..++.+.+.....+..+.+
T Consensus       219 ~g~LYvgEE~---~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~  293 (381)
T PF02333_consen  219 TGRLYVGEED---VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN  293 (381)
T ss_dssp             TTEEEEEETT---TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred             cCCEEEecCc---cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence            9999999987   489999986   3334333221   12 3577888832   345777777777777777666543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.11  E-value=0.2  Score=50.38  Aligned_cols=196  Identities=9%  Similarity=0.032  Sum_probs=114.1

Q ss_pred             eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258         62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  138 (440)
Q Consensus        62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~  138 (440)
                      |...+.+|.... +.-....  +..+.+.+.+++|.++....  ..|+..++.+.....           +...-..-..
T Consensus       186 i~i~d~dg~~~~~lt~~~~~--v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----------l~~~~g~~~~  252 (429)
T PRK01742        186 VRVADYDGFNQFIVNRSSQP--LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----------VASFRGHNGA  252 (429)
T ss_pred             EEEECCCCCCceEeccCCCc--cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----------EecCCCccCc
Confidence            777777777644 2221222  78889999999998875432  357766665432111           1111112234


Q ss_pred             -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258        139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM  211 (440)
Q Consensus       139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l  211 (440)
                       ++.+.++.|+++      ..|++.++++...+.+.. ........+..|...+|+++.......+|+..+.+|...+.+
T Consensus       253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence             677778888887      257788888776665543 333456788888666677765332227899999887765443


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEec
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSW  278 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~  278 (440)
                       ... .  ...++.+.++.|+++..  +.+..+++.+.....+.... .......+-++..|+++..
T Consensus       332 -~~~-~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        332 -GGR-G--YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             -cCC-C--CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEc
Confidence             221 1  23567777888887754  56777887665544443321 1111122333446666654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.13  Score=44.97  Aligned_cols=193  Identities=11%  Similarity=0.083  Sum_probs=105.1

Q ss_pred             ceEEEEeCCCCEEEEEeC--CCCcEEEEEccCCCcEEEecCCccC----ceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258        219 PYGVTVDFPTKHVYWVDT--YLDFIDRINYDGTDRKTIRKGFPVQ----NLYDITVFENNLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~--~~~~i~~~~~dG~~~~~i~~~~~~~----~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~  292 (440)
                      -.||..+  ++.+|-+-.  +.++|++.++++...  +.+. .+.    .-.|++.-++++|.-.|..+.-++.++.+-+
T Consensus        48 TQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~--~~s~-~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~  122 (262)
T COG3823          48 TQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQE--IFSE-KLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE  122 (262)
T ss_pred             hcceeee--CCEEEEeccccccceeEEEeccCceE--EEEe-ecCCccccccceeeccceEEEEEeccceeEEEChHHhh
Confidence            4577775  567777654  445888888885432  2221 122    2358888999999999998888888876544


Q ss_pred             ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccE-EEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEE
Q psy14258        293 DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAI-IKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY  371 (440)
Q Consensus       293 ~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~-I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy  371 (440)
                      +.-.+.-...-.++.-......  ..+...+|.+-|....+ +.++...      .--.|+..+.     ...++++.||
T Consensus       123 ~lg~~~y~GeGWgLt~d~~~Li--msdGsatL~frdP~tfa~~~~v~VT------~~g~pv~~LN-----ELE~VdG~ly  189 (262)
T COG3823         123 ELGRFSYEGEGWGLTSDDKNLI--MSDGSATLQFRDPKTFAELDTVQVT------DDGVPVSKLN-----ELEWVDGELY  189 (262)
T ss_pred             hhcccccCCcceeeecCCcceE--eeCCceEEEecCHHHhhhcceEEEE------ECCeeccccc-----ceeeeccEEE
Confidence            3322221112334433311000  00112333333221110 0111110      0012333332     2345678888


Q ss_pred             EEECCCCeEEEEecCCCCeEEEEE------------CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        372 YAELTSYVIERRKMFGRGKEVVID------------TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       372 ~~d~~~~~I~r~~~~g~~~~~~~~------------~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      =.=..+.+|.|++++.......+.            ...+-++|||.|+..+++|.|--.--.+.-+++.
T Consensus       190 ANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~  259 (262)
T COG3823         190 ANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLD  259 (262)
T ss_pred             EeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEEec
Confidence            666678899999998754443332            1224589999999999999996433344444443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.05  E-value=0.002  Score=37.32  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=24.1

Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEE
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDR  243 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~  243 (440)
                      +..|.||++| .++.||++|.+.++|..
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence            3579999999 99999999999998875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=96.99  E-value=0.00051  Score=44.22  Aligned_cols=32  Identities=38%  Similarity=0.735  Sum_probs=27.7

Q ss_pred             ecccCCC-CCCCC--CCcccCCCceEEc-cCCeeee
Q psy14258         13 DADECLI-DGSCD--QTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        13 d~~~C~~-~~~Cs--~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      |+|||.. ...|.  +.|.|+.|+|+|. ++||...
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~   36 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN   36 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence            7899996 45887  6999999999999 9999853

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.34  Score=44.68  Aligned_cols=218  Identities=10%  Similarity=0.064  Sum_probs=123.7

Q ss_pred             EEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce---eeeecCCcEEEe---ceEEEEec
Q psy14258         85 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE---RFPMVTHKIVYP---EAIYFCTH  158 (440)
Q Consensus        85 ~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~---avD~~~~~lY~~---~~I~~~~~  158 (440)
                      ..|+-..++++|++|..++ ++.+++  +..+.       +.  + .+.-.-.|   -++--++..|++   .-....++
T Consensus        89 ~~Dv~vse~yvyvad~ssG-L~IvDI--S~P~s-------P~--~-~~~lnt~gyaygv~vsGn~aYVadlddgfLivdv  155 (370)
T COG5276          89 FADVRVSEEYVYVADWSSG-LRIVDI--STPDS-------PT--L-IGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDV  155 (370)
T ss_pred             hheeEecccEEEEEcCCCc-eEEEec--cCCCC-------cc--e-eccccCCceEEEEEecCCEEEEeeccCcEEEEEC
Confidence            3455567899999998765 333333  33222       11  1 12222224   344457778888   34444555


Q ss_pred             CCceEEEEEcCCCCC----ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEE
Q psy14258        159 YMEHCMIAIDLNLSK----PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV  234 (440)
Q Consensus       159 dg~~~~~~~~~~~~~----P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~  234 (440)
                      .....-++.. ....    -..+++.-  .+-|.+.++   ..+...+..-....+++..--.-|.--++-+..+|.|.+
T Consensus       156 sdpssP~lag-rya~~~~d~~~v~ISG--n~AYvA~~d---~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v  229 (370)
T COG5276         156 SDPSSPQLAG-RYALPGGDTHDVAISG--NYAYVAWRD---GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV  229 (370)
T ss_pred             CCCCCceeee-eeccCCCCceeEEEec--CeEEEEEeC---CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE
Confidence            4433333322 2222    24677744  678888777   367777776655555655422233444555578999999


Q ss_pred             eCCCCcEEEEEccCCCcEEEecCCccCceeee---eEecCEEEEEecCCCeEEEEeccCCCceEEEecCC----CCeEEE
Q psy14258        235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDI---TVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFS----RPFAIH  307 (440)
Q Consensus       235 d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl---~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~----~p~~~~  307 (440)
                      +... -+.-++.++...-++.....-..|.++   .+.+++.|+.|... .+..++..+.....+.....    +..++.
T Consensus       230 vy~e-gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~-gl~~idisnp~spfl~ss~~t~g~~a~gi~  307 (370)
T COG5276         230 VYDE-GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAK-GLPIIDISNPPSPFLSSSLDTAGYQAAGIR  307 (370)
T ss_pred             Eccc-ceEEEecCCCCCceEeeccccCCcccccceecccceeeeecccc-CceeEeccCCCCCchhccccCCCccccceE
Confidence            8654 466777777554444432224567666   78899999999643 34445544433333332222    344566


Q ss_pred             EeccCCCCCCCCCceeEEeecCCccEE
Q psy14258        308 IYHRQKQPDALKPSTFLLYAKGKPAII  334 (440)
Q Consensus       308 v~~~~~qp~~~~~~~~l~~~~~~~~~I  334 (440)
                      ++           +.|+++++.+.+.+
T Consensus       308 ay-----------~~y~yiadkn~g~v  323 (370)
T COG5276         308 AY-----------GNYNYIADKNTGAV  323 (370)
T ss_pred             Ee-----------cCeeEeccCCceEE
Confidence            66           68899998865544

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.76  E-value=0.22  Score=51.23  Aligned_cols=182  Identities=10%  Similarity=-0.030  Sum_probs=98.2

Q ss_pred             eecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eee--ecCCcEEEe---------------
Q psy14258         89 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFP--MVTHKIVYP---------------  150 (440)
Q Consensus        89 d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD--~~~~~lY~~---------------  150 (440)
                      .+.++.||.-|..+.+|-|++++.=..+.         ++-........| ++.  +.++.+|..               
T Consensus       138 ~ydGr~~findk~n~Rvari~l~~~~~~~---------i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~  208 (635)
T PRK02888        138 TYDGRYLFINDKANTRVARIRLDVMKCDK---------ITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLD  208 (635)
T ss_pred             ccceeEEEEecCCCcceEEEECccEeece---------eEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEee
Confidence            34578899999999998888876322111         222244445555 554  333333322               


Q ss_pred             ------ceEEEEecCCceE--EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCC-CcEEEEeCCCCCceeEEecCccCceE
Q psy14258        151 ------EAIYFCTHYMEHC--MIAIDLNLSKPRGIALDPTSGYMFFTKWGATR-PMLERSLLDGTERFPMVTHKIVYPYG  221 (440)
Q Consensus       151 ------~~I~~~~~dg~~~--~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~-~~I~r~~~dG~~~~~l~~~~~~~P~g  221 (440)
                            +.+.+.+.+....  .+.+   -.+|+.++++|..+++|+|..+... ..+..++.  ..+..++.-  .++..
T Consensus       209 ~~~ey~~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a--~e~d~~vvf--ni~~i  281 (635)
T PRK02888        209 DPKKYRSLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA--AERDWVVVF--NIARI  281 (635)
T ss_pred             cccceeEEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeecc--ccCceEEEE--chHHH
Confidence                  3344444443211  1111   1489999999988899999643320 22332222  222222211  11111


Q ss_pred             EEEeCCCCEEEEEeCCCCcEEEEEccC-----CC-cEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCC
Q psy14258        222 VTVDFPTKHVYWVDTYLDFIDRINYDG-----TD-RKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       222 l~vD~~~~~ly~~d~~~~~i~~~~~dG-----~~-~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~  292 (440)
                      -++-..++..|+   ..+++-.+|...     .. ...|..   -..|.|+++..|  ++|.+..-++.|..++....+
T Consensus       282 ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        282 EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            122223555554   245677776432     11 223333   357999998754  999999988998888875543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.59  E-value=0.83  Score=44.80  Aligned_cols=255  Identities=11%  Similarity=0.100  Sum_probs=133.7

Q ss_pred             ceEEEEecCCceEEEEEcC--CCCCceEEEEcCCCCeEEEE-EcCCCCCcEEEEeCCCCCceeEEecCccCceE------
Q psy14258        151 EAIYFCTHYMEHCMIAIDL--NLSKPRGIALDPTSGYMFFT-KWGATRPMLERSLLDGTERFPMVTHKIVYPYG------  221 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~--~~~~P~~iavd~~~g~lywt-d~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~g------  221 (440)
                      +.|+...-.|+.-+.++.-  ....|  +.|   .+++|+. |...- +.|+..++||...+.=..-.-.+|.-      
T Consensus       206 GklWis~d~g~tFeK~vdl~~~vS~P--mIV---~~RvYFlsD~eG~-GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGk  279 (668)
T COG4946         206 GKLWISSDGGKTFEKFVDLDGNVSSP--MIV---GERVYFLSDHEGV-GNLYSVDLDGKDLRRHTNFTDYYPRNANSDGK  279 (668)
T ss_pred             ceEEEEecCCcceeeeeecCCCcCCc--eEE---cceEEEEecccCc-cceEEeccCCchhhhcCCchhccccccCCCCc
Confidence            5677777677555555542  23334  333   4566664 55544 89999999998654322111223332      


Q ss_pred             -EEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCCccCce----eeeeEecCEEEEEecCCCeEEEEeccCCCceE
Q psy14258        222 -VTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGFPVQNL----YDITVFENNLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       222 -l~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~~~~~p----~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                       |.+. .++.+|.-|..+.++++++++ -..+..-..  .+..|    ...++..+..+..- ..++.+.++...|-..+
T Consensus       280 rIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~--k~~~pskyledfa~~~Gd~ia~V-SRGkaFi~~~~~~~~iq  355 (668)
T COG4946         280 RIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQP--KFVNPSKYLEDFAVVNGDYIALV-SRGKAFIMRPWDGYSIQ  355 (668)
T ss_pred             EEEEe-cCCcEEEeCCCcCcceeeecCCccccccccc--cccCHHHhhhhhccCCCcEEEEE-ecCcEEEECCCCCeeEE
Confidence             3333 556677777777777777765 222111000  01222    22333333222222 24556666655443333


Q ss_pred             EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258        296 TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL  375 (440)
Q Consensus       296 ~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~  375 (440)
                      +-    .+.++.-.+-+.-     ++. +++++.....+-..+.++.    ++.....++.+..++.+++.++++.+++ 
T Consensus       356 v~----~~~~VrY~r~~~~-----~e~-~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaN-  420 (668)
T COG4946         356 VG----KKGGVRYRRIQVD-----PEG-DVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVAN-  420 (668)
T ss_pred             cC----CCCceEEEEEccC-----Ccc-eEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEc-
Confidence            22    2333332222221     232 2232222235666666666    4444556778889999999888887776 


Q ss_pred             CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC---CCCeEEEEEeCC
Q psy14258        376 TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA---GIGTINVAKISD  430 (440)
Q Consensus       376 ~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~---~~~~I~~~~~~g  430 (440)
                      ....|..++++..+.+.+=....+...+++.-+.++.|=.+=.   -+..|..++++|
T Consensus       421 dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         421 DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            4678999999866655543333344455554444444322211   134678888777

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.54  Score=41.28  Aligned_cols=191  Identities=13%  Similarity=0.118  Sum_probs=105.9

Q ss_pred             CCcEEEe------ceEEEEecCCceEEEEEcCCCC----CceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe
Q psy14258        144 THKIVYP------EAIYFCTHYMEHCMIAIDLNLS----KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT  213 (440)
Q Consensus       144 ~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~----~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~  213 (440)
                      ++++|-+      .+|.+.++.+...  +.+..+.    .-.||+.  ...++|--.|..  +.-...+.|.-  +.+-.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~--~~s~~l~~~~~FgEGit~--~gd~~y~LTw~e--gvaf~~d~~t~--~~lg~  126 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQE--IFSEKLAPDTVFGEGITK--LGDYFYQLTWKE--GVAFKYDADTL--EELGR  126 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceE--EEEeecCCccccccceee--ccceEEEEEecc--ceeEEEChHHh--hhhcc
Confidence            4567776      5789999985442  2333333    2356665  246677666665  24444444321  11111


Q ss_pred             cC-ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC----CCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEec
Q psy14258        214 HK-IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG----TDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNK  288 (440)
Q Consensus       214 ~~-~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG----~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~  288 (440)
                      -+ -+.-.||+-|  ..+|..+| ++..+..-+...    ..+.+-..+..+..-.-+..-.+.||---|.+.+|.++++
T Consensus       127 ~~y~GeGWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p  203 (262)
T COG3823         127 FSYEGEGWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDP  203 (262)
T ss_pred             cccCCcceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcC
Confidence            00 1223477775  55555554 444444433211    1112222233344455677778899999999999999999


Q ss_pred             cCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCC
Q psy14258        289 FNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE  368 (440)
Q Consensus       289 ~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~  368 (440)
                      .+|+....+.-..           .++                    -+++++.           ...-+.|||||+..+
T Consensus       204 ~sGrV~~widlS~-----------L~~--------------------~~~~~~~-----------~~nvlNGIA~~~~~~  241 (262)
T COG3823         204 DSGRVVAWIDLSG-----------LLK--------------------ELNLDKS-----------NDNVLNGIAHDPQQD  241 (262)
T ss_pred             CCCcEEEEEEccC-----------Cch--------------------hcCcccc-----------ccccccceeecCcCC
Confidence            9887665332100           000                    0111111           123478999999999


Q ss_pred             EEEEEECCCCeEEEEecCC
Q psy14258        369 YIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       369 ~vy~~d~~~~~I~r~~~~g  387 (440)
                      ++|++-..=-.++.+.+.+
T Consensus       242 r~~iTGK~wp~lfEVk~~~  260 (262)
T COG3823         242 RFLITGKLWPLLFEVKLDE  260 (262)
T ss_pred             eEEEecCcCceeEEEEecC
Confidence            9999976555677666654

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.47  E-value=0.79  Score=43.02  Aligned_cols=254  Identities=8%  Similarity=0.001  Sum_probs=131.4

Q ss_pred             ceeEEEEeecccceeeeEEEecCCC-ceeeeee-cccceEEEEEeeecccEEEEEEcCCCCceeEEeC------CCCCcc
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEW-DEGLSFL-TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALD------PTSGYM  117 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~-~~~~~~~-~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~------~~~~~~  117 (440)
                      .-+|.+++-+.   +++..+.++.. ...+... +..  +.|++.+.  ++||.+...  .|++....      +.....
T Consensus        17 ~~Sla~sTYQa---gkL~~ig~~~~g~l~~~~r~F~r--~MGl~~~~--~~l~~~t~~--qiw~f~~~~n~l~~~~~~~~   87 (335)
T TIGR03032        17 KLSLAVTTYQA---GKLFFIGLQPNGELDVFERTFPR--PMGLAVSP--QSLTLGTRY--QLWRFANVDNLLPAGQTHPG   87 (335)
T ss_pred             CeEEEEEeeec---ceEEEEEeCCCCcEEEEeeccCc--cceeeeeC--CeEEEEEcc--eeEEcccccccccccccCCC
Confidence            34566766544   44666655422 1222222 333  88888764  789988774  56655111      000011


Q ss_pred             eeeccccccceeeccccccce-eeeecCCcEEEeceEEEE--ecCCceE----------EEEEcCCCCCceEEEEcCCCC
Q psy14258        118 FFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYPEAIYFC--THYMEHC----------MIAIDLNLSKPRGIALDPTSG  184 (440)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~~~I~~~--~~dg~~~----------~~~~~~~~~~P~~iavd~~~g  184 (440)
                      ...--..+...+ ++--.... |+  ..+.+++.++.+.|  .++....          ..+..++-=+-.|+|++- ..
T Consensus        88 ~D~~yvPr~~~~-TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~  163 (335)
T TIGR03032        88 YDRLYVPRASYV-TGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GE  163 (335)
T ss_pred             CCeEEeeeeeee-ccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-Ce
Confidence            100001111112 22224454 54  45556666333332  3333221          111122333577999964 33


Q ss_pred             eEEEEEcCCC-CCcEEEEeC-CCCCc-----eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC
Q psy14258        185 YMFFTKWGAT-RPMLERSLL-DGTER-----FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG  257 (440)
Q Consensus       185 ~lywtd~~~~-~~~I~r~~~-dG~~~-----~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~  257 (440)
                      --|+|-.+.. .+.=+|-.. +|.-.     -+++.+++..|.+.-.  .+++||++|.+.+.+.+++.+.+..+.+..-
T Consensus       164 p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~v  241 (335)
T TIGR03032       164 PRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFL  241 (335)
T ss_pred             EEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEEC
Confidence            4666654331 122233222 22110     1234456778888888  5899999999999999999985555555542


Q ss_pred             CccCceeeeeEecCEEEEEecCCC-------------------eEEEEeccCCCceEEEe---cCCCCeEEEEeccCCCC
Q psy14258        258 FPVQNLYDITVFENNLFVTSWRNQ-------------------SIIRVNKFNSDDYETIA---NFSRPFAIHIYHRQKQP  315 (440)
Q Consensus       258 ~~~~~p~gl~~~~~~ly~td~~~~-------------------~i~~~~~~~g~~~~~~~---~~~~p~~~~v~~~~~qp  315 (440)
                        -..|.||++.++.++++-+...                   .|+.+|..+|.....+.   .....+++++.-..++|
T Consensus       242 --pG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P  319 (335)
T TIGR03032       242 --PGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRP  319 (335)
T ss_pred             --CCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCc
Confidence              2479999999888888754321                   25555665555444221   22234556555444554


Q ss_pred             C
Q psy14258        316 D  316 (440)
Q Consensus       316 ~  316 (440)
                      .
T Consensus       320 ~  320 (335)
T TIGR03032       320 E  320 (335)
T ss_pred             c
Confidence            3

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.19  E-value=1.2  Score=42.42  Aligned_cols=258  Identities=14%  Similarity=0.142  Sum_probs=135.9

Q ss_pred             ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-------CCcEEEEeCCCCCc--eeEEec-----Cc
Q psy14258        151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-------RPMLERSLLDGTER--FPMVTH-----KI  216 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-------~~~I~r~~~dG~~~--~~l~~~-----~~  216 (440)
                      +++.+.+-|.....-.+..++  --.+++.|.++.+|.++..-+       ..-|+..+...-..  ++.+..     .+
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            577777766554433333333  334778898888998763110       01244444433211  112221     13


Q ss_pred             cCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCCc-EEEecCCccCceeeeeEe-cCEEEEEecCCCeEEEEeccC-CC
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTDR-KTIRKGFPVQNLYDITVF-ENNLFVTSWRNQSIIRVNKFN-SD  292 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~-~~~ly~td~~~~~i~~~~~~~-g~  292 (440)
                      .+++-+++...++++|+.+.. ...|..+|+..... ..+.    .+...++-=. ++. |.+--..+++..+.... |+
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~----~PGC~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID----TPGCWLIYPSGNRG-FSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE----GTSEEEEEEEETTE-EEEEETTSCEEEEEETSTSS
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec----CCCEEEEEecCCCc-eEEEecCCceEEEEECCCCC
Confidence            456677887789999998854 34888888876543 2222    2222333222 334 44555678888777663 54


Q ss_pred             ceEEEecCCCCeEEEEeccCCCCCCCCC------ceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC--------Cc
Q psy14258        293 DYETIANFSRPFAIHIYHRQKQPDALKP------STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK--------RP  358 (440)
Q Consensus       293 ~~~~~~~~~~p~~~~v~~~~~qp~~~~~------~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~--------~p  358 (440)
                      +.....        .+|++...|....|      ..++|.+-.  +.|+.+++.+....  ...+..-+.        +|
T Consensus       170 ~~~~~t--------~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~--G~v~~~dlsg~~~~--~~~~~~~~t~~e~~~~WrP  237 (342)
T PF06433_consen  170 EAQKST--------KVFDPDDDPLFEHPAYSRDGGRLYFVSYE--GNVYSADLSGDSAK--FGKPWSLLTDAEKADGWRP  237 (342)
T ss_dssp             EEEEEE--------EESSTTTS-B-S--EEETTTTEEEEEBTT--SEEEEEEETTSSEE--EEEEEESS-HHHHHTTEEE
T ss_pred             EeEeec--------cccCCCCcccccccceECCCCeEEEEecC--CEEEEEeccCCccc--ccCcccccCccccccCcCC
Confidence            432211        35666666544322      245666555  99999999887211  111221111        33


Q ss_pred             e---EEEEEcCCCEEEEEE---------CCCCeEEEEecCCCCeEEEEECCCC-CeeeEEEecCCC-cEEEEeCCCCeEE
Q psy14258        359 S---VIDYHEKEEYIYYAE---------LTSYVIERRKMFGRGKEVVIDTGIY-NVEGMAVDWMAN-NLYWTDAGIGTIN  424 (440)
Q Consensus       359 ~---~l~~d~~~~~vy~~d---------~~~~~I~r~~~~g~~~~~~~~~~~~-~~~glAvD~~~~-~lYwtd~~~~~I~  424 (440)
                      .   -+|+++..++||+.=         .....|+.+++....+-.-+.  +. ....|+|--..+ .||-++.+.+.+.
T Consensus       238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~  315 (342)
T PF06433_consen  238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLD  315 (342)
T ss_dssp             -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEE
T ss_pred             cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEE
Confidence            3   489999999999872         112357777776533222121  11 233666665444 6776777777777


Q ss_pred             EEEeC
Q psy14258        425 VAKIS  429 (440)
Q Consensus       425 ~~~~~  429 (440)
                      +++..
T Consensus       316 v~D~~  320 (342)
T PF06433_consen  316 VYDAA  320 (342)
T ss_dssp             EEETT
T ss_pred             EEeCc
Confidence            77744

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.73  E-value=2  Score=41.03  Aligned_cols=280  Identities=10%  Similarity=0.041  Sum_probs=133.9

Q ss_pred             eeEEEecCCCcee--eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEe-------CCCCCcceeeccccccceeec
Q psy14258         61 CFGPMDIEEWDEG--LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIAL-------DPTSGYMFFTKWGATRPMLER  131 (440)
Q Consensus        61 ~I~~~~l~~~~~~--~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~-------~~~~~~~~~~~~~~~~v~~~~  131 (440)
                      ++..++.+....-  +......    .+.+++.++.+|.++..-.|+-|...       +...+..      ..++.+-.
T Consensus        18 rv~viD~d~~k~lGmi~~g~~~----~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~------~~EI~iP~   87 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTGFLG----NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP------TGEIEIPP   87 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEESSE----EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE------EEEEEETT
T ss_pred             eEEEEECCCCcEEEEeecccCC----ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc------cceEecCC
Confidence            3666666655443  3333322    24567888999988876555444332       2222211      11222211


Q ss_pred             -----cccccce-eeeecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEE
Q psy14258        132 -----SLLDGTE-RFPMVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLER  200 (440)
Q Consensus       132 -----~~~~p~~-avD~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r  200 (440)
                           .+..+.. ++-..++.+|+.     ..|.+.++.......-+.    .|-.--+-|....=|.+-=+.  +++..
T Consensus        88 k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~----~PGC~~iyP~~~~~F~~lC~D--Gsl~~  161 (342)
T PF06433_consen   88 KPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID----TPGCWLIYPSGNRGFSMLCGD--GSLLT  161 (342)
T ss_dssp             S-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE----GTSEEEEEEEETTEEEEEETT--SCEEE
T ss_pred             cchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec----CCCEEEEEecCCCceEEEecC--CceEE
Confidence                 1344555 787788889988     789999998876433332    233322223221223332222  57777


Q ss_pred             EeCCCCCceeEEecCccCc------eEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccC--------ceee-
Q psy14258        201 SLLDGTERFPMVTHKIVYP------YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQ--------NLYD-  265 (440)
Q Consensus       201 ~~~dG~~~~~l~~~~~~~P------~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~--------~p~g-  265 (440)
                      ..+|-........+.+..|      +--+.+..++++||.. ..+.|+.+++.|...+....-..+.        .|=| 
T Consensus       162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~  240 (342)
T PF06433_consen  162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW  240 (342)
T ss_dssp             EEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred             EEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence            7776433333222211111      1113344678899975 6789999999988765543210000        1211 


Q ss_pred             --eeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCC-ccEEEEEEcC
Q psy14258        266 --ITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK-PAIIKGLTFK  340 (440)
Q Consensus       266 --l~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~-~~~I~~i~~~  340 (440)
                        ++++  .++||+.-.           .|.+                ...+     +|...+.+-|.. ..+|.|+++.
T Consensus       241 Q~~A~~~~~~rlyvLMh-----------~g~~----------------gsHK-----dpgteVWv~D~~t~krv~Ri~l~  288 (342)
T PF06433_consen  241 QLIAYHAASGRLYVLMH-----------QGGE----------------GSHK-----DPGTEVWVYDLKTHKRVARIPLE  288 (342)
T ss_dssp             S-EEEETTTTEEEEEEE-----------E--T----------------T-TT-----S-EEEEEEEETTTTEEEEEEEEE
T ss_pred             eeeeeccccCeEEEEec-----------CCCC----------------CCcc-----CCceEEEEEECCCCeEEEEEeCC
Confidence              2222  234444211           0000                0000     122333333332 2678888876


Q ss_pred             CCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeE-EEEecCCCCeEEE
Q psy14258        341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI-ERRKMFGRGKEVV  393 (440)
Q Consensus       341 ~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I-~r~~~~g~~~~~~  393 (440)
                      ..    -..+.+..-..|.=++.+..++.|++-|..++.. .++.--|.....+
T Consensus       289 ~~----~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~  338 (342)
T PF06433_consen  289 HP----IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLI  338 (342)
T ss_dssp             EE----ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EE
T ss_pred             Cc----cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEE
Confidence            54    2234555556777777777778888888776653 3333334444333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0292|consensus

Probab=95.65  E-value=3.7  Score=43.65  Aligned_cols=303  Identities=10%  Similarity=0.019  Sum_probs=166.0

Q ss_pred             ceEEEEEeeecccEEEEEEcCCCCceeEEeCCC-CCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEE
Q psy14258         81 QEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPT-SGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIY  154 (440)
Q Consensus        81 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~  154 (440)
                      +++.|++|+|..-.| .+...++.|+.-+.... -++.+           .+.-+-.+| ++-+... ||++    ..|.
T Consensus        10 sRvKglsFHP~rPwI-LtslHsG~IQlWDYRM~tli~rF-----------deHdGpVRgv~FH~~qp-lFVSGGDDykIk   76 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWI-LTSLHSGVIQLWDYRMGTLIDRF-----------DEHDGPVRGVDFHPTQP-LFVSGGDDYKIK   76 (1202)
T ss_pred             ccccceecCCCCCEE-EEeecCceeeeehhhhhhHHhhh-----------hccCCccceeeecCCCC-eEEecCCccEEE
Confidence            458899999875544 44455677765544322 22221           233445677 7765544 8988    5788


Q ss_pred             EEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEE
Q psy14258        155 FCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV  234 (440)
Q Consensus       155 ~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~  234 (440)
                      |-+.+...|.--+.+.++..+-+.+.++-=+|.=+...   ..|...++...+-..++..--.+...-.+.|. ..|.++
T Consensus        77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDD---QTIrIWNwqsr~~iavltGHnHYVMcAqFhpt-EDlIVS  152 (1202)
T KOG0292|consen   77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDD---QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT-EDLIVS  152 (1202)
T ss_pred             EEecccceehhhhccccceeEEeeccCCCceEEEccCC---CeEEEEeccCCceEEEEecCceEEEeeccCCc-cceEEE
Confidence            88888877754444577888888888765554433322   47777777655544444443344555556533 445555


Q ss_pred             eCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceE---EEecCCCCeEEEEecc
Q psy14258        235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE---TIANFSRPFAIHIYHR  311 (440)
Q Consensus       235 d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~---~~~~~~~p~~~~v~~~  311 (440)
                      -+-.++|+.-|+.|-..+....+..-.++.|....                .+.+++....   ++.+-.+-..-+.|||
T Consensus       153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~----------------~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN----------------SDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             ecccceEEEEeecchhccCCCCCCchhhhhccccc----------------hhhcCCcCeeeeeeecccccccceEEecC
Confidence            56666777777777444333222100111111110                1122221211   1222122223345664


Q ss_pred             CCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC-Ce
Q psy14258        312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR-GK  390 (440)
Q Consensus       312 ~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~-~~  390 (440)
                      ...         |+++-+....|....++-+ ..-++-..-....+..++-|+|..+ +..++...++|+.-+++-. ..
T Consensus       217 Tlp---------liVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  217 TLP---------LIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             Ccc---------eEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccce
Confidence            442         6665444445544444444 2223333334455677899999766 7789889999999999852 23


Q ss_pred             EEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        391 EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       391 ~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +++-- .-+...=||.-+ ..|||-+-..++ +.|+.++-
T Consensus       286 ~tfrr-endRFW~laahP-~lNLfAAgHDsG-m~VFkleR  322 (1202)
T KOG0292|consen  286 QTFRR-ENDRFWILAAHP-ELNLFAAGHDSG-MIVFKLER  322 (1202)
T ss_pred             eeeec-cCCeEEEEEecC-CcceeeeecCCc-eEEEEEcc
Confidence            33322 234555666664 456776655443 66666653

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.62  E-value=0.048  Score=41.02  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=32.8

Q ss_pred             EEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        393 VIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       393 ~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      .+..++..|.||++|+..+.||+++...+.|.++...
T Consensus        48 ~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   48 VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            3456899999999999999999999999999998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0318|consensus

Probab=94.70  E-value=5.2  Score=39.97  Aligned_cols=194  Identities=15%  Similarity=0.112  Sum_probs=114.3

Q ss_pred             CccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCCccCceeeeeEec-CEEEEEecCCCeEEEEeccCCC
Q psy14258        215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       215 ~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g~  292 (440)
                      -......|++.+.+..||-++ ..+.|..=+.. |..-+...+. .-....+++..+ +.||-..| .+.+.++....+.
T Consensus       319 HnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~-h~nqI~~~~~~~~~~~~t~g~-Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  319 HNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKG-HTNQIKGMAASESGELFTIGW-DDTLRVISLKDNG  395 (603)
T ss_pred             cccceeEEEEcCCCCEEEeec-cCceEEEEecCCcccccccccc-ccceEEEEeecCCCcEEEEec-CCeEEEEecccCc
Confidence            345567899988887787665 45666666543 3222222221 244677888888 67776666 6677776543221


Q ss_pred             c--eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258        293 D--YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI  370 (440)
Q Consensus       293 ~--~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v  370 (440)
                      -  ...+.-..+|.++++..         ++..++++..  ..|..+.-.+.    ...+++.  -+|.++|+.+.+..+
T Consensus       396 ~t~~~~~~lg~QP~~lav~~---------d~~~avv~~~--~~iv~l~~~~~----~~~~~~~--y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  396 YTKSEVVKLGSQPKGLAVLS---------DGGTAVVACI--SDIVLLQDQTK----VSSIPIG--YESSAVAVSPDGSEV  458 (603)
T ss_pred             ccccceeecCCCceeEEEcC---------CCCEEEEEec--CcEEEEecCCc----ceeeccc--cccceEEEcCCCCEE
Confidence            1  11233334677777762         3345666544  34433331111    1223321  267899999987765


Q ss_pred             EEEECCCCeEEEEecCCCC--eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        371 YYAELTSYVIERRKMFGRG--KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       371 y~~d~~~~~I~r~~~~g~~--~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      -+- ...+.+....+.|..  .+.........+.-+|+-+.+..|-.+|. ++.+.+++...
T Consensus       459 aVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd~~s  518 (603)
T KOG0318|consen  459 AVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYDVAS  518 (603)
T ss_pred             EEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEEccc
Confidence            544 345668888887754  33344455677899999988887777776 45566666553

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=94.64  E-value=0.1  Score=39.28  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=33.2

Q ss_pred             eeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        348 AIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       348 ~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      ....+.++..|.||++++..+.||+++...+.|+..+..
T Consensus        46 ~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   46 VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            345566788999999999999999999999999887653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.50  E-value=0.21  Score=31.55  Aligned_cols=42  Identities=17%  Similarity=0.075  Sum_probs=31.0

Q ss_pred             cCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEe
Q psy14258        365 EKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVD  407 (440)
Q Consensus       365 ~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD  407 (440)
                      +.+++||+++...++|..++........-+..+ ..|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence            357899999999999999998654333334443 679999874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1274|consensus

Probab=94.29  E-value=8.9  Score=40.93  Aligned_cols=192  Identities=13%  Similarity=0.089  Sum_probs=110.3

Q ss_pred             eEEEEeCCCCEEEEEeCCCCcEEEEE--ccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        220 YGVTVDFPTKHVYWVDTYLDFIDRIN--YDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       220 ~gl~vD~~~~~ly~~d~~~~~i~~~~--~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      ..|.+|+.+..||.++.. +.|...+  -+-..+.++...  .....+++.+.. .+.+-...+.|.+...-++.+..++
T Consensus        17 t~i~~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~--g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~iL   92 (933)
T KOG1274|consen   17 TLICYDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDIS--GELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEEDTIL   92 (933)
T ss_pred             EEEEEcCCCCEEEEecCC-CceEEeecCCcccCCchhhcc--CceeEEEeeccc-ceEEeeccceEEEeeCCCCCcccee
Confidence            467889899988888753 3344333  222445554421  123466776666 4445556788888888778777788


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCc-eEEEEEcCCCEEEEEECC
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRP-SVIDYHEKEEYIYYAELT  376 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p-~~l~~d~~~~~vy~~d~~  376 (440)
                      ..+.-|.....+.         .++..+.+-+....|..+.++.. .+   ...+.+...| .+|+|||.++.|-+++ .
T Consensus        93 ~Rftlp~r~~~v~---------g~g~~iaagsdD~~vK~~~~~D~-s~---~~~lrgh~apVl~l~~~p~~~fLAvss-~  158 (933)
T KOG1274|consen   93 ARFTLPIRDLAVS---------GSGKMIAAGSDDTAVKLLNLDDS-SQ---EKVLRGHDAPVLQLSYDPKGNFLAVSS-C  158 (933)
T ss_pred             eeeeccceEEEEe---------cCCcEEEeecCceeEEEEecccc-ch---heeecccCCceeeeeEcCCCCEEEEEe-c
Confidence            8887676654442         24445555454567777777666 33   2333344444 4899999888666655 5


Q ss_pred             CCeEEEEecCCCCeEEEE-------ECCCC-CeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        377 SYVIERRKMFGRGKEVVI-------DTGIY-NVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       377 ~~~I~r~~~~g~~~~~~~-------~~~~~-~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .|.++..++........+       ..... ...=+|--+.+|.|-..- ..+.|.+++.+|
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKG  219 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCC
Confidence            778887777632111110       01101 122345555555444432 246777777665

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=94.13  E-value=0.025  Score=31.20  Aligned_cols=16  Identities=31%  Similarity=0.609  Sum_probs=13.9

Q ss_pred             Cceec-CCCCceeeccc
Q psy14258          1 MTFRG-PNKTQCVDADE   16 (440)
Q Consensus         1 ~~~~~-~~~~~C~d~~~   16 (440)
                      .||++ +|+++|+|+||
T Consensus         8 ~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    8 PGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CCCcCCCCCCccccCCC
Confidence            47886 89999999987

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.79  E-value=2.3  Score=41.87  Aligned_cols=136  Identities=13%  Similarity=0.216  Sum_probs=64.6

Q ss_pred             EecCEEEEEecCCCeEE-EEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC-C
Q psy14258        268 VFENNLFVTSWRNQSII-RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT-T  345 (440)
Q Consensus       268 ~~~~~ly~td~~~~~i~-~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~-~  345 (440)
                      .++..|.+=||..+++. .++.  |.+-.      .|..+...|.-..     .-+|.=.|-+  +.|+++--+..+. .
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idL--g~~g~------~pLEvRflH~P~~-----~~gFvg~aLs--s~i~~~~k~~~g~W~  283 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDL--GEEGQ------MPLEVRFLHDPDA-----NYGFVGCALS--SSIWRFYKDDDGEWA  283 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES---TTEE------EEEEEEE-SSTT-------EEEEEEE----EEEEEEEE-ETTEEE
T ss_pred             cccCeEEEEECCCCcEeeEEec--CCCCC------ceEEEEecCCCCc-----cceEEEEecc--ceEEEEEEcCCCCee
Confidence            57788888898877654 3343  11111      2445555552111     1244444433  6777766533321 1


Q ss_pred             ceeeeeecC----------C--------CCceEEEEEcCCCEEEEEECCCCeEEEEecCC-CCeEEEEECCC--------
Q psy14258        346 EQAIMPITD----------L--------KRPSVIDYHEKEEYIYYAELTSYVIERRKMFG-RGKEVVIDTGI--------  398 (440)
Q Consensus       346 ~~~~~~~~~----------~--------~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g-~~~~~~~~~~~--------  398 (440)
                      .+..+.+..          +        .-++.|.+..++++||++....+.|+..++.- .+.+.+.+..+        
T Consensus       284 a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~  363 (461)
T PF05694_consen  284 AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGD  363 (461)
T ss_dssp             EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-
T ss_pred             eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCC
Confidence            111221111          0        12467888889999999999999999999865 33443332111        


Q ss_pred             ----------CCeeeEEEecCCCcEEEEeC
Q psy14258        399 ----------YNVEGMAVDWMANNLYWTDA  418 (440)
Q Consensus       399 ----------~~~~glAvD~~~~~lYwtd~  418 (440)
                                +.|.=|.+-+.+++||||++
T Consensus       364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -TTS------S----EEE-TTSSEEEEE--
T ss_pred             CccccccccCCCCCeEEEccCCeEEEEEee
Confidence                      24677888899999999986

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.69  E-value=8.1  Score=38.39  Aligned_cols=238  Identities=9%  Similarity=0.094  Sum_probs=129.2

Q ss_pred             eeeecCCcEEEe--------ceEEEEecCCceE-EEEEcCCCCCceEEEEcCCCCeEEEEEcCCC--------CCcEEEE
Q psy14258        139 RFPMVTHKIVYP--------EAIYFCTHYMEHC-MIAIDLNLSKPRGIALDPTSGYMFFTKWGAT--------RPMLERS  201 (440)
Q Consensus       139 avD~~~~~lY~~--------~~I~~~~~dg~~~-~~~~~~~~~~P~~iavd~~~g~lywtd~~~~--------~~~I~r~  201 (440)
                      ++.+.++.|-++        ..+.+.+++.... ...+.  .....+++--+.+..+|++.....        ..+|++.
T Consensus       130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            666777777666        3578888865432 21111  112234777776567888876542        2468888


Q ss_pred             eCCCCCce--eEEecC--ccCceEEEEeCCCCEEEEEeCCC---CcEEEEEccCC-----CcEEEecCCccCceeeeeEe
Q psy14258        202 LLDGTERF--PMVTHK--IVYPYGVTVDFPTKHVYWVDTYL---DFIDRINYDGT-----DRKTIRKGFPVQNLYDITVF  269 (440)
Q Consensus       202 ~~dG~~~~--~l~~~~--~~~P~gl~vD~~~~~ly~~d~~~---~~i~~~~~dG~-----~~~~i~~~~~~~~p~gl~~~  269 (440)
                      .+.....+  .++...  ..+-.++.....+..|++.-...   ..++.++++..     ..+.+.... -..-..+...
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~  286 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHH  286 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEE
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEcc
Confidence            88765444  343332  11234677777778877644322   36777887653     344444421 2334456666


Q ss_pred             cCEEEE-Eec--CCCeEEEEeccCCCc---e-EEEecCC--CCeEEEEeccCCCCCCCCCceeEEeecC--CccEEEEEE
Q psy14258        270 ENNLFV-TSW--RNQSIIRVNKFNSDD---Y-ETIANFS--RPFAIHIYHRQKQPDALKPSTFLLYAKG--KPAIIKGLT  338 (440)
Q Consensus       270 ~~~ly~-td~--~~~~i~~~~~~~g~~---~-~~~~~~~--~p~~~~v~~~~~qp~~~~~~~~l~~~~~--~~~~I~~i~  338 (440)
                      ++.+|+ |+.  .+++|.+++......   . .++....  ...++.++           +.+|++...  ...+|..++
T Consensus       287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-----------~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-----------KDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-----------TTEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-----------CCEEEEEEEECCccEEEEEE
Confidence            887776 543  457888888766542   2 2232222  23344444           345554433  346788888


Q ss_pred             cC-CCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC---CCCeEEEEecCCCCeEEE
Q psy14258        339 FK-RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL---TSYVIERRKMFGRGKEVV  393 (440)
Q Consensus       339 ~~-~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~---~~~~I~r~~~~g~~~~~~  393 (440)
                      ++ +.   ....+++.......++..++.++.+++.-.   .-.+|+++++.....+++
T Consensus       356 ~~~~~---~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  356 LDDGK---ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             TT-TE---EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             CCCCc---EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence            87 33   123344444444456666777787777743   246788888886555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.59  E-value=8.7  Score=38.42  Aligned_cols=132  Identities=11%  Similarity=0.050  Sum_probs=71.4

Q ss_pred             eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE
Q psy14258        139 RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV  212 (440)
Q Consensus       139 avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~  212 (440)
                      ++-+.+++|.++      ..|.+.+++++....+.. ....-..=..-|...+|+++......+.|++++++|+..+.+.
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT  322 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT  322 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence            677778888888      479999999988555332 1111112223344456666543333389999999999876555


Q ss_pred             ecCccCceEEEEeCCCCEEEEEeCCCCc--EEEEEcc-CCCcEEEecCCccCceeeeeEecCEE
Q psy14258        213 THKIVYPYGVTVDFPTKHVYWVDTYLDF--IDRINYD-GTDRKTIRKGFPVQNLYDITVFENNL  273 (440)
Q Consensus       213 ~~~~~~P~gl~vD~~~~~ly~~d~~~~~--i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~~~l  273 (440)
                      ... ....--.+.+.+.+|-+.....+.  |...++. |.. ..++.......+-..+..+..+
T Consensus       323 ~~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i  384 (425)
T COG0823         323 FSG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMI  384 (425)
T ss_pred             ccC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceE
Confidence            432 222233455566666666533333  4444332 222 2333322234444455555533

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.52  E-value=5.5  Score=35.87  Aligned_cols=176  Identities=11%  Similarity=0.061  Sum_probs=97.8

Q ss_pred             CCCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE-ecC-C--
Q psy14258        227 PTKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI-ANF-S--  301 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~-~~~-~--  301 (440)
                      .++++|.++ ..+.+..++. +|...........+..+  ..+.++.+|+... .+.|+.++..+|+..-.. ... +  
T Consensus        35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVVDGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEEETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             eCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eeecccccccccc-eeeeEecccCCcceeeeecccccccc
Confidence            488899885 6678999987 56443333222112222  3678889998874 458999998788775442 211 1  


Q ss_pred             ---CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceee--eeecC--CCC--------ceEEEEEcC
Q psy14258        302 ---RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAI--MPITD--LKR--------PSVIDYHEK  366 (440)
Q Consensus       302 ---~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~--~~~~~--~~~--------p~~l~~d~~  366 (440)
                         .+....+.           +..++++.. .+.|+.+++...    ...  .++..  ...        ...+.+  .
T Consensus       111 ~~~~~~~~~~~-----------~~~~~~~~~-~g~l~~~d~~tG----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~  172 (238)
T PF13360_consen  111 GVRSSSSPAVD-----------GDRLYVGTS-SGKLVALDPKTG----KLLWKYPVGEPRGSSPISSFSDINGSPVI--S  172 (238)
T ss_dssp             STB--SEEEEE-----------TTEEEEEET-CSEEEEEETTTT----EEEEEEESSTT-SS--EEEETTEEEEEEC--C
T ss_pred             ccccccCceEe-----------cCEEEEEec-cCcEEEEecCCC----cEEEEeecCCCCCCcceeeecccccceEE--E
Confidence               11122222           244555542 277777776543    111  11111  000        012222  2


Q ss_pred             CCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeee-EEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        367 EEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG-MAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       367 ~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~g-lAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ++.+|+++.... +..++..... ..- ...+..+.+ +..  .++.||.++ ..+.|..+++..
T Consensus       173 ~~~v~~~~~~g~-~~~~d~~tg~-~~w-~~~~~~~~~~~~~--~~~~l~~~~-~~~~l~~~d~~t  231 (238)
T PF13360_consen  173 DGRVYVSSGDGR-VVAVDLATGE-KLW-SKPISGIYSLPSV--DGGTLYVTS-SDGRLYALDLKT  231 (238)
T ss_dssp             TTEEEEECCTSS-EEEEETTTTE-EEE-EECSS-ECECEEC--CCTEEEEEE-TTTEEEEEETTT
T ss_pred             CCEEEEEcCCCe-EEEEECCCCC-EEE-EecCCCccCCcee--eCCEEEEEe-CCCEEEEEECCC
Confidence            568998875443 5555666543 233 333555665 444  488999998 678999999875

...

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.49  E-value=6.5  Score=36.62  Aligned_cols=219  Identities=10%  Similarity=0.105  Sum_probs=118.3

Q ss_pred             cCCcEEEe---ceEEEEecCCceEEEEEc-CCC-CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCcc
Q psy14258        143 VTHKIVYP---EAIYFCTHYMEHCMIAID-LNL-SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV  217 (440)
Q Consensus       143 ~~~~lY~~---~~I~~~~~dg~~~~~~~~-~~~-~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~  217 (440)
                      ..+..|++   .-+...+......-+++. -.+ ..-++..+  -..+.|++|+..   .....++.-....++.. ...
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadldd---gfLivdvsdpssP~lag-rya  168 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDD---GFLIVDVSDPSSPQLAG-RYA  168 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccC---cEEEEECCCCCCceeee-eec
Confidence            45567777   445555555433323322 122 33455555  347899999863   55666665554444432 223


Q ss_pred             Cce----EEEEeCCCCEEEEEeCCCCcEEEEEccCC-CcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258        218 YPY----GVTVDFPTKHVYWVDTYLDFIDRINYDGT-DRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       218 ~P~----gl~vD~~~~~ly~~d~~~~~i~~~~~dG~-~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~  292 (440)
                      .|.    .+++  .+++-|++.... -+..++.... ++..+-.-..-..-+++.+..++.|.++.. ..+..++..+-+
T Consensus       169 ~~~~d~~~v~I--SGn~AYvA~~d~-GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-egvlivd~s~~s  244 (370)
T COG5276         169 LPGGDTHDVAI--SGNYAYVAWRDG-GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-EGVLIVDVSGPS  244 (370)
T ss_pred             cCCCCceeEEE--ecCeEEEEEeCC-CeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-cceEEEecCCCC
Confidence            333    4666  689999997654 4666666543 344433311123668888999999999974 455566665444


Q ss_pred             ceEEEe--cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc-eeeeeecCCCCceEEEEEcCCCE
Q psy14258        293 DYETIA--NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE-QAIMPITDLKRPSVIDYHEKEEY  369 (440)
Q Consensus       293 ~~~~~~--~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~-~~~~~~~~~~~p~~l~~d~~~~~  369 (440)
                      ..+++.  ..+.|.++.-+        ..++.++|+++.. ..+..++......+. ...++..+- +..+|..  -+++
T Consensus       245 sp~~~gsyet~~p~~~s~v--------~Vs~~~~Yvadga-~gl~~idisnp~spfl~ss~~t~g~-~a~gi~a--y~~y  312 (370)
T COG5276         245 SPTVFGSYETSNPVSISTV--------PVSGEYAYVADGA-KGLPIIDISNPPSPFLSSSLDTAGY-QAAGIRA--YGNY  312 (370)
T ss_pred             CceEeeccccCCcccccce--------ecccceeeeeccc-cCceeEeccCCCCCchhccccCCCc-cccceEE--ecCe
Confidence            444443  22245444211        0246889999874 333444443331111 001111111 2334433  4789


Q ss_pred             EEEEECCCCeEEEE
Q psy14258        370 IYYAELTSYVIERR  383 (440)
Q Consensus       370 vy~~d~~~~~I~r~  383 (440)
                      +|++|...+.+.-+
T Consensus       313 ~yiadkn~g~vV~~  326 (370)
T COG5276         313 NYIADKNTGAVVDA  326 (370)
T ss_pred             eEeccCCceEEEeC
Confidence            99999877766544

>KOG0285|consensus

Probab=93.43  E-value=7.4  Score=37.09  Aligned_cols=276  Identities=10%  Similarity=0.043  Sum_probs=147.4

Q ss_pred             eeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~  203 (440)
                      +...++=.+. |||+.+ .+|.+    ..|..-++.......-+.+-....++++|.+.+-|||-+-.+   ..|...++
T Consensus       147 i~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged---k~VKCwDL  222 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED---KQVKCWDL  222 (460)
T ss_pred             hhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC---CeeEEEec
Confidence            3455666888 999874 47777    568888998777665556567889999999999999987655   47888887


Q ss_pred             CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCcee-eeeEe--cCEEEEEecCC
Q psy14258        204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLY-DITVF--ENNLFVTSWRN  280 (440)
Q Consensus       204 dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~-gl~~~--~~~ly~td~~~  280 (440)
                      .-...-.-...-+.....|++.|.-+.|+ +-.....+..-|+.......++.+  -..|. .+...  +..||-. ...
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~-t~grDst~RvWDiRtr~~V~~l~G--H~~~V~~V~~~~~dpqvit~-S~D  298 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLV-TGGRDSTIRVWDIRTRASVHVLSG--HTNPVASVMCQPTDPQVITG-SHD  298 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEE-ecCCcceEEEeeecccceEEEecC--CCCcceeEEeecCCCceEEe-cCC
Confidence            43211111122344566778875555544 444445555555554433333333  12232 22221  2344433 345


Q ss_pred             CeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCC-CCc
Q psy14258        281 QSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL-KRP  358 (440)
Q Consensus       281 ~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~-~~p  358 (440)
                      ..|.--+...|+...++..-. ....+ ..|         |+.++|.+.+ ...|....+...    .....+.+. ...
T Consensus       299 ~tvrlWDl~agkt~~tlt~hkksvral-~lh---------P~e~~fASas-~dnik~w~~p~g----~f~~nlsgh~~ii  363 (460)
T KOG0285|consen  299 STVRLWDLRAGKTMITLTHHKKSVRAL-CLH---------PKENLFASAS-PDNIKQWKLPEG----EFLQNLSGHNAII  363 (460)
T ss_pred             ceEEEeeeccCceeEeeecccceeeEE-ecC---------CchhhhhccC-CccceeccCCcc----chhhcccccccee
Confidence            666666776777665443222 12222 222         4555555433 345554444322    001111110 012


Q ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEecCC-CCe---EEEEECCC----CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        359 SVIDYHEKEEYIYYAELTSYVIERRKMFG-RGK---EVVIDTGI----YNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       359 ~~l~~d~~~~~vy~~d~~~~~I~r~~~~g-~~~---~~~~~~~~----~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ..++.+  .+-+|++-...+.|.--+... -+.   ++++..|-    .+.....+|-.+-+|--.. ...+|++..-|-
T Consensus       364 ntl~~n--sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e-adKtIk~~keDe  440 (460)
T KOG0285|consen  364 NTLSVN--SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE-ADKTIKMYKEDE  440 (460)
T ss_pred             eeeeec--cCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc-CCcceEEEeccc
Confidence            234443  344777776677777666643 221   22333221    2345667885554554444 455788877654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=93.31  E-value=8.7  Score=37.59  Aligned_cols=100  Identities=8%  Similarity=0.033  Sum_probs=52.1

Q ss_pred             eEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc
Q psy14258        267 TVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE  346 (440)
Q Consensus       267 ~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~  346 (440)
                      .+.++.+|.+.. .+.++.++..+|+..-... ........+           .++.+|+... .+.++.++.+.....-
T Consensus       238 ~~~~~~vy~~~~-~g~l~a~d~~tG~~~W~~~-~~~~~~p~~-----------~~~~vyv~~~-~G~l~~~d~~tG~~~W  303 (377)
T TIGR03300       238 VVDGGQVYAVSY-QGRVAALDLRSGRVLWKRD-ASSYQGPAV-----------DDNRLYVTDA-DGVVVALDRRSGSELW  303 (377)
T ss_pred             EEECCEEEEEEc-CCEEEEEECCCCcEEEeec-cCCccCceE-----------eCCEEEEECC-CCeEEEEECCCCcEEE
Confidence            456789999876 5788899987775432111 111111111           2466776654 3778888875431100


Q ss_pred             ee-eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        347 QA-IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       347 ~~-~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      .. ...-.....|.   +  .++.||..+ ..+.|+.++.+
T Consensus       304 ~~~~~~~~~~ssp~---i--~g~~l~~~~-~~G~l~~~d~~  338 (377)
T TIGR03300       304 KNDELKYRQLTAPA---V--VGGYLVVGD-FEGYLHWLSRE  338 (377)
T ss_pred             ccccccCCccccCE---E--ECCEEEEEe-CCCEEEEEECC
Confidence            00 00000111221   2  256788776 46678887775

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0285|consensus

Probab=93.13  E-value=8.2  Score=36.78  Aligned_cols=239  Identities=15%  Similarity=0.180  Sum_probs=127.7

Q ss_pred             EEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258        166 AIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN  245 (440)
Q Consensus       166 ~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~  245 (440)
                      ++...++..+.++|||.  .=|++....+ ..|...++.....+.-+..-+....|+++....-.||-+- ....|..-|
T Consensus       146 Vi~gHlgWVr~vavdP~--n~wf~tgs~D-rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwD  221 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPG--NEWFATGSAD-RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWD  221 (460)
T ss_pred             hhhhccceEEEEeeCCC--ceeEEecCCC-ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEe
Confidence            34557889999999995  3344443333 5777778765444333333456678999986666666552 344566666


Q ss_pred             ccCCCcEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCcee
Q psy14258        246 YDGTDRKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       246 ~dG~~~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      +.-.  ++|.. ...+...+.++++.- .+.+|-...-.+..-+..+-..+.++.+-..|..-.+.    ||.    ++ 
T Consensus       222 Le~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~----~~~----dp-  290 (460)
T KOG0285|consen  222 LEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC----QPT----DP-  290 (460)
T ss_pred             chhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe----ecC----CC-
Confidence            5432  33322 113666778888743 55566554444444465555555555543333332222    110    11 


Q ss_pred             EEeecCCccEEEEEEcCCCCCCceeeeee-cCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC-CCCeEEEEECCCCCe
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF-GRGKEVVIDTGIYNV  401 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~-g~~~~~~~~~~~~~~  401 (440)
                      -+++-+..+.|+..++...    .....+ ..-...++++.+|.+. + +++...+.|..-++- |.-..- ++..-...
T Consensus       291 qvit~S~D~tvrlWDl~ag----kt~~tlt~hkksvral~lhP~e~-~-fASas~dnik~w~~p~g~f~~n-lsgh~~ii  363 (460)
T KOG0285|consen  291 QVITGSHDSTVRLWDLRAG----KTMITLTHHKKSVRALCLHPKEN-L-FASASPDNIKQWKLPEGEFLQN-LSGHNAII  363 (460)
T ss_pred             ceEEecCCceEEEeeeccC----ceeEeeecccceeeEEecCCchh-h-hhccCCccceeccCCccchhhc-ccccccee
Confidence            1233333456666665433    122222 2233566888888654 3 455566677766653 321111 11111234


Q ss_pred             eeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        402 EGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       402 ~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      ..|++.  +..+|++-..++.|.--+.
T Consensus       364 ntl~~n--sD~v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  364 NTLSVN--SDGVLVSGGDNGSIMFWDW  388 (460)
T ss_pred             eeeeec--cCceEEEcCCceEEEEEec
Confidence            556665  5567777777776665553

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.04  E-value=7.2  Score=35.89  Aligned_cols=190  Identities=13%  Similarity=0.065  Sum_probs=98.7

Q ss_pred             CCeEEEEEcCCCCCcEEEEeC------CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcE-EE-
Q psy14258        183 SGYMFFTKWGATRPMLERSLL------DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK-TI-  254 (440)
Q Consensus       183 ~g~lywtd~~~~~~~I~r~~~------dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~-~i-  254 (440)
                      ..++||++.... ..+.....      .+...+...-.-...-.|..+  -++-||+--.....|.+.++...... .. 
T Consensus        30 ~~~iy~~~~~~~-~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vV--YngslYY~~~~s~~IvkydL~t~~v~~~~~  106 (250)
T PF02191_consen   30 SEKIYVTSGFSG-NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVV--YNGSLYYNKYNSRNIVKYDLTTRSVVARRE  106 (250)
T ss_pred             CCCEEEECccCC-CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEE--ECCcEEEEecCCceEEEEECcCCcEEEEEE
Confidence            568999887654 34444321      222222221111223346666  58899998888899999999876655 22 


Q ss_pred             ecCCccC--ce--------eeeeEecCE---EEEEecCCCe--EEEEeccCCCceEEEe-cCCCCeEEEEeccCCCCCCC
Q psy14258        255 RKGFPVQ--NL--------YDITVFENN---LFVTSWRNQS--IIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDAL  318 (440)
Q Consensus       255 ~~~~~~~--~p--------~gl~~~~~~---ly~td~~~~~--i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~~  318 (440)
                      +.+....  .|        ..+|++|.-   ||-+....+.  |.++|..+-...++.. ...++..-..|         
T Consensus       107 L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naF---------  177 (250)
T PF02191_consen  107 LPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAF---------  177 (250)
T ss_pred             CCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhccee---------
Confidence            1111111  22        467888873   3444433332  3344443333222221 12211100000         


Q ss_pred             CCceeEEeecCCc---cEE-EEEEcCCCCCCceeeeeecCC-CCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        319 KPSTFLLYAKGKP---AII-KGLTFKRDGTTEQAIMPITDL-KRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       319 ~~~~~l~~~~~~~---~~I-~~i~~~~~~~~~~~~~~~~~~-~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                      -.-+.||..++..   .+| ...++... ....+.+++... .....|.|+|.+++||.=|.+...+|.+.+
T Consensus       178 mvCGvLY~~~s~~~~~~~I~yafDt~t~-~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v~f  248 (250)
T PF02191_consen  178 MVCGVLYATDSYDTRDTEIFYAFDTYTG-KEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGYQVTYDVRF  248 (250)
T ss_pred             eEeeEEEEEEECCCCCcEEEEEEECCCC-ceeceeeeeccccCceEeeeECCCCCeEEEEECCeEEEEEEEe
Confidence            0136677666542   233 23333322 223344555432 345689999999999999987766766654

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PTZ00421 coronin; Provisional

Probab=92.98  E-value=12  Score=38.27  Aligned_cols=207  Identities=7%  Similarity=0.013  Sum_probs=109.3

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc-------eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEE
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER-------FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFID  242 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~-------~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~  242 (440)
                      ......+++.+|.++.++.+-...  +.|...++.....       ...+...-.....+++.+..+.++.+-...+.|.
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS~D--gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr  151 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTASED--GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN  151 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCC--CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence            345678999999655544443332  4677666643211       1111222234667888876655666555667787


Q ss_pred             EEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCe-EEEEeccCCCCCCCCC
Q psy14258        243 RINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF-AIHIYHRQKQPDALKP  320 (440)
Q Consensus       243 ~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~-~~~v~~~~~qp~~~~~  320 (440)
                      .-++..........+ ......++++..+ .+..+-..++.|...+..+++....+..-..+. ...++.+        .
T Consensus       152 IWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~--------~  222 (493)
T PTZ00421        152 VWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK--------R  222 (493)
T ss_pred             EEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC--------C
Confidence            777754333222222 1233567777644 566666667888888877776544332211111 1112211        1


Q ss_pred             ceeEEee---cCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        321 STFLLYA---KGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       321 ~~~l~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                      ...++.+   ....+.|...++... ...-....+..........||+.++.+|.+..+.+.|+..++...
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~-~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKM-ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCC-CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            1223221   112356777776543 111011111111122245688888888888777888988888753

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=92.89  E-value=0.087  Score=32.70  Aligned_cols=30  Identities=40%  Similarity=0.775  Sum_probs=24.3

Q ss_pred             ecccCCCCCCCCC--CcccCCCceEEc-cCCee
Q psy14258         13 DADECLIDGSCDQ--TCTNTHLSYTYT-DEGFS   42 (440)
Q Consensus        13 d~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~   42 (440)
                      |+++|.....|.+  .|.+..++|.|. +.+|.
T Consensus         1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~   33 (39)
T smart00179        1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT   33 (39)
T ss_pred             CcccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence            4677875456877  899999999999 98886

>KOG0276|consensus

Probab=92.87  E-value=13  Score=38.23  Aligned_cols=98  Identities=10%  Similarity=0.017  Sum_probs=62.3

Q ss_pred             CcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-ccCc
Q psy14258        145 HKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-IVYP  219 (440)
Q Consensus       145 ~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-~~~P  219 (440)
                      .++.++    .+|.+++.+.......+...-+..+.|++.|..=++ .|....  -.|...+-++.-...-.-++ -.+.
T Consensus        67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v-LtsSDD--m~iKlW~we~~wa~~qtfeGH~HyV  143 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV-LTSSDD--MTIKLWDWENEWACEQTFEGHEHYV  143 (794)
T ss_pred             cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeE-EecCCc--cEEEEeeccCceeeeeEEcCcceEE
Confidence            345555    689999998766666666566889999999964433 333232  47777777776655443333 3456


Q ss_pred             eEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258        220 YGVTVDFPTKHVYWVDTYLDFIDRIN  245 (440)
Q Consensus       220 ~gl~vD~~~~~ly~~d~~~~~i~~~~  245 (440)
                      ..+++.|....-|.+-.-..+|..=+
T Consensus       144 Mqv~fnPkD~ntFaS~sLDrTVKVWs  169 (794)
T KOG0276|consen  144 MQVAFNPKDPNTFASASLDRTVKVWS  169 (794)
T ss_pred             EEEEecCCCccceeeeeccccEEEEE
Confidence            77888877766666554444443333

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.05  E-value=1.1  Score=43.05  Aligned_cols=60  Identities=18%  Similarity=0.152  Sum_probs=46.6

Q ss_pred             CceEEEEEcCCCEEEEEECCC------CeEEEEecCCCCeEEE-EECC-------------CCCeeeEEEecCCCcEEEE
Q psy14258        357 RPSVIDYHEKEEYIYYAELTS------YVIERRKMFGRGKEVV-IDTG-------------IYNVEGMAVDWMANNLYWT  416 (440)
Q Consensus       357 ~p~~l~~d~~~~~vy~~d~~~------~~I~r~~~~g~~~~~~-~~~~-------------~~~~~glAvD~~~~~lYwt  416 (440)
                      .+.+|++ +.++.+||++...      ..|++++.+|...+.+ +...             -.+.||||+.+.++.||.+
T Consensus        86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            5668999 5678899999999      9999999998764443 2221             2468999999988878887


Q ss_pred             e
Q psy14258        417 D  417 (440)
Q Consensus       417 d  417 (440)
                      -
T Consensus       165 ~  165 (326)
T PF13449_consen  165 M  165 (326)
T ss_pred             E
Confidence            3

>KOG4260|consensus

Probab=91.81  E-value=0.08  Score=47.71  Aligned_cols=39  Identities=33%  Similarity=0.683  Sum_probs=31.4

Q ss_pred             CCCceeecccCCCC-CCCC--CCcccCCCceEEc-cCCeeeec
Q psy14258          7 NKTQCVDADECLID-GSCD--QTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         7 ~~~~C~d~~~C~~~-~~Cs--~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      |..-|+|+|||... ..|+  |+|.|+.|+|+|. .+||....
T Consensus       229 de~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~  271 (350)
T KOG4260|consen  229 DEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGV  271 (350)
T ss_pred             cccccccHHHHhcCCCCCChhheeecCCCceEecccccccCCh
Confidence            45679999999953 4443  5999999999999 99998744

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.32  E-value=0.84  Score=28.65  Aligned_cols=39  Identities=18%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEE
Q psy14258        270 ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHI  308 (440)
Q Consensus       270 ~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v  308 (440)
                      +++||++++..+.|..++..+++....+.....|.++.+
T Consensus         3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            568999999999999999876666555554456777754

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=91.28  E-value=0.8  Score=47.01  Aligned_cols=65  Identities=23%  Similarity=0.299  Sum_probs=47.8

Q ss_pred             CCCCceEEEEEcCCCEEEEEECCC-------------------CeEEEEecCCC-------CeEEEEEC-----------
Q psy14258        354 DLKRPSVIDYHEKEEYIYYAELTS-------------------YVIERRKMFGR-------GKEVVIDT-----------  396 (440)
Q Consensus       354 ~~~~p~~l~~d~~~~~vy~~d~~~-------------------~~I~r~~~~g~-------~~~~~~~~-----------  396 (440)
                      .+.+|.++++++.++.||++-+..                   +.|+|....+.       .-+.++..           
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            466899999999999999996443                   38999998764       22333332           


Q ss_pred             ------CCCCeeeEEEecCCCcEEEEeCC
Q psy14258        397 ------GIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       397 ------~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                            .+.+|++|+||.. ++||+...+
T Consensus       428 ~~~~~~~f~sPDNL~~d~~-G~LwI~eD~  455 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPD-GNLWIQEDG  455 (524)
T ss_pred             CcccCCCcCCCCceEECCC-CCEEEEeCC
Confidence                  3568999999984 568887544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.27  E-value=17  Score=37.54  Aligned_cols=48  Identities=13%  Similarity=-0.139  Sum_probs=28.9

Q ss_pred             EEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe
Q psy14258         85 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP  150 (440)
Q Consensus        85 ~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~  150 (440)
                      .+.||+..+.|||.-.+..-     ..+..          +   ....+..-.= |+|..++++-|.
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p-----~~~~~----------r---~gdnl~~~s~vAld~~TG~~~W~  286 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSP-----WNSHL----------R---PGDNLYTSSIVARDPDTGKIKWH  286 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCC-----CCCCC----------C---CCCCccceeEEEEccccCCEEEe
Confidence            45899999999998765321     11111          0   0012222223 999999999998

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=91.17  E-value=17  Score=35.95  Aligned_cols=136  Identities=7%  Similarity=0.018  Sum_probs=69.2

Q ss_pred             eEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc
Q psy14258        267 TVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE  346 (440)
Q Consensus       267 ~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~  346 (440)
                      .+.++.||+... .+.++.++..+|+..=.. ....+..+.+           .++.+|+... .+.++.++.... .  
T Consensus       253 ~v~~~~vy~~~~-~g~l~ald~~tG~~~W~~-~~~~~~~~~~-----------~~~~vy~~~~-~g~l~ald~~tG-~--  315 (394)
T PRK11138        253 VVVGGVVYALAY-NGNLVALDLRSGQIVWKR-EYGSVNDFAV-----------DGGRIYLVDQ-NDRVYALDTRGG-V--  315 (394)
T ss_pred             EEECCEEEEEEc-CCeEEEEECCCCCEEEee-cCCCccCcEE-----------ECCEEEEEcC-CCeEEEEECCCC-c--
Confidence            356889999875 578999998888643111 1111111111           1356666654 377877776543 1  


Q ss_pred             eee-ee-ec--CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC-eEEEEECCCCCeeeEEEecCCCcEEEEeCCCC
Q psy14258        347 QAI-MP-IT--DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG  421 (440)
Q Consensus       347 ~~~-~~-~~--~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~-~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~  421 (440)
                      ... .+ ..  ....|.   +  .+++||+.+. .+.|+.++.+... ....-..+-......++.  +++||+.+. .+
T Consensus       316 ~~W~~~~~~~~~~~sp~---v--~~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~-~G  386 (394)
T PRK11138        316 ELWSQSDLLHRLLTAPV---L--YNGYLVVGDS-EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQAR-DG  386 (394)
T ss_pred             EEEcccccCCCcccCCE---E--ECCEEEEEeC-CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeC-Cc
Confidence            111 00 00  111222   1  2578888874 5678888775322 111100111112223343  668998854 55


Q ss_pred             eEEEEEe
Q psy14258        422 TINVAKI  428 (440)
Q Consensus       422 ~I~~~~~  428 (440)
                      .|..+++
T Consensus       387 ~l~~~~~  393 (394)
T PRK11138        387 TVYAITR  393 (394)
T ss_pred             eEEEEeC
Confidence            6766654

>KOG0318|consensus

Probab=91.06  E-value=18  Score=36.26  Aligned_cols=254  Identities=9%  Similarity=0.062  Sum_probs=133.3

Q ss_pred             ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE-ecCccCceEEEEeCCCC
Q psy14258        151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV-THKIVYPYGVTVDFPTK  229 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~-~~~~~~P~gl~vD~~~~  229 (440)
                      +.|.-.+++-.....++........++++.|.+.+||=.+..   +.|..-+..-...-.+. ...-....+|+.+ ..+
T Consensus       300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD---G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~  375 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD---GHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESG  375 (603)
T ss_pred             cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC---ceEEEEecCCccccccccccccceEEEEeec-CCC
Confidence            455555544333334445566788999999988888877766   46766655322222222 1123346678875 446


Q ss_pred             EEEEEeCCCCcEEEEEccCCCcE--EEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCeE
Q psy14258        230 HVYWVDTYLDFIDRINYDGTDRK--TIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFA  305 (440)
Q Consensus       230 ~ly~~d~~~~~i~~~~~dG~~~~--~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~  305 (440)
                      .||-+- ..+.+.++++.+....  .+..  .-.+|.|+++..+  .+.++-- .+ |..+.-  .+....+.-...|..
T Consensus       376 ~~~t~g-~Dd~l~~~~~~~~~~t~~~~~~--lg~QP~~lav~~d~~~avv~~~-~~-iv~l~~--~~~~~~~~~~y~~s~  448 (603)
T KOG0318|consen  376 ELFTIG-WDDTLRVISLKDNGYTKSEVVK--LGSQPKGLAVLSDGGTAVVACI-SD-IVLLQD--QTKVSSIPIGYESSA  448 (603)
T ss_pred             cEEEEe-cCCeEEEEecccCcccccceee--cCCCceeEEEcCCCCEEEEEec-Cc-EEEEec--CCcceeeccccccce
Confidence            666554 4678888877443322  1111  1357999999876  4444432 22 222221  111111111113444


Q ss_pred             EEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEe
Q psy14258        306 IHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRK  384 (440)
Q Consensus       306 ~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~  384 (440)
                      +++.          |+ .+..+. +..++++...+.+.... +....+.....++.|+|.|++.++-.+|. .+.+.-.+
T Consensus       449 vAv~----------~~~~~vaVG-G~Dgkvhvysl~g~~l~-ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd  515 (603)
T KOG0318|consen  449 VAVS----------PDGSEVAVG-GQDGKVHVYSLSGDELK-EEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYD  515 (603)
T ss_pred             EEEc----------CCCCEEEEe-cccceEEEEEecCCccc-ceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEE
Confidence            4443          23 333343 23477888888887332 33344455567889999998887777774 44454555


Q ss_pred             cCCCCeEEEEEC--CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        385 MFGRGKEVVIDT--GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       385 ~~g~~~~~~~~~--~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ...... ....-  .-..+..||--+.+. +.-|-+-...|.+.+++-
T Consensus       516 ~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  516 VASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             cccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccC
Confidence            543211 11111  112345555443222 333334445677777665

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=90.92  E-value=19  Score=36.09  Aligned_cols=134  Identities=10%  Similarity=0.025  Sum_probs=72.8

Q ss_pred             eeeecCCcEEEe--------ceEEEEecCCceEEEEEcCC-C-CCceEEEEcCCCCeEEEEEcCCCC-CcEEEEeCCCCC
Q psy14258        139 RFPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDLN-L-SKPRGIALDPTSGYMFFTKWGATR-PMLERSLLDGTE  207 (440)
Q Consensus       139 avD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~-~-~~P~~iavd~~~g~lywtd~~~~~-~~I~r~~~dG~~  207 (440)
                      .-.+.++.+|++        ..+...+.||.....+.... + ..|.-   -|....+.+....... ++|+..+++...
T Consensus       153 ~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~w---s~~~~~~~y~~f~~~~~~~i~~~~l~~g~  229 (425)
T COG0823         153 KGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPAW---SPDGKKLAYVSFELGGCPRIYYLDLNTGK  229 (425)
T ss_pred             cceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceecccc---CcCCCceEEEEEecCCCceEEEEeccCCc
Confidence            444556666655        46777788887766554321 1 11211   1222333333333322 579999999888


Q ss_pred             ceeEEecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEE
Q psy14258        208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVT  276 (440)
Q Consensus       208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~t  276 (440)
                      +..++.... .-...++-+.+.+|.++-...+  .|+.++++++....+.........-.+.-++.+|+++
T Consensus       230 ~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~  299 (425)
T COG0823         230 RPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFT  299 (425)
T ss_pred             cceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEE
Confidence            887776321 1123345556778877765544  7888888887755544322122222233445555544

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=90.86  E-value=2.7  Score=43.22  Aligned_cols=62  Identities=13%  Similarity=0.235  Sum_probs=45.5

Q ss_pred             ccccccce-eeeecCCcEEEe----c-------------------eEEEEecCCc-------eEEE-EEc----------
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP----E-------------------AIYFCTHYME-------HCMI-AID----------  168 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~----~-------------------~I~~~~~dg~-------~~~~-~~~----------  168 (440)
                      ..+..|++ ++++.++.+|++    .                   +|.+...++.       .-.. +..          
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            45889999 999999999999    3                   6788777654       2222 221          


Q ss_pred             ------CCCCCceEEEEcCCCCeEEEEEcCC
Q psy14258        169 ------LNLSKPRGIALDPTSGYMFFTKWGA  193 (440)
Q Consensus       169 ------~~~~~P~~iavd~~~g~lywtd~~~  193 (440)
                            ..+..|-.|++|+ .|.|++.+-..
T Consensus       427 ~~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~  456 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDP-DGNLWIQEDGG  456 (524)
T ss_pred             cCcccCCCcCCCCceEECC-CCCEEEEeCCC
Confidence                  1367899999999 68888876544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.49  E-value=19  Score=35.51  Aligned_cols=61  Identities=10%  Similarity=0.095  Sum_probs=41.3

Q ss_pred             CCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCc
Q psy14258        228 TKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD  293 (440)
Q Consensus       228 ~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~  293 (440)
                      +++||++.. .+.+..++........-..   +..+..+++.++.||+.+. ++.++.++..+|+.
T Consensus       256 ~~~vy~~~~-~g~l~ald~~tG~~~W~~~---~~~~~~~~~~~~~vy~~~~-~g~l~ald~~tG~~  316 (394)
T PRK11138        256 GGVVYALAY-NGNLVALDLRSGQIVWKRE---YGSVNDFAVDGGRIYLVDQ-NDRVYALDTRGGVE  316 (394)
T ss_pred             CCEEEEEEc-CCeEEEEECCCCCEEEeec---CCCccCcEEECCEEEEEcC-CCeEEEEECCCCcE
Confidence            678888764 4678888874333222111   3334456788999999875 68899999887754

>KOG0268|consensus

Probab=90.20  E-value=13  Score=35.55  Aligned_cols=234  Identities=9%  Similarity=0.116  Sum_probs=111.3

Q ss_pred             eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCC-CE
Q psy14258        152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT-KH  230 (440)
Q Consensus       152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~-~~  230 (440)
                      .|..-++....+...+....+-.+||+++- +..++..|.    -.|.+..++|....++......    +-||... +.
T Consensus        90 ~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdD----KtvK~wk~~~~p~~tilg~s~~----~gIdh~~~~~  160 (433)
T KOG0268|consen   90 EVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDD----KTVKQWKIDGPPLHTILGKSVY----LGIDHHRKNS  160 (433)
T ss_pred             eEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCC----cceeeeeccCCcceeeeccccc----cccccccccc
Confidence            344445555444433333445688999987 455555543    3677788888655555433211    1222211 22


Q ss_pred             EEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEE
Q psy14258        231 VYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIH  307 (440)
Q Consensus       231 ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~  307 (440)
                      +|-+ . ...|..-+..-.++..-++ +  ......+.+.  +-.|.-+-...++|...+...++...-+.-.-++.+|.
T Consensus       161 ~FaT-c-Ge~i~IWD~~R~~Pv~smswG--~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is  236 (433)
T KOG0268|consen  161 VFAT-C-GEQIDIWDEQRDNPVSSMSWG--ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC  236 (433)
T ss_pred             cccc-c-CceeeecccccCCccceeecC--CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence            2211 1 1112222211111111000 1  1111122211  12344444445555555655555444221111233332


Q ss_pred             EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        308 IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       308 v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      .          +|+.|.|++-.....++..++-.-..+  ..+-.........+||.|- |+=|++-....+|+-+..+.
T Consensus       237 w----------nPeafnF~~a~ED~nlY~~DmR~l~~p--~~v~~dhvsAV~dVdfspt-G~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  237 W----------NPEAFNFVAANEDHNLYTYDMRNLSRP--LNVHKDHVSAVMDVDFSPT-GQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             c----------Cccccceeeccccccceehhhhhhccc--chhhcccceeEEEeccCCC-cchhccccccceEEEeecCC
Confidence            2          356677776665567766665433010  1111112223457888885 55778888899999999875


Q ss_pred             C-CeEEEEECCCCCeeeEEEecCCC
Q psy14258        388 R-GKEVVIDTGIYNVEGMAVDWMAN  411 (440)
Q Consensus       388 ~-~~~~~~~~~~~~~~glAvD~~~~  411 (440)
                      . .+++--...++.+.++..--.++
T Consensus       304 ~~SRdiYhtkRMq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  304 GHSRDIYHTKRMQHVFCVKYSMDSK  328 (433)
T ss_pred             CcchhhhhHhhhheeeEEEEecccc
Confidence            4 45544445566777776654444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=90.03  E-value=14  Score=33.17  Aligned_cols=104  Identities=13%  Similarity=0.015  Sum_probs=65.0

Q ss_pred             CCeEEEEEcCCCCCcEEEEeC-CCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcEEEEE-ccCCCcEEEec-C-
Q psy14258        183 SGYMFFTKWGATRPMLERSLL-DGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN-YDGTDRKTIRK-G-  257 (440)
Q Consensus       183 ~g~lywtd~~~~~~~I~r~~~-dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~-~dG~~~~~i~~-~-  257 (440)
                      .+++|.++..   +.|...+. +|...-..-. ..+..+  ..+  .++++|+... .+.+..++ .+|........ . 
T Consensus        36 ~~~v~~~~~~---~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~  107 (238)
T PF13360_consen   36 GGRVYVASGD---GNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSS  107 (238)
T ss_dssp             TTEEEEEETT---SEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SS
T ss_pred             CCEEEEEcCC---CEEEEEECCCCCEEEEeeccccccce--eee--cccccccccc-eeeeEecccCCcceeeeeccccc
Confidence            5888888644   57888886 6643322221 122232  244  4889998873 34899998 46665555322 1 


Q ss_pred             C--ccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceE
Q psy14258        258 F--PVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       258 ~--~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      .  .+..+...++.++.+|.... ++.|+.++..+|+..-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen  108 PPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLW  146 (238)
T ss_dssp             CTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEE
T ss_pred             cccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEE
Confidence            1  12345566777888988875 7889999988887754

...

>smart00284 OLF Olfactomedin-like domains

Probab=90.01  E-value=15  Score=33.71  Aligned_cols=151  Identities=15%  Similarity=0.143  Sum_probs=80.5

Q ss_pred             ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcE--EEecCC--ccCce--------eeeeEecC---EEEEEecCCCeE
Q psy14258        219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK--TIRKGF--PVQNL--------YDITVFEN---NLFVTSWRNQSI  283 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~--~i~~~~--~~~~p--------~gl~~~~~---~ly~td~~~~~i  283 (440)
                      -.|..+  -++-||+--..+..|.+.++......  .++.+.  .-..|        ..+|++|+   -||-|....+.|
T Consensus        76 GtG~VV--YngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i  153 (255)
T smart00284       76 GTGVVV--YNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI  153 (255)
T ss_pred             cccEEE--ECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence            345666  57899998888889999998776553  222210  11122        46888887   344454444444


Q ss_pred             E--EEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCC-----ceeEEeecC---CccEEE-EEEcCCCCCCceeeeee
Q psy14258        284 I--RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKP-----STFLLYAKG---KPAIIK-GLTFKRDGTTEQAIMPI  352 (440)
Q Consensus       284 ~--~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~-----~~~l~~~~~---~~~~I~-~i~~~~~~~~~~~~~~~  352 (440)
                      .  ++|..+-...++..             ..+|...+.     -+.|+++++   ...+|. ..+..+. ......+|+
T Consensus       154 vvSkLnp~tL~ve~tW~-------------T~~~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~-~~~~~~i~f  219 (255)
T smart00284      154 VISKLNPATLTIENTWI-------------TTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTG-KEGHLDIPF  219 (255)
T ss_pred             EEEeeCcccceEEEEEE-------------cCCCcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCC-ccceeeeee
Confidence            3  44433222222221             112211111     266777764   223442 3333333 222344555


Q ss_pred             cCCC-CceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        353 TDLK-RPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       353 ~~~~-~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                      ...- .-..|+|+|.+++||.=|.+-..+|.+.+
T Consensus       220 ~n~y~~~s~l~YNP~d~~LY~wdng~~l~Y~v~f  253 (255)
T smart00284      220 ENMYEYISMLDYNPNDRKLYAWNNGHLVHYDIAL  253 (255)
T ss_pred             ccccccceeceeCCCCCeEEEEeCCeEEEEEEEe
Confidence            5422 34479999999999999876655555543

>KOG0268|consensus

Probab=90.01  E-value=5.9  Score=37.76  Aligned_cols=212  Identities=13%  Similarity=0.066  Sum_probs=105.4

Q ss_pred             CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec-CEEE
Q psy14258        196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE-NNLF  274 (440)
Q Consensus       196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~-~~ly  274 (440)
                      +.|.-.+|.-..-...+....+...||.++ .+..++..|..+=+.+.  ++|...++++..   ..-.||.-.. +.+|
T Consensus        89 G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~-~~~~~tvgdDKtvK~wk--~~~~p~~tilg~---s~~~gIdh~~~~~~F  162 (433)
T KOG0268|consen   89 GEVKIWNLSQRECIRTFKAHEGLVRGICVT-QTSFFTVGDDKTVKQWK--IDGPPLHTILGK---SVYLGIDHHRKNSVF  162 (433)
T ss_pred             ceEEEEehhhhhhhheeecccCceeeEEec-ccceEEecCCcceeeee--ccCCcceeeecc---ccccccccccccccc
Confidence            456666664433333333334567899999 47788877765444444  455555555432   1223444322 2444


Q ss_pred             EEecCCCeEEEEeccCCCceEEEe-cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec
Q psy14258        275 VTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT  353 (440)
Q Consensus       275 ~td~~~~~i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~  353 (440)
                      .|-...-.||-..+.+  +...+. +......+...     |    .+.+++.+....+.|...++-.. .+   ..-+.
T Consensus       163 aTcGe~i~IWD~~R~~--Pv~smswG~Dti~svkfN-----p----vETsILas~~sDrsIvLyD~R~~-~P---l~KVi  227 (433)
T KOG0268|consen  163 ATCGEQIDIWDEQRDN--PVSSMSWGADSISSVKFN-----P----VETSILASCASDRSIVLYDLRQA-SP---LKKVI  227 (433)
T ss_pred             cccCceeeecccccCC--ccceeecCCCceeEEecC-----C----CcchheeeeccCCceEEEecccC-Cc---cceee
Confidence            4433222333222211  111000 00000111111     0    12333333333355555554333 11   11111


Q ss_pred             CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        354 DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID-TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       354 ~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      --.++.+|.++| +.+.|++-.....+|-.++.--.+.+-+. ...+.+-.+++.+.| .=+++-+-..+|.++..+.
T Consensus       228 ~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  228 LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCC
Confidence            123688999999 89999998899999999886422222111 222345556666544 3556666667888888776

>KOG1446|consensus

Probab=89.51  E-value=18  Score=33.79  Aligned_cols=197  Identities=9%  Similarity=0.023  Sum_probs=101.2

Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCc
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDD  293 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~  293 (440)
                      -..++.|.++..+..|.. -...+.+...+. +|...+++.......+-.-.+-... -+|-+...+..|.-.+..+.+-
T Consensus        14 ~~~i~sl~fs~~G~~lit-ss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLIT-SSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCceeEEEecCCCCEEEE-ecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            456788888855555554 455667777774 6777777765211101000011111 2333333344555555544433


Q ss_pred             eEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEE
Q psy14258        294 YETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYY  372 (440)
Q Consensus       294 ~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~  372 (440)
                      ...+.+=. ....|.+.          |.+-.+++.+....|+..++... .. ...+   .+..+...||||. |-++-
T Consensus        93 lRYF~GH~~~V~sL~~s----------P~~d~FlS~S~D~tvrLWDlR~~-~c-qg~l---~~~~~pi~AfDp~-GLifA  156 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVS----------PKDDTFLSSSLDKTVRLWDLRVK-KC-QGLL---NLSGRPIAAFDPE-GLIFA  156 (311)
T ss_pred             EEEcCCCCceEEEEEec----------CCCCeEEecccCCeEEeeEecCC-CC-ceEE---ecCCCcceeECCC-CcEEE
Confidence            33332211 12223222          34445555555578888888754 21 1222   2334567899995 64666


Q ss_pred             EECCCCeEEEEecCC---CCeEEEEE--CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEE-eCC
Q psy14258        373 AELTSYVIERRKMFG---RGKEVVID--TGIYNVEGMAVDWMANNLYWTDAGIGTINVAK-ISD  430 (440)
Q Consensus       373 ~d~~~~~I~r~~~~g---~~~~~~~~--~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~-~~g  430 (440)
                      +-..++.|.-.++..   ...+++..  .....-++|.+-..|+.|-.+.. .+.+.+++ .+|
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G  219 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDG  219 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCC
Confidence            666666787777653   23333322  22344567777777776666644 33344444 444

>KOG1274|consensus

Probab=87.72  E-value=44  Score=35.99  Aligned_cols=233  Identities=11%  Similarity=-0.020  Sum_probs=120.0

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEE--ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFC--THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~--~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      .-.. ++|+.+..||.+   +.|.+.  .-+-...+++.. .-....+|+.+.  . .|.+-...  ..|.|+..+....
T Consensus        15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s--~-~f~~~s~~--~tv~~y~fps~~~   88 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYS--N-HFLTGSEQ--NTVLRYKFPSGEE   88 (933)
T ss_pred             ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecc--c-ceEEeecc--ceEEEeeCCCCCc
Confidence            3556 888888877766   333332  222122222211 112345666654  2 33333332  5899999887766


Q ss_pred             eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCce-eeeeEecC-EEEEEecCCCeEEEE
Q psy14258        209 FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNL-YDITVFEN-NLFVTSWRNQSIIRV  286 (440)
Q Consensus       209 ~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p-~gl~~~~~-~ly~td~~~~~i~~~  286 (440)
                      ..++..--..-.-++++..+..+- +-...-.|..++.+.......+.+  ...| .+|.++.+ .+..+...+|.|...
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~ia-agsdD~~vK~~~~~D~s~~~~lrg--h~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIA-AGSDDTAVKLLNLDDSSQEKVLRG--HDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEE-eecCceeEEEEeccccchheeecc--cCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            656543211235678874444333 323334677777755555444443  3333 67888755 444445567888888


Q ss_pred             eccCCCceEEEecCCCCeEEE----EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-C-C-CCce
Q psy14258        287 NKFNSDDYETIANFSRPFAIH----IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-D-L-KRPS  359 (440)
Q Consensus       287 ~~~~g~~~~~~~~~~~p~~~~----v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~-~-~~p~  359 (440)
                      +..++....++.+...-+++.    .-.+..+|.   ...+++++..  +.|..++.++-    +....+. . . ..-.
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk---~g~la~~~~d--~~Vkvy~r~~w----e~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK---GGTLAVPPVD--NTVKVYSRKGW----ELQFKLRDKLSSSKFS  236 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCC---CCeEEeeccC--CeEEEEccCCc----eeheeecccccccceE
Confidence            887666555554443322221    111222332   1245555544  77777776665    1111111 1 1 1245


Q ss_pred             EEEEEcCCCEEEEE-ECCCCeEEEEecCC
Q psy14258        360 VIDYHEKEEYIYYA-ELTSYVIERRKMFG  387 (440)
Q Consensus       360 ~l~~d~~~~~vy~~-d~~~~~I~r~~~~g  387 (440)
                      .+.++|.+.  |.| ....+.|..-+.+.
T Consensus       237 ~~~wsPnG~--YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  237 DLQWSPNGK--YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEEcCCCc--EEeeeccCCcEEEEeccc
Confidence            677888644  444 34466676666663

>KOG2139|consensus

Probab=87.43  E-value=28  Score=33.42  Aligned_cols=193  Identities=15%  Similarity=0.084  Sum_probs=99.5

Q ss_pred             EEEEeCCCCEEEEEeCCCCcEEEEE-ccCCCcEEEecCCccCceeeeeEecC-EEEEE-ecCCCeEEEEeccCCCceEEE
Q psy14258        221 GVTVDFPTKHVYWVDTYLDFIDRIN-YDGTDRKTIRKGFPVQNLYDITVFEN-NLFVT-SWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       221 gl~vD~~~~~ly~~d~~~~~i~~~~-~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~t-d~~~~~i~~~~~~~g~~~~~~  297 (440)
                      -|+|--..+-.+|++.......+.- .-++.+..+.++..-.....|...+| ....+ ...+..|..-+..+|....+.
T Consensus       155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~  234 (445)
T KOG2139|consen  155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI  234 (445)
T ss_pred             eeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence            4666667888999987654333321 12233333333211112234555554 22222 233444555555555444332


Q ss_pred             -ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEE-cCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258        298 -ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLT-FKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL  375 (440)
Q Consensus       298 -~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~-~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~  375 (440)
                       .++....-++.          .|++..+++.+- .+++++= .+.. -..+.....++  +..+--++|.+.+|.++-.
T Consensus       235 ~~glgg~slLkw----------SPdgd~lfaAt~-davfrlw~e~q~-wt~erw~lgsg--rvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  235 PKGLGGFSLLKW----------SPDGDVLFAATC-DAVFRLWQENQS-WTKERWILGSG--RVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             ccCCCceeeEEE----------cCCCCEEEEecc-cceeeeehhccc-ceecceeccCC--ceeeeeecCCCCEEEEEEc
Confidence             11111111111          245333333332 3444433 2222 22222232232  5566679999999999999


Q ss_pred             CCCeEEEEecCCCC---------eEEEEECCC-------------CCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258        376 TSYVIERRKMFGRG---------KEVVIDTGI-------------YNVEGMAVDWMANNLYWTDAGIGTINVAK  427 (440)
Q Consensus       376 ~~~~I~r~~~~g~~---------~~~~~~~~~-------------~~~~glAvD~~~~~lYwtd~~~~~I~~~~  427 (440)
                      +.-+||+...++..         .++.+.+++             +.+.-||-|+.+.+|-++=-+...|+.++
T Consensus       301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k  374 (445)
T KOG2139|consen  301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCK  374 (445)
T ss_pred             CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhh
Confidence            99999999988632         123332232             45788999998888877766666555443

>PTZ00420 coronin; Provisional

Probab=86.76  E-value=43  Score=34.90  Aligned_cols=209  Identities=9%  Similarity=-0.002  Sum_probs=110.7

Q ss_pred             CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC--ce------eEEecCccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258        169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE--RF------PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF  240 (440)
Q Consensus       169 ~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~--~~------~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~  240 (440)
                      ........++..|..+.++.+-...  +.|...++....  ..      ..+...-.....+++.+.+..++.+-...+.
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~D--gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt  149 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSED--LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF  149 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence            3445678999998756665554333  567766764211  11      1112222346778888777777666555677


Q ss_pred             EEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEE-EeccCCCCCCC
Q psy14258        241 IDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIH-IYHRQKQPDAL  318 (440)
Q Consensus       241 i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~-v~~~~~qp~~~  318 (440)
                      |..-++...........  -.....+++..+ .++.+....+.|...+..+++....+..-....... +......    
T Consensus       150 IrIWDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs----  223 (568)
T PTZ00420        150 VNIWDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG----  223 (568)
T ss_pred             EEEEECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc----
Confidence            87777754432221111  124567776543 555655556778888887765544332211111111 1110000    


Q ss_pred             CCc-eeEEeecCC---ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        319 KPS-TFLLYAKGK---PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       319 ~~~-~~l~~~~~~---~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                       ++ .+|+.+-..   .+.|...++...... -....+.....+.--.||+.++.+|++-.+.++|+-.++..
T Consensus       224 -~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p-l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        224 -GDDNYILSTGFSKNNMREMKLWDLKNTTSA-LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             -CCCCEEEEEEcCCCCccEEEEEECCCCCCc-eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence             12 344432211   135777776643111 11122222112223467888899999988999999998864

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.09  E-value=17  Score=35.34  Aligned_cols=117  Identities=11%  Similarity=0.136  Sum_probs=70.6

Q ss_pred             eEEEEecCCceEEEEEcC----CCCCceEEEEc-C-CCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEe
Q psy14258        152 AIYFCTHYMEHCMIAIDL----NLSKPRGIALD-P-TSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVD  225 (440)
Q Consensus       152 ~I~~~~~dg~~~~~~~~~----~~~~P~~iavd-~-~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD  225 (440)
                      .+..|+.....++++...    -+.....+..- + ..+.|++++.... .+|...+.+|...+.|......--.-+.+|
T Consensus       211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~-~hly~~~~~~~~~~~lT~G~~~V~~i~~~d  289 (353)
T PF00930_consen  211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY-RHLYLYDLDGGKPRQLTSGDWEVTSILGWD  289 (353)
T ss_dssp             EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS-EEEEEEETTSSEEEESS-SSS-EEEEEEEE
T ss_pred             EEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC-cEEEEEcccccceeccccCceeecccceEc
Confidence            577888866555555442    23344455542 3 3455566664333 689999999987654443331111247889


Q ss_pred             CCCCEEEEEeCC----CCcEEEEEcc-CCCcEEEecCCccCceeeeeEecC
Q psy14258        226 FPTKHVYWVDTY----LDFIDRINYD-GTDRKTIRKGFPVQNLYDITVFEN  271 (440)
Q Consensus       226 ~~~~~ly~~d~~----~~~i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~~  271 (440)
                      ..+++||+.-..    ...+++++++ ++.++.+.... ..+ +.+++..+
T Consensus       290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-~~~-~~~~~Spd  338 (353)
T PF00930_consen  290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-GDH-YSASFSPD  338 (353)
T ss_dssp             CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-STT-EEEEE-TT
T ss_pred             CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-CCc-eEEEECCC
Confidence            899999998765    3489999999 77776665532 223 45555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=85.85  E-value=36  Score=33.18  Aligned_cols=185  Identities=8%  Similarity=0.007  Sum_probs=85.9

Q ss_pred             CCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCc---cCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCC
Q psy14258        228 TKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFP---VQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRP  303 (440)
Q Consensus       228 ~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~---~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p  303 (440)
                      ++++|+.. ..+.+..++. +|..+-.......   +.......+.++.+|+.. ..+.+..++..+|+..-.. ....|
T Consensus       145 ~~~v~v~~-~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~-~~g~v~ald~~tG~~~W~~-~~~~~  221 (377)
T TIGR03300       145 NGLVVVRT-NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGF-AGGKLVALDLQTGQPLWEQ-RVALP  221 (377)
T ss_pred             CCEEEEEC-CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEEC-CCCEEEEEEccCCCEeeee-ccccC
Confidence            56777754 4567888876 4443332221100   001112244567777765 3678889998888643211 11111


Q ss_pred             eE---EE-EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCe
Q psy14258        304 FA---IH-IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV  379 (440)
Q Consensus       304 ~~---~~-v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~  379 (440)
                      .+   +. .......|..  .++.+|+... .+.++.+++...    +...... .......+++  +++||+.+ ..+.
T Consensus       222 ~g~~~~~~~~~~~~~p~~--~~~~vy~~~~-~g~l~a~d~~tG----~~~W~~~-~~~~~~p~~~--~~~vyv~~-~~G~  290 (377)
T TIGR03300       222 KGRTELERLVDVDGDPVV--DGGQVYAVSY-QGRVAALDLRSG----RVLWKRD-ASSYQGPAVD--DNRLYVTD-ADGV  290 (377)
T ss_pred             CCCCchhhhhccCCccEE--ECCEEEEEEc-CCEEEEEECCCC----cEEEeec-cCCccCceEe--CCEEEEEC-CCCe
Confidence            11   00 0000011111  1356666543 367887877533    1111111 1112223333  67899886 5678


Q ss_pred             EEEEecCCCC-eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        380 IERRKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       380 I~r~~~~g~~-~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      |+.++..... .-..-..+-......++.  +++||..+. .+.|..++.+
T Consensus       291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i~--g~~l~~~~~-~G~l~~~d~~  338 (377)
T TIGR03300       291 VVALDRRSGSELWKNDELKYRQLTAPAVV--GGYLVVGDF-EGYLHWLSRE  338 (377)
T ss_pred             EEEEECCCCcEEEccccccCCccccCEEE--CCEEEEEeC-CCEEEEEECC
Confidence            8888885321 111101010111222343  567777653 4567777654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0279|consensus

Probab=85.74  E-value=30  Score=32.04  Aligned_cols=240  Identities=8%  Similarity=-0.008  Sum_probs=135.9

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFC  156 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~  156 (440)
                      ++.+++.-.....+|.+-.....|....+...+.. +    ..+.-.+...-+...+ ++-..++ ..++    +.++.-
T Consensus        17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-~----G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlW   90 (315)
T KOG0279|consen   17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-Y----GVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLW   90 (315)
T ss_pred             eEEEEEeecCCCceEEEcccceEEEEEEeccCccc-c----CceeeeeeccceEecceEEccCCc-eEEeccccceEEEE
Confidence            36666666665667777666666666665543211 0    0001112222334555 6655544 4444    456666


Q ss_pred             ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-ccCceEEEEeCCCCEEEEEe
Q psy14258        157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-IVYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-~~~P~gl~vD~~~~~ly~~d  235 (440)
                      ++.+...+..+...-....++++++.+..|- +-...  ..|...+.-|.-..++.... -.|.+-+.+.|.+...|++.
T Consensus        91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qiv-SGSrD--kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIV-SGSRD--KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             EecCCcEEEEEEecCCceEEEEecCCCceee-cCCCc--ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence            8887544444444556788999999655543 33332  36777776666665565544 56888899998887777777


Q ss_pred             CCCC-cEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCC
Q psy14258        236 TYLD-FIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQK  313 (440)
Q Consensus       236 ~~~~-~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~  313 (440)
                      ...+ .+..=++++-....-+.+. ......+++..| .+-.+-...+.++-.+...++....+........+.+. |.+
T Consensus       168 ~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fs-pnr  245 (315)
T KOG0279|consen  168 ASWDKTVKVWNLRNCQLRTTFIGH-SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFS-PNR  245 (315)
T ss_pred             ccCCceEEEEccCCcchhhccccc-cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEec-CCc
Confidence            6555 4555566665544433331 344566677655 66666556677777777767665544433333344333 222


Q ss_pred             CCCCCCCceeEEeecCCccEEEEEEcCCC
Q psy14258        314 QPDALKPSTFLLYAKGKPAIIKGLTFKRD  342 (440)
Q Consensus       314 qp~~~~~~~~l~~~~~~~~~I~~i~~~~~  342 (440)
                              -.|+.+..  ..|...+++..
T Consensus       246 --------ywL~~at~--~sIkIwdl~~~  264 (315)
T KOG0279|consen  246 --------YWLCAATA--TSIKIWDLESK  264 (315)
T ss_pred             --------eeEeeccC--CceEEEeccch
Confidence                    23455544  55777777665

>KOG2110|consensus

Probab=85.61  E-value=35  Score=32.78  Aligned_cols=149  Identities=13%  Similarity=0.130  Sum_probs=86.7

Q ss_pred             ccce--eeeecCCcEEEe--ceEEEEecCCce-EEEEEcCCCCCceEE-EEcCCCC--eEEEEEcCCCCCcEEEEeCCCC
Q psy14258        135 DGTE--RFPMVTHKIVYP--EAIYFCTHYMEH-CMIAIDLNLSKPRGI-ALDPTSG--YMFFTKWGATRPMLERSLLDGT  206 (440)
Q Consensus       135 ~p~~--avD~~~~~lY~~--~~I~~~~~dg~~-~~~~~~~~~~~P~~i-avd~~~g--~lywtd~~~~~~~I~r~~~dG~  206 (440)
                      -|..  +|--..+.|.++  ..|++.++..-. ..+|-. .-.+|.|+ |+.+.+.  +|=+-+... .+.|..++..--
T Consensus        86 fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t-~~~n~~gl~AlS~n~~n~ylAyp~s~t-~GdV~l~d~~nl  163 (391)
T KOG2110|consen   86 FPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIET-TPPNPKGLCALSPNNANCYLAYPGSTT-SGDVVLFDTINL  163 (391)
T ss_pred             cCCceEEEEEccceEEEEEcccEEEEecccceeehhhhc-cCCCccceEeeccCCCCceEEecCCCC-CceEEEEEcccc
Confidence            4555  666666667777  789999887543 333322 22466643 3444333  444333332 367888777654


Q ss_pred             CceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEE--ccCCCcEEEecCCccCceeeeeEecCEEEEEe-cCCCeE
Q psy14258        207 ERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN--YDGTDRKTIRKGFPVQNLYDITVFENNLFVTS-WRNQSI  283 (440)
Q Consensus       207 ~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~--~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td-~~~~~i  283 (440)
                      .....+..--+.-..|+++ ..|.+.-+-+..++|.|+-  .+|+....+..|...-..+.|++..+.-|.+- ..++.|
T Consensus       164 ~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             eeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            4444443323345679998 5566666666777777765  36766666666654445678888887444443 345555


Q ss_pred             EEE
Q psy14258        284 IRV  286 (440)
Q Consensus       284 ~~~  286 (440)
                      ..+
T Consensus       243 HiF  245 (391)
T KOG2110|consen  243 HIF  245 (391)
T ss_pred             EEE
Confidence            443

>KOG0291|consensus

Probab=85.42  E-value=53  Score=34.71  Aligned_cols=187  Identities=10%  Similarity=0.028  Sum_probs=113.4

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEc-cCC
Q psy14258        171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINY-DGT  249 (440)
Q Consensus       171 ~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~-dG~  249 (440)
                      ......+++.| .|.+..|-...  ++|...+...+--..-+.+.-....++.+. ..++..++..-.+++..-|+ ...
T Consensus       350 ~~~i~~l~YSp-Dgq~iaTG~eD--gKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  350 SDRITSLAYSP-DGQLIATGAED--GKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             ccceeeEEECC-CCcEEEeccCC--CcEEEEeccCceEEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccc
Confidence            45667888888 57776665544  578887776554444444433445666665 45555555555566666554 344


Q ss_pred             CcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeE-EEEeccCCCCCCCCCceeEEe
Q psy14258        250 DRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFA-IHIYHRQKQPDALKPSTFLLY  326 (440)
Q Consensus       250 ~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~-~~v~~~~~qp~~~~~~~~l~~  326 (440)
                      +.+++.... -.+-.-++++  ++-+...+...=.|+.....+|+...++++-+.|-. +.+.          |.+.+++
T Consensus       426 NfRTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~----------~~~~~La  494 (893)
T KOG0291|consen  426 NFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS----------PDGSLLA  494 (893)
T ss_pred             eeeeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc----------cccCeEE
Confidence            444443321 1122456676  566666666666788888889998888887666643 4333          3444666


Q ss_pred             ecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258        327 AKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL  375 (440)
Q Consensus       327 ~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~  375 (440)
                      +-+-...|++.++=.. .++...+++  -+...+++|.|.++.|-++..
T Consensus       495 S~SWDkTVRiW~if~s-~~~vEtl~i--~sdvl~vsfrPdG~elaVaTl  540 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFSS-SGTVETLEI--RSDVLAVSFRPDGKELAVATL  540 (893)
T ss_pred             eccccceEEEEEeecc-CceeeeEee--ccceeEEEEcCCCCeEEEEEe
Confidence            6565677887776443 222222332  235678888888888888864

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.29  E-value=4.3  Score=39.09  Aligned_cols=74  Identities=19%  Similarity=0.237  Sum_probs=48.1

Q ss_pred             CCceEEEEEcCCCEEEEEECCCCe------EEEEecCCC----CeEEEE------EC-C--C----CCeeeEEEecCCCc
Q psy14258        356 KRPSVIDYHEKEEYIYYAELTSYV------IERRKMFGR----GKEVVI------DT-G--I----YNVEGMAVDWMANN  412 (440)
Q Consensus       356 ~~p~~l~~d~~~~~vy~~d~~~~~------I~r~~~~g~----~~~~~~------~~-~--~----~~~~glAvD~~~~~  412 (440)
                      ..-+||+|++.++ .||+=+-.+.      ++++.++..    ..-.+.      .. |  +    -.+|||+++ -.+.
T Consensus        20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~-~~g~   97 (326)
T PF13449_consen   20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP-PDGS   97 (326)
T ss_pred             CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEe-cCCC
Confidence            3457999997555 3454333344      787776641    110111      11 1  1    168899994 5788


Q ss_pred             EEEEeCCC------CeEEEEEeCCC
Q psy14258        413 LYWTDAGI------GTINVAKISDF  431 (440)
Q Consensus       413 lYwtd~~~------~~I~~~~~~g~  431 (440)
                      +||++-+.      .+|.+++++|+
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~  122 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGR  122 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCc
Confidence            99999999      99999999993

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=84.46  E-value=0.87  Score=27.60  Aligned_cols=30  Identities=37%  Similarity=0.656  Sum_probs=22.2

Q ss_pred             cccCCCCCCC--CCCcccCCCceEEc-cCCeee
Q psy14258         14 ADECLIDGSC--DQTCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus        14 ~~~C~~~~~C--s~~C~n~~~~~~C~-~~g~~l   43 (440)
                      +++|.....|  .+.|.+..++|.|. ..+|..
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g   34 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG   34 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence            4667653457  45799999999999 888864

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>smart00181 EGF Epidermal growth factor-like domain

Probab=84.44  E-value=0.87  Score=27.35  Aligned_cols=27  Identities=41%  Similarity=0.775  Sum_probs=21.4

Q ss_pred             CCCCCCCCC-CcccCCCceEEc-cCCeee
Q psy14258         17 CLIDGSCDQ-TCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus        17 C~~~~~Cs~-~C~n~~~~~~C~-~~g~~l   43 (440)
                      |..+..|.+ .|.+..++|.|. ..||.+
T Consensus         2 C~~~~~C~~~~C~~~~~~~~C~C~~g~~g   30 (35)
T smart00181        2 CASGGPCSNGTCINTPGSYTCSCPPGYTG   30 (35)
T ss_pred             CCCcCCCCCCEEECCCCCeEeECCCCCcc
Confidence            333356777 899999999999 999876

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=83.63  E-value=35  Score=31.21  Aligned_cols=81  Identities=12%  Similarity=0.256  Sum_probs=47.2

Q ss_pred             cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC---CceEEEEEcCCCEEEEEEC
Q psy14258        299 NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK---RPSVIDYHEKEEYIYYAEL  375 (440)
Q Consensus       299 ~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~---~p~~l~~d~~~~~vy~~d~  375 (440)
                      +.+.|+++..++..+-      ..|.++...+.+.|....+-..+...-....+..+.   +..|+..|.+.+.||++..
T Consensus       151 ~~s~~YGl~lyrs~kt------gd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE  224 (364)
T COG4247         151 SSSSAYGLALYRSPKT------GDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE  224 (364)
T ss_pred             CcccceeeEEEecCCc------CcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec
Confidence            4456899999874432      234444444457777666533212211111122222   3458999999999999973


Q ss_pred             CCCeEEEEecC
Q psy14258        376 TSYVIERRKMF  386 (440)
Q Consensus       376 ~~~~I~r~~~~  386 (440)
                       .-.|++...+
T Consensus       225 -dvaiWK~~Ae  234 (364)
T COG4247         225 -DVAIWKYEAE  234 (364)
T ss_pred             -cceeeecccC
Confidence             5567777654

>KOG3914|consensus

Probab=81.28  E-value=44  Score=32.38  Aligned_cols=153  Identities=9%  Similarity=-0.009  Sum_probs=97.6

Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceE--EEEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC-CCCceeE
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHC--MIAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPM  211 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~--~~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d-G~~~~~l  211 (440)
                      +.-..++.|+++   .+..+...+++..  +.+.. ..-..|.+|..+...-..-.+|...+...+...+.+ |..+..+
T Consensus        69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l  148 (390)
T KOG3914|consen   69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL  148 (390)
T ss_pred             ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh
Confidence            333445556666   4555666665543  11111 123678888888887788888866442334444434 5554433


Q ss_pred             EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccC
Q psy14258        212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFN  290 (440)
Q Consensus       212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~  290 (440)
                      .  .+.--..+++.+..+.|.-+| ...+|+...+.+.+. +....|. -.....|++..+++.|+..+.+.|+.-+-.+
T Consensus       149 G--hvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  149 G--HVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDNYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             h--hhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhhcccc-HhheeeeeeccCceeeecCCCCcEEEEeccc
Confidence            2  234455788887788888887 567898888887653 2222221 2346789999999999999999999888888


Q ss_pred             CCceE
Q psy14258        291 SDDYE  295 (440)
Q Consensus       291 g~~~~  295 (440)
                      |+...
T Consensus       225 gk~L~  229 (390)
T KOG3914|consen  225 GKLLD  229 (390)
T ss_pred             CCccc
Confidence            87754

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=80.02  E-value=62  Score=31.58  Aligned_cols=106  Identities=16%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             CCeEEEEEcCCCCCcEEEEeC-CCCCceeEEecC-ccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCC-
Q psy14258        183 SGYMFFTKWGATRPMLERSLL-DGTERFPMVTHK-IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGF-  258 (440)
Q Consensus       183 ~g~lywtd~~~~~~~I~r~~~-dG~~~~~l~~~~-~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~-  258 (440)
                      .|.||+.++.   +.+...+. +|...-..-... ..+..+..+  ..+.+|+.. ..+.+..++.+ |..+-...... 
T Consensus       111 ~G~i~~g~~~---g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~  184 (370)
T COG1520         111 DGKIYVGSWD---GKLYALDASTGTLVWSRNVGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP  184 (370)
T ss_pred             CCeEEEeccc---ceEEEEECCCCcEEEEEecCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc
Confidence            5888888877   36777777 565443322222 112223333  467777764 45678888876 55443322211 


Q ss_pred             -ccCceeeeeEecCEEEEEecC-CCeEEEEeccCCCce
Q psy14258        259 -PVQNLYDITVFENNLFVTSWR-NQSIIRVNKFNSDDY  294 (440)
Q Consensus       259 -~~~~p~gl~~~~~~ly~td~~-~~~i~~~~~~~g~~~  294 (440)
                       .........+..+.+|+.... +..++.++..+|...
T Consensus       185 ~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~  222 (370)
T COG1520         185 LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK  222 (370)
T ss_pred             cccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence             122223333778889998653 447888888777553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	440
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		4e-43
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		2e-07
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		4e-43
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		2e-07
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		1e-29
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		1e-07
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		1e-29
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		1e-07
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		4e-28
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		1e-11
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		7e-27
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		1e-11
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		4e-20
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		7e-06
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		5e-20
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		5e-06
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		5e-20
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		7e-06
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		6e-20
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		5e-06
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		1e-19
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		9e-06
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		4e-16
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		1e-12
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		4e-16
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		1e-12
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		4e-16
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		1e-12
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		5e-15
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		4e-04

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 189/376 (50%), Gaps = 69/376 (18%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
           L  P G+A D     +++T     R  +E S LDG+ R      K+++ +          
Sbjct: 83  LLSPDGLACDWLGEKLYWTDSETNR--IEVSNLDGSLR------KVLFWQ---------- 124
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
                    L +PR IALDP+SG+M++T WG   P +ER+ +DG+ RF ++  +I +P G
Sbjct: 125 --------ELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNG 175
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ 281
           +T+D+  + +YW D  L+FI + N DGT+R+ + KG  + + + +T+FE+ L+ T W   
Sbjct: 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWSTH 234
Query: 282 SIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKP--------STFLLYAKGKP- 331
           SI+  NK+  +    I ++   P  IH + +Q+QP+A  P        S   L +  KP 
Sbjct: 235 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 294
Query: 332 ---------AIIKGLTFKRDGTTEQAIMP-ITDLKRPSV--------------------I 361
                     +++     +DG TE  ++   TDL+R S+                    I
Sbjct: 295 YQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAI 354
Query: 362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG 421
           DY   E YIY+ +     I R  + G G + V+   I + +G+AVDW+A NLYWTD G  
Sbjct: 355 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD 414
Query: 422 TINVAKISDFSIRKVL 437
            I V +++  ++RK+L
Sbjct: 415 RIEVTRLNG-TMRKIL 429

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 321 STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI 380
           +  LLYA  +   +   T  +    E A + +  L+  + +D+      IY+++++   I
Sbjct: 9   APLLLYANRRDLRLVDATNGK----ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 64
Query: 381 ERRKMFGRGKEV--VIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
           +R + F + + V  V+ +G+ + +G+A DW+   LYWTD+    I V+ + D S+RKVL+
Sbjct: 65  KRTE-FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 122

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 189/376 (50%), Gaps = 69/376 (18%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
           L  P G+A D     +++T     R  +E S LDG+ R      K+++ +          
Sbjct: 75  LLSPDGLACDWLGEKLYWTDSETNR--IEVSNLDGSLR------KVLFWQ---------- 116
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
                    L +PR IALDP+SG+M++T WG   P +ER+ +DG+ RF ++  +I +P G
Sbjct: 117 --------ELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNG 167
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ 281
           +T+D+  + +YW D  L+FI + N DGT+R+ + KG  + + + +T+FE+ L+ T W   
Sbjct: 168 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWSTH 226
Query: 282 SIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKP--------STFLLYAKGKP- 331
           SI+  NK+  +    I ++   P  IH + +Q+QP+A  P        S   L +  KP 
Sbjct: 227 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 286
Query: 332 ---------AIIKGLTFKRDGTTEQAIMP-ITDLKRPSV--------------------I 361
                     +++     +DG TE  ++   TDL+R S+                    I
Sbjct: 287 YQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAI 346
Query: 362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG 421
           DY   E YIY+ +     I R  + G G + V+   I + +G+AVDW+A NLYWTD G  
Sbjct: 347 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD 406
Query: 422 TINVAKISDFSIRKVL 437
            I V +++  ++RK+L
Sbjct: 407 RIEVTRLNG-TMRKIL 421

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 321 STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI 380
           +  LLYA  +   +   T  +    E A + +  L+  + +D+      IY+++++   I
Sbjct: 1   APLLLYANRRDLRLVDATNGK----ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 56
Query: 381 ERRKMFGRGKEV--VIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
           +R + F + + V  V+ +G+ + +G+A DW+   LYWTD+    I V+ + D S+RKVL+
Sbjct: 57  KRTE-FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 114

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 29/220 (13%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
           L  P G+A D     +++T     R  +E S LDG+ R      K+++ +          
Sbjct: 78  LLSPDGLACDWLGEKLYWTDSETNR--IEVSNLDGSLR------KVLFWQ---------- 119
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
                    L +PR IALDP+SG+M++T WG   P +ER+ +DG+ RF ++  +I +P G
Sbjct: 120 --------ELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNG 170
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ 281
           +T+D+  + +YW D  L+FI + N DGT+R+ + KG  + + + +T+FE+ L+ T W   
Sbjct: 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWSTH 229
Query: 282 SIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKP 320
           SI+  NK+  +    I ++   P  IH + +Q+QP+A  P
Sbjct: 230 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 269

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 321 STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI 380
           +  LLYA  +   +   T  +    E A + +  L+  + +D+      IY+++++   I
Sbjct: 4   APLLLYANRRDLRLVDATNGK----ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 59
Query: 381 ERRKMFGRGKEV--VIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
           +R + F + + V  V+ +G+ + +G+A DW+   LYWTD+    I V+ + D S+RKVL+
Sbjct: 60  KRTE-FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 117

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 29/220 (13%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
           L  P G+A D     +++T     R  +E S LDG+ R      K+++ +          
Sbjct: 75  LLSPDGLACDWLGEKLYWTDSETNR--IEVSNLDGSLR------KVLFWQ---------- 116
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
                    L +PR IALDP+SG+M++T WG   P +ER+ +DG+ RF ++  +I +P G
Sbjct: 117 --------ELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNG 167
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ 281
           +T+D+  + +YW D  L+FI + N DGT+R+ + KG  + + + +T+FE+ L+ T W   
Sbjct: 168 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWSTH 226
Query: 282 SIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKP 320
           SI+  NK+  +    I ++   P  IH + +Q+QP+A  P
Sbjct: 227 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 266

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 346 EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEV--VIDTGIYNVEG 403
           E A + +  L+  + +D+      IY+++++   I+R + F + + V  V+ +G+ + +G
Sbjct: 22  ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE-FNKTESVQNVVVSGLLSPDG 80
Query: 404 MAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
           +A DW+   LYWTD+    I V+ + D S+RKVL+
Sbjct: 81  LACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 114

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 147/333 (44%), Gaps = 57/333 (17%)
Query: 11  CVDADECLIDGSCDQTCTNTHLSY-TYTDEGFSFQ----GVKTHLYETIEAFWEECFGPM 65
           C D +EC  +G C Q CTN+  ++  + + G+  +      K    E +  F        
Sbjct: 41  CQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 100
Query: 66  DIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSK--------------------- 104
            +    E    L   + AI    H+    +   D+ L +                     
Sbjct: 101 VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 160
Query: 105 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCM 164
           P G+A+D     +++T  G +R  +E + LDG  R      K++  ++            
Sbjct: 161 PGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHR------KVLLWQS------------ 200
Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV 224
                 L KPR IAL P  G +++T WG T P +E S +DG+ R  +    + +P G+T+
Sbjct: 201 ------LEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTI 253
Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRKT-IRKGFPVQNLYDITVFENNLFVTSWRNQSI 283
           D+  + +YWVD     I+R N DG+ RK  I +G P  + + ITVFE++L+ T W  +SI
Sbjct: 254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP--HPFAITVFEDSLYWTDWHTKSI 311
Query: 284 IRVNKFNSDDYETIAN-FSRPFAIHIYHRQKQP 315
              NKF   + E I N    P  IH  H Q+QP
Sbjct: 312 NSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP 344

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY 371
           ++   AL P   LL+A  +  I + L  + + T     + + +L+    +D+H + E ++
Sbjct: 78  RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYT-----LLLNNLENAIALDFHHRRELVF 131
Query: 372 YAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDF 431
           ++++T   I R  + G   E V+ TG+ +  G+AVDW+ + LYWTD+G   I VA + D 
Sbjct: 132 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL-DG 190
Query: 432 SIRKVL 437
           + RKVL
Sbjct: 191 AHRKVL 196

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 15  DECLIDGSCDQTCTNTHLSY-TYTDEGFSFQ----GVKTHLYETIEAFWEECFGPMDIEE 69
           +EC  +G C Q CTN+  ++  + + G+  +      K    E +  F         +  
Sbjct: 2   NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH 61
Query: 70  WDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSK---------------------PRGI 108
             E    L   + AI    H+    +   D+ L +                     P G+
Sbjct: 62  RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 121
Query: 109 ALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAID 168
           A+D     +++T  G +R  +E + LDG  R                         + + 
Sbjct: 122 AVDWVHDKLYWTDSGTSR--IEVANLDGAHR------------------------KVLLW 155
Query: 169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT 228
            +L KPR IAL P  G +++T WG T P +E S +DG+ R  +    + +P G+T+D+  
Sbjct: 156 QSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG 214
Query: 229 KHVYWVDTYLDFIDRINYDGTDRKT-IRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVN 287
           + +YWVD     I+R N DG+ RK  I +G P  + + ITVFE++L+ T W  +SI   N
Sbjct: 215 RRMYWVDAKHHVIERANLDGSHRKAVISQGLP--HPFAITVFEDSLYWTDWHTKSINSAN 272
Query: 288 KFNSDDYETIAN-FSRPFAIHIYHRQKQP 315
           KF   + E I N    P  IH  H Q+QP
Sbjct: 273 KFTGKNQEIIRNKLHFPMDIHTLHPQRQP 301

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY 371
           ++   AL P   LL+A  +  I + L  + + T     + + +L+    +D+H + E ++
Sbjct: 35  RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYT-----LLLNNLENAIALDFHHRRELVF 88
Query: 372 YAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDF 431
           ++++T   I R  + G   E V+ TG+ +  G+AVDW+ + LYWTD+G   I VA + D 
Sbjct: 89  WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL-DG 147
Query: 432 SIRKVL 437
           + RKVL
Sbjct: 148 AHRKVL 153

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
           N SKPR I +DP  G+M++T WG T   +++  L+G + + +VT  I +P G+T+D  + 
Sbjct: 240 NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 298
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI-----RKGFPVQNLYDITVFENNLFVTSWRNQSII 284
            +YWVD+ L  I  I+ +G +RKTI     R   P    + + VFE+ +F T   N++I 
Sbjct: 299 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFEDKVFWTDIINEAIF 354
Query: 285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
             N+    D   +A N   P  + ++H   QP
Sbjct: 355 SANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 386

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
           I +L+    +D       IY+++L+  +I   +  +  G    + VI   I   +G+AVD
Sbjct: 148 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 207
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
           W+ +N+YWTD+ +GT++VA       RK L++
Sbjct: 208 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 238

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
           N SKPR I +DP  G+M++T WG T   +++  L+G + + +VT  I +P G+T+D  + 
Sbjct: 512 NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 570
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI-----RKGFPVQNLYDITVFENNLFVTSWRNQSII 284
            +YWVD+ L  I  I+ +G +RKTI     R   P    + + VFE+ +F T   N++I 
Sbjct: 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFEDKVFWTDIINEAIF 626
Query: 285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
             N+    D   +A N   P  + ++H   QP
Sbjct: 627 SANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 658

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
           I +L+    +D       IY+++L+  +I   +  +  G    + VI   I   +G+AVD
Sbjct: 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
           W+ +N+YWTD+ +GT++VA       RK L++
Sbjct: 480 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 510

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
           N SKPR I +DP  G+M++T WG T   +++  L+G + + +VT  I +P G+T+D  + 
Sbjct: 200 NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 258
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI-----RKGFPVQNLYDITVFENNLFVTSWRNQSII 284
            +YWVD+ L  I  I+ +G +RKTI     R   P    + + VFE+ +F T   N++I 
Sbjct: 259 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFEDKVFWTDIINEAIF 314
Query: 285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
             N+    D   +A N   P  + ++H   QP
Sbjct: 315 SANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 346

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
           I +L+    +D       IY+++L+  +I   +  +  G    + VI   I   +G+AVD
Sbjct: 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 167
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
           W+ +N+YWTD+ +GT++VA       RK L++
Sbjct: 168 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 198

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV 231
           SKPR I +DP  G+M++T WG T   +++  L+G + + +VT  I +P G+T+D  +  +
Sbjct: 496 SKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 554
Query: 232 YWVDTYLDFIDRINYDGTDRKTIRKGFP-VQNLYDITVFENNLFVTSWRNQSIIRVNKFN 290
           YWVD+ L  I  I+ +G +RKTI +    + + + + VFE+ +F T   N++I   N+  
Sbjct: 555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614
Query: 291 SDDYETIA-NFSRPFAIHIYHRQKQP 315
             D   +A N   P  + ++H+  QP
Sbjct: 615 GSDVNLLAENLLSPEDMVLFHQLTQP 640

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
           I +L+    +D       IY+++L+  +I   +  +  G    + VI   I   +G+AVD
Sbjct: 402 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
           W+ +N+YWTD+ +GT++VA       RK L++
Sbjct: 462 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 492

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
           N SKPR I +DP  G+M++T WG T   +++  L+G + + +VT  I +P G+T+D  + 
Sbjct: 118 NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 176
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI-----RKGFPVQNLYDITVFENNLFVTSWRNQSII 284
            +YWVD+ L  I  I+ +G +RKTI     R   P    + + VFE+ +F T   N++I 
Sbjct: 177 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFEDKVFWTDIINEAIF 232
Query: 285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
             N+    D   +A N   P  + ++H   QP
Sbjct: 233 SANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
           I +L+    +D       IY+++L+  +I   +  +  G    + VI   I   +G+AVD
Sbjct: 26  IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
           W+ +N+YWTD+ +GT++VA       RK L++
Sbjct: 86  WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 116

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 155/352 (44%), Gaps = 42/352 (11%)
Query: 92  EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPE 151
           +H  + +  +L  PR +ALDP  G+M++T+WG  +P ++R+ +DG+ER  +V        
Sbjct: 117 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVP------- 168
Query: 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211
                             N+ +  G+ +D     +++T       ++E S + G  R  +
Sbjct: 169 ------------------NVGRANGLTIDYAKRRLYWTDLDTN--LIESSNMLGLNR-EV 207
Query: 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN 271
           +   + +P+G+T      ++YW D     I+R N      +TI +G  +  + DI VF +
Sbjct: 208 IADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGH-LDYVMDILVFHS 264
Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP 331
           +   + W   +    +  +      +  F      H            P+TFLL+++ K 
Sbjct: 265 S-RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KS 322
Query: 332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKE 391
           AI + +  ++   +   I+PI  L+    IDY   ++ +Y+ +    +I + +  G    
Sbjct: 323 AINRMVIDEQ--QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 380
Query: 392 VVIDTGI--YNVE----GMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
            V+ + +   N+E     +++D  +  +YWT      INV ++   S+  VL
Sbjct: 381 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVL 432

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
           P  FLL+++   A I+ ++ + +       +P+T +K  S +D+   +  IY+ +++   
Sbjct: 10  PEAFLLFSR--RADIRRISLETNNNN--VAIPLTGVKEASALDFDVTDNRIYWTDISLKT 65
Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
           I R  M G   E V++ G+   EGMAVDW+  NLYW D G   I V+K+ D   R+VL
Sbjct: 66  ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVL 122

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 155/352 (44%), Gaps = 42/352 (11%)
Query: 92  EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPE 151
           +H  + +  +L  PR +ALDP  G+M++T+WG  +P ++R+ +DG+ER  +V        
Sbjct: 110 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVP------- 161
Query: 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211
                             N+ +  G+ +D     +++T       ++E S + G  R  +
Sbjct: 162 ------------------NVGRANGLTIDYAKRRLYWTDLDTN--LIESSNMLGLNR-EV 200
Query: 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN 271
           +   + +P+G+T      ++YW D     I+R N      +TI +G  +  + DI VF +
Sbjct: 201 IADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGH-LDYVMDILVFHS 257
Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP 331
           +   + W   +    +  +      +  F      H            P+TFLL+++ K 
Sbjct: 258 SR-QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KS 315
Query: 332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKE 391
           AI + +  ++   +   I+PI  L+    IDY   ++ +Y+ +    +I + +  G    
Sbjct: 316 AINRMVIDEQ--QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 373
Query: 392 VVIDTGI--YNVE----GMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
            V+ + +   N+E     +++D  +  +YWT      INV ++   S+  VL
Sbjct: 374 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVL 425

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
           P  FLL+++   A I+ ++ + +       +P+T +K  S +D+   +  IY+ +++   
Sbjct: 3   PEAFLLFSR--RADIRRISLETNNNN--VAIPLTGVKEASALDFDVTDNRIYWTDISLKT 58
Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
           I R  M G   E V++ G+   EGMAVDW+  NLYW D G   I V+K+ D   R+VL
Sbjct: 59  ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVL 115

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 155/352 (44%), Gaps = 42/352 (11%)
Query: 92  EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPE 151
           +H  + +  +L  PR +ALDP  G+M++T+WG  +P ++R+ +DG+ER  +V        
Sbjct: 112 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVP------- 163
Query: 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211
                             N+ +  G+ +D     +++T       ++E S + G  R  +
Sbjct: 164 ------------------NVGRANGLTIDYAKRRLYWTDLDTN--LIESSNMLGLNR-EV 202
Query: 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN 271
           +   + +P+G+T      ++YW D     I+R N      +TI +G  +  + DI VF +
Sbjct: 203 IADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGH-LDYVMDILVFHS 259
Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP 331
           +   + W   +    +  +      +  F      H            P+TFLL+++ K 
Sbjct: 260 SR-QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KS 317
Query: 332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKE 391
           AI + +  ++   +   I+PI  L+    IDY   ++ +Y+ +    +I + +  G    
Sbjct: 318 AINRMVIDEQ--QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 375
Query: 392 VVIDTGI--YNVE----GMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
            V+ + +   N+E     +++D  +  +YWT      INV ++   S+  VL
Sbjct: 376 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVL 427

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
           P  FLL+++   A I+ ++ + +       +P+T +K  S +D+   +  IY+ +++   
Sbjct: 5   PEAFLLFSR--RADIRRISLETNNNN--VAIPLTGVKEASALDFDVTDNRIYWTDISLKT 60
Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
           I R  M G   E V++ G+   EGMAVDW+  NLYW D G   I V+K+ D   R+VL
Sbjct: 61  ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVL 117

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 28/199 (14%)
Query: 98  IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCT 157
           I  +L  P GIALD     +F+T     R  +E + +DGT+R                  
Sbjct: 74  IRQDLGSPEGIALDHLGRTIFWTDSQLDR--IEVAKMDGTQR------------------ 113
Query: 158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV 217
                  +  D  L  PRGI  DP  G +++T W    P +E S +DGT R  +    + 
Sbjct: 114 ------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167
Query: 218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTS 277
            P G+T D  +  + WVD      + +N     R+ + +G  +Q  + +T +  NL+ T 
Sbjct: 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTD 225
Query: 278 WRNQSIIRVNKFNSDDYET 296
           W+  S+I ++   S + +T
Sbjct: 226 WKTNSVIAMDLAISKEMDT 244

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 367 EEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA 426
           ++ +Y+ +++   I R  + G     +I   + + EG+A+D +   ++WTD+ +  I VA
Sbjct: 47  DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106
Query: 427 KISDFSIRKVLY 438
           K+ D + R+VL+
Sbjct: 107 KM-DGTQRRVLF 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	4e-58
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	7e-39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-20
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	7e-19
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	4e-14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-13
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-12
3v65_B	386	Low-density lipoprotein receptor-related protein;	5e-54
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-15
3v65_B	386	Low-density lipoprotein receptor-related protein;	3e-10
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-53
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	7e-35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-23
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	3e-09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	1e-51
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	3e-23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-20
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	8e-51
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-14
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	5e-09
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-49
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	4e-14
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-09
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	5e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-45
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	4e-18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	9e-12
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-43
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-19
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-19
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	1e-08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	2e-41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	6e-22
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	4e-18
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	1e-13
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	2e-04
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	2e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-06
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-08
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-08
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-04
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	8e-07
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	9e-05
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	2e-06
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	1e-05
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	5e-05
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-04
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-04
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	1e-04
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	1e-04
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-04
2bou_A	143	EGF-like module containing mucin-like hormone rece	6e-04

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  200 bits (509), Expect = 4e-58
 Identities = 107/400 (26%), Positives = 186/400 (46%), Gaps = 65/400 (16%)

Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV-THKIVYPEAI------ 153
            L     +    + G ++++        ++R+  + TE    V    ++ P+ +      
Sbjct: 38  GLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95

Query: 154 ---YFC---THYME-------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLER 200
              Y+    T+ +E          +     L +PR IALDP+SG+M++T WG   P +ER
Sbjct: 96  EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIER 154

Query: 201 SLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPV 260
           + +DG+ RF ++  +I +P G+T+D+  + +YW D  L+FI + N DGT+R+ + KG  +
Sbjct: 155 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SL 213

Query: 261 QNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALK 319
            + + +T+FE+ L+ T W   SI+  NK+  +    I  +   P  IH + +Q+QP+A  
Sbjct: 214 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATN 273

Query: 320 P--------STFLLYAKGKPAI----IKGLTFKRDGTT---------------------- 345
           P        S   L +  KP        G+    +G T                      
Sbjct: 274 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL 333

Query: 346 -----EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYN 400
                   ++ + D++    IDY   E YIY+ +     I R  + G G + V+   I +
Sbjct: 334 DTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAH 393

Query: 401 VEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
            +G+AVDW+A NLYWTD G   I V ++ + ++RK+L   
Sbjct: 394 PDGIAVDWVARNLYWTDTGTDRIEVTRL-NGTMRKILISE 432

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  147 bits (371), Expect = 7e-39
 Identities = 71/335 (21%), Positives = 135/335 (40%), Gaps = 38/335 (11%)

Query: 1   MTFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEE 60
           +      +         + +G C   C  + +   Y     +                + 
Sbjct: 260 IHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG--------------VKL 305

Query: 61  CFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDL-NLSKPRGIALDPTSGYMFF 119
                  ++    L  L    +         +   I + L ++     I  DP  GY+++
Sbjct: 306 LENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYW 365

Query: 120 TKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI---------YFC---THYME------ 161
           T        + RS +DG+    +VT +I +P+ I         Y+    T  +E      
Sbjct: 366 TDD--EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423

Query: 162 -HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPY 220
               I I  +L +PR I LDP  GYM++T WG   P +ER+ LDG++R  +V   + +P 
Sbjct: 424 TMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGWPN 482

Query: 221 GVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN 280
           G+ +D+    +YW D   D I+ +N DGT R+ + +   + +++  T+  + ++ T W+ 
Sbjct: 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED-KIPHIFGFTLLGDYVYWTDWQR 541

Query: 281 QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
           +SI RV+K +++    I        +   +  +  
Sbjct: 542 RSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVI 576

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 93.0 bits (230), Expect = 2e-20
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 323 FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIER 382
            LLYA  +  +            E A + +  L+  + +D+      IY+++++   I+R
Sbjct: 11  LLLYANRR-DLRL---VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKR 66

Query: 383 RKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
            +       + V+ +G+ + +G+A DW+   LYWTD+    I V+ + D S+RKVL+  
Sbjct: 67  TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLFWQ 124

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 88.3 bits (218), Expect = 7e-19
 Identities = 53/287 (18%), Positives = 100/287 (34%), Gaps = 61/287 (21%)

Query: 153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212
           I   T      ++ ++ ++     I  DP  GY+++T        + RS +DG+    +V
Sbjct: 331 ISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDD--EVRAIRRSFIDGSGSQFVV 387

Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FE 270
           T +I +P G+ VD+  +++YW DT  D I+    +GT RK +     ++    I +    
Sbjct: 388 TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE-DLEEPRAIVLDPMV 446

Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK 330
             ++ T W     I     +  D   + N                               
Sbjct: 447 GYMYWTDWGEIPKIERAALDGSDRVVLVN------------------------------- 475

Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK 390
                                 T L  P+ +     E  IY+ +  +  IE     G G+
Sbjct: 476 ----------------------TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513

Query: 391 EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
            V+++  I ++ G  +    + +YWTD    +I            ++
Sbjct: 514 RVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVII 558

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 73.3 bits (179), Expect = 4e-14
 Identities = 68/387 (17%), Positives = 128/387 (33%), Gaps = 52/387 (13%)

Query: 84  IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 143
           I           I I+  +  P G+ LD     +++         + +S LDGT R  +V
Sbjct: 152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTNRQAVV 209

Query: 144 THKIVYPEAI------YFCTHYMEHCMIAIDL-----------NLSKPRGIALDPTSGYM 186
              + +P A+       + T +  H ++A +            ++  P  I         
Sbjct: 210 KGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQP 269

Query: 187 FFTKWGATRPM------LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF 240
             T              L   +    +       K++       D  T+ +         
Sbjct: 270 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT--D 327

Query: 241 IDRINYDGTDRKTIRKGFPVQNLY-----DITVFENNLFVTSWRNQSIIRVNKFNSDDYE 295
           + RI+ D  D   I     ++++      D    E  ++ T    ++I R    +    +
Sbjct: 328 LRRISLDTPDFTDIV--LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSF-IDGSGSQ 384

Query: 296 TI--ANFSRPFAIHIYHRQKQPDALKPSTFLLY-AKGKPAIIKGLTFKRDGTTEQAIMPI 352
            +  A  + P  I          A+      LY        I+      +GT  + I+  
Sbjct: 385 FVVTAQIAHPDGI----------AVDWVARNLYWTDTGTDRIEVTRL--NGTM-RKILIS 431

Query: 353 TDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN 411
            DL+ P  I       Y+Y+ +      IER  + G  + V+++T +    G+A+D+   
Sbjct: 432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEG 491

Query: 412 NLYWTDAGIGTINVAKISDFSIRKVLY 438
            +YW DA    I V        R ++ 
Sbjct: 492 KIYWGDAKTDKIEVMNTDGTGRRVLVE 518

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 15/149 (10%)

Query: 273 LFVTSWRNQSIIRVNKFNSDDYETI--ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK 330
           L       + +  V+  N  +  TI         A+                 + ++   
Sbjct: 12  LLYA--NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG---------LIYWSDVS 60

Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK 390
              IK   F  + T     + ++ L  P  +      E +Y+ +  +  IE   + G  +
Sbjct: 61  EEAIKRTEF--NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118

Query: 391 EVVIDTGIYNVEGMAVDWMANNLYWTDAG 419
           +V+    +     +A+D  +  +YWTD G
Sbjct: 119 KVLFWQELDQPRAIALDPSSGFMYWTDWG 147

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score =  185 bits (471), Expect = 1e-54
 Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 59/345 (17%)

Query: 3   FRGPNKTQCVDADECLIDGSCDQTCTNTHLSY--------TYTDEGFSFQGVKTHLYETI 54
           F+   + +C D DEC    +C Q C N    Y               + + V +  Y   
Sbjct: 29  FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 88

Query: 55  EAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCM------------------- 95
               E     +D  E+   +  L               +                     
Sbjct: 89  TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 148

Query: 96  ---IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEA 152
                I  ++  P G+A+D     +++T        +  +   G                
Sbjct: 149 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGV--------------- 191

Query: 153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212
                            N SKPR I +DP  G+M++T WG T   +++  L+G + + +V
Sbjct: 192 ---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 241

Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFEN 271
           T  I +P G+T+D  +  +YWVD+ L  I  I+ +G +RKTI +    + + + + VFE+
Sbjct: 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 301

Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
            +F T   N++I   N+    D   +A N   P  + ++H   QP
Sbjct: 302 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 346

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 342 DGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK----EVVIDTG 397
                +    I +L+    +D       IY+++L+  +I   ++         + VI   
Sbjct: 98  TLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157

Query: 398 IYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
           I   +G+AVDW+ +N+YWTD+ +GT++VA       RK L++
Sbjct: 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-KGVKRKTLFR 198

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 67.6 bits (164), Expect = 2e-12
 Identities = 66/434 (15%), Positives = 126/434 (29%), Gaps = 112/434 (25%)

Query: 15  DECLID-GSCDQTCTNTHLSYTYTDE-GFSFQGVKTHLYETIEAFWEECFGPMDIEEWDE 72
           +ECL + G C   C +  + Y      GF     +             C      E+ DE
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR------------C------EDIDE 42

Query: 73  GLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS 132
                T +Q  +     Y   C     L+       A+   +   F  +    +  L+R 
Sbjct: 43  CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR- 101

Query: 133 LLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG 192
                      +        +   T    + +   DL+        LD   G        
Sbjct: 102 -------SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-------- 146

Query: 193 ATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK 252
                        +    +++  I  P G+ VD+   ++YW D+ L  +   +  G  RK
Sbjct: 147 ------------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 194

Query: 253 TIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQ 312
                         T+F  N                            S+P AI      
Sbjct: 195 --------------TLFRENG---------------------------SKPRAI------ 207

Query: 313 KQPDALKPSTFLLY---AKGKPAIIK-GLTFKRDGTTEQAIMPITDLKRPS--VIDYHEK 366
                + P    +Y         I K GL    +G    +++   +++ P+   +D    
Sbjct: 208 ----VVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVT-ENIQWPNGITLDLLSG 258

Query: 367 EEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA 426
              +Y+ +   + I    + G  ++ +++         ++    + ++WTD     I  A
Sbjct: 259 R--LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 316

Query: 427 KISDFSIRKVLYKG 440
                S   +L + 
Sbjct: 317 NRLTGSDVNLLAEN 330

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score =  183 bits (466), Expect = 5e-54
 Identities = 84/342 (24%), Positives = 135/342 (39%), Gaps = 55/342 (16%)

Query: 6   PNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDE--------GFSFQGVKTHLYETIEAF 57
            +   C D +EC  +G C Q CTN+  ++    E          S + +           
Sbjct: 36  EDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANR 95

Query: 58  WEECFGPMDIEEWDEGLSFLT------------------FAQEAIYFCTHYMEHCMIAID 99
            +         E+   L+ L                      + I        +    + 
Sbjct: 96  IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155

Query: 100 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHY 159
             L  P G+A+D     +++T  G +R  +E + LDG                       
Sbjct: 156 TGLESPGGLAVDWVHDKLYWTDSGTSR--IEVANLDGA---------------------- 191

Query: 160 MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYP 219
             H  + +  +L KPR IAL P  G +++T WG   P +E S +DG+ R  +    + +P
Sbjct: 192 --HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPRIEASSMDGSGRRIIADTHLFWP 248

Query: 220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR 279
            G+T+D+  + +YWVD     I+R N DG+ RK +     + + + ITVFE++L+ T W 
Sbjct: 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWH 307

Query: 280 NQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKP 320
            +SI   NKF   + E I      P  IH  H Q+QP     
Sbjct: 308 TKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNR 349

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 76.3 bits (187), Expect = 2e-15
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 350 MPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM 409
           + + +L+    +D+H + E ++++++T   I R  + G   E V+ TG+ +  G+AVDW+
Sbjct: 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV 169

Query: 410 ANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
            + LYWTD+G   I VA + D + RKVL  
Sbjct: 170 HDKLYWTDSGTSRIEVANL-DGAHRKVLLW 198

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 62/285 (21%)

Query: 158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV 217
            +   C    +L   +    AL P    +F  +    + +  R        + ++ + + 
Sbjct: 63  AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR------SEYTLLLNNLE 116

Query: 218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT-IRKGFPVQNLYDITVFENNLFVT 276
               +      + V+W D  LD I R N +G++ +  +  G        +    + L+ T
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 176

Query: 277 SWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKG 336
                 I  V   +    + +                                       
Sbjct: 177 DSGTSRI-EVANLDGAHRKVLLW------------------------------------- 198

Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVID 395
                             L++P  I  H  E  IY+ +   +  IE   M G G+ ++ D
Sbjct: 199 ----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 242

Query: 396 TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
           T ++   G+ +D+    +YW DA    I  A +     + V+ +G
Sbjct: 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 287

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  186 bits (474), Expect = 4e-53
 Identities = 79/402 (19%), Positives = 163/402 (40%), Gaps = 69/402 (17%)

Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI------- 153
            + +   +  D T   +++T        + R+ ++G+    +V   + YPE +       
Sbjct: 35  GVKEASALDFDVTDNRIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92

Query: 154 --YFC---THYME-------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS 201
             Y+    T+ +E       H  + +  +L  PR +ALDP  G+M++T+WG  +P ++R+
Sbjct: 93  NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRA 151

Query: 202 LLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQ 261
            +DG+ER  +V + +    G+T+D+  + +YW D   + I+  N  G +R+ I    P  
Sbjct: 152 AMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHP 210

Query: 262 NLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKP 320
             + +T +++ ++ T W  +SI R NK +  +   I  +      I ++H  +Q    + 
Sbjct: 211 --FGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNEC 268

Query: 321 ST--------------------------------FLLYAKGKPAIIKGLTFKR----DGT 344
           ++                                            +     R    +  
Sbjct: 269 ASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQ 328

Query: 345 TEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGI------ 398
           +   I+PI  L+    IDY   ++ +Y+ +    +I + +  G     V+ + +      
Sbjct: 329 SPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLE 388

Query: 399 YNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
                +++D  +  +YWT      INV ++ D     V+ KG
Sbjct: 389 IQPYDLSIDIYSRYIYWTCEATNVINVTRL-DGRSVGVVLKG 429

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  136 bits (342), Expect = 7e-35
 Identities = 55/343 (16%), Positives = 113/343 (32%), Gaps = 45/343 (13%)

Query: 1   MTFRGPNKTQCVDADECLID-GSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWE 59
           M     + ++    +EC    G C   C    +          +     +   +    + 
Sbjct: 252 MDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFL 311

Query: 60  ECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFF 119
                  I                +          ++ I  +L   R I  DP    +++
Sbjct: 312 LFSQKSAINR--------------MVIDEQQSPDIILPIH-SLRNVRAIDYDPLDKQLYW 356

Query: 120 TKWGATRPMLERSLLDGTERFPMVT--------------------HKIVY-----PEAIY 154
               + + M+ ++  DG++ F +V                      + +Y        I 
Sbjct: 357 I--DSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVIN 414

Query: 155 FCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH 214
                     + +     +PR + ++P  GYM+FT      P +ER+ LDGTER  +   
Sbjct: 415 VTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFS 474

Query: 215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLF 274
            +  P  + +D     ++W D+ L  I+  +  G +R  +     +     +TVFEN L+
Sbjct: 475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS-NILQPVGLTVFENWLY 533

Query: 275 VTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPD 316
               + Q I +++    +    +    ++   IH        +
Sbjct: 534 WIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQE 576

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  102 bits (256), Expect = 1e-23
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
           P  FLL+++     I+ ++   +       +P+T +K  S +D+   +  IY+ +++   
Sbjct: 5   PEAFLLFSRRA--DIRRISL--ETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT 60

Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
           I R  M G   E V++ G+   EGMAVDW+  NLYW D G   I V+K+ D   R+VL  
Sbjct: 61  ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVLVW 119

Query: 440 G 440
            
Sbjct: 120 K 120

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 84.1 bits (207), Expect = 1e-17
 Identities = 54/367 (14%), Positives = 118/367 (32%), Gaps = 40/367 (10%)

Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-----IVYPEAIYF 155
           N+ +  G+ +D     +++        ++E S + G  R  +         +   +   +
Sbjct: 164 NVGRANGLTIDYAKRRLYW--TDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIY 221

Query: 156 CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS------------LL 203
            T +    +   +    + R I        M    + ++R                  L 
Sbjct: 222 WTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLA 281

Query: 204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNL 263
                F                      + + +    I+R+  D      I    P+ +L
Sbjct: 282 VPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDII--LPIHSL 339

Query: 264 -----YDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPD-- 316
                 D    +  L+    R   I +    +     T+   S    +   + + QP   
Sbjct: 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQ-EDGSQGFTVVVSS----VPSQNLEIQPYDL 394

Query: 317 ALKPSTFLLY-AKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL 375
           ++   +  +Y       +I       DG +   ++   +  RP  +  + ++ Y+Y+  L
Sbjct: 395 SIDIYSRYIYWTCEATNVINVTRL--DGRSVGVVLK-GEQDRPRAVVVNPEKGYMYFTNL 451

Query: 376 --TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSI 433
              S  IER  + G  +EV+  +G+     +A+D     L+W D+ +  I  + +   + 
Sbjct: 452 QERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL-SGAN 510

Query: 434 RKVLYKG 440
           R VL   
Sbjct: 511 RIVLEDS 517

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 84.1 bits (207), Expect = 2e-17
 Identities = 56/426 (13%), Positives = 126/426 (29%), Gaps = 69/426 (16%)

Query: 21  GSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFA 80
            S +    N  +        F     + ++Y T  +            +    +      
Sbjct: 191 ESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDY 250

Query: 81  QEAIYFCTHYMEHCMIAIDLNLSKPRGIALD-PTSGYMFFTKWGATRPMLERSLLDGTER 139
              I       +        +      + L  P  G++       +     R+    T  
Sbjct: 251 VMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF 310

Query: 140 FPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLE 199
                   +    +          ++ I  +L   R I  DP    +++    + + M+ 
Sbjct: 311 LLFSQKSAIN--RMVIDEQQSPDIILPIH-SLRNVRAIDYDPLDKQLYWI--DSRQNMIR 365

Query: 200 RSLLDGTERFPMVTHKIV------YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT 253
           ++  DG++ F +V   +        PY +++D  ++++YW     + I+    DG     
Sbjct: 366 KAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGV 425

Query: 254 IRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHR 311
           + KG        + V   +  ++ T+ + +S  ++ +                       
Sbjct: 426 VLKG-EQDRPRAVVVNPEKGYMYFTNLQERSP-KIERAA--------------------- 462

Query: 312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY 371
                                         DGT  + +   + L +P  +    +   ++
Sbjct: 463 -----------------------------LDGTEREVL-FFSGLSKPIALALDSRLGKLF 492

Query: 372 YAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDF 431
           +A+     IE   + G  + V+ D+ I    G+ V    N LYW D     I    ++  
Sbjct: 493 WADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGR 550

Query: 432 SIRKVL 437
             R  +
Sbjct: 551 EGRTKV 556

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 38/253 (15%), Positives = 73/253 (28%), Gaps = 63/253 (24%)

Query: 193 ATRPMLERSLLDGTERFPMVTHK-IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR 251
           + R  + R  L+       +    +     +  D     +YW D  L  I R   +G+  
Sbjct: 12  SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71

Query: 252 KT-IRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHI 308
           +  +  G  +     + V     NL+   W +    R+     D                
Sbjct: 72  EHVVEFG--LDYPEGMAVDWLGKNLY---WADTGTNRIEVSKLD---------------- 110

Query: 309 YHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE 368
                                                 + ++   DL  P  +     E 
Sbjct: 111 -----------------------------------GQHRQVLVWKDLDSPRALALDPAEG 135

Query: 369 YIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAK 427
           ++Y+ E      I+R  M G  +  ++   +    G+ +D+    LYWTD     I  + 
Sbjct: 136 FMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194

Query: 428 ISDFSIRKVLYKG 440
           +     R+V+   
Sbjct: 195 M-LGLNREVIADD 206

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 29/175 (16%), Positives = 64/175 (36%), Gaps = 20/175 (11%)

Query: 270 ENNLFVTSWRNQSIIRVNKFNSDDYET---IANFSRPFAIHIYHRQKQPDALKPSTFLLY 326
           E  L  +  R   I R++   +++      +       A+       +         + +
Sbjct: 6   EAFLLFS--RRADIRRIS-LETNNNNVAIPLTGVKEASALDFDVTDNR---------IYW 53

Query: 327 AKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF 386
                  I       +G+  + ++    L  P  +      + +Y+A+  +  IE  K+ 
Sbjct: 54  TDISLKTISRAFM--NGSALEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD 110

Query: 387 GRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGI-GTINVAKISDFSIRKVLYKG 440
           G+ ++V++   + +   +A+D     +YWT+ G    I+ A   D S R  L   
Sbjct: 111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA-MDGSERTTLVPN 164

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score =  173 bits (441), Expect = 1e-51
 Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 25/238 (10%)

Query: 98  IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI---- 153
           + +      G+A D     +++T      P + R+ L G E   ++   +  PE I    
Sbjct: 31  LHIPAKVIIGLAFDCVDKVVYWTDISE--PSIGRASLHGGEPTTIIRQDLGSPEGIALDH 88

Query: 154 -----YFCTHYME----------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPML 198
                ++    ++             +  D  L  PRGI  DP  G +++T W    P +
Sbjct: 89  LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148

Query: 199 ERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGF 258
           E S +DGT R  +    +  P G+T D  +  + WVD      + +N     R+ + +G 
Sbjct: 149 ETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL 208

Query: 259 PVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI--ANFSRPFAIHIYHRQKQ 314
                + +T +  NL+ T W+  S+I ++   S + +T      +R + I I   Q  
Sbjct: 209 Q--YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQCP 264

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 97.6 bits (243), Expect = 3e-23
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIE 381
           T LL+A+        L       TE         K    + +   ++ +Y+ +++   I 
Sbjct: 2   THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61

Query: 382 RRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
           R  + G     +I   + + EG+A+D +   ++WTD+ +  I VAK+ D + R+VL+  
Sbjct: 62  RASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM-DGTQRRVLFDT 119

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 89.5 bits (222), Expect = 2e-20
 Identities = 42/262 (16%), Positives = 86/262 (32%), Gaps = 60/262 (22%)

Query: 167 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF 226
           + +      G+A D     +++T      P + R+ L G E   ++   +  P G+ +D 
Sbjct: 31  LHIPAKVIIGLAFDCVDKVVYWTDISE--PSIGRASLHGGEPTTIIRQDLGSPEGIALDH 88

Query: 227 PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSII 284
             + ++W D+ LD I+    DGT R+ +     + N   I       NL+ T W N+   
Sbjct: 89  LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT-GLVNPRGIVTDPVRGNLYWTDW-NRDNP 146

Query: 285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT 344
           ++   + D                                                    
Sbjct: 147 KIETSHMD---------------------------------------------------G 155

Query: 345 TEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGM 404
           T + I+   +L  P+ + +      + + +  ++  E       G+  V+  G+     +
Sbjct: 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGLQYPFAV 214

Query: 405 AVDWMANNLYWTDAGIGTINVA 426
                  NLY+TD    ++   
Sbjct: 215 TSY--GKNLYYTDWKTNSVIAM 234

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  182 bits (463), Expect = 8e-51
 Identities = 70/346 (20%), Positives = 125/346 (36%), Gaps = 59/346 (17%)

Query: 3   FRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT--DEGFSFQGVKTHLYETIEAFWEE 60
           F+   + +C D DEC    +C Q C N    Y     +        K        A+   
Sbjct: 341 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 400

Query: 61  CFGPMDIEEWDEGLSFLTF------AQEAIYFCTHYMEHCM------------------- 95
                  +   +   + +                    +                     
Sbjct: 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 460

Query: 96  ---IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEA 152
                I  ++  P G+A+D     +++T   +    +  +   G                
Sbjct: 461 SYDTVISRDIQAPDGLAVDWIHSNIYWT--DSVLGTVSVADTKGV--------------- 503

Query: 153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212
                            N SKPR I +DP  G+M++T WG T   +++  L+G + + +V
Sbjct: 504 ---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 553

Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFP-VQNLYDITVFEN 271
           T  I +P G+T+D  +  +YWVD+ L  I  I+ +G +RKTI +    + + + + VFE+
Sbjct: 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 613

Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPD 316
            +F T   N++I   N+    D   +A N   P  + ++H   QP 
Sbjct: 614 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR 659

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 73.7 bits (180), Expect = 4e-14
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG----KEVVIDT 396
                 +    I +L+    +D       IY+++L+  +I   ++         + VI  
Sbjct: 409 MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 468

Query: 397 GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
            I   +G+AVDW+ +N+YWTD+ +GT++VA       RK L++
Sbjct: 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-KGVKRKTLFR 510

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 45/283 (15%), Positives = 96/283 (33%), Gaps = 70/283 (24%)

Query: 154 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERF 209
                       ++  NL     +  +  S  ++++    ++ M+  + LD     +   
Sbjct: 406 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYD 463

Query: 210 PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF 269
            +++  I  P G+ VD+   ++YW D+ L  +   +  G  RK              T+F
Sbjct: 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--------------TLF 509

Query: 270 ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLY--A 327
             N                            S+P AI           + P    +Y   
Sbjct: 510 RENG---------------------------SKPRAI----------VVDPVHGFMYWTD 532

Query: 328 KGKPAIIK--GLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERR 383
            G PA IK  GL    +G    +++   +++ P+   +D       +Y+ +   + I   
Sbjct: 533 WGTPAKIKKGGL----NGVDIYSLV-TENIQWPNGITLDLLSGR--LYWVDSKLHSISSI 585

Query: 384 KMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA 426
            + G  ++ +++         ++    + ++WTD     I  A
Sbjct: 586 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 628

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 57.5 bits (138), Expect = 5e-09
 Identities = 31/289 (10%), Positives = 79/289 (27%), Gaps = 66/289 (22%)

Query: 156 CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK 215
              Y   C     L+       A+   +   F  +    +  L+R        +  +   
Sbjct: 369 EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR------SEYTSLIPN 422

Query: 216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLY-----DITVFE 270
           +     +  +  +  +YW D     I     D     +       +++       +    
Sbjct: 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482

Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK 330
           +N++ T       + V        +T+                                 
Sbjct: 483 SNIYWTD-SVLGTVSVADTKGVKRKTLFR------------------------------- 510

Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRG 389
                                  +  +P  I       ++Y+ +  T   I++  + G  
Sbjct: 511 ----------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548

Query: 390 KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
              ++   I    G+ +D ++  LYW D+ + +I+   ++  + + +L 
Sbjct: 549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 597

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  178 bits (451), Expect = 2e-49
 Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 34/321 (10%)

Query: 6   PNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPM 65
             K QC +  +        +   +    +           +    Y ++          +
Sbjct: 353 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV-AL 411

Query: 66  DIEEWDEGLSFLTFAQEAIYFC----THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTK 121
           D E     + +   +Q  I        H +      I  ++  P G+A+D     +++T 
Sbjct: 412 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT- 470

Query: 122 WGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDP 181
             +    +  +   G                                   SKPR I +DP
Sbjct: 471 -DSVLGTVSVADTKGV------------------------KRKTLFREQGSKPRAIVVDP 505

Query: 182 TSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFI 241
             G+M++T WG T   +++  L+G + + +VT  I +P G+T+D  +  +YWVD+ L  I
Sbjct: 506 VHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564

Query: 242 DRINYDGTDRKTIRKG-FPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-N 299
             I+ +G +RKTI +    + + + + VFE+ +F T   N++I   N+    D   +A N
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 624

Query: 300 FSRPFAIHIYHRQKQPDALKP 320
              P  + ++H+  QP  +  
Sbjct: 625 LLSPEDMVLFHQLTQPRGVNW 645

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 73.3 bits (179), Expect = 4e-14
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 307 HIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEK 366
            +    K   A+    +L +          L         +    I +L+    +D    
Sbjct: 363 QLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD------RSEYTSLIPNLRNVVALDTEVA 416

Query: 367 EEYIYYAELTSYVIERRKMFGRG----KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGT 422
              IY+++L+  +I   ++         + VI   I   +G+AVDW+ +N+YWTD+ +GT
Sbjct: 417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 476

Query: 423 INVAKISDFSIRKVLYK 439
           ++VA       RK L++
Sbjct: 477 VSVADT-KGVKRKTLFR 492

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 62/428 (14%), Positives = 128/428 (29%), Gaps = 119/428 (27%)

Query: 10  QCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQGVKTHLYETIEAFWEECFGPMDIE 68
           +C   +    +G C   C +  + Y     +GF     +             C    + +
Sbjct: 291 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR------------CEDIDECQ 338

Query: 69  EWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM 128
           + D      T +Q  +     Y   C                    G+       A + +
Sbjct: 339 DPD------TCSQLCVNLEGGYKCQCE------------------EGFQLDPHTKACKAV 374

Query: 129 LERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFF 188
              + L  T R  +                       ++  NL     +  +  S  +++
Sbjct: 375 GSIAYLFFTNRHEV------------RKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYW 422

Query: 189 TKWGATRPMLERSLLDGTERFPM----VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRI 244
           +    ++ M+  + LD           ++  I  P G+ VD+   ++YW D+ L  +   
Sbjct: 423 SDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 480

Query: 245 NYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF 304
           +  G  RK              T+F                               S+P 
Sbjct: 481 DTKGVKRK--------------TLFREQG---------------------------SKPR 499

Query: 305 AIHIYHRQKQPDALKPSTFLLY--AKGKPAIIK--GLTFKRDGTTEQAIMPITDLKRPS- 359
           AI           + P    +Y    G PA IK  GL    +G    +++   +++ P+ 
Sbjct: 500 AI----------VVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLV-TENIQWPNG 544

Query: 360 -VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA 418
             +D       +Y+ +   + I    + G  ++ +++         ++    + ++WTD 
Sbjct: 545 ITLDLLSGR--LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI 602

Query: 419 GIGTINVA 426
               I  A
Sbjct: 603 INEAIFSA 610

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 353 TDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN 411
               +P  I       ++Y+ +  T   I++  + G     ++   I    G+ +D ++ 
Sbjct: 493 EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 552

Query: 412 NLYWTDAGIGTINVAKISDFSIRKVLY 438
            LYW D+ + +I+   ++  + + +L 
Sbjct: 553 RLYWVDSKLHSISSIDVNGGNRKTILE 579

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 8/113 (7%)

Query: 329 GKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR 388
            +  I      +  G +    +   D++ P  +        IY+ +     +      G 
Sbjct: 426 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485

Query: 389 GKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS----DFSIRKVL 437
            ++ +          + VD +   +YWTD G      AKI     +      L
Sbjct: 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSL 534

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score =  160 bits (404), Expect = 2e-45
 Identities = 79/322 (24%), Positives = 137/322 (42%), Gaps = 43/322 (13%)

Query: 15  DECLIDGSCDQTCTNTHLSYT-YTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEG 73
           +EC  +G C Q CTN+  ++  + + G+  +  +     + +A   E             
Sbjct: 2   NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRR----SCKALGPEPV----------- 46

Query: 74  LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSL 133
              L   +  I     +     + +  NL     +        +F++        + R+ 
Sbjct: 47  --LLFANRIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVT--LDRILRAN 101

Query: 134 LDGTERFPMVTHKIVYPEA---------IYFCTHYME----------HCMIAIDLNLSKP 174
           L+G+    +V+  +  P           +Y+                H  + +  +L KP
Sbjct: 102 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP 161

Query: 175 RGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
           R IAL P  G +++T WG T P +E S +DG+ R  +    + +P G+T+D+  + +YWV
Sbjct: 162 RAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV 220

Query: 235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDY 294
           D     I+R N DG+ RK +     + + + ITVFE++L+ T W  +SI   NKF   + 
Sbjct: 221 DAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ 279

Query: 295 ETIA-NFSRPFAIHIYHRQKQP 315
           E I      P  IH  H Q+QP
Sbjct: 280 EIIRNKLHFPMDIHTLHPQRQP 301

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 84.5 bits (208), Expect = 4e-18
 Identities = 50/290 (17%), Positives = 97/290 (33%), Gaps = 61/290 (21%)

Query: 153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212
           I     +     + +  NL     +        +F++        + R+ L+G+    +V
Sbjct: 55  IRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVEEVV 111

Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FE 270
           +  +  P G+ VD+    +YW D+    I+  N DG  RK +     ++    I +   E
Sbjct: 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPME 170

Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK 330
             ++ T W N   I  +  +      IA+                               
Sbjct: 171 GTIYWTDWGNTPRIEASSMDGSGRRIIAD------------------------------- 199

Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK 390
                                 T L  P+ +        +Y+ +   +VIER  + G  +
Sbjct: 200 ----------------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 237

Query: 391 EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
           + VI  G+ +   + V    ++LYWTD    +IN A       ++++   
Sbjct: 238 KAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRNK 285

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 65.3 bits (158), Expect = 9e-12
 Identities = 45/275 (16%), Positives = 88/275 (32%), Gaps = 64/275 (23%)

Query: 174 PRGIALDPTSGYMFFTK-----WGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT 228
             G  L P                A R  + + L   +E + ++ + +     +      
Sbjct: 26  EAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSE-YTLLLNNLENAIALDFHHRR 84

Query: 229 KHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRV 286
           + V+W D  LD I R N +G++ + +     +++   + V    + L+ T       I V
Sbjct: 85  ELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSR-IEV 142

Query: 287 NKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE 346
              +    + +                                                 
Sbjct: 143 ANLDGAHRKVLLW----------------------------------------------- 155

Query: 347 QAIMPITDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMA 405
                   L++P  I  H  E  IY+ +   +  IE   M G G+ ++ DT ++   G+ 
Sbjct: 156 ------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT 209

Query: 406 VDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
           +D+    +YW DA    I  A +     + V+ +G
Sbjct: 210 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 244

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score =  153 bits (388), Expect = 2e-43
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 29/220 (13%)

Query: 98  IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCT 157
           I  ++  P G+A+D     +++T        +  +   G                     
Sbjct: 72  ISRDIQAPDGLAVDWIHSNIYWTDSVLGT--VSVADTKGV-------------------- 109

Query: 158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV 217
                       N SKPR I +DP  G+M++T WG T   +++  L+G + + +VT  I 
Sbjct: 110 ----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQ 164

Query: 218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFENNLFVT 276
           +P G+T+D  +  +YWVD+ L  I  I+ +G +RKTI +    + + + + VFE+ +F T
Sbjct: 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 224

Query: 277 SWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
              N++I   N+    D   +A N   P  + ++H   QP
Sbjct: 225 DIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 38/277 (13%), Positives = 87/277 (31%), Gaps = 62/277 (22%)

Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERFPMVTHKIVYPYGVTVD 225
           NL     +  +  S  ++++     + M+  + LD     +    +++  I  P G+ VD
Sbjct: 28  NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85

Query: 226 FPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSI 283
           +   ++YW D+ L  +   +  G  RKT+ +         I V      ++ T W   + 
Sbjct: 86  WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAK 144

Query: 284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDG 343
           I+    N  D  ++                                              
Sbjct: 145 IKKGGLNGVDIYSLVT-------------------------------------------- 160

Query: 344 TTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG 403
                     +++ P+ I        +Y+ +   + I    + G  ++ +++        
Sbjct: 161 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP 211

Query: 404 MAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
            ++    + ++WTD     I  A     S   +L + 
Sbjct: 212 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 248

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 11/122 (9%)

Query: 323 FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIER 382
           +L +       ++ +T   D +   ++  I +L+    +D       IY+++L+  +I  
Sbjct: 3   YLFFTNRHE--VRKMTL--DRSEYTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICS 56

Query: 383 RKMFGRGK----EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
            ++         + VI   I   +G+AVDW+ +N+YWTD+ +GT++VA       RK L+
Sbjct: 57  TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-KGVKRKTLF 115

Query: 439 KG 440
           + 
Sbjct: 116 RE 117

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 18/169 (10%)

Query: 273 LFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKPSTFLLY--AKG 329
           LF T   N+  +R    +  +Y ++  N     A+            + ++  +Y     
Sbjct: 4   LFFT---NRHEVRKMTLDRSEYTSLIPNLRNVVAL----------DTEVASNRIYWSDLS 50

Query: 330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG 389
           +  I      +  G +    +   D++ P  +        IY+ +     +      G  
Sbjct: 51  QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 110

Query: 390 KEVVIDTGIYNVEGMAVDWMANNLYWTDAGI-GTINVAKISDFSIRKVL 437
           ++ +          + VD +   +YWTD G    I    + +      L
Sbjct: 111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSL 158

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  148 bits (375), Expect = 2e-41
 Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 25/236 (10%)

Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV-THKIVYPEAI------ 153
            L     +    + G ++++        ++R+  + TE    V    ++ P+ +      
Sbjct: 33  GLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90

Query: 154 ---YFCTHYME----------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLER 200
              Y+                   +     L +PR IALDP+SG+M++T WG   P +ER
Sbjct: 91  EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIER 149

Query: 201 SLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPV 260
           + +DG+ RF ++  +I +P G+T+D+  + +YW D  L+FI + N DGT+R+ + KG  +
Sbjct: 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SL 208

Query: 261 QNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
            + + +T+FE+ L+ T W   SI+  NK+  +    I  +   P  IH + +Q+QP
Sbjct: 209 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQP 264

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 95.1 bits (236), Expect = 6e-22
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
            +  LLYA  +  +            E A + +  L+  + +D+      IY+++++   
Sbjct: 3   SAPLLLYANRR-DLRL---VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 58

Query: 380 IERRKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
           I+R +       + V+ +G+ + +G+A DW+   LYWTD+    I V+ + D S+RKVL+
Sbjct: 59  IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 117

Query: 439 KG 440
             
Sbjct: 118 WQ 119

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 83.6 bits (206), Expect = 4e-18
 Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 25/262 (9%)

Query: 185 YMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRI 244
            + +      R +      +G E   +V   +     V   F    +YW D   + I R 
Sbjct: 6   LLLYANRRDLRLV---DATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62

Query: 245 NYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIA--NF 300
            ++ T+         + +   +        L+ T      I   N  +    + +     
Sbjct: 63  EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN-LDGSLRKVLFWQEL 121

Query: 301 SRPFAIHIYHRQKQPDALKPSTFLLYA--KGKPAIIKGLTFKRDGTTEQAIMPITDLKRP 358
            +P AI          AL PS+  +Y    G+   I       DG++   I+  +++  P
Sbjct: 122 DQPRAI----------ALDPSSGFMYWTDWGEVPKI--ERAGMDGSSRFIIIN-SEIYWP 168

Query: 359 SVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA 418
           + +    +E+ +Y+A+     I +  + G  ++ V+   + +   + +    + LYWTD 
Sbjct: 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW 226

Query: 419 GIGTINVAKISDFSIRKVLYKG 440
              +I           + ++  
Sbjct: 227 STHSILACNKYTGEGLREIHSD 248

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 70.1 bits (171), Expect = 1e-13
 Identities = 25/209 (11%), Positives = 54/209 (25%), Gaps = 22/209 (10%)

Query: 101 NLSKPRGIALDPTSGYMFFTKW-GATRPMLERSLLDGTERFPMVTHKIVYPEA----IYF 155
            L     I       Y+++  +   T   L R  +DG E+  +  H +          Y+
Sbjct: 102 VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYY 161

Query: 156 CTHYMEHCMIAIDLNLSKPRGIALDPTS-------GYMFFTKWGATRPMLERSLLDGTER 208
                       D                        +++         +    ++    
Sbjct: 162 NNPKNGQLYR-YDTASQSEALFYDCNCYKPVVLDDTNVYYMDVN-RDNAIVHVNINNPNP 219

Query: 209 FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV 268
             +    I +         +   Y        +  +  DGT  K + KG       +I V
Sbjct: 220 VVLTEANIEHYNVY----GSLIFYQRGGDNPALCVVKNDGTGFKELAKG----EFCNINV 271

Query: 269 FENNLFVTSWRNQSIIRVNKFNSDDYETI 297
               ++ T + +      +  N D  + +
Sbjct: 272 TSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 34/230 (14%)

Query: 170 NLSKPRGIALDPTSGYMFFTKW-GATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT 228
            L     I       Y+++  +   T   L R  +DG E+      KI   Y  T +   
Sbjct: 102 VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-----KKIKNHYLFTCNTSD 156

Query: 229 KHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSW-RNQSIIRVN 287
           ++ Y+ +     + R +                    + + + N++     R+ +I+ VN
Sbjct: 157 RYFYYNNPKNGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVN 213

Query: 288 KFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLY--AKGKPAIIKGLTFKRDGTT 345
             N +           + ++              + + Y      PA+      K DGT 
Sbjct: 214 INNPNPVVLTEANIEHYNVY-------------GSLIFYQRGGDNPALCV---VKNDGTG 257

Query: 346 EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID 395
            + +    +    +V       +Y+Y+ +  S                + 
Sbjct: 258 FKELAK-GEFCNINVTS-----QYVYFTDFVSNKEYCTSTQNPDTIKALQ 301

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 18/192 (9%)

Query: 231 VYWVDTYLDF-IDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKF 289
           V++ +T  +  +  +N DG++   +           I   +N ++     NQ I     F
Sbjct: 28  VFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFF 83

Query: 290 NSDDYETIA-NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGL-TFKRDGTTEQ 347
           + D         +   +  +        +L    ++ Y          L   + DG  + 
Sbjct: 84  SYDRNSLCRIKRNGHGSTVLDPDPCIYASLI-GNYIYYLHYDTQTATSLYRIRIDGEEK- 141

Query: 348 AIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVD 407
                  +K   +   +  + Y YY    +  + R     + + +  D   Y    +   
Sbjct: 142 -----KKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDT 196

Query: 408 WMANNLYWTDAG 419
            +    Y+ D  
Sbjct: 197 NV----YYMDVN 204

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 48/260 (18%), Positives = 83/260 (31%), Gaps = 28/260 (10%)

Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKH 230
            + P GI +    G ++ T+  A    +    LDG      +         +T+      
Sbjct: 14  DTGPYGITVSD-KGKVWITQHKANM--ISCINLDGKITEYPLPTPDAKVMCLTIS-SDGE 69

Query: 231 VYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRNQSIIRVNKF 289
           V++ +   + I RI   G   K      P    Y IT     +++ T        R+ + 
Sbjct: 70  VWFTENAANKIGRITKKGI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGN---RIGRI 125

Query: 290 NSDD----YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTT 345
             D     YE     S P  I           L     L + + +   I  +T    G  
Sbjct: 126 TDDGKIREYELPNKGSYPSFI----------TLGSDNALWFTENQNNAIGRIT--ESGDI 173

Query: 346 EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMA 405
            +  +P T    P  I     ++ +++ E+    I R    G   E  I T       + 
Sbjct: 174 TEFKIP-TPASGPVGITKG-NDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAIT 231

Query: 406 VDWMANNLYWTDAGIGTINV 425
                 +L++T+ G   I  
Sbjct: 232 AG-AGIDLWFTEWGANKIGR 250

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 52/335 (15%), Positives = 102/335 (30%), Gaps = 64/335 (19%)

Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
            + P GI +    G ++ T+  A    +    LDG      +T                 
Sbjct: 14  DTGPYGITVSD-KGKVWITQHKANM--ISCINLDGK-----ITE---------------- 49

Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
                +    +K   + +    G ++FT+  A +  + R    G  +   + +    PYG
Sbjct: 50  ---YPLPTPDAKVMCLTISS-DGEVWFTENAANK--IGRITKKGIIKEYTLPNPDSAPYG 103

Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRN 280
           +T   P   +++ +   + I RI  DG   +             IT+  +N L+ T  +N
Sbjct: 104 ITEG-PNGDIWFTEMNGNRIGRITDDGK-IREYELPNKGSYPSFITLGSDNALWFTENQN 161

Query: 281 QSIIRVNKFNSD----DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYA-KGKPAIIK 335
                + +        +++     S P  I                 L +       I +
Sbjct: 162 N---AIGRITESGDITEFKIPTPASGPVGI----------TKGNDDALWFVEIIGNKIGR 208

Query: 336 GLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVV 393
                  G   +  +P T   RP             +++ E  +  I R       +E  
Sbjct: 209 ---ITTSGEITEFKIP-TPNARPHAITAG---AGIDLWFTEWGANKIGRLTSNNIIEEYP 261

Query: 394 IDTGIYNVEGMAVDWMANNLYWTDAG--IGTINVA 426
           I        G+  D     +++      IG + + 
Sbjct: 262 IQIKSAEPHGICFD--GETIWFAMECDKIGKLTLI 294

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 29/211 (13%)

Query: 96  IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI-- 153
             +    S P GI   P +G ++FT+    R  + R   DG  R   + +K  YP  I  
Sbjct: 92  YTLPNPDSAPYGITEGP-NGDIWFTEMNGNR--IGRITDDGKIREYELPNKGSYPSFITL 148

Query: 154 ------YFCTHYMEHCMIAIDLN-----------LSKPRGIALDPTSGYMFFTKWGATRP 196
                 +F T    + +  I  +            S P GI        ++F +    + 
Sbjct: 149 GSDNALWF-TENQNNAIGRITESGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNK- 205

Query: 197 MLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK 256
            + R    G      +      P+ +T       +++ +   + I R+  +    +    
Sbjct: 206 -IGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTSNNI-IEEYPI 262

Query: 257 GFPVQNLYDITVFENNLFVTSWRNQSIIRVN 287
                  + I      ++     ++ I ++ 
Sbjct: 263 QIKSAEPHGICFDGETIWFAMECDK-IGKLT 292

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 49/267 (18%), Positives = 91/267 (34%), Gaps = 29/267 (10%)

Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV 224
             +    +K   + +    G ++FT+ GA + + + S   G   +P+       PYG+T 
Sbjct: 55  FEVPTPDAKVMCLIVSS-LGDIWFTENGANK-IGKLSKKGGFTEYPLPQ-PDSGPYGITE 111

Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRNQSI 283
                 +++     D I ++  DGT                IT+  +N L+ T  +N SI
Sbjct: 112 G-LNGDIWFTQLNGDRIGKLTADGTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169

Query: 284 IRVNK-FNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYA-KGKPAIIKGLTFKR 341
            R+      ++Y    N + P  I                 L +       I +      
Sbjct: 170 GRITNTGKLEEYPLPTNAAAPVGI----------TSGNDGALWFVEIMGNKIGR---ITT 216

Query: 342 DGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIY 399
            G   +  +P T   RP         K   I++ E  +  I R       +E  + T   
Sbjct: 217 TGEISEYDIP-TPNARPHAITAG---KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENA 272

Query: 400 NVEGMAVDWMANNLYWTDAG-IGTINV 425
              G+       ++++     IG +N+
Sbjct: 273 EPHGITFG-KDGSVWFALKCKIGKLNL 298

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 45/263 (17%), Positives = 84/263 (31%), Gaps = 38/263 (14%)

Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT--HKIVYPYGVTVDFPT 228
            S P GI      G ++FT+  A +  +    LD + R               + V    
Sbjct: 19  DSGPYGITSSE-DGKVWFTQHKANK--ISS--LDQSGRIKEFEVPTPDAKVMCLIVS-SL 72

Query: 229 KHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVN 287
             +++ +   + I +++  G          P    Y IT   N +++ T        R+ 
Sbjct: 73  GDIWFTENGANKIGKLSKKGG-FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGD---RIG 128

Query: 288 KFNSD----DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYA-KGKPAIIKGLTFKRD 342
           K  +D    +Y+     S P  I           L     L +      +I +       
Sbjct: 129 KLTADGTIYEYDLPNKGSYPAFI----------TLGSDNALWFTENQNNSIGR---ITNT 175

Query: 343 GTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYN 400
           G  E+  +P T+   P          +  +++ E+    I R    G   E  I T    
Sbjct: 176 GKLEEYPLP-TNAAAPVGITSG---NDGALWFVEIMGNKIGRITTTGEISEYDIPTPNAR 231

Query: 401 VEGMAVDWMANNLYWTDAGIGTI 423
              +      + +++T+ G   I
Sbjct: 232 PHAITAG-KNSEIWFTEWGANQI 253

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKH 230
           L  P  +A+   SG +  T+   T  +   +   G          + +P GVTVD     
Sbjct: 76  LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVD-NKGR 133

Query: 231 VYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF-ENNLFVTSWRNQSIIRVNKF 289
           +  V+  +  +   + +G           ++    + V  +  +F++  R      V  F
Sbjct: 134 IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH---CVKVF 190

Query: 290 NSD 292
           N +
Sbjct: 191 NYE 193

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 56/268 (20%)

Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKH 230
              P G+A+D  +G ++ T  G     + +     T    +  + +  P G+ VD     
Sbjct: 23  RLSPSGVAVDS-AGNVYVTSEGMYG-RVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGT 79

Query: 231 VYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRNQSIIRVNKF 289
           VY  D     +               G        + V  +  ++V    N    RV K 
Sbjct: 80  VYVTDFNNRVVTLAAGSNNQTVLPFDGL--NYPEGLAVDTQGAVYVADRGNN---RVVKL 134

Query: 290 NSD-DYETIA---NFSRPFAI------HIY------HRQKQPDALKPSTFLLYAKGKPAI 333
            +    +T+      + P  +      ++Y      +R                     +
Sbjct: 135 AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR---------------------V 173

Query: 334 IKGLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGRGKE 391
           +K    + +    Q ++P TD+  P    +D   +   +Y  E  +  + +         
Sbjct: 174 VK---LEAESNN-QVVLPFTDITAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTTST 226

Query: 392 VVIDTGIYNVEGMAVDWMANNLYWTDAG 419
           V+  TG+     +AVD     +Y  D G
Sbjct: 227 VLPFTGLNTPLAVAVDS-DRTVYVADRG 253

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 36/229 (15%), Positives = 82/229 (35%), Gaps = 32/229 (13%)

Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI-------Y 154
              P G+A+D  +G ++ T  G     + +     T    +  + +  P+ +        
Sbjct: 23  RLSPSGVAVDS-AGNVYVTSEGMYG-RVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV 80

Query: 155 FCTHYMEHCMIAIDLN----------LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD 204
           + T +    +     +          L+ P G+A+D   G ++    G  R  + +    
Sbjct: 81  YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNR--VVKLAAG 137

Query: 205 GTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLY 264
              +  +    +  P GV VD  + +VY  DT  + + ++  +  ++  +     +   +
Sbjct: 138 SKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPW 195

Query: 265 DITVF-ENNLFVTSWRNQSIIRVNKFNSD-DYETIAN---FSRPFAIHI 308
            I V     ++VT        +V K  +     T+      + P A+ +
Sbjct: 196 GIAVDEAGTVYVTEHNTN---QVVKLLAGSTTSTVLPFTGLNTPLAVAV 241

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 27/171 (15%)

Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI-------- 153
           L+ P G+A+D   G ++    G  R  + +       +  +    +  P+ +        
Sbjct: 107 LNYPEGLAVDT-QGAVYVADRGNNR--VVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV 163

Query: 154 YFCTHYMEHCMIAIDLN-----------LSKPRGIALDPTSGYMFFTKWGATRPMLERSL 202
           Y  T    + ++ ++             ++ P GIA+D  +G ++ T+    +  + + L
Sbjct: 164 YV-TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQ--VVKLL 219

Query: 203 LDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT 253
              T    +    +  P  V VD   + VY  D   D + ++         
Sbjct: 220 AGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRGNDRVVKLTSLEHHHHH 269

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 3  FRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGF 41
          F+   + +C D DEC    +C Q C N    Y    +EGF
Sbjct: 58 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 97

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 5  GPNKTQCVDADECLID-GSCDQTCTNTHLSYT 35
                 +  +ECL + G C   C +  + Y 
Sbjct: 20 NLYFQGAMGTNECLDNNGGCSYVCNDLKIGYE 51

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 3   FRGPNKTQCVDADECLIDGSCDQTCTNTHLSYT-YTDEGFSFQG 45
           +   +   C D DEC   G C   C N   ++        +  G
Sbjct: 69  YILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAG 112

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 6  PNKTQCVDADECLIDGSCDQTCTNTHLSYT 35
               C D DEC  +  C Q C N    YT
Sbjct: 37 LKSKSCEDIDECS-ENMCAQLCVNYPGGYT 65

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 7  NKTQCVDADECLID-GSCDQTCTNTHLSYTYT-DEGFSFQGVKT 48
             +CVD DEC +     + TC N    +  T +EGF    + T
Sbjct: 37 AGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMT 80

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 11 CVDADECLIDGSC-DQTCTNTHLSYTYT-DEGFSFQG 45
           VD DEC     C    C NT  SY      G+   G
Sbjct: 2  AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAG 38

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 3/41 (7%)

Query: 6  PNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG 45
          P +  CVD      +   D      +     + + G     
Sbjct: 36 PTRVGCVDTRSG--NCYLDIRPRGDNGDTACSNEIGVGVSK 74

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 3   FRGPNKTQCVDADECLIDGSC--DQTCTNTHLSYT 35
           +     TQC D DEC +      +  C NT  S+ 
Sbjct: 96  YSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFK 130

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 2/33 (6%)

Query: 5  GPNKTQCVDADECLID--GSCDQTCTNTHLSYT 35
                C+D DEC  D        C NT  SY 
Sbjct: 37 FMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYR 69

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 1/34 (2%)

Query: 3  FRGPNKTQCVDADECLID-GSCDQTCTNTHLSYT 35
          + G    + V    C +D G C   C        
Sbjct: 43 WEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRR 76

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 2   TFRGPNKTQCVDADECLID-GSCD--QTCTNTHLSYT 35
           TF+  ++  C D DEC      CD    C NT  SY+
Sbjct: 84  TFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYS 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	100.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.98
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.97
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.96
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.95
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.9
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.89
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.88
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.88
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.87
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.86
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.85
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.84
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.73
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.68
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.67
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.66
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.66
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.64
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.64
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.62
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.6
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.6
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.6
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.58
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.57
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.55
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.54
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.53
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.48
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.47
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.47
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.47
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.46
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.46
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.45
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.42
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.41
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.39
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.38
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.37
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.33
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.33
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.33
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.32
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.32
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.32
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.31
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.31
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.29
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.29
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.27
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.26
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.24
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.21
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.19
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.18
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.16
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.14
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.14
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.13
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.12
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.06
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.06
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.05
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.02
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.93
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.91
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.85
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.83
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.78
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.77
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.74
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.68
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.67
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.66
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.66
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.64
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.64
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.61
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.53
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.5
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.48
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.47
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.47
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.47
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.46
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.43
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.39
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.36
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.34
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.31
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.3
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.29
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.26
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.23
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.21
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.16
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.15
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.15
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.11
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.11
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.1
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.08
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.08
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.04
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.96
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.87
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.86
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.84
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.82
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.81
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.8
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.8
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.78
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.75
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.75
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.72
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.72
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.71
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.71
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.71
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.66
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.65
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.65
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.62
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.58
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.57
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.54
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.54
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.5
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.49
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.49
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.46
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.38
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.34
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.33
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.31
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.28
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.27
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.26
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.25
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.25
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.24
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.22
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.21
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.2
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.17
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.15
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.13
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.1
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.08
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.96
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.95
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.89
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.89
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.89
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	96.87
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.84
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.72
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.69
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.69
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.68
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	96.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.61
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	96.58
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.54
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.54
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	96.51
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.51
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.5
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.5
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.48
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.44
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.4
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.37
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.36
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.35
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.26
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	96.26
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.22
2wph_E	59	Coagulation factor IXA light chain; serine proteas	96.18
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.17
3jro_A	753	Fusion protein of protein transport protein SEC13	96.16
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.15
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.14
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.12
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.99
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.98
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	95.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.83
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.83
3jro_A	753	Fusion protein of protein transport protein SEC13	95.82
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.71
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.63
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	95.58
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.54
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	95.37
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	94.64
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	94.62
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	94.6
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.47
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	94.36
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.31
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	94.26
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.23
1nzi_A	159	Complement C1S component; calcium, innate immunity	94.16
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.11
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.95
2bou_A	143	EGF-like module containing mucin-like hormone rece	93.86
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	93.86
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	93.76
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	93.59
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	93.4
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.3
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.25
2bou_A	143	EGF-like module containing mucin-like hormone rece	93.16
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	92.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	92.92
1aut_L	114	Activated protein C; serine proteinase, plasma cal	92.63
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	92.61
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	92.51
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	92.01
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	91.99
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	91.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	91.9
2vh0_B	134	Activated factor XA light chain; serine protease,	91.58
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	91.23
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	91.2
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	90.85
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	90.46
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	90.46
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	90.39
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	90.22
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	89.92
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	89.65
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	89.21
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	89.19
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	88.88
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	87.79
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	87.66
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	87.58
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	85.86
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	85.74
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.73
2wph_E	59	Coagulation factor IXA light chain; serine proteas	84.68
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	84.02
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	82.91
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	82.62
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	82.14
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	81.97
3ott_A	758	Two-component system sensor histidine kinase; beta	81.24
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	81.12
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	80.05

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=1.9e-61  Score=501.56  Aligned_cols=370  Identities=21%  Similarity=0.398  Sum_probs=326.5

Q ss_pred             cceeEEEEeecccceeeeEEEecCCCcee--eeee-cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeec
Q psy14258         45 GVKTHLYETIEAFWEECFGPMDIEEWDEG--LSFL-TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTK  121 (440)
Q Consensus        45 ~~~~ll~s~~~~~~~~~I~~~~l~~~~~~--~~~~-~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~  121 (440)
                      ++|||+|++++.     |+++++++....  +++. +.+  +.|||||+.+++|||+|...++|+++.++++..+.    
T Consensus         5 p~~~Ll~s~~~~-----I~~i~l~~~~~~~~~~~~~~~~--~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~----   73 (628)
T 4a0p_A            5 PEAFLLFSRRAD-----IRRISLETNNNNVAIPLTGVKE--ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH----   73 (628)
T ss_dssp             CCCEEEEEETTE-----EEEEESSCTTCEEECCCCSCSC--EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----
T ss_pred             CCcEEEEEeCCc-----EEEEECCCCCcceEEEcCCCCc--eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE----
Confidence            378999999999     999999987654  3332 455  99999999999999999999999999998876443    


Q ss_pred             cccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCC
Q psy14258        122 WGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRP  196 (440)
Q Consensus       122 ~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~  196 (440)
                            ++..++..|.| |+||.+++|||+    ++|++++++|+.+++++...+..|++||+||.+|+|||||++.. +
T Consensus        74 ------v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~-~  146 (628)
T 4a0p_A           74 ------VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK-P  146 (628)
T ss_dssp             ------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSS-C
T ss_pred             ------EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCC-C
Confidence                  24557789999 999999999999    78999999999999998888999999999999999999999854 8


Q ss_pred             cEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEE
Q psy14258        197 MLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVT  276 (440)
Q Consensus       197 ~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~t  276 (440)
                      +|+|++|||+.++.++. .+.+|+||++|+.+++|||+|...++|++++++|+.++++...  +.+|+||++++++||||
T Consensus       147 ~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~--l~~P~glav~~~~ly~t  223 (628)
T 4a0p_A          147 KIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD--LPHPFGLTQYQDYIYWT  223 (628)
T ss_dssp             EEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--CSCEEEEEEETTEEEEE
T ss_pred             EEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc--CCCceEEEEECCEEEEe
Confidence            99999999999988874 7899999999999999999999999999999999999766554  88999999999999999


Q ss_pred             ecCCCeEEEEeccCCCceEEEe-cCCCCeEEEEeccCCCCCCC-------------------------------------
Q psy14258        277 SWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDAL-------------------------------------  318 (440)
Q Consensus       277 d~~~~~i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~~-------------------------------------  318 (440)
                      ||.++.|.++++.+|+..+++. ++..|++|+++|+.+||...                                     
T Consensus       224 D~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~  303 (628)
T 4a0p_A          224 DWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRT  303 (628)
T ss_dssp             ETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSC
T ss_pred             cCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCc
Confidence            9999999999999999888665 56689999999999997543                                     


Q ss_pred             --CCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEEC
Q psy14258        319 --KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT  396 (440)
Q Consensus       319 --~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~  396 (440)
                        .++.||+++..  ..|+++.++.. ...+..+|+.++.++.+|+||+.+++|||+|...++|+|++++|+..+.++..
T Consensus       304 C~~~~~~Ll~s~~--~~i~~i~l~~~-~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~  380 (628)
T 4a0p_A          304 CSAPTTFLLFSQK--SAINRMVIDEQ-QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS  380 (628)
T ss_dssp             EECCSSEEEEEET--TEEEEECCCTT-CCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-
T ss_pred             Cccccceeeeecc--ceEEEEecccc-cCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEc
Confidence              23578999887  89999999876 34456788889999999999999999999999999999999999887766654


Q ss_pred             ------CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEeee
Q psy14258        397 ------GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK  439 (440)
Q Consensus       397 ------~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l~~  439 (440)
                            ++..|+|||+||++++|||||...++|++++++| +.+++|+.
T Consensus       381 ~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~  428 (628)
T 4a0p_A          381 SVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLK  428 (628)
T ss_dssp             -------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEE
T ss_pred             ccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEe
Confidence                  5778999999999999999999999999999999 77888765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=8.1e-62  Score=503.99  Aligned_cols=372  Identities=27%  Similarity=0.533  Sum_probs=319.1

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCc--eeeee-ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecc
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWD--EGLSF-LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKW  122 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~--~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~  122 (440)
                      .|.||+++++.     |+++++++..  .++.. .+.+  +.|||||+.+++|||+|...++|+++.+++....      
T Consensus         9 ~~~~~~~~~~~-----I~~i~~~~~~~~~~~~~~~~~~--~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~------   75 (619)
T 3s94_A            9 APLLLYANRRD-----LRLVDATNGKENATIVVGGLED--AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV------   75 (619)
T ss_dssp             -CCEEEECSSB-----EEEECCC---------CBCCSC--EEEEEEETTTTEEEEEETTTTEEEEEEC-----C------
T ss_pred             CceEEEecccc-----EEEEeCCCCcceEEEEEcCCCc--eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce------
Confidence            68999999999     9999999864  44444 3666  9999999999999999999999999999876321      


Q ss_pred             ccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCc
Q psy14258        123 GATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM  197 (440)
Q Consensus       123 ~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~  197 (440)
                         +.++..++..|.| |+||.+++|||+    ++|++++++|+.+++++...+..|++||+||.+|+|||||++.. ++
T Consensus        76 ---~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~-~~  151 (619)
T 3s94_A           76 ---QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PK  151 (619)
T ss_dssp             ---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSS-CE
T ss_pred             ---EEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCC-CE
Confidence               1235567889999 999999999999    79999999999999998888999999999999999999999865 89


Q ss_pred             EEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEe
Q psy14258        198 LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTS  277 (440)
Q Consensus       198 I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td  277 (440)
                      |+|+++||+.+++++...+.+|+||++|+.+++|||+|...++|++++++|+.++.+..+. +.+|+||++++++|||||
T Consensus       152 I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~gi~~~~~~ly~td  230 (619)
T 3s94_A          152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTD  230 (619)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSSEEEEEC
T ss_pred             EEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-CCCceEEEEeCCEEEEec
Confidence            9999999999999998889999999999999999999999999999999999988887643 889999999999999999


Q ss_pred             cCCCeEEEEeccCCCceEEEe-cCCCCeEEEEeccCCCCCCC--------------------------------------
Q psy14258        278 WRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDAL--------------------------------------  318 (440)
Q Consensus       278 ~~~~~i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~~--------------------------------------  318 (440)
                      |.+++|+++++.+|+...++. ....|++++++|+.+||...                                      
T Consensus       231 ~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~  310 (619)
T 3s94_A          231 WSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGK  310 (619)
T ss_dssp             TTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSS
T ss_pred             CCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCc
Confidence            999999999999998887654 56689999999999998432                                      


Q ss_pred             ----CCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE
Q psy14258        319 ----KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI  394 (440)
Q Consensus       319 ----~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~  394 (440)
                          .++.||+++..  +.|++++++.. ..+...+|+.++.+|.+||||+.+++|||+|...++|+|++++|+..++++
T Consensus       311 ~C~~~~~~~Ll~~~~--~~i~~i~l~~~-~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~  387 (619)
T 3s94_A          311 TCKDGATELLLLARR--TDLRRISLDTP-DFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV  387 (619)
T ss_dssp             CBCSSCSEEEEEEES--SCEEEEESSST-TCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             ccCCCCceEEEEEcc--cceEEEecCCC-ccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE
Confidence                13478999887  89999999987 455667888899999999999999999999999999999999999889998


Q ss_pred             ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEeee
Q psy14258        395 DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK  439 (440)
Q Consensus       395 ~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l~~  439 (440)
                      ..++..|+||||||++++|||||.+.++|++++++| +.+++|+.
T Consensus       388 ~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G-~~~~~l~~  431 (619)
T 3s94_A          388 TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG-TMRKILIS  431 (619)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEC
T ss_pred             ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC-CeEEEEEE
Confidence            888999999999999999999999999999999999 77888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=1.5e-51  Score=406.95  Aligned_cols=306  Identities=24%  Similarity=0.428  Sum_probs=268.1

Q ss_pred             CceecCCCCceeecccCCCCCCCCCCcccCCCceEEc-cCCeeeec----------ceeEEEEeecccceeeeEEEecCC
Q psy14258          1 MTFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG----------VKTHLYETIEAFWEECFGPMDIEE   69 (440)
Q Consensus         1 ~~~~~~~~~~C~d~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~~----------~~~ll~s~~~~~~~~~I~~~~l~~   69 (440)
                      .||++.++++|+|++||..++.|+|.|.|++++|.|. .+||.+.+          .|+|++++++.     |+++++++
T Consensus        27 ~G~~~~~~~~C~dideC~~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~~~~~ll~~~~~~-----I~~i~l~~  101 (400)
T 3p5b_L           27 DGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE-----VRKMTLDR  101 (400)
T ss_dssp             TTEEECSSSCEEECCCCSTTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCCSTTSCEEEEEETTE-----EEEECTTS
T ss_pred             CCCCcCCCCcccCchhhhccCCCCCccCCCccceeeeccccccccccccceeeccccceeEEeccce-----eEEEccCC
Confidence            3677778899999999998889999999999999999 99999764          78999999999     99999998


Q ss_pred             Cceeeee-ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcE
Q psy14258         70 WDEGLSF-LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKI  147 (440)
Q Consensus        70 ~~~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~l  147 (440)
                      ...+..+ .+..  +.|||||+.+++|||+|...++|+++.+++....      .....++...+..|.| |+||.+++|
T Consensus       102 ~~~~~~~~~~~~--~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------~~~~~~~~~~~~~p~glavD~~~~~l  173 (400)
T 3p5b_L          102 SEYTSLIPNLRN--VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------SSYDTVISRDIQAPDGLAVDWIHSNI  173 (400)
T ss_dssp             CSCEEEECSCSC--EEEEEEETTTTEEEEEETTTTEEEEEEC------------CCCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             cceeEeccccCc--ceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------CcceEEEeCCCCCcccEEEEecCCce
Confidence            8777333 3556  9999999999999999999999999998864310      0112234557889999 999999999


Q ss_pred             EEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEE
Q psy14258        148 VYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT  223 (440)
Q Consensus       148 Y~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~  223 (440)
                      ||+    ++|++++++|+.+++++...+..|++||+||..|+|||||++.. ++|+|+++||+.++.++...+.+|+||+
T Consensus       174 Y~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~-~~I~~~~~dG~~~~~~~~~~l~~P~gla  252 (400)
T 3p5b_L          174 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGIT  252 (400)
T ss_dssp             EEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS-CCEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC-CEEEEEeCCCCccEEEEECCCCceEEEE
Confidence            999    79999999999999998888999999999999999999999865 7999999999999999888899999999


Q ss_pred             EeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC-CccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEe-cCC
Q psy14258        224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFS  301 (440)
Q Consensus       224 vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~-~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~-~~~  301 (440)
                      +|+.+++|||+|...++|++++++|+.++++... ..+.+|+||+++++.|||+||.+++|+++++.+|+...++. ++.
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~  332 (400)
T 3p5b_L          253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL  332 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCS
T ss_pred             EEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCC
Confidence            9999999999999999999999999999888763 34789999999999999999999999999999998887554 667


Q ss_pred             CCeEEEEeccCCCCCCCCC
Q psy14258        302 RPFAIHIYHRQKQPDALKP  320 (440)
Q Consensus       302 ~p~~~~v~~~~~qp~~~~~  320 (440)
                      .|++++++|+.+||.+.+|
T Consensus       333 ~p~~i~v~~~~~qp~~~n~  351 (400)
T 3p5b_L          333 SPEDMVLFHNLTQPRGVNW  351 (400)
T ss_dssp             CEEEEEEESGGGSCCCCCS
T ss_pred             CCceEEEEeeccCCCCCCc
Confidence            8999999999999966543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=1.5e-49  Score=419.93  Aligned_cols=304  Identities=24%  Similarity=0.437  Sum_probs=268.1

Q ss_pred             ceecCCCCceeecccCCCCCCCCCCcccCCCceEEc-cCCeeeec----------ceeEEEEeecccceeeeEEEecCCC
Q psy14258          2 TFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG----------VKTHLYETIEAFWEECFGPMDIEEW   70 (440)
Q Consensus         2 ~~~~~~~~~C~d~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~~----------~~~ll~s~~~~~~~~~I~~~~l~~~   70 (440)
                      ||++.++++|+|++||..++.|+|.|.|++++|+|. .+||.+.+          .++|++++.+.     |+++++++.
T Consensus       340 Gy~l~~g~~C~dideC~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~~p~Ll~an~~~-----Ir~i~l~~~  414 (791)
T 3m0c_C          340 GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE-----VRKMTLDRS  414 (791)
T ss_dssp             TCEEETTTEEECCCCCSSSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEETTSCCEEEEECBSS-----EEEECTTSC
T ss_pred             CCccCCCCccccCcccCCCCCCCCeeecCCCCceeecCCCCEeCCCCceeeecccccccccccccc-----eeEeeccCC
Confidence            666667899999999998899999999999999999 99999854          68999999999     999999988


Q ss_pred             cee-eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEE
Q psy14258         71 DEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIV  148 (440)
Q Consensus        71 ~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY  148 (440)
                      .+. +...+..  +.||+||+.+++|||+|...++|+++.+++.....      ....++...+..|.| ||||++++||
T Consensus       415 ~~~~l~~~~~~--~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~P~GLAvD~~~~~LY  486 (791)
T 3m0c_C          415 EYTSLIPNLRN--VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAPDGLAVDWIHSNIY  486 (791)
T ss_dssp             CCEEEECSCSS--EEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEE
T ss_pred             cceeeecCCCc--eEEEeecccCCeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCCcceeeeeecCCcEE
Confidence            776 4334566  99999999999999999999999999998753211      122335568899999 9999999999


Q ss_pred             Ee----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEE
Q psy14258        149 YP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV  224 (440)
Q Consensus       149 ~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~v  224 (440)
                      |+    ++|++++++|+.+++++...+..|++|||||.+|+|||||++.. ++|++++|||+.+++++...+.+|+||+|
T Consensus       487 ~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~-~~I~~~~~dG~~~~~lv~~~l~~P~GLav  565 (791)
T 3m0c_C          487 WTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITL  565 (791)
T ss_dssp             EEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCC-CeEEEEecCCCceEEEEeCCCCCceEEEE
Confidence            99    79999999999999999888999999999999999999999875 69999999999999999888999999999


Q ss_pred             eCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC-CccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE-ecCCC
Q psy14258        225 DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI-ANFSR  302 (440)
Q Consensus       225 D~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~-~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~-~~~~~  302 (440)
                      |+.+++|||+|.+.++|++++++|+.++++... ..+.+|+||++++++|||+||.+++|+++++.+|+...++ ..+..
T Consensus       566 D~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~  645 (791)
T 3m0c_C          566 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS  645 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSC
T ss_pred             ecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCC
Confidence            999999999999999999999999999988763 3488999999999999999999999999999999888765 46779


Q ss_pred             CeEEEEeccCCCCCCCC
Q psy14258        303 PFAIHIYHRQKQPDALK  319 (440)
Q Consensus       303 p~~~~v~~~~~qp~~~~  319 (440)
                      |++|+++|+.+||.+.+
T Consensus       646 P~~i~v~h~~~Qp~~~N  662 (791)
T 3m0c_C          646 PEDMVLFHNLTQPRGVN  662 (791)
T ss_dssp             CCCEEEESGGGSCCCCC
T ss_pred             ceeEeeeccccCCCCCC
Confidence            99999999999997654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=2.3e-49  Score=384.57  Aligned_cols=287  Identities=27%  Similarity=0.457  Sum_probs=248.1

Q ss_pred             cccCCCCCCCCCCcccCCCceEEc-cCCeeeec----------ceeEEEEeecccceeeeEEEecCCCceeeee-ecccc
Q psy14258         14 ADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG----------VKTHLYETIEAFWEECFGPMDIEEWDEGLSF-LTFAQ   81 (440)
Q Consensus        14 ~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~~----------~~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~-~~~~~   81 (440)
                      +|||..++.|+|.|.|++++|+|. .+||.|.+          +++|+|++.+.     |+++++++...+..+ .+.. 
T Consensus         1 i~ec~~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~~~~ll~~~~~~-----I~~i~~~g~~~~~~~~~~~~-   74 (349)
T 3v64_C            1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID-----IRQVLPHRSEYTLLLNNLEN-   74 (349)
T ss_dssp             --------CCSSEECCC---CCEECCTTEEECTTSSCEEESSSCCEEEEECBSC-----EEEECTTSCCEEEEECSCSC-
T ss_pred             CcccCCCCCCcCeeecCCCCeEEECCCCccCCCCCCcccccccCceeEeecccc-----eEEEeCCCCeeEEeecCCCc-
Confidence            589998899999999999999999 99999875          68999999999     999999998777433 3555 


Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFC  156 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~  156 (440)
                       +.|+++|+.+++|||+|...++|+++.+++...+.+          +..++..|.| |+||.+++|||+    ++|.++
T Consensus        75 -~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~----------~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~  143 (349)
T 3v64_C           75 -AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV----------VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVA  143 (349)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             -eEEEEEeccccEEEEEeccCCceEEEecCCCCceEE----------EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEE
Confidence             999999999999999999999999999987654332          4457789999 999999999999    789999


Q ss_pred             ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC
Q psy14258        157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      +++|+.+++++...+..|++||+||..|+|||+|++.. ++|+|+++||+.++.++...+.+|+||++|+.+++|||+|.
T Consensus       144 ~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~-~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~  222 (349)
T 3v64_C          144 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA  222 (349)
T ss_dssp             ETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred             cCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCC-CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence            99999998888888999999999999999999999874 69999999999998888778999999999999999999999


Q ss_pred             CCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE-ecCCCCeEEEEeccCCCC
Q psy14258        237 YLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQP  315 (440)
Q Consensus       237 ~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~-~~~~~p~~~~v~~~~~qp  315 (440)
                      ..++|++++++|+.++.+.... +.+|.||+++++.|||+||.+++|.++++.+|+...++ ..+..|++++++|+.+||
T Consensus       223 ~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~qp  301 (349)
T 3v64_C          223 KHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP  301 (349)
T ss_dssp             TTTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGSC
T ss_pred             CCCEEEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccccCc
Confidence            9999999999999988877643 88999999999999999999999999999999888755 467799999999999998


Q ss_pred             CCCC
Q psy14258        316 DALK  319 (440)
Q Consensus       316 ~~~~  319 (440)
                      ...+
T Consensus       302 ~~~n  305 (349)
T 3v64_C          302 AGKN  305 (349)
T ss_dssp             CCCC
T ss_pred             cccC
Confidence            7654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-49  Score=391.66  Aligned_cols=299  Identities=27%  Similarity=0.462  Sum_probs=245.5

Q ss_pred             ceec-CCCCceeecccCCCCCCCCCCcccCCCceEEc-cCCeeeec----------ceeEEEEeecccceeeeEEEecCC
Q psy14258          2 TFRG-PNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG----------VKTHLYETIEAFWEECFGPMDIEE   69 (440)
Q Consensus         2 ~~~~-~~~~~C~d~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~~----------~~~ll~s~~~~~~~~~I~~~~l~~   69 (440)
                      ||++ +|+++|+|++||..++.|+|.|.|++++|+|. .+||.+.+          +++|++++.+.     |+++++++
T Consensus        31 G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~~~~~~l~~~~~~~-----I~~i~~~~  105 (386)
T 3v65_B           31 GYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID-----IRQVLPHR  105 (386)
T ss_dssp             ---------------------CCTTEEC-----CCEECCTTEEECTTSSCEEECSSCCEEEEECBSC-----EEEECTTS
T ss_pred             CceECCCCCccCccceeCCcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCccccceeEeecCcc-----ceeeccCC
Confidence            6775 77899999999997789999999999999999 99999754          68999999999     99999998


Q ss_pred             Cceeeee-ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcE
Q psy14258         70 WDEGLSF-LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKI  147 (440)
Q Consensus        70 ~~~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~l  147 (440)
                      ...+..+ .+..  +.|+++|+.+++|||+|...++|+++.+++...+.          ++..++..|.| |+||.+++|
T Consensus       106 ~~~~~~~~~~~~--~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~----------~~~~~~~~p~glavd~~~g~l  173 (386)
T 3v65_B          106 SEYTLLLNNLEN--AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE----------VVSTGLESPGGLAVDWVHDKL  173 (386)
T ss_dssp             CCCEEEECSCSC--EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE----------EECSSCSCCCCEEEETTTTEE
T ss_pred             CcEEEEecCCCc--cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE----------EEeCCCCCccEEEEEeCCCeE
Confidence            8776333 3555  99999999999999999999999999998765332          24467789999 999999999


Q ss_pred             EEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEE
Q psy14258        148 VYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT  223 (440)
Q Consensus       148 Y~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~  223 (440)
                      ||+    ++|.+++++|+.+++++...+..|++||+||..|+|||+|++.. ++|+|+++||+.++.++...+.+|+||+
T Consensus       174 Y~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~-~~I~r~~~dG~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC-CEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence            999    78999999999998888888999999999999999999999874 6999999999999999888899999999


Q ss_pred             EeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE-ecCCC
Q psy14258        224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI-ANFSR  302 (440)
Q Consensus       224 vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~-~~~~~  302 (440)
                      +|+.+++|||+|...++|++++++|+.++.+.... +.+|.||+++++.|||+||.+++|.++++.+|+...++ ..+..
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~  331 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHF  331 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSC
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCC
Confidence            99999999999999999999999999988877643 78999999999999999999999999999899888755 46679


Q ss_pred             CeEEEEeccCCCCCCCC
Q psy14258        303 PFAIHIYHRQKQPDALK  319 (440)
Q Consensus       303 p~~~~v~~~~~qp~~~~  319 (440)
                      |++|+++|+.+||.+.+
T Consensus       332 p~gi~v~~~~~q~~~~n  348 (386)
T 3v65_B          332 PMDIHTLHPQRQPAGKN  348 (386)
T ss_dssp             CCCEEEESGGGSCCCCC
T ss_pred             CceEEEEchhcCcCCcC
Confidence            99999999999987654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=8.9e-47  Score=391.29  Aligned_cols=285  Identities=22%  Similarity=0.406  Sum_probs=252.1

Q ss_pred             ecccCCC-CCCCCCCcccCC--CceEEc-cCCeeeec---------ceeEEEEeecccceeeeEEEecCCCcee-eeee-
Q psy14258         13 DADECLI-DGSCDQTCTNTH--LSYTYT-DEGFSFQG---------VKTHLYETIEAFWEECFGPMDIEEWDEG-LSFL-   77 (440)
Q Consensus        13 d~~~C~~-~~~Cs~~C~n~~--~~~~C~-~~g~~l~~---------~~~ll~s~~~~~~~~~I~~~~l~~~~~~-~~~~-   77 (440)
                      ..++|.. ++.|+|+|.+.+  .+|+|. +.||.|.+         +++|||+++..     |++++++....+ +.++ 
T Consensus       271 ~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~-----i~~i~l~~~~~~~~~~~~  345 (619)
T 3s94_A          271 ATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTD-----LRRISLDTPDFTDIVLQL  345 (619)
T ss_dssp             CCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSC-----EEEEESSSTTCCCEECCC
T ss_pred             ccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccc-----eEEEecCCCccceeEEec
Confidence            3588874 689999998876  479999 99998865         68999999999     999999877654 3332 


Q ss_pred             --cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----
Q psy14258         78 --TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----  150 (440)
Q Consensus        78 --~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----  150 (440)
                        +.+  +.|||||+.+++|||+|...++|+++.++|+..+.          ++..++..|.| |+||.+++|||+    
T Consensus       346 ~~l~~--~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~----------v~~~~~~~p~GlAvD~~~~~lY~tD~~~  413 (619)
T 3s94_A          346 EDIRH--AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQF----------VVTAQIAHPDGIAVDWVARNLYWTDTGT  413 (619)
T ss_dssp             SCCSS--EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----------EECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred             cccCc--cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEE----------EEECCCCCcCceEEecccCcEEEEeCCC
Confidence              455  99999999999999999999999999998865433          24567889999 999999999999    


Q ss_pred             ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCE
Q psy14258        151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKH  230 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~  230 (440)
                      ++|++++++|+.+++++...+..|++||+||.+|+|||||++.. ++|+|++|||+.++.++...+.+|+||++|+.+++
T Consensus       414 ~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~-~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~  492 (619)
T 3s94_A          414 DRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGK  492 (619)
T ss_dssp             TEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             CcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC-CEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCE
Confidence            79999999999999998888999999999999999999999875 89999999999999998888999999999999999


Q ss_pred             EEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEec
Q psy14258        231 VYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYH  310 (440)
Q Consensus       231 ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~  310 (440)
                      |||+|...++|++++++|+.++++..+. +.+|+||++++++||||||.+++|+++++.+|....+..++..|++++++|
T Consensus       493 LY~aD~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g~~~~~~~~~~~~~~i~~~~  571 (619)
T 3s94_A          493 IYWGDAKTDKIEVMNTDGTGRRVLVEDK-IPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATN  571 (619)
T ss_dssp             EEEEETTTTEEEEEESSSCCCEEEEECC-CCSSCCEEEETTEEEEECTTSSCEEEEESSSCCEEEEECSCCCEEEEEEEE
T ss_pred             EEEEECCCCEEEEEecCCCceEEEeccC-CCCcEEEEEECCEEEEeecCCCeEEEEEcCCCceEEEecCCCCCceeeecc
Confidence            9999999999999999999999887643 889999999999999999999999999999994434555777899999999


Q ss_pred             cCCCCC
Q psy14258        311 RQKQPD  316 (440)
Q Consensus       311 ~~~qp~  316 (440)
                      +..|+.
T Consensus       572 ~~~~~~  577 (619)
T 3s94_A          572 VHRVIG  577 (619)
T ss_dssp             SSCCCC
T ss_pred             cccccc
Confidence            887763

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=6.7e-47  Score=392.52  Aligned_cols=290  Identities=19%  Similarity=0.304  Sum_probs=249.6

Q ss_pred             ecccCCC-CCCCCCCcccCC-CceEEc-cCCeeeec--------ceeEEEEeecccceeeeEEEecCCCcee---eeee-
Q psy14258         13 DADECLI-DGSCDQTCTNTH-LSYTYT-DEGFSFQG--------VKTHLYETIEAFWEECFGPMDIEEWDEG---LSFL-   77 (440)
Q Consensus        13 d~~~C~~-~~~Cs~~C~n~~-~~~~C~-~~g~~l~~--------~~~ll~s~~~~~~~~~I~~~~l~~~~~~---~~~~-   77 (440)
                      ..|+|.. ++.|+|+|.+.+ ++|+|. +.||.|.+        .++|+|+++..     |+++.++.....   +++. 
T Consensus       264 ~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~-----i~~i~l~~~~~~~~~l~~~~  338 (628)
T 4a0p_A          264 GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSA-----INRMVIDEQQSPDIILPIHS  338 (628)
T ss_dssp             CCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTE-----EEEECCCTTCCCCEECCCTT
T ss_pred             cceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccce-----EEEEecccccCceEEEEehh
Confidence            5799985 689999999998 999999 99999865        68999999999     999999865432   3333 


Q ss_pred             cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ce
Q psy14258         78 TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EA  152 (440)
Q Consensus        78 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~  152 (440)
                      +.+  +.|||||+.+++|||+|...++|+++.++|+....+...    ......++..|.| |+||++++|||+    ++
T Consensus       339 ~~~--~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~----~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~  412 (628)
T 4a0p_A          339 LRN--VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS----SVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV  412 (628)
T ss_dssp             CSC--EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------CCCEEEEEEETTTTEEEEEETTTTE
T ss_pred             cCC--ceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEc----ccccccccCCcceEEeeccCCeEEEEcCCCCE
Confidence            455  999999999999999999999999999988764332000    0000125778999 999999999999    78


Q ss_pred             EEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEE
Q psy14258        153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVY  232 (440)
Q Consensus       153 I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly  232 (440)
                      |++++++|+.+++++...+..|++||+||.+|+|||||++...++|+|++|||+.++.++...+.+|+||++|+.+++||
T Consensus       413 I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LY  492 (628)
T 4a0p_A          413 INVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLF  492 (628)
T ss_dssp             EEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             EEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEE
Confidence            99999999999999888899999999999999999999987522899999999999999988899999999999999999


Q ss_pred             EEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEe-cCCCCeEEEEecc
Q psy14258        233 WVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHR  311 (440)
Q Consensus       233 ~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~  311 (440)
                      |+|...++|++++++|++++++... .+.+|+||++++++|||+||.+++|++++|.+|+....+. .+..|.++.++|.
T Consensus       493 w~D~~~~~I~~~~~dG~~r~~~~~~-~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~~~~~~~~i~~~~~  571 (628)
T 4a0p_A          493 WADSDLRRIESSDLSGANRIVLEDS-NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKE  571 (628)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECS-SCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEECCCTTEEEEEEECC
T ss_pred             EEeCCCCEEEEEeCCCCceEEEEcC-CCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEeccCCCCcceEEEee
Confidence            9999999999999999999998864 3889999999999999999999999999999998887554 5778999999987


Q ss_pred             CCC
Q psy14258        312 QKQ  314 (440)
Q Consensus       312 ~~q  314 (440)
                      ..|
T Consensus       572 ~~~  574 (628)
T 4a0p_A          572 LNL  574 (628)
T ss_dssp             CCH
T ss_pred             ccc
Confidence            654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=2.2e-45  Score=386.47  Aligned_cols=304  Identities=23%  Similarity=0.437  Sum_probs=261.9

Q ss_pred             ceecCCCCceeecccCCCCCCCCCCcccCCCceEEc-cCCeeeec----------ceeEEEEeecccceeeeEEEecCCC
Q psy14258          2 TFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG----------VKTHLYETIEAFWEECFGPMDIEEW   70 (440)
Q Consensus         2 ~~~~~~~~~C~d~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~~----------~~~ll~s~~~~~~~~~I~~~~l~~~   70 (440)
                      ||++.++++|+|++||..++.|+|.|.|++++|+|. .+||.+.+          .++||+++.+.     |+++++++.
T Consensus       322 G~~~~~~~~C~dideC~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~-----I~~id~~~~  396 (699)
T 1n7d_A          322 GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE-----VRKMTLDRS  396 (699)
T ss_dssp             SSCCCSSSCCCCCCCCSSSSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC------CEECTTSC
T ss_pred             CeEcCCCCcccCccccCCCCccccccccCCCCeeeeeecccccCCCCCcccccccceeEEecCccc-----eEEEeCCCC
Confidence            677677899999999998889999999999999999 99999854          68899999999     999999988


Q ss_pred             ceeeee-ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEE
Q psy14258         71 DEGLSF-LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIV  148 (440)
Q Consensus        71 ~~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY  148 (440)
                      .+...+ .+..  +.||+||+.+++|||+|...++|+++.+++....      ......+..++..|.+ ||||.+++||
T Consensus       397 ~~~~~~~~~~~--p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------~~~~~~i~~~~~~P~glavD~~~g~LY  468 (699)
T 1n7d_A          397 EYTSLIPNLRN--VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------SSYDTVISRDIQAPDGLAVDWIHSNIY  468 (699)
T ss_dssp             CEECCSCCCTT--CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------CCCCCBCCSCC--CCCEECCCSSSBCE
T ss_pred             cceeeeccCcc--eEEEccccccCeEEEEecCCCeEEEEecCCCCCC------cceEEEEeCCCCCcceEEEEeeCCcEE
Confidence            776333 3555  9999999999999999999999999998862110      0111223456788999 9999999999


Q ss_pred             Ee----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEE
Q psy14258        149 YP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV  224 (440)
Q Consensus       149 ~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~v  224 (440)
                      |+    ++|.+++++|..+++++...+..|++||+||..|+|||+|++.. ++|+++++||+.+++++...+.+|+||++
T Consensus       469 ~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~-~~I~~~~~dG~~~~~l~~~~l~~PnGlav  547 (699)
T 1n7d_A          469 WTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITL  547 (699)
T ss_dssp             ECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSS-CCEEBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred             EEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCC-CeEEEEeCCCCCeeEEEeCCCCCccEEEE
Confidence            99    78999999999988888878899999999999999999998764 69999999999998888778999999999


Q ss_pred             eCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEe-cCCC
Q psy14258        225 DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSR  302 (440)
Q Consensus       225 D~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~-~~~~  302 (440)
                      |+.+++|||+|...++|++++++|++++++.. ...+.+|.||+++++.|||+||.+++|.++++.+|+...++. ++.+
T Consensus       548 d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~  627 (699)
T 1n7d_A          548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS  627 (699)
T ss_dssp             CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSS
T ss_pred             eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCC
Confidence            99999999999999999999999999988876 234789999999999999999999999999999888877554 5668


Q ss_pred             CeEEEEeccCCCCCCCC
Q psy14258        303 PFAIHIYHRQKQPDALK  319 (440)
Q Consensus       303 p~~~~v~~~~~qp~~~~  319 (440)
                      |++|+++|+.+||...+
T Consensus       628 P~~i~v~~~~~qp~~~n  644 (699)
T 1n7d_A          628 PEDMVLFHQLTQPRGVN  644 (699)
T ss_dssp             CCCCCBCSSSSSCCSCC
T ss_pred             CcEEEEeCcccCCCCCC
Confidence            99999999999997543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=100.00  E-value=7.6e-42  Score=326.89  Aligned_cols=255  Identities=26%  Similarity=0.489  Sum_probs=226.0

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCc--eeeee-ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecc
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWD--EGLSF-LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKW  122 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~--~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~  122 (440)
                      +|+|||++++.     |+++++++..  .++.+ .+.+  ++|+|+|+.+++|||+|...++|+++.+++.....     
T Consensus         4 ~p~ll~~~~~~-----I~~i~l~~~~~~~~~~~~~~~~--~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-----   71 (318)
T 3sov_A            4 APLLLYANRRD-----LRLVDATNGKENATIVVGGLED--AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-----   71 (318)
T ss_dssp             CCEEEEECEEE-----EEEEETTCTTSCCEEEEEEEEE--EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-----
T ss_pred             ccEEEEEccCe-----EEEEECCCCceEEEEEecCCCc--cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-----
Confidence            78999999999     9999999875  33333 3555  99999999999999999999999999988764211     


Q ss_pred             ccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCc
Q psy14258        123 GATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM  197 (440)
Q Consensus       123 ~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~  197 (440)
                          .++..++..|.| |+||.+++|||+    ++|++++++|+.+++++...+..|++||+||..|+|||+|++.. ++
T Consensus        72 ----~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~-~~  146 (318)
T 3sov_A           72 ----NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PK  146 (318)
T ss_dssp             ----EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSS-CE
T ss_pred             ----EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC-CE
Confidence                224567889999 999999999999    79999999999998888788999999999999999999998754 79


Q ss_pred             EEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEe
Q psy14258        198 LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTS  277 (440)
Q Consensus       198 I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td  277 (440)
                      |+|+++||+.++.++...+.+|+||++|+.+++|||+|...++|++++++|++++++..+. +.+|+||+++++.+||+|
T Consensus       147 I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~glav~~~~lywtd  225 (318)
T 3sov_A          147 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTD  225 (318)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CSCEEEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CCCceEEEEeCCEEEEEe
Confidence            9999999999998888889999999999999999999999999999999999999888743 889999999999999999


Q ss_pred             cCCCeEEEEeccCCCceEEE-ecCCCCeEEEEeccCCCCCCC
Q psy14258        278 WRNQSIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDAL  318 (440)
Q Consensus       278 ~~~~~i~~~~~~~g~~~~~~-~~~~~p~~~~v~~~~~qp~~~  318 (440)
                      |.+++|.++++.+|+....+ .+...|++++++|+.+||...
T Consensus       226 ~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~q~~~~  267 (318)
T 3sov_A          226 WSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT  267 (318)
T ss_dssp             TTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGGGSCCCC
T ss_pred             cCCCeEEEEECCCCCceEEEeCCCCCCcEEEEeccccccccc
Confidence            99999999999988887654 466799999999999998654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=100.00  E-value=3.1e-40  Score=316.13  Aligned_cols=259  Identities=22%  Similarity=0.403  Sum_probs=222.0

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCceeeee-ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecccc
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEGLSF-LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA  124 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~  124 (440)
                      +|+|||++++.     |+++++++......+ .+..  +.|+++|+.+++|||+|...++|+++.+++....      ..
T Consensus         1 ~~~ll~~~~~~-----I~~i~~~~~~~~~~~~~~~~--p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~------~~   67 (316)
T 1ijq_A            1 IAYLFFTNRHE-----VRKMTLDRSEYTSLIPNLRN--VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------SS   67 (316)
T ss_dssp             CCEEEEECBSS-----EEEEETTSCCCEEEECSCSS--EEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred             CCEEEEECCCe-----EEEEECCCcceEehhcCCCc--eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC------cc
Confidence            58999999999     999999988766333 3555  9999999999999999999999999998862100      00


Q ss_pred             ccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEE
Q psy14258        125 TRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLE  199 (440)
Q Consensus       125 ~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~  199 (440)
                      ....+..++..|.+ |+||.+++|||+    ++|.+++++|+.+++++...+..|++|++||..|+|||+|++.. ++|+
T Consensus        68 ~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~-~~I~  146 (316)
T 1ijq_A           68 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIK  146 (316)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEE
T ss_pred             cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC-CeEE
Confidence            11123456789999 999999999999    78999999999988888778899999999999999999999753 6999


Q ss_pred             EEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC-CccCceeeeeEecCEEEEEec
Q psy14258        200 RSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFENNLFVTSW  278 (440)
Q Consensus       200 r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~-~~~~~p~gl~~~~~~ly~td~  278 (440)
                      ++++||+.++.++...+.+|+||++|+.+++|||+|...++|++++++|++++++... ..+.+|.||+++++.|||+||
T Consensus       147 ~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~  226 (316)
T 1ijq_A          147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI  226 (316)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET
T ss_pred             EEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEEC
Confidence            9999999998888778899999999999999999999999999999999999888762 347899999999999999999


Q ss_pred             CCCeEEEEeccCCCceEEE-ecCCCCeEEEEeccCCCCCCC
Q psy14258        279 RNQSIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDAL  318 (440)
Q Consensus       279 ~~~~i~~~~~~~g~~~~~~-~~~~~p~~~~v~~~~~qp~~~  318 (440)
                      .+++|.++++.+|+..+++ .++..|.+|+++|+.+||...
T Consensus       227 ~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~  267 (316)
T 1ijq_A          227 INEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV  267 (316)
T ss_dssp             TTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCC
T ss_pred             CCCeEEEEeCCCCcceEEEecCCCCceEEEEeccccCCccc
Confidence            9999999999999887755 456789999999999998543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=1.4e-33  Score=277.21  Aligned_cols=325  Identities=15%  Similarity=0.210  Sum_probs=211.6

Q ss_pred             eecccCCC-CCCCCCCcccCCCceEEc-cCCeeeecceeEEEEeeccc------ceeeeEEEecCCC-cee----eeeec
Q psy14258         12 VDADECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQGVKTHLYETIEAF------WEECFGPMDIEEW-DEG----LSFLT   78 (440)
Q Consensus        12 ~d~~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~~~~ll~s~~~~~------~~~~I~~~~l~~~-~~~----~~~~~   78 (440)
                      .|+|||.. ++.|+|.|.+..++|.|. ++||.|.++.... .+.++|      -..+   ++..|. .-.    ..+..
T Consensus         1 ~~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~~C---~~~~g~~~C~C~~g~~l~~   76 (386)
T 3v65_B            1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC-QDVNECAEEGYCSQGC---TNSEGAFQCWCEAGYELRP   76 (386)
T ss_dssp             ----------------------------------------------------CCTTEE---C-----CCEECCTTEEECT
T ss_pred             CCcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCcc-CccceeCCcCcccCcC---CCCCCCCeEEECCCceEcC
Confidence            36899974 678999999999999999 9999975422222 111111      0001   111111 000    11111


Q ss_pred             ccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceE
Q psy14258         79 FAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAI  153 (440)
Q Consensus        79 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I  153 (440)
                      ....-.+  .+. ...|++++.  +.|+++.+++.....           +...+..|.+ |+|+..+.|||+    ++|
T Consensus        77 d~~~C~~--~~~-~~~l~~~~~--~~I~~i~~~~~~~~~-----------~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I  140 (386)
T 3v65_B           77 DRRSCKA--LGP-EPVLLFANR--IDIRQVLPHRSEYTL-----------LLNNLENAIALDFHHRRELVFWSDVTLDRI  140 (386)
T ss_dssp             TSSCEEE--CSS-CCEEEEECB--SCEEEECTTSCCCEE-----------EECSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCeECC--ccc-cceeEeecC--ccceeeccCCCcEEE-----------EecCCCccEEEEEecCCCeEEEEeCCCCcE
Confidence            1111222  233 567888876  578888887654322           3467889999 999999999999    799


Q ss_pred             EEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEE
Q psy14258        154 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYW  233 (440)
Q Consensus       154 ~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~  233 (440)
                      .+.+++|+..+.++...+..|.|||+|+..|.|||+|...  .+|++++++|+.++.++...+..|+||++|+.+++|||
T Consensus       141 ~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~--~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~  218 (386)
T 3v65_B          141 LRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT--SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW  218 (386)
T ss_dssp             EEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTT--TEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCC--CeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEE
Confidence            9999999988888888889999999999999999999987  59999999999999888888899999999999999999


Q ss_pred             EeCCC-CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEec
Q psy14258        234 VDTYL-DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYH  310 (440)
Q Consensus       234 ~d~~~-~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~  310 (440)
                      +|... ++|++++++|+.++.+... .+..|.||+++  +++|||+|+.++.|.+++.. |.....              
T Consensus       219 td~~~~~~I~r~~~dG~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~--------------  282 (386)
T 3v65_B          219 TDWGNTPRIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD-GSHRKA--------------  282 (386)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT-SCSCEE--------------
T ss_pred             eccCCCCEEEEEeCCCCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC-CCeeEE--------------
Confidence            99988 8999999999999888763 27899999997  66999999998888888763 211110              


Q ss_pred             cCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEe-cCCCC
Q psy14258        311 RQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRK-MFGRG  389 (440)
Q Consensus       311 ~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~-~~g~~  389 (440)
                                                             +...++..|.||+++  ++.|||+|...++|.|++ .+|..
T Consensus       283 ---------------------------------------~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          283 ---------------------------------------VISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             ---------------------------------------EECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             ---------------------------------------EEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcc
Confidence                                                   001124579999995  578999999999999999 68877


Q ss_pred             eEEEEECCCCCeeeEEEecCCCcEEEE
Q psy14258        390 KEVVIDTGIYNVEGMAVDWMANNLYWT  416 (440)
Q Consensus       390 ~~~~~~~~~~~~~glAvD~~~~~lYwt  416 (440)
                      .+++. .++..|.||+++...+..+.+
T Consensus       322 ~~~i~-~~~~~p~gi~v~~~~~q~~~~  347 (386)
T 3v65_B          322 QEIIR-NKLHFPMDIHTLHPQRQPAGK  347 (386)
T ss_dssp             CEEEE-CSCSCCCCEEEESGGGSCCCC
T ss_pred             eEEEc-cCCCCCceEEEEchhcCcCCc
Confidence            76665 578899999998655544443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=8e-32  Score=265.81  Aligned_cols=324  Identities=15%  Similarity=0.212  Sum_probs=232.9

Q ss_pred             ccCCC-CCCCCCCcccCCCceEEc-cCCeeeecceeEEEEeecccceeee---EEEecCCC-cee----eeeecccceEE
Q psy14258         15 DECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQGVKTHLYETIEAFWEECF---GPMDIEEW-DEG----LSFLTFAQEAI   84 (440)
Q Consensus        15 ~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~~~~ll~s~~~~~~~~~I---~~~~l~~~-~~~----~~~~~~~~~~~   84 (440)
                      |||.. +..|++.|.|++++|.|. ++||.+.+. ...- +.++|.....   .=++..|. .-.    .........-.
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~-~~C~-dideC~~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~   78 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCE-DIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK   78 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEECSS-SCEE-ECCCCSTTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCC
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCcCCC-Cccc-CchhhhccCCCCCccCCCccceeeecccccccccccccee
Confidence            58874 568999999999999999 999987321 1110 1111110000   00011111 000    11110000011


Q ss_pred             EEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecC
Q psy14258         85 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHY  159 (440)
Q Consensus        85 ~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~d  159 (440)
                      +  .+ ....|++++.  +.|+++.+++.....           +...+..|.+ |+|+..+.|||+    ++|.+.+++
T Consensus        79 ~--~~-~~~~ll~~~~--~~I~~i~l~~~~~~~-----------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~  142 (400)
T 3p5b_L           79 A--VG-SIAYLFFTNR--HEVRKMTLDRSEYTS-----------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD  142 (400)
T ss_dssp             C--ST-TSCEEEEEET--TEEEEECTTSCSCEE-----------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred             e--cc-ccceeEEecc--ceeEEEccCCcceeE-----------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcc
Confidence            1  11 2356888876  678888887654322           3467889999 999999999999    789999999


Q ss_pred             C----ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEe
Q psy14258        160 M----EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       160 g----~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d  235 (440)
                      |    ...+.++...+..|.|||+|+..+.|||+|...  .+|++++++|..++.++...+..|.||++|+.+++|||+|
T Consensus       143 g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          143 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             -----CCCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEE
T ss_pred             cCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCC--CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEe
Confidence            8    446677777889999999999999999999887  5999999999999999888889999999999999999999


Q ss_pred             CCC-CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccC
Q psy14258        236 TYL-DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQ  312 (440)
Q Consensus       236 ~~~-~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~  312 (440)
                      .+. .+|++++++|+.++.+... .+..|.||+++  ++.|||+|...+.|.+++.. |....++.              
T Consensus       221 ~~~~~~I~~~~~dG~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~--------------  284 (400)
T 3p5b_L          221 WGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTIL--------------  284 (400)
T ss_dssp             CSSSCCEEEEETTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEE--------------
T ss_pred             CCCCCEEEEEeCCCCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEE--------------
Confidence            874 7999999999999888764 27899999998  56999999999999888864 22211100              


Q ss_pred             CCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEe-cCCCCeE
Q psy14258        313 KQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRK-MFGRGKE  391 (440)
Q Consensus       313 ~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~-~~g~~~~  391 (440)
                                               .  ..          ..+..|.||+++  ++.|||+|...++|++++ .+|...+
T Consensus       285 -------------------------~--~~----------~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          285 -------------------------E--DE----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             -------------------------E--CS----------STTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             -------------------------e--CC----------CCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceE
Confidence                                     0  00          124578999985  679999999999999998 6787776


Q ss_pred             EEEECCCCCeeeEEEecCCCcEE
Q psy14258        392 VVIDTGIYNVEGMAVDWMANNLY  414 (440)
Q Consensus       392 ~~~~~~~~~~~glAvD~~~~~lY  414 (440)
                      ++. .++..|.+|++--..+..+
T Consensus       326 ~i~-~~~~~p~~i~v~~~~~qp~  347 (400)
T 3p5b_L          326 LLA-ENLLSPEDMVLFHNLTQPR  347 (400)
T ss_dssp             EEE-CSCSCEEEEEEESGGGSCC
T ss_pred             EEe-cCCCCCceEEEEeeccCCC
Confidence            664 5788899999864333333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=100.00  E-value=3.7e-31  Score=246.76  Aligned_cols=247  Identities=20%  Similarity=0.338  Sum_probs=208.0

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCcee-------eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcce
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEG-------LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMF  118 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~-------~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~  118 (440)
                      .|+|+|++.+.     |+++++++....       +..+...  +.++++|+.+++|||+|...++|+++++++..... 
T Consensus         1 ~~~l~~~~~~~-----I~~~~~~g~~~~~~~~~~~~~~~~~~--~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-   72 (267)
T 1npe_A            1 GTHLLFAQTGK-----IERLPLERNTMKKTEAKAFLHIPAKV--IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-   72 (267)
T ss_dssp             CEEEEEEEEEE-----EEEEEESSSCBCGGGCEEEEEEEEEE--EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-
T ss_pred             CcEEEEEcCCe-----EEEEEecCcccccccceeeecCCCCc--EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-
Confidence            37899999989     999999987643       2223333  89999999999999999999999999988754322 


Q ss_pred             eeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC
Q psy14258        119 FTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA  193 (440)
Q Consensus       119 ~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~  193 (440)
                               .+..++..|.+ |+|+.+++|||+    ++|.+++++|+..++++...+..|.+|++||..|+|||+++..
T Consensus        73 ---------~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~  143 (267)
T 1npe_A           73 ---------IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR  143 (267)
T ss_dssp             ---------EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             ---------EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence                     13345679999 999999999999    7899999999888777776778999999999889999999873


Q ss_pred             CCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEE
Q psy14258        194 TRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNL  273 (440)
Q Consensus       194 ~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~l  273 (440)
                      ..++|+++++||..++.+....+..|+||++|+.+++|||+|...++|.+++++|..+..+..+  +.+|.||+++++.|
T Consensus       144 ~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~~P~gi~~d~~~l  221 (267)
T 1npe_A          144 DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNL  221 (267)
T ss_dssp             SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--CCSEEEEEEETTEE
T ss_pred             CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC--CCCceEEEEeCCEE
Confidence            2269999999999888777667889999999988999999999999999999999877666654  67999999999999


Q ss_pred             EEEecCCCeEEEEeccCCCceEEEec--CCCCeEEEEecc
Q psy14258        274 FVTSWRNQSIIRVNKFNSDDYETIAN--FSRPFAIHIYHR  311 (440)
Q Consensus       274 y~td~~~~~i~~~~~~~g~~~~~~~~--~~~p~~~~v~~~  311 (440)
                      ||+++.+++|.++++.+|+....+..  ...|.++.+..+
T Consensus       222 yva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          222 YYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            99999999999999988887776643  336899987743

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=2.7e-31  Score=280.66  Aligned_cols=324  Identities=15%  Similarity=0.207  Sum_probs=231.7

Q ss_pred             cccCCC-CCCCCCCcccCCCceEEc-cCCeeeecceeEEEEeecccceeee---EEEecCCCcee------eeeecccce
Q psy14258         14 ADECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQGVKTHLYETIEAFWEECF---GPMDIEEWDEG------LSFLTFAQE   82 (440)
Q Consensus        14 ~~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~~~~ll~s~~~~~~~~~I---~~~~l~~~~~~------~~~~~~~~~   82 (440)
                      ++||.. ++.|+|.|.+++++|.|. ++||.+.+. .... +.+++-....   .=++..|. +.      ..+....  
T Consensus       312 ~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l~~g-~~C~-dideC~~~~~C~~~C~n~~gs-y~C~C~~Gy~l~~~~--  386 (791)
T 3m0c_C          312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCE-DIDECQDPDTCSQLCVNLEGG-YKCQCEEGFQLDPHT--  386 (791)
T ss_dssp             CCSTTTGGGGCSSEEEECSBSEEEECCTTCEEETT-TEEE-CCCCCSSSSSCTTTCCBCSSC-BCCCCCSSEECCSSC--
T ss_pred             cccccccccCccccccCCCCCcccCCCCCCccCCC-Cccc-cCcccCCCCCCCCeeecCCCC-ceeecCCCCEeCCCC--
Confidence            577874 568999999999999999 999987321 1111 1111000000   00111111 11      1111011  


Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEe
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCT  157 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~  157 (440)
                      -.-.+++. ...|++++.  +.|+++.+++.....           +...+..|.+ |+|+..++|||+    ++|++.+
T Consensus       387 ~~C~~~~~-~p~Ll~an~--~~Ir~i~l~~~~~~~-----------l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~  452 (791)
T 3m0c_C          387 KACKAVGS-IAYLFFTNR--HEVRKMTLDRSEYTS-----------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ  452 (791)
T ss_dssp             CCCEETTS-CCEEEEECB--SSEEEECTTSCCCEE-----------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ceeeeccc-ccccccccc--cceeEeeccCCccee-----------eecCCCceEEEeecccCCeeEEeeccceeEEEEe
Confidence            11122332 346777766  568787777554322           3467889999 999999999999    7899999


Q ss_pred             cCCc----eEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEE
Q psy14258        158 HYME----HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYW  233 (440)
Q Consensus       158 ~dg~----~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~  233 (440)
                      ++|.    ..++++...+..|.|||||+..+.|||+|...  .+|++++++|..+++++...+..|.||+||+..++|||
T Consensus       453 l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~--~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYw  530 (791)
T 3m0c_C          453 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW  530 (791)
T ss_dssp             C--------CEEEECSSCSCCCEEEEETTTTEEEEEETTT--TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred             ccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCC--CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEE
Confidence            9984    44667777899999999999999999999887  59999999999999999888999999999999999999


Q ss_pred             EeCCC-CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEec
Q psy14258        234 VDTYL-DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYH  310 (440)
Q Consensus       234 ~d~~~-~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~  310 (440)
                      +|.+. .+|++++++|+.++++.... +..|.||+++  +++|||+|+..+.|.+++.. |..+.++.            
T Consensus       531 tD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v~------------  596 (791)
T 3m0c_C          531 TDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTIL------------  596 (791)
T ss_dssp             EECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE------------
T ss_pred             ecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecC-CCceEEEe------------
Confidence            99876 89999999999998887743 8899999998  66999999998899888864 32221110            


Q ss_pred             cCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEe-cCCCC
Q psy14258        311 RQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRK-MFGRG  389 (440)
Q Consensus       311 ~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~-~~g~~  389 (440)
                                                 .  ..          ..+..|.+|+++  +++|||+|...++|++++ .+|..
T Consensus       597 ---------------------------~--~~----------~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          597 ---------------------------E--DE----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             ---------------------------E--CT----------TTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             ---------------------------c--CC----------CccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcc
Confidence                                       0  00          124578888885  579999999999999998 56767


Q ss_pred             eEEEEECCCCCeeeEEEecCCCcEE
Q psy14258        390 KEVVIDTGIYNVEGMAVDWMANNLY  414 (440)
Q Consensus       390 ~~~~~~~~~~~~~glAvD~~~~~lY  414 (440)
                      ++++. .++..|.+|+|.-..+..+
T Consensus       636 ~~~l~-~~l~~P~~i~v~h~~~Qp~  659 (791)
T 3m0c_C          636 VNLLA-ENLLSPEDMVLFHNLTQPR  659 (791)
T ss_dssp             CEEEE-CSCSCCCCEEEESGGGSCC
T ss_pred             eEEee-cCCCCceeEeeeccccCCC
Confidence            76664 5788999999874333333

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-30  Score=252.90  Aligned_cols=238  Identities=21%  Similarity=0.326  Sum_probs=200.0

Q ss_pred             eeeecCCcEEEe--ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc
Q psy14258        139 RFPMVTHKIVYP--EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI  216 (440)
Q Consensus       139 avD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~  216 (440)
                      +.+. ...|+++  ..|.+.+++|...+.++. .+..|.+|++|+..+.|||+|...  .+|.|++++|+..+.++...+
T Consensus        40 ~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~--~~I~r~~~~g~~~~~~~~~~~  115 (349)
T 3v64_C           40 ALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTL--DRILRANLNGSNVEEVVSTGL  115 (349)
T ss_dssp             ESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSC
T ss_pred             cccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccC--CceEEEecCCCCceEEEeCCC
Confidence            4444 4568888  789999999987766654 778899999999999999999886  599999999999888887788


Q ss_pred             cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCC-CeEEEEeccCCCc
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRN-QSIIRVNKFNSDD  293 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~-~~i~~~~~~~g~~  293 (440)
                      ..|.||++|+.+++|||+|...++|++++++|..++.+.... +..|.+|+++  ++.|||+|+.. ++|++++..    
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~-l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d----  190 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD----  190 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT-CSCEEEEEEETTTTEEEEEECSSSCEEEEEETT----
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC-CCCcceEEEecCcCeEEEeccCCCCEEEEEeCC----
Confidence            899999999999999999999999999999999988877642 7899999999  56999999876 666665542    


Q ss_pred             eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEE
Q psy14258        294 YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       294 ~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~  373 (440)
                                                                     +. ..  ..+...++..|.||++|+.+++|||+
T Consensus       191 -----------------------------------------------G~-~~--~~~~~~~~~~PnGla~d~~~~~lY~a  220 (349)
T 3v64_C          191 -----------------------------------------------GS-GR--RIIADTHLFWPNGLTIDYAGRRMYWV  220 (349)
T ss_dssp             -----------------------------------------------SC-SC--EESCCSSCSCEEEEEEETTTTEEEEE
T ss_pred             -----------------------------------------------CC-Cc--EEEEECCCCCcceEEEeCCCCEEEEE
Confidence                                                           22 00  00111245679999999999999999


Q ss_pred             ECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEE-eCCCeeeEEee
Q psy14258        374 ELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAK-ISDFSIRKVLY  438 (440)
Q Consensus       374 d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~-~~g~~~~~~l~  438 (440)
                      |...++|++++++|+.+++++..++..|.|||++  +++|||||.++++|.+++ .+| +.+++|.
T Consensus       221 D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G-~~~~~i~  283 (349)
T 3v64_C          221 DAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTG-KNQEIIR  283 (349)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC-CSCEEEE
T ss_pred             ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCC-CccEEec
Confidence            9999999999999999888888788999999997  789999999999999998 788 5566554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.98  E-value=1e-29  Score=242.76  Aligned_cols=232  Identities=17%  Similarity=0.307  Sum_probs=190.5

Q ss_pred             cEEEe--ceEEEEecCCce--EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc-eeEEecCccCce
Q psy14258        146 KIVYP--EAIYFCTHYMEH--CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER-FPMVTHKIVYPY  220 (440)
Q Consensus       146 ~lY~~--~~I~~~~~dg~~--~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~-~~l~~~~~~~P~  220 (440)
                      .|+++  ..|.+.++++..  ...++ .++..|.+|+.|+..+.|||+|...  .+|.|++++|+.. +.++...+..|.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~--~~I~r~~~~g~~~~~~~~~~~l~~p~   82 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSE--EAIKRTEFNKTESVQNVVVSGLLSPD   82 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTT--TEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCC--CcEEEEEccCCCceEEEEcCCCCCcc
Confidence            37777  789999999974  33333 3677899999999999999999886  5999999999864 456666788999


Q ss_pred             EEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecC-CCeEEEEeccCCCceEEE
Q psy14258        221 GVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWR-NQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       221 gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~-~~~i~~~~~~~g~~~~~~  297 (440)
                      ||++|..+++|||+|...++|++++++|..++++... .+..|.||+++  ++.|||+||. .++|++++.         
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~---------  152 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM---------  152 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET---------
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc---------
Confidence            9999999999999999999999999999998888753 27899999998  4699999985 455555554         


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS  377 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~  377 (440)
                                                                +|. ..  ..+.-.++..|.||++|+.++.|||+|...
T Consensus       153 ------------------------------------------dG~-~~--~~~~~~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          153 ------------------------------------------DGS-SR--FIIINSEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             ------------------------------------------TSC-SC--EEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ------------------------------------------CCC-Ce--EEEEECCCCCccEEEEeccCCEEEEEECCC
Confidence                                                      332 00  011112456799999999999999999999


Q ss_pred             CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe-CCCeeeEEee
Q psy14258        378 YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI-SDFSIRKVLY  438 (440)
Q Consensus       378 ~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~-~g~~~~~~l~  438 (440)
                      ++|++++++|+.+++++...+..|.|||+|  ++.|||+|..+++|.+++. +| +..++|.
T Consensus       188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G-~~~~~i~  246 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTG-EGLREIH  246 (318)
T ss_dssp             TEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTC-CSCEEEE
T ss_pred             CEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCC-CceEEEe
Confidence            999999999999998887678999999998  7899999999999999998 67 5555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.97  E-value=1.8e-28  Score=234.42  Aligned_cols=232  Identities=17%  Similarity=0.261  Sum_probs=187.1

Q ss_pred             cEEEe--ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC----CCceeEEecCccCc
Q psy14258        146 KIVYP--EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERFPMVTHKIVYP  219 (440)
Q Consensus       146 ~lY~~--~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG----~~~~~l~~~~~~~P  219 (440)
                      .|+|+  +.|.+.++++.....++. .+..|.++++|+..+.|||+|...  .+|.+++++|    +..+.++...+..|
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQ--RMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTT--TEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCC--CcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            37777  789999999987666654 678999999999999999999886  5999999998    55566666667899


Q ss_pred             eEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCC-CeEEEEeccCCCceEE
Q psy14258        220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRN-QSIIRVNKFNSDDYET  296 (440)
Q Consensus       220 ~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~-~~i~~~~~~~g~~~~~  296 (440)
                      .||++|..+++|||+|...++|.+++++|..++++... .+..|.+|+++  ++.|||+|+.. ++|++++.        
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~--------  150 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------  150 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC--------
Confidence            99999988999999999999999999999988877763 27899999998  56999999864 56665554        


Q ss_pred             EecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC
Q psy14258        297 IANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT  376 (440)
Q Consensus       297 ~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~  376 (440)
                                                                 ++. ..  ..+....+..|.||++|+.+++|||+|..
T Consensus       151 -------------------------------------------dG~-~~--~~~~~~~~~~P~gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          151 -------------------------------------------NGV-DI--YSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             -------------------------------------------TSC-CE--EEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             -------------------------------------------CCC-Ce--EEEEECCCCCceEEEEeccCCEEEEEECC
Confidence                                                       222 00  00111235679999999999999999999


Q ss_pred             CCeEEEEecCCCCeEEEEEC--CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe-CCCeeeEEee
Q psy14258        377 SYVIERRKMFGRGKEVVIDT--GIYNVEGMAVDWMANNLYWTDAGIGTINVAKI-SDFSIRKVLY  438 (440)
Q Consensus       377 ~~~I~r~~~~g~~~~~~~~~--~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~-~g~~~~~~l~  438 (440)
                      .++|++++++|+.+++++..  .+..|.|||+|  +++|||+|.++++|.+++. +| +..++|.
T Consensus       185 ~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g-~~~~~i~  246 (316)
T 1ijq_A          185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG-SDVNLLA  246 (316)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC-CCCEEEE
T ss_pred             CCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCC-cceEEEe
Confidence            99999999999988888763  47889999998  6899999999999999996 67 5455554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.96  E-value=1e-25  Score=209.87  Aligned_cols=253  Identities=18%  Similarity=0.198  Sum_probs=200.1

Q ss_pred             cEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEE
Q psy14258         93 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAI  167 (440)
Q Consensus        93 ~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~  167 (440)
                      ..|||++.  ++|+++.+++.....+.     ....+......|++ |+|+.+++|||+    ++|.+++++|...+.++
T Consensus         2 ~~l~~~~~--~~I~~~~~~g~~~~~~~-----~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            2 THLLFAQT--GKIERLPLERNTMKKTE-----AKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII   74 (267)
T ss_dssp             EEEEEEEE--EEEEEEEESSSCBCGGG-----CEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred             cEEEEEcC--CeEEEEEecCccccccc-----ceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE
Confidence            46899986  48999999876543210     00123334568999 999999999999    79999999998877777


Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC--CCcEEEEE
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY--LDFIDRIN  245 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~--~~~i~~~~  245 (440)
                      ...+..|.+|++|+.+++|||+|...  .+|.+.+++|..++.+....+..|+++++|+.+++|||+|..  .++|++++
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~--~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQL--DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCC--CEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            66778999999999889999999886  599999999998877776667899999999889999999987  57999999


Q ss_pred             ccCCCcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCcee
Q psy14258        246 YDGTDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       246 ~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      ++|...+.+... .+..|.||+++.  ++|||+|...++|.+++..++....++.....|.++.+.           +++
T Consensus       153 ~dg~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-----------~~~  220 (267)
T 1npe_A          153 MDGTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-----------GKN  220 (267)
T ss_dssp             TTSCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-----------TTE
T ss_pred             cCCCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-----------CCE
Confidence            999888777643 267899999984  599999999999999998654433455566689998765           578


Q ss_pred             EEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCC
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE  368 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~  368 (440)
                      ||+++...++|.+++.++. .. ...++......|.+|++.+...
T Consensus       221 lyva~~~~~~v~~~d~~~g-~~-~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          221 LYYTDWKTNSVIAMDLAIS-KE-MDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEETTTTEEEEEETTTT-EE-EEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEECCCCeEEEEeCCCC-Cc-eEEEccccccccceeeecCccC
Confidence            9999988899999998754 11 1223333344699999987643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.95  E-value=1.4e-28  Score=258.81  Aligned_cols=322  Identities=16%  Similarity=0.219  Sum_probs=221.4

Q ss_pred             ecccCCC-CCCCCCCcccCCCceEEc-cCCeeeecceeEEEEeecccceeee---EEEecCCCcee------eeeecccc
Q psy14258         13 DADECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQGVKTHLYETIEAFWEECF---GPMDIEEWDEG------LSFLTFAQ   81 (440)
Q Consensus        13 d~~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~~~~ll~s~~~~~~~~~I---~~~~l~~~~~~------~~~~~~~~   81 (440)
                      +++||.. ++.|+|.|.|++++|.|. +.||.+.+. ...- +.+++-....   .=++..+. +.      ........
T Consensus       293 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~~~~-~~C~-dideC~~~~~C~~~C~n~~g~-y~C~C~~G~~~~~~~~  369 (699)
T 1n7d_A          293 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRCE-DIDECQDPDTCSQLCVNLEGG-YKCQCEEGFQLDPHTK  369 (699)
T ss_dssp             CCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCCCSS-SCCC-CCCCCSSSSSCTTTCCBCSSC-BCCCCCSSCBCCSSCC
T ss_pred             ccccccccccCcCCCcccCCCCcEEeCCCCeEcCCC-Cccc-CccccCCCCccccccccCCCC-eeeeeecccccCCCCC
Confidence            5788885 578999999999999999 999987220 0000 0011000000   00011111 10      01100000


Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFC  156 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~  156 (440)
                      .-.  +.+ ....|++++.  +.|+++.+++.....           +...+..|.+ |+|+..+.|||+    ++|.++
T Consensus       370 ~C~--~~~-~~~~ll~~~~--~~I~~id~~~~~~~~-----------~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~  433 (699)
T 1n7d_A          370 ACK--AVG-SIAYLFFTNR--HEVRKMTLDRSEYTS-----------LIPNLRNVVALDTEVASNRIYWSDLSQRMICST  433 (699)
T ss_dssp             CCB--CCS-SCCCBCCCCT--TC-CEECTTSCCEEC-----------CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEE
T ss_pred             ccc--ccc-cceeEEecCc--cceEEEeCCCCccee-----------eeccCcceEEEccccccCeEEEEecCCCeEEEE
Confidence            011  111 2244666654  567777766543221           2356788999 999999999999    789999


Q ss_pred             ecCC----ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEE
Q psy14258        157 THYM----EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVY  232 (440)
Q Consensus       157 ~~dg----~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly  232 (440)
                      +++|    +..+.++...+..|.|||||+..|.|||+|...  .+|.+++++|..+++++...+..|+||++|+.+++||
T Consensus       434 ~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~--~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly  511 (699)
T 1n7d_A          434 QLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMY  511 (699)
T ss_dssp             ESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTT--SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCE
T ss_pred             ecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccC--CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEE
Confidence            9997    455555555778999999999899999999876  5999999999998888877788999999999999999


Q ss_pred             EEeCCC-CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEe
Q psy14258        233 WVDTYL-DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIY  309 (440)
Q Consensus       233 ~~d~~~-~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~  309 (440)
                      |+|... ++|++++++|+.++++... .+..|.||+++  +++|||+|+..++|.+++.. |....++.           
T Consensus       512 ~td~~~~~~I~~~~~dG~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d-G~~~~~~~-----------  578 (699)
T 1n7d_A          512 WTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTIL-----------  578 (699)
T ss_dssp             ECCCSSSCCEEBCCSSSCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSS-SSCCEEEC-----------
T ss_pred             EcccCCCCeEEEEeCCCCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccC-CCceEEEE-----------
Confidence            999876 7999999999988877653 27899999997  56999999998899888764 22111100           


Q ss_pred             ccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC-CC
Q psy14258        310 HRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF-GR  388 (440)
Q Consensus       310 ~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~-g~  388 (440)
                                                    ..          ...+..|.+|++|.  +.|||+|...++|.+++.. |.
T Consensus       579 ------------------------------~~----------~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          579 ------------------------------ED----------EKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             ------------------------------CC----------SSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEE
T ss_pred             ------------------------------ec----------CCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCC
Confidence                                          00          01245788999985  5899999999999999975 54


Q ss_pred             CeEEEEECCCCCeeeEEEecCCC
Q psy14258        389 GKEVVIDTGIYNVEGMAVDWMAN  411 (440)
Q Consensus       389 ~~~~~~~~~~~~~~glAvD~~~~  411 (440)
                      ..++ +..++..|.+|++-...+
T Consensus       617 ~~~~-i~~~~~~P~~i~v~~~~~  638 (699)
T 1n7d_A          617 DVNL-LAENLLSPEDMVLFHQLT  638 (699)
T ss_dssp             EEEC-CCTTCSSCCCCCBCSSSS
T ss_pred             ceEE-eecCCCCCcEEEEeCccc
Confidence            4433 345677899998865444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=2.3e-21  Score=192.80  Aligned_cols=258  Identities=12%  Similarity=0.049  Sum_probs=189.1

Q ss_pred             ccccccce-eeee-cCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC--CCcEEEEeC
Q psy14258        131 RSLLDGTE-RFPM-VTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT--RPMLERSLL  203 (440)
Q Consensus       131 ~~~~~p~~-avD~-~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~--~~~I~r~~~  203 (440)
                      ..+..|.+ |+|+ ..++||++   ++|.+.++++...+.+.. ....|.+|++|+..++||++|....  ...+.....
T Consensus       134 ~~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          134 GGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             BCCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             cCCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            35789999 9998 57889999   689999999987776655 6788999999997667999998532  135777888


Q ss_pred             CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCC
Q psy14258        204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQ  281 (440)
Q Consensus       204 dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~  281 (440)
                      +|..........+.+|.++++|+.+++|||+|...++|.+++.++.....+........|.+|+++.+  +|||+|..++
T Consensus       213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~  292 (430)
T 3tc9_A          213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH  292 (430)
T ss_dssp             GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred             CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence            88655211112467899999998799999999999999999999876644443212467999999754  6999999999


Q ss_pred             eEEEEeccCCCc----eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCC
Q psy14258        282 SIIRVNKFNSDD----YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKR  357 (440)
Q Consensus       282 ~i~~~~~~~g~~----~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~  357 (440)
                      .|++++......    ..++.+..                           .           ..+.. +.......+..
T Consensus       293 ~I~~~~~d~~~~~~~~~~~~ag~~---------------------------g-----------~~g~~-dg~~~~a~~~~  333 (430)
T 3tc9_A          293 YILRSDYDWKTKRLTTPYIVCGQQ---------------------------G-----------AKDWV-DGVGKKARMHA  333 (430)
T ss_dssp             EEEEEEEETTTTEECCCEEEEECT---------------------------T-----------CBCCB-CEEGGGCBBSS
T ss_pred             EEEEEeCCcccccccceEEEeccC---------------------------C-----------CCCCC-CCCCcceEeCC
Confidence            999988643211    01111000                           0           00000 11111224568


Q ss_pred             ce-EEEEEc-------CCCEEEEEECCCCeEEEEecCCCCeEEEEEC----------C-------CCCeeeEEEecCCCc
Q psy14258        358 PS-VIDYHE-------KEEYIYYAELTSYVIERRKMFGRGKEVVIDT----------G-------IYNVEGMAVDWMANN  412 (440)
Q Consensus       358 p~-~l~~d~-------~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~----------~-------~~~~~glAvD~~~~~  412 (440)
                      |. +++++.       .++.|||+|...++|++++.+|. ..++...          +       +..|.|||+|..+++
T Consensus       334 P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  412 (430)
T 3tc9_A          334 PRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC  412 (430)
T ss_dssp             EEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             CcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE
Confidence            98 888863       35789999999999999998883 4444432          1       557999999987899


Q ss_pred             EEEEeCCCCeEEEEEeC
Q psy14258        413 LYWTDAGIGTINVAKIS  429 (440)
Q Consensus       413 lYwtd~~~~~I~~~~~~  429 (440)
                      ||++|.++++|.+++++
T Consensus       413 lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          413 FFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEEGGGTEEEEEEEC
T ss_pred             EEEEECCCCeEEEEccC
Confidence            99999999999999886

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=1.5e-21  Score=194.10  Aligned_cols=250  Identities=13%  Similarity=0.139  Sum_probs=183.4

Q ss_pred             EEEEEeee-cccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-c-------e
Q psy14258         83 AIYFCTHY-MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-E-------A  152 (440)
Q Consensus        83 ~~~i~~d~-~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-~-------~  152 (440)
                      |.+|++|+ .++.||++|.. ++|+++++++..+..           +......|.+ |+|+.++.|||+ .       .
T Consensus       139 P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~-----------~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~  206 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST-----------VYSGLSKVRTICWTHEADSMIITNDQNNNDRPN  206 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE-----------EECCCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred             CCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE-----------EecCCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence            99999998 58999999998 888888877644322           2346778999 999988889999 2       5


Q ss_pred             EEEEecCCceE--EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-CccCceEEEEeCCCC
Q psy14258        153 IYFCTHYMEHC--MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH-KIVYPYGVTVDFPTK  229 (440)
Q Consensus       153 I~~~~~dg~~~--~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-~~~~P~gl~vD~~~~  229 (440)
                      +.+.+.+|...  ..+.  .+..|.+|++||..|+|||+|++.  ++|++.++++.....+... ...+|++|++|+.++
T Consensus       207 v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~--~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          207 NYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNA--GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             EEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTT--TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred             EEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCC--CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence            67778787654  3332  468899999999889999999987  5999999998766444443 346899999998888


Q ss_pred             EEEEEeCCCCcEEEEEccCCC-----cEEEecC-------------CccCcee-eeeEec---------CEEEEEecCCC
Q psy14258        230 HVYWVDTYLDFIDRINYDGTD-----RKTIRKG-------------FPVQNLY-DITVFE---------NNLFVTSWRNQ  281 (440)
Q Consensus       230 ~ly~~d~~~~~i~~~~~dG~~-----~~~i~~~-------------~~~~~p~-gl~~~~---------~~ly~td~~~~  281 (440)
                      +|||+|...++|.+++++|..     +.++...             ..+.+|. |+++.+         +.||++|+.++
T Consensus       283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~  362 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH  362 (430)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred             EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence            899999999999999999752     2233211             1367899 899863         49999999999


Q ss_pred             eEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEE
Q psy14258        282 SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVI  361 (440)
Q Consensus       282 ~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l  361 (440)
                      +|.+++. +|....+......                          .         ..+  ...........+..|.+|
T Consensus       363 ~I~~i~~-~G~v~~~~g~g~~--------------------------~---------~~G--~~dG~~~~~~~~~~P~gi  404 (430)
T 3tc9_A          363 CIRILTP-QGRVTTFAGRGSN--------------------------G---------TSG--YNDGDLRQEARFNHPEGI  404 (430)
T ss_dssp             EEEEECT-TSEEEEEEECCTT--------------------------S---------SSS--CBCEETTTTCBCSSEEEE
T ss_pred             EEEEECC-CCcEEEEEeCCCC--------------------------C---------CCc--ccCCCchhhcEeCCCcEE
Confidence            9999885 3422211111000                          0         000  000000011236689999


Q ss_pred             EEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        362 DYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       362 ~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      ++|+.++.||++|...++|+++.++
T Consensus       405 avd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          405 VYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEccC
Confidence            9999889999999999999999875

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.89  E-value=1.7e-21  Score=183.89  Aligned_cols=198  Identities=8%  Similarity=0.062  Sum_probs=156.3

Q ss_pred             eeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEE---cCCCCceeEEeCCCCCcceeeccccccceeeccccccc
Q psy14258         61 CFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAID---LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT  137 (440)
Q Consensus        61 ~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d---~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~  137 (440)
                      .|++++++|...+.....     .+.++.+.+++|||++   .....|+++.++|+..+.+          . ..    .
T Consensus        89 ~Iy~i~~dg~~~~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~l----------t-~~----~  148 (302)
T 3s25_A           89 SLCRIKRNGHGSTVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI----------K-NH----Y  148 (302)
T ss_dssp             EEEEEETTSCCCEEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEE----------E-SS----C
T ss_pred             eEEEEeCCCCcceEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEE----------e-CC----C
Confidence            499999999976632221     1224556789999999   5667899999998764432          1 11    2


Q ss_pred             e-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE
Q psy14258        138 E-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV  212 (440)
Q Consensus       138 ~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~  212 (440)
                      . ++||.+++|||+    .+|.+++++|..++.|..    .+..++++|..++|||+++... .+|+|+++||+.++.|.
T Consensus       149 ~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~----~~~~~~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~~~~Lt  223 (302)
T 3s25_A          149 LFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD----CNCYKPVVLDDTNVYYMDVNRD-NAIVHVNINNPNPVVLT  223 (302)
T ss_dssp             CCCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC----SCEEEEEEEETTEEEEEEGGGT-TEEEEECSSSCCCEECS
T ss_pred             ceEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC----CCccceeeecCCEEEEEEcCCC-cEEEEEECCCCCeEEEe
Confidence            2 689999999999    689999999999887754    2445667788999999999865 79999999999998887


Q ss_pred             ecCccCceEEEEeCCCCEEEEE-eCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCC
Q psy14258        213 THKIVYPYGVTVDFPTKHVYWV-DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNS  291 (440)
Q Consensus       213 ~~~~~~P~gl~vD~~~~~ly~~-d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g  291 (440)
                      ...+  |.   +|+.+++|||+ +...+.|+++++||++++.+..+    ...++++++++|||+||..+.|++++. .|
T Consensus       224 ~~~~--~~---~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~----~~~~i~i~~d~Iy~td~~~~~i~~~~~-dG  293 (302)
T 3s25_A          224 EANI--EH---YNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG----EFCNINVTSQYVYFTDFVSNKEYCTST-QN  293 (302)
T ss_dssp             CSCE--EE---EEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES----CEEEEEECSSEEEEEETTTCCEEEEES-SS
T ss_pred             CCCc--ce---EEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC----ccceEEEeCCEEEEEECCCCeEEEEEC-CC
Confidence            6554  33   66679999997 56678999999999999988765    245899999999999999999999875 44


Q ss_pred             Cc
Q psy14258        292 DD  293 (440)
Q Consensus       292 ~~  293 (440)
                      ..
T Consensus       294 s~  295 (302)
T 3s25_A          294 PD  295 (302)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.88  E-value=4.3e-21  Score=190.76  Aligned_cols=250  Identities=10%  Similarity=0.106  Sum_probs=177.2

Q ss_pred             EEEEEeeec--ccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEec--------
Q psy14258         83 AIYFCTHYM--EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYPE--------  151 (440)
Q Consensus        83 ~~~i~~d~~--~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~~--------  151 (440)
                      |.+|++|+.  ++.|||+|.. ++|+++++....+..           +...+..|.+ |+|+.++ |||++        
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~-----------~~~~~~~P~giavd~dG~-lyVad~~~~~~~~  207 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI-----------KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNT  207 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE-----------ECCCCSCEEEEEECTTCC-EEEEECCSCTTSE
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE-----------eecCCCCccEEEECCCCC-EEEEcCCCCcccc
Confidence            999999984  7999999998 889988875433222           2346778999 9999888 99991        


Q ss_pred             eEEEEecCCceE-EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC-CCCceeEEec-CccCceEEEEeCCC
Q psy14258        152 AIYFCTHYMEHC-MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTH-KIVYPYGVTVDFPT  228 (440)
Q Consensus       152 ~I~~~~~dg~~~-~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d-G~~~~~l~~~-~~~~P~gl~vD~~~  228 (440)
                      .+.....++... ...+. .+..|.+|++||..|.|||+|...  ++|.+.+++ |...+.+... ...+|.+|++|+.+
T Consensus       208 gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~--~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          208 GIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHH--AMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG  284 (433)
T ss_dssp             EEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTC--SEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred             eEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCC--CEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence            255555554432 12222 578999999999889999999886  599999998 5542444432 34567899999888


Q ss_pred             CEEEEEeCCCCcEEEEEccCCC-----cEEEecC-------------CccCceeeeeE---------ec-CEEEEEecCC
Q psy14258        229 KHVYWVDTYLDFIDRINYDGTD-----RKTIRKG-------------FPVQNLYDITV---------FE-NNLFVTSWRN  280 (440)
Q Consensus       229 ~~ly~~d~~~~~i~~~~~dG~~-----~~~i~~~-------------~~~~~p~gl~~---------~~-~~ly~td~~~  280 (440)
                      ++||++|...++|.++++++..     +.++...             ..+.+|.|+++         +. +.||++|+.+
T Consensus       285 ~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n  364 (433)
T 4hw6_A          285 DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS  364 (433)
T ss_dssp             SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence            8899999999999999988532     2233221             13678999999         44 4999999999


Q ss_pred             CeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceE
Q psy14258        281 QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSV  360 (440)
Q Consensus       281 ~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~  360 (440)
                      ++|.++++ +|. ..++.+...         ..++                +.     .++.      ......+..|.+
T Consensus       365 ~~I~~~~~-~G~-v~t~~G~g~---------~~~~----------------G~-----~dG~------~~~~~~~~~P~g  406 (433)
T 4hw6_A          365 HTVRVLTP-EGR-VTTYAGRGN---------SREW----------------GY-----VDGE------LRSQALFNHPTS  406 (433)
T ss_dssp             TEEEEECT-TSE-EEEEECCCT---------TCSS----------------CC-----BCEE------TTTTCBCSSEEE
T ss_pred             CEEEEECC-CCC-EEEEEeCCC---------CCcc----------------cc-----CCCc------cccccEeCCCcE
Confidence            99999986 442 222222110         0000                00     0110      001124678999


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      |++|+.++.||++|...++|+++.++
T Consensus       407 iavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          407 IAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEecC
Confidence            99997789999999999999999875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.88  E-value=1.9e-20  Score=186.10  Aligned_cols=256  Identities=10%  Similarity=-0.005  Sum_probs=181.0

Q ss_pred             cccccce-eeeec--CCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC--CCcEEEEeC
Q psy14258        132 SLLDGTE-RFPMV--THKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT--RPMLERSLL  203 (440)
Q Consensus       132 ~~~~p~~-avD~~--~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~--~~~I~r~~~  203 (440)
                      .+..|.+ |+|+.  .++|||+   ++|.+.++++.....+. ..+..|.+|++|+. |.||++|....  ...+.+...
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~d-G~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLN-GDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTT-CCEEEEECCSCTTSEEEEEECG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCC-CCEEEEcCCCCcccceEEEEEC
Confidence            6789999 99984  7889999   68999999665655554 37788999999995 55999997531  124666666


Q ss_pred             CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEecCCccCceeeeeEecC--EEEEEecCC
Q psy14258        204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFEN--NLFVTSWRN  280 (440)
Q Consensus       204 dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~--~ly~td~~~  280 (440)
                      ++..........+..|+++++|+.+++|||+|...++|++++.++... ..+........+++|++..+  .||++|..+
T Consensus       215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            554432111224788999999987999999999999999999984333 44443212455778998754  799999999


Q ss_pred             CeEEEEeccC--CCc--eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC
Q psy14258        281 QSIIRVNKFN--SDD--YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK  356 (440)
Q Consensus       281 ~~i~~~~~~~--g~~--~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~  356 (440)
                      ++|++++...  +..  ..++.+..                           .           ..+.. +.......+.
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~---------------------------g-----------~~g~~-dg~~~~a~~~  335 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQH---------------------------S-----------SPGWV-DGMGTGARLW  335 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECT---------------------------T-----------CCCCB-CEEGGGSBCS
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecC---------------------------C-----------CCccC-CCcccceEEc
Confidence            9999987542  211  01111000                           0           00000 1111123466


Q ss_pred             CceEEEE--------EcCCCEEEEEECCCCeEEEEecCCCCeEEEEEC-----------------CCCCeeeEEEecCCC
Q psy14258        357 RPSVIDY--------HEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT-----------------GIYNVEGMAVDWMAN  411 (440)
Q Consensus       357 ~p~~l~~--------d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~-----------------~~~~~~glAvD~~~~  411 (440)
                      .|.++++        |..++.|||+|...++|.+++++| ...++...                 .+..|.|||+|...+
T Consensus       336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g  414 (433)
T 4hw6_A          336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK  414 (433)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred             CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC
Confidence            8999999        234678999999999999999988 34444321                 146799999997789


Q ss_pred             cEEEEeCCCCeEEEEEeC
Q psy14258        412 NLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       412 ~lYwtd~~~~~I~~~~~~  429 (440)
                      +||++|.++++|.+++++
T Consensus       415 ~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          415 CFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEecC
Confidence            999999999999999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.87  E-value=1.6e-19  Score=178.53  Aligned_cols=236  Identities=11%  Similarity=0.032  Sum_probs=180.2

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCC-cEEEEEccC
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD-FIDRINYDG  248 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~-~i~~~~~dG  248 (440)
                      .+..|.+|++|+ .|.|||+|...  .+|.+.++++.....+... ...|. +++++.++.|||++...+ .|..++.++
T Consensus       129 ~~~~P~~la~d~-~g~lyv~d~~~--~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          129 KFKYMWGIAAVG-NNTVLAYQRDD--PRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCCCEEEEEECS-TTEEEEEETTT--TEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             ccCCceEEEEeC-CCCEEEEecCC--CcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            578999999998 68899999875  5999999997666655543 45677 999999999999998665 899999887


Q ss_pred             CCc-EEEec--CCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEe-----c--CCCCe-EEEEeccCCCC
Q psy14258        249 TDR-KTIRK--GFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIA-----N--FSRPF-AIHIYHRQKQP  315 (440)
Q Consensus       249 ~~~-~~i~~--~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~-----~--~~~p~-~~~v~~~~~qp  315 (440)
                      ... ..+..  ......|.+++++.  +.||+++. ++.|++++..++. ..++.     .  ...|. ++++.      
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~------  275 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYY------  275 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEE------
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEe------
Confidence            654 33311  11367899999986  59999886 7899999987654 33331     1  11356 77766      


Q ss_pred             CCCCC-ceeEEeecCCccEEEEEEcCCCCCCceeeeee--------------cCCCCceEEEEEcCCCEEEEEEC-CCCe
Q psy14258        316 DALKP-STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI--------------TDLKRPSVIDYHEKEEYIYYAEL-TSYV  379 (440)
Q Consensus       316 ~~~~~-~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~--------------~~~~~p~~l~~d~~~~~vy~~d~-~~~~  379 (440)
                          | ++.||+++...++|++++.++.    ...+.-              ..+..|.+|++|+.+. ||++|. ..++
T Consensus       276 ----p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~  346 (409)
T 3hrp_A          276 ----FVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYC  346 (409)
T ss_dssp             ----TTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCE
T ss_pred             ----CCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCE
Confidence                4 4889999998899999998875    111111              1256799999999766 999999 9999


Q ss_pred             EEEEe-cCCCCeEEEEEC--------------CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        380 IERRK-MFGRGKEVVIDT--------------GIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       380 I~r~~-~~g~~~~~~~~~--------------~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      |++++ .+| ...++...              .+..|.|||+|.. ++||++|..+++|.+++++
T Consensus       347 I~~~~~~~G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          347 LRKLDILDG-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEEETTTT-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEEC
T ss_pred             EEEEECCCC-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEeC
Confidence            99999 455 34455442              1678999999976 8999999999999999874

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.87  E-value=2.2e-19  Score=169.48  Aligned_cols=258  Identities=11%  Similarity=0.129  Sum_probs=189.5

Q ss_pred             ecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC-----------CCCcEEEEeCCC
Q psy14258        142 MVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA-----------TRPMLERSLLDG  205 (440)
Q Consensus       142 ~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~-----------~~~~I~r~~~dG  205 (440)
                      ..++.||+.     .+|.+++.||+..+.|..   ..+.-|.++  .++||+++...           +...|.++++||
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~---~~~~~i~~~--g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN---DTAMYINAD--KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSCEEEEE---EEEEEEEEC--SSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCCEEccC---CceeeEEEc--CCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            468899999     689999999998877754   346777665  59999998653           125899999999


Q ss_pred             CCceeEEecCccCceEEEEeCCCCEEEEEe---CCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCe
Q psy14258        206 TERFPMVTHKIVYPYGVTVDFPTKHVYWVD---TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQS  282 (440)
Q Consensus       206 ~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d---~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~  282 (440)
                      +.++.|.... .  ..+++  .+++|||++   .....|+++++||++++.+.... . .  .+...++.|||++.....
T Consensus        98 ~~~~~l~~~~-~--~~~s~--~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~-~-~--~~~~~g~~iy~t~~g~~~  168 (302)
T 3s25_A           98 HGSTVLDPDP-C--IYASL--IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY-L-F--TCNTSDRYFYYNNPKNGQ  168 (302)
T ss_dssp             CCCEEEECSC-E--EEEEE--ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC-C-C--CSEEETTEEEEECTTTCC
T ss_pred             CcceEeecCC-c--cEEEE--eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC-c-e--EeeEECCEEEEEeCCCce
Confidence            9987665432 1  23455  599999999   56779999999999999887753 2 2  347789999999988889


Q ss_pred             EEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCC-ccEEEEEEcCCCCCCceeeeeecCCCCceEE
Q psy14258        283 IIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK-PAIIKGLTFKRDGTTEQAIMPITDLKRPSVI  361 (440)
Q Consensus       283 i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l  361 (440)
                      |++++..++ ..+.+..  .+....+.     |    ..++|+|++.. ...|.++.+++. ..   .+.... ..   .
T Consensus       169 Iy~~~l~g~-~~~~l~~--~~~~~~~~-----P----~g~~iy~t~~~~~~~I~~~~ldG~-~~---~~Lt~~-~~---~  228 (302)
T 3s25_A          169 LYRYDTASQ-SEALFYD--CNCYKPVV-----L----DDTNVYYMDVNRDNAIVHVNINNP-NP---VVLTEA-NI---E  228 (302)
T ss_dssp             EEEEETTTT-EEEEEEC--SCEEEEEE-----E----ETTEEEEEEGGGTTEEEEECSSSC-CC---EECSCS-CE---E
T ss_pred             EEEEECCCC-CEEEEeC--CCccceee-----e----cCCEEEEEEcCCCcEEEEEECCCC-Ce---EEEeCC-Cc---c
Confidence            999997544 4444432  22222221     1    14789998754 258999999998 22   111111 11   2


Q ss_pred             EEEcCCCEEEEE-ECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEeee
Q psy14258        362 DYHEKEEYIYYA-ELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK  439 (440)
Q Consensus       362 ~~d~~~~~vy~~-d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l~~  439 (440)
                      .+++.+++|||+ +.....|+++++||+.++++...   ...+|  ...++.|||+|...+.|.+++++| +.+..|++
T Consensus       229 ~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~~dG-s~~~~l~~  301 (302)
T 3s25_A          229 HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTSTQN-PDTIKALQ  301 (302)
T ss_dssp             EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEESSS-CCSCEECC
T ss_pred             eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEECCC-CCceEecC
Confidence            377889999998 55578999999999999888763   23444  456999999999888999999999 66666653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.2e-19  Score=178.67  Aligned_cols=259  Identities=12%  Similarity=0.087  Sum_probs=187.6

Q ss_pred             ccccccce-eeee-cCCcEEEe----ceEEEEecCCceEEEEEcCC---CCCceEEEE-------cCCCCeEEEEEcCCC
Q psy14258        131 RSLLDGTE-RFPM-VTHKIVYP----EAIYFCTHYMEHCMIAIDLN---LSKPRGIAL-------DPTSGYMFFTKWGAT  194 (440)
Q Consensus       131 ~~~~~p~~-avD~-~~~~lY~~----~~I~~~~~dg~~~~~~~~~~---~~~P~~iav-------d~~~g~lywtd~~~~  194 (440)
                      ..+..|.+ |+|+ ..++||++    ++|.+.++.+....+++...   +..|++|++       |+..++||++++...
T Consensus       136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          136 CGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             BCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             cccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            45778999 9998 58889999    68999999998888887642   467999999       997667999998752


Q ss_pred             ----CCcEEEEeCC--CCCce----eEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-------CCCc------
Q psy14258        195 ----RPMLERSLLD--GTERF----PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-------GTDR------  251 (440)
Q Consensus       195 ----~~~I~r~~~d--G~~~~----~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-------G~~~------  251 (440)
                          ...|.+.+.+  |.-..    ..+. ...+|+|+++|+.+++||++|...+.|.+++++       +...      
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                1347777443  34321    2333 467899999999899999999999999999987       3332      


Q ss_pred             ------EEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCce----EEEecCCCCeEEEEeccCCCCCCCC
Q psy14258        252 ------KTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDY----ETIANFSRPFAIHIYHRQKQPDALK  319 (440)
Q Consensus       252 ------~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~----~~~~~~~~p~~~~v~~~~~qp~~~~  319 (440)
                            +.+........|++|++..+  .||++|..+++|++++.......    .++.+..                  
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~------------------  356 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY------------------  356 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT------------------
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC------------------
Confidence                  23332112457999999854  69999999999999876421110    1111100                  


Q ss_pred             CceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCce-EEEEEc------CCCEEEEEECCCCeEEEEecCCCCeEE
Q psy14258        320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPS-VIDYHE------KEEYIYYAELTSYVIERRKMFGRGKEV  392 (440)
Q Consensus       320 ~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~-~l~~d~------~~~~vy~~d~~~~~I~r~~~~g~~~~~  392 (440)
                               +..+.     .|+       ......+..|. ++++|.      .++.||+||...++|++++.+| ...+
T Consensus       357 ---------g~~G~-----~DG-------~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~T  414 (496)
T 3kya_A          357 ---------KQSGY-----RDD-------VGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVST  414 (496)
T ss_dssp             ---------TBCCC-----BCC-------BGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEE
T ss_pred             ---------CCCcc-----cCC-------cccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEE
Confidence                     00000     011       11123567899 777773      4678999999999999999988 4555


Q ss_pred             EEEC-----------------------CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        393 VIDT-----------------------GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       393 ~~~~-----------------------~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ++..                       .+..|.|||+|..+++||++|.++++|+++++++
T Consensus       415 iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          415 YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            5542                       1567999999987689999999999999999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=5.4e-20  Score=176.45  Aligned_cols=249  Identities=12%  Similarity=0.033  Sum_probs=180.0

Q ss_pred             ccccccce-eeeecCCcEEEe---c-------------------------eEEEEecC-CceEEEEEcCCCCCceEEEEc
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP---E-------------------------AIYFCTHY-MEHCMIAIDLNLSKPRGIALD  180 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~---~-------------------------~I~~~~~d-g~~~~~~~~~~~~~P~~iavd  180 (440)
                      ..+..|.+ |+|+.+ +||++   +                         +|.+.+.+ |+.........+..|.+|++|
T Consensus        21 ~~l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           21 LLPGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CCCSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC
T ss_pred             eecCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC
Confidence            46788999 999875 69998   3                         48888886 665544444557899999999


Q ss_pred             CCCCeEEEEEcCCCCCcEEEEeCCCCC--ceeEE--------ecCccCceEEEEeCCCCEEEEEeC-CCCcEEEEEccCC
Q psy14258        181 PTSGYMFFTKWGATRPMLERSLLDGTE--RFPMV--------THKIVYPYGVTVDFPTKHVYWVDT-YLDFIDRINYDGT  249 (440)
Q Consensus       181 ~~~g~lywtd~~~~~~~I~r~~~dG~~--~~~l~--------~~~~~~P~gl~vD~~~~~ly~~d~-~~~~i~~~~~dG~  249 (440)
                      + .|.||+++...  .+|.+.+++|..  ...+.        ...+..|.+|++|+.+++||++|. ..++|.+++.+|.
T Consensus       100 ~-~g~l~v~d~~~--~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~  176 (329)
T 3fvz_A          100 T-DGNYWVTDVAL--HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK  176 (329)
T ss_dssp             T-TSCEEEEETTT--TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC
T ss_pred             C-CCCEEEEECCC--CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC
Confidence            8 68899999876  599999999973  33332        233568999999977999999997 7899999999988


Q ss_pred             CcEEEec-C-------CccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCC
Q psy14258        250 DRKTIRK-G-------FPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALK  319 (440)
Q Consensus       250 ~~~~i~~-~-------~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~  319 (440)
                      ....+.. +       ..+..|.+|+++.  +.||++|+.+++|.+++..+|+....+.....                 
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~-----------------  239 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF-----------------  239 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT-----------------
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc-----------------
Confidence            7766642 1       1366799999985  59999999999999998865654332211000                 


Q ss_pred             CceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE---EC
Q psy14258        320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI---DT  396 (440)
Q Consensus       320 ~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~---~~  396 (440)
                               .  ..++             .+..    .| ++.++..+ .+|+++...++|+..++........+   ..
T Consensus       240 ---------~--~~~~-------------~~~~----~p-g~~~~~~g-~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~  289 (329)
T 3fvz_A          240 ---------G--RNVF-------------AISY----IP-GFLFAVNG-KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK  289 (329)
T ss_dssp             ---------T--TCEE-------------EEEE----ET-TEEEEEEC-CCCTTCSCCCCEEEEETTTCCEEEEECCSSS
T ss_pred             ---------C--CCcc-------------eeee----cC-CEEEEeCC-CEEeccCCCcEEEEEEcCCCeEEEEEcCCCC
Confidence                     0  0000             0000    12 44555443 37777777788888886543333333   24


Q ss_pred             CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCC
Q psy14258        397 GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDF  431 (440)
Q Consensus       397 ~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~  431 (440)
                      .+..|.+||+|..+ +||++|.++++|.+++++|+
T Consensus       290 ~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          290 HFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred             ccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence            67789999999865 99999999999999999984

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.86  E-value=2e-18  Score=161.85  Aligned_cols=274  Identities=17%  Similarity=0.089  Sum_probs=201.0

Q ss_pred             ccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG  205 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG  205 (440)
                      .....|.+ ++|.. ++||++    +.|.+.+.+|......+......|.+|++|+ .|.||+++...  .+|.+.+.+|
T Consensus        17 ~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~--~~v~~~d~~g   92 (300)
T 2qc5_A           17 IPDSGPYGITSSED-GKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGA--NKIGKLSKKG   92 (300)
T ss_dssp             STTCCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEETTT--TEEEEECTTS
T ss_pred             CCCCCcceeeECCC-CCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECC-CCCEEEEecCC--CeEEEECCCC
Confidence            35678999 99976 559988    6899999886655433334457899999997 68999999765  5899999986


Q ss_pred             CCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEE
Q psy14258        206 TERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSII  284 (440)
Q Consensus       206 ~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~  284 (440)
                      .............|.+|++| ..++||+++...+.|.+++.+|........ .....|.+++++.+ .||+++...+.|.
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~  170 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTADGTIYEYDLP-NKGSYPAFITLGSDNALWFTENQNNSIG  170 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTTSCEEEEECS-STTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CeEEecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCCCCEEEccCC-CCCCCceeEEECCCCCEEEEecCCCeEE
Confidence            54322222234679999999 577899999888899999988544322222 23578999999764 8999998889999


Q ss_pred             EEeccCCCceEEEe--cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee-cCCCCceEE
Q psy14258        285 RVNKFNSDDYETIA--NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TDLKRPSVI  361 (440)
Q Consensus       285 ~~~~~~g~~~~~~~--~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~~~~p~~l  361 (440)
                      +++. +++......  ....|.++.+.          +++.|++++...+.|.+++.++.    .....+ .....|.+|
T Consensus       171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d----------~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i  235 (300)
T 2qc5_A          171 RITN-TGKLEEYPLPTNAAAPVGITSG----------NDGALWFVEIMGNKIGRITTTGE----ISEYDIPTPNARPHAI  235 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEEC----------TTSSEEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEE
T ss_pred             EECC-CCcEEEeeCCCCCCCcceEEEC----------CCCCEEEEccCCCEEEEEcCCCc----EEEEECCCCCCCceEE
Confidence            9998 555444322  23467777665          35678998876688999988544    122222 245689999


Q ss_pred             EEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       362 ~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      ++|+.+ .||+++...+.|.+++++|.-.+..+..+...|.+|++|.. ++||+++. . .|.+++++
T Consensus       236 ~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          236 TAGKNS-EIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKD-GSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EECSTT-CEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTT-SCEEEECS-S-EEEEEEEC
T ss_pred             EECCCC-CEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCC-CCEEEEcc-C-ceEEeCCC
Confidence            999875 59999988899999999764332223335678999999974 67999987 5 88888764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2.5e-19  Score=178.31  Aligned_cols=263  Identities=12%  Similarity=0.094  Sum_probs=183.4

Q ss_pred             EEEEEeee-cccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-ee-------eecCCcEEEe---
Q psy14258         83 AIYFCTHY-MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RF-------PMVTHKIVYP---  150 (440)
Q Consensus        83 ~~~i~~d~-~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-av-------D~~~~~lY~~---  150 (440)
                      +.+|++|+ ..+.||+++...++|++++++...+..+....       ...+..|.+ |+       |..++.||++   
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-------TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-------TSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-------ccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence            99999998 58999999998788988887765544331100       124567999 99       9888889999   


Q ss_pred             c-e------EEEEecC--CceE-----EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC--------CCC-
Q psy14258        151 E-A------IYFCTHY--MEHC-----MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD--------GTE-  207 (440)
Q Consensus       151 ~-~------I~~~~~d--g~~~-----~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d--------G~~-  207 (440)
                      + +      |.+.+.+  |...     ..+ . ...+|.++++||..|+||++++..  .+|++.+++        |.. 
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-~-~~~~p~giavdp~~g~LYvtd~~~--g~V~r~d~~~~~~~~~tg~~~  289 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLI-A-AYKQCNGATIHPINGELYFNSYEK--GQVFRLDLVDYFKTIKNGGSW  289 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEE-E-EESCCCCEEECTTTCCEEEEETTT--TEEEEECHHHHHHHHHTTCCC
T ss_pred             CCCcccCceEEEEecCCCCceeecccceee-c-cCCCceEEEEcCCCCeEEEEECCC--CEEEEEecccccccccCceee
Confidence            2 2      6666433  3442     233 2 457999999999999999999986  589999997        332 


Q ss_pred             ----------ceeEEec-CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-----EEEec--C-----------C
Q psy14258        208 ----------RFPMVTH-KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-----KTIRK--G-----------F  258 (440)
Q Consensus       208 ----------~~~l~~~-~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-----~~i~~--~-----------~  258 (440)
                                .+.+... ...+|.+|++|+.++.||++|...++|+++++++...     .++.-  +           .
T Consensus       290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a  369 (496)
T 3kya_A          290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEA  369 (496)
T ss_dssp             CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGC
T ss_pred             cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccc
Confidence                      1233332 3468999999988888999999999999999998642     33322  1           1


Q ss_pred             ccCcee-eeeEe--------cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecC
Q psy14258        259 PVQNLY-DITVF--------ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKG  329 (440)
Q Consensus       259 ~~~~p~-gl~~~--------~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~  329 (440)
                      .+.+|. ++++.        ++.||++|+.+++|+++++ +| ...++.+......+  . + ..+              
T Consensus       370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~--~-~-~~~--------------  429 (496)
T 3kya_A          370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSL--A-D-GNQ--------------  429 (496)
T ss_dssp             BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHH--H-H-SCS--------------
T ss_pred             ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccc--c-C-ccc--------------
Confidence            367899 88886        4599999999999999985 45 33333322110000  0 0 000              


Q ss_pred             CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       330 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                                  .+...........|..|.+|++|+.++.||++|...++|+++.+++.
T Consensus       430 ------------~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          430 ------------WGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             ------------CCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             ------------cccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                        00000001112357789999999987899999999999999999984

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.85  E-value=8e-19  Score=173.41  Aligned_cols=235  Identities=11%  Similarity=0.042  Sum_probs=177.6

Q ss_pred             ccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG  205 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG  205 (440)
                      ..+..|.+ |+|.. ++|||+    ++|.+.++++.....+... ...|. +++++..+.|||++.... .+|.+.+.++
T Consensus       128 a~~~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~-~~I~~~d~~~  203 (409)
T 3hrp_A          128 AKFKYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGT-HTVYVYMKAS  203 (409)
T ss_dssp             CCCCCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTT-CEEEEEEGGG
T ss_pred             cccCCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCC-ceEEEEEcCC
Confidence            35789999 99965 559999    6899999998777766553 56688 999998889999998653 4899999987


Q ss_pred             CCceeEE----ecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEE----ecCCccCcee-eeeEec--CEEE
Q psy14258        206 TERFPMV----THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI----RKGFPVQNLY-DITVFE--NNLF  274 (440)
Q Consensus       206 ~~~~~l~----~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i----~~~~~~~~p~-gl~~~~--~~ly  274 (440)
                      ......+    ......|+++++|+.+++||+++. .++|.+++.++.....+    ..+.....|+ +|+++.  +.||
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            6653333    224678999999988999999875 67999999987766555    2222223477 999985  5999


Q ss_pred             EEecCCCeEEEEeccCCCceEEEec---------------CCCCeEEEEeccCCCCCCCCCceeEEeecC-CccEEEEEE
Q psy14258        275 VTSWRNQSIIRVNKFNSDDYETIAN---------------FSRPFAIHIYHRQKQPDALKPSTFLLYAKG-KPAIIKGLT  338 (440)
Q Consensus       275 ~td~~~~~i~~~~~~~g~~~~~~~~---------------~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~-~~~~I~~i~  338 (440)
                      ++|..+++|++++.. ++...+...               +..|.++++.          +++.||+++. .+++|++++
T Consensus       283 v~d~~~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d----------~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          283 MSDQNLSSVYKITPD-GECEWFCGSATQKTVQDGLREEALFAQPNGMTVD----------EDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             EEETTTTEEEEECTT-CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC----------TTCCEEEEETTTTCEEEEEE
T ss_pred             EEeCCCCEEEEEecC-CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEe----------CCCCEEEEeCCCCCEEEEEE
Confidence            999999999999874 432222222               3457777766          4677999999 899999999


Q ss_pred             cCCCCCCceeeeee---------------cCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        339 FKRDGTTEQAIMPI---------------TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       339 ~~~~~~~~~~~~~~---------------~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      +...    .+....               ..+..|.+|++|+. +.||++|...++|+|+.++
T Consensus       352 ~~~G----~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          352 ILDG----YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTT----EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEEC
T ss_pred             CCCC----EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEeC
Confidence            5332    111111               12568999999997 8899999999999998763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.84  E-value=3.2e-19  Score=165.20  Aligned_cols=237  Identities=16%  Similarity=0.184  Sum_probs=176.3

Q ss_pred             CceEEEEcCCCCeEEE-EEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc
Q psy14258        173 KPRGIALDPTSGYMFF-TKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR  251 (440)
Q Consensus       173 ~P~~iavd~~~g~lyw-td~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~  251 (440)
                      .|.+|++|+ .|.||+ ++...  .+|.+.+.++.....+.......|.+|++|+ .++||+++. .+.|.+++.+|...
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMY--GRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSS--CEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECC-CCCEEEEccCCC--CcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE
Confidence            999999999 578999 87654  5899998876554433333456899999995 567999998 78999999988766


Q ss_pred             EEEecCCccCceeeeeEec-CEEEEEecCCCeEEEEeccCCCceEEE-ecCCCCeEEEEeccCCCCCCCCCceeEEeecC
Q psy14258        252 KTIRKGFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKG  329 (440)
Q Consensus       252 ~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~~-~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~  329 (440)
                      ..+... .+..|.+|+++. +.||+++..++.|.+++..+....... .....|.++.+.          +++.|++++.
T Consensus       100 ~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~----------~~g~l~v~~~  168 (270)
T 1rwi_B          100 TVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD----------NSGNVYVTDT  168 (270)
T ss_dssp             EECCCC-SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC----------TTCCEEEEEG
T ss_pred             eeeecC-CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe----------CCCCEEEEEC
Confidence            554332 257899999985 489999998899999965333222211 233467777766          4566899887


Q ss_pred             CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258        330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       330 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~  409 (440)
                      ..+.|.+++.++. .  ........+..|.+|++|+.+ .+|+++...+.|+++++++.........++..|.+|++|..
T Consensus       169 ~~~~i~~~~~~~~-~--~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          169 DNNRVVKLEAESN-N--QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             GGTEEEEECTTTC-C--EEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTT
T ss_pred             CCCEEEEEecCCC-c--eEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCC
Confidence            6689999998766 1  112233445789999999875 79999999999999999986554443345678999999975


Q ss_pred             CCcEEEEeCCCCeEEEEEeCC
Q psy14258        410 ANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       410 ~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      + +||+++.+.++|.+++++.
T Consensus       245 g-~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          245 R-TVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             C-CEEEEEGGGTEEEEECCCG
T ss_pred             C-CEEEEECCCCEEEEEcCCC
Confidence            5 7999999999999999886

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.84  E-value=2.4e-17  Score=154.38  Aligned_cols=274  Identities=17%  Similarity=0.126  Sum_probs=198.4

Q ss_pred             ccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG  205 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG  205 (440)
                      .....|.+ ++|..+ +||++    +.|.+.+.+|.............|.+|++|+ +|.||+++...  ++|.+.+.+|
T Consensus        12 ~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~--~~i~~~~~~g   87 (299)
T 2z2n_A           12 NQDTGPYGITVSDKG-KVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISS-DGEVWFTENAA--NKIGRITKKG   87 (299)
T ss_dssp             SSSCCEEEEEECTTS-CEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTT--TEEEEECTTS
T ss_pred             CcCCCccceEECCCC-CEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECC-CCCEEEeCCCC--CeEEEECCCC
Confidence            34568999 999765 58888    5799999986554433333457899999998 68999998764  5899999986


Q ss_pred             CCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEE
Q psy14258        206 TERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSII  284 (440)
Q Consensus       206 ~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~  284 (440)
                      .............|.+|++| ..++||+++...+.|.+++.+|......... ....|.+++++.+ .+|+++...+.|+
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDDGKIREYELPN-KGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTTCCEEEEECSS-TTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECCCCCEEEecCCC-CCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            53322222245689999999 4679999998888999999866543332222 2568999999854 9999998889999


Q ss_pred             EEeccCCCceEEE-e-cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEE
Q psy14258        285 RVNKFNSDDYETI-A-NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVI  361 (440)
Q Consensus       285 ~~~~~~g~~~~~~-~-~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l  361 (440)
                      +++. +++..... . ....|.++.+.          +++.|++++...+.|.+++.++.  .  ...... ....|.++
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~----------~~g~l~v~~~~~~~i~~~~~~g~--~--~~~~~~~~~~~~~~i  230 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKG----------NDDALWFVEIIGNKIGRITTSGE--I--TEFKIPTPNARPHAI  230 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEEC----------TTSSEEEEETTTTEEEEECTTCC--E--EEEECSSTTCCEEEE
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEEC----------CCCCEEEEccCCceEEEECCCCc--E--EEEECCCCCCCceeE
Confidence            9998 66544432 2 23457777665          35668888866689999988433  1  122222 35679999


Q ss_pred             EEEcCCCEEEEEECCCCeEEEEecCCCCeEEE-EECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVV-IDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       362 ~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~-~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ++|+.+ .+|+++...+.|.+++++|. ...+ ...+...|.+|++  ..++||+++. .+.|.+++++.
T Consensus       231 ~~~~~g-~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~i~~--~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          231 TAGAGI-DLWFTEWGANKIGRLTSNNI-IEEYPIQIKSAEPHGICF--DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             EECSTT-CEEEEETTTTEEEEEETTTE-EEEEECSSSSCCEEEEEE--CSSCEEEEET-TTEEEEEEEC-
T ss_pred             EECCCC-CEEEeccCCceEEEECCCCc-eEEEeCCCCCCccceEEe--cCCCEEEEec-CCcEEEEEcCc
Confidence            999874 59999988899999999763 2232 2344578999999  4778999986 57899998875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=2.3e-18  Score=165.08  Aligned_cols=247  Identities=10%  Similarity=0.041  Sum_probs=169.1

Q ss_pred             cccceEEEEEeeecccEEEEEEcCCCC------------------------ceeEEeCCCCCcceeeccccccceeeccc
Q psy14258         78 TFAQEAIYFCTHYMEHCMIAIDLNLSK------------------------PRGIALDPTSGYMFFTKWGATRPMLERSL  133 (440)
Q Consensus        78 ~~~~~~~~i~~d~~~~~ly~~d~~~~~------------------------I~~~~~~~~~~~~~~~~~~~~~v~~~~~~  133 (440)
                      +..  +.+|++|+. +++|+++...++                        |++.+.+...+..         ..-...+
T Consensus        23 l~~--v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---------~~~~~~~   90 (329)
T 3fvz_A           23 PGQ--VSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---------SSGKNLF   90 (329)
T ss_dssp             CSC--EEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---------EECTTTC
T ss_pred             cCC--ceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---------ccCCCcc
Confidence            445  999999986 789999988743                        4443332111100         0011345


Q ss_pred             cccce-eeeecCCcEEEe----ceEEEEecCCc--eEEEEE--------cCCCCCceEEEEcCCCCeEEEEEc-CCCCCc
Q psy14258        134 LDGTE-RFPMVTHKIVYP----EAIYFCTHYME--HCMIAI--------DLNLSKPRGIALDPTSGYMFFTKW-GATRPM  197 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~----~~I~~~~~dg~--~~~~~~--------~~~~~~P~~iavd~~~g~lywtd~-~~~~~~  197 (440)
                      ..|.+ |+|+.++ ||++    ++|.+.+++|.  ....+.        ...+..|.+|++||.+|.||++|. ..  .+
T Consensus        91 ~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~--~~  167 (329)
T 3fvz_A           91 YLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN--SR  167 (329)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC--CE
T ss_pred             CCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC--Ce
Confidence            68999 9997655 9999    78999999997  344443        234668999999998899999996 54  69


Q ss_pred             EEEEeCCCCCceeEEe---------cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCCccCceeeee
Q psy14258        198 LERSLLDGTERFPMVT---------HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGFPVQNLYDIT  267 (440)
Q Consensus       198 I~r~~~dG~~~~~l~~---------~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~~~~~p~gl~  267 (440)
                      |.+.+.+|.....+..         ..+..|.||++|+.+++||++|...++|.+++.+ |.....+........|++++
T Consensus       168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            9999999987665542         1356799999998889999999999999999998 77666664332235677777


Q ss_pred             EecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCce
Q psy14258        268 VFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQ  347 (440)
Q Consensus       268 ~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~  347 (440)
                      +..+.+|.++..                                            +++++....+|+.+++...    .
T Consensus       248 ~~pg~~~~~~g~--------------------------------------------~~v~~~~~~~v~~~~~~~g----~  279 (329)
T 3fvz_A          248 YIPGFLFAVNGK--------------------------------------------PYFGDQEPVQGFVMNFSSG----E  279 (329)
T ss_dssp             EETTEEEEEECC--------------------------------------------CCTTCSCCCCEEEEETTTC----C
T ss_pred             ecCCEEEEeCCC--------------------------------------------EEeccCCCcEEEEEEcCCC----e
Confidence            766555555421                                            1111111223333332211    0


Q ss_pred             eeee----ecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        348 AIMP----ITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       348 ~~~~----~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                      ....    ...+..|.+|++|+.+ .||++|...++|.+++++|.
T Consensus       280 ~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          280 IIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred             EEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence            1111    1245679999999975 89999999999999998874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.81  E-value=5.3e-17  Score=152.10  Aligned_cols=269  Identities=14%  Similarity=0.079  Sum_probs=194.6

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEe
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCT  157 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~  157 (440)
                      |.+|++|+. ++||+++...+.|.+++.+ .....+         .+......|.+ ++|.. ++||++    ++|.+.+
T Consensus        22 p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~---------~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           22 PYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEF---------EVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLS   89 (300)
T ss_dssp             EEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEE---------ECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEEC
T ss_pred             cceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEE---------ECCCCCCcceeEEECCC-CCEEEEecCCCeEEEEC
Confidence            999999976 7799999887888877655 222111         12234568999 99954 569988    6799999


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY  237 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~  237 (440)
                      .+|+............|.+|++|+ .|.||+++...  ..|.+.+.+|.............|.+|++|+ .++||+++..
T Consensus        90 ~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~  165 (300)
T 2qc5_A           90 KKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNG--DRIGKLTADGTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ  165 (300)
T ss_dssp             TTSCEEEEECSSTTCCEEEEEECS-TTCEEEEETTT--TEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSSEEEEETT
T ss_pred             CCCCeEEecCCCCCCCCccceECC-CCCEEEEccCC--CeEEEECCCCCEEEccCCCCCCCceeEEECC-CCCEEEEecC
Confidence            997664433333457899999998 68999999765  5899999986544322233467899999995 5569999988


Q ss_pred             CCcEEEEEccCCCcEEEecCCccCceeeeeEec-CEEEEEecCCCeEEEEeccCCCceEEEe--cCCCCeEEEEeccCCC
Q psy14258        238 LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNSDDYETIA--NFSRPFAIHIYHRQKQ  314 (440)
Q Consensus       238 ~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~~~--~~~~p~~~~v~~~~~q  314 (440)
                      .+.|.+++.+|.... +........|.+++++. +.||+++...+.|.+++. +++......  ....|.++.+.     
T Consensus       166 ~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d-----  238 (300)
T 2qc5_A          166 NNSIGRITNTGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG-----  238 (300)
T ss_dssp             TTEEEEECTTCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-----
T ss_pred             CCeEEEECCCCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC-----
Confidence            889999998765443 32222367899999985 499999998889999998 555444322  34467787766     


Q ss_pred             CCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        315 PDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       315 p~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                           +++.|++++...+.|.+++.++.    -....+. ....|.++++|+. +.||+++. . .|.+++++
T Consensus       239 -----~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          239 -----KNSEIWFTEWGANQIGRITNDNT----IQEYQLQTENAEPHGITFGKD-GSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             -----STTCEEEEETTTTEEEEECTTSC----EEEEECCSTTCCCCCEEECTT-SCEEEECS-S-EEEEEEEC
T ss_pred             -----CCCCEEEeccCCCeEEEECCCCc----EEEEECCccCCccceeEeCCC-CCEEEEcc-C-ceEEeCCC
Confidence                 35669999876689999988544    1222222 3567999999986 55999987 5 99998764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.80  E-value=3.3e-17  Score=156.44  Aligned_cols=245  Identities=14%  Similarity=0.168  Sum_probs=178.0

Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-------------------CccCceEEEEeCCC
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH-------------------KIVYPYGVTVDFPT  228 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-------------------~~~~P~gl~vD~~~  228 (440)
                      ...+..|++|++|+ .|.++|++...  ++|.+.+.++...+.+...                   ....|.||++|+.+
T Consensus        15 ~g~~~~p~~i~~d~-~g~~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           15 EAPSYAPNSFTFDS-TNKGFYTSVQD--GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             ECSSSCCCCEECCT-TCSSEEEECTT--SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CCccCCceEEEEcC-CCCEEEEEcCC--CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            34578999999999 48888888665  6999999887654444321                   13479999999668


Q ss_pred             CEEEEEeCCCCcEEEEEccCCCcEEEec---CCccCceeeeeEec--CEEEEEecC-----------------CCeEEEE
Q psy14258        229 KHVYWVDTYLDFIDRINYDGTDRKTIRK---GFPVQNLYDITVFE--NNLFVTSWR-----------------NQSIIRV  286 (440)
Q Consensus       229 ~~ly~~d~~~~~i~~~~~dG~~~~~i~~---~~~~~~p~gl~~~~--~~ly~td~~-----------------~~~i~~~  286 (440)
                      ++||++|... .|.+++.++...+.+..   +..+..|.+++++.  +.||++|..                 .+.|+++
T Consensus        92 g~l~v~d~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           92 NQLYIVDCYY-HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             TEEEEEETTT-EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             CcEEEEECCC-CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            8999999764 48888887655555543   22356799999986  499999975                 2678998


Q ss_pred             eccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCc-eeeeeecCCCCceEEEEE
Q psy14258        287 NKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTE-QAIMPITDLKRPSVIDYH  364 (440)
Q Consensus       287 ~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~-~~~~~~~~~~~p~~l~~d  364 (440)
                      +..+++...+...+..|.++++.          ++ .+||+++...++|+++++++..... .......   .|.++++|
T Consensus       171 d~~~~~~~~~~~~~~~p~gia~~----------~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---gP~gi~~d  237 (322)
T 2fp8_A          171 DPSTKETTLLLKELHVPGGAEVS----------ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---NPGNIKRN  237 (322)
T ss_dssp             ETTTTEEEEEEEEESCCCEEEEC----------TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---SEEEEEEC
T ss_pred             eCCCCEEEEeccCCccCcceEEC----------CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---CCCCeEEC
Confidence            87666544455566778888776          34 5799999877899999998641111 1111222   29999999


Q ss_pred             cCCCEEEEEECC----------CCeEEEEecCCCCeEEEEECC---CCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCC
Q psy14258        365 EKEEYIYYAELT----------SYVIERRKMFGRGKEVVIDTG---IYNVEGMAVDWMANNLYWTDAGIGTINVAKISDF  431 (440)
Q Consensus       365 ~~~~~vy~~d~~----------~~~I~r~~~~g~~~~~~~~~~---~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~  431 (440)
                      +.+ .||+++..          .+.|.+++.+|...+.+...+   +..|.+++.+  +++||+++...++|.+++++.+
T Consensus       238 ~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          238 ADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred             CCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence            965 59999866          578999999986555544322   5678999886  7899999999999999999874


Q ss_pred             e
Q psy14258        432 S  432 (440)
Q Consensus       432 ~  432 (440)
                      .
T Consensus       315 ~  315 (322)
T 2fp8_A          315 G  315 (322)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=1.3e-16  Score=149.07  Aligned_cols=241  Identities=11%  Similarity=0.029  Sum_probs=178.7

Q ss_pred             ccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEc-----CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEE
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAID-----LNLSKPRGIALDPTSGYMFFTKWGATRPMLER  200 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~-----~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r  200 (440)
                      ..+..|.+ |+|..+ +||++    ++|.+.+.+|.....+..     ..+..|.+|++++..|.||+++.... .+|.+
T Consensus        27 g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~-~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-HQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-CEEEE
T ss_pred             CccCCCceEEECCCC-CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC-CEEEE
Confidence            35678999 999765 59998    689999999876655532     13468999999756899999996422 58999


Q ss_pred             EeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecC
Q psy14258        201 SLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWR  279 (440)
Q Consensus       201 ~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~  279 (440)
                      .+.+|.....+.......|.+|++|+ .++||+++...+.|..++.+|.....+.....+..|.+|+++.+ .+|+++..
T Consensus       105 ~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          105 YNQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             ECTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             ECCCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            99888765544333456899999995 56799999988999999988876665543223678999999864 89999988


Q ss_pred             CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCce
Q psy14258        280 NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPS  359 (440)
Q Consensus       280 ~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~  359 (440)
                      ++.|.+++.. ++.                                        +..+...+            .+..|.
T Consensus       184 ~~~i~~~~~~-g~~----------------------------------------~~~~~~~g------------~~~~p~  210 (286)
T 1q7f_A          184 AHCVKVFNYE-GQY----------------------------------------LRQIGGEG------------ITNYPI  210 (286)
T ss_dssp             GTEEEEEETT-CCE----------------------------------------EEEESCTT------------TSCSEE
T ss_pred             CCEEEEEcCC-CCE----------------------------------------EEEEccCC------------ccCCCc
Confidence            8888877752 211                                        11110000            134689


Q ss_pred             EEEEEcCCCEEEEEECCCC-eEEEEecCCCCeEEEEE-CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        360 VIDYHEKEEYIYYAELTSY-VIERRKMFGRGKEVVID-TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       360 ~l~~d~~~~~vy~~d~~~~-~I~r~~~~g~~~~~~~~-~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +|++|+. +.+|+++...+ .|.+.+.+|.....+.. .....|.+||+|+ .++||+++. .++|.++++..
T Consensus       211 ~i~~d~~-G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs~~-~~~v~v~~~~~  280 (286)
T 1q7f_A          211 GVGINSN-GEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMD-DGSVVLASK-DYRLYIYRYVQ  280 (286)
T ss_dssp             EEEECTT-CCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEET-TTEEEEEET-TTEEEEEECSC
T ss_pred             EEEECCC-CCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECC-CCcEEEECC-CCeEEEEEccc
Confidence            9999986 46999998886 99999998865555543 2234689999997 457999975 68999999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=8.1e-17  Score=154.24  Aligned_cols=243  Identities=9%  Similarity=0.066  Sum_probs=177.8

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC-CCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG-TERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD  250 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG-~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~  250 (440)
                      ..|++|+++.  ++||++....  ..|.+.+... .....+  .....|.+|++++. ++||+++...+.|..++.....
T Consensus        44 ~~~~~i~~~~--~~lyv~~~~~--~~v~viD~~t~~~~~~i--~~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           44 DVAQSMVIRD--GIGWIVVNNS--HVIFAIDINTFKEVGRI--TGFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYE  116 (328)
T ss_dssp             SCEEEEEEET--TEEEEEEGGG--TEEEEEETTTCCEEEEE--ECCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTE
T ss_pred             ccceEEEEEC--CEEEEEEcCC--CEEEEEECcccEEEEEc--CCCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCe
Confidence            4689999975  8999999865  5899999873 332333  24578999999744 5999999778899999986544


Q ss_pred             cE-EEecCC---ccCceeeeeEecCEEEEEecC-CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEE
Q psy14258        251 RK-TIRKGF---PVQNLYDITVFENNLFVTSWR-NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLL  325 (440)
Q Consensus       251 ~~-~i~~~~---~~~~p~gl~~~~~~ly~td~~-~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~  325 (440)
                      .. .+..+.   ....|.+|++.++.||++++. .+.|..++..+++....+.....|.++.+.          +++.++
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~----------~dG~l~  186 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMD----------KYNKMW  186 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEEC----------TTSEEE
T ss_pred             EEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEc----------CCCCEE
Confidence            33 333221   123799999988899999994 889999999888766655544567777665          456677


Q ss_pred             eecCCc----------cEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeE--EE
Q psy14258        326 YAKGKP----------AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKE--VV  393 (440)
Q Consensus       326 ~~~~~~----------~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~--~~  393 (440)
                      ++....          +.|.+++.+.. .. ...+.+.....|.++++++.++.+|+++.   .|+++++......  .+
T Consensus       187 v~~~~~~~~~~~~~~~~~v~~id~~t~-~v-~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~  261 (328)
T 3dsm_A          187 TITDGGYEGSPYGYEAPSLYRIDAETF-TV-EKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPF  261 (328)
T ss_dssp             EEBCCBCTTCSSCBCCCEEEEEETTTT-EE-EEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCS
T ss_pred             EEECCCccCCccccCCceEEEEECCCC-eE-EEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeee
Confidence            776643          68999997655 11 11233332347999999999999999975   8999998753321  12


Q ss_pred             EECCCCCeeeEEEecCCCcEEEEe----CCCCeEEEEEeCCCeeeEEe
Q psy14258        394 IDTGIYNVEGMAVDWMANNLYWTD----AGIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       394 ~~~~~~~~~glAvD~~~~~lYwtd----~~~~~I~~~~~~g~~~~~~l  437 (440)
                      +..+...|.|||+|+.+++||+++    ...++|.+++++| +..+.+
T Consensus       262 ~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g-~~~~~i  308 (328)
T 3dsm_A          262 LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG-KLIDEF  308 (328)
T ss_dssp             BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC-CEEEEE
T ss_pred             ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC-CEEEEE
Confidence            222246899999999899999999    7889999999999 444444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=1.9e-17  Score=153.22  Aligned_cols=233  Identities=13%  Similarity=0.193  Sum_probs=171.6

Q ss_pred             ccce-eeeecCCcEEE-e----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        135 DGTE-RFPMVTHKIVY-P----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~-~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      .|.+ ++|..+ +||+ +    ++|.+.+.++.....+....+..|.+|++|+ .|.||+++. .  .+|.+.+.+|...
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~--~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-N--NRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-T--TEEEEECTTCSCC
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-C--CEEEEEeCCCceE
Confidence            8999 999865 5999 6    6899988876654443334567899999999 588999997 3  6999999998766


Q ss_pred             eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec-CEEEEEecCCCeEEEEe
Q psy14258        209 FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE-NNLFVTSWRNQSIIRVN  287 (440)
Q Consensus       209 ~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~  287 (440)
                      ..+.......|.+|++|+ .++||+++...+.|.+++... ..........+..|.+|+++. +.||+++..++.|.+++
T Consensus       100 ~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS-KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC-CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC-ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence            544334567899999995 667999998888999996433 333322222256899999985 48999999889999999


Q ss_pred             ccCCCceEEE-ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcC
Q psy14258        288 KFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEK  366 (440)
Q Consensus       288 ~~~g~~~~~~-~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~  366 (440)
                      ..++...... ..+..|.++.+.          +++.|++++...+.|.+++.++. ..  ...+..++..|.++++|+.
T Consensus       178 ~~~~~~~~~~~~~~~~p~~i~~d----------~~g~l~v~~~~~~~v~~~~~~~~-~~--~~~~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          178 AESNNQVVLPFTDITAPWGIAVD----------EAGTVYVTEHNTNQVVKLLAGST-TS--TVLPFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEEC----------TTCCEEEEETTTSCEEEECTTCS-CC--EECCCCSCSCEEEEEECTT
T ss_pred             cCCCceEeecccCCCCceEEEEC----------CCCCEEEEECCCCcEEEEcCCCC-cc--eeeccCCCCCceeEEECCC
Confidence            7654433322 234568888776          45689999877789999988765 21  1233345678999999987


Q ss_pred             CCEEEEEECCCCeEEEEecCCC
Q psy14258        367 EEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       367 ~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                      + .+|+++...++|.+++++..
T Consensus       245 g-~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          245 R-TVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             C-CEEEEEGGGTEEEEECCCGG
T ss_pred             C-CEEEEECCCCEEEEEcCCCc
Confidence            6 59999999999999988753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=1.5e-15  Score=141.98  Aligned_cols=247  Identities=19%  Similarity=0.192  Sum_probs=177.9

Q ss_pred             EcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEc
Q psy14258        167 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINY  246 (440)
Q Consensus       167 ~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~  246 (440)
                      +......|.+|++|+ .|.||+++...  +.|.+.+.+|.............|.+|++| ..++||+++...+.|.+++.
T Consensus        10 ~~~~~~~~~~i~~d~-~g~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           10 LTNQDTGPYGITVSD-KGKVWITQHKA--NMISCINLDGKITEYPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             CCSSSCCEEEEEECT-TSCEEEEETTT--TEEEEECTTCCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT
T ss_pred             CCCcCCCccceEECC-CCCEEEEecCC--CcEEEEcCCCCeEEecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECC
Confidence            334567899999998 68999998754  589999998443222222235679999999 56789999988889999998


Q ss_pred             cCCCcEEEecCCccCceeeeeEec-CEEEEEecCCCeEEEEeccCCCceEEEe--cCCCCeEEEEeccCCCCCCCCCcee
Q psy14258        247 DGTDRKTIRKGFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNSDDYETIA--NFSRPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       247 dG~~~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~~~--~~~~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      +|.. +.+........|.+++++. +.||+++...+.|.+++. +++......  ....|.++.+.          +++.
T Consensus        86 ~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~----------~~g~  153 (299)
T 2z2n_A           86 KGII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG----------SDNA  153 (299)
T ss_dssp             TSCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC----------TTSC
T ss_pred             CCcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc----------CCCC
Confidence            8653 3332221256899999985 599999988889999998 565444322  23357777665          4567


Q ss_pred             EEeecCCccEEEEEEcCCCCCCceeeeee-cCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCee
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVE  402 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~  402 (440)
                      |++++...+.|.+++.++.    -..... .....|.++++|+.+ .+|+++...+.|++++++|.............|.
T Consensus       154 l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~  228 (299)
T 2z2n_A          154 LWFTENQNNAIGRITESGD----ITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPH  228 (299)
T ss_dssp             EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE
T ss_pred             EEEEeCCCCEEEEEcCCCc----EEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECCCCcEEEEECCCCCCCce
Confidence            8888766688999988433    112222 235679999999874 5999998899999999965422221223457899


Q ss_pred             eEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEE
Q psy14258        403 GMAVDWMANNLYWTDAGIGTINVAKISDFSIRKV  436 (440)
Q Consensus       403 glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~  436 (440)
                      +|++|.. ++||+++...+.|.+++++| +.+..
T Consensus       229 ~i~~~~~-g~l~v~~~~~~~i~~~d~~g-~~~~~  260 (299)
T 2z2n_A          229 AITAGAG-IDLWFTEWGANKIGRLTSNN-IIEEY  260 (299)
T ss_dssp             EEEECST-TCEEEEETTTTEEEEEETTT-EEEEE
T ss_pred             eEEECCC-CCEEEeccCCceEEEECCCC-ceEEE
Confidence            9999975 57999998889999999987 54443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.75  E-value=5.3e-16  Score=147.02  Aligned_cols=229  Identities=11%  Similarity=0.063  Sum_probs=161.6

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCC
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGT  249 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~  249 (440)
                      ..|.++++|+ +|.|||+|...  ++|.+.+.+|.... .... ...|.||++|+ .++||++|...+  .|.+++....
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~--~~I~~~d~~g~~~~-~~~~-~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEV--GEIVSITPDGNQQI-HATV-EGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTT--TEEEEECTTCCEEE-EEEC-SSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECC-CCCEEEEeCCC--CeEEEECCCCceEE-EEeC-CCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCC
Confidence            5799999999 68899999775  59999999985432 3332 35799999995 466999996644  4888775444


Q ss_pred             CcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEE-E----------ecCCCCeEEEEeccCCCCCC
Q psy14258        250 DRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYET-I----------ANFSRPFAIHIYHRQKQPDA  317 (440)
Q Consensus       250 ~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~-~----------~~~~~p~~~~v~~~~~qp~~  317 (440)
                      ..+.+........|.|+++..+ .+|++|..++.|++++..+++.... .          ..+..|.++  .        
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s--------  175 (306)
T 2p4o_A          106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K--------  175 (306)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E--------
T ss_pred             eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C--------
Confidence            4555443222566888886544 8999999899999999765421111 1          122245555  1        


Q ss_pred             CCC-ceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEE-EE
Q psy14258        318 LKP-STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVV-ID  395 (440)
Q Consensus       318 ~~~-~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~-~~  395 (440)
                        + +.+||+++...++|.++++++.+...... .+..+..|.+|++|+.+ .+|+++...++|.+++.+|....+. +.
T Consensus       176 --~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~-~~~~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~  251 (306)
T 2p4o_A          176 --RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE-IFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAE  251 (306)
T ss_dssp             --EETTEEEEEETTTTEEEEEEBCTTSCBCCCE-EEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGG
T ss_pred             --cCCCEEEEEeCCCCEEEEEEeCCCCCCCccE-EEeccCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecc
Confidence              2 36899999988999999998632221111 12224579999999865 6999999999999999987432221 22


Q ss_pred             CCCCCeeeEEEe---cCCCcEEEEeCCC
Q psy14258        396 TGIYNVEGMAVD---WMANNLYWTDAGI  420 (440)
Q Consensus       396 ~~~~~~~glAvD---~~~~~lYwtd~~~  420 (440)
                      .++..|.++|++   ..++.||+++...
T Consensus       252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cccCCceEEEEecccCCCCEEEEECCCC
Confidence            356789999998   6789999998753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=2.4e-15  Score=140.49  Aligned_cols=237  Identities=12%  Similarity=0.136  Sum_probs=174.5

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-----ceEEEE
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-----EAIYFC  156 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-----~~I~~~  156 (440)
                      |.++++++. +.||+++...++|.+.+.++.....+.....     ....+..|.+ |++...++||++     +.|.+.
T Consensus        32 p~~v~~~~~-g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~-----~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           32 PSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGK-----RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             EEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCBSS-----STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CceEEECCC-CCEEEEECCCCEEEEECCCCcEEEEecccCC-----CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            999999976 6799999988888887766443222210000     0123567999 997677889998     479999


Q ss_pred             ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe-cCccCceEEEEeCCCCEEEEEe
Q psy14258        157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d  235 (440)
                      +.+|.....+.......|.+|++|+ .|.||+++...  .+|.+.+.+|.....+.. ..+..|.+|++|+ .++||+++
T Consensus       106 d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~  181 (286)
T 1q7f_A          106 NQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKV--MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISD  181 (286)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTT--TEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEE
T ss_pred             CCCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCC--CEEEEEcCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEE
Confidence            9888877666444567899999999 68899999775  589999998875554432 2456899999995 57899999


Q ss_pred             CCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCC-eEEEEeccCCCceEEEe-cC--CCCeEEEEec
Q psy14258        236 TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQ-SIIRVNKFNSDDYETIA-NF--SRPFAIHIYH  310 (440)
Q Consensus       236 ~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~-~i~~~~~~~g~~~~~~~-~~--~~p~~~~v~~  310 (440)
                      ...+.|..++.+|.....+.....+..|.+|+++.+ +||+++..++ .|.+++. +|+....+. ..  ..|.++.+. 
T Consensus       182 ~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~-  259 (286)
T 1q7f_A          182 NRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM-  259 (286)
T ss_dssp             GGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE-
T ss_pred             CCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC-
Confidence            988999999998876655543222578999999865 9999999886 9999986 455544433 22  247778776 


Q ss_pred             cCCCCCCCCCceeEEeecCCccEEEEEEcCC
Q psy14258        311 RQKQPDALKPSTFLLYAKGKPAIIKGLTFKR  341 (440)
Q Consensus       311 ~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~  341 (440)
                               +++.|++++. .++|+.+.+..
T Consensus       260 ---------~~g~l~vs~~-~~~v~v~~~~~  280 (286)
T 1q7f_A          260 ---------DDGSVVLASK-DYRLYIYRYVQ  280 (286)
T ss_dssp             ---------TTTEEEEEET-TTEEEEEECSC
T ss_pred             ---------CCCcEEEECC-CCeEEEEEccc
Confidence                     4667888864 57888777644

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.73  E-value=7.9e-15  Score=138.89  Aligned_cols=224  Identities=13%  Similarity=0.058  Sum_probs=162.5

Q ss_pred             cccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        134 LDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      ..|++ |+|.. ++|||+    ++|.+.+.+|.....+ . .-..|.+|++|+ .|.||+++.+.+..+|.+.+......
T Consensus        32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~~~~~~-~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQQIHA-T-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEEE-E-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCC-CCEEEEeCCCCeEEEECCCCceEEEE-e-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE
Confidence            68999 99984 569999    7999999999754433 2 235799999999 57899999765313588877543333


Q ss_pred             eeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEe--------c-CCccCceeeeeEecCEEEEEec
Q psy14258        209 FPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIR--------K-GFPVQNLYDITVFENNLFVTSW  278 (440)
Q Consensus       209 ~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~--------~-~~~~~~p~gl~~~~~~ly~td~  278 (440)
                      +.+.. .....|+|++++ .++++|++|...+.|++++.++...++..        . ...+..|.||+.++++||+++.
T Consensus       108 ~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~  186 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT  186 (306)
T ss_dssp             EEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET
T ss_pred             EEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC
Confidence            33433 235678999986 67899999988899999998754322221        0 1135689999777889999999


Q ss_pred             CCCeEEEEeccC-CC--ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeee-ee-c
Q psy14258        279 RNQSIIRVNKFN-SD--DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIM-PI-T  353 (440)
Q Consensus       279 ~~~~i~~~~~~~-g~--~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~-~~-~  353 (440)
                      .+++|++++... |+  ...++..+..|.++++.          +++.||+++...++|.+++.++.    ...+ .+ .
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd----------~dG~l~va~~~~~~V~~~~~~G~----~~~~~~~~~  252 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD----------VEGNLYGATHIYNSVVRIAPDRS----TTIIAQAEQ  252 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB----------TTCCEEEECBTTCCEEEECTTCC----EEEEECGGG
T ss_pred             CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEEC----------CCCCEEEEeCCCCeEEEECCCCC----EEEEeeccc
Confidence            999999999754 32  23344445578888777          46789999987799999987755    1111 12 2


Q ss_pred             CCCCceEEEEE---cCCCEEEEEECC
Q psy14258        354 DLKRPSVIDYH---EKEEYIYYAELT  376 (440)
Q Consensus       354 ~~~~p~~l~~d---~~~~~vy~~d~~  376 (440)
                      .+..|.+++|+   +.++.||+++..
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ccCCceEEEEecccCCCCEEEEECCC
Confidence            35689999998   778999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.71  E-value=4e-15  Score=141.92  Aligned_cols=243  Identities=12%  Similarity=0.090  Sum_probs=167.4

Q ss_pred             eeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcC-------------------CCCCceEEEEcCCCC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDL-------------------NLSKPRGIALDPTSG  184 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~-------------------~~~~P~~iavd~~~g  184 (440)
                      +...+..|++ |+|.. +++||+    ++|.+.+.++...+.+...                   ....|.+|++|+..|
T Consensus        14 ~~g~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             EECSSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             cCCccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            3345788999 99986 455555    7899999887655444321                   124799999998679


Q ss_pred             eEEEEEcCCCCCcEEEEeCCCCCceeEEec----CccCceEEEEeCCCCEEEEEeCCC-----------------CcEEE
Q psy14258        185 YMFFTKWGATRPMLERSLLDGTERFPMVTH----KIVYPYGVTVDFPTKHVYWVDTYL-----------------DFIDR  243 (440)
Q Consensus       185 ~lywtd~~~~~~~I~r~~~dG~~~~~l~~~----~~~~P~gl~vD~~~~~ly~~d~~~-----------------~~i~~  243 (440)
                      .||+++..   ..|.+.+.++...+.+...    .+..|+++++|+..++||++|...                 +.|.+
T Consensus        93 ~l~v~d~~---~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           93 QLYIVDCY---YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             EEEEEETT---TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             cEEEEECC---CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            99999977   3699999886544444321    245799999995377999999652                 57888


Q ss_pred             EEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCC--ceEEEecCCCCeEEEEeccCCCCCCCC
Q psy14258        244 INYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSD--DYETIANFSRPFAIHIYHRQKQPDALK  319 (440)
Q Consensus       244 ~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~--~~~~~~~~~~p~~~~v~~~~~qp~~~~  319 (440)
                      ++.++...+.+..+  +..|.||++..+  .||++|..+++|++++..+..  ..+++.....|.++.+.          
T Consensus       170 ~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d----------  237 (322)
T 2fp8_A          170 YDPSTKETTLLLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRN----------  237 (322)
T ss_dssp             EETTTTEEEEEEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEEC----------
T ss_pred             EeCCCCEEEEeccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEEC----------
Confidence            88776655555443  678999999854  799999999999999876432  22333222238888766          


Q ss_pred             CceeEEeecCC----------ccEEEEEEcCCCCCCceeeeeecC---CCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        320 PSTFLLYAKGK----------PAIIKGLTFKRDGTTEQAIMPITD---LKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       320 ~~~~l~~~~~~----------~~~I~~i~~~~~~~~~~~~~~~~~---~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      +++.|++++..          .+.|.+++.++. ..  ..+....   +..|.+++++  ++.||+++...+.|.+++++
T Consensus       238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~-~~--~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN-IL--EVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC-EE--EEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC-
T ss_pred             CCCCEEEEecCcccccccCCCccEEEEECCCCC-EE--EEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecc
Confidence            46678888754          467888887655 11  1122222   4567888774  68999999999999999988


Q ss_pred             CCCeEE
Q psy14258        387 GRGKEV  392 (440)
Q Consensus       387 g~~~~~  392 (440)
                      .....+
T Consensus       313 ~~~~~~  318 (322)
T 2fp8_A          313 KKGNSF  318 (322)
T ss_dssp             ------
T ss_pred             cccCcc
Confidence            654433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=3.8e-14  Score=135.61  Aligned_cols=245  Identities=9%  Similarity=-0.020  Sum_probs=175.7

Q ss_pred             ccce-eeeecCCcEEEe----ceEEEEecCC-ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        135 DGTE-RFPMVTHKIVYP----EAIYFCTHYM-EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~----~~I~~~~~dg-~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      .|.+ ++|  +++||++    +.|.+.+... +....+ . ....|++|++++ .|+||+++...  .+|.+.++.....
T Consensus        45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~~~-~g~lyv~~~~~--~~v~~iD~~t~~~  117 (328)
T 3dsm_A           45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHFLS-DEKAYVTQIWD--YRIFIINPKTYEI  117 (328)
T ss_dssp             CEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEEEE-TTEEEEEEBSC--SEEEEEETTTTEE
T ss_pred             cceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEEeC-CCeEEEEECCC--CeEEEEECCCCeE
Confidence            4777 775  6889999    6899999874 443444 3 457899999987 47999999543  5899999875433


Q ss_pred             eeEEecC-----ccCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCC-cEEEecCCccCceeeeeEec-CEEEEEecCC
Q psy14258        209 FPMVTHK-----IVYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTD-RKTIRKGFPVQNLYDITVFE-NNLFVTSWRN  280 (440)
Q Consensus       209 ~~l~~~~-----~~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~  280 (440)
                      ...+...     ...|.+|+++  +++||+++.+ .+.|..++..... ...+..   ...|.++++.. +.+|++....
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~---g~~p~~i~~~~dG~l~v~~~~~  192 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTI---GIQPTSLVMDKYNKMWTITDGG  192 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEEC---SSCBCCCEECTTSEEEEEBCCB
T ss_pred             EEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc---CCCccceEEcCCCCEEEEECCC
Confidence            3222221     1279999995  8999999984 7899999986443 333333   34799999986 4999998865


Q ss_pred             ----------CeEEEEeccCCCceEEEec--CCCCeEEEEeccCCCCCCCCC-ceeEEeecCCccEEEEEEcCCCCCCce
Q psy14258        281 ----------QSIIRVNKFNSDDYETIAN--FSRPFAIHIYHRQKQPDALKP-STFLLYAKGKPAIIKGLTFKRDGTTEQ  347 (440)
Q Consensus       281 ----------~~i~~~~~~~g~~~~~~~~--~~~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~~~~I~~i~~~~~~~~~~  347 (440)
                                +.|++++..+++....+.-  ...|.++.+.          | +.+||+++.   .|.+++++.......
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~----------~d~~~lyv~~~---~v~~~d~~t~~~~~~  259 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN----------GTRDTLYWINN---DIWRMPVEADRVPVR  259 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC----------TTSCEEEEESS---SEEEEETTCSSCCSS
T ss_pred             ccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe----------cCCCEEEEEcc---EEEEEECCCCceeee
Confidence                      7899999887765544432  2368888877          3 367888875   788888865411110


Q ss_pred             eeeeecCCCCceEEEEEcCCCEEEEEE----CCCCeEEEEecCCCCeEEEEECCCCCeeeEEEe
Q psy14258        348 AIMPITDLKRPSVIDYHEKEEYIYYAE----LTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVD  407 (440)
Q Consensus       348 ~~~~~~~~~~p~~l~~d~~~~~vy~~d----~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD  407 (440)
                      ..++. +...|.++++|+.++.||+++    ...++|++++++|.....+ ..| ..|.++|+-
T Consensus       260 ~~~~~-~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i-~~G-~~P~~~~~~  320 (328)
T 3dsm_A          260 PFLEF-RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF-YVG-IIPGAFCWK  320 (328)
T ss_dssp             CSBCC-CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEE-EEE-ESEEEEEEE
T ss_pred             eeecC-CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEE-Eec-cCcceEEEe
Confidence            11111 146899999999899999999    7889999999997655444 333 579999874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.69  E-value=9.8e-15  Score=137.56  Aligned_cols=194  Identities=12%  Similarity=0.128  Sum_probs=144.0

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe--ceEEEEecC
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHY  159 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~d  159 (440)
                      +.+..+++.++.|||+|...++|++.+.++.....           + ..-..|.+ ++|+.++ ||++  ..|.+.+.+
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-----------~-~~~~~~~~i~~~~dG~-l~v~~~~~l~~~d~~   81 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-----------V-TMDAPVSSVALRQSGG-YVATIGTKFCALNWK   81 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-----------E-ECSSCEEEEEEBTTSS-EEEEETTEEEEEETT
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-----------E-eCCCceEEEEECCCCC-EEEEECCeEEEEECC
Confidence            88999999899999999999999998876543221           1 11246888 9998766 7777  789999998


Q ss_pred             CceEEEEEcC----CCCCceEEEEcCCCCeEEEEEcCC---------CCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        160 MEHCMIAIDL----NLSKPRGIALDPTSGYMFFTKWGA---------TRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       160 g~~~~~~~~~----~~~~P~~iavd~~~g~lywtd~~~---------~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                      +...+.+...    ....|.++++|| .|.||+++...         ...+|++.+.+|....  +...+..|+|+++++
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~pngi~~sp  158 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDISNGLDWSL  158 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESBEEEEEECT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--EeeccccccceEEcC
Confidence            7666555542    234589999999 68899987532         1247999998875433  334577899999999


Q ss_pred             CCCEEEEEeCCCCcEEEEEcc---CC--CcEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCC
Q psy14258        227 PTKHVYWVDTYLDFIDRINYD---GT--DRKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~d---G~--~~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~  292 (440)
                      .++.|||+|...++|.+++++   |.  +.+.+.. ......|.|++++.+ +||++.+..+.|.++++.+|+
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            899999999999999999875   22  1233332 112357999999854 999999988888888876554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.68  E-value=2.6e-13  Score=129.81  Aligned_cols=266  Identities=9%  Similarity=0.055  Sum_probs=185.2

Q ss_pred             EEEEEeeecccEEEEEEcC------CCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----c
Q psy14258         83 AIYFCTHYMEHCMIAIDLN------LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----E  151 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~------~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~  151 (440)
                      +.++++++.+++||+++..      .+.|+.++.......        ..  + .....|.+ ++++.++.+|++    +
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~--------~~--~-~~~~~~~~~~~s~dg~~l~v~~~~~~  111 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT--------QA--I-HNDLKPFGATINNTTQTLWFGNTVNS  111 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE--------EE--E-EESSCCCSEEEETTTTEEEEEETTTT
T ss_pred             ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE--------EE--E-ecCCCcceEEECCCCCEEEEEecCCC
Confidence            8899999999999999975      456666555432211        11  1 22346899 999999989998    6


Q ss_pred             eEEEEecCCceE-EEEEcCCCC--------CceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEE
Q psy14258        152 AIYFCTHYMEHC-MIAIDLNLS--------KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGV  222 (440)
Q Consensus       152 ~I~~~~~dg~~~-~~~~~~~~~--------~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl  222 (440)
                      .|.+.+++.... ..+-.....        .|.+++++|..++||+++.+.. .+|...+++.......+......|.++
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-SVIWVVDGGNIKLKTAIQNTGKMSTGL  190 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-CEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-ceEEEEcCCCCceEEEecCCCCccceE
Confidence            899999875444 333222111        3899999998888999997544 689999987554433333233459999


Q ss_pred             EEeCCCCEEEEEeCCCCcEEEEEccCCCcE-EEecCC--ccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        223 TVDFPTKHVYWVDTYLDFIDRINYDGTDRK-TIRKGF--PVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       223 ~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~-~i~~~~--~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      ++++.+++||+++. .+.|..++....... .+..+.  ....|.++++.  ++.+|+++...+.|..++..+++....+
T Consensus       191 ~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  269 (353)
T 3vgz_A          191 ALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV  269 (353)
T ss_dssp             EEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            99999999999975 678888887544333 332211  13457788887  4489999988899999998777765544


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT  376 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~  376 (440)
                      . ...|.++.+.          |+ .+|++++...+.|..+++...    .....+.....|.++++++.++.+|++...
T Consensus       270 ~-~~~~~~~~~s----------~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          270 A-APESLAVLFN----------PARNEAYVTHRQAGKVSVIDAKSY----KVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             E-CSSCCCEEEE----------TTTTEEEEEETTTTEEEEEETTTT----EEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             E-cCCCceEEEC----------CCCCEEEEEECCCCeEEEEECCCC----eEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            3 2335555444          23 568888876789999988655    233233333478999999999999999754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.67  E-value=1.8e-14  Score=139.20  Aligned_cols=247  Identities=13%  Similarity=0.057  Sum_probs=172.7

Q ss_pred             eeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEE-----cCCCCCceEEEEcCC---CCeEEEEEcC-CCC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAI-----DLNLSKPRGIALDPT---SGYMFFTKWG-ATR  195 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~-----~~~~~~P~~iavd~~---~g~lywtd~~-~~~  195 (440)
                      +..++..|.+ |+++.++ ||++   ++|.+.+.+|.  +.+.     ......|.||+++|.   +|+||+++.. ...
T Consensus        24 va~~l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~  100 (354)
T 3a9g_A           24 VASDLEVPWSIAPLGGGR-YLVTERPGRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG  100 (354)
T ss_dssp             EECSCSCEEEEEEEETTE-EEEEETTTEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred             EeCCCCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence            4567899999 9998765 9999   79999988886  3332     234567999999997   7999999863 111


Q ss_pred             ----CcEEEEeCCCC-----CceeEEe----cCccCceEEEEeCCCCEEEEEeCC-------------CCcEEEEEccCC
Q psy14258        196 ----PMLERSLLDGT-----ERFPMVT----HKIVYPYGVTVDFPTKHVYWVDTY-------------LDFIDRINYDGT  249 (440)
Q Consensus       196 ----~~I~r~~~dG~-----~~~~l~~----~~~~~P~gl~vD~~~~~ly~~d~~-------------~~~i~~~~~dG~  249 (440)
                          .+|.|.+.++.     ..++++.    .....|++|++++ .++||++...             .++|.+++.+|+
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence                38999999876     2334433    1244689999996 5689999632             358999999997


Q ss_pred             --------CcEEEecCCccCceeeeeEec--CEEEEEecCCCe---EEEEeccCCCc-----------------e-EEE-
Q psy14258        250 --------DRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQS---IIRVNKFNSDD-----------------Y-ETI-  297 (440)
Q Consensus       250 --------~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~---i~~~~~~~g~~-----------------~-~~~-  297 (440)
                              ..++...+  +++|.||+++.  +.||++|...+.   |..+.+  |..                 . ..+ 
T Consensus       180 ~p~~npf~~~~i~a~G--~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~nyGwp~~~g~~~~~~~~~p~~~~~  255 (354)
T 3a9g_A          180 PPADNPFPNSPIWSYG--HRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GGNYGWPLATGKAGRGEFVDPVIDTG  255 (354)
T ss_dssp             CCTTSSSTTCCEEEEC--CSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CCCCCCCCCCcEEEEc--cCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CCcCCCCcccCCCCCCCCcCCEeecC
Confidence                    44555556  88999999996  599999987654   554443  210                 1 111 


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEEEEEcCCCEEEEEECC
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHEKEEYIYYAELT  376 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~  376 (440)
                      .....|.++.++....-|.   .++.|++++...++|.++.+++.+...+....+. ...+|.++++++++ .||+++..
T Consensus       256 ~~~~ap~G~~~y~g~~fp~---~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-~lyv~~~~  331 (354)
T 3a9g_A          256 SETWAPSGASFVHGDMFPG---LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-GILISTSN  331 (354)
T ss_dssp             TCCCCEEEEEECCSSSCGG---GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-CEEEEECT
T ss_pred             CCCcCCcceEEECCCCCcc---cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-cEEEEEeC
Confidence            1123588888886444442   3578999988888999999986522211111222 25689999999965 79999863


Q ss_pred             -CC---------eEEEEecCC
Q psy14258        377 -SY---------VIERRKMFG  387 (440)
Q Consensus       377 -~~---------~I~r~~~~g  387 (440)
                       .+         +|+|+...|
T Consensus       332 ~~G~g~~~~~~g~i~ri~~~g  352 (354)
T 3a9g_A          332 RDGRGSLRAGDDKILKIVSEQ  352 (354)
T ss_dssp             TSSSSCCCTTCSCEEEEEETT
T ss_pred             CCCCcCCCCCCCEEEEEecCC
Confidence             44         899998766

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.67  E-value=6.4e-13  Score=127.12  Aligned_cols=266  Identities=11%  Similarity=0.045  Sum_probs=188.5

Q ss_pred             ccccce-eeeecCCcEEEe--c--------eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEE
Q psy14258        133 LLDGTE-RFPMVTHKIVYP--E--------AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS  201 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~--~--------~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~  201 (440)
                      ...|.+ ++++.++.||++  +        .|.+.++++......+.. -..|.+++++|..++||+++...  ..|...
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~--~~v~~~  116 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVN--SAVTAI  116 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTT--TEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCC--CEEEEE
Confidence            346888 999999999998  2        688888876544333332 24699999999877899999875  589999


Q ss_pred             eCCCCCceeEEecC-c--------cCceEEEEeCCCCEEEEEeC-CCCcEEEEEccCCCcEEEecCCccCceeeeeEec-
Q psy14258        202 LLDGTERFPMVTHK-I--------VYPYGVTVDFPTKHVYWVDT-YLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE-  270 (440)
Q Consensus       202 ~~dG~~~~~l~~~~-~--------~~P~gl~vD~~~~~ly~~d~-~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~-  270 (440)
                      +++.......+... .        ..|.++++++.+++||+++. ..+.|..++............ ....|.++++.. 
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d  195 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDSE  195 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCCEEETT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceEEECCC
Confidence            98654433333321 1        13899999999999999984 467899998865544333331 134588888864 


Q ss_pred             -CEEEEEecCCCeEEEEeccCCCceEEEec-C----CCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCC
Q psy14258        271 -NNLFVTSWRNQSIIRVNKFNSDDYETIAN-F----SRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDG  343 (440)
Q Consensus       271 -~~ly~td~~~~~i~~~~~~~g~~~~~~~~-~----~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~  343 (440)
                       +.||+++. .+.|..++..+++....+.. .    ..|.++.+.          |+ .+|++++...+.|..+++... 
T Consensus       196 g~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s----------~dg~~l~~~~~~~~~v~~~d~~~~-  263 (353)
T 3vgz_A          196 GKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLD----------TARQRAFITDSKAAEVLVVDTRNG-  263 (353)
T ss_dssp             TTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE----------TTTTEEEEEESSSSEEEEEETTTC-
T ss_pred             CCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC----------CCCCEEEEEeCCCCEEEEEECCCC-
Confidence             48999886 78898999877766554432 1    124445554          23 578888876789999988654 


Q ss_pred             CCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC
Q psy14258        344 TTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       344 ~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                         .....+. ...|.+++|++.++++|+++...+.|...++........+..+ ..|.++++++.++.||++...
T Consensus       264 ---~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          264 ---NILAKVA-APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ---CEEEEEE-CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             ---cEEEEEE-cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence               1111111 3457889999999999999998999999998754433334433 579999999989899999754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=1.2e-13  Score=129.76  Aligned_cols=240  Identities=13%  Similarity=0.068  Sum_probs=171.4

Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEc-
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINY-  246 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~-  246 (440)
                      ......|.+++.||..+.|||++...  .+|.+.+.++. .+ .+......|.+|++|+ .++||+++...+.|.+++. 
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~--~~i~~~~~~~~-~~-~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQ--NRTWAWSDDGQ-LS-PEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGG--TEEEEEETTSC-EE-EEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECST
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCC--CEEEEEECCCC-eE-EEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCC
Confidence            34678899999999655699999875  59999999987 43 3444556799999995 6679999988889999998 


Q ss_pred             cCCCcEEEec---CCccCceeeeeEecC-EEEEEec-----------------CCCeEEEEeccCCCceEEEecCCCCeE
Q psy14258        247 DGTDRKTIRK---GFPVQNLYDITVFEN-NLFVTSW-----------------RNQSIIRVNKFNSDDYETIANFSRPFA  305 (440)
Q Consensus       247 dG~~~~~i~~---~~~~~~p~gl~~~~~-~ly~td~-----------------~~~~i~~~~~~~g~~~~~~~~~~~p~~  305 (440)
                      +|. .+.+..   +.....|.+++++.+ .+|++|.                 ..+.|++++.. ++...+......|.+
T Consensus        99 ~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGE-WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             TCC-EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CCc-EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            554 443332   222456888999865 8999875                 24589999875 544444455667888


Q ss_pred             EEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCC-ceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEe
Q psy14258        306 IHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTT-EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRK  384 (440)
Q Consensus       306 ~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~-~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~  384 (440)
                      +.+.          |++.+++++...+.|++++++..+.. ............|.++++|+.+ .+|+++  .+.|.+.+
T Consensus       177 i~~s----------~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~  243 (296)
T 3e5z_A          177 LAFL----------PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLT  243 (296)
T ss_dssp             EEEC----------TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEEC
T ss_pred             EEEC----------CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEEC
Confidence            8765          34333388887789999998743222 1111112234578899999875 599998  78999999


Q ss_pred             cCCCCeEEEEECCCCCeeeEEEe-cCCCcEEEEeCCCCeEEEEEeCCC
Q psy14258        385 MFGRGKEVVIDTGIYNVEGMAVD-WMANNLYWTDAGIGTINVAKISDF  431 (440)
Q Consensus       385 ~~g~~~~~~~~~~~~~~~glAvD-~~~~~lYwtd~~~~~I~~~~~~g~  431 (440)
                      ++|.....+ ..... |..++++ ..++.||++..  +.+.++++..+
T Consensus       244 ~~g~~~~~~-~~~~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~  287 (296)
T 3e5z_A          244 PDGDELGRV-LTPQT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNVR  287 (296)
T ss_dssp             TTSCEEEEE-ECSSC-CCEEEEESTTSCEEEEEET--TEEEEEECSCC
T ss_pred             CCCCEEEEE-ECCCC-ceeEEEECCCCCEEEEEcC--CeEEEEEcccc
Confidence            997644444 33334 9999995 56778999975  57888888764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.66  E-value=2.7e-14  Score=138.00  Aligned_cols=230  Identities=12%  Similarity=0.037  Sum_probs=156.9

Q ss_pred             eeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEE-----cCCCCCceEEEEcCC---CCeEEEEEcCCCC-
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAI-----DLNLSKPRGIALDPT---SGYMFFTKWGATR-  195 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~-----~~~~~~P~~iavd~~---~g~lywtd~~~~~-  195 (440)
                      +..++..|.+ |+++.++ ||++   ++|.+.+ +|+.. .+.     ...+..|.||+++|.   +++||+++..... 
T Consensus        26 va~~l~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~g~~~-~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~  102 (352)
T 2ism_A           26 VVGGLEVPWALAFLPDGG-MLIAERPGRIRLFR-EGRLS-TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG  102 (352)
T ss_dssp             EECCCSCEEEEEECTTSC-EEEEETTTEEEEEE-TTEEE-EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred             EECCCCCceEEEEcCCCe-EEEEeCCCeEEEEE-CCCcc-EeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence            4567889999 9998776 9999   7899998 77543 222     234678999999997   7899999874311 


Q ss_pred             --CcEEEEeCCCC---CceeEEe------cCccCceEEEEeCCCCEEEEEeC-------------CCCcEEEEEccC---
Q psy14258        196 --PMLERSLLDGT---ERFPMVT------HKIVYPYGVTVDFPTKHVYWVDT-------------YLDFIDRINYDG---  248 (440)
Q Consensus       196 --~~I~r~~~dG~---~~~~l~~------~~~~~P~gl~vD~~~~~ly~~d~-------------~~~~i~~~~~dG---  248 (440)
                        .+|.|.+.++.   ..++++.      .....|.+|++++ .++||+++.             ..++|.+++.+|   
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p  181 (352)
T 2ism_A          103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA  181 (352)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred             CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence              48999999864   2334433      1234689999996 559999973             236899999998   


Q ss_pred             ----------CCcEEEecCCccCceeeeeEec--CEEEEEecCCCe--------EEEEeccC--C--------------C
Q psy14258        249 ----------TDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQS--------IIRVNKFN--S--------------D  292 (440)
Q Consensus       249 ----------~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~--------i~~~~~~~--g--------------~  292 (440)
                                ...++...+  +++|.|++++.  +.||++|...+.        |.++.+-.  |              .
T Consensus       182 ~~npf~~~~~~~~~i~a~G--~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          182 PGNPFLGRRGARPEVYSLG--HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             TTCTTTTCTTSCTTEEEEC--CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCcccCCCCCCccEEEEc--CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                      344555555  78999999995  599999987665        55554311  0              0


Q ss_pred             ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCC---ceeeeeecCCCCceEEEEEcCCCE
Q psy14258        293 DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTT---EQAIMPITDLKRPSVIDYHEKEEY  369 (440)
Q Consensus       293 ~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~---~~~~~~~~~~~~p~~l~~d~~~~~  369 (440)
                      ....+.....|.++.++           ++.||+++...++|.++.+++.+..   .+....+....+|.+++++++ +.
T Consensus       260 p~~~~~~~~ap~G~~~~-----------~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd-G~  327 (352)
T 2ism_A          260 PLYFWPQGFPPGNLAFF-----------RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD-GA  327 (352)
T ss_dssp             CSEECTTCCCEEEEEEE-----------TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT-SC
T ss_pred             CeEecCCCCCCcceEEE-----------CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCC-Cc
Confidence            00011112246666664           4678899887789999999866321   111112244678999999996 47


Q ss_pred             EEEEECC
Q psy14258        370 IYYAELT  376 (440)
Q Consensus       370 vy~~d~~  376 (440)
                      ||+++..
T Consensus       328 lyv~~~~  334 (352)
T 2ism_A          328 LYVTTSN  334 (352)
T ss_dssp             EEEEECS
T ss_pred             EEEEEeC
Confidence            9999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.66  E-value=9.1e-14  Score=134.28  Aligned_cols=247  Identities=15%  Similarity=0.127  Sum_probs=170.9

Q ss_pred             EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe-----cCccCceEEEEeCC---CCEEEEEeC
Q psy14258        165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT-----HKIVYPYGVTVDFP---TKHVYWVDT  236 (440)
Q Consensus       165 ~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~-----~~~~~P~gl~vD~~---~~~ly~~d~  236 (440)
                      .++...+..|++|+++| .|.||+++..   ++|.+.+.+|.  +.+..     .....|.||++++.   +++||+++.
T Consensus        22 ~~va~~l~~P~~ia~~p-dG~l~V~e~~---g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           22 SEVASDLEVPWSIAPLG-GGRYLVTERP---GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             EEEECSCSCEEEEEEEE-TTEEEEEETT---TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEEeCCCCCCeEEEEcC-CCeEEEEeCC---CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            34456899999999999 6899999987   59999987776  33322     23567999999987   799999986


Q ss_pred             C---C----CcEEEEEccCC-----CcEEEec---CCccCceeeeeEecC-EEEEEecC-------------CCeEEEEe
Q psy14258        237 Y---L----DFIDRINYDGT-----DRKTIRK---GFPVQNLYDITVFEN-NLFVTSWR-------------NQSIIRVN  287 (440)
Q Consensus       237 ~---~----~~i~~~~~dG~-----~~~~i~~---~~~~~~p~gl~~~~~-~ly~td~~-------------~~~i~~~~  287 (440)
                      .   .    ++|.+++.++.     ..+++..   ....+.|.+|++..| .||++...             .++|.|++
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~  175 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVD  175 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence            4   3    68999998875     2344433   122456888998765 99999632             36899999


Q ss_pred             ccCCC--------ceEEE-ecCCCCeEEEEeccCCCCCCCCC-ceeEEeecCCcc---EEEEEEcCCC-C--------CC
Q psy14258        288 KFNSD--------DYETI-ANFSRPFAIHIYHRQKQPDALKP-STFLLYAKGKPA---IIKGLTFKRD-G--------TT  345 (440)
Q Consensus       288 ~~~g~--------~~~~~-~~~~~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~~~---~I~~i~~~~~-~--------~~  345 (440)
                      .. |+        ..+++ .++.+|.++.+.          | .+.|++++....   .|.++...+. +        ..
T Consensus       176 ~d-G~~p~~npf~~~~i~a~G~rnp~Gla~d----------~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~  244 (354)
T 3a9g_A          176 EE-GRPPADNPFPNSPIWSYGHRNPQGIDWH----------RASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR  244 (354)
T ss_dssp             TT-SCCCTTSSSTTCCEEEECCSCCCEEEEC----------TTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred             CC-CCCCCCCCCCCCcEEEEccCCcceEEEe----------CCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence            75 43        23333 456678898776          4 467999887643   4555543221 0        00


Q ss_pred             ceeeeeec----CCCCceEEEE-------EcCCCEEEEEECCCCeEEEEecCCCC----eEEEEECCCCCeeeEEEecCC
Q psy14258        346 EQAIMPIT----DLKRPSVIDY-------HEKEEYIYYAELTSYVIERRKMFGRG----KEVVIDTGIYNVEGMAVDWMA  410 (440)
Q Consensus       346 ~~~~~~~~----~~~~p~~l~~-------d~~~~~vy~~d~~~~~I~r~~~~g~~----~~~~~~~~~~~~~glAvD~~~  410 (440)
                      .....|+.    ....|.+++|       ++ .+.+|+++...++|.++.+++.+    .+.++......|.+|++++.+
T Consensus       245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~-~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG  323 (354)
T 3a9g_A          245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGL-RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG  323 (354)
T ss_dssp             TTSCCCSEECTTCCCCEEEEEECCSSSCGGG-TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred             CCCcCCEeecCCCCcCCcceEEECCCCCccc-CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence            01112221    2346889999       44 57899999999999999998642    123332225689999999865


Q ss_pred             CcEEEEeCC-CC---------eEEEEEeCC
Q psy14258        411 NNLYWTDAG-IG---------TINVAKISD  430 (440)
Q Consensus       411 ~~lYwtd~~-~~---------~I~~~~~~g  430 (440)
                       .||+++.. .+         +|.++...|
T Consensus       324 -~lyv~~~~~~G~g~~~~~~g~i~ri~~~g  352 (354)
T 3a9g_A          324 -GILISTSNRDGRGSLRAGDDKILKIVSEQ  352 (354)
T ss_dssp             -CEEEEECTTSSSSCCCTTCSCEEEEEETT
T ss_pred             -cEEEEEeCCCCCcCCCCCCCEEEEEecCC
Confidence             79999863 44         899988877

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.65  E-value=4.2e-14  Score=136.63  Aligned_cols=234  Identities=16%  Similarity=0.145  Sum_probs=159.1

Q ss_pred             EEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe-----cCccCceEEEEeCC---CCEEEEEeCC
Q psy14258        166 AIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT-----HKIVYPYGVTVDFP---TKHVYWVDTY  237 (440)
Q Consensus       166 ~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~-----~~~~~P~gl~vD~~---~~~ly~~d~~  237 (440)
                      ++...+..|++|+++| .|.||+++..   ++|.+.+ +|.. +.+..     .....|.||++++.   +++||+++..
T Consensus        25 ~va~~l~~P~~ia~~p-dG~l~V~e~~---g~I~~i~-~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           25 EVVGGLEVPWALAFLP-DGGMLIAERP---GRIRLFR-EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             EEECCCSCEEEEEECT-TSCEEEEETT---TEEEEEE-TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             EEECCCCCceEEEEcC-CCeEEEEeCC---CeEEEEE-CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            3455789999999999 6889999976   5999999 7753 22221     23568999999977   7899999975


Q ss_pred             C-----CcEEEEEccCC---CcEEEec--C---CccCceeeeeEecC-EEEEEecC-------------CCeEEEEeccC
Q psy14258        238 L-----DFIDRINYDGT---DRKTIRK--G---FPVQNLYDITVFEN-NLFVTSWR-------------NQSIIRVNKFN  290 (440)
Q Consensus       238 ~-----~~i~~~~~dG~---~~~~i~~--~---~~~~~p~gl~~~~~-~ly~td~~-------------~~~i~~~~~~~  290 (440)
                      .     ++|.+++.++.   ..+++..  .   .....|.+|++..+ +||+++..             .++|.+++..+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence            4     78999998864   2333333  1   12456889999765 99999742             36899998753


Q ss_pred             C------------CceEEE-ecCCCCeEEEEeccCCCCCCCCC-ceeEEeecCCccE--------EEEEEcCCC-CC---
Q psy14258        291 S------------DDYETI-ANFSRPFAIHIYHRQKQPDALKP-STFLLYAKGKPAI--------IKGLTFKRD-GT---  344 (440)
Q Consensus       291 g------------~~~~~~-~~~~~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~~~~--------I~~i~~~~~-~~---  344 (440)
                      .            ...+++ .++.+|.++.+.          | .+.|++++...+.        |.++...+. +.   
T Consensus       179 ~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d----------~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~  248 (352)
T 2ism_A          179 EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWH----------PKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRV  248 (352)
T ss_dssp             SBCTTCTTTTCTTSCTTEEEECCSEECCCEEC----------TTTCCEEEEEECC------CCCEEEEECTTCBCCTTTC
T ss_pred             CCCCCCcccCCCCCCccEEEEcCCCcccEEEE----------CCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcc
Confidence            1            122233 345567777665          4 4679998876554        655543331 00   


Q ss_pred             -----Cceeeeee---cCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC-------eEEEEECCCCCeeeEEEecC
Q psy14258        345 -----TEQAIMPI---TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG-------KEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       345 -----~~~~~~~~---~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~-------~~~~~~~~~~~~~glAvD~~  409 (440)
                           ......|+   .....|.|++| + ++.+|+++...++|.++.+++..       .+.++. ....|.+|++++.
T Consensus       249 ~g~~~~~~~~~p~~~~~~~~ap~G~~~-~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~rp~~v~~~pd  325 (352)
T 2ism_A          249 VGRGNDPRYRDPLYFWPQGFPPGNLAF-F-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-GFGRLREVQVGPD  325 (352)
T ss_dssp             CSCCCCTTSCCCSEECTTCCCEEEEEE-E-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-SSCCEEEEEECTT
T ss_pred             cCCCCCCCCcCCeEecCCCCCCcceEE-E-CCEEEEEECCCCEEEEEEECCCCcceeecchheecc-cCCCeeEEEECCC
Confidence                 00011122   22346889999 3 57899999999999999998543       234443 4578999999986


Q ss_pred             CCcEEEEeCC
Q psy14258        410 ANNLYWTDAG  419 (440)
Q Consensus       410 ~~~lYwtd~~  419 (440)
                      + .||+++..
T Consensus       326 G-~lyv~~~~  334 (352)
T 2ism_A          326 G-ALYVTTSN  334 (352)
T ss_dssp             S-CEEEEECS
T ss_pred             C-cEEEEEeC
Confidence            5 79999864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.65  E-value=3.5e-13  Score=126.84  Aligned_cols=236  Identities=8%  Similarity=-0.000  Sum_probs=170.5

Q ss_pred             EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEE
Q psy14258        164 MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDR  243 (440)
Q Consensus       164 ~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~  243 (440)
                      +.++......++|.+.|+..+.|||+|...  .+|.+.++++...+.+..  ...|.++++++. ++||++.  .+.|.+
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~--~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~d-G~l~v~~--~~~l~~   77 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPA--KKVCRWDSFTKQVQRVTM--DAPVSSVALRQS-GGYVATI--GTKFCA   77 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTT--TEEEEEETTTCCEEEEEC--SSCEEEEEEBTT-SSEEEEE--TTEEEE
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCC--CEEEEEECCCCcEEEEeC--CCceEEEEECCC-CCEEEEE--CCeEEE
Confidence            455666778899999999999999999876  599999998765543322  357999999955 4587776  468999


Q ss_pred             EEccCCCcEEEecC---CccCceeeeeEecC-EEEEEecC-----------CCeEEEEeccCCCceEEEecCCCCeEEEE
Q psy14258        244 INYDGTDRKTIRKG---FPVQNLYDITVFEN-NLFVTSWR-----------NQSIIRVNKFNSDDYETIANFSRPFAIHI  308 (440)
Q Consensus       244 ~~~dG~~~~~i~~~---~~~~~p~gl~~~~~-~ly~td~~-----------~~~i~~~~~~~g~~~~~~~~~~~p~~~~v  308 (440)
                      ++.++...+.+...   .....|.+++++.+ .+|++++.           .+.|++++.. ++...+......|.++.+
T Consensus        78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~  156 (297)
T 3g4e_A           78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDW  156 (297)
T ss_dssp             EETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEE
T ss_pred             EECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEE
Confidence            99876666555432   12456889999854 89998743           3578888873 444445556667888877


Q ss_pred             eccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCC-CCCc--eeeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEE
Q psy14258        309 YHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRD-GTTE--QAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERR  383 (440)
Q Consensus       309 ~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~-~~~~--~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~  383 (440)
                      .          |+ ..||++++..++|.+++++.. +...  .....+. ....|.++++|+.+ .||+++...++|.++
T Consensus       157 s----------pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~  225 (297)
T 3g4e_A          157 S----------LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRL  225 (297)
T ss_dssp             C----------TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEE
T ss_pred             c----------CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEE
Confidence            6          34 579999987789999998632 1211  1111111 22468999999875 699999888999999


Q ss_pred             ecC-CCCeEEEEECCCCCeeeEEEe-cCCCcEEEEeCC
Q psy14258        384 KMF-GRGKEVVIDTGIYNVEGMAVD-WMANNLYWTDAG  419 (440)
Q Consensus       384 ~~~-g~~~~~~~~~~~~~~~glAvD-~~~~~lYwtd~~  419 (440)
                      +++ |.-.. .+......|..+|+. +..+.||+|...
T Consensus       226 d~~tG~~~~-~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          226 DPVTGKRLQ-TVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             CTTTCCEEE-EEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             cCCCceEEE-EEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            998 54333 334455689999998 677899999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=2.3e-13  Score=128.38  Aligned_cols=249  Identities=16%  Similarity=0.127  Sum_probs=173.2

Q ss_pred             cCCCCCceEEEEcCCCCeEEEE-------EcCCCCCcEEEEeCCCCCceeEEe----cCccCceEEEEeCCCCEEEEEeC
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFT-------KWGATRPMLERSLLDGTERFPMVT----HKIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywt-------d~~~~~~~I~r~~~dG~~~~~l~~----~~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      ...+..|.++++|+ .|.||++       +...  ++|.+.+++......+..    .....|.++++|+.+++||+++.
T Consensus        14 ~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~   90 (314)
T 1pjx_A           14 TEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPA--GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             ECCCTTCEEEEECT-TSCEEEEETTCEETTEEC--CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred             hccCCCccCceECC-CCCEEEEEeccccCCCCC--CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC
Confidence            45788999999996 7899999       5443  589999875444333322    02357999999965589999986


Q ss_pred             CCCcEEEEEccCCCcEEE-ec---CCccCceeeeeEecC-EEEEEecCC---------------CeEEEEeccCCCceEE
Q psy14258        237 YLDFIDRINYDGTDRKTI-RK---GFPVQNLYDITVFEN-NLFVTSWRN---------------QSIIRVNKFNSDDYET  296 (440)
Q Consensus       237 ~~~~i~~~~~dG~~~~~i-~~---~~~~~~p~gl~~~~~-~ly~td~~~---------------~~i~~~~~~~g~~~~~  296 (440)
                      .. .|.+++.+| ....+ ..   +.....|.+++++.+ .+|+++...               +.|++++.. ++...+
T Consensus        91 ~~-~l~~~d~~g-~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (314)
T 1pjx_A           91 RL-GLLVVQTDG-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV  167 (314)
T ss_dssp             TT-EEEEEETTS-CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred             CC-CEEEEeCCC-CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence            43 799999884 44433 22   112356899999865 899998765               689999875 544444


Q ss_pred             EecCCCCeEEEEeccCCCCCCCCCce-eEEeecCCccEEEEEEcCCCCCCc--eeeeeecCC--CCceEEEEEcCCCEEE
Q psy14258        297 IANFSRPFAIHIYHRQKQPDALKPST-FLLYAKGKPAIIKGLTFKRDGTTE--QAIMPITDL--KRPSVIDYHEKEEYIY  371 (440)
Q Consensus       297 ~~~~~~p~~~~v~~~~~qp~~~~~~~-~l~~~~~~~~~I~~i~~~~~~~~~--~~~~~~~~~--~~p~~l~~d~~~~~vy  371 (440)
                      ......|.++.+..- .     .+++ .|++++...+.|.+++++..+...  .....+...  ..|.++++|+. +.+|
T Consensus       168 ~~~~~~~~~i~~~~~-~-----d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~l~  240 (314)
T 1pjx_A          168 DTAFQFPNGIAVRHM-N-----DGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED-NNLL  240 (314)
T ss_dssp             EEEESSEEEEEEEEC-T-----TSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT-CCEE
T ss_pred             ccCCCCcceEEEecc-c-----CCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC-CCEE
Confidence            445556777765411 0     1343 788988767899999876321111  111122221  46899999986 5699


Q ss_pred             EEECCCCeEEEEecC-CCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        372 YAELTSYVIERRKMF-GRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       372 ~~d~~~~~I~r~~~~-g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +++...+.|.+++++ |.....+ ......|.+++++..++.||+++...+.|.+++++.
T Consensus       241 v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999888999999998 6544443 334478999999987767999998888999999874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.64  E-value=9.5e-13  Score=125.05  Aligned_cols=277  Identities=13%  Similarity=0.067  Sum_probs=188.4

Q ss_pred             eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc-eeEEe
Q psy14258        139 RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER-FPMVT  213 (440)
Q Consensus       139 avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~-~~l~~  213 (440)
                      .++...+.+|++    +.|.+.+++.......+......| +++++|...+||++....  .+|.+.+++.... ...+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~--~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFC--QTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTT--CEEEEEECSSSSCEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCC--CeEEEEECCCCceeEEecc
Confidence            345567778888    789999988655544445556667 999999767799999865  5999999976554 22222


Q ss_pred             cCccCceE-EEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCe-EEEEe
Q psy14258        214 HKIVYPYG-VTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQS-IIRVN  287 (440)
Q Consensus       214 ~~~~~P~g-l~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~-i~~~~  287 (440)
                       ....|.. +++++.+++||..+...+  .|..++++..........  -..|.++++..+  +||.++...+. |...+
T Consensus        81 -~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~  157 (331)
T 3u4y_A           81 -EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSSANTVRRFK  157 (331)
T ss_dssp             -ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred             -cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence             2346777 999999999994433324  899999875544333332  356899998765  79999987677 66555


Q ss_pred             ccCCCce-----EEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEE
Q psy14258        288 KFNSDDY-----ETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVI  361 (440)
Q Consensus       288 ~~~g~~~-----~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l  361 (440)
                      .......     ..+.....|.++.+.          |+ .+|+++....+.|..+++... ........+.....|.++
T Consensus       158 ~~~~g~~~~~~~~~~~~~~~~~~~~~s----------pdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~  226 (331)
T 3u4y_A          158 IDADGVLFDTGQEFISGGTRPFNITFT----------PDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTNNLPGTI  226 (331)
T ss_dssp             ECTTCCEEEEEEEEECSSSSEEEEEEC----------TTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECSSCCCCE
T ss_pred             ECCCCcEeecCCccccCCCCccceEEC----------CCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCCCCCceE
Confidence            4332222     122223346666554          34 468888776789999998755 211112233334678999


Q ss_pred             EEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE--ECCC-------CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCe
Q psy14258        362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI--DTGI-------YNVEGMAVDWMANNLYWTDAGIGTINVAKISDFS  432 (440)
Q Consensus       362 ~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~--~~~~-------~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~  432 (440)
                      ++++.++++|+++...+.|...++.....+.+-  ..++       ..+.++++.+.++.||.+....+.|.+.++.++.
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            999999999999988889999998754332221  1121       1234589999999999999999999999998843

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.64  E-value=1.6e-13  Score=129.78  Aligned_cols=244  Identities=11%  Similarity=0.065  Sum_probs=173.5

Q ss_pred             CCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCC
Q psy14258        159 YMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYL  238 (440)
Q Consensus       159 dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~  238 (440)
                      .+...+.+. .+...+.|.+.+|..+.|||++...  .+|.+.+.+|..  ..+......|+++++|+ .++||+++...
T Consensus        33 ~~~~~~~l~-~~~~~~egp~~~~~g~~l~~~d~~~--~~i~~~~~~g~~--~~~~~~~~~~~gl~~d~-dG~l~v~~~~~  106 (305)
T 3dr2_A           33 GDARLLTLY-DQATWSEGPAWWEAQRTLVWSDLVG--RRVLGWREDGTV--DVLLDATAFTNGNAVDA-QQRLVHCEHGR  106 (305)
T ss_dssp             TTCCCEEEE-CCCSSEEEEEEEGGGTEEEEEETTT--TEEEEEETTSCE--EEEEESCSCEEEEEECT-TSCEEEEETTT
T ss_pred             CCCceEEEe-cCCcCccCCeEeCCCCEEEEEECCC--CEEEEEeCCCCE--EEEeCCCCccceeeECC-CCCEEEEECCC
Confidence            344444443 4778899999999766799999876  599999997753  23334456799999995 56799999888


Q ss_pred             CcEEEEEccCCCcEEEec---CCccCceeeeeEecC-EEEEEec-----------------CCCeEEEEeccCCCceEEE
Q psy14258        239 DFIDRINYDGTDRKTIRK---GFPVQNLYDITVFEN-NLFVTSW-----------------RNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       239 ~~i~~~~~dG~~~~~i~~---~~~~~~p~gl~~~~~-~ly~td~-----------------~~~~i~~~~~~~g~~~~~~  297 (440)
                      +.|.+++.+|. .+.+..   +..+..|.+++++.+ .+|+||.                 ..+.|++++..+|+...+.
T Consensus       107 ~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~  185 (305)
T 3dr2_A          107 RAITRSDADGQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA  185 (305)
T ss_dssp             TEEEEECTTSC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred             CEEEEECCCCC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence            89999999865 343332   223457889999865 9999874                 1367999998777666555


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCc-----cEEEEEEcCCCCCCceeeeee-cCCCCceEEEEEcCCCEE
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKP-----AIIKGLTFKRDGTTEQAIMPI-TDLKRPSVIDYHEKEEYI  370 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~-----~~I~~i~~~~~~~~~~~~~~~-~~~~~p~~l~~d~~~~~v  370 (440)
                       .+..|.++.+.          |+ ..||+++...     +.|+++++++.+ ........ .....|.++++|+.++ |
T Consensus       186 -~~~~p~gl~~s----------pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-l  252 (305)
T 3dr2_A          186 -DLDHPNGLAFS----------PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-L  252 (305)
T ss_dssp             -EESSEEEEEEC----------TTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-E
T ss_pred             -cCCCCcceEEc----------CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-E
Confidence             66678888765          34 4688988753     689999887652 11111111 1234688999998766 8


Q ss_pred             EEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        371 YYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       371 y~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      |+++  .+.|++++++|.....+...  ..|..++++..++.||++..  +.+.++++
T Consensus       253 wv~~--~~gv~~~~~~g~~~~~~~~~--~~~~~~~f~~d~~~L~it~~--~~l~~~~~  304 (305)
T 3dr2_A          253 WSSS--GTGVCVFDSDGQLLGHIPTP--GTASNCTFDQAQQRLFITGG--PCLWMLPL  304 (305)
T ss_dssp             EECC--SSEEEEECTTSCEEEEEECS--SCCCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred             EEec--CCcEEEECCCCCEEEEEECC--CceeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence            7776  45699999988655554332  26999999877788999975  46766654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.62  E-value=1.8e-12  Score=124.30  Aligned_cols=248  Identities=11%  Similarity=0.069  Sum_probs=168.4

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcC-CCCCcEEEEeCCCCCceeEEe--cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEc
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWG-ATRPMLERSLLDGTERFPMVT--HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINY  246 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~-~~~~~I~r~~~dG~~~~~l~~--~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~  246 (440)
                      ....|.+++++| .|.||.++.. .+ ..|...++++...+.+..  .....|.++++++.+++||+++...+.|...++
T Consensus        38 ~~~~p~~~a~sp-dg~l~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           38 ATQNPTYLALSA-KDCLYSVDKEDDE-GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             ECSCCCCEEECT-TCEEEEEEEETTE-EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCcceEEEcc-CCeEEEEEecCCC-ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            457899999999 5669999863 22 588888886654333322  235679999999999999999987788888887


Q ss_pred             cC-CCcEEEec----CC------ccCceeeeeEecC-EEEEEecCCCeEEEEecc-CCCceEEE--e--cCCCCeEEEEe
Q psy14258        247 DG-TDRKTIRK----GF------PVQNLYDITVFEN-NLFVTSWRNQSIIRVNKF-NSDDYETI--A--NFSRPFAIHIY  309 (440)
Q Consensus       247 dG-~~~~~i~~----~~------~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~-~g~~~~~~--~--~~~~p~~~~v~  309 (440)
                      +. .....+..    +.      ...+|.++++..+ .+|+++...+.|..++.. +|+.....  .  ....|.++.+.
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            42 22332221    10      1235778888754 699999988888887766 34322211  1  12246666544


Q ss_pred             ccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCc-eeeeeecCC-------CCceEEEEEcCCCEEEEEECCCCeE
Q psy14258        310 HRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTE-QAIMPITDL-------KRPSVIDYHEKEEYIYYAELTSYVI  380 (440)
Q Consensus       310 ~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~-~~~~~~~~~-------~~p~~l~~d~~~~~vy~~d~~~~~I  380 (440)
                                |+ .+|++++...+.|..++++.. ... .....+...       ..|.++++++.+++||+++...+.|
T Consensus       196 ----------pdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v  264 (347)
T 3hfq_A          196 ----------PDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL  264 (347)
T ss_dssp             ----------TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred             ----------CCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence                      34 468888776688888887753 111 111111111       3478999999999999999888988


Q ss_pred             EEEecCCC-CeEEE--EECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        381 ERRKMFGR-GKEVV--IDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       381 ~r~~~~g~-~~~~~--~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ...+++.. ..+.+  +..+-..|.+|++++.++.||.++...++|.+++++.
T Consensus       265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            88887632 22222  2233357999999999999999999989999997764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=2.2e-12  Score=122.85  Aligned_cols=246  Identities=11%  Similarity=0.010  Sum_probs=172.4

Q ss_pred             CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCC----CcEEEE
Q psy14258        169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYL----DFIDRI  244 (440)
Q Consensus       169 ~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~----~~i~~~  244 (440)
                      .....|.++++|+ .|.|||++...  +.|.+.++++...+.+.......|.+|++|+ .++||+++...    +.|.++
T Consensus        42 ~~~~~~~~~~~~~-~g~l~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           42 KKGLQLEGLNFDR-QGQLFLLDVFE--GNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             SSCCCEEEEEECT-TSCEEEEETTT--CEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred             ccCccccCcEECC-CCCEEEEECCC--CEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEE
Confidence            3556799999998 68899998765  5899999987665555433446799999994 56899998766    689999


Q ss_pred             EccCCCcEEEec-CCccCceeeeeEecC-EEEEEecC------CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCC
Q psy14258        245 NYDGTDRKTIRK-GFPVQNLYDITVFEN-NLFVTSWR------NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPD  316 (440)
Q Consensus       245 ~~dG~~~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~------~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~  316 (440)
                      +.++.....+.. ......|.+++++.+ .+|+++..      .+.|++++..+++...+......|.++.+.       
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-------  190 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALS-------  190 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC-------
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEEC-------
Confidence            998877664433 212457899999855 89999874      478999987655444444444457777655       


Q ss_pred             CCCCc-eeEEeecCCccEEEEEEcCCCCCC-ce----eeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCe
Q psy14258        317 ALKPS-TFLLYAKGKPAIIKGLTFKRDGTT-EQ----AIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK  390 (440)
Q Consensus       317 ~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~-~~----~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~  390 (440)
                         |+ .+|++++...+.|++++++..+.. ..    ......+...|.++++|+.+ .+|+++...+.|++++++|...
T Consensus       191 ---~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~  266 (333)
T 2dg1_A          191 ---TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPI  266 (333)
T ss_dssp             ---TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEE
T ss_pred             ---CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEE
Confidence               34 468888776689999998543111 10    11112222468899999875 5999988889999999987544


Q ss_pred             EEEEECCCC------CeeeEEEecCCCcEEEEeCC-----CCeEEEEEeCC
Q psy14258        391 EVVIDTGIY------NVEGMAVDWMANNLYWTDAG-----IGTINVAKISD  430 (440)
Q Consensus       391 ~~~~~~~~~------~~~glAvD~~~~~lYwtd~~-----~~~I~~~~~~g  430 (440)
                      ..+.. ...      .|.+++++..++.||++...     .+.|..+++..
T Consensus       267 ~~~~~-~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~  316 (333)
T 2dg1_A          267 GQILI-PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA  316 (333)
T ss_dssp             EEEEC-TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             EEEEc-CCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence            44432 222      68999998777899998764     24677777654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.60  E-value=1.7e-11  Score=120.95  Aligned_cols=276  Identities=11%  Similarity=0.019  Sum_probs=197.1

Q ss_pred             cccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEc-----CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258        134 LDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAID-----LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~-----~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~  203 (440)
                      ..|.+ ++++ ++.+|++    +.|.+.+++.........     .....+.++++.+ .|.+|++....  +.|...++
T Consensus       123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d--~~v~~~d~  198 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQA--NAVHVFDL  198 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGG--TEEEEEET
T ss_pred             CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCC--CEEEEEEC
Confidence            45778 8888 7778888    569999988655443322     2234577899977 68888888665  58999998


Q ss_pred             CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEec---
Q psy14258        204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSW---  278 (440)
Q Consensus       204 dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~---  278 (440)
                      +.......+......|.++++++.+.+||++....+.|...++...........  ...|.++++..+  .||.+..   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESC
T ss_pred             CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCC
Confidence            765544444444567999999999999999998888999999865443332222  345888888643  7888775   


Q ss_pred             ----CCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeec
Q psy14258        279 ----RNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT  353 (440)
Q Consensus       279 ----~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~  353 (440)
                          .++.|...+..+++....+.....|.++.+.          |+ .+|+++....+.|..++++..    .....+.
T Consensus       277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~----------~~g~~l~~~~~~~~~v~v~d~~~~----~~~~~~~  342 (433)
T 3bws_A          277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSG----------NTENKIYVSDMCCSKIEVYDLKEK----KVQKSIP  342 (433)
T ss_dssp             TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEEC----------SSTTEEEEEETTTTEEEEEETTTT----EEEEEEE
T ss_pred             ccccCCCeEEEEECCCCcEEeeccCCCCcceEEEC----------CCCCEEEEEecCCCEEEEEECCCC----cEEEEec
Confidence                3567888887776555444322245555443          33 468887666789999998755    2333334


Q ss_pred             CCCCceEEEEEcCCCEEEEEECCC--------------CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC
Q psy14258        354 DLKRPSVIDYHEKEEYIYYAELTS--------------YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       354 ~~~~p~~l~~d~~~~~vy~~d~~~--------------~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                      ....|.++++++.++.+|++....              +.|+..++........+. .-..|.++++++.++.||.+...
T Consensus       343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  421 (433)
T 3bws_A          343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFL  421 (433)
T ss_dssp             CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETT
T ss_pred             CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECC
Confidence            445788999999999999998653              489999987544333344 34679999999999999999887


Q ss_pred             CCeEEEEEeCC
Q psy14258        420 IGTINVAKISD  430 (440)
Q Consensus       420 ~~~I~~~~~~g  430 (440)
                      .++|.+.++++
T Consensus       422 d~~i~v~~~~~  432 (433)
T 3bws_A          422 DHQIRVYRRDG  432 (433)
T ss_dssp             TTEEEEEEETT
T ss_pred             CCeEEEEEecC
Confidence            89999999886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.60  E-value=2e-11  Score=118.64  Aligned_cols=271  Identities=15%  Similarity=0.116  Sum_probs=196.2

Q ss_pred             cEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceE
Q psy14258        146 KIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG  221 (440)
Q Consensus       146 ~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~g  221 (440)
                      .+|++    +.|.+.+++.......+.. -..|.+++++|...+||++....  +.|...++........+.. -..|.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d--~~i~v~d~~~~~~~~~~~~-~~~v~~   78 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHS--NDVSIIDTATNNVIATVPA-GSSPQG   78 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGG--TEEEEEETTTTEEEEEEEC-SSSEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeec-CCCcceEEECCCCCEEEEECCCC--CeEEEEECCCCeEEEEEEC-CCCccc
Confidence            46666    6788888876555444442 24699999999777899987554  5899999864433333332 237899


Q ss_pred             EEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEec
Q psy14258        222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIAN  299 (440)
Q Consensus       222 l~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~  299 (440)
                      +++++.+.+||++....+.|...++...........  -..|.++++..+  .||++....+.|...+..+++....+..
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  156 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence            999999999999988888999999876554433332  346788888754  7999998899999999877766655554


Q ss_pred             CCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC--C
Q psy14258        300 FSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL--T  376 (440)
Q Consensus       300 ~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~--~  376 (440)
                      ...|..+.+.          |+ .+|+++....+.|+.+++...    .....+.....+.++++++.++++|+++.  .
T Consensus       157 ~~~~~~~~~~----------~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  222 (391)
T 1l0q_A          157 GRSPKGIAVT----------PDGTKVYVANFDSMSISVIDTVTN----SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY  222 (391)
T ss_dssp             CSSEEEEEEC----------TTSSEEEEEETTTTEEEEEETTTT----EEEEEEECSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             CCCcceEEEC----------CCCCEEEEEeCCCCEEEEEECCCC----eEEEEEecCCCccceEECCCCCEEEEEecCcC
Confidence            4456666544          23 467777666688999988665    22233333446789999999999999986  6


Q ss_pred             CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEe
Q psy14258        377 SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       377 ~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l  437 (440)
                      .+.|+..++........+..+ ..|.++++++.++.||++....++|.+.++...+..+.+
T Consensus       223 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          223 FNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             CCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEECCCCeEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            889999998765444444433 568999999989899999888899999998753444443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.60  E-value=1.3e-13  Score=132.77  Aligned_cols=245  Identities=12%  Similarity=0.117  Sum_probs=157.9

Q ss_pred             CCceEEEEcCCCCeEEEEEcCC-C-CCcEEEEeCCCCCceeE------EecCccCceEEEEeCCCCEEEEEeCC-----C
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGA-T-RPMLERSLLDGTERFPM------VTHKIVYPYGVTVDFPTKHVYWVDTY-----L  238 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~-~-~~~I~r~~~dG~~~~~l------~~~~~~~P~gl~vD~~~~~ly~~d~~-----~  238 (440)
                      ..|.+|++++ .|++|.+.... . ..+|.+.+ +|... .+      ....+..|.|+++|+ .++|||+|..     .
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-QDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-TTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSC
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-CCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCC
Confidence            6899999998 68999996321 1 13788887 65321 00      012367899999994 4899999987     5


Q ss_pred             CcEEEEEccCCC-cEEEecC----CccCceeeeeEe--cCEEEEEec---CCCeEEEEeccCCCceEEEec--CCCC--e
Q psy14258        239 DFIDRINYDGTD-RKTIRKG----FPVQNLYDITVF--ENNLFVTSW---RNQSIIRVNKFNSDDYETIAN--FSRP--F  304 (440)
Q Consensus       239 ~~i~~~~~dG~~-~~~i~~~----~~~~~p~gl~~~--~~~ly~td~---~~~~i~~~~~~~g~~~~~~~~--~~~p--~  304 (440)
                      .+|..+++.... .+.+...    ....+|.+++++  ++.+|++|.   ..+.|..++..+++...++..  ...|  .
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            799999987443 3444321    112467999998  469999998   788999999877765544422  1011  1


Q ss_pred             EEE-----Ee--ccCC-------CCCCC--CCc-eeEEeecCCccEEEEEEcCCC--CC-Cc-ee---eeeecCCCCceE
Q psy14258        305 AIH-----IY--HRQK-------QPDAL--KPS-TFLLYAKGKPAIIKGLTFKRD--GT-TE-QA---IMPITDLKRPSV  360 (440)
Q Consensus       305 ~~~-----v~--~~~~-------qp~~~--~~~-~~l~~~~~~~~~I~~i~~~~~--~~-~~-~~---~~~~~~~~~p~~  360 (440)
                      .+.     +.  .+..       -|.+.  .|+ .+||+++...+++++++.+..  +. .+ +.   .........|.|
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence            110     00  0000       00000  244 578998876678999886421  01 10 00   011112346889


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEec-CCCCeEEEEEC-CCCCeeeEEEecCCCcEEEEeCCCCeE
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKM-FGRGKEVVIDT-GIYNVEGMAVDWMANNLYWTDAGIGTI  423 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~-~g~~~~~~~~~-~~~~~~glAvD~~~~~lYwtd~~~~~I  423 (440)
                      +++|+. +.||+++...++|.+.+. +|. .+++... .+..|.+||+|. .++||+++...+++
T Consensus       253 ia~d~~-G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          253 ISIDKD-HNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEECTT-CCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECT-TSCEEEEECCGGGS
T ss_pred             EEECCC-CCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECC-CCcEEEEeCccccc
Confidence            999986 679999999999999999 774 4445442 367899999997 47899998755544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.59  E-value=2.2e-13  Score=131.58  Aligned_cols=247  Identities=12%  Similarity=0.049  Sum_probs=167.5

Q ss_pred             eeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEE------cCCCCCceEEEEcCC---CCeEEEEEcCCC-
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAI------DLNLSKPRGIALDPT---SGYMFFTKWGAT-  194 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~------~~~~~~P~~iavd~~---~g~lywtd~~~~-  194 (440)
                      +.+++..|.+ |+++.++.||++   ++|.+.+.+|...+.+.      ......|.+|+++|.   +|+||+++.... 
T Consensus        13 va~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           13 LQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             EEEEESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             EECCCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            3467899999 999876659999   79999988886543222      123456899999996   899999975410 


Q ss_pred             ----CCcEEEEeCCCC-----CceeEEec------CccCceEEEEeCCCCEEEEEeCC-------------CCcEEEEEc
Q psy14258        195 ----RPMLERSLLDGT-----ERFPMVTH------KIVYPYGVTVDFPTKHVYWVDTY-------------LDFIDRINY  246 (440)
Q Consensus       195 ----~~~I~r~~~dG~-----~~~~l~~~------~~~~P~gl~vD~~~~~ly~~d~~-------------~~~i~~~~~  246 (440)
                          ..+|.|.++++.     ..++++..      ....|.+|++++ .++||++...             .++|.+++.
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~  171 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTD  171 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence                148999988754     23344432      234588999996 5699999632             358999999


Q ss_pred             cCC-------------CcEEEecCCccCceeeeeEec--CEEEEEecCCC---eEEEEeccCCCc---------------
Q psy14258        247 DGT-------------DRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQ---SIIRVNKFNSDD---------------  293 (440)
Q Consensus       247 dG~-------------~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~---~i~~~~~~~g~~---------------  293 (440)
                      ||+             ..++...+  +++|.|++++.  +.||++|...+   .|.++.+  |..               
T Consensus       172 dG~~p~~npf~~~~~~~~~i~a~G--~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~--G~nyGwp~~~~~~~~~~~  247 (353)
T 2g8s_A          172 QGEIPDDNPFIKESGVRAEIWSYG--IRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK--GKNYGWPLATWGINYSGF  247 (353)
T ss_dssp             TSCCCTTCTTTTSTTSCTTEEEEC--CSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT--TCBCCTTTBCSSBCTTSS
T ss_pred             CCCCCCCCCCcCCCCCCccEEEEc--CcCccceEEECCCCCEEEEecCCCCCcEEeEecc--CCcCCCCCccCCCCCCCC
Confidence            987             44555555  78999999996  59999997643   4444422  110               


Q ss_pred             -------------e---EEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CC
Q psy14258        294 -------------Y---ETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LK  356 (440)
Q Consensus       294 -------------~---~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~  356 (440)
                                   .   ..+.....|.++.++....-|   ..++.|++++...++|.++.+++. ........+.. ..
T Consensus       248 ~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp---~~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~  323 (353)
T 2g8s_A          248 KIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFP---QWQQKLFIGALKDKDVIVMSVNGD-KVTEDGRILTDRGQ  323 (353)
T ss_dssp             CCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSG---GGTTEEEEEETTTTEEEEEEEETT-EEEEEEEESGGGCC
T ss_pred             ccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCc---ccCCcEEEEEccCCEEEEEEeCCC-eEeeeEEcccCCCC
Confidence                         0   011112246777777544333   124778999988899999999854 11111112222 35


Q ss_pred             CceEEEEEcCCCEEEEE-ECCCCeEEEEec
Q psy14258        357 RPSVIDYHEKEEYIYYA-ELTSYVIERRKM  385 (440)
Q Consensus       357 ~p~~l~~d~~~~~vy~~-d~~~~~I~r~~~  385 (440)
                      +|.++++++++ .||++ |...++|+|+..
T Consensus       324 rp~~v~~~pdG-~lyv~td~~~g~I~ri~~  352 (353)
T 2g8s_A          324 RIRDVRTGPDG-YLYVLTDESSGELLKVSP  352 (353)
T ss_dssp             CEEEEEECTTS-CEEEEECSTTEEEEEEEC
T ss_pred             ceeEEEECCCC-cEEEEEeCCCCEEEEEeC
Confidence            89999999965 59996 667899999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=1.1e-12  Score=123.02  Aligned_cols=198  Identities=11%  Similarity=0.068  Sum_probs=148.5

Q ss_pred             EEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEecc
Q psy14258        211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKF  289 (440)
Q Consensus       211 l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~  289 (440)
                      .+......|.|+++|+.++.|||++...+.|.+++.++. .+.+...  ...|.++++..+ .||+++...+.|.+++..
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~--~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHP--SHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESS--CSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECC--CCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            444567889999999888889999999999999999887 5555433  467999999765 899999888899999987


Q ss_pred             CCCceEEEec-----CCCCeEEEEeccCCCCCCCCCceeEEeecC-----------------CccEEEEEEcCCCCCCce
Q psy14258        290 NSDDYETIAN-----FSRPFAIHIYHRQKQPDALKPSTFLLYAKG-----------------KPAIIKGLTFKRDGTTEQ  347 (440)
Q Consensus       290 ~g~~~~~~~~-----~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~-----------------~~~~I~~i~~~~~~~~~~  347 (440)
                      +|+...+...     ...|.++.+.          +++.|++++.                 ..+.|++++.++.     
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d----------~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-----  163 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLA----------PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-----  163 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEEC----------TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-----
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEEC----------CCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-----
Confidence            7765443321     2245566554          4667888643                 1257888887643     


Q ss_pred             eeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC--CCC---eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCe
Q psy14258        348 AIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF--GRG---KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGT  422 (440)
Q Consensus       348 ~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~--g~~---~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~  422 (440)
                      .......+..|.++++++.++.+ |++...+.|++.+++  |.-   ..++ ......|.||++|.. ++||+++  .+.
T Consensus       164 ~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~-G~l~v~~--~~~  238 (296)
T 3e5z_A          164 LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAG-GLIWASA--GDG  238 (296)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTT-SCEEEEE--TTE
T ss_pred             EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCC-CCEEEEc--CCe
Confidence            23334566789999999988877 999999999999986  322   2344 445568999999974 5799998  678


Q ss_pred             EEEEEeCCC
Q psy14258        423 INVAKISDF  431 (440)
Q Consensus       423 I~~~~~~g~  431 (440)
                      |.+++++|+
T Consensus       239 v~~~~~~g~  247 (296)
T 3e5z_A          239 VHVLTPDGD  247 (296)
T ss_dssp             EEEECTTSC
T ss_pred             EEEECCCCC
Confidence            999999984

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.58  E-value=9e-12  Score=118.25  Aligned_cols=275  Identities=10%  Similarity=0.053  Sum_probs=185.9

Q ss_pred             eeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCce
Q psy14258         88 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEH  162 (440)
Q Consensus        88 ~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~  162 (440)
                      |+...+++|+++...+.|...++.......          .+..+...| + ++++.++.||++    ++|.+.++++..
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~----------~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~   73 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILN----------QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP   73 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEE----------EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceee----------eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            556678899999988888877765433211          122345567 9 999999989998    589999997655


Q ss_pred             E-EEEEcCCCCCceE-EEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258        163 C-MIAIDLNLSKPRG-IALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF  240 (440)
Q Consensus       163 ~-~~~~~~~~~~P~~-iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~  240 (440)
                      . ...+. ....|.. ++++|...+||.+......+.|...+++.......+.. ...|.++++++.+++||+++...+.
T Consensus        74 ~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           74 PKVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             CEEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTT
T ss_pred             eeEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCc
Confidence            3 32222 2356888 99999777788333321112899999876544333332 3568999999988899999988777


Q ss_pred             -EEEEEccCCCcE-----EEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCc---eEEEecCCCCeEEEEe
Q psy14258        241 -IDRINYDGTDRK-----TIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDD---YETIANFSRPFAIHIY  309 (440)
Q Consensus       241 -i~~~~~dG~~~~-----~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~---~~~~~~~~~p~~~~v~  309 (440)
                       |...+++.....     .....  ...|.++++..+  .+|++....+.|..++..+++.   ...+.....|.++.+.
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~s  229 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISG--GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVS  229 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECS--SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEEC
T ss_pred             eEEEEEECCCCcEeecCCccccC--CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEEC
Confidence             777776532221     11121  346899998755  7999999899999999888877   4444444566676654


Q ss_pred             ccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceee-eeec--CCCC----ceEEEEEcCCCEEEEEECCCCeEE
Q psy14258        310 HRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAI-MPIT--DLKR----PSVIDYHEKEEYIYYAELTSYVIE  381 (440)
Q Consensus       310 ~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~-~~~~--~~~~----p~~l~~d~~~~~vy~~d~~~~~I~  381 (440)
                                |+ .+|+++....+.|..+++... ...... .+..  ....    ..++++++.+++||+++...+.|.
T Consensus       230 ----------pdg~~l~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  298 (331)
T 3u4y_A          230 ----------RDGSTVYVLTESTVDVFNFNQLSG-TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELK  298 (331)
T ss_dssp             ----------TTSSEEEEECSSEEEEEEEETTTT-EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEE
T ss_pred             ----------CCCCEEEEEEcCCCEEEEEECCCC-ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEE
Confidence                      34 568888776678888887654 110010 1111  0011    235899999999999999899999


Q ss_pred             EEecCCC
Q psy14258        382 RRKMFGR  388 (440)
Q Consensus       382 r~~~~g~  388 (440)
                      ..++.+.
T Consensus       299 v~d~~~~  305 (331)
T 3u4y_A          299 VFTISGK  305 (331)
T ss_dssp             EEETTSC
T ss_pred             EEEecCC
Confidence            9999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.57  E-value=2.1e-11  Score=115.72  Aligned_cols=272  Identities=10%  Similarity=0.051  Sum_probs=180.9

Q ss_pred             CcEEEe----ceEEEEecC--CceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC--CCCceeEEe-cC
Q psy14258        145 HKIVYP----EAIYFCTHY--MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD--GTERFPMVT-HK  215 (440)
Q Consensus       145 ~~lY~~----~~I~~~~~d--g~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d--G~~~~~l~~-~~  215 (440)
                      +.+|++    +.|.+.+++  |.............|.+++++|...+||++....  +.|...+++  +...+.+.. ..
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCC--CeEEEEEecCCCCceeecccccc
Confidence            456766    678888876  4333222122446899999999777899998764  478887776  333332221 11


Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccC-C
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFN-S  291 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~-g  291 (440)
                      ...|.++++++.+..||++....+.|...+++ |...+.+..-.....|.++++..+  .||+++...+.|..++..+ +
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence            23799999999999999999878888888874 322222222111456888888754  8999997788888888765 4


Q ss_pred             CceEEE----e--cCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCC-CCCcee-eee-ec----CCCC
Q psy14258        292 DDYETI----A--NFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRD-GTTEQA-IMP-IT----DLKR  357 (440)
Q Consensus       292 ~~~~~~----~--~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~-~~~~~~-~~~-~~----~~~~  357 (440)
                      +...+.    .  ....|.++.+.          |+ .+|+++....+.|..++++.. +..... ... +.    +...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~----------pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  232 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFH----------PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  232 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEEC----------TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             ceeeecccccccCCCCCcceEEEC----------CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence            332211    1  12245565543          33 568888766688999998653 111101 111 11    1235


Q ss_pred             ceEEEEEcCCCEEEEEECCCCeEEEEecC--CCCeEEE--EECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        358 PSVIDYHEKEEYIYYAELTSYVIERRKMF--GRGKEVV--IDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       358 p~~l~~d~~~~~vy~~d~~~~~I~r~~~~--g~~~~~~--~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      |.++++++.++.+|+++...+.|...+++  +...+.+  +..+ ..|.++++++.++.||.++...+.|.+.+++
T Consensus       233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            66899999999999999888999999887  3333332  2223 4499999999999999999888999999776

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=4.3e-12  Score=119.83  Aligned_cols=228  Identities=11%  Similarity=0.098  Sum_probs=161.4

Q ss_pred             eeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~  203 (440)
                      +..+...+++ +.++.++.|||+    ++|.+.+.+|... ++ ......|.++++|+ .|.||+++.+.  .+|.+.+.
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~-~~-~~~~~~~~gl~~d~-dG~l~v~~~~~--~~v~~~~~  114 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVD-VL-LDATAFTNGNAVDA-QQRLVHCEHGR--RAITRSDA  114 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEE-EE-EESCSCEEEEEECT-TSCEEEEETTT--TEEEEECT
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEE-EE-eCCCCccceeeECC-CCCEEEEECCC--CEEEEECC
Confidence            4567788999 999998889999    7899999987643 33 22446799999999 68899999775  48999999


Q ss_pred             CCCCceeEEec----CccCceEEEEeCCCCEEEEEeCC-----------------CCcEEEEEccCCCcEEEecCCccCc
Q psy14258        204 DGTERFPMVTH----KIVYPYGVTVDFPTKHVYWVDTY-----------------LDFIDRINYDGTDRKTIRKGFPVQN  262 (440)
Q Consensus       204 dG~~~~~l~~~----~~~~P~gl~vD~~~~~ly~~d~~-----------------~~~i~~~~~dG~~~~~i~~~~~~~~  262 (440)
                      +|+. +.+...    .+..|+.+++| ..++||++|..                 .+.|.+++.++...+.+. +  +..
T Consensus       115 ~g~~-~~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--~~~  189 (305)
T 3dr2_A          115 DGQA-HLLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--LDH  189 (305)
T ss_dssp             TSCE-EEEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--ESS
T ss_pred             CCCE-EEEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--CCC
Confidence            9763 333321    24568999999 56789998741                 357888888655555554 3  778


Q ss_pred             eeeeeEecC--EEEEEecCC-----CeEEEEeccCCCc--eEEEec--CCCCeEEEEeccCCCCCCCCCceeEEeecCCc
Q psy14258        263 LYDITVFEN--NLFVTSWRN-----QSIIRVNKFNSDD--YETIAN--FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP  331 (440)
Q Consensus       263 p~gl~~~~~--~ly~td~~~-----~~i~~~~~~~g~~--~~~~~~--~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~  331 (440)
                      |.|+++..+  .||+++...     +.|++++...+..  ..++..  ...|.++.+.          +++.|+++..  
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d----------~~G~lwv~~~--  257 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD----------RGGWLWSSSG--  257 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC----------TTSCEEECCS--
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC----------CCCCEEEecC--
Confidence            999999755  799999863     7898888754431  112221  2246666655          4667888875  


Q ss_pred             cEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       332 ~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                      +.|.+++.++. ..  ..+...  ..|..++|++.++.||++..  +.++++++
T Consensus       258 ~gv~~~~~~g~-~~--~~~~~~--~~~~~~~f~~d~~~L~it~~--~~l~~~~~  304 (305)
T 3dr2_A          258 TGVCVFDSDGQ-LL--GHIPTP--GTASNCTFDQAQQRLFITGG--PCLWMLPL  304 (305)
T ss_dssp             SEEEEECTTSC-EE--EEEECS--SCCCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred             CcEEEECCCCC-EE--EEEECC--CceeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence            67988888765 11  122222  25889999988889999864  68888764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.55  E-value=6.3e-12  Score=118.39  Aligned_cols=237  Identities=11%  Similarity=0.051  Sum_probs=164.1

Q ss_pred             eeccccccce-eeeecCCcEEEe-----------ceEEEEecCCceEEEEEc----CCCCCceEEEEcCCCCeEEEEEcC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP-----------EAIYFCTHYMEHCMIAID----LNLSKPRGIALDPTSGYMFFTKWG  192 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~-----------~~I~~~~~dg~~~~~~~~----~~~~~P~~iavd~~~g~lywtd~~  192 (440)
                      +..++..|++ ++|. .++|||+           +.|.+.++++...+.+..    .....|.+|++|+..|.||+++..
T Consensus        13 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~   91 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             EECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             hhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence            3567889999 9994 4568875           468888865444433322    123679999999955999999975


Q ss_pred             CCCCcEEEEeCCCCCceeE-Eec----CccCceEEEEeCCCCEEEEEeCCC---------------CcEEEEEccCCCcE
Q psy14258        193 ATRPMLERSLLDGTERFPM-VTH----KIVYPYGVTVDFPTKHVYWVDTYL---------------DFIDRINYDGTDRK  252 (440)
Q Consensus       193 ~~~~~I~r~~~dG~~~~~l-~~~----~~~~P~gl~vD~~~~~ly~~d~~~---------------~~i~~~~~dG~~~~  252 (440)
                         ..|.+.+.+|.. ..+ ...    ....|+++++|+ .++||+++...               +.|.+++.+|. ..
T Consensus        92 ---~~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~  165 (314)
T 1pjx_A           92 ---LGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MI  165 (314)
T ss_dssp             ---TEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EE
T ss_pred             ---CCEEEEeCCCCE-EEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCC-EE
Confidence               389999998543 222 211    234699999995 67899998764               57888888754 33


Q ss_pred             EEecCCccCceeeeeEe----cC--EEEEEecCCCeEEEEecc-CCCce--EEEecC-----CCCeEEEEeccCCCCCCC
Q psy14258        253 TIRKGFPVQNLYDITVF----EN--NLFVTSWRNQSIIRVNKF-NSDDY--ETIANF-----SRPFAIHIYHRQKQPDAL  318 (440)
Q Consensus       253 ~i~~~~~~~~p~gl~~~----~~--~ly~td~~~~~i~~~~~~-~g~~~--~~~~~~-----~~p~~~~v~~~~~qp~~~  318 (440)
                      .+...  +..|.++++.    .+  .||+++..++.|++++.. +++..  ..+...     ..|.++.+.         
T Consensus       166 ~~~~~--~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d---------  234 (314)
T 1pjx_A          166 QVDTA--FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD---------  234 (314)
T ss_dssp             EEEEE--ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB---------
T ss_pred             EeccC--CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC---------
Confidence            33332  5679999988    55  799999888999998865 33321  122221     346666555         


Q ss_pred             CCceeEEeecCCccEEEEEEcC-CCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        319 KPSTFLLYAKGKPAIIKGLTFK-RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       319 ~~~~~l~~~~~~~~~I~~i~~~-~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                       +++.|++++...+.|.+++.+ +. ...  .+.. ....|.++++++.++.||+++...+.|++++++..
T Consensus       235 -~~G~l~v~~~~~~~i~~~d~~~g~-~~~--~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          235 -EDNNLLVANWGSSHIEVFGPDGGQ-PKM--RIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             -TTCCEEEEEETTTEEEEECTTCBS-CSE--EEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             -CCCCEEEEEcCCCEEEEEcCCCCc-EeE--EEeC-CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence             457788887656899999887 43 211  1222 23578999999988889999988889999998753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.54  E-value=1.8e-12  Score=125.21  Aligned_cols=253  Identities=13%  Similarity=0.096  Sum_probs=165.9

Q ss_pred             CceEEEEEcCCCCCceEEEEcCCCCe-EEEEEcCCCCCcEEEEeCCCCCceeEE------ecCccCceEEEEeCC---CC
Q psy14258        160 MEHCMIAIDLNLSKPRGIALDPTSGY-MFFTKWGATRPMLERSLLDGTERFPMV------THKIVYPYGVTVDFP---TK  229 (440)
Q Consensus       160 g~~~~~~~~~~~~~P~~iavd~~~g~-lywtd~~~~~~~I~r~~~dG~~~~~l~------~~~~~~P~gl~vD~~---~~  229 (440)
                      |-..+++ ...+..|.+|+++| .|. ||+++..   ++|.+.+.+|...+.+.      ......|.||++++.   ++
T Consensus         7 g~~~~~v-a~~l~~P~~i~~~p-dG~~l~V~e~~---G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g   81 (353)
T 2g8s_A            7 TVNVEVL-QDKLDHPWALAFLP-DNHGMLITLRG---GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR   81 (353)
T ss_dssp             CSEEEEE-EEEESSEEEEEECS-TTCCEEEEETT---TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC
T ss_pred             CcEEEEE-ECCCCCcEEEEEcC-CCCEEEEEeCC---ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCC
Confidence            3333444 34789999999999 577 9999975   69999998875432221      122446899999986   89


Q ss_pred             EEEEEeCC-------CCcEEEEEccCC-----CcEEEecC-----CccCceeeeeEecC-EEEEEecC------------
Q psy14258        230 HVYWVDTY-------LDFIDRINYDGT-----DRKTIRKG-----FPVQNLYDITVFEN-NLFVTSWR------------  279 (440)
Q Consensus       230 ~ly~~d~~-------~~~i~~~~~dG~-----~~~~i~~~-----~~~~~p~gl~~~~~-~ly~td~~------------  279 (440)
                      +||+++..       ..+|.++.+++.     ..+++...     ...+.|.+|++..| .||++...            
T Consensus        82 ~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~  161 (353)
T 2g8s_A           82 RIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDK  161 (353)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTS
T ss_pred             EEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCC
Confidence            99999864       457888888653     34444432     12345788998765 99999643            


Q ss_pred             -CCeEEEEeccCC------------CceEEE-ecCCCCeEEEEeccCCCCCCCCC-ceeEEeecCCcc---EEEEEEcCC
Q psy14258        280 -NQSIIRVNKFNS------------DDYETI-ANFSRPFAIHIYHRQKQPDALKP-STFLLYAKGKPA---IIKGLTFKR  341 (440)
Q Consensus       280 -~~~i~~~~~~~g------------~~~~~~-~~~~~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~~~---~I~~i~~~~  341 (440)
                       .++|.|++..+.            ...+++ .++.+|.++.+.          | .+.|++++....   .|.++...+
T Consensus       162 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d----------~~~g~l~~~d~g~~~~dei~~i~~G~  231 (353)
T 2g8s_A          162 LQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMN----------PWSNALWLNEHGPRGGDEINIPQKGK  231 (353)
T ss_dssp             CTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEE----------TTTTEEEEEEECSBSCEEEECCCTTC
T ss_pred             CCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEE----------CCCCCEEEEecCCCCCcEEeEeccCC
Confidence             358999998543            123344 355578898877          3 467888876532   555443222


Q ss_pred             C-CC---------------------Cceeeeee---cCCCCceEEEEEcC------CCEEEEEECCCCeEEEEecCCCCe
Q psy14258        342 D-GT---------------------TEQAIMPI---TDLKRPSVIDYHEK------EEYIYYAELTSYVIERRKMFGRGK  390 (440)
Q Consensus       342 ~-~~---------------------~~~~~~~~---~~~~~p~~l~~d~~------~~~vy~~d~~~~~I~r~~~~g~~~  390 (440)
                      . +.                     ......|+   .....|.+++|...      .+.+|+++...++|.++.+++...
T Consensus       232 nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~  311 (353)
T 2g8s_A          232 NYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV  311 (353)
T ss_dssp             BCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE
T ss_pred             cCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE
Confidence            1 00                     00011122   11236889999742      478999999999999999986421


Q ss_pred             ---EEEEECCCCCeeeEEEecCCCcEEEE-eCCCCeEEEEEe
Q psy14258        391 ---EVVIDTGIYNVEGMAVDWMANNLYWT-DAGIGTINVAKI  428 (440)
Q Consensus       391 ---~~~~~~~~~~~~glAvD~~~~~lYwt-d~~~~~I~~~~~  428 (440)
                         +.++......|.+|++++.+ .||++ |...++|.++..
T Consensus       312 ~~~~~~~~~~~~rp~~v~~~pdG-~lyv~td~~~g~I~ri~~  352 (353)
T 2g8s_A          312 TEDGRILTDRGQRIRDVRTGPDG-YLYVLTDESSGELLKVSP  352 (353)
T ss_dssp             EEEEEESGGGCCCEEEEEECTTS-CEEEEECSTTEEEEEEEC
T ss_pred             eeeEEcccCCCCceeEEEECCCC-cEEEEEeCCCCEEEEEeC
Confidence               22222223589999999855 69996 667788887754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.53  E-value=6.9e-11  Score=112.14  Aligned_cols=301  Identities=10%  Similarity=-0.039  Sum_probs=189.1

Q ss_pred             ccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecC--CceEE
Q psy14258         92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHY--MEHCM  164 (440)
Q Consensus        92 ~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~d--g~~~~  164 (440)
                      .+.+|+++...+.|+...++......        .+........|.+ ++++.++.||++    +.|.+.+++  +...+
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~   75 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALT--------LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT   75 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEE--------EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEE--------EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee
Confidence            46788887777888877775321100        0111234457889 999999889998    578887776  43333


Q ss_pred             EEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC-CCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcE
Q psy14258        165 IAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL-DGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFI  241 (440)
Q Consensus       165 ~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~-dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i  241 (440)
                      .+.. .....|.+++++|...+||++....  +.|...++ +|...+.+.. .....|.++++++.+..||+++...+.|
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  153 (343)
T 1ri6_A           76 FAAESALPGSLTHISTDHQGQFVFVGSYNA--GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI  153 (343)
T ss_dssp             EEEEEECSSCCSEEEECTTSSEEEEEETTT--TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred             eccccccCCCCcEEEEcCCCCEEEEEecCC--CeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEE
Confidence            2211 1123899999999877899998754  47777777 3332222221 2345689999999899999999778889


Q ss_pred             EEEEccC-CCcEEEe----cCCccCceeeeeEecC--EEEEEecCCCeEEEEecc--CCCceE--EEecCC-------CC
Q psy14258        242 DRINYDG-TDRKTIR----KGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKF--NSDDYE--TIANFS-------RP  303 (440)
Q Consensus       242 ~~~~~dG-~~~~~i~----~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~--~g~~~~--~~~~~~-------~p  303 (440)
                      ...+++. .....+.    .......|.++++..+  .+|+++...+.|..++..  +++...  .+....       .|
T Consensus       154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  233 (343)
T 1ri6_A          154 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  233 (343)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             EEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCc
Confidence            9988865 3333221    1111346888888754  799999888888888763  343321  222111       12


Q ss_pred             eEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEE
Q psy14258        304 FAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIER  382 (440)
Q Consensus       304 ~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r  382 (440)
                      .++.+.          |+ .+|+++....+.|..++++...........+.....|.++++++.++.||+++...+.|..
T Consensus       234 ~~i~~s----------~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v  303 (343)
T 1ri6_A          234 ADIHIT----------PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  303 (343)
T ss_dssp             EEEEEC----------TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             cceEEC----------CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEE
Confidence            234433          34 4788787666889999887431111222222333358999999999999999877788777


Q ss_pred             EecC--CCCeEEEEEC-CCCCeeeEEEecCCCc
Q psy14258        383 RKMF--GRGKEVVIDT-GIYNVEGMAVDWMANN  412 (440)
Q Consensus       383 ~~~~--g~~~~~~~~~-~~~~~~glAvD~~~~~  412 (440)
                      .+++  +...+.+... .-..|.+|+++...+.
T Consensus       304 ~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          304 YEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG  336 (343)
T ss_dssp             EEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred             EEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence            6554  3333333221 1267999999875543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.53  E-value=1.6e-11  Score=116.90  Aligned_cols=241  Identities=12%  Similarity=0.078  Sum_probs=166.0

Q ss_pred             eccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC--CCCcEEEEe
Q psy14258        130 ERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA--TRPMLERSL  202 (440)
Q Consensus       130 ~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~--~~~~I~r~~  202 (440)
                      ......|++ ++|..+ +|||+    +.|.+.++++...+.+.......|.+|++|+ .|.||+++...  ....|.+.+
T Consensus        41 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             ESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred             eccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEe
Confidence            345567889 999655 59987    6899999987665555433446799999998 58899998653  013899999


Q ss_pred             CCCCCceeEEec--CccCceEEEEeCCCCEEEEEeCC------CCcEEEEEccCCCcEEEecCCccCceeeeeEecC--E
Q psy14258        203 LDGTERFPMVTH--KIVYPYGVTVDFPTKHVYWVDTY------LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--N  272 (440)
Q Consensus       203 ~dG~~~~~l~~~--~~~~P~gl~vD~~~~~ly~~d~~------~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~  272 (440)
                      .++...+.++..  ....|+++++|+ .+++|+++..      ...|.+++.++.....+...  ...|.++++..+  .
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKV  195 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSE
T ss_pred             CCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCE
Confidence            988766544432  235799999995 5689998864      46799998877665555443  567999998755  7


Q ss_pred             EEEEecCCCeEEEEeccC-CCceEE-----EecC---CCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCC
Q psy14258        273 LFVTSWRNQSIIRVNKFN-SDDYET-----IANF---SRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDG  343 (440)
Q Consensus       273 ly~td~~~~~i~~~~~~~-g~~~~~-----~~~~---~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~  343 (440)
                      ||+++...+.|++++..+ ++....     ....   ..|.++.+.          +++.|++++...+.|.+++.++. 
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d----------~~G~l~v~~~~~~~v~~~d~~g~-  264 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID----------SDDNLYVAMYGQGRVLVFNKRGY-  264 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB----------TTCCEEEEEETTTEEEEECTTSC-
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC----------CCCCEEEEEcCCCEEEEECCCCC-
Confidence            999998888999998753 333221     1111   245566555          45678888765578999987654 


Q ss_pred             CCceeeeeecC-----CCCceEEEEEcCCCEEEEEECC-----CCeEEEEecCCC
Q psy14258        344 TTEQAIMPITD-----LKRPSVIDYHEKEEYIYYAELT-----SYVIERRKMFGR  388 (440)
Q Consensus       344 ~~~~~~~~~~~-----~~~p~~l~~d~~~~~vy~~d~~-----~~~I~r~~~~g~  388 (440)
                      ..  ..+....     +..|.++++++.++.||++...     .+.|+++++...
T Consensus       265 ~~--~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~~  317 (333)
T 2dg1_A          265 PI--GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK  317 (333)
T ss_dssp             EE--EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred             EE--EEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecccC
Confidence            11  1122221     1258899999877899998764     357888877654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.51  E-value=3.3e-11  Score=110.53  Aligned_cols=197  Identities=9%  Similarity=0.026  Sum_probs=142.7

Q ss_pred             cCceEEEEeCCCCEEEEEeC--CCCcEEEEEccC-CCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCc
Q psy14258        217 VYPYGVTVDFPTKHVYWVDT--YLDFIDRINYDG-TDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD  293 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~--~~~~i~~~~~dG-~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~  293 (440)
                      .+|.||++++. ++||.+..  ..+.|..+++.. .-...+..+. ..++.|+++.++.||++.|..+.+..++..+.+.
T Consensus        21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-SYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE
T ss_pred             CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-CcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE
Confidence            46899999855 79999975  367999999864 4344443332 4567789999999999999999999999987776


Q ss_pred             eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec----CCCCceEEEEEcCCCE
Q psy14258        294 YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT----DLKRPSVIDYHEKEEY  369 (440)
Q Consensus       294 ~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~----~~~~p~~l~~d~~~~~  369 (440)
                      ...+.-. .|.+..+.+.         ...||++++ .+.|..++.+.. .. ...+++.    .+..|.++++.  +++
T Consensus        99 ~~~i~~g-~~~g~glt~D---------g~~l~vs~g-s~~l~viD~~t~-~v-~~~I~Vg~~~~p~~~~nele~~--dg~  163 (266)
T 2iwa_A           99 IKNFTHQ-MKDGWGLATD---------GKILYGSDG-TSILYEIDPHTF-KL-IKKHNVKYNGHRVIRLNELEYI--NGE  163 (266)
T ss_dssp             EEEEECC-SSSCCEEEEC---------SSSEEEECS-SSEEEEECTTTC-CE-EEEEECEETTEECCCEEEEEEE--TTE
T ss_pred             EEEEECC-CCCeEEEEEC---------CCEEEEECC-CCeEEEEECCCC-cE-EEEEEECCCCcccccceeEEEE--CCE
Confidence            6655322 2333333321         356888885 588988887664 11 1223332    12357788887  579


Q ss_pred             EEEEECCCCeEEEEecCCCCeEEEEEC-CC------------CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        370 IYYAELTSYVIERRKMFGRGKEVVIDT-GI------------YNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       370 vy~~d~~~~~I~r~~~~g~~~~~~~~~-~~------------~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +|.+...++.|.++++........+.. ++            ..|.|||+|..++.||+|....++|.++++..
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            999998899999999976444333332 22            46899999999999999999999999999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.49  E-value=1.1e-10  Score=111.59  Aligned_cols=241  Identities=10%  Similarity=-0.009  Sum_probs=157.3

Q ss_pred             ccccccce-eeeecCCcEEEe------ceEEEEecCCceEEEEEc--CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEE
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP------EAIYFCTHYMEHCMIAID--LNLSKPRGIALDPTSGYMFFTKWGATRPMLERS  201 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~--~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~  201 (440)
                      .....|.+ |+++.++ ||++      +.|.+.++++...+.+..  .....|.+|+++|...+||.++...  +.|...
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~--~~v~v~  113 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK--GTAEVM  113 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT--TEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC--CEEEEE
Confidence            34578999 9999777 9988      368888887655443322  2356899999999777899998654  467776


Q ss_pred             eCCCCCceeEEe---c---------CccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEec--CCccCceeee
Q psy14258        202 LLDGTERFPMVT---H---------KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRK--GFPVQNLYDI  266 (440)
Q Consensus       202 ~~dG~~~~~l~~---~---------~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~--~~~~~~p~gl  266 (440)
                      +++.......+.   .         ....|.++++++.+. ||+++...+.|...+++ ......+..  ......|.++
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence            664322222211   1         113578899997776 99999988999998887 333332221  1113468889


Q ss_pred             eEecC--EEEEEecCCCeEEEEeccC--CCceE--EEecCC-------CCeEEEEeccCCCCCCCCCc-eeEEeecCCcc
Q psy14258        267 TVFEN--NLFVTSWRNQSIIRVNKFN--SDDYE--TIANFS-------RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPA  332 (440)
Q Consensus       267 ~~~~~--~ly~td~~~~~i~~~~~~~--g~~~~--~~~~~~-------~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~  332 (440)
                      ++..+  .+|+++...+.|..++...  ++...  .+....       .|.++.+.          |+ .+|+++....+
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s----------pdG~~l~v~~~~~~  262 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS----------HDGHFLYVSNRGYN  262 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC----------TTSCEEEEEEETTT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC----------CCCCEEEEEeCCCC
Confidence            98755  7999988888777666543  43221  122211       24445444          44 57888877668


Q ss_pred             EEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        333 IIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       333 ~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      .|..++++..+... ....+.. ...|.++++++.+++||+++...+.|....++
T Consensus       263 ~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          263 TLAVFAVTADGHLT-LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECGGGCEE-EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEECCCCcEE-EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            88888886432111 1112222 34689999999999999999888887777555

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.48  E-value=3.8e-11  Score=114.51  Aligned_cols=189  Identities=10%  Similarity=0.095  Sum_probs=132.2

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe--ceEEEEecC
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHY  159 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~d  159 (440)
                      +.+..+++.++.+||+|...+.|++++.++.....           +. .-..|.+ +++..++ +|++  ..|.+.+.+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-----------~~-~~~~v~~i~~~~dg~-l~v~~~~gl~~~d~~  117 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-----------HA-LPFMGSALAKISDSK-QLIASDDGLFLRDTA  117 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-----------EE-CSSCEEEEEEEETTE-EEEEETTEEEEEETT
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-----------EE-CCCcceEEEEeCCCe-EEEEECCCEEEEECC
Confidence            78889999889999999988899888776543211           11 1235777 8887654 6666  679999987


Q ss_pred             CceEEEEEcCC----CCCceEEEEcCCCCeEEEEEcCC----CCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258        160 MEHCMIAIDLN----LSKPRGIALDPTSGYMFFTKWGA----TRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV  231 (440)
Q Consensus       160 g~~~~~~~~~~----~~~P~~iavd~~~g~lywtd~~~----~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l  231 (440)
                      +...+.+....    ...|.++++|| .|.+|+++.+.    ....|++.+ +|...  .+......|+++++++.++.|
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~--~~~~~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVT--KLFADISIPNSICFSPDGTTG  193 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEE--EEEEEESSEEEEEECTTSCEE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEE--EeeCCCcccCCeEEcCCCCEE
Confidence            65555554321    23588999999 68899987531    115799998 65432  223345679999999888899


Q ss_pred             EEEeCCCCcEEEEEcc---C-C--CcEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEec
Q psy14258        232 YWVDTYLDFIDRINYD---G-T--DRKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNK  288 (440)
Q Consensus       232 y~~d~~~~~i~~~~~d---G-~--~~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~  288 (440)
                      |+++...+.|..++++   | .  ..+.+.. ......|.+++++.+ .||++.+..+.|.+++.
T Consensus       194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            9999988999999985   4 2  2233322 111356889988754 88888877777777765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=8.3e-12  Score=120.00  Aligned_cols=228  Identities=14%  Similarity=0.115  Sum_probs=154.2

Q ss_pred             cccce-eeeecCCcEEEe------c--eEEEEecCCceEEEE------EcCCCCCceEEEEcCCCCeEEEEEcCC----C
Q psy14258        134 LDGTE-RFPMVTHKIVYP------E--AIYFCTHYMEHCMIA------IDLNLSKPRGIALDPTSGYMFFTKWGA----T  194 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~------~--~I~~~~~dg~~~~~~------~~~~~~~P~~iavd~~~g~lywtd~~~----~  194 (440)
                      ..|.+ |+++.+ ++|++      +  +|.+.+ +|+.. ..      ....+..|.+|++|+. |.|||+|.+.    .
T Consensus        17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~-~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELT-QDGLI-PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEE-TTEEE-ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCC-CEEEEeCCCCCCceEEEEEC-CCCee-cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCC
Confidence            58999 999765 58988      2  677777 66422 11      0124678999999994 8999999762    2


Q ss_pred             CCcEEEEeCCCCC-ceeEEe-c----CccCceEEEEeCCCCEEEEEeC---CCCcEEEEEccCCCcEEEecC--------
Q psy14258        195 RPMLERSLLDGTE-RFPMVT-H----KIVYPYGVTVDFPTKHVYWVDT---YLDFIDRINYDGTDRKTIRKG--------  257 (440)
Q Consensus       195 ~~~I~r~~~dG~~-~~~l~~-~----~~~~P~gl~vD~~~~~ly~~d~---~~~~i~~~~~dG~~~~~i~~~--------  257 (440)
                       ++|.+.+++... .+.+.. .    ....|+++++|+.++++|++|.   ..+.|..++++......+..+        
T Consensus        93 -~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           93 -PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             -CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             -CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence             599999987433 333321 1    1246899999988899999998   778899998864333222211        


Q ss_pred             -------Ccc-------------CceeeeeEecC--EEEEEecCCCeEEEEeccC---CC--------ceEEEecCCCCe
Q psy14258        258 -------FPV-------------QNLYDITVFEN--NLFVTSWRNQSIIRVNKFN---SD--------DYETIANFSRPF  304 (440)
Q Consensus       258 -------~~~-------------~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~---g~--------~~~~~~~~~~p~  304 (440)
                             ..+             ..|.||++..+  .||+++...+.|++++...   +.        ..........|.
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                   001             24789999754  8999999888999997431   11        012222233566


Q ss_pred             EEEEeccCCCCCCCCCceeEEeecCCccEEEEEEc-CCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeE
Q psy14258        305 AIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTF-KRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI  380 (440)
Q Consensus       305 ~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~-~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I  380 (440)
                      ++++.          +++.||+++...++|.+++. ++. .  ........+..|.++++++. +.+|+++...+++
T Consensus       252 gia~d----------~~G~l~va~~~~~~V~~~d~~~G~-~--~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~~~~  314 (343)
T 2qe8_A          252 GISID----------KDHNIYVGDLAHSAIGVITSADRA-Y--KLLVTDEKLSWTDSFNFGSD-GYLYFDCNQLHHS  314 (343)
T ss_dssp             CEEEC----------TTCCEEEEEGGGTEEEEEETTTTE-E--EEEEECGGGSCEEEEEECTT-SCEEEEECCGGGS
T ss_pred             eEEEC----------CCCCEEEEccCCCeEEEEECCCCC-E--EEEEECCceecCCeeEECCC-CcEEEEeCccccc
Confidence            77666          46789999988899999998 554 1  11222223678999999985 6799998755444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.47  E-value=1.9e-10  Score=110.77  Aligned_cols=246  Identities=11%  Similarity=0.076  Sum_probs=161.4

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcC--CCCCcEEEEeCCCC--CceeEEe--cCccCceEEEEeCCCCEEEEEeCCCCcEEE
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWG--ATRPMLERSLLDGT--ERFPMVT--HKIVYPYGVTVDFPTKHVYWVDTYLDFIDR  243 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~--~~~~~I~r~~~dG~--~~~~l~~--~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~  243 (440)
                      ....|..++++|...+||.++..  .. +.|...+++..  ..+.+..  .....|..+++  .+++||.++...+.|..
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~-~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQ-AAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTT-CEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCC-CcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            56789999999987789999874  22 46655555432  2222222  23457899999  58899999988888888


Q ss_pred             EEccCC-Cc----EEEe-cC-------CccCceeeeeEecC--EEEEEecCCCeEEEEeccCCC-----c-e------EE
Q psy14258        244 INYDGT-DR----KTIR-KG-------FPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSD-----D-Y------ET  296 (440)
Q Consensus       244 ~~~dG~-~~----~~i~-~~-------~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~-----~-~------~~  296 (440)
                      .+++.. ..    ..+. .+       ....+|.++++..+  +||+++...+.|...+.....     . .      ..
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            887532 11    1111 11       11345688888754  799999888887766544322     1 1      11


Q ss_pred             --EecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCcee-eeee--cCCCCceEEEEEcCCCEE
Q psy14258        297 --IANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQA-IMPI--TDLKRPSVIDYHEKEEYI  370 (440)
Q Consensus       297 --~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~-~~~~--~~~~~p~~l~~d~~~~~v  370 (440)
                        ......|.++.+.          |+ .+|+++....+.|..++++.. ..... .++.  .+...|.++++++.+++|
T Consensus       205 ~~~~~~~~~~~~~~s----------pdg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l  273 (361)
T 3scy_A          205 FKVAPGSGPRHLIFN----------SDGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYL  273 (361)
T ss_dssp             EECCTTCCEEEEEEC----------TTSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred             eecCCCCCCeEEEEc----------CCCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEE
Confidence              1223356666554          34 478888766688988888743 11111 1111  123457899999999999


Q ss_pred             EEEECC-CCeEEEEecC--CCCeEEE--EECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        371 YYAELT-SYVIERRKMF--GRGKEVV--IDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       371 y~~d~~-~~~I~r~~~~--g~~~~~~--~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      |+++.. .++|...+++  ....+.+  +.. -..|.+|++++.++.||.++...+.|.+++++.
T Consensus       274 ~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          274 YASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             EEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            999987 7888887775  2222222  222 357999999999999999998889999987763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.47  E-value=7.2e-10  Score=107.57  Aligned_cols=266  Identities=12%  Similarity=0.072  Sum_probs=186.4

Q ss_pred             cEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEE
Q psy14258         93 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAI  167 (440)
Q Consensus        93 ~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~  167 (440)
                      +.+|++....+.|+..++.......          .+ ..-..|.+ ++.+.++.||++    +.|.+.++........+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~----------~~-~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~   70 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTA----------TI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV   70 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEE----------EE-ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEE----------Ee-ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE
Confidence            4577777777777666554322110          01 22345788 999888889888    78999998765544443


Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD  247 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d  247 (440)
                      ... ..|.+++++|...+||++....  +.|...++........+.. ...|.++++++.++.||++....+.|...++.
T Consensus        71 ~~~-~~v~~~~~spdg~~l~~~~~~~--~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           71 PAG-SSPQGVAVSPDGKQVYVTNMAS--STLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             ECS-SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ECC-CCccceEECCCCCEEEEEECCC--CEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            322 3899999999888899988654  5899999986544333332 34689999998888999999888999999986


Q ss_pred             CCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeE
Q psy14258        248 GTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFL  324 (440)
Q Consensus       248 G~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l  324 (440)
                      ..........  -..|.++++..+  .||++....+.|...+..+++....+.....+.++.+.          |+ .+|
T Consensus       147 ~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~----------~~g~~l  214 (391)
T 1l0q_A          147 TKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVN----------PEGTKA  214 (391)
T ss_dssp             TTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEEC----------TTSSEE
T ss_pred             CCcEEEEEec--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEEC----------CCCCEE
Confidence            5544333332  246788888644  88899888899999998777655555443345555443          23 467


Q ss_pred             EeecC--CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC
Q psy14258        325 LYAKG--KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG  389 (440)
Q Consensus       325 ~~~~~--~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~  389 (440)
                      +++..  ..+.|+.+++...    .....+.....|.++++++.++.+|++....+.|+..++....
T Consensus       215 ~~~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          215 YVTNVDKYFNTVSMIDTGTN----KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEEEECSSCCEEEEEETTTT----EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEecCcCCCcEEEEECCCC----eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            77653  4578998888655    2333333345688999999999999998889999999987543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.46  E-value=4.1e-11  Score=114.23  Aligned_cols=229  Identities=13%  Similarity=0.058  Sum_probs=153.9

Q ss_pred             eeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEE------cCCCCCceEEEEcCC---CCeEEEEEcCCC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAI------DLNLSKPRGIALDPT---SGYMFFTKWGAT  194 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~------~~~~~~P~~iavd~~---~g~lywtd~~~~  194 (440)
                      +.+++..|.+ |+++.++ ||++    ++|.+.+.++...+.+.      ..+...|.|||++|.   +|+||++.....
T Consensus        27 va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             eecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            5678999999 9998765 9998    67999887643333332      134567999999994   799998753222


Q ss_pred             CCcEEEEeCCCC--------CceeEEec----CccCceEEEEeCCCCEEEEEeC-------------CCCcEEEEEccCC
Q psy14258        195 RPMLERSLLDGT--------ERFPMVTH----KIVYPYGVTVDFPTKHVYWVDT-------------YLDFIDRINYDGT  249 (440)
Q Consensus       195 ~~~I~r~~~dG~--------~~~~l~~~----~~~~P~gl~vD~~~~~ly~~d~-------------~~~~i~~~~~dG~  249 (440)
                      ..+|.|..+++.        ..++++..    ....+..|++++ .++||++..             ..++|.+++.||+
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            259999999872        23444431    234567799995 568999942             3579999999997


Q ss_pred             --------CcEEEecCCccCceeeeeEec-CEEEEEecCCC---eEEEEeccCCCce------------------EEEec
Q psy14258        250 --------DRKTIRKGFPVQNLYDITVFE-NNLFVTSWRNQ---SIIRVNKFNSDDY------------------ETIAN  299 (440)
Q Consensus       250 --------~~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~---~i~~~~~~~g~~~------------------~~~~~  299 (440)
                              ..++...+  +++|+|++++. +.||++|.+..   .|.++.+  |...                  ..+..
T Consensus       185 ip~~nPf~~~~i~a~G--~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~--G~nyGwP~~~g~~~~~~~~~P~~~~~~  260 (347)
T 3das_A          185 PAPGNPFPGSPVYSYG--HRNVQGLAWDDKQRLFASEFGQDTWDELNAIKP--GDNYGWPEAEGKGGGSGFHDPVAQWST  260 (347)
T ss_dssp             BCTTCSSTTCCEEEBC--CSBCCEEEECTTCCEEEEECCSSSCEEEEEECT--TCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred             ccCCCCCCCCeEEeeC--CCCcceEEECCCCCEEEEecCCCCCceeeEEcC--CCEecCCcccCCCCCccccCCcEecCC
Confidence                    55555556  88999999986 49999997653   4544432  1110                  00111


Q ss_pred             C-CCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEEC
Q psy14258        300 F-SRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAEL  375 (440)
Q Consensus       300 ~-~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~  375 (440)
                      - ..|.++.++           ++.+|++..+..+|.++.+++.+...+....+.+ ..+|++|+.+++ +.||+++.
T Consensus       261 ~~~ap~G~~~~-----------~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD-G~lyv~td  326 (347)
T 3das_A          261 DEASPSGIAYA-----------EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG-DKLWLVTS  326 (347)
T ss_dssp             TTCCEEEEEEE-----------TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET-TEEEEEEC
T ss_pred             CCCCCcceEEE-----------cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC-CcEEEEEc
Confidence            1 145566666           3567888777789999999876211111223333 468999999995 67999964

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.46  E-value=6e-10  Score=113.82  Aligned_cols=323  Identities=9%  Similarity=0.030  Sum_probs=214.5

Q ss_pred             EeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEec--CC
Q psy14258         87 CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTH--YM  160 (440)
Q Consensus        87 ~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~--dg  160 (440)
                      ++++. +++|.+....+.|..++.....  .+      .  .+..+. .|.+ ++++.++.||++   +.|.+.++  ..
T Consensus       144 ~~~p~-~~~~vs~~~d~~V~v~D~~t~~--~~------~--~i~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t  211 (543)
T 1nir_A          144 DLDLP-NLFSVTLRDAGQIALVDGDSKK--IV------K--VIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE  211 (543)
T ss_dssp             CCCGG-GEEEEEEGGGTEEEEEETTTCC--EE------E--EEECST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             ccCCC-CEEEEEEcCCCeEEEEECCCce--EE------E--EEecCc-ccceEEECCCCCEEEEECCCCeEEEEECcCCC
Confidence            36664 6899999888888766543222  11      1  122222 3889 999999999999   78999999  33


Q ss_pred             ceEEEEEcCCCCCceEEEEcC----CCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-----------ccCceEEEEe
Q psy14258        161 EHCMIAIDLNLSKPRGIALDP----TSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-----------IVYPYGVTVD  225 (440)
Q Consensus       161 ~~~~~~~~~~~~~P~~iavd~----~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-----------~~~P~gl~vD  225 (440)
                      ..+..-+. .-..|++++++|    ..++||.++...  +.|...+.+.......+...           -.+|.++++.
T Consensus       212 ~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~--~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s  288 (543)
T 1nir_A          212 PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWP--PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS  288 (543)
T ss_dssp             CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEES--SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccC--CeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence            22222222 235799999999    888999998654  47877776533332233221           1257789999


Q ss_pred             CCCCEEEEEeCCCCcEEEEEccC-CCcE--EEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecC
Q psy14258        226 FPTKHVYWVDTYLDFIDRINYDG-TDRK--TIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANF  300 (440)
Q Consensus       226 ~~~~~ly~~d~~~~~i~~~~~dG-~~~~--~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~  300 (440)
                      +.+.++|++....+.|..+++.. ....  .+..   -..|.++++..+  ++|.+....+.|..++..+++....+...
T Consensus       289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g  365 (543)
T 1nir_A          289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  365 (543)
T ss_dssp             SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence            88999999999999999999854 3333  2322   356888888644  79999888899999999888766655433


Q ss_pred             CCCe---EEEEeccCCCCCCCCCc-eeEEeecC-CccEEEEEEcCCCCCC---ceeeeeecCC-CCceEEEEEcCCCEEE
Q psy14258        301 SRPF---AIHIYHRQKQPDALKPS-TFLLYAKG-KPAIIKGLTFKRDGTT---EQAIMPITDL-KRPSVIDYHEKEEYIY  371 (440)
Q Consensus       301 ~~p~---~~~v~~~~~qp~~~~~~-~~l~~~~~-~~~~I~~i~~~~~~~~---~~~~~~~~~~-~~p~~l~~d~~~~~vy  371 (440)
                      ..|.   +..+++         |+ +.++++.. ..+.|..++.+..+..   ......+.+. ..+..++++|.+++||
T Consensus       366 ~~ph~g~g~~~~~---------p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~  436 (543)
T 1nir_A          366 KTPHPGRGANFVH---------PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY  436 (543)
T ss_dssp             SSBCCTTCEEEEE---------TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEE
T ss_pred             CCCCCCCCcccCC---------CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEE
Confidence            2332   444443         33 56777654 4578999998773211   1222233322 2457899999999888


Q ss_pred             EEEC------CCCeEEEEecCCCC-e-EEE-------EECCCCCeeeEEEecCCCcEEEEeC----CCCeEEEEEeCCCe
Q psy14258        372 YAEL------TSYVIERRKMFGRG-K-EVV-------IDTGIYNVEGMAVDWMANNLYWTDA----GIGTINVAKISDFS  432 (440)
Q Consensus       372 ~~d~------~~~~I~r~~~~g~~-~-~~~-------~~~~~~~~~glAvD~~~~~lYwtd~----~~~~I~~~~~~g~~  432 (440)
                      ++..      ..++|..++.+... . +++       +..+-..+..++++..++.||++..    ..+.|.+.+....+
T Consensus       437 v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          437 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence            7652      25699999987433 2 333       1233467889999999999998853    35899999876534


Q ss_pred             eeEE
Q psy14258        433 IRKV  436 (440)
Q Consensus       433 ~~~~  436 (440)
                      ..++
T Consensus       517 ~~~~  520 (543)
T 1nir_A          517 LKAV  520 (543)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            3443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.45  E-value=1.6e-10  Score=110.09  Aligned_cols=238  Identities=15%  Similarity=0.132  Sum_probs=160.6

Q ss_pred             EEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe------cCccCceEEEEeCC---CCEEEEEeC
Q psy14258        166 AIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT------HKIVYPYGVTVDFP---TKHVYWVDT  236 (440)
Q Consensus       166 ~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~------~~~~~P~gl~vD~~---~~~ly~~d~  236 (440)
                      ++..++..|++|++.| .|.||+++...  ++|.+.+.++...+.+..      ....-|.||++++.   ++.||++..
T Consensus        26 ~va~gL~~P~~ia~~p-dG~llVter~~--G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           26 TVATGLNSPWGLAPLP-GGDLLVSSRDE--ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEECCCSSEEEEEECT-TSCEEEEETTT--CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             EeecCCCCceEEEEcC-CCcEEEEEecC--CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            4567899999999999 68999999843  699999876544433321      23567999999974   789998753


Q ss_pred             --CCCcEEEEEccCC--------CcEEEecC---CccCceeeeeEecC-EEEEEec-------------CCCeEEEEecc
Q psy14258        237 --YLDFIDRINYDGT--------DRKTIRKG---FPVQNLYDITVFEN-NLFVTSW-------------RNQSIIRVNKF  289 (440)
Q Consensus       237 --~~~~i~~~~~dG~--------~~~~i~~~---~~~~~p~gl~~~~~-~ly~td~-------------~~~~i~~~~~~  289 (440)
                        ..++|.++.+++.        ..++++.+   ...+....|++..| .||++.-             ..++|+|++..
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence              4568999988762        24555442   11334566888765 9999942             35899999985


Q ss_pred             CCC-------ceEEEe-cCCCCeEEEEeccCCCCCCCCCceeEEeecCCc---cEEEEEEcCCC-CC--------Cceee
Q psy14258        290 NSD-------DYETIA-NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP---AIIKGLTFKRD-GT--------TEQAI  349 (440)
Q Consensus       290 ~g~-------~~~~~~-~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~---~~I~~i~~~~~-~~--------~~~~~  349 (440)
                      +.-       ..++++ ++-+|.++.+.          |++.|++++...   ..|.++...+. +.        ..+..
T Consensus       183 G~ip~~nPf~~~~i~a~G~RNp~Gla~d----------p~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~  252 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGHRNVQGLAWD----------DKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH  252 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCCSBCCEEEEC----------TTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred             CCccCCCCCCCCeEEeeCCCCcceEEEC----------CCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence            330       233443 55578888766          356688887643   35666543322 00        01122


Q ss_pred             eeecC----CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC----eEEEEECCCCCeeeEEEecCCCcEEEEeCC
Q psy14258        350 MPITD----LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG----KEVVIDTGIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       350 ~~~~~----~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~----~~~~~~~~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                      .|+..    ...|.|++|-  ++.+|.+....++|.|+.+++..    .+.++......|.++++++ .+.||+++..
T Consensus       253 ~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td~  327 (347)
T 3das_A          253 DPVAQWSTDEASPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTSN  327 (347)
T ss_dssp             CCSEEECTTTCCEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEECT
T ss_pred             CCcEecCCCCCCCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEcC
Confidence            23321    2368899997  57899999999999999998653    2444443357899999998 4579999653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=2.6e-10  Score=108.64  Aligned_cols=236  Identities=14%  Similarity=0.023  Sum_probs=162.2

Q ss_pred             EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEE
Q psy14258        164 MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDR  243 (440)
Q Consensus       164 ~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~  243 (440)
                      +.+.......+.+.+.||..+.|||++...  .+|.+.+.++...+.+ .. -..|.+++++ ..+++|++.  .+.|..
T Consensus        41 ~~~~~~~~~~~egp~~~~~~~~l~~~d~~~--~~i~~~d~~~~~~~~~-~~-~~~v~~i~~~-~dg~l~v~~--~~gl~~  113 (326)
T 2ghs_A           41 RVLDETPMLLGEGPTFDPASGTAWWFNILE--RELHELHLASGRKTVH-AL-PFMGSALAKI-SDSKQLIAS--DDGLFL  113 (326)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGG--TEEEEEETTTTEEEEE-EC-SSCEEEEEEE-ETTEEEEEE--TTEEEE
T ss_pred             EEeeccCCCCCcCCeEeCCCCEEEEEECCC--CEEEEEECCCCcEEEE-EC-CCcceEEEEe-CCCeEEEEE--CCCEEE
Confidence            445554566799999999889999999875  5999999987654433 22 2468899998 457788776  345999


Q ss_pred             EEccCCCcEEEecC---CccCceeeeeEecC-EEEEEecC------CCeEEEEeccCCCceEEEecCCCCeEEEEeccCC
Q psy14258        244 INYDGTDRKTIRKG---FPVQNLYDITVFEN-NLFVTSWR------NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQK  313 (440)
Q Consensus       244 ~~~dG~~~~~i~~~---~~~~~p~gl~~~~~-~ly~td~~------~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~  313 (440)
                      ++.++...+.+...   .....|.+++++.+ .+|+++..      .+.|++++  +++...+......|.++.+.    
T Consensus       114 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s----  187 (326)
T 2ghs_A          114 RDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFS----  187 (326)
T ss_dssp             EETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEEC----
T ss_pred             EECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEc----
Confidence            99876665555431   11346788888865 88888753      46899888  45433343444456777655    


Q ss_pred             CCCCCCCc-eeEEeecCCccEEEEEEcCC-CC-C-Cc-eeeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        314 QPDALKPS-TFLLYAKGKPAIIKGLTFKR-DG-T-TE-QAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       314 qp~~~~~~-~~l~~~~~~~~~I~~i~~~~-~~-~-~~-~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                            ++ ..|++++...+.|.+++++. .+ . .. .....+. ....|.++++|+.+ .+|+++...+.|++++++|
T Consensus       188 ------~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g  260 (326)
T 2ghs_A          188 ------PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDG  260 (326)
T ss_dssp             ------TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTC
T ss_pred             ------CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCC
Confidence                  34 47888887778999999862 21 1 11 1122221 22468899999865 5999987788999999977


Q ss_pred             CCeEEEEECCCCCeeeEEEe-cCCCcEEEEeCCC
Q psy14258        388 RGKEVVIDTGIYNVEGMAVD-WMANNLYWTDAGI  420 (440)
Q Consensus       388 ~~~~~~~~~~~~~~~glAvD-~~~~~lYwtd~~~  420 (440)
                      .....+ ......|.+++++ ..++.||++....
T Consensus       261 ~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          261 NHIARY-EVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             CEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CEEEEE-ECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            543333 3344579999998 7788999997654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.42  E-value=2.5e-09  Score=109.22  Aligned_cols=333  Identities=8%  Similarity=-0.013  Sum_probs=212.6

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccc
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT  125 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~  125 (440)
                      ...+++++...   ++|..++.......-.++.... +.++++++.+++||.++.. +.|..++++....+.+      .
T Consensus       148 ~~~~~vs~~~d---~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~------~  216 (543)
T 1nir_A          148 PNLFSVTLRDA---GQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKV------A  216 (543)
T ss_dssp             GGEEEEEEGGG---TEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEE------E
T ss_pred             CCEEEEEEcCC---CeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEE------E
Confidence            34566666543   4588888775554433343332 8999999999999999987 7888777731121111      1


Q ss_pred             cceeeccccccce-eeee----cCCcEEEe----ceEEEEecCCceEEEEEcC-C----------CCCceEEEEcCCCCe
Q psy14258        126 RPMLERSLLDGTE-RFPM----VTHKIVYP----EAIYFCTHYMEHCMIAIDL-N----------LSKPRGIALDPTSGY  185 (440)
Q Consensus       126 ~v~~~~~~~~p~~-avD~----~~~~lY~~----~~I~~~~~dg~~~~~~~~~-~----------~~~P~~iavd~~~g~  185 (440)
                      .  + .....|.+ |+++    .++.||++    +.|.+.+.....+...+.. +          -..|.+|++.|..+.
T Consensus       217 ~--i-~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~  293 (543)
T 1nir_A          217 E--I-KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  293 (543)
T ss_dssp             E--E-ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             E--E-ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence            1  2 23457999 9999    89999988    6788888765444333332 1          125789999998888


Q ss_pred             EEEEEcCCCCCcEEEEeCCCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCce-
Q psy14258        186 MFFTKWGATRPMLERSLLDGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNL-  263 (440)
Q Consensus       186 lywtd~~~~~~~I~r~~~dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p-  263 (440)
                      +|++....  ++|...+.+......+.. ..-.+|.++++|+.+++||.+....+.|..++...............+|| 
T Consensus       294 ~~vs~~~~--g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g  371 (543)
T 1nir_A          294 FIVNVKET--GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  371 (543)
T ss_dssp             EEEEETTT--TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred             EEEEECCC--CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence            88888665  699999986433222111 12357999999999999999998889999999865443332231124455 


Q ss_pred             eeeeEe---cCEEEEEec-CCCeEEEEeccC-------CCceEEEecCC-CCeEEEEeccCCCCCCCCCc-eeEEeecC-
Q psy14258        264 YDITVF---ENNLFVTSW-RNQSIIRVNKFN-------SDDYETIANFS-RPFAIHIYHRQKQPDALKPS-TFLLYAKG-  329 (440)
Q Consensus       264 ~gl~~~---~~~ly~td~-~~~~i~~~~~~~-------g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~~~~~-  329 (440)
                      .++.+.   ++.+|.+.. ..+.|..++..+       .+....+.... .+..++ +|         |+ .+|+++.. 
T Consensus       372 ~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~-~~---------pdg~~l~v~~~~  441 (543)
T 1nir_A          372 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK-TH---------PKSSHLYVDTTF  441 (543)
T ss_dssp             TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE-CC---------TTCCEEEECCTT
T ss_pred             CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE-cC---------CCCCcEEEecCC
Confidence            355543   257888875 567888888766       44444444322 234444 33         34 45666541 


Q ss_pred             C-----ccEEEEEEcCCCCCCceeeeeec-------CCCCceEEEEEcCCCEEEEEEC----CCCeEEEEecCCCCeEEE
Q psy14258        330 K-----PAIIKGLTFKRDGTTEQAIMPIT-------DLKRPSVIDYHEKEEYIYYAEL----TSYVIERRKMFGRGKEVV  393 (440)
Q Consensus       330 ~-----~~~I~~i~~~~~~~~~~~~~~~~-------~~~~p~~l~~d~~~~~vy~~d~----~~~~I~r~~~~g~~~~~~  393 (440)
                      +     ...|..++++.. ...-..+++.       +..++..++|++.++.||++..    ..+.|...+.........
T Consensus       442 ~~~~~~~~~v~v~d~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  520 (543)
T 1nir_A          442 NPDARISQSVAVFDLKNL-DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV  520 (543)
T ss_dssp             CSSHHHHTCEEEEETTCT-TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             CCCcccCceEEEEECCCC-CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence            1     258899998765 2221233331       2356779999999999999864    368999988775433333


Q ss_pred             EE-CCCCCeeeEE
Q psy14258        394 ID-TGIYNVEGMA  405 (440)
Q Consensus       394 ~~-~~~~~~~glA  405 (440)
                      +. ..+..|.|.-
T Consensus       521 i~~~~~~~p~g~~  533 (543)
T 1nir_A          521 VKDPRLITPTGKF  533 (543)
T ss_dssp             ECCTTCCSEEEEE
T ss_pred             ecCCCccCCCeee
Confidence            32 4467788754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=3e-10  Score=111.57  Aligned_cols=276  Identities=13%  Similarity=0.092  Sum_probs=169.4

Q ss_pred             cCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcC--------CCCCcEEEEeCCCC
Q psy14258        143 VTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG--------ATRPMLERSLLDGT  206 (440)
Q Consensus       143 ~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~--------~~~~~I~r~~~dG~  206 (440)
                      ..+.+|++        +.|.+.|++......-+..+ ..| +|+++|..++||.++..        .. ..|...+....
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P-gia~SpDgk~lyVan~~~~~~~~G~~~-~~VsviD~~t~  159 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP-HPVAAEDGSFFAQASTVFERIARGKRT-DYVEVFDPVTF  159 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEE-EEEEEECTTTC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC-ceEECCCCCEEEEEeccccccccCCCC-CEEEEEECCCC
Confidence            45668988        27888888765544333333 468 99999999999999852        11 36888877543


Q ss_pred             Cce-eEEec------CccCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCCc-EEEecCCccCceeeeeEecCEEEEEe
Q psy14258        207 ERF-PMVTH------KIVYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFENNLFVTS  277 (440)
Q Consensus       207 ~~~-~l~~~------~~~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~~ly~td  277 (440)
                      ... .+...      ....|.++++++.+++||+++.. .+.|..+|...... ..+..+    ...++.-.+...|++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~----g~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP----DCYHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----SEEEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC----CceeeccCCCcEEEEE
Confidence            322 22111      02469999999999999999875 67899998765332 233221    1122333345677777


Q ss_pred             cCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCC------CCceeEEeecCCccEEEEEEcCCCCCCce-eee
Q psy14258        278 WRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDAL------KPSTFLLYAKGKPAIIKGLTFKRDGTTEQ-AIM  350 (440)
Q Consensus       278 ~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~------~~~~~l~~~~~~~~~I~~i~~~~~~~~~~-~~~  350 (440)
                      ..++++..++..+++......        .++....+|...      .++..++.+..  +.+..+++.+. ...- ...
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~--------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~--g~V~ViD~~~~-~~~v~~~~  304 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNT--------EVFHTEDELLINHPAFSLRSGRLVWPTYT--GKIFQADLTAE-GATFRAPI  304 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEEC--------CCCSCTTSCBCSCCEECTTTCEEEEEBTT--SEEEEEEECSS-CEEECCCE
T ss_pred             cCCCCEEEEECCCCcEEEEee--------eeeccCCCceeeEeeecCCCCEEEEEeCC--CcEEEEeccCC-ceEEeeee
Confidence            777777777764444332211        111111112110      12344555543  78888888654 1000 000


Q ss_pred             ee------cCCCCceE---EEEEcCCCEEEEEEC---------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCC-
Q psy14258        351 PI------TDLKRPSV---IDYHEKEEYIYYAEL---------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN-  411 (440)
Q Consensus       351 ~~------~~~~~p~~---l~~d~~~~~vy~~d~---------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~-  411 (440)
                      ++      .....|.+   +++++.++++|+++.         ..+.|..+++.......-+..+ ..|.||++++.++ 
T Consensus       305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~  383 (426)
T 3c75_H          305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEP  383 (426)
T ss_dssp             ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSC
T ss_pred             eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCE
Confidence            10      00012444   899999999999974         2468999998864432222222 3699999999999 


Q ss_pred             cEEEEeCCCCeEEEEEeCCCeeeEEe
Q psy14258        412 NLYWTDAGIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       412 ~lYwtd~~~~~I~~~~~~g~~~~~~l  437 (440)
                      .||.++...+.|.++++...+..+.|
T Consensus       384 ~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          384 LLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99999988999999998764544443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.41  E-value=2.6e-09  Score=103.70  Aligned_cols=279  Identities=9%  Similarity=0.027  Sum_probs=168.4

Q ss_pred             ecCCcEEEe-c-------eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC-------CCCcEEEEeCCCC
Q psy14258        142 MVTHKIVYP-E-------AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA-------TRPMLERSLLDGT  206 (440)
Q Consensus       142 ~~~~~lY~~-~-------~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~-------~~~~I~r~~~dG~  206 (440)
                      +..+.+|++ .       .|.+++.+......-+..+ ..| +|++.|..++||.++...       ....|.+.+....
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            345668887 3       7788887754433223333 458 999999989999998421       0146888887532


Q ss_pred             CceeEEecC-------ccCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCCcEEE-ecCCccCceeeeeEecCEEEEEe
Q psy14258        207 ERFPMVTHK-------IVYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTDRKTI-RKGFPVQNLYDITVFENNLFVTS  277 (440)
Q Consensus       207 ~~~~l~~~~-------~~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~~~~i-~~~~~~~~p~gl~~~~~~ly~td  277 (440)
                      ....-+...       ...|.++++++.+++||+++.. .+.|..++ ........ ..   +.....+.-.+...|++.
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~---~~~~~~~~~~~~~~~~~~  183 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS---SPTCYHIHPGAPSTFYLL  183 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC---CCceEEEEeCCCceEEEE
Confidence            221111111       2468999999999999999865 67899998 65433211 11   212222222345788888


Q ss_pred             cCCCeEEEEeccCCCceEEEe-----cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee
Q psy14258        278 WRNQSIIRVNKFNSDDYETIA-----NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI  352 (440)
Q Consensus       278 ~~~~~i~~~~~~~g~~~~~~~-----~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~  352 (440)
                      +.++++..++. +++......     ....|...   ++...+   ..+..++++..  +.+..+++.+....-...+.+
T Consensus       184 ~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~---~~~~~~---~~~~~~~~~~~--~~v~vid~~~~~~~v~~~~~~  254 (373)
T 2mad_H          184 CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLT---QPAQAN---KSGRIVWPVYS--GKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             cCCCCEEEEEC-CCcEEEEEeccccccCCcceee---cceeEe---cCCEEEEEcCC--ceEEEEeccCCcceEeeeeee
Confidence            88899888888 776553221     00111111   100000   11234455433  688888886541110001111


Q ss_pred             ------cCCCCceE---EEEEcCCCEEEEEEC---------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCC-cE
Q psy14258        353 ------TDLKRPSV---IDYHEKEEYIYYAEL---------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN-NL  413 (440)
Q Consensus       353 ------~~~~~p~~---l~~d~~~~~vy~~d~---------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~-~l  413 (440)
                            .....|.+   +++++.++++|++..         ..+.|..+++.......-+..+ ..|.+|++++.++ .|
T Consensus       255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l  333 (373)
T 2mad_H          255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDL  333 (373)
T ss_pred             cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEE
Confidence                  01113444   889999999999864         2468999999864332223333 4699999999998 78


Q ss_pred             EEEeCCCCeEEEEEeCCCeeeEE
Q psy14258        414 YWTDAGIGTINVAKISDFSIRKV  436 (440)
Q Consensus       414 Ywtd~~~~~I~~~~~~g~~~~~~  436 (440)
                      |.++.+.+.|.++++...+..+.
T Consensus       334 ~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          334 YALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEcCCCCeEEEEECCCCCEEee
Confidence            88887889999999986444444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.39  E-value=2.5e-10  Score=104.68  Aligned_cols=197  Identities=9%  Similarity=0.034  Sum_probs=140.1

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC-ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC-C
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG-T  249 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~-~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG-~  249 (440)
                      ..|+||++++. |.||.+......++|.+.++.... ...+-......+.|++++  +++||+++...+.+..+|... .
T Consensus        21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred             CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence            46899999985 899999742111599999996433 322222233456688887  789999999999999999763 3


Q ss_pred             CcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEe-c-----CCCCeEEEEeccCCCCCCCCCcee
Q psy14258        250 DRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-N-----FSRPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       250 ~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~-~-----~~~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      ....+..+  ...+.|++.+++++|.++ .++.|..+|..+.+....+. +     ...|.++...           ++.
T Consensus        98 v~~~i~~g--~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-----------dg~  163 (266)
T 2iwa_A           98 NIKNFTHQ--MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-----------NGE  163 (266)
T ss_dssp             EEEEEECC--SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-----------TTE
T ss_pred             EEEEEECC--CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-----------CCE
Confidence            33343323  246678888888999999 68999999998877665443 1     1135566544           356


Q ss_pred             EEeecCCccEEEEEEcCCCCCCceeeeeecC------------CCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPITD------------LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~------------~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      ||++....+.|.+|++... .. ...+++.+            ...|.||+||+.++++|++....++++.+++..
T Consensus       164 lyvn~~~~~~V~vID~~tg-~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDG-TL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEETTSSEEEEEETTTC-CE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEecCCCCeEEEEECCCC-cE-EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            8887766689999998765 21 12333332            246789999999999999999999999998864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.38  E-value=1.7e-09  Score=106.49  Aligned_cols=279  Identities=12%  Similarity=0.074  Sum_probs=187.7

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEe
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCT  157 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~  157 (440)
                      +.++++++ ++++|++....+.|+..++........    . +...+......+.+ ++++ .+++|++    +.|.+.+
T Consensus       125 ~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~----~-~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d  197 (433)
T 3bws_A          125 PKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRL----S-PPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFD  197 (433)
T ss_dssp             BCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEE----C-CCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEE
T ss_pred             ceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeee----c-CcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEE
Confidence            67889998 789999988878888777653322110    0 00001112223455 6543 4457777    6899999


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC-
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT-  236 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~-  236 (440)
                      ++.......+......|.+++++|...+||.+....  +.|...+++.......+. ....|.++++++.++.||.+.. 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          198 LKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWIS--EDISVIDRKTKLEIRKTD-KIGLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             TTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEECC-CCSEEEEEEECTTSSEEEEEEEE
T ss_pred             CCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCC--CcEEEEECCCCcEEEEec-CCCCceEEEEcCCCCEEEEEECC
Confidence            887554444444556899999999888899988654  589999986543322222 2345899999988889998875 


Q ss_pred             ------CCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEE
Q psy14258        237 ------YLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHI  308 (440)
Q Consensus       237 ------~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v  308 (440)
                            ..+.|...++...........  ...|.++++..+  .+|++....+.|...+..+++....+.....|.++.+
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~  352 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTIGP--PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIAL  352 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEEEE--EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeeccC--CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEE
Confidence                  345788888765443332221  236778887644  7999988899999999877766555554445666655


Q ss_pred             eccCCCCCCCCCc-eeEEeecCCc--------------cEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEE
Q psy14258        309 YHRQKQPDALKPS-TFLLYAKGKP--------------AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       309 ~~~~~qp~~~~~~-~~l~~~~~~~--------------~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~  373 (440)
                      .          |+ .+|+++....              +.|+.+++...    .....+.....|.++++++.++.||.+
T Consensus       353 s----------~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          353 S----------PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD----TVKEFWEAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             C----------TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT----EEEEEEECSSSEEEEEECTTSCEEEEE
T ss_pred             c----------CCCCEEEEEecCCCccccccccccccceEEEEEECCCC----cEEEEecCCCCCceEEEcCCCCEEEEE
Confidence            5          23 4566665532              48888887654    333333444578999999999999999


Q ss_pred             ECCCCeEEEEecCC
Q psy14258        374 ELTSYVIERRKMFG  387 (440)
Q Consensus       374 d~~~~~I~r~~~~g  387 (440)
                      +...++|+..++++
T Consensus       419 ~~~d~~i~v~~~~~  432 (433)
T 3bws_A          419 DFLDHQIRVYRRDG  432 (433)
T ss_dssp             ETTTTEEEEEEETT
T ss_pred             ECCCCeEEEEEecC
Confidence            87789998888765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.37  E-value=2.6e-09  Score=102.71  Aligned_cols=281  Identities=11%  Similarity=-0.030  Sum_probs=172.8

Q ss_pred             EEEEEeeecccEEEEEEcC---CCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-c------
Q psy14258         83 AIYFCTHYMEHCMIAIDLN---LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-E------  151 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~---~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-~------  151 (440)
                      |...+......++|+....   .+.|+...++....+.       ..+... ....|.. |+++.++.||.+ .      
T Consensus         4 p~~~~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~-------~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~   75 (361)
T 3scy_A            4 PTDPSTTDSELTMLVGTYTSGNSKGIYTFRFNEETGES-------LPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQA   75 (361)
T ss_dssp             --CCCGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCE-------EEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred             CCChhhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCE-------EEeecc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence            3334444444566666543   2456665555322111       011112 5678999 999999989998 2      


Q ss_pred             eEEEEecCC--ceEEEEE--cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc--ee--EEe-c--------
Q psy14258        152 AIYFCTHYM--EHCMIAI--DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER--FP--MVT-H--------  214 (440)
Q Consensus       152 ~I~~~~~dg--~~~~~~~--~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~--~~--l~~-~--------  214 (440)
                      .|.+.+++.  ...+.+.  ......|..+++  ..++||.++...  +.|...+++....  ..  ... .        
T Consensus        76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~--~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~  151 (361)
T 3scy_A           76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSG--GSITVFPIGQDGALLPASDVIEFKGSGPDKER  151 (361)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTT--TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTT
T ss_pred             cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCC--CEEEEEEeCCCCcCcccceeEEccCCCCCccc
Confidence            676665543  2333222  223468999999  357899998765  5788887753221  11  111 1        


Q ss_pred             -CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC-------cEE-----EecCCccCceeeeeEecC--EEEEEecC
Q psy14258        215 -KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD-------RKT-----IRKGFPVQNLYDITVFEN--NLFVTSWR  279 (440)
Q Consensus       215 -~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~-------~~~-----i~~~~~~~~p~gl~~~~~--~ly~td~~  279 (440)
                       ...+|.++++++.+++||+++...+.|...+++...       ...     .........|.++++..+  .+|+++..
T Consensus       152 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  231 (361)
T 3scy_A          152 QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI  231 (361)
T ss_dssp             CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence             123468899999888999999988988888876432       211     111112457889998755  79999988


Q ss_pred             CCeEEEEeccCCCceEE--EecC----CCCeEEEEeccCCCCCCCCCc-eeEEeecCC-ccEEEEEEcCCC-CCCceeee
Q psy14258        280 NQSIIRVNKFNSDDYET--IANF----SRPFAIHIYHRQKQPDALKPS-TFLLYAKGK-PAIIKGLTFKRD-GTTEQAIM  350 (440)
Q Consensus       280 ~~~i~~~~~~~g~~~~~--~~~~----~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~-~~~I~~i~~~~~-~~~~~~~~  350 (440)
                      .+.|..++..+++...+  +...    ..|.++.+.          |+ .+|++++.. .+.|..++++.. +... ...
T Consensus       232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s----------pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~-~~~  300 (361)
T 3scy_A          232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS----------PDGKYLYASNRLKADGVAIFKVDETNGTLT-KVG  300 (361)
T ss_dssp             TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC----------TTSSEEEEEECSSSCEEEEEEECTTTCCEE-EEE
T ss_pred             CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC----------CCCCEEEEECCCCCCEEEEEEEcCCCCcEE-Eee
Confidence            88888888765543222  2211    234455544          34 578888776 678888887633 1111 111


Q ss_pred             eecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        351 PITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       351 ~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      .+..-..|.++++++.+++||+++...+.|....++
T Consensus       301 ~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          301 YQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             EecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            222235789999999999999999888888776555

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.33  E-value=1.4e-08  Score=103.78  Aligned_cols=324  Identities=9%  Similarity=-0.015  Sum_probs=208.3

Q ss_pred             eeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEecC---C
Q psy14258         88 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHY---M  160 (440)
Q Consensus        88 ~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~d---g  160 (440)
                      .|+ .+.+|++....+.|..++.....+..        .  + .....|.+ ++++.++.+|++   +.|.+.++.   +
T Consensus       163 ~d~-~~~~~V~~~~~~~V~viD~~t~~v~~--------~--i-~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~  230 (567)
T 1qks_A          163 WDL-ENLFSVTLRDAGQIALIDGSTYEIKT--------V--L-DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP  230 (567)
T ss_dssp             CCG-GGEEEEEETTTTEEEEEETTTCCEEE--------E--E-ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             cCC-CceEEEEeCCCCeEEEEECCCCeEEE--------E--E-eCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC
Confidence            454 47899999988888776654332111        1  1 22346889 999999999998   689999994   3


Q ss_pred             ceEEEEEcCCCCCceEEEEc----CCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-----------ccCceEEEEe
Q psy14258        161 EHCMIAIDLNLSKPRGIALD----PTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-----------IVYPYGVTVD  225 (440)
Q Consensus       161 ~~~~~~~~~~~~~P~~iavd----~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-----------~~~P~gl~vD  225 (440)
                      +....+- .+ ..|++|+++    |..+++|.++...  +.|...+.........+...           ...+.++...
T Consensus       231 ~~v~~i~-~G-~~P~~ia~s~~~~pDGk~l~v~n~~~--~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s  306 (567)
T 1qks_A          231 TTVAEIK-IG-SEARSIETSKMEGWEDKYAIAGAYWP--PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS  306 (567)
T ss_dssp             CEEEEEE-CC-SEEEEEEECCSTTCTTTEEEEEEEET--TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             cEeEEEe-cC-CCCceeEEccccCCCCCEEEEEEccC--CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc
Confidence            3333332 22 469999999    5677999998776  47887765432222222211           1145677777


Q ss_pred             CCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEec-CC-
Q psy14258        226 FPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIAN-FS-  301 (440)
Q Consensus       226 ~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~~-~~-  301 (440)
                      +....++++....+.|..+++.......+..-..-.+|.++.++.  .++|.++..++.|..++..+++....+.- .. 
T Consensus       307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~  386 (567)
T 1qks_A          307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT  386 (567)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred             CCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence            677788888888899999998654322222100134666666654  58999999999999999988876554433 22 


Q ss_pred             -CC-eEEEEeccCCCCCCCCCc-eeEEeec-CCccEEEEEEcCCCCCC---ceeeeeecCC-CCceEEEEEcCCCEEEEE
Q psy14258        302 -RP-FAIHIYHRQKQPDALKPS-TFLLYAK-GKPAIIKGLTFKRDGTT---EQAIMPITDL-KRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       302 -~p-~~~~v~~~~~qp~~~~~~-~~l~~~~-~~~~~I~~i~~~~~~~~---~~~~~~~~~~-~~p~~l~~d~~~~~vy~~  373 (440)
                       +| .+..+++         |+ +.++++. ...+.|..|+.+.....   -.+...+... ..+..|..++.+.++|++
T Consensus       387 Phpg~g~~~~~---------p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~  457 (567)
T 1qks_A          387 PHPGRGANFVH---------PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD  457 (567)
T ss_dssp             BCCTTCEEEEE---------TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred             CCCccceeeEC---------CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEe
Confidence             33 2555555         33 4566554 34478999988763211   1222222222 234678899999999887


Q ss_pred             ECC------CCeEEEEecCCC-----Ce--EEEEE-------CCCCCeeeEEEecCCCcEEEEeC----CCCeEEEEEeC
Q psy14258        374 ELT------SYVIERRKMFGR-----GK--EVVID-------TGIYNVEGMAVDWMANNLYWTDA----GIGTINVAKIS  429 (440)
Q Consensus       374 d~~------~~~I~r~~~~g~-----~~--~~~~~-------~~~~~~~glAvD~~~~~lYwtd~----~~~~I~~~~~~  429 (440)
                      ...      .++|..++.+..     ..  +++..       .+-..|..++++..++.||++..    ..+.|.+++..
T Consensus       458 ~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~  537 (567)
T 1qks_A          458 ATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  537 (567)
T ss_dssp             CTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             cCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence            632      458999987643     21  33311       13357899999999999999964    36899998876


Q ss_pred             CCeeeEE
Q psy14258        430 DFSIRKV  436 (440)
Q Consensus       430 g~~~~~~  436 (440)
                      .....++
T Consensus       538 t~~~~~~  544 (567)
T 1qks_A          538 TLELKHV  544 (567)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEE
Confidence            5333333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.33  E-value=3e-09  Score=102.76  Aligned_cols=277  Identities=11%  Similarity=0.087  Sum_probs=163.2

Q ss_pred             eeecCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC-------CCCcEEEEeCC
Q psy14258        140 FPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA-------TRPMLERSLLD  204 (440)
Q Consensus       140 vD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~-------~~~~I~r~~~d  204 (440)
                      .++.++.+|++        ++|.+.+.+......-+..+ ..|. |+++|...+||.++...       ....|.+.+..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            34567788988        36888888765543333333 3475 99999988999998420       00357777776


Q ss_pred             CCCceeEEecC-------ccCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCC-cEEEecCCccCceeeeeEecCEEEE
Q psy14258        205 GTERFPMVTHK-------IVYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTD-RKTIRKGFPVQNLYDITVFENNLFV  275 (440)
Q Consensus       205 G~~~~~l~~~~-------~~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~~~ly~  275 (440)
                      ......-+..+       ...|.++++++.+++||+++.. .+.|..+|..... ...+..    ....++.-.+.+.|+
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~g~~~~~P~g~~~~~  193 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----PDCYHIFPTAPDTFF  193 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSEEEEEEEETTEEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----CCcceeecCCCceeE
Confidence            43322222111       2379999999999999999874 6889999876443 333322    111222212223333


Q ss_pred             EecCCCeEEEEeccC-CCceEEEecCCCCeEEEEeccCCCCCCCC-----Cce-eEEeecCCccEEEEEEcCCCCCCcee
Q psy14258        276 TSWRNQSIIRVNKFN-SDDYETIANFSRPFAIHIYHRQKQPDALK-----PST-FLLYAKGKPAIIKGLTFKRDGTTEQA  348 (440)
Q Consensus       276 td~~~~~i~~~~~~~-g~~~~~~~~~~~p~~~~v~~~~~qp~~~~-----~~~-~l~~~~~~~~~I~~i~~~~~~~~~~~  348 (440)
                      +....+++..++..+ ++......        +++.+...|...+     +++ ++|++..  +.|+.+++.+. ... .
T Consensus       194 ~~~~DG~~~~v~~~~~g~v~~~~~--------~~~~~~~~~~~~~~~~~~~dG~~~~vs~~--g~V~v~d~~~~-~~~-v  261 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTEGTPEITHT--------EVFHPEDEFLINHPAYSQKAGRLVWPTYT--GKIHQIDLSSG-DAK-F  261 (386)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEEC--------CCCSCTTSCBCSCCEEETTTTEEEEEBTT--SEEEEEECTTS-SCE-E
T ss_pred             EECCCCCEEEEECCCCCeEEEeec--------ceeccccccccccceeEcCCCcEEEEeCC--CEEEEEECCCC-cce-e
Confidence            433444444444433 22211110        1122222222211     244 5666665  88999998765 111 1


Q ss_pred             eeeec--------CCCCce---EEEEEcCCCEEEEEEC---------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEec
Q psy14258        349 IMPIT--------DLKRPS---VIDYHEKEEYIYYAEL---------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDW  408 (440)
Q Consensus       349 ~~~~~--------~~~~p~---~l~~d~~~~~vy~~d~---------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~  408 (440)
                      ..++.        .--.|.   .+++++.++++|++..         ..++|..+++.......-+..+ ..|.+|+++.
T Consensus       262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~  340 (386)
T 3sjl_D          262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ  340 (386)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECS
T ss_pred             ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECC
Confidence            11111        001122   4788999999999963         2478999999865433322222 3689999999


Q ss_pred             CCC-cEEEEeCCCCeEEEEEeCCCeeeE
Q psy14258        409 MAN-NLYWTDAGIGTINVAKISDFSIRK  435 (440)
Q Consensus       409 ~~~-~lYwtd~~~~~I~~~~~~g~~~~~  435 (440)
                      .++ .||.++...+.|.+++.......+
T Consensus       341 D~~~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          341 DEKPLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence            887 689999999999999986533333

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.33  E-value=1.3e-10  Score=111.14  Aligned_cols=209  Identities=11%  Similarity=0.101  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCCceEEEEcCCCCeEEEEEc--C--------CCCCcEEEEeCCCC--CceeEEecC------ccCceEEE
Q psy14258        162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKW--G--------ATRPMLERSLLDGT--ERFPMVTHK------IVYPYGVT  223 (440)
Q Consensus       162 ~~~~~~~~~~~~P~~iavd~~~g~lywtd~--~--------~~~~~I~r~~~dG~--~~~~l~~~~------~~~P~gl~  223 (440)
                      .|+.| ......|++|+++| +|.+|.+..  .        ...++|.+.+++..  ..+.+...+      ..+|.||.
T Consensus        41 ~C~~i-~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~  118 (355)
T 3sre_A           41 NCNLV-KGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGIS  118 (355)
T ss_dssp             CEEEC-TTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEE
T ss_pred             CCEEe-CCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeE
Confidence            56554 32245799999998 799999961  1        01278999999843  222332222      25899999


Q ss_pred             EeC---CCCEEEEEeCC--CCcEEEEEc--cCCCcEEEec--CCccCceeeeeEecC-EEEEEecC--CCeEEEEeccCC
Q psy14258        224 VDF---PTKHVYWVDTY--LDFIDRINY--DGTDRKTIRK--GFPVQNLYDITVFEN-NLFVTSWR--NQSIIRVNKFNS  291 (440)
Q Consensus       224 vD~---~~~~ly~~d~~--~~~i~~~~~--dG~~~~~i~~--~~~~~~p~gl~~~~~-~ly~td~~--~~~i~~~~~~~g  291 (440)
                      +..   .+.+||++++.  .+.|+...+  ++.....+..  +..+..|..++++.+ .+|+++..  +...+       
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~-------  191 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL-------  191 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH-------
T ss_pred             EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc-------
Confidence            964   24589999987  446555554  4443333322  445788999999865 88888641  11000       


Q ss_pred             CceEEEecCCCCeEEEEecc-CCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258        292 DDYETIANFSRPFAIHIYHR-QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI  370 (440)
Q Consensus       292 ~~~~~~~~~~~p~~~~v~~~-~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v  370 (440)
                                   +  .... ..+               ..+.|++++..      .......++..|.||+++++++.+
T Consensus       192 -------------~--~~e~~~~~---------------~~g~vyr~d~~------~~~~~~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          192 -------------K--SWEMHLGL---------------AWSFVTYYSPN------DVRVVAEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             -------------H--HHHHHTTC---------------CCEEEEEECTT------CCEEEEEEESSEEEEEECTTSSEE
T ss_pred             -------------c--cchhhccC---------------CccEEEEEECC------eEEEeecCCcccCcceECCCCCEE
Confidence                         0  0000 001               11556665542      123345667789999999999999


Q ss_pred             EEEECCCCeEEEEecCCCC----eEEEEECCCCCeeeEEEecCCCcEEEEe
Q psy14258        371 YYAELTSYVIERRKMFGRG----KEVVIDTGIYNVEGMAVDWMANNLYWTD  417 (440)
Q Consensus       371 y~~d~~~~~I~r~~~~g~~----~~~~~~~~~~~~~glAvD~~~~~lYwtd  417 (440)
                      |++|+..++|++.++++.+    ++++ .. -..|+||++|...|+||.+.
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~-~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVL-SF-DTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-EC-SSEEEEEEECTTTCCEEEEE
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEE-eC-CCCCceEEEeCCCCcEEEEe
Confidence            9999999999999987432    3344 33 36899999996447899964

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.32  E-value=2.3e-10  Score=113.88  Aligned_cols=288  Identities=13%  Similarity=-0.012  Sum_probs=168.0

Q ss_pred             cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecccccccee-eccccccce-eeeec---CCcEEEe--
Q psy14258         78 TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPML-ERSLLDGTE-RFPMV---THKIVYP--  150 (440)
Q Consensus        78 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~p~~-avD~~---~~~lY~~--  150 (440)
                      +..  |.+|++++. ++||+++...++|+++.......+.+.   ..+.+.. ..+...+.| |+++.   ++.||++  
T Consensus        26 l~~--P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~---~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           26 LNK--PHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVF---QVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             CSS--EEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEE---ECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCC--ceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEe---cCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            555  999999986 679999988777887764322222110   0011100 013345669 99987   8899998  


Q ss_pred             c--------------eEEEEecCC-----ceEEEEEc----CCCCCceEEEEcCCCCeEEEEEcCC--------------
Q psy14258        151 E--------------AIYFCTHYM-----EHCMIAID----LNLSKPRGIALDPTSGYMFFTKWGA--------------  193 (440)
Q Consensus       151 ~--------------~I~~~~~dg-----~~~~~~~~----~~~~~P~~iavd~~~g~lywtd~~~--------------  193 (440)
                      .              +|.+..+++     ...++++.    ...+.+.+|+++| .|+||++....              
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~  178 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQA  178 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCT
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccccccccc
Confidence            2              588887654     23445553    2346799999999 68999995421              


Q ss_pred             ----------------CCCcEEEEeCCCCC----------ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc
Q psy14258        194 ----------------TRPMLERSLLDGTE----------RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD  247 (440)
Q Consensus       194 ----------------~~~~I~r~~~dG~~----------~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d  247 (440)
                                      ..++|.|++.||+.          +.+++..++..|.||++|+ +++||.+|.+.+.-..++  
T Consensus       179 ~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~~~~dein--  255 (454)
T 1cru_A          179 QHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGPNSDDEIN--  255 (454)
T ss_dssp             TCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECSSSCEEEE--
T ss_pred             ccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCCCCCeEEE--
Confidence                            03689999999983          3457777889999999997 799999997655322222  


Q ss_pred             CCCcEEEecCCccCceeee--eEecCEEEE--E----------ecCCCeEE----EEe----ccCC--CceEEE------
Q psy14258        248 GTDRKTIRKGFPVQNLYDI--TVFENNLFV--T----------SWRNQSII----RVN----KFNS--DDYETI------  297 (440)
Q Consensus       248 G~~~~~i~~~~~~~~p~gl--~~~~~~ly~--t----------d~~~~~i~----~~~----~~~g--~~~~~~------  297 (440)
                           .+..+.....|..-  .-...+.|+  +          ++....|-    ...    ...+  .....+      
T Consensus       256 -----~i~~G~nYGWP~~~G~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~p~~~~~~~~~~~~~~P~~~~~~~~~~  330 (454)
T 1cru_A          256 -----LIVKGGNYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDT  330 (454)
T ss_dssp             -----ECCTTCBCCTTTCSSSSSCSSCCEECGGGSSCTTCCCCCSTTSSCCTTCCEECGGGCCCSSBCCCSEEECCCCTT
T ss_pred             -----EecCCCCCCCCceecCcccCccccccccccccccccccccCCcccCccccccccccccCCCcCCCceeccccccc
Confidence                 11122222233211  000011121  0          00000000    000    0000  000010      


Q ss_pred             ---------------ecCCCCeEEEEeccC-CCCCCCCCceeEEeecCCccEEEEEEcCCCCCC--ceeeeeecCCCCce
Q psy14258        298 ---------------ANFSRPFAIHIYHRQ-KQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTT--EQAIMPITDLKRPS  359 (440)
Q Consensus       298 ---------------~~~~~p~~~~v~~~~-~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~--~~~~~~~~~~~~p~  359 (440)
                                     ..-..|.++.++... ..|.  .-++-||+++-..++|.++.++..+..  .+....+....+|+
T Consensus       331 ~~~~~~~~G~~~~~~~~~~ap~G~~fy~g~~~~~~--~~~g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~  408 (454)
T 1cru_A          331 YNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAIT--GWENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYR  408 (454)
T ss_dssp             CCSCCGGGTTCGGGGSSCCCBCCCEECCCCTTCCT--TCTTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEE
T ss_pred             ccccccccccccccccCccCcceeEEeCCCCccCc--ccCCcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCce
Confidence                           011247788877544 2221  124678888877789999999865321  12122233456999


Q ss_pred             EEEEEcCCCEEEEEECCCCeEEE
Q psy14258        360 VIDYHEKEEYIYYAELTSYVIER  382 (440)
Q Consensus       360 ~l~~d~~~~~vy~~d~~~~~I~r  382 (440)
                      .|++++++..||+++...+.|++
T Consensus       409 dv~~gpDG~~Lyv~~d~~G~i~~  431 (454)
T 1cru_A          409 DVIASPDGNVLYVLTDTAGNVQK  431 (454)
T ss_dssp             EEEECTTSSCEEEEECSSCCEEC
T ss_pred             eEEECCCCCEEEEEECCCCCCcc
Confidence            99999965459999987888876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.32  E-value=6.8e-09  Score=97.96  Aligned_cols=259  Identities=7%  Similarity=-0.002  Sum_probs=164.2

Q ss_pred             ceEEEEecCCceEEEEEcCCCC--CceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-----ccCceEEE
Q psy14258        151 EAIYFCTHYMEHCMIAIDLNLS--KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-----IVYPYGVT  223 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~~~~--~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-----~~~P~gl~  223 (440)
                      +.|.+.++........+.....  .|.+++++|...+||++....  ..|...++........+...     ...|.+++
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS--ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT--TEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC--CeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence            6788888865444333332211  599999999766899998765  58999998654433223221     12688999


Q ss_pred             EeCCCCEEEEEeC-----------CCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccC
Q psy14258        224 VDFPTKHVYWVDT-----------YLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFN  290 (440)
Q Consensus       224 vD~~~~~ly~~d~-----------~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~  290 (440)
                      +++.+++||+++.           ..+.|..+++.+.........  -..|.++++..+  .||++   ++.|..++..+
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~  163 (337)
T 1pby_B           89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL---GRDLHVMDPEA  163 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE---SSSEEEEETTT
T ss_pred             ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe---CCeEEEEECCC
Confidence            9988889999962           247899998865443322222  245788887643  78888   46788888877


Q ss_pred             CCceEEEecCC--CCeEEEEeccCCCCCCCCCc-eeEEeecCCcc-----------------------EEEEEEcCCCCC
Q psy14258        291 SDDYETIANFS--RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPA-----------------------IIKGLTFKRDGT  344 (440)
Q Consensus       291 g~~~~~~~~~~--~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~-----------------------~I~~i~~~~~~~  344 (440)
                      ++....+....  .|..   +         .|+ .+|+++....+                       .|..+++... .
T Consensus       164 ~~~~~~~~~~~~~~~~~---~---------s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~  230 (337)
T 1pby_B          164 GTLVEDKPIQSWEAETY---A---------QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG-E  230 (337)
T ss_dssp             TEEEEEECSTTTTTTTB---C---------CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC-C
T ss_pred             CcEeeeeeccccCCCce---e---------CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC-C
Confidence            65544333211  2221   1         122 22333222111                       4566666554 1


Q ss_pred             Cceeeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeE
Q psy14258        345 TEQAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTI  423 (440)
Q Consensus       345 ~~~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I  423 (440)
                      ..  .++.. ....|.++++++.++++|++   .+.|+..++........+..+ ..|.++++++.++.||.+ ...+.|
T Consensus       231 ~~--~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~-~~~~~i  303 (337)
T 1pby_B          231 MA--MREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLG-GALGDL  303 (337)
T ss_dssp             EE--EEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEE-SBSSEE
T ss_pred             ce--EeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEE-cCCCcE
Confidence            11  22221 22468899999999999999   489999998764433333433 579999999988889988 457899


Q ss_pred             EEEEeCCCeeeEE
Q psy14258        424 NVAKISDFSIRKV  436 (440)
Q Consensus       424 ~~~~~~g~~~~~~  436 (440)
                      .+.++...+..+.
T Consensus       304 ~v~d~~~~~~~~~  316 (337)
T 1pby_B          304 AAYDAETLEKKGQ  316 (337)
T ss_dssp             EEEETTTCCEEEE
T ss_pred             EEEECcCCcEEEE
Confidence            9999875343433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.32  E-value=1.6e-09  Score=98.78  Aligned_cols=199  Identities=14%  Similarity=0.139  Sum_probs=135.8

Q ss_pred             cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceE
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      ..+.|||+|+.+++||.+....+.|..++.+|.-...+..+ ....+.||++.++ .+++++-..++++.+.........
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD-FVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS-SCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC-CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            46899999999999998777788999999997766666442 2578999999876 766888778888877654433322


Q ss_pred             E---Ee-cC-CCC-----eEEEEeccCCCCCCCCCc-eeEEeecCC-ccEEEEEEcCCCCCCceeeee-------ecCCC
Q psy14258        296 T---IA-NF-SRP-----FAIHIYHRQKQPDALKPS-TFLLYAKGK-PAIIKGLTFKRDGTTEQAIMP-------ITDLK  356 (440)
Q Consensus       296 ~---~~-~~-~~p-----~~~~v~~~~~qp~~~~~~-~~l~~~~~~-~~~I~~i~~~~~~~~~~~~~~-------~~~~~  356 (440)
                      .   .. .+ ..|     .+++..          |+ ..|+++..+ +..|+.++  +.-......+.       ...+.
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d----------~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYS----------RQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEE----------TTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSS
T ss_pred             eeeeeccccccccccCCcceEEEe----------CCCCEEEEEECcCCceEEEEc--ccccCCceeeecchhhccccccC
Confidence            1   11 11 122     455554          22 356666554 44777776  21011111211       01244


Q ss_pred             CceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEEC-C-------CCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        357 RPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT-G-------IYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       357 ~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~-~-------~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      .+.+|+||+..+++|+.+..++.+..++.+|.......-. +       +..|+|||+|. .|+||++.- -|.+.+++.
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE-~n~~y~f~~  251 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSE-PNRFYRFTP  251 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEET-TTEEEEEEC
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEEcC-CceEEEEEe
Confidence            7899999999999999999999999999998644433322 2       35899999997 558999965 468999987


Q ss_pred             CC
Q psy14258        429 SD  430 (440)
Q Consensus       429 ~g  430 (440)
                      .+
T Consensus       252 ~~  253 (255)
T 3qqz_A          252 QS  253 (255)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.31  E-value=4.3e-09  Score=101.64  Aligned_cols=247  Identities=11%  Similarity=0.052  Sum_probs=157.4

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC--CCCCceeEEec-CccCceEEEEeCCCCEEE--EEe-------C-
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL--DGTERFPMVTH-KIVYPYGVTVDFPTKHVY--WVD-------T-  236 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~--dG~~~~~l~~~-~~~~P~gl~vD~~~~~ly--~~d-------~-  236 (440)
                      ....|..++++|...+||.++.+    .|...++  +|.... +... ....|..+++++.+++||  .++       . 
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~----~v~~~~~~~~g~~~~-~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~  112 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK----KWSSFAVKSPTEIVH-EASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT----EEEEEEEEETTEEEE-EEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc----eEEEEEECCCCCEEE-eeEeecCCCCccEEECCCCCEEEEEEecCCcceeccc
Confidence            44689999999977779988875    5665555  453221 2221 113588899997777544  343       1 


Q ss_pred             ----CCCcEEEEEcc--CCCcEEEec--CCccCceeeeeEecC--EEEEEecCCCeEEEEecc-CCCceEE--Ee--c-C
Q psy14258        237 ----YLDFIDRINYD--GTDRKTIRK--GFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKF-NSDDYET--IA--N-F  300 (440)
Q Consensus       237 ----~~~~i~~~~~d--G~~~~~i~~--~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~-~g~~~~~--~~--~-~  300 (440)
                          ..+.+...+++  |.....+..  .....+|.++++..+  .||.++...+.|..++.. +|+...+  +.  . .
T Consensus       113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence                35566666664  443322221  112467999998754  899999888899888876 5654322  22  1 2


Q ss_pred             CCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCC-CCCce--eeee-ecC----CC-------CceEEE-E
Q psy14258        301 SRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRD-GTTEQ--AIMP-ITD----LK-------RPSVID-Y  363 (440)
Q Consensus       301 ~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~-~~~~~--~~~~-~~~----~~-------~p~~l~-~  363 (440)
                      ..|.++.+.          |+ .+|+++....+.|..+.++.. +....  ..+. +..    ..       .|.+++ +
T Consensus       193 ~~p~~~~~s----------pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  262 (365)
T 1jof_A          193 DHPRWVAMH----------PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             CCEEEEEEC----------TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             CCCCEeEEC----------CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE
Confidence            357777654          34 478887765578887777642 11110  0111 111    11       478999 9


Q ss_pred             EcCCCEEEEEECCCC-----eEEEEecCCCC-eEE---EEECCCCCeeeEEEec---CCCcEEEEeCCCCeEEEEEeCCC
Q psy14258        364 HEKEEYIYYAELTSY-----VIERRKMFGRG-KEV---VIDTGIYNVEGMAVDW---MANNLYWTDAGIGTINVAKISDF  431 (440)
Q Consensus       364 d~~~~~vy~~d~~~~-----~I~r~~~~g~~-~~~---~~~~~~~~~~glAvD~---~~~~lYwtd~~~~~I~~~~~~g~  431 (440)
                      ++++++||+++...+     +|...+++.++ .+.   .+...-..|.++|+++   .++.||.++...++|.+++++++
T Consensus       263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            999999999987655     78877775222 222   2232335689999999   69999999988899999999884

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.31  E-value=6.9e-10  Score=101.17  Aligned_cols=195  Identities=10%  Similarity=0.048  Sum_probs=133.9

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFC  156 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~  156 (440)
                      ++.|+++++..++||.+....++|+++++.+.-.+.         +.+ .+...++| |++.. +.+|++    +++.+.
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~---------i~l-~g~~D~EGIa~~~~-g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRT---------IPL-DFVKDLETIEYIGD-NQFVISDERDYAIYVI   96 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEE---------EEC-SSCSSEEEEEECST-TEEEEEETTTTEEEEE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEE---------Eec-CCCCChHHeEEeCC-CEEEEEECCCCcEEEE
Confidence            399999999999999876667889988877432221         112 45678999 99843 334455    577777


Q ss_pred             ecCCceE-E--EEEcCCC-CCc-----eEEEEcCCCCeEEEEEcCCCCCcEEEEe--CCCCCceeEEec-------CccC
Q psy14258        157 THYMEHC-M--IAIDLNL-SKP-----RGIALDPTSGYMFFTKWGATRPMLERSL--LDGTERFPMVTH-------KIVY  218 (440)
Q Consensus       157 ~~dg~~~-~--~~~~~~~-~~P-----~~iavd~~~g~lywtd~~~~~~~I~r~~--~dG~~~~~l~~~-------~~~~  218 (440)
                      .++.... .  ......+ ..|     .|||+||..+.||.+..... ..|++.+  +.+... .+...       .+..
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-~~i~~~~g~~~~~~l-~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-IEVYKVNGLLSSNEL-HISKDKALQRQFTLDD  174 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-EEEEEEESTTCSSCC-EEEECHHHHHTCCSSC
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-ceEEEEcccccCCce-eeecchhhccccccCC
Confidence            6654321 1  1111122 234     99999998889999886652 3788877  122222 23221       3557


Q ss_pred             ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC-------CccCceeeeeEecC-EEEEEecCCCeEEEEeccC
Q psy14258        219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-------FPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFN  290 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~-------~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~  290 (440)
                      +.+|++|+.+++||+.......+..++.+|.-+..+.-.       ..+++|.||+++.+ +||++.-. +.++++.+..
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~~~~  253 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFTPQS  253 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEEC--
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEEecC
Confidence            899999999999999999999999999999844443322       12468999999976 99999754 6888888754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.30  E-value=5.4e-10  Score=111.25  Aligned_cols=149  Identities=11%  Similarity=0.118  Sum_probs=105.7

Q ss_pred             eeccccccce-eeeecCCcEEEe----ceEEEEecC-CceEEEE-EcC------CCCCceEEEEcCC---CCeEEEEEcC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHY-MEHCMIA-IDL------NLSKPRGIALDPT---SGYMFFTKWG  192 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~d-g~~~~~~-~~~------~~~~P~~iavd~~---~g~lywtd~~  192 (440)
                      +.+++..|.+ |+++.++ ||++    ++|.+.+.+ |....+. +..      ...-+.|||++|.   +|+||++...
T Consensus        22 ~a~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           22 ILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             EECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             EECCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence            4567999999 9998765 9999    379998764 5543322 122      2344669999997   8999999853


Q ss_pred             C------C----CCcEEEEeCCCC-----CceeEEe----cCccCceEEEEeCCCCEEEEEeCC----------------
Q psy14258        193 A------T----RPMLERSLLDGT-----ERFPMVT----HKIVYPYGVTVDFPTKHVYWVDTY----------------  237 (440)
Q Consensus       193 ~------~----~~~I~r~~~dG~-----~~~~l~~----~~~~~P~gl~vD~~~~~ly~~d~~----------------  237 (440)
                      .      .    ..+|.|..+++.     ..++++.    .....+.+|++++ .++||++...                
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~  179 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQ  179 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTT
T ss_pred             cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccc
Confidence            0      0    148999988653     2344443    1245699999995 5689998431                


Q ss_pred             ----------------CCcEEEEEccCC-----------CcEEEecCCccCceeeeeEec-CEEEEEecCCC
Q psy14258        238 ----------------LDFIDRINYDGT-----------DRKTIRKGFPVQNLYDITVFE-NNLFVTSWRNQ  281 (440)
Q Consensus       238 ----------------~~~i~~~~~dG~-----------~~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~  281 (440)
                                      .++|.+++.||+           ..++...+  +++|+|++++. +.||.++...+
T Consensus       180 ~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G--~RNp~gla~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          180 HTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG--HRNPQGLAFTPNGKLLQSEQGPN  249 (454)
T ss_dssp             CCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC--CSEEEEEEECTTSCEEEEEECSS
T ss_pred             cccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEEC--CCCcceEEECCCCCEEEEecCCC
Confidence                            368999999997           34555555  89999999985 58999996543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.29  E-value=2e-09  Score=100.84  Aligned_cols=233  Identities=14%  Similarity=0.094  Sum_probs=159.1

Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-------ccCceEEEE---eCCCCEEEE-EeC
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-------IVYPYGVTV---DFPTKHVYW-VDT  236 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-------~~~P~gl~v---D~~~~~ly~-~d~  236 (440)
                      ....-.|++++.|+.+|.+|+++...  ++|.+.++++...+.+....       ...|.||.+   |+. ++|++ ++.
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~--g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~   85 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYK--GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKN   85 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTT--TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEE
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccC--CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcc
Confidence            34556899999999999999999876  69999999866555442222       236899999   766 88988 552


Q ss_pred             ------------CCCcEEEEEcc----CCCcEEEecC-----------CccCceeeeeEecC-EEEEEecCC-CeEEEEe
Q psy14258        237 ------------YLDFIDRINYD----GTDRKTIRKG-----------FPVQNLYDITVFEN-NLFVTSWRN-QSIIRVN  287 (440)
Q Consensus       237 ------------~~~~i~~~~~d----G~~~~~i~~~-----------~~~~~p~gl~~~~~-~ly~td~~~-~~i~~~~  287 (440)
                                  +...+.+++++    |.....+...           .....|.+|+++.+ ++|+++... +.|++++
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence                        35679999988    5544444311           01235889999976 999999988 9999999


Q ss_pred             ccCCCceEEEe-cCC------CCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeec------
Q psy14258        288 KFNSDDYETIA-NFS------RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT------  353 (440)
Q Consensus       288 ~~~g~~~~~~~-~~~------~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~------  353 (440)
                      +. |+....+. ...      .+.||++.          |+ ..|+++++ .+++.+++++.. ..  ..+++.      
T Consensus       166 pd-G~~~~~~~~~~~~~~~~~G~nGIv~~----------pdg~~Liv~~~-~g~L~~fD~~~p-v~--~~v~~~~~G~~~  230 (334)
T 2p9w_A          166 AD-GKTVSTFAWESGNGGQRPGYSGITFD----------PHSNKLIAFGG-PRALTAFDVSKP-YA--WPEPVKINGDFG  230 (334)
T ss_dssp             TT-SCCEEEEEECCCCSSSCCSCSEEEEE----------TTTTEEEEESS-SSSEEEEECSSS-SC--CCEECEESSCCC
T ss_pred             CC-CCEEeeeeecCCCcccccCcceEEEe----------CCCCEEEEEcC-CCeEEEEcCCCC-cc--eeecccccCCcc
Confidence            95 54444322 111      25577655          45 45777777 799999998843 11  124443      


Q ss_pred             CCCCceEE-EEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE---CCCCCeeeEEEe-----cCCCcEEEEeCC
Q psy14258        354 DLKRPSVI-DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID---TGIYNVEGMAVD-----WMANNLYWTDAG  419 (440)
Q Consensus       354 ~~~~p~~l-~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~---~~~~~~~glAvD-----~~~~~lYwtd~~  419 (440)
                      .+..|.+| +....+.-+++++...+.+...+.||=....+..   ..+. +.|++++     -.+++||..+..
T Consensus       231 ~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~sa~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~~  304 (334)
T 2p9w_A          231 TLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSANIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSAF  304 (334)
T ss_dssp             CCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTSEEEEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEECC
T ss_pred             cccCcccccccccCCEEEEEEcCCCCEEEEECCCCcceeEEeeeecCccc-cCceeEEEEeccccCCeEEEEeee
Confidence            35567885 6666666669999888888888888832222222   1223 7899988     457899999854

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.29  E-value=3.6e-09  Score=95.97  Aligned_cols=192  Identities=15%  Similarity=0.134  Sum_probs=133.8

Q ss_pred             ceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCC-cEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceE
Q psy14258        219 PYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTD-RKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      -.||+++  +++||.+....  +.|..+++.... ...+..+. -....|+++.++.||.+.|..+.++.+|..+.+...
T Consensus        45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            3799998  57999998654  489999986443 33333221 223467899999999999999999999998888776


Q ss_pred             EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC----CCCceEEEEEcCCCEEE
Q psy14258        296 TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD----LKRPSVIDYHEKEEYIY  371 (440)
Q Consensus       296 ~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~----~~~p~~l~~d~~~~~vy  371 (440)
                      .+.-...+.++.-.           ...|+++++ .++|..++...- . ....+++..    +..+..+++.  +++||
T Consensus       122 ti~~~~eG~glt~d-----------g~~L~~SdG-s~~i~~iDp~T~-~-v~~~I~V~~~g~~~~~lNELe~~--~G~ly  185 (262)
T 3nol_A          122 SFNYDGEGWGLTHN-----------DQYLIMSDG-TPVLRFLDPESL-T-PVRTITVTAHGEELPELNELEWV--DGEIF  185 (262)
T ss_dssp             EEECSSCCCCEEEC-----------SSCEEECCS-SSEEEEECTTTC-S-EEEEEECEETTEECCCEEEEEEE--TTEEE
T ss_pred             EEECCCCceEEecC-----------CCEEEEECC-CCeEEEEcCCCC-e-EEEEEEeccCCccccccceeEEE--CCEEE
Confidence            55533345555432           356888886 478888887654 1 112233321    2234456665  78999


Q ss_pred             EEECCCCeEEEEecCCCCeEEEEEC-CC-----------CCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        372 YAELTSYVIERRKMFGRGKEVVIDT-GI-----------YNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       372 ~~d~~~~~I~r~~~~g~~~~~~~~~-~~-----------~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      .+...++.|.++++........+.. ++           +.|.|||+|+.+++||+|.-.=..+..+++.
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            9998999999999975544444442 22           4689999999999999998665666666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.27  E-value=1.3e-08  Score=91.60  Aligned_cols=196  Identities=13%  Similarity=0.108  Sum_probs=136.9

Q ss_pred             ccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCc-EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDR-KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~  292 (440)
                      -..-.||++|  +++||.+....  +.|..+++....+ ..+.-.. -....|+++.+++||...|.++.++.++..+.+
T Consensus        20 ~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence            3456799998  48999997653  5999999865443 3332221 234578899999999999999999999998887


Q ss_pred             ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC----CCCceEEEEEcCCC
Q psy14258        293 DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD----LKRPSVIDYHEKEE  368 (440)
Q Consensus       293 ~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~----~~~p~~l~~d~~~~  368 (440)
                      ....+.....+.++.-.           ...|+++++ .+.|..++...- .. ...+++..    +..+..+++  .++
T Consensus        97 ~~~ti~~~~~Gwglt~d-----------g~~L~vSdg-s~~l~~iDp~t~-~~-~~~I~V~~~g~~~~~lNeLe~--~~G  160 (243)
T 3mbr_X           97 PRARFRYPGEGWALTSD-----------DSHLYMSDG-TAVIRKLDPDTL-QQ-VGSIKVTAGGRPLDNLNELEW--VNG  160 (243)
T ss_dssp             EEEEEECSSCCCEEEEC-----------SSCEEEECS-SSEEEEECTTTC-CE-EEEEECEETTEECCCEEEEEE--ETT
T ss_pred             EEEEEeCCCCceEEeeC-----------CCEEEEECC-CCeEEEEeCCCC-eE-EEEEEEccCCcccccceeeEE--eCC
Confidence            77665543456666532           356899986 578888887654 11 12233321    123445554  488


Q ss_pred             EEEEEECCCCeEEEEecCCCCeEEEEE-C------------CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        369 YIYYAELTSYVIERRKMFGRGKEVVID-T------------GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       369 ~vy~~d~~~~~I~r~~~~g~~~~~~~~-~------------~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +||.+...++.|.++++........+. .            ..+-++|||+|+.+++||+|.-.=..+..+++..
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~  235 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP  235 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence            999888889999999997544433333 1            1246899999999999999986666777777654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.27  E-value=3.4e-09  Score=96.13  Aligned_cols=190  Identities=10%  Similarity=0.063  Sum_probs=135.6

Q ss_pred             ceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        219 PYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      -.||+++  +++||.+....+.|..+++. |.-...++..  -....|+++.++.||.+.|..+.++.++..+.+....+
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~--~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLG--NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECT--TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCC--CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            3699997  68999999998899999985 4445555222  22446699999999999999999999999888777665


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC----CCCceEEEEEcCCCEEEEE
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD----LKRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~----~~~p~~l~~d~~~~~vy~~  373 (440)
                      .-...+.++.-.           ...|+++++ .++|..++...- .. ...+++..    +..+..+++.  +++||.+
T Consensus       133 ~~~~eGwGLt~D-----------g~~L~vSdG-s~~l~~iDp~T~-~v-~~~I~V~~~g~~v~~lNeLe~~--dG~lyan  196 (268)
T 3nok_A          133 RYSGEGWGLCYW-----------NGKLVRSDG-GTMLTFHEPDGF-AL-VGAVQVKLRGQPVELINELECA--NGVIYAN  196 (268)
T ss_dssp             ECSSCCCCEEEE-----------TTEEEEECS-SSEEEEECTTTC-CE-EEEEECEETTEECCCEEEEEEE--TTEEEEE
T ss_pred             eCCCceeEEecC-----------CCEEEEECC-CCEEEEEcCCCC-eE-EEEEEeCCCCcccccccccEEe--CCEEEEE
Confidence            543345666533           357899985 588988887654 11 11233321    2234556655  7899999


Q ss_pred             ECCCCeEEEEecCCCCeEEEEECC-------------CCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        374 ELTSYVIERRKMFGRGKEVVIDTG-------------IYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       374 d~~~~~I~r~~~~g~~~~~~~~~~-------------~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      ...++.|.++++........+...             .+-+.|||+|+.+++||+|.-.=..+..+++
T Consensus       197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            888999999999754443333321             2478999999999999999765556666555

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.26  E-value=2e-08  Score=95.29  Aligned_cols=270  Identities=11%  Similarity=0.037  Sum_probs=161.8

Q ss_pred             eeeecCCcEEEe----ceEEEEecCCceEEEEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe
Q psy14258        139 RFPMVTHKIVYP----EAIYFCTHYMEHCMIAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT  213 (440)
Q Consensus       139 avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~  213 (440)
                      |+. .++.+|++    +.|.+.+++.......+. .....|.+++++|...++|.+....  +.|...+++.......+.
T Consensus         6 ~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            6 ALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY--GDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEE
T ss_pred             ccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC--CcEEEEeCCCCcEEEEEE
Confidence            454 34557777    789999987654433333 2223699999999766799998654  589999987544332332


Q ss_pred             cC------ccCceEEEEeCCCCEEEEEeCC-----------CCcEEEEEccCCC----cEEEecCCccCceeeeeEecC-
Q psy14258        214 HK------IVYPYGVTVDFPTKHVYWVDTY-----------LDFIDRINYDGTD----RKTIRKGFPVQNLYDITVFEN-  271 (440)
Q Consensus       214 ~~------~~~P~gl~vD~~~~~ly~~d~~-----------~~~i~~~~~dG~~----~~~i~~~~~~~~p~gl~~~~~-  271 (440)
                      ..      ...|.++++++.+++||++...           .+.|..+++....    ......   -..+.++++..+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg  159 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAADDG  159 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEECTTS
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC---CCcccceeECCCC
Confidence            21      2348999999999999998844           4789999876422    122211   224667777644 


Q ss_pred             EEEEEecCCCeEEEEeccCCCceEEEecCC--C-----------------------CeEEEEeccCCC-CCCCCCceeEE
Q psy14258        272 NLFVTSWRNQSIIRVNKFNSDDYETIANFS--R-----------------------PFAIHIYHRQKQ-PDALKPSTFLL  325 (440)
Q Consensus       272 ~ly~td~~~~~i~~~~~~~g~~~~~~~~~~--~-----------------------p~~~~v~~~~~q-p~~~~~~~~l~  325 (440)
                      .+|.++   +.|..++..+++....+....  .                       |.++.+...... |.. ....+.+
T Consensus       160 ~l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~  235 (349)
T 1jmx_B          160 SLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT-ADLLYGY  235 (349)
T ss_dssp             CEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC-CEEEEEE
T ss_pred             cEEEcc---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc-cccceeE
Confidence            577753   348888887776555443111  1                       111111100000 000 0001111


Q ss_pred             e-ecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc-CCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeee
Q psy14258        326 Y-AKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE-KEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG  403 (440)
Q Consensus       326 ~-~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~-~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~g  403 (440)
                      + .+...+.+..+.++.            .-..|.++++++ .++.+|++   .+.|+..++........+..+ ..|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~-~~~~~  299 (349)
T 1jmx_B          236 LSVDLKTGKTHTQEFAD------------LTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLD-HTYYC  299 (349)
T ss_dssp             EEEETTTCCEEEEEEEE------------CSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECS-SCCCE
T ss_pred             EEEeccCCcEEeccccc------------CCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcCC-CCccc
Confidence            1 122222333222211            123678999999 89999988   679999998764433333433 56899


Q ss_pred             EEEecCCCcEEEEeCCCCeEEEEEeCCCeeeE
Q psy14258        404 MAVDWMANNLYWTDAGIGTINVAKISDFSIRK  435 (440)
Q Consensus       404 lAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~  435 (440)
                      +++++.++.||.+. ..+.|.+.+++..+..+
T Consensus       300 ~~~s~dg~~l~~~~-~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          300 VAFDKKGDKLYLGG-TFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EEECSSSSCEEEES-BSSEEEEEETTTTEEEE
T ss_pred             eEECCCCCEEEEec-CCCeEEEEeccccceee
Confidence            99999888999864 45899999997534333

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.24  E-value=1.8e-07  Score=95.71  Aligned_cols=334  Identities=7%  Similarity=-0.034  Sum_probs=205.4

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccc
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT  125 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~  125 (440)
                      ...+++++...   ++|..+++......-.++... .+.++.+++.++++|.++. .+.|..+++.....+.+      .
T Consensus       166 ~~~~~V~~~~~---~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v------~  234 (567)
T 1qks_A          166 ENLFSVTLRDA---GQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTV------A  234 (567)
T ss_dssp             GGEEEEEETTT---TEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEE------E
T ss_pred             CceEEEEeCCC---CeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEe------E
Confidence            33566666543   449999988665553444433 2889999999999999875 46777777631111111      1


Q ss_pred             cceeeccccccce-eee----ecCCcEEEe----ceEEEEecCCceEEEEEcC-C----------CCCceEEEEcCCCCe
Q psy14258        126 RPMLERSLLDGTE-RFP----MVTHKIVYP----EAIYFCTHYMEHCMIAIDL-N----------LSKPRGIALDPTSGY  185 (440)
Q Consensus       126 ~v~~~~~~~~p~~-avD----~~~~~lY~~----~~I~~~~~dg~~~~~~~~~-~----------~~~P~~iavd~~~g~  185 (440)
                      .  +. ....|++ +++    +.++.+|++    +.|.+++.........+.. .          ...+.+|+..+.+..
T Consensus       235 ~--i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~  311 (567)
T 1qks_A          235 E--IK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  311 (567)
T ss_dssp             E--EE-CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             E--Ee-cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence            1  22 2346999 999    588899998    7888888665433322221 1          114567887775555


Q ss_pred             EEEEEcCCCCCcEEEEeCCCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEecCCccCce
Q psy14258        186 MFFTKWGATRPMLERSLLDGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGFPVQNL  263 (440)
Q Consensus       186 lywtd~~~~~~~I~r~~~dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~~~~~p  263 (440)
                      .+++....  ++|...+........+.. ..-.+|.++.+|+.+.++|.++...++|..+|.....+ ..+..+....||
T Consensus       312 ~vv~~~~~--g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php  389 (567)
T 1qks_A          312 FIVNVKET--GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP  389 (567)
T ss_dssp             EEEEETTT--TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred             EEEEecCC--CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence            55555433  689999886543222221 12346889999999999999999999999999864433 333331225666


Q ss_pred             -eeeeE-ec--CEEEEEe-cCCCeEEEEeccCCC-------ceEEEecCC-CCeEEEEeccCCCCCCCCCc-eeEEeecC
Q psy14258        264 -YDITV-FE--NNLFVTS-WRNQSIIRVNKFNSD-------DYETIANFS-RPFAIHIYHRQKQPDALKPS-TFLLYAKG  329 (440)
Q Consensus       264 -~gl~~-~~--~~ly~td-~~~~~i~~~~~~~g~-------~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~~~~~  329 (440)
                       .|+.+ +.  +.+|.+. ...+.|..++..+++       ....+.... .+..++. |         |+ .+|+++..
T Consensus       390 g~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~-~---------p~~~~l~v~~~  459 (567)
T 1qks_A          390 GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT-H---------PNSQYLYVDAT  459 (567)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC-C---------TTCSEEEEECT
T ss_pred             ccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe-C---------CCCCeEEEecC
Confidence             47664 32  4677665 456888888876532       233333222 2233332 2         34 57777663


Q ss_pred             -C-----ccEEEEEEcCCCC---CCce-eeeeec-------CCCCceEEEEEcCCCEEEEEEC----CCCeEEEEecCCC
Q psy14258        330 -K-----PAIIKGLTFKRDG---TTEQ-AIMPIT-------DLKRPSVIDYHEKEEYIYYAEL----TSYVIERRKMFGR  388 (440)
Q Consensus       330 -~-----~~~I~~i~~~~~~---~~~~-~~~~~~-------~~~~p~~l~~d~~~~~vy~~d~----~~~~I~r~~~~g~  388 (440)
                       +     ...|..++++...   .... ..+++.       +..+|..++|++.+..||++..    ..+.|..++....
T Consensus       460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence             2     2478888876440   0111 234432       2357889999999999999965    3789999887653


Q ss_pred             CeEEEEE-CCCCCeeeEE
Q psy14258        389 GKEVVID-TGIYNVEGMA  405 (440)
Q Consensus       389 ~~~~~~~-~~~~~~~glA  405 (440)
                      .....+. ..+..|.|.-
T Consensus       540 ~~~~~i~~~~~~~P~g~f  557 (567)
T 1qks_A          540 ELKHVIKDERLVTPTGKF  557 (567)
T ss_dssp             EEEEEECCTTCCSEEEEE
T ss_pred             eEEEEeCCCcccCCCeee
Confidence            3333332 3477888753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.21  E-value=1.6e-08  Score=97.71  Aligned_cols=247  Identities=10%  Similarity=-0.007  Sum_probs=152.0

Q ss_pred             cccccce-eeeecCCcEEEe--ceEEEEecC--CceEEEEEcCCCCCceEEEEcCCCCeEE--EEE------cC-----C
Q psy14258        132 SLLDGTE-RFPMVTHKIVYP--EAIYFCTHY--MEHCMIAIDLNLSKPRGIALDPTSGYMF--FTK------WG-----A  193 (440)
Q Consensus       132 ~~~~p~~-avD~~~~~lY~~--~~I~~~~~d--g~~~~~~~~~~~~~P~~iavd~~~g~ly--wtd------~~-----~  193 (440)
                      ....|.. |+++.++.||.+  +.|.+.+++  |+.....-......|.+++++|...+||  .++      .+     .
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3457899 999999889988  577777764  5433222111113588999999655433  343      11     1


Q ss_pred             CCCcEEEEeCC--CCCceeEEe---cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEec-C-C-ccCcee
Q psy14258        194 TRPMLERSLLD--GTERFPMVT---HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRK-G-F-PVQNLY  264 (440)
Q Consensus       194 ~~~~I~r~~~d--G~~~~~l~~---~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~-~-~-~~~~p~  264 (440)
                      . +.+...+++  |.....+..   .....|.++++++.+++||.++...+.|...+++ ......+.. . . ....|.
T Consensus       118 ~-g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          118 A-GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             C-CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             C-ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            2 456666654  543322221   1345799999999999999999888899999987 333332221 1 0 134699


Q ss_pred             eeeEecC--EEEEEecCCCeEEEEe--ccCCCce---EEEecCC--------------CCeEEEEeccCCCCCCCCCc-e
Q psy14258        265 DITVFEN--NLFVTSWRNQSIIRVN--KFNSDDY---ETIANFS--------------RPFAIHIYHRQKQPDALKPS-T  322 (440)
Q Consensus       265 gl~~~~~--~ly~td~~~~~i~~~~--~~~g~~~---~~~~~~~--------------~p~~~~v~~~~~qp~~~~~~-~  322 (440)
                      ++++..+  .||.++...+.|..++  ..+|+..   ..+..+.              .|.++.++.         |+ .
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s---------pdG~  267 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT---------FSGK  267 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC---------TTSS
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC---------CCCC
Confidence            9998754  8999987777766554  3345432   1222221              245565232         34 4


Q ss_pred             eEEeecCCcc-----EEEEEEcCCCCCCceeeeeec-CCCCceEEEEEc---CCCEEEEEECCCCeEEEEecCCC
Q psy14258        323 FLLYAKGKPA-----IIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHE---KEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       323 ~l~~~~~~~~-----~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~---~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                      +|++++...+     .|..++++..+........+. ....|.+++++|   .+++||+++...++|...++++.
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            7887765433     788888763312111110122 234688999999   79999999887888888888765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.19  E-value=3.2e-08  Score=93.30  Aligned_cols=256  Identities=7%  Similarity=-0.080  Sum_probs=157.6

Q ss_pred             ccce-eeeecCCcEEEe----ceEEEEecCCceEE-EEEcCCC----CCceEEEEcCCCCeEEEEEcC----------CC
Q psy14258        135 DGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCM-IAIDLNL----SKPRGIALDPTSGYMFFTKWG----------AT  194 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~-~~~~~~~----~~P~~iavd~~~g~lywtd~~----------~~  194 (440)
                      .|.+ ++++.++.+|++    +.|.+.++...... .+-....    ..|.+++++|...+||+++.+          ..
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            4888 999999889988    58999998754433 3322211    279999999977799999621          12


Q ss_pred             CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEE
Q psy14258        195 RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLF  274 (440)
Q Consensus       195 ~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly  274 (440)
                       ..|...++++......+.. -..|.++++++.+.+||++   .+.|..+++................|..++-++..||
T Consensus       115 -~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  189 (337)
T 1pby_B          115 -TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             -CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             -ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence             5899999876543333332 3468899999888889999   3679999887554433332111123444444444555


Q ss_pred             EEecCCC-----------------------eEEEEeccCCCceEE-Eec-CCCCeEEEEeccCCCCCCCCCc-eeEEeec
Q psy14258        275 VTSWRNQ-----------------------SIIRVNKFNSDDYET-IAN-FSRPFAIHIYHRQKQPDALKPS-TFLLYAK  328 (440)
Q Consensus       275 ~td~~~~-----------------------~i~~~~~~~g~~~~~-~~~-~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~  328 (440)
                      ++....+                       .|..++..+++.... +.. ...|.++.+.          |+ .+|+++ 
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s----------~dg~~l~~~-  258 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN----------PAKTRAFGA-  258 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC----------TTSSEEEEE-
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEEC----------CCCCEEEEe-
Confidence            5543333                       356666665554321 111 1245555544          33 467776 


Q ss_pred             CCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEec
Q psy14258        329 GKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDW  408 (440)
Q Consensus       329 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~  408 (440)
                        .+.|..++++..    .....+.....|.++++++.++++|++ ...+.|...++........+..+ ..|. +.+  
T Consensus       259 --~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~i~v~d~~~~~~~~~~~~~-~~~~-~~~--  327 (337)
T 1pby_B          259 --YNVLESFDLEKN----ASIKRVPLPHSYYSVNVSTDGSTVWLG-GALGDLAAYDAETLEKKGQVDLP-GNAS-MSL--  327 (337)
T ss_dssp             --ESEEEEEETTTT----EEEEEEECSSCCCEEEECTTSCEEEEE-SBSSEEEEEETTTCCEEEEEECG-GGCC-CBT--
T ss_pred             --CCeEEEEECCCC----cCcceecCCCceeeEEECCCCCEEEEE-cCCCcEEEEECcCCcEEEEEEcC-CCCc-eeE--
Confidence              278988888654    222222333578899999999999988 45789999998764433333322 2233 222  


Q ss_pred             CCCcEEEEe
Q psy14258        409 MANNLYWTD  417 (440)
Q Consensus       409 ~~~~lYwtd  417 (440)
                      .+..+|+.+
T Consensus       328 ~~~~~~~~~  336 (337)
T 1pby_B          328 ASVRLFTRD  336 (337)
T ss_dssp             CCCEEEECC
T ss_pred             eeeEEEecC
Confidence            245677643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.18  E-value=2.3e-09  Score=103.55  Aligned_cols=270  Identities=5%  Similarity=-0.133  Sum_probs=164.6

Q ss_pred             cCCcEEEe----c----eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcC-------CCCCcEEEEeCCCCC
Q psy14258        143 VTHKIVYP----E----AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG-------ATRPMLERSLLDGTE  207 (440)
Q Consensus       143 ~~~~lY~~----~----~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~-------~~~~~I~r~~~dG~~  207 (440)
                      ....+|++    +    +|.+.|.+.....--+..+ ..| +++++|..++||.++..       .....|...++....
T Consensus        30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCC-CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            34569998    3    7888888765543333323 358 99999999999999842       101478888886433


Q ss_pred             ceeEEecC-------ccCceEEEEeCCCCEEEEEeCC-CCcEEE--EEccCCCcEEEecCCccCceeeeeEecCEEEEEe
Q psy14258        208 RFPMVTHK-------IVYPYGVTVDFPTKHVYWVDTY-LDFIDR--INYDGTDRKTIRKGFPVQNLYDITVFENNLFVTS  277 (440)
Q Consensus       208 ~~~l~~~~-------~~~P~gl~vD~~~~~ly~~d~~-~~~i~~--~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td  277 (440)
                      ...-+..+       ...|.++++++.+++||+++.. .+.+..  +|...  ...+..+    ....+.-.++..|.+.
T Consensus       108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~----~~~~~~p~g~~~~~~~  181 (368)
T 1mda_H          108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSA----SCFHIHPGAAATHYLG  181 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECS----SCCCCEEEETTEEECC
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECC----CceEEccCCCeEEEEE
Confidence            22222111       2469999999999999999875 456666  55543  4444322    1223344556788888


Q ss_pred             cCCCeEEEEeccC-----CCceEE----EecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCcee
Q psy14258        278 WRNQSIIRVNKFN-----SDDYET----IANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQA  348 (440)
Q Consensus       278 ~~~~~i~~~~~~~-----g~~~~~----~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~  348 (440)
                      ..++++..++..+     ++....    +.-...|.  . .         ...+.++++..  +.+..+++.+. .. ..
T Consensus       182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~---------~~~~~~~~vs~--~~V~viD~~~~-~~-~v  245 (368)
T 1mda_H          182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-A---------NYPGMLVWAVA--SSILQGDIPAA-GA-TM  245 (368)
T ss_dssp             CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-E---------TTTTEEEECBS--SCCEEEECCSS-CC-EE
T ss_pred             cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-c---------ccCCEEEEEcC--CEEEEEECCCC-cc-eE
Confidence            7788877777654     221100    00011232  1 1         12244555544  78888887653 11 11


Q ss_pred             e--eee------cCCCCceE---EEEEcCCCEEEEEEC---C-----CCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258        349 I--MPI------TDLKRPSV---IDYHEKEEYIYYAEL---T-----SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       349 ~--~~~------~~~~~p~~---l~~d~~~~~vy~~d~---~-----~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~  409 (440)
                      .  +++      .....|.+   +++++.++++|++..   +     .+.+..+++.......-+..+ ..|.||++.+.
T Consensus       246 ~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~D  324 (368)
T 1mda_H          246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQD  324 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCS
T ss_pred             EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCC
Confidence            1  111      11123555   889999999999865   3     345557777653322212222 36999999998


Q ss_pred             CCcEEEEeC-CCCeEEEEEeCCCeeeEEe
Q psy14258        410 ANNLYWTDA-GIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       410 ~~~lYwtd~-~~~~I~~~~~~g~~~~~~l  437 (440)
                      ++.||+++. ..+.|.++++...+..+.|
T Consensus       325 g~~l~va~~~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          325 GASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             CCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence            989999998 6999999999864444443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.16  E-value=8.2e-08  Score=92.68  Aligned_cols=271  Identities=10%  Similarity=0.018  Sum_probs=154.1

Q ss_pred             CCcEEEe---------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcC-------CCCCcEEEEeCCCCC
Q psy14258        144 THKIVYP---------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG-------ATRPMLERSLLDGTE  207 (440)
Q Consensus       144 ~~~lY~~---------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~-------~~~~~I~r~~~dG~~  207 (440)
                      .+.+|++         +.|.+.+.+.......+..+ ..| +|+++|..++||.++..       .....|...+.+...
T Consensus        15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g-~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA-FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC-EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC-CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            3457776         37888886543332222323 468 99999988899999841       101358888875322


Q ss_pred             c-eeEEec-----CccCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCCcEEE-ecCCccCceeeeeEec--CEEEEEe
Q psy14258        208 R-FPMVTH-----KIVYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTDRKTI-RKGFPVQNLYDITVFE--NNLFVTS  277 (440)
Q Consensus       208 ~-~~l~~~-----~~~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~~~~i-~~~~~~~~p~gl~~~~--~~ly~td  277 (440)
                      . ..+-..     ....|.++++++.+++||.++.. .+.|..++.+....... ..   .....++.++.  ...|++.
T Consensus        93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~---~~~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA---AAGCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG---GTTEEEEEECTTSSSEEEEE
T ss_pred             EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec---CCCcceeEEcCCCCeeEEEE
Confidence            2 222111     12479999999999999999875 67899998864422211 11   22222333332  2445554


Q ss_pred             cCCCeEEEEeccC-CCceEEEecCCCCeEEEEeccCCCCCCC----CCceeEEeecCCccEEEEEEcCCCCCCceeeeee
Q psy14258        278 WRNQSIIRVNKFN-SDDYETIANFSRPFAIHIYHRQKQPDAL----KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI  352 (440)
Q Consensus       278 ~~~~~i~~~~~~~-g~~~~~~~~~~~p~~~~v~~~~~qp~~~----~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~  352 (440)
                      ...+++..+.... ++.......      ..+++....|...    ..+..++++..  +.|..+++......-....++
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~v~v~d~~~~~~~~~~~~~~  241 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRS------KQMFSVKDDPIFIAPALDKDKAHFVSYY--GNVYSADFSGDEVKVDGPWSL  241 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEEC------CCCSCTTTSCBCSCCEECSSEEEEEBTT--SEEEEEECSSSSCEEEEEEES
T ss_pred             CCCCcEEEEEECCCCcEeeeccc------cceEcCCCCceEEEecccCCEEEEEeCC--CeEEEEEecCCCceecccccc
Confidence            4555555444322 322211110      0112211112111    11234444433  678888876541110000111


Q ss_pred             ------cCCCCceE---EEEEcCCCEEEEEEC----------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcE
Q psy14258        353 ------TDLKRPSV---IDYHEKEEYIYYAEL----------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNL  413 (440)
Q Consensus       353 ------~~~~~p~~---l~~d~~~~~vy~~d~----------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~l  413 (440)
                            .....|.+   +++++.++++|++..          ..++|+.+++.......-+..+ . |.+||+++.++.|
T Consensus       242 ~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~-p~~ia~spdg~~l  319 (361)
T 2oiz_A          242 LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D-ALSMTIDQQRNLM  319 (361)
T ss_dssp             CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T-CCEEEEETTTTEE
T ss_pred             cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C-eeEEEECCCCCEE
Confidence                  00112343   899999999999864          2458999998764333333444 3 9999999999999


Q ss_pred             EEEeCCCCeEEEEEeCCC
Q psy14258        414 YWTDAGIGTINVAKISDF  431 (440)
Q Consensus       414 Ywtd~~~~~I~~~~~~g~  431 (440)
                      |.++.  ++|.++++...
T Consensus       320 ~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          320 LTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             EEECS--SCEEEEECSSS
T ss_pred             EEeCC--CeEEEEECCCC
Confidence            99985  89999998763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.14  E-value=4.7e-08  Score=88.65  Aligned_cols=198  Identities=10%  Similarity=0.038  Sum_probs=131.6

Q ss_pred             ce-eeeecCCcEEEe------ceEEEEecCCce-EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        137 TE-RFPMVTHKIVYP------EAIYFCTHYMEH-CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       137 ~~-avD~~~~~lY~~------~~I~~~~~dg~~-~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      .| +++  ++.||.+      .+|.+.+++... ...+-...-....||+++  .+.||.++|..  ..+.+.+.+--..
T Consensus        46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~--~~v~v~D~~t~~~  119 (262)
T 3nol_A           46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKN--GLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSS--SEEEEEETTTCCE
T ss_pred             ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeC--CEEEEEECccCcE
Confidence            67 777  5789999      279999987544 333322222234677876  48999999987  5999999864332


Q ss_pred             eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC-CCcEEEec---CCccCceeeeeEecCEEEEEecCCCeEE
Q psy14258        209 FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG-TDRKTIRK---GFPVQNLYDITVFENNLFVTSWRNQSII  284 (440)
Q Consensus       209 ~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG-~~~~~i~~---~~~~~~p~gl~~~~~~ly~td~~~~~i~  284 (440)
                      ..-+.-. ..+.||+-|  +++||.+|. .++|..+|... .....+..   +..+..+..+...++.||...|.++.|.
T Consensus       120 ~~ti~~~-~eG~glt~d--g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~  195 (262)
T 3nol_A          120 VRSFNYD-GEGWGLTHN--DQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIV  195 (262)
T ss_dssp             EEEEECS-SCCCCEEEC--SSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred             EEEEECC-CCceEEecC--CCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEE
Confidence            2222221 245677765  789999984 78999998764 33334332   2234556678888889999999999999


Q ss_pred             EEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEE
Q psy14258        285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYH  364 (440)
Q Consensus       285 ~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d  364 (440)
                      ++|..+|+....+.                                        +.+- ... .........-|.|||||
T Consensus       196 vIDp~tG~V~~~Id----------------------------------------~~~L-~~~-~~~~~~~~~vlNGIA~d  233 (262)
T 3nol_A          196 RIDPETGKVTGIID----------------------------------------LNGI-LAE-AGPLPSPIDVLNGIAWD  233 (262)
T ss_dssp             EECTTTCBEEEEEE----------------------------------------CTTG-GGG-SCSCCSSCCCEEEEEEE
T ss_pred             EEECCCCcEEEEEE----------------------------------------CCcC-ccc-cccccCcCCceEEEEEc
Confidence            99998886554332                                        1111 000 00000122358999999


Q ss_pred             cCCCEEEEEECCCCeEEEEecC
Q psy14258        365 EKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       365 ~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      +.++++|++...=..+|++.+.
T Consensus       234 p~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          234 KEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             TTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCCCEEEEECCCCCceEEEEEe
Confidence            9999999998877788888764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.14  E-value=1.1e-08  Score=95.78  Aligned_cols=205  Identities=11%  Similarity=-0.037  Sum_probs=144.0

Q ss_pred             cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-C-----CccCceeeeeE---ec-CEEEE-Eec----
Q psy14258        214 HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-G-----FPVQNLYDITV---FE-NNLFV-TSW----  278 (440)
Q Consensus       214 ~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~-----~~~~~p~gl~~---~~-~~ly~-td~----  278 (440)
                      ....+|.+++.|...+++|+++...+.|.+++.++.....+.- +     ....+|.||.+   +. ++|++ ++.    
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3456899999998899999999999999999998665554422 1     11347899999   44 47877 442    


Q ss_pred             --------CCCeEEEEecc---CCCceEEEe--c-----------C-CCCeEEEEeccCCCCCCCCCceeEEeecCCc-c
Q psy14258        279 --------RNQSIIRVNKF---NSDDYETIA--N-----------F-SRPFAIHIYHRQKQPDALKPSTFLLYAKGKP-A  332 (440)
Q Consensus       279 --------~~~~i~~~~~~---~g~~~~~~~--~-----------~-~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~-~  332 (440)
                              ....|.+++..   +++....+.  .           . ..+.++++.          +++-.|++++.. +
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD----------~~GnaYVt~s~~~~  159 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD----------RDGNSYVAFALGMP  159 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC----------TTSCEEEEEEESSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC----------CCCCEEEeCCCCCC
Confidence                    25678899987   566654321  1           1 125566666          467899988888 8


Q ss_pred             EEEEEEcCCCCCCceeeee---ecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEE-EE-----CCCCCeee
Q psy14258        333 IIKGLTFKRDGTTEQAIMP---ITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVV-ID-----TGIYNVEG  403 (440)
Q Consensus       333 ~I~~i~~~~~~~~~~~~~~---~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~-~~-----~~~~~~~g  403 (440)
                      .|.+++.++. ........   ......+.||+|++.++.|++++. .++|+++++....+..+ ..     ..+..|+|
T Consensus       160 ~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dg  237 (334)
T 2p9w_A          160 AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEK  237 (334)
T ss_dssp             EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEE
T ss_pred             eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCccc
Confidence            9999999987 22110000   111224679999999999999998 99999999984322112 11     13578999


Q ss_pred             E-EEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        404 M-AVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       404 l-AvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      | +++..++-|++++...+++.+.+.||
T Consensus       238 ilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          238 IVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             ccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            5 88876766699998888888888877

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.13  E-value=2.7e-07  Score=89.41  Aligned_cols=284  Identities=9%  Similarity=-0.023  Sum_probs=165.4

Q ss_pred             ecccEEEEEEc-CCC---CceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEec-------------
Q psy14258         90 YMEHCMIAIDL-NLS---KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYPE-------------  151 (440)
Q Consensus        90 ~~~~~ly~~d~-~~~---~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~~-------------  151 (440)
                      +..+++|.+|. ...   .|..++.+...  .+      ..  +..+ ..| + ++.+.++.||+++             
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~--~~------~~--i~~g-~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGS--IL------GH--VNGG-FLP-NPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCe--EE------EE--ecCC-CCC-CeEECCCCCEEEEEeccccccccCCCCC
Confidence            44577888886 444   44555543221  11      11  2222 357 9 9999999999982             


Q ss_pred             eEEEEecCCceE-EEEEcC-C-----CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEE
Q psy14258        152 AIYFCTHYMEHC-MIAIDL-N-----LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV  224 (440)
Q Consensus       152 ~I~~~~~dg~~~-~~~~~~-~-----~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~v  224 (440)
                      .|.+.+...... ..+-.. .     ...|++++++|..++||.++.... ..|...+ +..  +.+.. .+..|.++.+
T Consensus        98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~-~~v~viD-~t~--~~~~~-~i~~~~~~~~  172 (373)
T 2mad_H           98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG-PAVGLVV-QGG--SSDDQ-LLSSPTCYHI  172 (373)
T ss_pred             eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC-CeEEEEE-CCC--CEEeE-EcCCCceEEE
Confidence            377888764322 222111 0     257999999999999999986532 4788887 533  22222 0233445666


Q ss_pred             eCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCC--ccCceeee----eEecCEEEEEecCCCeEEEEeccCCCceEEEe
Q psy14258        225 DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGF--PVQNLYDI----TVFENNLFVTSWRNQSIIRVNKFNSDDYETIA  298 (440)
Q Consensus       225 D~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~--~~~~p~gl----~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~  298 (440)
                      .+.+.+.|++....+++..++..|.....+....  .-..|...    .-+++.+||.. ..+.|+.++..++.. .++.
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~-~v~~  250 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGA-TNKA  250 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcc-eEee
Confidence            6677888998888888888888333221221000  01122111    12245666665 456788888754422 1111


Q ss_pred             cCC-----------CCeEEE--EeccCCCCCCCCCc-eeEEeecCC---------ccEEEEEEcCCCCCCceeeeeecCC
Q psy14258        299 NFS-----------RPFAIH--IYHRQKQPDALKPS-TFLLYAKGK---------PAIIKGLTFKRDGTTEQAIMPITDL  355 (440)
Q Consensus       299 ~~~-----------~p~~~~--v~~~~~qp~~~~~~-~~l~~~~~~---------~~~I~~i~~~~~~~~~~~~~~~~~~  355 (440)
                      ...           .|.+..  .+         .++ ..||++...         .+.|..|++...    +....+..-
T Consensus       251 ~~~~~~~~~~~~~~~p~g~~~~~~---------s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~----~vv~~i~~g  317 (373)
T 2mad_H          251 PIDALSGGRKADTWRPGGWQQVAY---------LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG----QTSSQISLG  317 (373)
T ss_pred             eeeecCCcccccceecCceEeEEE---------CCCCCEEEEEeccCCcccccCCCCeEEEEECCCC----EEEEEEECC
Confidence            110           233311  12         123 567775431         257888988665    333333333


Q ss_pred             CCceEEEEEcCCC-EEEEEECCCCeEEEEecCCCCeEEE-EECCCCCeeeEEE
Q psy14258        356 KRPSVIDYHEKEE-YIYYAELTSYVIERRKMFGRGKEVV-IDTGIYNVEGMAV  406 (440)
Q Consensus       356 ~~p~~l~~d~~~~-~vy~~d~~~~~I~r~~~~g~~~~~~-~~~~~~~~~glAv  406 (440)
                      ..|.+++++++++ .+|.++...+.|..+++........ +..| ..|.+|.+
T Consensus       318 ~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG-~~P~~~~~  369 (373)
T 2mad_H          318 HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG-SGPQVLSV  369 (373)
T ss_pred             CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCC-CCCcEEEE
Confidence            4799999999998 7888877799999999986443322 3333 56888875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.12  E-value=5.4e-08  Score=87.46  Aligned_cols=201  Identities=11%  Similarity=0.075  Sum_probs=132.9

Q ss_pred             cce-eeeecCCcEEEe------ceEEEEecCCceE-EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258        136 GTE-RFPMVTHKIVYP------EAIYFCTHYMEHC-MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  207 (440)
Q Consensus       136 p~~-avD~~~~~lY~~------~~I~~~~~dg~~~-~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~  207 (440)
                      -.| ++|.  +.||.+      .+|.+.++..... ..+--..-....||+++  .++||..+|..  .++.+.+.+.-.
T Consensus        23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~--~~v~v~D~~tl~   96 (243)
T 3mbr_X           23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRN--HEGFVYDLATLT   96 (243)
T ss_dssp             EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSS--SEEEEEETTTTE
T ss_pred             cccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeC--CEEEEEECCcCc
Confidence            456 7774  789999      3799999975443 33321222334677776  58999999987  599999985433


Q ss_pred             ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC-cEEEec---CCccCceeeeeEecCEEEEEecCCCeE
Q psy14258        208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD-RKTIRK---GFPVQNLYDITVFENNLFVTSWRNQSI  283 (440)
Q Consensus       208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~-~~~i~~---~~~~~~p~gl~~~~~~ly~td~~~~~i  283 (440)
                      ...-+.-. ..+.||+-|  +++||.+| +.++|..+|..... ...+..   +..+..+..|...++.||...|.++.|
T Consensus        97 ~~~ti~~~-~~Gwglt~d--g~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I  172 (243)
T 3mbr_X           97 PRARFRYP-GEGWALTSD--DSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRI  172 (243)
T ss_dssp             EEEEEECS-SCCCEEEEC--SSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEE
T ss_pred             EEEEEeCC-CCceEEeeC--CCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeE
Confidence            22222222 345677764  88999999 48899999875433 333322   223456677888889999999999999


Q ss_pred             EEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEE
Q psy14258        284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDY  363 (440)
Q Consensus       284 ~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~  363 (440)
                      .++|..+|+....+.                                        +.+- .............-|.||||
T Consensus       173 ~vIDp~tG~V~~~id----------------------------------------l~~l-~~~~~~~~~~~~~vlNGIA~  211 (243)
T 3mbr_X          173 ARIDPASGKVVAWID----------------------------------------LQAL-VPDADALTDSTNDVLNGIAF  211 (243)
T ss_dssp             EEECTTTCBEEEEEE----------------------------------------CGGG-STTTTSCCCTTSSCEEEEEE
T ss_pred             EEEECCCCCEEEEEE----------------------------------------CCcC-ccccccccCCcCCceEEEEE
Confidence            999998886554332                                        1110 00000000012235899999


Q ss_pred             EcCCCEEEEEECCCCeEEEEecCC
Q psy14258        364 HEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       364 d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      |+.++++|+|...=..+|++.+..
T Consensus       212 d~~~~~lfVTGK~wp~~~~v~~~~  235 (243)
T 3mbr_X          212 DAEHDRLFVTGKRWPMLYEIRLTP  235 (243)
T ss_dssp             ETTTTEEEEEETTCSEEEEEEECC
T ss_pred             cCCCCEEEEECCCCCcEEEEEEec
Confidence            999999999998778899988764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.09  E-value=4.2e-07  Score=87.64  Aligned_cols=256  Identities=7%  Similarity=-0.070  Sum_probs=148.0

Q ss_pred             cccce-eeeecCCcEEEec-------------eEEEEecCCce-EEEEEcC-----CCCCceEEEEcCCCCeEEEEEcCC
Q psy14258        134 LDGTE-RFPMVTHKIVYPE-------------AIYFCTHYMEH-CMIAIDL-----NLSKPRGIALDPTSGYMFFTKWGA  193 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~~-------------~I~~~~~dg~~-~~~~~~~-----~~~~P~~iavd~~~g~lywtd~~~  193 (440)
                      ..| + ++++.++.||+++             .|.+.+..... ...+-..     ....|.+|+++|..++||.++...
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~  129 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP  129 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence            468 9 9999999999982             38888876433 2333211     135799999999888999998752


Q ss_pred             CCCcEEEEeCCCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE--Eec-C--CccCceeeee
Q psy14258        194 TRPMLERSLLDGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT--IRK-G--FPVQNLYDIT  267 (440)
Q Consensus       194 ~~~~I~r~~~dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~--i~~-~--~~~~~p~gl~  267 (440)
                      . ..|...+++..  +.+.. .......++.+.+.+.+.|++....+++..++.+......  ... .  ..-..|..+.
T Consensus       130 ~-~~v~v~d~~~~--~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~  206 (361)
T 2oiz_A          130 A-TSIGIVDVAKG--DYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA  206 (361)
T ss_dssp             S-EEEEEEETTTT--EEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred             C-CeEEEEECCCC--cEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence            2 48888888643  33322 2222223344554454556555555666666554322111  110 0  0012333332


Q ss_pred             E--ecCEEEEEecCCCeEEEEeccCCCceEE--EecCC--------CCeE---EEEeccCCCCCCCCCc-eeEEeecC--
Q psy14258        268 V--FENNLFVTSWRNQSIIRVNKFNSDDYET--IANFS--------RPFA---IHIYHRQKQPDALKPS-TFLLYAKG--  329 (440)
Q Consensus       268 ~--~~~~ly~td~~~~~i~~~~~~~g~~~~~--~~~~~--------~p~~---~~v~~~~~qp~~~~~~-~~l~~~~~--  329 (440)
                      .  .++.+++... .+.|+.++...++...+  +....        .|.+   +. ++         |+ ..+|++..  
T Consensus       207 ~~~~g~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a-~~---------~dg~~lyv~~~~~  275 (361)
T 2oiz_A          207 PALDKDKAHFVSY-YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG-LH---------RASGRMYVFMHPD  275 (361)
T ss_dssp             CEECSSEEEEEBT-TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE-EE---------TTTTEEEEEEESS
T ss_pred             ecccCCEEEEEeC-CCeEEEEEecCCCceecccccccCccccccccccCCeeEEE-Ee---------cCCCeEEEEEccC
Confidence            2  2346666553 56777777644332211  10000        1222   22 22         23 56777643  


Q ss_pred             --------CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE--CCCC
Q psy14258        330 --------KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID--TGIY  399 (440)
Q Consensus       330 --------~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~--~~~~  399 (440)
                              ....|..+++...    .....+..-. |.+|++++.+++||.++.  ++|..+++.....+.+-.  ..-.
T Consensus       276 ~~~~~~~~~~~~v~viD~~t~----~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~  348 (361)
T 2oiz_A          276 GKEGTHKFPAAEIWVMDTKTK----QRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAE  348 (361)
T ss_dssp             CCTTCTTCCCSEEEEEETTTT----EEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCS
T ss_pred             CCcccccCCCceEEEEECCCC----cEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCC
Confidence                    1247888887665    3333333333 999999999999999884  999999987642233322  2236


Q ss_pred             CeeeEEEecCCC
Q psy14258        400 NVEGMAVDWMAN  411 (440)
Q Consensus       400 ~~~glAvD~~~~  411 (440)
                      .|.+|++++.++
T Consensus       349 ~P~~~~~~p~G~  360 (361)
T 2oiz_A          349 ASLQVQFHPVGG  360 (361)
T ss_dssp             SEEEEEECCCSC
T ss_pred             CcEEEEecCCCC
Confidence            899999998775

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.06  E-value=6.7e-08  Score=87.66  Aligned_cols=188  Identities=8%  Similarity=0.014  Sum_probs=130.9

Q ss_pred             ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC-CCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC-CCc
Q psy14258        174 PRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG-TDR  251 (440)
Q Consensus       174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~d-G~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG-~~~  251 (440)
                      -+||.++.  +.||.+....  ++|.+.++. |.....+ ...-....|++++  +++||.++...+.+..+|... ...
T Consensus        57 tqGL~~~~--~~Ly~stG~~--g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQ--GTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EEEEEEET--TEEEEEETTT--TEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cceEEEEC--CEEEEEcCCC--CEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            47999984  8999999765  578888886 4444444 3332234567775  889999999999999998753 333


Q ss_pred             EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCCC------CeEEEEeccCCCCCCCCCceeEE
Q psy14258        252 KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSR------PFAIHIYHRQKQPDALKPSTFLL  325 (440)
Q Consensus       252 ~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~------p~~~~v~~~~~qp~~~~~~~~l~  325 (440)
                      ..+..   -..+.|++.+++.||.+| +++.|..+|..+.+....+.-..+      +..+...           ++.||
T Consensus       130 ~ti~~---~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-----------dG~ly  194 (268)
T 3nok_A          130 RTTRY---SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-----------NGVIY  194 (268)
T ss_dssp             EEEEC---SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-----------TTEEE
T ss_pred             EEEeC---CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-----------CCEEE
Confidence            44433   245789999999999999 589999999988877664432112      2233322           45677


Q ss_pred             eecCCccEEEEEEcCCCCCCceeeeeec------------CCCCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        326 YAKGKPAIIKGLTFKRDGTTEQAIMPIT------------DLKRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       326 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~------------~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                      +..-..+.|.+|++... .- ...+.+.            ...-|.|||||+.++++|+|...=..+|++.+
T Consensus       195 anvw~s~~I~vIDp~TG-~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATG-TV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             EEETTCSEEEEECTTTC-BE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             EEECCCCeEEEEeCCCC-cE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            77655688999988655 11 1122222            12367899999999999999877778888876

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.06  E-value=3.7e-08  Score=97.95  Aligned_cols=248  Identities=7%  Similarity=-0.021  Sum_probs=154.7

Q ss_pred             eeccccccce-eeeecCC-cEEEe---ceEEEEecCCceE-EEEE------cCC-----CCCceEEEEcCC---CCeEEE
Q psy14258        129 LERSLLDGTE-RFPMVTH-KIVYP---EAIYFCTHYMEHC-MIAI------DLN-----LSKPRGIALDPT---SGYMFF  188 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~-~lY~~---~~I~~~~~dg~~~-~~~~------~~~-----~~~P~~iavd~~---~g~lyw  188 (440)
                      +.+++..|.+ |+++.+. .||++   ++|.+.+.+|... ..+.      ...     ..-+.+||++|.   +++||+
T Consensus         9 va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv   88 (463)
T 2wg3_C            9 VVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV   88 (463)
T ss_dssp             EEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred             eccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence            4578999999 9999874 69999   7899988877531 1111      111     345789999995   688888


Q ss_pred             EEcCCC----------CCcEEEEeCCCC--------CceeEEec----CccCceEEEEeCCCCEEEEEeC--C-------
Q psy14258        189 TKWGAT----------RPMLERSLLDGT--------ERFPMVTH----KIVYPYGVTVDFPTKHVYWVDT--Y-------  237 (440)
Q Consensus       189 td~~~~----------~~~I~r~~~dG~--------~~~~l~~~----~~~~P~gl~vD~~~~~ly~~d~--~-------  237 (440)
                      +-....          ..+|.|+.++..        ..++|+..    ...+...|++++ .++||++-.  .       
T Consensus        89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~  167 (463)
T 2wg3_C           89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDME  167 (463)
T ss_dssp             EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHH
T ss_pred             EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCccc
Confidence            753211          027888888632        23344432    233466799995 569999842  1       


Q ss_pred             --------CCcEEEEEccCC--------------------CcEEEecCCccCceeeeeEecC--------EEEEEec-C-
Q psy14258        238 --------LDFIDRINYDGT--------------------DRKTIRKGFPVQNLYDITVFEN--------NLFVTSW-R-  279 (440)
Q Consensus       238 --------~~~i~~~~~dG~--------------------~~~~i~~~~~~~~p~gl~~~~~--------~ly~td~-~-  279 (440)
                              .++|.+++.||+                    ..++...+  +++|+|++++..        ++|.+|. + 
T Consensus       168 ~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G--~RNp~gla~dp~tg~~~G~l~~~~~D~~G~  245 (463)
T 2wg3_C          168 EMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHG--LHDPGRCAVDRHPTDININLTILCSDSNGK  245 (463)
T ss_dssp             HCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEEC--CSSCCBEEEESSCSSTTCSEEEEEECC---
T ss_pred             cccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEEC--CCCcceEEECCCCCCcccceEEEecccCCC
Confidence                    358999999994                    23445556  899999999864        7888885 2 


Q ss_pred             ---CCeEEEEecc--CCC--ceEEEecC--CCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCC-ceee
Q psy14258        280 ---NQSIIRVNKF--NSD--DYETIANF--SRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTT-EQAI  349 (440)
Q Consensus       280 ---~~~i~~~~~~--~g~--~~~~~~~~--~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~-~~~~  349 (440)
                         ...|..+.+-  -|-  ....+..-  ..|.++.+|....-|.   -.+-+++++.. ++|.++.++..+.. .+..
T Consensus       246 ~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~---~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~  321 (463)
T 2wg3_C          246 NRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSER---LYGSYVFGDRN-GNFLTLQQSPVTKQWQEKP  321 (463)
T ss_dssp             ---CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTT---TTTCEEEEETT-SCEEEEEC-----CCEEEE
T ss_pred             CCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChh---hcceEEEecCC-CcEEEEEeCCCCceeeEEE
Confidence               2345444221  111  11112111  3578888886555442   23557777765 78999988765222 1111


Q ss_pred             eee--------cCCCCceEEEEEcCCCEEEEEEC-------CCCeEEEEe
Q psy14258        350 MPI--------TDLKRPSVIDYHEKEEYIYYAEL-------TSYVIERRK  384 (440)
Q Consensus       350 ~~~--------~~~~~p~~l~~d~~~~~vy~~d~-------~~~~I~r~~  384 (440)
                      +..        ....+|.+++.+++ +.||++|.       ..++|+|+.
T Consensus       322 ~~~g~~~~~~~~~~~r~~~v~~~pd-G~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          322 LCLGTSGSCRGYFSGHILGFGEDEL-GEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             ECEEETTSSCSCCCSEEEEEEECTT-CCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             eecCCcccccccccCcceEEEECCC-CCEEEEeccCCcccCCCCcEEEec
Confidence            110        11347899999986 56999986       578999997

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.05  E-value=5.3e-09  Score=100.94  Aligned_cols=277  Identities=7%  Similarity=-0.079  Sum_probs=164.8

Q ss_pred             ccEEEEEEcCCC----CceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEec-------------eE
Q psy14258         92 EHCMIAIDLNLS----KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYPE-------------AI  153 (440)
Q Consensus        92 ~~~ly~~d~~~~----~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~~-------------~I  153 (440)
                      ..++|.++...+    +|..++.+  ..+.+      ..  +..+ ..| + ++++.++.||+++             .|
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~~--t~~v~------~~--i~vG-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~V   98 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCAG--CGVTL------GH--SLGA-FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYV   98 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETT--TTEEE------EE--EEEC-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred             CCeEEEECCccCCccceEEEEECC--CCeEE------EE--EeCC-CCC-ceEECCCCCEEEEEcccccccccCCCCCEE
Confidence            367999998766    44344433  22221      11  2222 358 9 9999999999982             48


Q ss_pred             EEEecCCceE-EEEEcC------CCCCceEEEEcCCCCeEEEEEcCCCCCcEEE--EeCCCCCceeEEecCccCceEEEE
Q psy14258        154 YFCTHYMEHC-MIAIDL------NLSKPRGIALDPTSGYMFFTKWGATRPMLER--SLLDGTERFPMVTHKIVYPYGVTV  224 (440)
Q Consensus       154 ~~~~~dg~~~-~~~~~~------~~~~P~~iavd~~~g~lywtd~~~~~~~I~r--~~~dG~~~~~l~~~~~~~P~gl~v  224 (440)
                      .+.|+..... ..+-..      ....|++|+++|..++||.++.... ..+..  .++..  ...+ .  +  |.++.+
T Consensus        99 sviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~-~~v~V~~iD~~t--v~~i-~--v--~~~~~~  170 (368)
T 1mda_H           99 EVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS-AAAGLSVPGASD--DQLT-K--S--ASCFHI  170 (368)
T ss_dssp             EEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS-CEEEEEETTTEE--EEEE-E--C--SSCCCC
T ss_pred             EEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC-CeEEEEEEchhh--ceEE-E--C--CCceEE
Confidence            8888876443 333211      1257999999999889999997632 36666  44433  2222 1  1  112233


Q ss_pred             eCCCCEEEEEeCCCCcEEEEEccCCCc---EEEe----cCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        225 DFPTKHVYWVDTYLDFIDRINYDGTDR---KTIR----KGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       225 D~~~~~ly~~d~~~~~i~~~~~dG~~~---~~i~----~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      .+.++++|.+....+++..++++..++   +.+.    .-..-..|.. .-.++.+||+..  +.|..++..+++. +++
T Consensus       171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~--~~V~viD~~~~~~-~v~  246 (368)
T 1mda_H          171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA--SSILQGDIPAAGA-TMK  246 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS--SCCEEEECCSSCC-EEE
T ss_pred             ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC--CEEEEEECCCCcc-eEE
Confidence            445778888888888888888765111   1110    0000134652 333557888876  8888888754322 222


Q ss_pred             ecCC-----------CCeE---EEEeccCCCCCCCCCc-eeEEeecC---C-----ccEEEEEEcCCCCCCceeeeeecC
Q psy14258        298 ANFS-----------RPFA---IHIYHRQKQPDALKPS-TFLLYAKG---K-----PAIIKGLTFKRDGTTEQAIMPITD  354 (440)
Q Consensus       298 ~~~~-----------~p~~---~~v~~~~~qp~~~~~~-~~l~~~~~---~-----~~~I~~i~~~~~~~~~~~~~~~~~  354 (440)
                      ....           .|.+   +.+.          ++ ..||++..   +     ...+..|++...    .....+..
T Consensus       247 ~~~~~~~~~~~~~~~~p~g~~~v~~s----------~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~----~vv~~i~v  312 (368)
T 1mda_H          247 AAIDGNESGRKADNFRSAGFQMVAKL----------KNTDGIMILTVEHSRSCLAAAENTSSVTASVG----QTSGPISN  312 (368)
T ss_dssp             CCCCSSCTHHHHTTEEECSSSCEEEE----------TTTTEEEEEEEECSSCTTSCEEEEEEEESSSC----CEEECCEE
T ss_pred             EEEEeccccccccccccCcceeeEEc----------CCCCEEEEEeccccCcccccCCCEEEEECCCC----eEEEEEEC
Confidence            2111           2222   2222          23 56777643   2     245557787665    22222222


Q ss_pred             CCCceEEEEEcCCCEEEEEEC-CCCeEEEEecCCCCeEEEEECCCCCeeeEEEe
Q psy14258        355 LKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVD  407 (440)
Q Consensus       355 ~~~p~~l~~d~~~~~vy~~d~-~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD  407 (440)
                      -..|.+|+++++++++|++.. ..++|..+++.......-+. -...|.||+++
T Consensus       313 g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~-vg~~P~~i~~~  365 (368)
T 1mda_H          313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE-LDKGPESLSVQ  365 (368)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC-CCSCCCEEECC
T ss_pred             CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE-CCCCCCEEEee
Confidence            236999999999989999998 69999999998643222233 23689999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.03  E-value=1e-07  Score=93.64  Aligned_cols=278  Identities=6%  Similarity=-0.093  Sum_probs=150.1

Q ss_pred             eeEEEEeecccce-eeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcC---------CCCceeEEeCCCCCc
Q psy14258         47 KTHLYETIEAFWE-ECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLN---------LSKPRGIALDPTSGY  116 (440)
Q Consensus        47 ~~ll~s~~~~~~~-~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~---------~~~I~~~~~~~~~~~  116 (440)
                      ..+++++...... +.|..+++......-.++.... + ++++++.+++||.++..         .+.|..++..  ..+
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~--t~~  160 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL-P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV--TFL  160 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS-C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCC
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC-C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC--CCc
Confidence            3477777621111 4499999987776644444332 8 99999999999999852         3445554433  222


Q ss_pred             ceeeccccccceee--c---cccccce-eeeecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCe
Q psy14258        117 MFFTKWGATRPMLE--R---SLLDGTE-RFPMVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGY  185 (440)
Q Consensus       117 ~~~~~~~~~~v~~~--~---~~~~p~~-avD~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~  185 (440)
                      ..      ..+.+.  .   ....|.+ ++++.++.||++     +.|.+.|+.......-+..    |....+.|....
T Consensus       161 vv------~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v----~g~~~~~p~g~~  230 (426)
T 3c75_H          161 PI------ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV----PDCYHIFPASPT  230 (426)
T ss_dssp             EE------EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSEEEEEEEETT
T ss_pred             EE------EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc----CCceeeccCCCc
Confidence            11      111110  0   1357999 999999999998     4799998886554322221    112223332234


Q ss_pred             EEEEEcCCCCCcEEEEeCCCCCcee-----EEecCccCce--EEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC-
Q psy14258        186 MFFTKWGATRPMLERSLLDGTERFP-----MVTHKIVYPY--GVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-  257 (440)
Q Consensus       186 lywtd~~~~~~~I~r~~~dG~~~~~-----l~~~~~~~P~--gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~-  257 (440)
                      .|.+....  +++...++. .+...     .+. .-..|.  .+++++..+++|++.. .+.+..++..+.....+..- 
T Consensus       231 ~~v~~~~d--G~~~~V~~~-~~~v~~~~~~~~~-v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~~  305 (426)
T 3c75_H          231 VFYMNCRD--GSLARVDFA-DGETKVTNTEVFH-TEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPIE  305 (426)
T ss_dssp             EEEEEETT--SSEEEEECC-TTCCEEEECCCCS-CTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCEE
T ss_pred             EEEEEcCC--CCEEEEECC-CCcEEEEeeeeec-cCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeeee
Confidence            44444333  244444441 11111     011 011232  2355767788888764 57888888876554433210 


Q ss_pred             ----Cc---cCceee---eeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEE
Q psy14258        258 ----FP---VQNLYD---ITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLL  325 (440)
Q Consensus       258 ----~~---~~~p~g---l~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~  325 (440)
                          ..   ...|.|   +++.  ++++|+++....        .+.                   .++           
T Consensus       306 ~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~--------~gt-------------------hk~-----------  347 (426)
T 3c75_H          306 ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD--------EWK-------------------HKA-----------  347 (426)
T ss_dssp             SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC--------TTC-------------------TTS-----------
T ss_pred             eccccccccccccCCceeeEEcCCCCEEEEEecccc--------ccc-------------------ccC-----------
Confidence                00   012433   4554  457887753100        000                   000           


Q ss_pred             eecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCC-EEEEEECCCCeEEEEecCCCC
Q psy14258        326 YAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE-YIYYAELTSYVIERRKMFGRG  389 (440)
Q Consensus       326 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~-~vy~~d~~~~~I~r~~~~g~~  389 (440)
                          ..+.|..|++... .. -..+++.  ..|.+|+|+++++ .+|+++...+.|..+++....
T Consensus       348 ----~s~~VsVID~~T~-kv-v~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          348 ----ASRFVVVLNAETG-ER-INKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             ----CEEEEEEEETTTC-CE-EEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ----CCCEEEEEECCCC-eE-EEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence                0023333333322 00 0122222  2589999999999 999999889999999997543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.02  E-value=3.4e-07  Score=89.34  Aligned_cols=224  Identities=9%  Similarity=0.006  Sum_probs=140.1

Q ss_pred             CCCCeEEEEEcCCCCCcEEEEeCCCCCc-eeEEe----------cCccCceEEEEeCCCCEEEEEeCCC------CcEEE
Q psy14258        181 PTSGYMFFTKWGATRPMLERSLLDGTER-FPMVT----------HKIVYPYGVTVDFPTKHVYWVDTYL------DFIDR  243 (440)
Q Consensus       181 ~~~g~lywtd~~~~~~~I~r~~~dG~~~-~~l~~----------~~~~~P~gl~vD~~~~~ly~~d~~~------~~i~~  243 (440)
                      +.+.+||.+...+  .+|...+..-..+ -.+..          .+...|.++.+-+.+  ||++..+.      +.|..
T Consensus        93 ~~r~~l~v~~l~s--~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRS--SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTT--CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCC--CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEE
Confidence            5578999999887  5999999853311 12221          134578889987554  99877655      57888


Q ss_pred             EEccCCCc-EEEecCC-ccCceeeeeE--ecCEEEEEecC------------------CCeEEEEeccCCCceEEEecC-
Q psy14258        244 INYDGTDR-KTIRKGF-PVQNLYDITV--FENNLFVTSWR------------------NQSIIRVNKFNSDDYETIANF-  300 (440)
Q Consensus       244 ~~~dG~~~-~~i~~~~-~~~~p~gl~~--~~~~ly~td~~------------------~~~i~~~~~~~g~~~~~~~~~-  300 (440)
                      +|.....+ ..+..+. ....++.+.+  ..+.+|.++|.                  .++|..++..+++....+.-. 
T Consensus       169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~  248 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE  248 (462)
T ss_dssp             ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred             EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence            87664333 2222221 1122333444  35688888875                  788998888776555444322 


Q ss_pred             --CCCeEEEEeccCCCCCCCCCc-eeEEeecC-----CccEEEEEEcCCCCCCce-eeeeecC-----------------
Q psy14258        301 --SRPFAIHIYHRQKQPDALKPS-TFLLYAKG-----KPAIIKGLTFKRDGTTEQ-AIMPITD-----------------  354 (440)
Q Consensus       301 --~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~-----~~~~I~~i~~~~~~~~~~-~~~~~~~-----------------  354 (440)
                        ..|.++++.+        .|+ .++|++..     ..+.|..+..+.. .... ..+.+..                 
T Consensus       249 ~g~~P~~i~f~~--------~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          249 ENRMALELRPLH--------DPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             TEEEEEEEEECS--------STTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             CCCccceeEeeE--------CCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccC
Confidence              2466776532        122 46666655     4577766555432 1110 0110000                 


Q ss_pred             CCCceEEEEEcCCCEEEEEECCCCeEEEEecC-CCCeEEEE--ECC-C-------------CCeeeEEEecCCCcEEEEe
Q psy14258        355 LKRPSVIDYHEKEEYIYYAELTSYVIERRKMF-GRGKEVVI--DTG-I-------------YNVEGMAVDWMANNLYWTD  417 (440)
Q Consensus       355 ~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~-g~~~~~~~--~~~-~-------------~~~~glAvD~~~~~lYwtd  417 (440)
                      -..|.+|.+.+++++||+++...+.|..++.. ....+.+-  ..| .             ..|.+|++++.+++||+|+
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            14588999999999999999999999999974 33333332  222 1             2599999999999999999

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.99  E-value=9.6e-07  Score=83.53  Aligned_cols=261  Identities=10%  Similarity=-0.031  Sum_probs=153.4

Q ss_pred             EEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecC
Q psy14258         85 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHY  159 (440)
Q Consensus        85 ~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~d  159 (440)
                      |+++.. ++++|.+....+.|+..++.......        .+.. .....|.+ ++++.++.+|++    +.|.+.+++
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~--------~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~   73 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYK--------SCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   73 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEE--------EEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEE--------EEec-CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence            344443 47788888887888777664322110        1111 11125888 999988888988    689999988


Q ss_pred             CceEEEEEcCC------CCCceEEEEcCCCCeEEEEEcC-----------CCCCcEEEEeCCCCCc-e--eEEecCccCc
Q psy14258        160 MEHCMIAIDLN------LSKPRGIALDPTSGYMFFTKWG-----------ATRPMLERSLLDGTER-F--PMVTHKIVYP  219 (440)
Q Consensus       160 g~~~~~~~~~~------~~~P~~iavd~~~g~lywtd~~-----------~~~~~I~r~~~dG~~~-~--~l~~~~~~~P  219 (440)
                      +......+...      ...|.+++++|...+||.+...           .  ..|...++..... +  .... ....+
T Consensus        74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~-~~~~~  150 (349)
T 1jmx_B           74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP--PRLEVFSTADGLEAKPVRTFP-MPRQV  150 (349)
T ss_dssp             TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC--CEEEEEEGGGGGGBCCSEEEE-CCSSC
T ss_pred             CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCC--CeEEEEECCCccccceeeecc-CCCcc
Confidence            65544333211      2348999999987789998843           2  4899988864221 1  1222 22357


Q ss_pred             eEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEecCC----------------------ccCceeeeeEec------
Q psy14258        220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGF----------------------PVQNLYDITVFE------  270 (440)
Q Consensus       220 ~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~----------------------~~~~p~gl~~~~------  270 (440)
                      .++++++.+. ||+++   +.|..++...... ..+..+.                      .+..|.++++..      
T Consensus       151 ~~~~~s~dg~-l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  226 (349)
T 1jmx_B          151 YLMRAADDGS-LYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP  226 (349)
T ss_dssp             CCEEECTTSC-EEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred             cceeECCCCc-EEEcc---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence            8888997666 88863   3488888754433 3332221                      001455565542      


Q ss_pred             -----CEEEE-EecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCC-c-eeEEeecCCccEEEEEEcCCC
Q psy14258        271 -----NNLFV-TSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKP-S-TFLLYAKGKPAIIKGLTFKRD  342 (440)
Q Consensus       271 -----~~ly~-td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~-~-~~l~~~~~~~~~I~~i~~~~~  342 (440)
                           ...|+ .+..++.+..++..        .....|.++.+.          | + .+|+++   .+.|..+++...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s----------p~dg~~l~~~---~~~v~~~d~~~~  285 (349)
T 1jmx_B          227 ATADLLYGYLSVDLKTGKTHTQEFA--------DLTELYFTGLRS----------PKDPNQIYGV---LNRLAKYDLKQR  285 (349)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEE--------ECSSCEEEEEEC----------SSCTTEEEEE---ESEEEEEETTTT
T ss_pred             cccccceeEEEEeccCCcEEecccc--------cCCCcceeeEec----------CCCCCEEEEE---cCeEEEEECccC
Confidence                 22333 33333333332221        011234455443          3 3 466666   378999988655


Q ss_pred             CCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        343 GTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       343 ~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                          .....+..-..|.++++++.+++||++ ...+.|...++...
T Consensus       286 ----~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          286 ----KLIKAANLDHTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTL  326 (349)
T ss_dssp             ----EEEEEEECSSCCCEEEECSSSSCEEEE-SBSSEEEEEETTTT
T ss_pred             ----eEEEEEcCCCCccceEECCCCCEEEEe-cCCCeEEEEecccc
Confidence                222222233468899999999999986 45689999998754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.98  E-value=2.3e-08  Score=100.71  Aligned_cols=266  Identities=11%  Similarity=0.024  Sum_probs=173.5

Q ss_pred             cCCcEEEe----ceEEEEecCCceEEEEEcCC-CCCceEEEEc--CCCCeEEEEEcCC---------------CCCcEEE
Q psy14258        143 VTHKIVYP----EAIYFCTHYMEHCMIAIDLN-LSKPRGIALD--PTSGYMFFTKWGA---------------TRPMLER  200 (440)
Q Consensus       143 ~~~~lY~~----~~I~~~~~dg~~~~~~~~~~-~~~P~~iavd--~~~g~lywtd~~~---------------~~~~I~r  200 (440)
                      .++.||++    .+|.|.+++...+..++... ...|+|+++.  |..+++|.+....               ....+..
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            57789999    78999999998877666543 3679999984  8889999995210               0125555


Q ss_pred             EeCCCCCceeEEecCc-cCceEEEEeCCCCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCccCceeeee-E-ecCEEEEE
Q psy14258        201 SLLDGTERFPMVTHKI-VYPYGVTVDFPTKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFPVQNLYDIT-V-FENNLFVT  276 (440)
Q Consensus       201 ~~~dG~~~~~l~~~~~-~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~~~~p~gl~-~-~~~~ly~t  276 (440)
                      .+.+  ..+++.+-.+ +.|.++++++.++++|++...++....++- ....+..+.-   +..|...+ + .++..|. 
T Consensus       180 ID~~--t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V---~~~~~~~~~v~~Gk~~~i-  253 (595)
T 1fwx_A          180 VDAD--KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV---FNIAEIEKAIAAGDYQEL-  253 (595)
T ss_dssp             EETT--TTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE---EEHHHHHHHHHHTCSEEE-
T ss_pred             EECC--CCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEE---eeccceeEeccCCCeeEE-
Confidence            5555  4444443322 479999999999999999976654322221 1122222221   11122111 1 2345554 


Q ss_pred             ecCCCeEEEEeccC--CCc-eEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCC-------CC
Q psy14258        277 SWRNQSIIRVNKFN--SDD-YETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDG-------TT  345 (440)
Q Consensus       277 d~~~~~i~~~~~~~--g~~-~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~-------~~  345 (440)
                          +.|..++..+  ++. ...+.....|.++.+.          |+ .++++++.....|..++++...       ..
T Consensus       254 ----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~s----------PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~  319 (595)
T 1fwx_A          254 ----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMA----------PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP  319 (595)
T ss_dssp             ----TTEEEEECSGGGCCSSEEEEEEESSCCCEEEC----------TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred             ----CcEEEEeCcccCCceeEEEEecCCCceEEEEc----------CCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence                4577788766  444 3344444468888776          44 7899999888999999987430       00


Q ss_pred             -ceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC--------CeEEEE--ECCCCCe------eeEEEec
Q psy14258        346 -EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR--------GKEVVI--DTGIYNV------EGMAVDW  408 (440)
Q Consensus       346 -~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~--------~~~~~~--~~~~~~~------~glAvD~  408 (440)
                       ..+...+.--..|..++||+.+ .+|.+..-++.|.+.+.+..        ..+++-  ..+ ..|      .|+++.+
T Consensus       320 ~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpGh~~~~~g~t~~~  397 (595)
T 1fwx_A          320 RSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGHLKTVMGETLDA  397 (595)
T ss_dssp             GGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEEEEETTTTSTTC
T ss_pred             ccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-cccccceeccceEeCC
Confidence             1122233333479999999987 89999999999999998751        122222  222 233      6788899


Q ss_pred             CCCcEEEEeCCC-CeE-----------EEEEeCC
Q psy14258        409 MANNLYWTDAGI-GTI-----------NVAKISD  430 (440)
Q Consensus       409 ~~~~lYwtd~~~-~~I-----------~~~~~~g  430 (440)
                      .++.||.++..+ +++           ..+++.|
T Consensus       398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~  431 (595)
T 1fwx_A          398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG  431 (595)
T ss_dssp             CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             CCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence            999999999887 787           8888887

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.93  E-value=5.7e-08  Score=92.92  Aligned_cols=191  Identities=9%  Similarity=-0.017  Sum_probs=123.1

Q ss_pred             EEEEEeeecccEEEEEE------------cCCCCceeEEeCCCCCcceeeccccccceeec-----cccccce-eeeec-
Q psy14258         83 AIYFCTHYMEHCMIAID------------LNLSKPRGIALDPTSGYMFFTKWGATRPMLER-----SLLDGTE-RFPMV-  143 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d------------~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~p~~-avD~~-  143 (440)
                      +..|++++ ++.+|.+.            ...++|++++++......       ..+.+..     .--+|.| .+... 
T Consensus        52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-------~~l~~~g~~~~~~~f~PhGi~~~~d~  123 (355)
T 3sre_A           52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-------SELEIIGNTLDISSFNPHGISTFIDD  123 (355)
T ss_dssp             CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCE-------EECEEECSSCCGGGCCEEEEEEEECT
T ss_pred             cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-------EEEEccCCCCCcCceeeeeeEEEECC
Confidence            56666665 46777775            245677777765322111       1111211     2348999 88663 


Q ss_pred             --CCcEEEe------ceE--EEEecCCceEEEEEc---CCCCCceEEEEcCCCCeEEEEEcC---------------CCC
Q psy14258        144 --THKIVYP------EAI--YFCTHYMEHCMIAID---LNLSKPRGIALDPTSGYMFFTKWG---------------ATR  195 (440)
Q Consensus       144 --~~~lY~~------~~I--~~~~~dg~~~~~~~~---~~~~~P~~iavd~~~g~lywtd~~---------------~~~  195 (440)
                        ...||++      .+|  ++.+.++...+.+..   ..+..|.++++|+ .|.+|+++..               ...
T Consensus       124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~  202 (355)
T 3sre_A          124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW  202 (355)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred             CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence              2258888      344  445555554433322   3568899999999 6888888641               112


Q ss_pred             CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC----cEEEecCCccCceeeeeEec-
Q psy14258        196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD----RKTIRKGFPVQNLYDITVFE-  270 (440)
Q Consensus       196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~----~~~i~~~~~~~~p~gl~~~~-  270 (440)
                      ++|+|.+.+  . ..++..++..||||++++.+++||++|...++|++.++++..    ++.+ .-  -..|-|++++. 
T Consensus       203 g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~--~g~PDGi~vD~e  276 (355)
T 3sre_A          203 SFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF--DTLVDNISVDPV  276 (355)
T ss_dssp             EEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC--SSEEEEEEECTT
T ss_pred             cEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC--CCCCceEEEeCC
Confidence            578888873  2 334456788999999999999999999999999999986422    2233 21  35799999995 


Q ss_pred             -CEEEEEe-cCCCeEEEEec
Q psy14258        271 -NNLFVTS-WRNQSIIRVNK  288 (440)
Q Consensus       271 -~~ly~td-~~~~~i~~~~~  288 (440)
                       +.||++. |...+|.+.++
T Consensus       277 ~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          277 TGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             TCCEEEEEESCHHHHHSCCT
T ss_pred             CCcEEEEecCCceEEEEECC
Confidence             5898865 55566665554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.91  E-value=3.3e-07  Score=91.07  Aligned_cols=243  Identities=7%  Similarity=-0.017  Sum_probs=146.2

Q ss_pred             ecccceEEEEEeeeccc-EEEEEEcCCCCceeEEeCCCCC-cceeeccccccceee----ccccccce-eeeec---CCc
Q psy14258         77 LTFAQEAIYFCTHYMEH-CMIAIDLNLSKPRGIALDPTSG-YMFFTKWGATRPMLE----RSLLDGTE-RFPMV---THK  146 (440)
Q Consensus        77 ~~~~~~~~~i~~d~~~~-~ly~~d~~~~~I~~~~~~~~~~-~~~~~~~~~~~v~~~----~~~~~p~~-avD~~---~~~  146 (440)
                      .+..  |++|++.+... +||+++.. ++|+.+..++... +.+.   ..+.+...    .+...+-+ |+++.   ++.
T Consensus        12 gL~~--P~~~a~~pdG~~rl~V~er~-G~i~~~~~~g~~~~~~~~---~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~   85 (463)
T 2wg3_C           12 GLRQ--PVGALHSGDGSQRLFILEKE-GYVKILTPEGEIFKEPYL---DIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK   85 (463)
T ss_dssp             EESS--EEEEECCSSSSCCEEEEETT-TEEEEECTTSCBCSSCSE---ECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE
T ss_pred             CCCC--ceEEEECCCCCeEEEEEeCC-ceEEEEeCCCCeeeeeec---CCcceeccCccccCCCcceeeEeCCCCcCCCE
Confidence            3566  99999999874 79999975 7787765444321 1110   11111111    11356778 99875   678


Q ss_pred             EEEe-c---------------eEEEEecCC--------ceEEEEEc----CCCCCceEEEEcCCCCeEEEEEcCC-----
Q psy14258        147 IVYP-E---------------AIYFCTHYM--------EHCMIAID----LNLSKPRGIALDPTSGYMFFTKWGA-----  193 (440)
Q Consensus       147 lY~~-~---------------~I~~~~~dg--------~~~~~~~~----~~~~~P~~iavd~~~g~lywtd~~~-----  193 (440)
                      ||++ .               +|.+..++.        ...++|+.    ........|+++| .|+||++--..     
T Consensus        86 lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~  164 (463)
T 2wg3_C           86 LYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLD  164 (463)
T ss_dssp             EEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHH
T ss_pred             EEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCC
Confidence            9988 1               677777642        12344443    2346678999999 69999994321     


Q ss_pred             ----------CCCcEEEEeCCCCC-------------------ceeEEecCccCceEEEEeCCCC------EEEEEeC-C
Q psy14258        194 ----------TRPMLERSLLDGTE-------------------RFPMVTHKIVYPYGVTVDFPTK------HVYWVDT-Y  237 (440)
Q Consensus       194 ----------~~~~I~r~~~dG~~-------------------~~~l~~~~~~~P~gl~vD~~~~------~ly~~d~-~  237 (440)
                                ..++|.|++.||+.                   +.++....+..|.||++|+.++      ++|.+|. +
T Consensus       165 ~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G  244 (463)
T 2wg3_C          165 DMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNG  244 (463)
T ss_dssp             HHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC--
T ss_pred             ccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCC
Confidence                      13689999999951                   3468888899999999998754      6787885 2


Q ss_pred             C----CcEEEEEccCCCc---EEEec-CC-ccCceeeeeEecC--------EEEEEecCCCeEEEEeccCCC-c-e-EEE
Q psy14258        238 L----DFIDRINYDGTDR---KTIRK-GF-PVQNLYDITVFEN--------NLFVTSWRNQSIIRVNKFNSD-D-Y-ETI  297 (440)
Q Consensus       238 ~----~~i~~~~~dG~~~---~~i~~-~~-~~~~p~gl~~~~~--------~ly~td~~~~~i~~~~~~~g~-~-~-~~~  297 (440)
                      .    ..|..+. .|.+.   .-+.. .. .-..|.|++++.+        .++++++. ++|+++....+. . . +.+
T Consensus       245 ~~~~~~ei~~i~-~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~  322 (463)
T 2wg3_C          245 KNRSSARILQII-KGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQWQEKPL  322 (463)
T ss_dssp             ----CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----CCEEEEE
T ss_pred             CCCCCCeEeeec-cCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCceeeEEEe
Confidence            1    2344432 23211   11111 10 0136788888654        37889986 778888654332 1 1 122


Q ss_pred             -ec---------CCCCeEEEEeccCCCCCCCCCceeEEeecC-------CccEEEEEE
Q psy14258        298 -AN---------FSRPFAIHIYHRQKQPDALKPSTFLLYAKG-------KPAIIKGLT  338 (440)
Q Consensus       298 -~~---------~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~-------~~~~I~~i~  338 (440)
                       ..         ..+|.++.+.          |++.||+++.       ..++|+||.
T Consensus       323 ~~g~~~~~~~~~~~r~~~v~~~----------pdG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          323 CLGTSGSCRGYFSGHILGFGED----------ELGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             CEEETTSSCSCCCSEEEEEEEC----------TTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             ecCCcccccccccCcceEEEEC----------CCCCEEEEeccCCcccCCCCcEEEec
Confidence             11         1245555444          6788888875       358999997

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.85  E-value=3.3e-06  Score=78.17  Aligned_cols=206  Identities=12%  Similarity=0.029  Sum_probs=130.9

Q ss_pred             ceEEEEec-CCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCC
Q psy14258        151 EAIYFCTH-YMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK  229 (440)
Q Consensus       151 ~~I~~~~~-dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~  229 (440)
                      ++|...+. +|+..-.+-......|.+++++| +|.+|++. .   ..|...+.+|.....+-...-..+.+..+. .++
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs~-~---~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~-~dG   88 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILFSY-S---KGAKMITRDGRELWNIAAPAGCEMQTARIL-PDG   88 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEEEC-B---SEEEEECTTSCEEEEEECCTTCEEEEEEEC-TTS
T ss_pred             CEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEEeC-C---CCEEEECCCCCEEEEEcCCCCccccccEEC-CCC
Confidence            56677777 66554444332224689999999 68888853 2   489999998865544432111234566665 567


Q ss_pred             EEEEEeCC-CCcEEEEEccCCCcEEEecCC----ccCceeeeeEec-CEEEEEecCCCeEEEEeccCCCceEEEecCCCC
Q psy14258        230 HVYWVDTY-LDFIDRINYDGTDRKTIRKGF----PVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRP  303 (440)
Q Consensus       230 ~ly~~d~~-~~~i~~~~~dG~~~~~i~~~~----~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p  303 (440)
                      ++++++.. .+++..++.+|..+..+....    ....|.++++.. +.+++++..++.|..+++. |+..-.+.....|
T Consensus        89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~  167 (276)
T 3no2_A           89 NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTP  167 (276)
T ss_dssp             CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCC
T ss_pred             CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCc
Confidence            77888876 778999998888765554211    123466677654 4788899889999999986 7765555444456


Q ss_pred             eEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcC-CCCCCceee---eeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258        304 FAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFK-RDGTTEQAI---MPITDLKRPSVIDYHEKEEYIYYAEL  375 (440)
Q Consensus       304 ~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~-~~~~~~~~~---~~~~~~~~p~~l~~d~~~~~vy~~d~  375 (440)
                      .++.+.          +++.+++++...++|..++.+ +. ..-...   ++-..+..|.+++..+. +.+|+++.
T Consensus       168 ~~~~~~----------~~g~~~v~~~~~~~v~~~d~~tG~-~~w~~~~~~~~~~~l~~~~~~~~~~~-G~i~v~~~  231 (276)
T 3no2_A          168 FSSAFL----------DNGDCLVACGDAHCFVQLNLESNR-IVRRVNANDIEGVQLFFVAQLFPLQN-GGLYICNW  231 (276)
T ss_dssp             CEEEEC----------TTSCEEEECBTTSEEEEECTTTCC-EEEEEEGGGSBSCCCSEEEEEEECTT-SCEEEEEE
T ss_pred             cceeEc----------CCCCEEEEeCCCCeEEEEeCcCCc-EEEEecCCCCCCccccccccceEcCC-CCEEEEec
Confidence            665544          355566666656788888877 44 100000   00012345788888875 55889984

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.83  E-value=3.2e-06  Score=81.63  Aligned_cols=287  Identities=6%  Similarity=-0.118  Sum_probs=160.7

Q ss_pred             eeEEEEeecccc-eeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcC---------CCCceeEEeCCCCCc
Q psy14258         47 KTHLYETIEAFW-EECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLN---------LSKPRGIALDPTSGY  116 (440)
Q Consensus        47 ~~ll~s~~~~~~-~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~---------~~~I~~~~~~~~~~~  116 (440)
                      ..+++++...+. .+.|..++.......-.++.... +. +++++.+++||.++..         .+.|..++..  ..+
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~--t~~  120 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV--TLL  120 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCC
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCe
Confidence            356677654211 25699999887766534443332 64 9999999999999852         2344444333  222


Q ss_pred             ceeeccccccceeec-----cccccce-eeeecCCcEEEe-----ceEEEEecCCceEEEEEcCC---CCCceE----EE
Q psy14258        117 MFFTKWGATRPMLER-----SLLDGTE-RFPMVTHKIVYP-----EAIYFCTHYMEHCMIAIDLN---LSKPRG----IA  178 (440)
Q Consensus       117 ~~~~~~~~~~v~~~~-----~~~~p~~-avD~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~---~~~P~~----ia  178 (440)
                      .+      ..+.+..     ....|.+ ++++.++.||++     +.|.+.++.......-+...   ...|.+    ++
T Consensus       121 v~------~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~  194 (386)
T 3sjl_D          121 PT------ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  194 (386)
T ss_dssp             EE------EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             EE------EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence            11      1111111     1347999 999999999998     46889888765543222211   112333    24


Q ss_pred             EcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCce--EEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec
Q psy14258        179 LDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPY--GVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK  256 (440)
Q Consensus       179 vd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~--gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~  256 (440)
                      +.+ .|.+.+.+.+.. +++....      ..++. ....|.  ..+++...++++|+.. .+.+..++..+..++.+..
T Consensus       195 ~~~-DG~~~~v~~~~~-g~v~~~~------~~~~~-~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~  264 (386)
T 3sjl_D          195 HCR-DGSLAKVAFGTE-GTPEITH------TEVFH-PEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPA  264 (386)
T ss_dssp             EET-TSCEEEEECCSS-SCCEEEE------CCCCS-CTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCC
T ss_pred             ECC-CCCEEEEECCCC-CeEEEee------cceec-cccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecc
Confidence            444 344444443321 2321111      01111 011122  1356666788877654 5789999988776554322


Q ss_pred             CC-------------ccCceeeeeEecCEEEEEec---------CCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCC
Q psy14258        257 GF-------------PVQNLYDITVFENNLFVTSW---------RNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQ  314 (440)
Q Consensus       257 ~~-------------~~~~p~gl~~~~~~ly~td~---------~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~q  314 (440)
                      -.             .-..+.++.-.++++|++..         ..+.|+.+|..+++....+.-...|.++.+..    
T Consensus       265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~----  340 (386)
T 3sjl_D          265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ----  340 (386)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECS----
T ss_pred             eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECC----
Confidence            00             01123334334569999863         23679999998887776554334577777762    


Q ss_pred             CCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc
Q psy14258        315 PDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE  365 (440)
Q Consensus       315 p~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~  365 (440)
                          +.+..||.++...+.|..++....    .....+.....|..|.+.+
T Consensus       341 ----D~~~~ly~tn~~~~~VsViD~~t~----k~~~~i~~~~~p~~l~~s~  383 (386)
T 3sjl_D          341 ----DEKPLLYALSTGDKTLYIHDAESG----EELRSVNQLGHGPQVITTA  383 (386)
T ss_dssp             ----SSSCEEEEEETTTTEEEEEETTTC----CEEEEECCCCSSCCEEEEC
T ss_pred             ----CCCeEEEEEcCCCCeEEEEECCCC----cEEEEecCCCCCceeEECC
Confidence                112467777766678888887554    3444555555666665554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.83  E-value=5.6e-06  Score=87.26  Aligned_cols=325  Identities=9%  Similarity=0.006  Sum_probs=190.5

Q ss_pred             EEEEEeeecccEEEEEEcCCC-----CceeEEeCCCCCcceeeccccc----cceee----------ccccccce-eeee
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLS-----KPRGIALDPTSGYMFFTKWGAT----RPMLE----------RSLLDGTE-RFPM  142 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~-----~I~~~~~~~~~~~~~~~~~~~~----~v~~~----------~~~~~p~~-avD~  142 (440)
                      +..+++.+.+++|+++....+     .|+..++++.....+.......    .+...          .+...+.. ++.+
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence            788999999899988876333     6777776654322210000000    00000          00012567 8888


Q ss_pred             cCCcEEEe--ceEEEEecCCc---eEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc-
Q psy14258        143 VTHKIVYP--EAIYFCTHYME---HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI-  216 (440)
Q Consensus       143 ~~~~lY~~--~~I~~~~~dg~---~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~-  216 (440)
                      .++.|+++  +.|.+.++++.   ..+.+.. ....+..+++.|...+|.++..    ..|+..++++.....+..... 
T Consensus       119 Dg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~----~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          119 DAQRLLFPLGGELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG----RNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             TSSEEEEEETTEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET----TEEEEEETTTTEEEECCCCCCS
T ss_pred             CCCEEEEEeCCcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEeC----CcEEEEecCCCCEEEeccCCcc
Confidence            88888888  78999999876   5444332 3356889999997777887763    379999998754443332211 


Q ss_pred             ---------------cCceEEEEeCCCCEEEEEeCCCC--------------------------------cEEEEEccC-
Q psy14258        217 ---------------VYPYGVTVDFPTKHVYWVDTYLD--------------------------------FIDRINYDG-  248 (440)
Q Consensus       217 ---------------~~P~gl~vD~~~~~ly~~d~~~~--------------------------------~i~~~~~dG-  248 (440)
                                     ..+.++++.+.+.+|+++.....                                .|..+++++ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence                           11477999999999988743221                                677777776 


Q ss_pred             CCcEEEecC-CccCceeeeeE-ecCEEEEEec----CCCeEEEEeccCCCceEEEecCCC-----CeEEEEeccCCCCCC
Q psy14258        249 TDRKTIRKG-FPVQNLYDITV-FENNLFVTSW----RNQSIIRVNKFNSDDYETIANFSR-----PFAIHIYHRQKQPDA  317 (440)
Q Consensus       249 ~~~~~i~~~-~~~~~p~gl~~-~~~~ly~td~----~~~~i~~~~~~~g~~~~~~~~~~~-----p~~~~v~~~~~qp~~  317 (440)
                      .....+... .....+..+++ ++..|+++..    ....|+.++..+++...++.....     ...+.+.        
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s--------  345 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL--------  345 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC--------
T ss_pred             CceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC--------
Confidence            655554322 11123344554 3347776643    245688888877765554432111     0122211        


Q ss_pred             CCCceeEEeecCCc--cEEEEEEcCCCCCCceeeeeecCC-CCceEE-EEEcCCCEEEEEECC----CCeEEEEecCCCC
Q psy14258        318 LKPSTFLLYAKGKP--AIIKGLTFKRDGTTEQAIMPITDL-KRPSVI-DYHEKEEYIYYAELT----SYVIERRKMFGRG  389 (440)
Q Consensus       318 ~~~~~~l~~~~~~~--~~I~~i~~~~~~~~~~~~~~~~~~-~~p~~l-~~d~~~~~vy~~d~~----~~~I~r~~~~g~~  389 (440)
                        |++-++++....  ..|+.+++++.      ...+... .....+ ++++.++.||++...    ...|++++.+|..
T Consensus       346 --pdg~~~~~~~~~g~~~l~~~~~~~~------~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~  417 (741)
T 2ecf_A          346 --DDGSILWSSERTGFQHLYRIDSKGK------AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ  417 (741)
T ss_dssp             --TTSCEEEEECTTSSCEEEEECSSSC------EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC
T ss_pred             --CCCeEEEEecCCCccEEEEEcCCCC------eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC
Confidence              333244443332  35666665433      2222221 223355 599999999888654    3468999888765


Q ss_pred             eEEEEECCCCCeeeEEEecCCCcEEEEeCCC---CeEEEEEeCC
Q psy14258        390 KEVVIDTGIYNVEGMAVDWMANNLYWTDAGI---GTINVAKISD  430 (440)
Q Consensus       390 ~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~---~~I~~~~~~g  430 (440)
                      .+.+..  ......+++.+.++.|.++-...   ..+.+.+++|
T Consensus       418 ~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          418 PQRLSK--APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             CEECCC--SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             eeeccc--CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence            554432  35567889998888887764332   4577777777

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.78  E-value=0.00025  Score=71.97  Aligned_cols=310  Identities=9%  Similarity=0.007  Sum_probs=185.7

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.++++.+..+.|.-... .+.|...+.++..+..           +......+.+ ++.+.+..|..+   +.|.+.+
T Consensus       223 ~v~~~~~s~dg~~l~~~~~-d~~i~~w~~~~~~~~~-----------~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~  290 (577)
T 2ymu_A          223 SVRGVAFSPDGQTIASASD-DKTVKLWNRNGQLLQT-----------LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN  290 (577)
T ss_dssp             CEEEEEECTTSSCEEEEET-TSCEEEECTTSCEEEE-----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeC-CCEEEEEeCCCCEEEE-----------EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence            3889999988776665544 3555444333221111           2222334556 777666655544   6788888


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY  237 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~  237 (440)
                      .++.....+. .......++++.|....|.-.. ..  +.|...++++.....+. ..-..+.++++.+.+..|.... .
T Consensus       291 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~-~d--~~i~~w~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~-~  364 (577)
T 2ymu_A          291 RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASAS-DD--KTVKLWNRNGQHLQTLT-GHSSSVWGVAFSPDGQTIASAS-D  364 (577)
T ss_dssp             TTSCEEEEEC-CCSSCEEEEEECTTSSEEEEEE-TT--SCEEEEETTSCEEEEEC-CCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             CCCcEEEEEe-cCCCCeEEEEECCCCCEEEEEe-CC--CeEEEEeCCCCeeEEEe-CCCCCEEEEEECCCCCEEEEEe-C
Confidence            8887666553 3446788999999544444433 32  57888888876554432 2234567899987777776654 4


Q ss_pred             CCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCC
Q psy14258        238 LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQP  315 (440)
Q Consensus       238 ~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp  315 (440)
                      .+.|...+.++.....+...  -....++++..+ ....+-...+.|...+. +++....+..-. ...++.+.      
T Consensus       365 dg~v~~~~~~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s------  435 (577)
T 2ymu_A          365 DKTVKLWNRNGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS------  435 (577)
T ss_dssp             TSEEEEEETTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC------
T ss_pred             CCEEEEEcCCCCEEEEecCC--CCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC------
Confidence            56777777777655554432  234667777654 33333334566666664 454444443322 33444433      


Q ss_pred             CCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE
Q psy14258        316 DALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI  394 (440)
Q Consensus       316 ~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~  394 (440)
                          |++.++++-+..+.|+..++++.    . ...+.+ -....+++|.+.+..|..+ ...+.|+.-+.+|.....+ 
T Consensus       436 ----~d~~~l~~~~~d~~v~~w~~~~~----~-~~~~~~~~~~v~~~~~spd~~~las~-~~d~~i~iw~~~~~~~~~~-  504 (577)
T 2ymu_A          436 ----PDDQTIASASDDKTVKLWNRNGQ----L-LQTLTGHSSSVRGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTL-  504 (577)
T ss_dssp             ----TTSSEEEEEETTSEEEEEETTSC----E-EEEEECCSSCEEEEEECTTSCEEEEE-ETTSEEEEEETTSCEEEEE-
T ss_pred             ----CCCCEEEEEcCCCEEEEEECCCC----E-EEEEcCCCCCEEEEEEcCCCCEEEEE-eCCCEEEEEcCCCCEEEEE-
Confidence                33223333333477877776554    2 222222 2356789999987765444 4678888888877544444 


Q ss_pred             ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        395 DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       395 ~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ...-..+..|++.+.++.|.-+. ..+.|.+.+.+|
T Consensus       505 ~~h~~~v~~l~~s~dg~~l~s~~-~dg~v~lwd~~~  539 (577)
T 2ymu_A          505 TGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNG  539 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTS
T ss_pred             eCCCCCEEEEEEcCCCCEEEEEE-CcCEEEEEeCCC
Confidence            33446789999998777666554 457899998888

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.77  E-value=2e-07  Score=93.94  Aligned_cols=290  Identities=7%  Similarity=-0.069  Sum_probs=176.4

Q ss_pred             cccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-ee-e-ecCCcEEEe-----------------
Q psy14258         91 MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RF-P-MVTHKIVYP-----------------  150 (440)
Q Consensus        91 ~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-av-D-~~~~~lY~~-----------------  150 (440)
                      .+++||++|..+++|.+++++.-....+        + -......|+| ++ . +.++.+|++                 
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~i--------i-~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAI--------L-EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEE--------E-ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeE--------E-eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence            6789999999999999988764332211        1 1134467999 97 4 788889888                 


Q ss_pred             ----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        151 ----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       151 ----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                          +.+.+.+.+.....--+..+ .+|.+++++|..+++|+|...++.... ...+.-..+..+.-  +.+|...+...
T Consensus       171 ~~~~~~vtvID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~-i~~~~~~~~d~v~V--~~~~~~~~~v~  246 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMT-LPEMTAAEMDHIVV--FNIAEIEKAIA  246 (595)
T ss_dssp             GGEEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSS-HHHHTCCSEEEEEE--EEHHHHHHHHH
T ss_pred             cccCceEEEEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcc-hhhccccccceEEE--eeccceeEecc
Confidence                15777777754432222212 379999999999999999977641100 01111112121211  11222222222


Q ss_pred             CCCEEEEEeCCCCcEEEEEccC---CC-cEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCc-------
Q psy14258        227 PTKHVYWVDTYLDFIDRINYDG---TD-RKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDD-------  293 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~dG---~~-~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~-------  293 (440)
                      .++++|+     +.+..+|...   .. ...+..+   ..|.|+.+..|  ++|+++...+.|..++..+.+.       
T Consensus       247 ~Gk~~~i-----~~V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~  318 (595)
T 1fwx_A          247 AGDYQEL-----NGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD  318 (595)
T ss_dssp             HTCSEEE-----TTEEEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC
T ss_pred             CCCeeEE-----CcEEEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC
Confidence            3455664     4477777643   33 3444433   47999998754  9999999999999998764321       


Q ss_pred             ----e-EEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC-----C-CCceeeeeecCCCCc----
Q psy14258        294 ----Y-ETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD-----G-TTEQAIMPITDLKRP----  358 (440)
Q Consensus       294 ----~-~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~-----~-~~~~~~~~~~~~~~p----  358 (440)
                          . ..+.....|.++++.          +++++|++....+.|..++++..     + ....+.-.+...-+|    
T Consensus       319 ~~~~v~~~v~vG~gP~h~aF~----------~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~  388 (595)
T 1fwx_A          319 PRSAVVAEPELGLGPLHTAFD----------GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK  388 (595)
T ss_dssp             GGGGEEECCBCCSCEEEEEEC----------TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred             cccceEEEcCCCCCcceEEEC----------CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence                1 112223368888766          56788888777789999998761     0 111122122211234    


Q ss_pred             --eEEEEEcCCCEEEEEECCC-CeE-----------EEEecCCCCeEEEEE-CCCCCeeeEEEecCCC
Q psy14258        359 --SVIDYHEKEEYIYYAELTS-YVI-----------ERRKMFGRGKEVVID-TGIYNVEGMAVDWMAN  411 (440)
Q Consensus       359 --~~l~~d~~~~~vy~~d~~~-~~I-----------~r~~~~g~~~~~~~~-~~~~~~~glAvD~~~~  411 (440)
                        .|+...+++++||.++..+ .++           ..++..|...+.+.. .-...|...+++..+.
T Consensus       389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~~  456 (595)
T 1fwx_A          389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSI  456 (595)
T ss_dssp             ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTTT
T ss_pred             eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEccHHH
Confidence              4566789999999999876 565           566666655544432 1247899999987553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.74  E-value=0.00016  Score=67.43  Aligned_cols=312  Identities=8%  Similarity=-0.087  Sum_probs=180.4

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe--ceEEEEecC
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHY  159 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~d  159 (440)
                      +.++++.+.++.+.++.... .+...    .....      ...+.....-..+.. ++.+.++.|+.+  +.|.+.+++
T Consensus        12 v~~~~~s~dg~~~~~~~~~~-~~~~~----~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~   80 (337)
T 1gxr_A           12 AYSFHVTADGQMQPVPFPPD-ALIGP----GIPRH------ARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS   80 (337)
T ss_dssp             CCEEEECSSSCEEECCCCTT-SSSST----TCCSE------EEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT
T ss_pred             eeEEEECCCCCEEEeecCCC-cEecc----ccCCc------cccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC
Confidence            67788988877666555432 22110    00000      011111223334555 676666655554  788888876


Q ss_pred             CceE----EEEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE--EecCccCceEEEEeCCCCEEE
Q psy14258        160 MEHC----MIAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM--VTHKIVYPYGVTVDFPTKHVY  232 (440)
Q Consensus       160 g~~~----~~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l--~~~~~~~P~gl~vD~~~~~ly  232 (440)
                      ....    ..+-. ........+++.|...+|+.....   +.|...+++.......  ..........+++.+.+..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  157 (337)
T 1gxr_A           81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF  157 (337)
T ss_dssp             STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred             CCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC---CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEE
Confidence            5321    11111 234568899999965556655544   5888888876653222  222334567899987777777


Q ss_pred             EEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEecc
Q psy14258        233 WVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHR  311 (440)
Q Consensus       233 ~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~  311 (440)
                      .+. ..+.|...++........... .......+++..+ ..+++-...+.|...+..+++....+.....+..+.+.  
T Consensus       158 ~~~-~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s--  233 (337)
T 1gxr_A          158 SCC-SDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC--  233 (337)
T ss_dssp             EEE-TTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC--
T ss_pred             EEe-CCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEEC--
Confidence            665 456788888765543333332 1345677777644 34444445788888887766554444332234444433  


Q ss_pred             CCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCe
Q psy14258        312 QKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK  390 (440)
Q Consensus       312 ~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~  390 (440)
                              |+ .+|+++. ..+.|+.+++...    ...........+..+++.+.++.++.+. ..+.|...++.....
T Consensus       234 --------~~~~~l~~~~-~~~~i~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          234 --------PTGEWLAVGM-ESSNVEVLHVNKP----DKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS  299 (337)
T ss_dssp             --------TTSSEEEEEE-TTSCEEEEETTSS----CEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred             --------CCCCEEEEEc-CCCcEEEEECCCC----CeEEEcCCccceeEEEECCCCCEEEEec-CCCcEEEEECCCCeE
Confidence                    23 3444443 3478888888765    2222222234567999999887665444 678899999876544


Q ss_pred             EEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        391 EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       391 ~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      .... ..-..+..+++.+.++.|+.+. ..+.|.+.++
T Consensus       300 ~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~  335 (337)
T 1gxr_A          300 IFQS-KESSSVLSCDISVDDKYIVTGS-GDKKATVYEV  335 (337)
T ss_dssp             EEEE-ECSSCEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred             EEEe-cCCCcEEEEEECCCCCEEEEec-CCCeEEEEEE
Confidence            3332 2446788999988776665554 4667877765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.70  E-value=3e-05  Score=74.39  Aligned_cols=245  Identities=12%  Similarity=0.107  Sum_probs=146.6

Q ss_pred             CceEEEEcCCCCeEEEEEcCCC---CCcEEEEeCCC------CCcee--EE-----ecCccCceEEEEeCCCCEEEEEeC
Q psy14258        173 KPRGIALDPTSGYMFFTKWGAT---RPMLERSLLDG------TERFP--MV-----THKIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       173 ~P~~iavd~~~g~lywtd~~~~---~~~I~r~~~dG------~~~~~--l~-----~~~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      -|.||++|..+|+||.|-..-.   ..++-....+.      .+...  -.     ...+..+.++.+| ..++|++.|.
T Consensus        27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD-~~~rLWVLDt  105 (381)
T 3q6k_A           27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVID-DCRRLWVVDI  105 (381)
T ss_dssp             CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEEC-TTCEEEEEEC
T ss_pred             ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEc-CCCcEEEEeC
Confidence            4667777634677777653210   13444444321      11111  11     1246678899999 6899999997


Q ss_pred             CC---------------CcEEEEEccCC--Cc-EEEecC-C---ccCceeeeeEe---------cCEEEEEecCCCeEEE
Q psy14258        237 YL---------------DFIDRINYDGT--DR-KTIRKG-F---PVQNLYDITVF---------ENNLFVTSWRNQSIIR  285 (440)
Q Consensus       237 ~~---------------~~i~~~~~dG~--~~-~~i~~~-~---~~~~p~gl~~~---------~~~ly~td~~~~~i~~  285 (440)
                      +.               -+|..+|+...  .+ +.+.-. .   .-.....|+++         +.++|+||.....|..
T Consensus       106 G~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIV  185 (381)
T 3q6k_A          106 GSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFI  185 (381)
T ss_dssp             SSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEE
T ss_pred             CCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEE
Confidence            62               16777887654  22 222211 1   12345678888         4599999998899999


Q ss_pred             EeccCCCceEEEecCCCCe--EEEEecc-C-----------CCCCCCCCceeEEeecCCccEEEEEEc---CCCCCCcee
Q psy14258        286 VNKFNSDDYETIANFSRPF--AIHIYHR-Q-----------KQPDALKPSTFLLYAKGKPAIIKGLTF---KRDGTTEQA  348 (440)
Q Consensus       286 ~~~~~g~~~~~~~~~~~p~--~~~v~~~-~-----------~qp~~~~~~~~l~~~~~~~~~I~~i~~---~~~~~~~~~  348 (440)
                      ++..+++...+....-.|.  +....+. .           .-|...+....|||.......+++++.   ........+
T Consensus       186 ydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v  265 (381)
T 3q6k_A          186 YDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP  265 (381)
T ss_dssp             EETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC
T ss_pred             EECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce
Confidence            9998888877664322221  1111110 0           011111124688888765567888873   222111111


Q ss_pred             eeeec-C-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCC-----CCeEEEEE-CCCCCeeeEEEecCCCcEEEEeCC
Q psy14258        349 IMPIT-D-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG-----RGKEVVID-TGIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       349 ~~~~~-~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g-----~~~~~~~~-~~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                      ..... + .....++++|+.+|.||+++...+.|.+.+.++     .+.++++. ..+..|.+|++|. .++||++...
T Consensus       266 ~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~g~Lwv~sn~  343 (381)
T 3q6k_A          266 ELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-KGGLWFMSNG  343 (381)
T ss_dssp             EEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-TSCEEEEECS
T ss_pred             EEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-CCeEEEEECc
Confidence            11111 1 123457889977899999999999999999987     34456554 5678899999995 5689998643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.70  E-value=8.4e-06  Score=75.35  Aligned_cols=227  Identities=10%  Similarity=-0.007  Sum_probs=135.9

Q ss_pred             CeEEEEEcCCCCCcEEEEeC-CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCc
Q psy14258        184 GYMFFTKWGATRPMLERSLL-DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQN  262 (440)
Q Consensus       184 g~lywtd~~~~~~~I~r~~~-dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~  262 (440)
                      +.+++++...  .+|...+. +|.....+-......|+.+++++ ++++|++  ..+.|..++.+|..+..+..+. -.+
T Consensus         5 ~~~lv~~~~~--~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs--~~~~V~~~d~~G~~~W~~~~~~-~~~   78 (276)
T 3no2_A            5 QHLLVGGSGW--NKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILFS--YSKGAKMITRDGRELWNIAAPA-GCE   78 (276)
T ss_dssp             CEEEEECTTC--SEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEEE--CBSEEEEECTTSCEEEEEECCT-TCE
T ss_pred             CcEEEeeCCC--CEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEEe--CCCCEEEECCCCCEEEEEcCCC-Ccc
Confidence            3444444433  35555555 44433333222123578888885 4566664  3567999998887665554321 124


Q ss_pred             eeeeeEec-CEEEEEecC-CCeEEEEeccCCCceEEEe-cCCCCeEEEEeccCCCCCCC--CCceeEEeecCCccEEEEE
Q psy14258        263 LYDITVFE-NNLFVTSWR-NQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDAL--KPSTFLLYAKGKPAIIKGL  337 (440)
Q Consensus       263 p~gl~~~~-~~ly~td~~-~~~i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~~--~~~~~l~~~~~~~~~I~~i  337 (440)
                      +.++++.. +.+++++.. +++|+.+++ +|+....+. ....      ..+..+|...  .+++-+++++...++|..+
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~  151 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI------ERPHAQFRQINKNKKGNYLVPLFATSEVREI  151 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC------SSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC------CcccccccCceECCCCCEEEEecCCCEEEEE
Confidence            45566554 488888877 888988887 566544221 1000      0000111111  2455677777777899999


Q ss_pred             EcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC-CCCeEEEEEC-----CCCCeeeEEEecCCC
Q psy14258        338 TFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF-GRGKEVVIDT-----GIYNVEGMAVDWMAN  411 (440)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~-g~~~~~~~~~-----~~~~~~glAvD~~~~  411 (440)
                      +.+|.     .......-..|.++...+. +.+++++...++|+.++++ |.....+...     .+..|.+++++. ++
T Consensus       152 d~~G~-----~~w~~~~~~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G  224 (276)
T 3no2_A          152 APNGQ-----LLNSVKLSGTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NG  224 (276)
T ss_dssp             CTTSC-----EEEEEECSSCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TS
T ss_pred             CCCCC-----EEEEEECCCCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CC
Confidence            98866     2222222246788888775 4588888888899999998 7655555432     244589999996 77


Q ss_pred             cEEEEeC-C---------CCeEEEEEeCC
Q psy14258        412 NLYWTDA-G---------IGTINVAKISD  430 (440)
Q Consensus       412 ~lYwtd~-~---------~~~I~~~~~~g  430 (440)
                      ++|+++. +         ..++..++.+|
T Consensus       225 ~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          225 GLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             CEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             CEEEEeccCccccccccCCceEEEECCCC
Confidence            8999984 2         23455556677

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.68  E-value=1.9e-05  Score=72.09  Aligned_cols=246  Identities=11%  Similarity=0.030  Sum_probs=150.8

Q ss_pred             ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC-CCceeEEecC-ccCceEEEEeCCC
Q psy14258        151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG-TERFPMVTHK-IVYPYGVTVDFPT  228 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG-~~~~~l~~~~-~~~P~gl~vD~~~  228 (440)
                      ..|.+.++++...+.+.. ....+.++++.|...+|+++. .   ..|...++++ .....+.... ...+..+++.+.+
T Consensus        22 ~~i~~~d~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg   96 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQ-TPELFEAPNWSPDGKYLLLNS-E---GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG   96 (297)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSCCEEEEECTTSSEEEEEE-T---TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred             eeEEEEeCCCCceeeecc-CCcceEeeEECCCCCEEEEEc-C---CeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence            467777877766655544 345688999999766677765 2   5899999987 5554443322 2456779999889


Q ss_pred             CEEEEEeCC---CCcEEEEEccCCCcEEEecCCccCceeeeeEec--CEEEEEecCCC--eEEEEeccCCCceEEEecCC
Q psy14258        229 KHVYWVDTY---LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQ--SIIRVNKFNSDDYETIANFS  301 (440)
Q Consensus       229 ~~ly~~d~~---~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~--~i~~~~~~~g~~~~~~~~~~  301 (440)
                      ..|+++...   ...|+.++.++.....+...   ..+..+++..  ..|+++....+  .|+.++..++....+.....
T Consensus        97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  173 (297)
T 2ojh_A           97 ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN---LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG  173 (297)
T ss_dssp             SEEEEEECTTTSSCEEEEEETTCCCCEECCSS---SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred             CEEEEEEeCCCCcceEEEEECCCCceEEeecC---CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence            999888743   46888888877766555432   2356666653  46776654444  56666665443322222222


Q ss_pred             CCeEEEEeccCCCCCCCCCc-eeEEeec--CCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECC-
Q psy14258        302 RPFAIHIYHRQKQPDALKPS-TFLLYAK--GKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELT-  376 (440)
Q Consensus       302 ~p~~~~v~~~~~qp~~~~~~-~~l~~~~--~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~-  376 (440)
                      .+..+.+.          |+ .+|+++.  .....|+.+++++.    .. ..+.. ......+++++.+++|+++... 
T Consensus       174 ~~~~~~~s----------~dg~~l~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          174 RNDGPDYS----------PDGRWIYFNSSRTGQMQIWRVRVDGS----SV-ERITDSAYGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             CEEEEEEC----------TTSSEEEEEECTTSSCEEEEEETTSS----CE-EECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred             ccccceEC----------CCCCEEEEEecCCCCccEEEECCCCC----Cc-EEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence            33344332          23 4455543  22356666665544    11 11211 1234578899999988887643 


Q ss_pred             ---------CCeEEEEecCCCCeEEEEE--CCCCCeeeEEEecCCCcEEEEeCC
Q psy14258        377 ---------SYVIERRKMFGRGKEVVID--TGIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       377 ---------~~~I~r~~~~g~~~~~~~~--~~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                               ...|+..++++.....+..  ..-..+..+++.+.++.|+++...
T Consensus       239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence                     3679999998765544432  233467778888888888887543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.67  E-value=0.00054  Score=69.45  Aligned_cols=305  Identities=9%  Similarity=0.005  Sum_probs=180.8

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|.+.++.|.-.. ..+.|+..+.++.....           +......+.+ ++.+.+..|.-+   +.|.+.+
T Consensus       264 ~v~~v~~~~d~~~l~~~~-~d~~i~~w~~~~~~~~~-----------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~  331 (577)
T 2ymu_A          264 SVNGVAFRPDGQTIASAS-DDKTVKLWNRNGQLLQT-----------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  331 (577)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEETTSCEEEE-----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEe-CCCEEEEEeCCCcEEEE-----------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            388999998766665444 34556554443322111           1222334566 777766655444   6788889


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY  237 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~  237 (440)
                      +++.....+. .....+.++++.|....|......   +.|...+.+|.....+. ..-..+.++++.+.+..|..+. .
T Consensus       332 ~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~d---g~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~-~  405 (577)
T 2ymu_A          332 RNGQHLQTLT-GHSSSVWGVAFSPDGQTIASASDD---KTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASAS-D  405 (577)
T ss_dssp             TTSCEEEEEC-CCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEE-T
T ss_pred             CCCCeeEEEe-CCCCCEEEEEECCCCCEEEEEeCC---CEEEEEcCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEe-C
Confidence            9887766553 344668899999965555444433   57888888776544432 2234578899987777776654 4


Q ss_pred             CCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCC
Q psy14258        238 LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQP  315 (440)
Q Consensus       238 ~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp  315 (440)
                      .+.|...+.++.....+...  -....++++..+ ....+-..++.|...+. +++....+..-. ....+.+.      
T Consensus       406 d~~v~~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s------  476 (577)
T 2ymu_A          406 DKTVKLWNRNGQLLQTLTGH--SSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS------  476 (577)
T ss_dssp             TSEEEEECTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC------
T ss_pred             CCEEEEEeCCCCEEEEecCC--CCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc------
Confidence            56777777777655554432  234567777654 44444445667766664 454444443322 33444433      


Q ss_pred             CCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE
Q psy14258        316 DALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI  394 (440)
Q Consensus       316 ~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~  394 (440)
                          |++.++++-+..+.|+..+.++.     ....+.+ -....+++|.+.+..|.-++ ..+.|+-.+.+|....++ 
T Consensus       477 ----pd~~~las~~~d~~i~iw~~~~~-----~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~dg~v~lwd~~~~~~~~~-  545 (577)
T 2ymu_A          477 ----PDGQTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTL-  545 (577)
T ss_dssp             ----TTSCEEEEEETTSEEEEEETTSC-----EEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTSCEEEEE-
T ss_pred             ----CCCCEEEEEeCCCEEEEEcCCCC-----EEEEEeCCCCCEEEEEEcCCCCEEEEEE-CcCEEEEEeCCCCEEEEE-
Confidence                34334444344478888886654     2222222 33567999999877665444 678888888877544443 


Q ss_pred             ECCCCCeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258        395 DTGIYNVEGMAVDWMANNLYWTDAGIGTINV  425 (440)
Q Consensus       395 ~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~  425 (440)
                      ...-..+.+|++.+.++.|.-+. ..++|.+
T Consensus       546 ~~h~~~v~~~~fs~dg~~l~s~~-~D~~i~~  575 (577)
T 2ymu_A          546 TGHSSSVWGVAFSPDGQTIASAS-SDKTVKL  575 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEE-TTSCEEE
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCCEEEE
Confidence            33456788999988777665433 3344543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.66  E-value=0.00022  Score=66.53  Aligned_cols=273  Identities=6%  Similarity=-0.055  Sum_probs=157.3

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEec
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTH  158 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~  158 (440)
                      +.++++++.++.|+.+.  .+.|...++........     .........-..+.. ++.+.++.|+.+   +.|.+.++
T Consensus        54 v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           54 VCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSP-----VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             CCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSC-----SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             eEEEEEecCCcEEEEcC--CCeEEEEECCCCCceee-----eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            78888988877766665  46676666543221110     000000022334556 777666656655   68999888


Q ss_pred             CCceE--EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC
Q psy14258        159 YMEHC--MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       159 dg~~~--~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      +....  .............+++.|....|+.....   +.|...++........+...-..+..+++++.+..|+.+. 
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  202 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD---GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-  202 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             CCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-
Confidence            87652  22333344567899999965566665544   5788888875543333333345678899987777777665 


Q ss_pred             CCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCC
Q psy14258        237 YLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQ  314 (440)
Q Consensus       237 ~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~q  314 (440)
                      ..+.|...++...........  ...+..+++..+  .|+.. ...+.|...+..+++..........+..+.+.     
T Consensus       203 ~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~-----  274 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPDKYQLHLHESCVLSLKFA-----  274 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSCEEEECCCSSCEEEEEEC-----
T ss_pred             cCCcEEEEECCCCceEeeecC--CCceEEEEECCCCCEEEEE-cCCCcEEEEECCCCCeEEEcCCccceeEEEEC-----
Confidence            567888888765443333322  234567777543  45444 45677887787655433222222233444443     


Q ss_pred             CCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEe
Q psy14258        315 PDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRK  384 (440)
Q Consensus       315 p~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~  384 (440)
                           |++.++++-+..+.|+..++...    ........-..+.++++.+.++.++.+. ..+.|...+
T Consensus       275 -----~~~~~l~~~~~dg~i~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~  334 (337)
T 1gxr_A          275 -----YCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYIVTGS-GDKKATVYE  334 (337)
T ss_dssp             -----TTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSCEEEEEECTTSCEEEEEE-TTSCEEEEE
T ss_pred             -----CCCCEEEEecCCCcEEEEECCCC----eEEEEecCCCcEEEEEECCCCCEEEEec-CCCeEEEEE
Confidence                 23223333334578888887665    2222333344677899999887776555 456665443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.66  E-value=1.8e-05  Score=77.15  Aligned_cols=196  Identities=11%  Similarity=0.012  Sum_probs=120.3

Q ss_pred             ecccEEEEEEcCCCCceeEEeCCCC--Ccceeeccccc-cceeeccccccce-eeeecCCcEEEe----------ceEEE
Q psy14258         90 YMEHCMIAIDLNLSKPRGIALDPTS--GYMFFTKWGAT-RPMLERSLLDGTE-RFPMVTHKIVYP----------EAIYF  155 (440)
Q Consensus        90 ~~~~~ly~~d~~~~~I~~~~~~~~~--~~~~~~~~~~~-~v~~~~~~~~p~~-avD~~~~~lY~~----------~~I~~  155 (440)
                      ..+++||.+...+++|+.++.....  ....  +..++ ++.-..+...|.+ +.-+.+  ||++          +.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~--k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKII--KVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEE--EEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceee--eeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEE
Confidence            6688999999999999988764221  1111  00000 0000124557888 777665  9998          25888


Q ss_pred             EecCCceEEEEEcCC---CCCceEEEEcCCCCeEEEEEcC----------------CCCCcEEEEeCCCCCceeEEec--
Q psy14258        156 CTHYMEHCMIAIDLN---LSKPRGIALDPTSGYMFFTKWG----------------ATRPMLERSLLDGTERFPMVTH--  214 (440)
Q Consensus       156 ~~~dg~~~~~~~~~~---~~~P~~iavd~~~g~lywtd~~----------------~~~~~I~r~~~dG~~~~~l~~~--  214 (440)
                      .+.++.....-...+   ...+.++.+.|....||.++|+                ....+|...+++......-+..  
T Consensus       169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~  248 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE  248 (462)
T ss_dssp             ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred             EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence            887754433222211   1235557778988899999875                0115899999985321111221  


Q ss_pred             CccCceEEEE--eCCCCEEEEEeC-----CCCcEEEEEccCCCcE---EEecCC-----c-----------cCceeeeeE
Q psy14258        215 KIVYPYGVTV--DFPTKHVYWVDT-----YLDFIDRINYDGTDRK---TIRKGF-----P-----------VQNLYDITV  268 (440)
Q Consensus       215 ~~~~P~gl~v--D~~~~~ly~~d~-----~~~~i~~~~~dG~~~~---~i~~~~-----~-----------~~~p~gl~~  268 (440)
                      .-..|..|.+  ++.+..+|++..     ..+.|..+.+++...+   ++....     .           -..|.+|.+
T Consensus       249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence            1235888877  989999999988     8888988777653221   110000     0           134667776


Q ss_pred             ecC--EEEEEecCCCeEEEEecc
Q psy14258        269 FEN--NLFVTSWRNQSIIRVNKF  289 (440)
Q Consensus       269 ~~~--~ly~td~~~~~i~~~~~~  289 (440)
                      ..|  +||+++|..+.|..++..
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEec
Confidence            544  899999888888776653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.64  E-value=8.7e-06  Score=76.86  Aligned_cols=191  Identities=12%  Similarity=0.163  Sum_probs=120.9

Q ss_pred             CCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC---------EEEEEecC--CCeEEEE--eccCCCc
Q psy14258        227 PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN---------NLFVTSWR--NQSIIRV--NKFNSDD  293 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~---------~ly~td~~--~~~i~~~--~~~~g~~  293 (440)
                      ...+ +++-.+.+.+..++++|..+..+..    ..++++.+..+         .+|.++..  +++|..+  +..++. 
T Consensus        39 ~~s~-ii~t~k~~gL~Vydl~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-  112 (355)
T 3amr_A           39 QNSK-LITTNKKSGLVVYSLDGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-  112 (355)
T ss_dssp             GGCE-EEEEETTTEEEEEETTSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-
T ss_pred             CccE-EEEEcCCCCEEEEcCCCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-
Confidence            3344 4433345677888888877766532    24555554332         46899988  7877555  554443 


Q ss_pred             eEEE--------ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcC--CCC-CCceeeeeecCCCCceEEE
Q psy14258        294 YETI--------ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFK--RDG-TTEQAIMPITDLKRPSVID  362 (440)
Q Consensus       294 ~~~~--------~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~--~~~-~~~~~~~~~~~~~~p~~l~  362 (440)
                      ...+        ..+..|+|+.+|+....     .+.|+|+.+.. +.+..+.+.  +.+ ........+.--..|.+++
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~-----g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcv  186 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKT-----GKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMA  186 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTT-----CCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEE
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCC-----CcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcceEE
Confidence            3323        22357899999863221     12467777664 777775553  221 1122223333335799999


Q ss_pred             EEcCCCEEEEEECCCCeEEEEecC--CCC-eEEEEEC---CCC-CeeeEEEecCC---CcEEEEeCCCCeEEEEEeCC
Q psy14258        363 YHEKEEYIYYAELTSYVIERRKMF--GRG-KEVVIDT---GIY-NVEGMAVDWMA---NNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       363 ~d~~~~~vy~~d~~~~~I~r~~~~--g~~-~~~~~~~---~~~-~~~glAvD~~~---~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +|+..++||+++...+ |++++.+  ++. .+.+...   ++. .++|||+....   +.|+.++.+.++..+++..+
T Consensus       187 vDd~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          187 ADDEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EETTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EcCCCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            9999999999998755 9999955  322 3444332   232 79999996433   47999999999999999975

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.64  E-value=5e-05  Score=74.42  Aligned_cols=222  Identities=8%  Similarity=0.003  Sum_probs=142.9

Q ss_pred             CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEec--C
Q psy14258        196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--N  271 (440)
Q Consensus       196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~  271 (440)
                      ..|...+++|...+.+... -.....+++.+.+.+|+++....  ..|...++.+.....+...  -.....+++..  .
T Consensus       159 ~~i~i~d~~g~~~~~l~~~-~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~--~~~~~~~~~spdg~  235 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGS  235 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC--SSCEEEEEECTTSS
T ss_pred             ceEEEEcCCCCCCEEEeCC-CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC--CCcccCEEEcCCCC
Confidence            4899999999877666543 34567899999999999887543  5899999877666555432  23456777764  3


Q ss_pred             EEEEEecC--CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCC--ccEEEEEEcCCCCCCc
Q psy14258        272 NLFVTSWR--NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK--PAIIKGLTFKRDGTTE  346 (440)
Q Consensus       272 ~ly~td~~--~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~--~~~I~~i~~~~~~~~~  346 (440)
                      .|+++...  ...|+..+..+++...+.........+...          |+ .+|+++...  ...|+.+++++. .. 
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s----------pdg~~l~~~s~~~g~~~i~~~d~~~~-~~-  303 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF----------PDSQNLAFTSDQAGRPQVYKVNINGG-AP-  303 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEEC----------TTSSEEEEEECTTSSCEEEEEETTSS-CC-
T ss_pred             EEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEEC----------CCCCEEEEEECCCCCcEEEEEECCCC-CE-
Confidence            68876543  345888887666543222111122233222          33 445555432  237888888765 11 


Q ss_pred             eeeeeecCCCCceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCC--e
Q psy14258        347 QAIMPITDLKRPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG--T  422 (440)
Q Consensus       347 ~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~--~  422 (440)
                        ............+++.+.+++|+++...  ...|+..++++.....+.. . ..+..+++.+.++.|+++....+  .
T Consensus       304 --~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          304 --QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-T-FLDETPSLAPNGTMVIYSSSQGMGSV  379 (415)
T ss_dssp             --EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-S-SSCEEEEECTTSSEEEEEEEETTEEE
T ss_pred             --EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-C-CCcCCeEEcCCCCEEEEEEcCCCccE
Confidence              1111122345578999999999988754  4689999998765544332 3 37889999998988888865444  7


Q ss_pred             EEEEEeCCCeeeEEe
Q psy14258        423 INVAKISDFSIRKVL  437 (440)
Q Consensus       423 I~~~~~~g~~~~~~l  437 (440)
                      |.+.+++| ...+.|
T Consensus       380 l~~~d~~g-~~~~~l  393 (415)
T 2hqs_A          380 LNLVSTDG-RFKARL  393 (415)
T ss_dssp             EEEEETTS-CCEEEC
T ss_pred             EEEEECCC-CcEEEe
Confidence            99999998 434433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.61  E-value=7.1e-05  Score=73.33  Aligned_cols=238  Identities=11%  Similarity=-0.003  Sum_probs=150.9

Q ss_pred             eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258        152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV  231 (440)
Q Consensus       152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l  231 (440)
                      .|.+.+++|...+.+.. ......++++.|...+|+++........|...++++.....+.. .-.....+++.+.+.+|
T Consensus       160 ~i~i~d~~g~~~~~l~~-~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-~~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          160 ELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             EEEEEETTSCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-CSSCEEEEEECTTSSEE
T ss_pred             eEEEEcCCCCCCEEEeC-CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-CCCcccCEEEcCCCCEE
Confidence            68888999877766654 33568899999977778888765322589999998766554432 23456789999888889


Q ss_pred             EEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEec--CEEEEEecCC--CeEEEEeccCCCceEEEecCCCCeE
Q psy14258        232 YWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRN--QSIIRVNKFNSDDYETIANFSRPFA  305 (440)
Q Consensus       232 y~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~--~~i~~~~~~~g~~~~~~~~~~~p~~  305 (440)
                      +++....  ..|+..++.+.....+...  -.....+++..  ..|+++....  ..|+.++..+++...+.........
T Consensus       238 a~~~~~~g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~  315 (415)
T 2hqs_A          238 AFALSKTGSLNLYVMDLASGQIRQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQD  315 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEE
T ss_pred             EEEEecCCCceEEEEECCCCCEEeCcCC--CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccC
Confidence            9776443  4699999877665544332  22345666653  4677765433  3788888876654332221111222


Q ss_pred             EEEeccCCCCCCCCCc-eeEEeecCC--ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCC--eE
Q psy14258        306 IHIYHRQKQPDALKPS-TFLLYAKGK--PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY--VI  380 (440)
Q Consensus       306 ~~v~~~~~qp~~~~~~-~~l~~~~~~--~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~--~I  380 (440)
                      +.+.          |+ .+|+++...  ...|+.+++++.    .. ..+........+++.+.++.|+++....+  .|
T Consensus       316 ~~~s----------pdG~~l~~~~~~~g~~~i~~~d~~~~----~~-~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l  380 (415)
T 2hqs_A          316 ADVS----------SDGKFMVMVSSNGGQQHIAKQDLATG----GV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVL  380 (415)
T ss_dssp             EEEC----------TTSSEEEEEEECSSCEEEEEEETTTC----CE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             eEEC----------CCCCEEEEEECcCCceEEEEEECCCC----CE-EEecCCCCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence            3222          23 456665432  357888888765    11 22222235778999999999988865444  89


Q ss_pred             EEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258        381 ERRKMFGRGKEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       381 ~r~~~~g~~~~~~~~~~~~~~~glAvD~~  409 (440)
                      +..+++|...+.+.. .-+.+..+|..+.
T Consensus       381 ~~~d~~g~~~~~l~~-~~~~v~~~~~~~~  408 (415)
T 2hqs_A          381 NLVSTDGRFKARLPA-TDGQVKFPAWSPY  408 (415)
T ss_dssp             EEEETTSCCEEECCC-SSSEEEEEEECCC
T ss_pred             EEEECCCCcEEEeeC-CCCCCcCCccccc
Confidence            999999866555432 3345555665443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.61  E-value=0.00017  Score=69.51  Aligned_cols=318  Identities=6%  Similarity=-0.101  Sum_probs=181.1

Q ss_pred             EEEEEeeeccc-EEEEEEcCCCCceeEEe----CCCCC-cceeeccccccceeec----------cccccce-eeeecCC
Q psy14258         83 AIYFCTHYMEH-CMIAIDLNLSKPRGIAL----DPTSG-YMFFTKWGATRPMLER----------SLLDGTE-RFPMVTH  145 (440)
Q Consensus        83 ~~~i~~d~~~~-~ly~~d~~~~~I~~~~~----~~~~~-~~~~~~~~~~~v~~~~----------~~~~p~~-avD~~~~  145 (440)
                      +.++++++.++ .|..... .+.|...++    ..... -.+   .  ....+..          .-..+.. ++.+.++
T Consensus        48 v~~~~~s~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           48 IVSSTWNPLDESILAYGEK-NSVARLARIVETDQEGKKYWKL---T--IIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             CSEEEECSSCTTEEEEEET-BTEEEEEEEEEC------CEEE---E--EEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eEEEEECCCCCcEEEEecC-CceEEEEEEecccCCccccccc---c--ccccccccccccccccCCCCceEEEEEcCCCC
Confidence            88889998877 5555544 466666655    32220 000   0  0000111          1224555 6666565


Q ss_pred             cEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccC----
Q psy14258        146 KIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVY----  218 (440)
Q Consensus       146 ~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~----  218 (440)
                      .|+.+   +.|.+.+.++.....+ ........++++.|...+|+.+...   +.|...++........+......    
T Consensus       122 ~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVE---NVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETT---CCEEEEETTTTEEEEEECCC-------
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeec-cCCCccEEEEEECCCCCEEEEEecC---CeEEEEECCCCcEEEEeeccccCccce
Confidence            55554   6788888777766555 3345678999999966666666544   57888888544332222211111    


Q ss_pred             -----------ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEE
Q psy14258        219 -----------PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRV  286 (440)
Q Consensus       219 -----------P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~  286 (440)
                                 ...+++.+ .+.++ +-...+.|...++........... .......+++..+ .++++-...+.|...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  274 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVD-DDKFV-IPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDDGTLRIW  274 (425)
T ss_dssp             --------CCCBSCCEEEE-TTEEE-EECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eeccccCCcceeeEEEEcC-CCEEE-EEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence                       45666663 34444 444567888888765443322222 1234567777644 344444457788888


Q ss_pred             eccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEE
Q psy14258        287 NKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYH  364 (440)
Q Consensus       287 ~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d  364 (440)
                      +..+++....+.... ....+.+.          |++ ++++-+..+.|+.+++...    .....+.. -..+..+++.
T Consensus       275 d~~~~~~~~~~~~~~~~i~~~~~~----------~~~-~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          275 HGGNGNSQNCFYGHSQSIVSASWV----------GDD-KVISCSMDGSVRLWSLKQN----TLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             CSSSBSCSEEECCCSSCEEEEEEE----------TTT-EEEEEETTSEEEEEETTTT----EEEEEEECTTCCEEEEEEC
T ss_pred             ECCCCccceEecCCCccEEEEEEC----------CCC-EEEEEeCCCcEEEEECCCC----cEeEecccCCccEEEEEEc
Confidence            877666665554322 33444443          344 4444344578888888655    22222222 3356789999


Q ss_pred             cCCCEEEEEECCCCeEEEEecCCCC--------------------eEEEEECCCC--CeeeEEEecCCCcEEEEeCCCCe
Q psy14258        365 EKEEYIYYAELTSYVIERRKMFGRG--------------------KEVVIDTGIY--NVEGMAVDWMANNLYWTDAGIGT  422 (440)
Q Consensus       365 ~~~~~vy~~d~~~~~I~r~~~~g~~--------------------~~~~~~~~~~--~~~glAvD~~~~~lYwtd~~~~~  422 (440)
                      +.++.|+.+. ..+.|...++....                    ....+.....  .+..+++.+.++.|+.+. ..+.
T Consensus       340 ~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~  417 (425)
T 1r5m_A          340 QDGQKYAVAF-MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY-SLQE  417 (425)
T ss_dssp             TTSSEEEEEE-TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE-SSSC
T ss_pred             CCCCEEEEEE-CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe-cCce
Confidence            9888666554 57788888876433                    2222222222  788999998777666554 4678


Q ss_pred             EEEEEeCC
Q psy14258        423 INVAKISD  430 (440)
Q Consensus       423 I~~~~~~g  430 (440)
                      |.+.+++|
T Consensus       418 i~iw~~~g  425 (425)
T 1r5m_A          418 GSVVAIPG  425 (425)
T ss_dssp             CEEEECCC
T ss_pred             EEEEeecC
Confidence            99988876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.53  E-value=0.00025  Score=77.91  Aligned_cols=348  Identities=6%  Similarity=-0.063  Sum_probs=191.4

Q ss_pred             eEEEEeecccceeeeEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcC-----CCCceeEEeCCCCCcceeec
Q psy14258         48 THLYETIEAFWEECFGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLN-----LSKPRGIALDPTSGYMFFTK  121 (440)
Q Consensus        48 ~ll~s~~~~~~~~~I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~-----~~~I~~~~~~~~~~~~~~~~  121 (440)
                      .|.|+....     |+..++.+.... +.-...  .+..+++.+.+++|.|+...     ...|+...+.+.....+   
T Consensus        26 ~iaf~~~~~-----l~~~~~~gg~~~~lt~~~~--~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~l---   95 (1045)
T 1k32_A           26 RIIFVCCDD-----LWEHDLKSGSTRKIVSNLG--VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI---   95 (1045)
T ss_dssp             EEEEEETTE-----EEEEETTTCCEEEEECSSS--EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC---
T ss_pred             EEEEEECCc-----EEEEECCCCcEEEeeeCCC--cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEc---
Confidence            566766677     888999876554 332222  38899999999999888543     23577666655432221   


Q ss_pred             cccccceeeccccccce-eeeecCCcEEEe-c---------eEEEEecCCceEEEEEcCC--------------------
Q psy14258        122 WGATRPMLERSLLDGTE-RFPMVTHKIVYP-E---------AIYFCTHYMEHCMIAIDLN--------------------  170 (440)
Q Consensus       122 ~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-~---------~I~~~~~dg~~~~~~~~~~--------------------  170 (440)
                      +.... ..........+ ++.+.++ ++++ .         +|.+.++++...+.+....                    
T Consensus        96 t~~~~-~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~  173 (1045)
T 1k32_A           96 TYFSG-KSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFEL  173 (1045)
T ss_dssp             CCCCE-EEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCC
T ss_pred             ccCCC-cccccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCc
Confidence            00000 00000111255 7777776 5555 1         3777777765544332210                    


Q ss_pred             -----------------------------CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceE
Q psy14258        171 -----------------------------LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG  221 (440)
Q Consensus       171 -----------------------------~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~g  221 (440)
                                                   ......++..+  ..+|++.......+|+..+.+|...+.+....  ....
T Consensus       174 ~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--~~~~  249 (1045)
T 1k32_A          174 PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYP  249 (1045)
T ss_dssp             TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCE
T ss_pred             cccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--CEEEEEEeccCceEEEEEeCCCCcceEecCCC--Ccce
Confidence                                         01112223333  24555432221257888888776655443322  2234


Q ss_pred             EEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCC---------ccCceeeeeEe-cC--EEEEEecCCCeEEEEecc
Q psy14258        222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGF---------PVQNLYDITVF-EN--NLFVTSWRNQSIIRVNKF  289 (440)
Q Consensus       222 l~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~---------~~~~p~gl~~~-~~--~ly~td~~~~~i~~~~~~  289 (440)
                      +++.+.+.+|.++.  .+.|...+..+.....+....         ....+.++++. .+  .|.+..  .+.|+.++..
T Consensus       250 ~~~SpDG~~la~~~--~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~  325 (1045)
T 1k32_A          250 RHLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVS  325 (1045)
T ss_dssp             EEEEESSSCEEEEE--TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTT
T ss_pred             eeEcCCCCEEEEEe--CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCC
Confidence            56776777777763  467877777544333221110         01134566666 43  565554  5667777765


Q ss_pred             CCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEE-EEEcCCCCCCceeeeeecCCCCceEEEEEcCCC
Q psy14258        290 NSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIK-GLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE  368 (440)
Q Consensus       290 ~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~-~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~  368 (440)
                      ++.... +..  .+. ..+.+..    -. ....|+++.. ...++ .+++++. ..  ..+. .....+..+++.+.++
T Consensus       326 ~~~~~~-~~~--~~~-~~~~~~~----~s-dg~~l~~~s~-~~~l~~~~d~~~~-~~--~~l~-~~~~~~~~~~~SpDG~  391 (1045)
T 1k32_A          326 GTYVLK-VPE--PLR-IRYVRRG----GD-TKVAFIHGTR-EGDFLGIYDYRTG-KA--EKFE-ENLGNVFAMGVDRNGK  391 (1045)
T ss_dssp             SSBEEE-CSC--CSC-EEEEEEC----SS-SEEEEEEEET-TEEEEEEEETTTC-CE--EECC-CCCCSEEEEEECTTSS
T ss_pred             CCceEE-ccC--CCc-ceEEeee----Ec-CCCeEEEEEC-CCceEEEEECCCC-Cc--eEec-CCccceeeeEECCCCC
Confidence            544322 111  111 0111100    01 1233444433 36777 7777655 11  1122 2234577899999999


Q ss_pred             EEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC---------CCeEEEEEeCC
Q psy14258        369 YIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG---------IGTINVAKISD  430 (440)
Q Consensus       369 ~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~---------~~~I~~~~~~g  430 (440)
                      .|+++. ..+.|+..++.+.....+.......+..+++.+.++.|.++...         .+.|.+.++++
T Consensus       392 ~la~~~-~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          392 FAVVAN-DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             EEEEEC-CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            888776 45799999998765555554444556889999999988887542         25899999887

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.50  E-value=0.00083  Score=71.17  Aligned_cols=275  Identities=9%  Similarity=0.006  Sum_probs=157.1

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.++++++.+..|..+.. .+.|...++....  .+        ..+...-..+.. ++.+.++.|..+   +.|.+.+
T Consensus        15 ~v~~i~~sp~~~~la~~~~-~g~v~iwd~~~~~--~~--------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLY-SGRVEIWNYETQV--EV--------RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CEEEEEECSSSSEEEEEET-TSEEEEEETTTTE--EE--------EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeC-CCEEEEEECCCCc--eE--------EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            3899999998887777664 3566555543221  11        012222334566 787777766666   7899999


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC-CceeEEecCccCceEEEEeCCCCEEEEEeC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT-ERFPMVTHKIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~-~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      ++.......+.........+++.|...+|..+...   +.|...+++.. .....+...-.....+++.+.++.++.+-.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT---SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCC---CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence            87655444444455678999999976667665544   57888888765 222333333445778899874555555555


Q ss_pred             CCCcEEEEEccCCCc-EEEecCCccCceeeeeEe---cCEEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEecc
Q psy14258        237 YLDFIDRINYDGTDR-KTIRKGFPVQNLYDITVF---ENNLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHR  311 (440)
Q Consensus       237 ~~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~---~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~  311 (440)
                      ..+.|...++..... ..+... .......+++.   .+.++++-...+.|...+..+++....+.... ....+.+.  
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--  237 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--  237 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--
T ss_pred             CCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--
Confidence            677888888765443 333322 12344556664   33455555567788888876666555544322 23333332  


Q ss_pred             CCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee-cCCCCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       312 ~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                              |++-++++-+..+.|+..++...    .....+ .....+.++++.+.+..++++....+.+...++
T Consensus       238 --------~~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          238 --------PTLPIIISGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             --------SSSSEEEEEETTSCEEEEETTTC----SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             --------CCCCEEEEEeCCCeEEEEECCCC----cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence                    23223333333477888877654    111111 122345577777766654444434444444443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.48  E-value=0.00026  Score=74.05  Aligned_cols=276  Identities=7%  Similarity=-0.022  Sum_probs=167.7

Q ss_pred             cccce-eeeecCCcEEEe--ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC-----
Q psy14258        134 LDGTE-RFPMVTHKIVYP--EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG-----  205 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG-----  205 (440)
                      ..+.. ++.+. +.+.++  +.|.+.++++.....+.. .-..+..+++.|...+|.++..    ..|...++++     
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~SpdG~~la~~~~----~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFD-TNEETASLDFSPVGDRVAYVRN----HNLYIARGGKLGEGM  155 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEEC-CTTCCTTCEECTTSSEEEEEET----TEEEEEECBCTTSCC
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccC-CcccccCCcCCCCCCEEEEEEC----CeEEEEecCcccccC
Confidence            34667 88877 666666  889999998876665544 3345778899997667877642    4899999876     


Q ss_pred             CCceeEEecCc--------------cCceEEEEeCCCCEEEEEeC--------------------------------CCC
Q psy14258        206 TERFPMVTHKI--------------VYPYGVTVDFPTKHVYWVDT--------------------------------YLD  239 (440)
Q Consensus       206 ~~~~~l~~~~~--------------~~P~gl~vD~~~~~ly~~d~--------------------------------~~~  239 (440)
                      .....+.....              ..+.++++.+.+.+|+++..                                ...
T Consensus       156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            44333322211              12578999999999988751                                234


Q ss_pred             cEEEEEccCCCcEEEecC-CccCceeeeeEec--CEEEEEecCC----CeEEEEeccCCCceE-EEecCC-C----CeEE
Q psy14258        240 FIDRINYDGTDRKTIRKG-FPVQNLYDITVFE--NNLFVTSWRN----QSIIRVNKFNSDDYE-TIANFS-R----PFAI  306 (440)
Q Consensus       240 ~i~~~~~dG~~~~~i~~~-~~~~~p~gl~~~~--~~ly~td~~~----~~i~~~~~~~g~~~~-~~~~~~-~----p~~~  306 (440)
                      .|...++++.....+... ..-..+..+++..  ..|+++....    ..|+.++..+|+... +..... .    ...+
T Consensus       236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  315 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL  315 (706)
T ss_dssp             EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence            677888776654444322 1123355677654  3677754322    378888887773333 322111 0    0111


Q ss_pred             EEeccCCCCCCCCC--c-eeEEeecCC-ccEEEEEEcCCCCCCceeeeeecCCCC-ceE-EEEEcCCCEEEEEECCCC--
Q psy14258        307 HIYHRQKQPDALKP--S-TFLLYAKGK-PAIIKGLTFKRDGTTEQAIMPITDLKR-PSV-IDYHEKEEYIYYAELTSY--  378 (440)
Q Consensus       307 ~v~~~~~qp~~~~~--~-~~l~~~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~~~-p~~-l~~d~~~~~vy~~d~~~~--  378 (440)
                      .+          .|  + .+|+.+... ...|+.++.++.    . ...+..... ... +++++.++.||++....+  
T Consensus       316 ~~----------sp~~dg~~l~~~~~~g~~~l~~~~~~~~----~-~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~  380 (706)
T 2z3z_A          316 TF----------LPGSNNQFIWQSRRDGWNHLYLYDTTGR----L-IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPL  380 (706)
T ss_dssp             EE----------CTTCSSEEEEEECTTSSCEEEEEETTSC----E-EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTT
T ss_pred             ee----------ecCCCCEEEEEEccCCccEEEEEECCCC----E-EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCc
Confidence            11          13  3 355544332 246666665444    1 222222222 234 789999999999976654  


Q ss_pred             --eEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC---CCeEEEEEeCCCe
Q psy14258        379 --VIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG---IGTINVAKISDFS  432 (440)
Q Consensus       379 --~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~---~~~I~~~~~~g~~  432 (440)
                        .|++.++++...+.+.  ....+..+++.+.++.|..+...   -..|.+.++++.+
T Consensus       381 ~~~l~~~d~~~~~~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          381 ERHFYCIDIKGGKTKDLT--PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CBEEEEEETTCCCCEESC--CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             eEEEEEEEcCCCCceecc--CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence              8999999875544443  23457788998888877766332   2569999988733

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.47  E-value=7.2e-05  Score=71.84  Aligned_cols=276  Identities=10%  Similarity=-0.013  Sum_probs=155.6

Q ss_pred             eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE
Q psy14258        139 RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV  212 (440)
Q Consensus       139 avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~  212 (440)
                      ++.+.++.|+++      ..|.+.++++...+.+.........+.++.|...+|+++...   ..|.+.++++...+.+.
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~---~~l~~~d~~~g~~~~~~  118 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG---RNLMRVDLATLEENVVY  118 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT---TEEEEEETTTCCEEEEE
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC---CeEEEEECCCCcceeee
Confidence            456667767776      258999999877766654332223367899987889998865   48999999987766555


Q ss_pred             ecCccCc--eEEEEeCCCCEEEEEe---------------------CCCCcEEEEEccCCCcEEEecCCccCceeeeeEe
Q psy14258        213 THKIVYP--YGVTVDFPTKHVYWVD---------------------TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF  269 (440)
Q Consensus       213 ~~~~~~P--~gl~vD~~~~~ly~~d---------------------~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~  269 (440)
                      .....+.  ....+++.+..|....                     .....|..+++.+...+.+...  -.....+++.
T Consensus       119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~s  196 (388)
T 3pe7_A          119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE--NQWLGHPIYR  196 (388)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE--SSCEEEEEEE
T ss_pred             echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC--CccccccEEC
Confidence            4332221  1233465555554321                     1235788888877776666543  1234555554


Q ss_pred             c---CEEEEEecC-----CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeE-EeecCCc---cEEEE
Q psy14258        270 E---NNLFVTSWR-----NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFL-LYAKGKP---AIIKG  336 (440)
Q Consensus       270 ~---~~ly~td~~-----~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l-~~~~~~~---~~I~~  336 (440)
                      .   ..|.++...     ...|+.++..++.... +.......  .+.++.-.     |+ ..| +.+....   ..|+.
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~--~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          197 PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGE--SCTHEFWV-----PDGSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTE--EEEEEEEC-----TTSSCEEEEEEETTCCCEEEEE
T ss_pred             CCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCc--ccccceEC-----CCCCEEEEEecCCCCCcceEEE
Confidence            4   356554432     3478888875443332 22211111  11111122     23 234 3333211   24888


Q ss_pred             EEcCCCCCCceeeeeecCC----CCceEEEEEcCCCEEEEEE--------CCCCeEEEEecCCCCeEEEEECCCC-----
Q psy14258        337 LTFKRDGTTEQAIMPITDL----KRPSVIDYHEKEEYIYYAE--------LTSYVIERRKMFGRGKEVVIDTGIY-----  399 (440)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~----~~p~~l~~d~~~~~vy~~d--------~~~~~I~r~~~~g~~~~~~~~~~~~-----  399 (440)
                      +++++. ... ......+.    ..+.++++.++++.|+++-        .....|++.++++...+.+.... .     
T Consensus       269 ~d~~~g-~~~-~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~  345 (388)
T 3pe7_A          269 ADPETL-ENR-QLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD-TSWKVF  345 (388)
T ss_dssp             ECTTTC-CEE-EEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC-CCCCCB
T ss_pred             EecCCC-ceE-EEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc-Cccccc
Confidence            887765 211 11111110    1244457888888888753        45678999999986655555422 2     


Q ss_pred             ------CeeeEEEecCCCcEEEEeC--CCCeEEEEEeCC
Q psy14258        400 ------NVEGMAVDWMANNLYWTDA--GIGTINVAKISD  430 (440)
Q Consensus       400 ------~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g  430 (440)
                            .+..+++.+.++.||++..  +...|.++++..
T Consensus       346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             ccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence                  3567789888999999864  345566666654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.47  E-value=0.0008  Score=64.77  Aligned_cols=275  Identities=6%  Similarity=-0.124  Sum_probs=158.9

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.++++++.++.|+....+ +.|...+..+....           .+......+.. ++.+.++.|+.+   +.|.+.+
T Consensus       110 ~v~~~~~s~~~~~l~~~~~d-g~i~i~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVEN-GELRLWNKTGALLN-----------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN  177 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETT-SCEEEEETTSCEEE-----------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCeee-----------eccCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence            49999999987777666544 56665553322111           12222334555 666666656655   6788888


Q ss_pred             cCCceEEEEEcCCCCC---------------ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEE
Q psy14258        158 HYMEHCMIAIDLNLSK---------------PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGV  222 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~---------------P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl  222 (440)
                      +........+......               ...++..+ .+.++.....   +.|...++........+.........+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---g~i~~~d~~~~~~~~~~~~~~~~i~~~  253 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-DDKFVIPGPK---GAIFVYQITEKTPTGKLIGHHGPISVL  253 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEE-TTEEEEECGG---GCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-CCEEEEEcCC---CeEEEEEcCCCceeeeeccCCCceEEE
Confidence            8765544333322222               67788877 4665555443   578888887654443443334456789


Q ss_pred             EEeCCCCEEEEEeCCCCcEEEEEccCCC-cEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCC
Q psy14258        223 TVDFPTKHVYWVDTYLDFIDRINYDGTD-RKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFS  301 (440)
Q Consensus       223 ~vD~~~~~ly~~d~~~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~  301 (440)
                      ++.+.+..|+.+. ..+.|...++.... ...+...  ......+++..+.++++-...+.|...+..+++....+....
T Consensus       254 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  330 (425)
T 1r5m_A          254 EFNDTNKLLLSAS-DDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG  330 (425)
T ss_dssp             EEETTTTEEEEEE-TTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred             EECCCCCEEEEEc-CCCEEEEEECCCCccceEecCC--CccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence            9997777666654 56678888875433 3333222  335677887765455555667888888877666555444322


Q ss_pred             -CCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCC----------------ceeeeeecCC--C-CceE
Q psy14258        302 -RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTT----------------EQAIMPITDL--K-RPSV  360 (440)
Q Consensus       302 -~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~----------------~~~~~~~~~~--~-~p~~  360 (440)
                       .+..+.+.          |+ .+|+.+ +..+.|+..++......                ......+...  . .+..
T Consensus       331 ~~i~~~~~s----------~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  399 (425)
T 1r5m_A          331 VPIFAGRIS----------QDGQKYAVA-FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD  399 (425)
T ss_dssp             CCEEEEEEC----------TTSSEEEEE-ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred             ccEEEEEEc----------CCCCEEEEE-ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence             33444433          23 344444 33477887777644100                0012222222  2 5678


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      ++|.+.+..|+.+. ..+.|+..++.|
T Consensus       400 ~~~s~~~~~l~~~~-~dg~i~iw~~~g  425 (425)
T 1r5m_A          400 LSWNCAGNKISVAY-SLQEGSVVAIPG  425 (425)
T ss_dssp             EEECTTSSEEEEEE-SSSCCEEEECCC
T ss_pred             EEccCCCceEEEEe-cCceEEEEeecC
Confidence            99998888776554 567777776654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.47  E-value=0.00023  Score=78.24  Aligned_cols=340  Identities=10%  Similarity=-0.097  Sum_probs=184.3

Q ss_pred             eEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-ee
Q psy14258         62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RF  140 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-av  140 (440)
                      |..+++++...........  ...+++++.++.|.++.  .+.|+..++....+..+.................+.. ++
T Consensus       228 l~~~~~~g~~~~~l~~~~~--~~~~~~SpDG~~la~~~--~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~  303 (1045)
T 1k32_A          228 IYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDF  303 (1045)
T ss_dssp             EEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEEE--TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEE
T ss_pred             EEEEeCCCCcceEecCCCC--cceeeEcCCCCEEEEEe--CCEEEEecCCceEeeeeccCcccccccccccccccceeee
Confidence            5556665543331111112  33456777777777663  3556655542222111100000000000011224667 88


Q ss_pred             e-ecCCcEEEe--ceEEEEecCCceEEEEEcCCCC-CceEEEEcCCCCeEEEEEcCCCCCcEE-EEeCCCCCceeEEecC
Q psy14258        141 P-MVTHKIVYP--EAIYFCTHYMEHCMIAIDLNLS-KPRGIALDPTSGYMFFTKWGATRPMLE-RSLLDGTERFPMVTHK  215 (440)
Q Consensus       141 D-~~~~~lY~~--~~I~~~~~dg~~~~~~~~~~~~-~P~~iavd~~~g~lywtd~~~~~~~I~-r~~~dG~~~~~l~~~~  215 (440)
                      . +.++.|.++  +.|.+.+.++.....+ ..... .+.+++.. ....|++....   .+|+ ..++++...+.+. ..
T Consensus       304 S~pdG~~la~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~---~~l~~~~d~~~~~~~~l~-~~  377 (1045)
T 1k32_A          304 SPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTRE---GDFLGIYDYRTGKAEKFE-EN  377 (1045)
T ss_dssp             EECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEETT---EEEEEEEETTTCCEEECC-CC
T ss_pred             cCCCCCEEEEEEcCEEEEEcCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEECC---CceEEEEECCCCCceEec-CC
Confidence            8 888877777  7888888877654443 22223 55667776 44456666542   5888 8888876655444 33


Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecC---------CCeEE
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWR---------NQSII  284 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~---------~~~i~  284 (440)
                      ...+..+++.+.+.+|+++.. .+.|...++.+.....+..+. .....++++..|  .|.++...         ...|+
T Consensus       378 ~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~  455 (1045)
T 1k32_A          378 LGNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  455 (1045)
T ss_dssp             CCSEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             ccceeeeEECCCCCEEEEECC-CCeEEEEECCCCceEEeccCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEE
Confidence            456788999988888988764 468999998776666665321 223356666543  67666542         25787


Q ss_pred             EEeccCCCceEEEe-cCCCCeEEEEeccCCCCCCCCCc-eeEEeecCC-----------------ccEEEEEEcCCCCCC
Q psy14258        285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK-----------------PAIIKGLTFKRDGTT  345 (440)
Q Consensus       285 ~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~-----------------~~~I~~i~~~~~~~~  345 (440)
                      ..+..+++ ...+. ....+..+.+.          |+ .+|+++...                 ...++.+.+......
T Consensus       456 l~d~~~g~-~~~l~~~~~~~~~~~~s----------pdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (1045)
T 1k32_A          456 VYDMEGRK-IFAATTENSHDYAPAFD----------ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN  524 (1045)
T ss_dssp             EEETTTTE-EEECSCSSSBEEEEEEC----------TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred             EEECCCCc-EEEeeCCCcccCCceEc----------CCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCC
Confidence            77876654 22222 11122222221          11 223322211                 012233333211000


Q ss_pred             ---------------------ceeeeeecCC-CCceEEEEEcCCCEEEE------------EECCCCeEEEEecCCCCeE
Q psy14258        346 ---------------------EQAIMPITDL-KRPSVIDYHEKEEYIYY------------AELTSYVIERRKMFGRGKE  391 (440)
Q Consensus       346 ---------------------~~~~~~~~~~-~~p~~l~~d~~~~~vy~------------~d~~~~~I~r~~~~g~~~~  391 (440)
                                           .....++... ....++++.+.+..+|.            +......|++.++.+...+
T Consensus       525 ~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~  604 (1045)
T 1k32_A          525 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT  604 (1045)
T ss_dssp             GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE
T ss_pred             ccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE
Confidence                                 0011222111 23457888875543432            1234568999998876655


Q ss_pred             EEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        392 VVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       392 ~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .+.    ..+..+++.+.++.|+++..+  .|.+.++..
T Consensus       605 ~l~----~~v~~~~~S~DG~~l~~~~~~--~i~~~d~~~  637 (1045)
T 1k32_A          605 EVK----NNLTDLRLSADRKTVMVRKDD--GKIYTFPLE  637 (1045)
T ss_dssp             EEE----EEEEEEEECTTSCEEEEEETT--SCEEEEESS
T ss_pred             Eee----cCcceEEECCCCCEEEEEcCC--cEEEEeCcc
Confidence            554    357889999999999999765  688888854

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.46  E-value=0.0011  Score=62.47  Aligned_cols=281  Identities=8%  Similarity=-0.059  Sum_probs=167.6

Q ss_pred             eeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD  204 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d  204 (440)
                      +...-..+.. ++.+.++.|+.+   +.|.+.++........+........++++.|...+|+.+...   +.|...+++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~  104 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD---YSIKLWDVS  104 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---TEEEEEETT
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECC
Confidence            3344445666 777766655555   678888877655444444455678899999965555555443   588888887


Q ss_pred             CCCceeEEecCccCceEEEEeCCCCEEEEEeCC----CCcEEEEEccCCC------------cEEEecCCccCceeeeeE
Q psy14258        205 GTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY----LDFIDRINYDGTD------------RKTIRKGFPVQNLYDITV  268 (440)
Q Consensus       205 G~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~----~~~i~~~~~dG~~------------~~~i~~~~~~~~p~gl~~  268 (440)
                      .......+. .-..+..+++.+.+..|+.+...    .+.|...++....            ...+...........+++
T Consensus       105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            554444433 33467889999877777776543    1567776654321            111111111114556666


Q ss_pred             ecC--EEEEEecCCCeEEEEeccC-CCceEEEecCC-CCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCC
Q psy14258        269 FEN--NLFVTSWRNQSIIRVNKFN-SDDYETIANFS-RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDG  343 (440)
Q Consensus       269 ~~~--~ly~td~~~~~i~~~~~~~-g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~  343 (440)
                      ..+  .|+.. ...+.|...+..+ ++....+.... ....+.+.          |+ .+|+.+ +..+.|+.+++... 
T Consensus       184 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~l~~~-~~d~~i~v~d~~~~-  250 (369)
T 3zwl_B          184 STKGKYIIAG-HKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS----------PDLTYFITS-SRDTNSFLVDVSTL-  250 (369)
T ss_dssp             CGGGCEEEEE-ETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC----------TTSSEEEEE-ETTSEEEEEETTTC-
T ss_pred             cCCCCEEEEE-cCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC----------CCCCEEEEe-cCCceEEEEECCCC-
Confidence            544  44444 4567888888766 33333443322 33444443          23 344444 33478888888655 


Q ss_pred             CCceeeeeecCCCCceEEEEEcCCCEEEEEECCCC-------------eEEEEecCCCCeEEEEECCCCCeeeEEEecCC
Q psy14258        344 TTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY-------------VIERRKMFGRGKEVVIDTGIYNVEGMAVDWMA  410 (440)
Q Consensus       344 ~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~-------------~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~  410 (440)
                         .....+..-.....+++++.+..++.+....+             .|...+.........+...-..+..+++.+.+
T Consensus       251 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~  327 (369)
T 3zwl_B          251 ---QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG  327 (369)
T ss_dssp             ---CEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             ---ceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC
Confidence               22223333345678999999998887764332             56666665544444444455778999998766


Q ss_pred             CcEEEEeCCCCeEEEEEeCC
Q psy14258        411 NNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       411 ~~lYwtd~~~~~I~~~~~~g  430 (440)
                      + +..+-...+.|.+.+++.
T Consensus       328 ~-~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          328 T-SYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             S-EEEEEETTSEEEEEEECH
T ss_pred             C-EEEEEcCCCeEEEEECcc
Confidence            5 444545578899998875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.43  E-value=0.00037  Score=66.73  Aligned_cols=278  Identities=7%  Similarity=-0.078  Sum_probs=151.2

Q ss_pred             EEeeecccEEEEEEcCCC--CceeEEeCCCCCcceeeccccccceeecccccc-ce-eeeecCCcEEEe---ceEEEEec
Q psy14258         86 FCTHYMEHCMIAIDLNLS--KPRGIALDPTSGYMFFTKWGATRPMLERSLLDG-TE-RFPMVTHKIVYP---EAIYFCTH  158 (440)
Q Consensus        86 i~~d~~~~~ly~~d~~~~--~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p-~~-avD~~~~~lY~~---~~I~~~~~  158 (440)
                      .++.+.+++|+++....+  .|+.+++++.....           +...-..+ .+ ++.+.++.|+++   ..|.+.++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-----------lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~  109 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-----------LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDL  109 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-----------CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-----------eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEEC
Confidence            457777787777765333  46666665443221           11111222 35 788888889988   47999999


Q ss_pred             CCceEEEEEcCCCCCc--eEEEEcCCCCeEEEEE--------------------cCCCCCcEEEEeCCCCCceeEEecCc
Q psy14258        159 YMEHCMIAIDLNLSKP--RGIALDPTSGYMFFTK--------------------WGATRPMLERSLLDGTERFPMVTHKI  216 (440)
Q Consensus       159 dg~~~~~~~~~~~~~P--~~iavd~~~g~lywtd--------------------~~~~~~~I~r~~~dG~~~~~l~~~~~  216 (440)
                      ++...+.+........  ...+++|....+....                    .... ..|.+.++++...+.+... .
T Consensus       110 ~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~g~~~~l~~~-~  187 (388)
T 3pe7_A          110 ATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC-CRLMRVDLKTGESTVILQE-N  187 (388)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC-EEEEEEETTTCCEEEEEEE-S
T ss_pred             CCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc-ceEEEEECCCCceEEeecC-C
Confidence            8877665554322211  1233466434443221                    1111 5799999987766655543 3


Q ss_pred             cCceEEEEeC-CCCEEEEEeCC-----CCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEE-EecCCC---eEE
Q psy14258        217 VYPYGVTVDF-PTKHVYWVDTY-----LDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFV-TSWRNQ---SII  284 (440)
Q Consensus       217 ~~P~gl~vD~-~~~~ly~~d~~-----~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~-td~~~~---~i~  284 (440)
                      .....+++.+ .+.+|.++...     ...|+.++.+|...+.+...........+++.  +..|++ ++....   .|+
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (388)
T 3pe7_A          188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIY  267 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred             ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEE
Confidence            4567889998 77888776643     34899999998877766543100123344554  345654 443222   388


Q ss_pred             EEeccCCCceEEEecCCCCeEEEEeccCCCCCCC--CCc-eeEEeec--------CCccEEEEEEcCCCCCCceeeeeec
Q psy14258        285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDAL--KPS-TFLLYAK--------GKPAIIKGLTFKRDGTTEQAIMPIT  353 (440)
Q Consensus       285 ~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~--~~~-~~l~~~~--------~~~~~I~~i~~~~~~~~~~~~~~~~  353 (440)
                      .++..+|+...+.. ..........     +...  .|+ ..|+++.        .....|+.+++++.    .......
T Consensus       268 ~~d~~~g~~~~l~~-~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~l~~  337 (388)
T 3pe7_A          268 SADPETLENRQLTS-MPACSHLMSN-----YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG----TQHRVAR  337 (388)
T ss_dssp             EECTTTCCEEEEEE-ECCEEEEEEC-----TTSSEEEEEECCC------------CCCCEEEEEETTTT----EEEEEEE
T ss_pred             EEecCCCceEEEEc-CCCceeeeec-----CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC----ceEEecc
Confidence            88887776543322 1110000000     0000  122 2333321        23467888887765    1111111


Q ss_pred             CCC-----------CceEEEEEcCCCEEEEEECC--CCeEEEEecC
Q psy14258        354 DLK-----------RPSVIDYHEKEEYIYYAELT--SYVIERRKMF  386 (440)
Q Consensus       354 ~~~-----------~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~  386 (440)
                      ...           ....+++.+++++|+++...  ...|+++++.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence            111           24567899999999988743  3457777665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.39  E-value=0.00013  Score=68.94  Aligned_cols=193  Identities=10%  Similarity=-0.023  Sum_probs=120.0

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeeccc-------EEEEEEcC--CCCceeEEeCCCCCc
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEH-------CMIAIDLN--LSKPRGIALDPTSGY  116 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~-------~ly~~d~~--~~~I~~~~~~~~~~~  116 (440)
                      .+.+++++.+.   +.+...+++|..... ++...  +.++|+-+.-.       .+|.++..  .++|..+.++.... 
T Consensus        39 ~~s~ii~t~k~---~gL~Vydl~G~~l~~-~~~g~--~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-  111 (355)
T 3amr_A           39 QNSKLITTNKK---SGLVVYSLDGKMLHS-YNTGK--LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-  111 (355)
T ss_dssp             GGCEEEEEETT---TEEEEEETTSCEEEE-ECCSC--EEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-
T ss_pred             CccEEEEEcCC---CCEEEEcCCCcEEEE-ccCCC--cccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-
Confidence            44566666443   348889998887762 22222  66666665322       57889988  88887777764321 


Q ss_pred             ceeeccccccceeeccccccce-ee--eecCCcE--EEe---ceEEEEec----CCceEEEEEcC--CCCCceEEEEcCC
Q psy14258        117 MFFTKWGATRPMLERSLLDGTE-RF--PMVTHKI--VYP---EAIYFCTH----YMEHCMIAIDL--NLSKPRGIALDPT  182 (440)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~p~~-av--D~~~~~l--Y~~---~~I~~~~~----dg~~~~~~~~~--~~~~P~~iavd~~  182 (440)
                      .+...+.. ...+...+..|.| ++  ++.++.+  |++   +++....+    +|.....++..  --.+|.++++|+.
T Consensus       112 ~l~~i~~~-~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~  190 (355)
T 3amr_A          112 TLQSMTDP-DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDE  190 (355)
T ss_dssp             CEEECSCT-TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETT
T ss_pred             ceeecccc-ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCC
Confidence            12111110 0012345689999 99  8877764  444   55555433    33222222221  1258999999999


Q ss_pred             CCeEEEEEcCCCCCcEEEEeCC--CCC-ceeEEe---cCcc-CceEEEEeCCC---CEEEEEeCCCCcEEEEEccCC
Q psy14258        183 SGYMFFTKWGATRPMLERSLLD--GTE-RFPMVT---HKIV-YPYGVTVDFPT---KHVYWVDTYLDFIDRINYDGT  249 (440)
Q Consensus       183 ~g~lywtd~~~~~~~I~r~~~d--G~~-~~~l~~---~~~~-~P~gl~vD~~~---~~ly~~d~~~~~i~~~~~dG~  249 (440)
                      .|+||++++..   .|++.+.+  +.. ++.+..   ..+. .|.||+|.+..   ++|+.++.+.+....++..++
T Consensus       191 ~g~Lyv~eEd~---GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          191 YGRLYIAEEDE---AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             TTEEEEEETTT---EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCeEEEecccc---eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            99999999883   69999965  322 333322   1233 79999996443   589999988888888887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.36  E-value=0.00026  Score=64.41  Aligned_cols=218  Identities=10%  Similarity=0.026  Sum_probs=132.4

Q ss_pred             CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC-CCcEEEecCCccCceeeeeEecC--E
Q psy14258        196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG-TDRKTIRKGFPVQNLYDITVFEN--N  272 (440)
Q Consensus       196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG-~~~~~i~~~~~~~~p~gl~~~~~--~  272 (440)
                      ..|...++++.....+... -..+..+++.+.+.+|+++.  .+.|...++++ .....+........+..+++..+  .
T Consensus        22 ~~i~~~d~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQT-PELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             eeEEEEeCCCCceeeeccC-CcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            5777777776555444432 34578899998888888875  56899999887 66665544321234556777543  7


Q ss_pred             EEEEecC---CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCcc--EEEEEEcCCCCCCc
Q psy14258        273 LFVTSWR---NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPA--IIKGLTFKRDGTTE  346 (440)
Q Consensus       273 ly~td~~---~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~--~I~~i~~~~~~~~~  346 (440)
                      |+++...   ...|+.++..+++. ..+.....+..+.+.          |+ .+|+++....+  .|+.+++++.    
T Consensus        99 l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~s----------pdg~~l~~~~~~~~~~~l~~~~~~~~----  163 (297)
T 2ojh_A           99 YAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWS----------PDGKSFTYCGIRDQVFDIYSMDIDSG----  163 (297)
T ss_dssp             EEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEEC----------TTSSEEEEEEEETTEEEEEEEETTTC----
T ss_pred             EEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEEC----------CCCCEEEEEECCCCceEEEEEECCCC----
Confidence            7777632   56788888765543 323222223333222          23 45554443224  4555555443    


Q ss_pred             eeeeeecCCCCceEEEEEcCCCEEEEEEC--CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC-----
Q psy14258        347 QAIMPITDLKRPSVIDYHEKEEYIYYAEL--TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG-----  419 (440)
Q Consensus       347 ~~~~~~~~~~~p~~l~~d~~~~~vy~~d~--~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~-----  419 (440)
                      ...........+..+++++.++.++++..  ....|+.+++++.....+. ..-..+..+++.+.++.|+++...     
T Consensus       164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFD  242 (297)
T ss_dssp             CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred             cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence            11111122235678999999998888763  4556777777765444432 233456778898888888887542     


Q ss_pred             -----CCeEEEEEeCCCe
Q psy14258        420 -----IGTINVAKISDFS  432 (440)
Q Consensus       420 -----~~~I~~~~~~g~~  432 (440)
                           ...|.+.++++.+
T Consensus       243 ~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             CCSSEEEEEEEEETTSCS
T ss_pred             ccccCceEEEEEecCCCC
Confidence                 2568999988744

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.34  E-value=0.0042  Score=65.73  Aligned_cols=281  Identities=9%  Similarity=0.010  Sum_probs=174.0

Q ss_pred             cccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258        132 SLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  207 (440)
Q Consensus       132 ~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~  207 (440)
                      .-..+.+ ++.+.+..|..+   +.|.+.+.........+...-....+++..|...+|......   +.|...+++...
T Consensus        12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~   88 (814)
T 3mkq_A           12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD---FRIRVFNYNTGE   88 (814)
T ss_dssp             ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT---SEEEEEETTTCC
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCc
Confidence            3345667 787777766665   688888876554443444445678999999966666666543   588888887554


Q ss_pred             ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC-CcEEEecCCccCceeeeeEec--CEEEEEecCCCeEE
Q psy14258        208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT-DRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSII  284 (440)
Q Consensus       208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~-~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~  284 (440)
                      ....+.........+++.+.+..|+.+. ..+.|...+++.. .......+. -.....+++..  +.++++-...+.|.
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~v~  166 (814)
T 3mkq_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGS-DDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNPKDPSTFASGCLDRTVK  166 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEE-TTSEEEEEEGGGTSEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             EEEEEecCCCCEEEEEEeCCCCEEEEEc-CCCEEEEEECCCCceEEEEEcCC-CCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence            4333443445678899998777777665 4567888887654 333333321 23457778765  35666666678888


Q ss_pred             EEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEE
Q psy14258        285 RVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVI  361 (440)
Q Consensus       285 ~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l  361 (440)
                      ..+..+++....+.... .+.....+++.       ++ .+|+.+ +..+.|...++...    .....+. .......+
T Consensus       167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~l~~~-~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          167 VWSLGQSTPNFTLTTGQERGVNYVDYYPL-------PDKPYMITA-SDDLTIKIWDYQTK----SCVATLEGHMSNVSFA  234 (814)
T ss_dssp             EEETTCSSCSEEEECCCTTCCCEEEECCS-------TTCCEEEEE-CTTSEEEEEETTTT----EEEEEEECCSSCEEEE
T ss_pred             EEECCCCcceeEEecCCCCCEEEEEEEEC-------CCCCEEEEE-eCCCEEEEEECCCC----cEEEEEcCCCCCEEEE
Confidence            88876666555443222 22222223221       13 344444 34478888887655    2222222 23356789


Q ss_pred             EEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       362 ~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ++.+.+..++.. ...+.|+..++...............+..+++.+.+.+++.+-...+.+.+.++..
T Consensus       235 ~~~~~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          235 VFHPTLPIIISG-SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             EECSSSSEEEEE-ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             EEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            999987755444 46788988888764444444445567888888887777666655566677776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.31  E-value=0.003  Score=60.95  Aligned_cols=270  Identities=8%  Similarity=-0.018  Sum_probs=168.8

Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceEEEEEcC-CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDL-NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH  214 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~-~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~  214 (440)
                      +++|..++++.+   +.|.+.+++......+... .......+++.|...+|+.....   +.|...++........+..
T Consensus        98 ~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~  174 (401)
T 4aez_A           98 LLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN---GLVDIYDVESQTKLRTMAG  174 (401)
T ss_dssp             CEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCEEEEECC
T ss_pred             EEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC---CeEEEEECcCCeEEEEecC
Confidence            688888877655   7899999886665544443 34668899999965566655544   5788888865544333333


Q ss_pred             CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC-CCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCC
Q psy14258        215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG-TDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       215 ~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG-~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~  292 (440)
                      .-.....++.+  ...|+.+ ...+.|...++.. ........+ ......++++..+ .++.+-...+.|...+..+++
T Consensus       175 ~~~~v~~~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  250 (401)
T 4aez_A          175 HQARVGCLSWN--RHVLSSG-SRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI  250 (401)
T ss_dssp             CSSCEEEEEEE--TTEEEEE-ETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS
T ss_pred             CCCceEEEEEC--CCEEEEE-cCCCCEEEEecccCcceeeEEcC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC
Confidence            33455667775  4455444 4567888888763 322222222 1345677777644 445554557788888877665


Q ss_pred             ceEEEecCC-CCeEEEEeccCCCCCCCCC-ceeEEeecC--CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCC
Q psy14258        293 DYETIANFS-RPFAIHIYHRQKQPDALKP-STFLLYAKG--KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE  368 (440)
Q Consensus       293 ~~~~~~~~~-~p~~~~v~~~~~qp~~~~~-~~~l~~~~~--~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~  368 (440)
                      ....+.... ....+.+.          | ...++++-+  ..+.|+..++...    .....+..-....++++.+.+.
T Consensus       251 ~~~~~~~~~~~v~~~~~~----------p~~~~ll~~~~gs~d~~i~i~d~~~~----~~~~~~~~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          251 PKFTKTNHNAAVKAVAWC----------PWQSNLLATGGGTMDKQIHFWNAATG----ARVNTVDAGSQVTSLIWSPHSK  316 (401)
T ss_dssp             EEEEECCCSSCCCEEEEC----------TTSTTEEEEECCTTTCEEEEEETTTC----CEEEEEECSSCEEEEEECSSSS
T ss_pred             ccEEecCCcceEEEEEEC----------CCCCCEEEEecCCCCCEEEEEECCCC----CEEEEEeCCCcEEEEEECCCCC
Confidence            555443322 33445443          2 234555432  3578888888655    2223333344678999999988


Q ss_pred             EEEEEE-CCCCeEEEEecCCCCeEEE--EECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        369 YIYYAE-LTSYVIERRKMFGRGKEVV--IDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       369 ~vy~~d-~~~~~I~r~~~~g~~~~~~--~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .++.+. ...+.|...++........  +...-..+..+++.+.+..|+ +-...+.|.+.++..
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~-s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS-TAASDENLKFWRVYD  380 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEE-EECTTSEEEEEECCC
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEE-EEeCCCcEEEEECCC
Confidence            887764 3578888888876433332  334456788999998666554 445578999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.30  E-value=0.0013  Score=63.53  Aligned_cols=264  Identities=8%  Similarity=-0.063  Sum_probs=155.9

Q ss_pred             ceEEEEecCCceEE----EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC-------ceeEEecCccCc
Q psy14258        151 EAIYFCTHYMEHCM----IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-------RFPMVTHKIVYP  219 (440)
Q Consensus       151 ~~I~~~~~dg~~~~----~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~-------~~~l~~~~~~~P  219 (440)
                      +.|.+.+++.....    ..+........++++.|..+.++.+-...  +.|...+++...       ....+...-...
T Consensus        57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d--g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v  134 (402)
T 2aq5_A           57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED--CTVMVWEIPDGGLVLPLREPVITLEGHTKRV  134 (402)
T ss_dssp             CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT--SEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred             CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC--CeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence            56777777553221    11122345678999999445555544333  578888876542       222233334567


Q ss_pred             eEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       220 ~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      ..+++.+.+.+++++-...+.|...++.......... .........+++..+ .++++-...+.|...+..+++....+
T Consensus       135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  214 (402)
T 2aq5_A          135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK  214 (402)
T ss_dssp             EEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence            8899987765555555566788888876544333331 111334577777643 44444445788888887776655544


Q ss_pred             -ecCC--CCeEEEEeccCCCCCCCCCceeEEeec---CCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEE
Q psy14258        298 -ANFS--RPFAIHIYHRQKQPDALKPSTFLLYAK---GKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY  371 (440)
Q Consensus       298 -~~~~--~p~~~~v~~~~~qp~~~~~~~~l~~~~---~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy  371 (440)
                       ..-.  .+..+...          |++.++++-   +..+.|...++... ........+........++|++.++.+|
T Consensus       215 ~~~~~~~~~~~~~~~----------~~~~~l~~g~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~  283 (402)
T 2aq5_A          215 DRPHEGTRPVHAVFV----------SEGKILTTGFSRMSERQVALWDTKHL-EEPLSLQELDTSSGVLLPFFDPDTNIVY  283 (402)
T ss_dssp             ECSSCSSSCCEEEEC----------STTEEEEEEECTTCCEEEEEEETTBC-SSCSEEEECCCCSSCEEEEEETTTTEEE
T ss_pred             ccCCCCCcceEEEEc----------CCCcEEEEeccCCCCceEEEEcCccc-cCCceEEeccCCCceeEEEEcCCCCEEE
Confidence             2222  23444433          343344432   34588988888765 2111122333344577999999999999


Q ss_pred             EEECCCCeEEEEecCCCC--eEEEEE-CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        372 YAELTSYVIERRKMFGRG--KEVVID-TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       372 ~~d~~~~~I~r~~~~g~~--~~~~~~-~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ++....+.|+..++....  ...+.. ..-..+.++++.+.+..+..   +.+.+.+.++..
T Consensus       284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s---~~~~~~~~~l~~  342 (402)
T 2aq5_A          284 LCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN---KCEIARFYKLHE  342 (402)
T ss_dssp             EEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG---GTEEEEEEEEET
T ss_pred             EEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee---cceeEEEEEcCC
Confidence            998888999999987654  333322 23356889999876654432   234677777665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.29  E-value=0.00052  Score=72.07  Aligned_cols=274  Identities=8%  Similarity=0.036  Sum_probs=158.8

Q ss_pred             ccce-eeeecCCcEEEe----c-----eEEEEecCCceEEEEEcCCCC------------------------CceEEEEc
Q psy14258        135 DGTE-RFPMVTHKIVYP----E-----AIYFCTHYMEHCMIAIDLNLS------------------------KPRGIALD  180 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~----~-----~I~~~~~dg~~~~~~~~~~~~------------------------~P~~iavd  180 (440)
                      .+.. ++.+.++.|+++    +     .|.+.++++...+.+......                        ...++++.
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            4667 888888888877    3     689999987766655542211                        25789999


Q ss_pred             CCCCeEEEEEcCCCCCcEEEEeCCCC---CceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC
Q psy14258        181 PTSGYMFFTKWGATRPMLERSLLDGT---ERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG  257 (440)
Q Consensus       181 ~~~g~lywtd~~~~~~~I~r~~~dG~---~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~  257 (440)
                      |...+|+++..    ..|+..++++.   ..+.+.. .-..+..+++.+.+++|+++..  +.|...++++.....+...
T Consensus       118 pDg~~l~~~~~----~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          118 PDAQRLLFPLG----GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             TTSSEEEEEET----TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET--TEEEEEETTTTEEEECCCC
T ss_pred             CCCCEEEEEeC----CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEeC--CcEEEEecCCCCEEEeccC
Confidence            97777888775    48999999887   4444432 2345788999999998988864  4799999887655444332


Q ss_pred             Ccc---------------CceeeeeEec--CEEEEEecCCC--------------------------------eEEEEec
Q psy14258        258 FPV---------------QNLYDITVFE--NNLFVTSWRNQ--------------------------------SIIRVNK  288 (440)
Q Consensus       258 ~~~---------------~~p~gl~~~~--~~ly~td~~~~--------------------------------~i~~~~~  288 (440)
                      ...               ..+.++++..  ..|+++.....                                .|+.++.
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            100               0135566653  46777643221                                4555555


Q ss_pred             cC-CCceEEEecCC---CCeEEEEeccCCCCCCCCCceeEEeecC----CccEEEEEEcCCCCCCceeeeeecCC---CC
Q psy14258        289 FN-SDDYETIANFS---RPFAIHIYHRQKQPDALKPSTFLLYAKG----KPAIIKGLTFKRDGTTEQAIMPITDL---KR  357 (440)
Q Consensus       289 ~~-g~~~~~~~~~~---~p~~~~v~~~~~qp~~~~~~~~l~~~~~----~~~~I~~i~~~~~~~~~~~~~~~~~~---~~  357 (440)
                      .+ ++...+.....   .+..+.+      |.    ..+|+++..    ....|+.+++++. ... .......-   ..
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~------pD----g~~l~~~~~~~~~~~~~i~~~d~~~g-~~~-~~~~~~~~~~~~~  338 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNW------RD----PQHLSFQRQSRDQKKLDLVEVTLASN-QQR-VLAHETSPTWVPL  338 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEE------EE----TTEEEEEEEETTSSEEEEEEEETTTC-CEE-EEEEEECSSCCCC
T ss_pred             CCCCceEEecCCCCcceEEEEEEe------CC----CCEEEEEEecccCCeEEEEEEECCCC-ceE-EEEEcCCCCcCCc
Confidence            54 44332221101   1112222      11    133444321    2356777777654 111 11111110   02


Q ss_pred             ceEEEEEcCCCEEEEEECCC--CeEEEEecCCCCeEEEEECCCCCeeeE-EEecCCCcEEEEeCCC----CeEEEEEeCC
Q psy14258        358 PSVIDYHEKEEYIYYAELTS--YVIERRKMFGRGKEVVIDTGIYNVEGM-AVDWMANNLYWTDAGI----GTINVAKISD  430 (440)
Q Consensus       358 p~~l~~d~~~~~vy~~d~~~--~~I~r~~~~g~~~~~~~~~~~~~~~gl-AvD~~~~~lYwtd~~~----~~I~~~~~~g  430 (440)
                      ...++|.++++ ++++....  ..|++++++|. ...+ ..+-..+..+ +++..++.||++-...    ..|..++++|
T Consensus       339 ~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g  415 (741)
T 2ecf_A          339 HNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG  415 (741)
T ss_dssp             CSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred             CCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence            24688988877 55554444  47888888776 4333 2233445566 5898888898875543    3455555666

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.26  E-value=0.00048  Score=71.35  Aligned_cols=231  Identities=9%  Similarity=0.014  Sum_probs=129.1

Q ss_pred             CCCCe-EEEEEcCCCCCcEEEEeCC--C-CCceeEEec----CccCceEEEEeCCCCEEEEEeCC---------CCcEEE
Q psy14258        181 PTSGY-MFFTKWGATRPMLERSLLD--G-TERFPMVTH----KIVYPYGVTVDFPTKHVYWVDTY---------LDFIDR  243 (440)
Q Consensus       181 ~~~g~-lywtd~~~~~~~I~r~~~d--G-~~~~~l~~~----~~~~P~gl~vD~~~~~ly~~d~~---------~~~i~~  243 (440)
                      |..++ |+++....  .+|+..+++  | ...+.+...    ....+..+++.+.+++|+++...         ...|..
T Consensus        88 PDg~~~la~~~~~~--~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           88 PAGGPLLVFTHFGD--QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             SSSSCEEEEEBTTT--CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred             cCCCeEEEEEECCC--CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence            76677 88887653  689999998  5 444444331    23456789999999999887643         147999


Q ss_pred             EEccC------CCcEEEe-cCCccCceeeeeEe--cCEEEEEecCC-------CeEEEEecc-CCC--ceE-EEecC-CC
Q psy14258        244 INYDG------TDRKTIR-KGFPVQNLYDITVF--ENNLFVTSWRN-------QSIIRVNKF-NSD--DYE-TIANF-SR  302 (440)
Q Consensus       244 ~~~dG------~~~~~i~-~~~~~~~p~gl~~~--~~~ly~td~~~-------~~i~~~~~~-~g~--~~~-~~~~~-~~  302 (440)
                      +++++      ...+.+. .+  -....++++.  +..|+++.+..       ..|+.++.. +|+  ... +.... ..
T Consensus       166 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          166 VPLDGSAAADRSAVRELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA  243 (662)
T ss_dssp             EETTSTTTTCGGGSEESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred             EECCCCccccCCceeEEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence            99988      5666554 32  2234455554  44888877543       578888876 352  222 33221 22


Q ss_pred             CeEEEEeccCCCCCCCCCceeEEeecCCcc--EEEEEEcCCCCCCceeeeeec-CCCC------ceEEEEEcCCCEEEEE
Q psy14258        303 PFAIHIYHRQKQPDALKPSTFLLYAKGKPA--IIKGLTFKRDGTTEQAIMPIT-DLKR------PSVIDYHEKEEYIYYA  373 (440)
Q Consensus       303 p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~--~I~~i~~~~~~~~~~~~~~~~-~~~~------p~~l~~d~~~~~vy~~  373 (440)
                      +..+...          |++-++++....+  .|+++++++. ... ...+.. ....      ...+++.+.+..+|.+
T Consensus       244 ~~~~~~s----------pdg~l~~~~~~~~~~~l~~~~~~~~-~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          244 IAQAEWA----------PDGSLIVATDRTGWWNLHRVDPATG-AAT-QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             EEEEEEC----------TTSCEEEEECTTSSCEEEEECTTTC-CEE-ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             EcceEEC----------CCCeEEEEECCCCCeEEEEEECCCC-cee-ecccccccccCccccccCceEeEeCCCEEEEEE
Confidence            3333322          3332444433334  7888877544 110 000100 0101      2457776665544444


Q ss_pred             ECCCCeEEEEecCCCCeEEEEECCCCCeeeE-EEecCCCcEEEEeCC-C--CeEEEEEeCC
Q psy14258        374 ELTSYVIERRKMFGRGKEVVIDTGIYNVEGM-AVDWMANNLYWTDAG-I--GTINVAKISD  430 (440)
Q Consensus       374 d~~~~~I~r~~~~g~~~~~~~~~~~~~~~gl-AvD~~~~~lYwtd~~-~--~~I~~~~~~g  430 (440)
                      ..+...|+++++++...+.+ ........++ +.|  ++.++++-.. .  ..|..+++++
T Consensus       312 ~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~  369 (662)
T 3azo_A          312 GKGAAVLGILDPESGELVDA-AGPWTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVT  369 (662)
T ss_dssp             BSSSCEEEEEETTTTEEEEC-CSSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTT
T ss_pred             EcCccEEEEEECCCCcEEEe-cCCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCC
Confidence            33455688888876554443 2233445666 666  6666665432 2  2566666655

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.23  E-value=0.00019  Score=68.85  Aligned_cols=274  Identities=9%  Similarity=0.004  Sum_probs=148.8

Q ss_pred             cce-eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        136 GTE-RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       136 p~~-avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      +.. ++.+.++.|+++      ..|.+.++++...+.+.........+++..|...+|+++...   ..|++.++++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~---~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE---LNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT---TEEEEEETTTCCE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC---CcEEEEECCCCCc
Confidence            455 677778877766      268888988876655533222112236778877788888755   3799999988766


Q ss_pred             eeEEecCcc-CceEEEE------------------eCCCCEEEEEe----CCCCcEEEEEccCCCcEEEecCCccCceee
Q psy14258        209 FPMVTHKIV-YPYGVTV------------------DFPTKHVYWVD----TYLDFIDRINYDGTDRKTIRKGFPVQNLYD  265 (440)
Q Consensus       209 ~~l~~~~~~-~P~gl~v------------------D~~~~~ly~~d----~~~~~i~~~~~dG~~~~~i~~~~~~~~p~g  265 (440)
                      +.+...... .|.|-.+                  .+.+..+++..    .....|..+++++.....+...  ......
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~--~~~~~~  192 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD--TAWLGH  192 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE--SSCEEE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC--Cccccc
Confidence            655542221 2332111                  22233333322    2344677788776665555432  223445


Q ss_pred             eeEec---CEEEEEecC-C----CeEEEEeccCCCceEEEecC-C-CCeEEEEeccCCCCCCCCCc-eeEEeecC--Cc-
Q psy14258        266 ITVFE---NNLFVTSWR-N----QSIIRVNKFNSDDYETIANF-S-RPFAIHIYHRQKQPDALKPS-TFLLYAKG--KP-  331 (440)
Q Consensus       266 l~~~~---~~ly~td~~-~----~~i~~~~~~~g~~~~~~~~~-~-~p~~~~v~~~~~qp~~~~~~-~~l~~~~~--~~-  331 (440)
                      +++..   ..|++.... .    ..|+.++..+++...+.... . .+..+. +.         |+ .+|+++..  .. 
T Consensus       193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~s---------pdg~~l~~~~~~~~~~  262 (396)
T 3c5m_A          193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF-WI---------PDGSAMAYVSYFKGQT  262 (396)
T ss_dssp             EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE-EC---------TTSSCEEEEEEETTTC
T ss_pred             ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE-EC---------CCCCEEEEEecCCCCc
Confidence            55543   356655422 2    46888887544433322211 0 111122 21         23 33444421  12 


Q ss_pred             -cEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc-CCCEEEEEEC---------------CCCeEEEEecCCCCeEEEE
Q psy14258        332 -AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE-KEEYIYYAEL---------------TSYVIERRKMFGRGKEVVI  394 (440)
Q Consensus       332 -~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~-~~~~vy~~d~---------------~~~~I~r~~~~g~~~~~~~  394 (440)
                       ..|+.+++++. ..    ..+..+.... +++.+ .+..++.+..               ....|+..++++...+.+.
T Consensus       263 ~~~l~~~d~~~g-~~----~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (396)
T 3c5m_A          263 DRVIYKANPETL-EN----EEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC  336 (396)
T ss_dssp             CEEEEEECTTTC-CE----EEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred             cceEEEEECCCC-Ce----EEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence             34888887654 11    1111111122 77888 7775555431               3478999999876555554


Q ss_pred             ECCCC----------CeeeEEEecCCCcEEEEeCC--CCeEEEEEeCC
Q psy14258        395 DTGIY----------NVEGMAVDWMANNLYWTDAG--IGTINVAKISD  430 (440)
Q Consensus       395 ~~~~~----------~~~glAvD~~~~~lYwtd~~--~~~I~~~~~~g  430 (440)
                      .....          .+..+++.+.++.|+++...  ...|..+++++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~  384 (396)
T 3c5m_A          337 KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE  384 (396)
T ss_dssp             ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred             CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence            42211          14557888888899988653  44677777777

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.21  E-value=0.00016  Score=69.91  Aligned_cols=281  Identities=7%  Similarity=-0.031  Sum_probs=156.9

Q ss_pred             EEEEEeeecccEEEEEE----------cCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-
Q psy14258         83 AIYFCTHYMEHCMIAID----------LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-  150 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d----------~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-  150 (440)
                      +.+++|++.++.+..+-          ...+.|+..++.......        .+.....-..+.. ++.+.++.|+.+ 
T Consensus        15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~   86 (416)
T 2pm9_A           15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK--------PIASLQVDSKFNDLDWSHNNKIIAGAL   86 (416)
T ss_dssp             SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS--------CSCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc--------EEEEEecCCceEEEEECCCCCeEEEEc
Confidence            56677887766455554          344566665554322100        0101112233455 666666656555 


Q ss_pred             --ceEEEEecCC----ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC------ceeEE---ecC
Q psy14258        151 --EAIYFCTHYM----EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE------RFPMV---THK  215 (440)
Q Consensus       151 --~~I~~~~~dg----~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~------~~~l~---~~~  215 (440)
                        +.|.+.+++.    ......+.........+++.|..+.++.+-...  +.|...++....      .....   ...
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN--GEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS--SCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC--CeEEEEECCCCccccccccccccccccCC
Confidence              6888888876    223333333446788999999745555554332  578888887654      21111   112


Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCc-----cCceeeeeEecC--EEEEEecCCC---eEEE
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFP-----VQNLYDITVFEN--NLFVTSWRNQ---SIIR  285 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~-----~~~p~gl~~~~~--~ly~td~~~~---~i~~  285 (440)
                      ......+++.+.++.++.+-...+.|...++.............     ......+++..+  .++++-...+   .|..
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence            34567899987756666666677889998887654433332210     234567777654  4555555555   7777


Q ss_pred             EeccCCCc-eEEEe-cCC-CCeEEEEeccCCCCCCCCC-ceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceE
Q psy14258        286 VNKFNSDD-YETIA-NFS-RPFAIHIYHRQKQPDALKP-STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSV  360 (440)
Q Consensus       286 ~~~~~g~~-~~~~~-~~~-~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~  360 (440)
                      .+..+++. ...+. .-. .+..+.+.          | ++.++++-+..+.|+..++...    .....+.. -....+
T Consensus       245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s----------~~~~~~l~s~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~  310 (416)
T 2pm9_A          245 WDLRNANTPLQTLNQGHQKGILSLDWC----------HQDEHLLLSSGRDNTVLLWNPESA----EQLSQFPARGNWCFK  310 (416)
T ss_dssp             EETTSTTSCSBCCCSCCSSCEEEEEEC----------SSCSSCEEEEESSSEEEEECSSSC----CEEEEEECSSSCCCC
T ss_pred             EeCCCCCCCcEEeecCccCceeEEEeC----------CCCCCeEEEEeCCCCEEEeeCCCC----ccceeecCCCCceEE
Confidence            77766532 22332 211 23344333          2 2233333334478888887654    22222222 234568


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      ++|.+.+..++++-...+.|...++..
T Consensus       311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          311 TKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEccC
Confidence            999998745667766788888888765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.16  E-value=0.0047  Score=57.15  Aligned_cols=276  Identities=9%  Similarity=0.030  Sum_probs=152.2

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|++.+..|.-+. ..+.|...++....  .+        ..+...-..... ++.+.++.|+.+   +.|.+.+
T Consensus        15 ~V~~~~fsp~~~~l~s~~-~dg~v~lWd~~~~~--~~--------~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTL-YSGRVELWNYETQV--EV--------RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CEEEEEECSSSSEEEEEE-TTSEEEEEETTTTE--EE--------EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEc-CCCcEEEEECCCCc--ee--------EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            399999999877666554 44666655543221  11        011112223445 676666655544   6898889


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc-eeEEecCccCceEEEEeCCCCEEEEEeC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER-FPMVTHKIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~-~~l~~~~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      +....+...+........+|++.|...+|.-....   +.|...++..... ...+...-.....+++++.++.++.+-.
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D---~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT---SCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCC---CeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence            87655444444455678899999965555544433   5788878764422 2222223345678899876655555555


Q ss_pred             CCCcEEEEEccCCC-cEEEecCCccCceeeeeEe---cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccC
Q psy14258        237 YLDFIDRINYDGTD-RKTIRKGFPVQNLYDITVF---ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQ  312 (440)
Q Consensus       237 ~~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~---~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~  312 (440)
                      ..+.|..-++.... ...+..+. ......+++.   ++.+..+-...+.|...+..+++....+..-..+.....++  
T Consensus       161 ~D~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~--  237 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--  237 (304)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--
T ss_pred             CCCeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEEC--
Confidence            66788888875433 33332221 1222334443   23455555567788777876665555554333333223343  


Q ss_pred             CCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        313 KQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       313 ~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                             |+..++++-+..+.|+..++...    .....+. .......+++.+.++..|++....+.+..+++
T Consensus       238 -------p~~~~l~s~s~Dg~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          238 -------PTLPIIISGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             -------SSSSEEEEEETTSCEEEEETTTC----CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred             -------CCCCEEEEEcCCCeEEEEECCCC----ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence                   33334444444578888887654    2222222 23355688888877666555544444444443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.15  E-value=0.00033  Score=71.54  Aligned_cols=264  Identities=8%  Similarity=-0.105  Sum_probs=148.6

Q ss_pred             cce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEc--CCCCCcEEEEeC--CCC
Q psy14258        136 GTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKW--GATRPMLERSLL--DGT  206 (440)
Q Consensus       136 p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~--~~~~~~I~r~~~--dG~  206 (440)
                      ... ++.+.++.|.++    +.+.+..++|...+.+.........+++..|. ..+|+++.  +....+|++.+.  +|.
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence            445 778888888877    45666667887766654433345677888885 78888886  222247888999  777


Q ss_pred             CceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEecC---CC
Q psy14258        207 ERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWR---NQ  281 (440)
Q Consensus       207 ~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~---~~  281 (440)
                      .. .+..  ......+++.+.++.++++....+.+...++++...+.+.....    ..+++  ++..|+++...   ..
T Consensus       103 ~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          103 EQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             CE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEEETTEEEEEEEEETTEE
T ss_pred             cc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCe
Confidence            65 2221  12233445655676766665555656677887776666654321    34443  56677765432   25


Q ss_pred             eEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCcc--EEEEEEcCCCCCCceeeeeecCCC-C
Q psy14258        282 SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPA--IIKGLTFKRDGTTEQAIMPITDLK-R  357 (440)
Q Consensus       282 ~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~--~I~~i~~~~~~~~~~~~~~~~~~~-~  357 (440)
                      .|+.++..+|+...+.........+.+.          |+ ..|+.++ ..+  .|+.+++++.    ... .+.+.. .
T Consensus       176 ~i~~~d~~~g~~~~l~~~~~~~~~~~~S----------pDG~~l~~~~-~~~~~~i~~~d~~~~----~~~-~~~~~~~~  239 (582)
T 3o4h_A          176 SLFTSNLSSGGLRVFDSGEGSFSSASIS----------PGMKVTAGLE-TAREARLVTVDPRDG----SVE-DLELPSKD  239 (582)
T ss_dssp             EEEEEETTTCCCEEECCSSCEEEEEEEC----------TTSCEEEEEE-CSSCEEEEEECTTTC----CEE-ECCCSCSH
T ss_pred             EEEEEcCCCCCceEeecCCCccccceEC----------CCCCEEEEcc-CCCeeEEEEEcCCCC----cEE-EccCCCcC
Confidence            6888887766654332221112222222          34 3444333 334  7888888765    222 222221 2


Q ss_pred             ceEEE--------EEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCC--CeEEEEE
Q psy14258        358 PSVID--------YHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGI--GTINVAK  427 (440)
Q Consensus       358 p~~l~--------~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~--~~I~~~~  427 (440)
                      +.+++        +++++ ++|++-...+++....+ |...+    .....+..+++. .++.++......  ..|..++
T Consensus       240 ~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~~~~----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          240 FSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GERVE----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             HHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TEEEC----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             hhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CCeec----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence            23444        88887 78777666777766666 53211    112456778888 454444333222  3455555


Q ss_pred             eCC
Q psy14258        428 ISD  430 (440)
Q Consensus       428 ~~g  430 (440)
                      +++
T Consensus       313 ~~~  315 (582)
T 3o4h_A          313 SGE  315 (582)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.15  E-value=5.8e-05  Score=77.20  Aligned_cols=231  Identities=8%  Similarity=-0.099  Sum_probs=132.8

Q ss_pred             ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC--CC--CcEEEEEc--c
Q psy14258        174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT--YL--DFIDRINY--D  247 (440)
Q Consensus       174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~--~~--~~i~~~~~--d  247 (440)
                      ..++++.|...+|.++....  +.+....++|...+.+..........++..+. ..||+++.  +.  ..|+.++.  +
T Consensus        24 ~~~~~~~~DG~~la~~s~~~--g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSE--GSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEET--TEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred             hheeecCCCCCeEEEEEccC--CceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence            56777777656777765422  24444445766555443322234456667655 67888875  22  27788888  7


Q ss_pred             CCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEe
Q psy14258        248 GTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLY  326 (440)
Q Consensus       248 G~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~  326 (440)
                      |... .+.... -.....++.+++.++++....+.+...+..+|+...+.....  ..+.+.          |+ .+|++
T Consensus       101 g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~s----------pDG~~la~  166 (582)
T 3o4h_A          101 GEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSD----------IRGDLIAG  166 (582)
T ss_dssp             TCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEE----------EETTEEEE
T ss_pred             Cccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEEC----------CCCCEEEE
Confidence            7665 332221 112345666677655554444444455666665444432211  333332          33 34443


Q ss_pred             ecC---CccEEEEEEcCCCCCCceeeeeec-CCCCceEEEEEcCCCEEEEEECCCC--eEEEEecCCCCeEEEEECCCCC
Q psy14258        327 AKG---KPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSY--VIERRKMFGRGKEVVIDTGIYN  400 (440)
Q Consensus       327 ~~~---~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~--~I~r~~~~g~~~~~~~~~~~~~  400 (440)
                      +..   ....|+.+++++. ..   . .+. .......++|.|+++.|+.++ ..+  .|++.++++...+ ++...-..
T Consensus       167 ~~~~~~~~~~i~~~d~~~g-~~---~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~~d~~~~~~~-~~~~~~~~  239 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSG-GL---R-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVTVDPRDGSVE-DLELPSKD  239 (582)
T ss_dssp             EEEEETTEEEEEEEETTTC-CC---E-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred             EEEcCCCCeEEEEEcCCCC-Cc---e-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence            322   1256888887765 11   1 222 223356899999999998555 344  8999999986655 43322234


Q ss_pred             eeeEE--------EecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        401 VEGMA--------VDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       401 ~~glA--------vD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +.+++        +.+.+ .||++-...+++.+.++ |
T Consensus       240 ~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g  275 (582)
T 3o4h_A          240 FSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-G  275 (582)
T ss_dssp             HHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-T
T ss_pred             hhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-C
Confidence            55566        88877 78888766778888888 7

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.11  E-value=0.00086  Score=62.59  Aligned_cols=276  Identities=11%  Similarity=0.013  Sum_probs=148.2

Q ss_pred             eEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-ee
Q psy14258         62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RF  140 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-av  140 (440)
                      |..++.++.. ..........+.++.++. ++.||+....   |++++.++......         ..  ....... ++
T Consensus        42 l~~~d~~g~~-~~~~~~~~~~~~~~~~~~-~g~l~v~t~~---l~~~d~~g~~~~~~---------~~--~~~~~~~~~~  105 (330)
T 3hxj_A           42 LYAINTDGSV-KWFFKSGEIIECRPSIGK-DGTIYFGSDK---VYAINPDGTEKWRF---------DT--KKAIVSDFTI  105 (330)
T ss_dssp             TEEECTTSCE-EESSCGGGEEEECCEETT-TTEECCSSCE---EEEECCCGGGGGGS---------CC-------CCEEE
T ss_pred             EEEECCCCcE-EEEEecCCCcccceEEec-CCcEEEecCc---EEEECCCCcEEEEE---------EC--CCCcccCceE
Confidence            7777733332 211122222245666664 4677776543   66655433221111         01  1111233 55


Q ss_pred             eecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCcc
Q psy14258        141 PMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV  217 (440)
Q Consensus       141 D~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~  217 (440)
                      +  .++||+.   +.+.+.+.+|....... ........+++|+ .|.||+....   ..|.+.+.+|....... ....
T Consensus       106 ~--~~~l~v~t~~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~-~g~l~vgt~~---~~l~~~d~~g~~~~~~~-~~~~  177 (330)
T 3hxj_A          106 F--EDILYVTSMDGHLYAINTDGTEKWRFK-TKKAIYATPIVSE-DGTIYVGSND---NYLYAINPDGTEKWRFK-TNDA  177 (330)
T ss_dssp             E--TTEEEEECTTSEEEEECTTSCEEEEEE-CSSCCCSCCEECT-TSCEEEECTT---SEEEEECTTSCEEEEEE-CSSC
T ss_pred             E--CCEEEEEecCCEEEEEcCCCCEEEEEc-CCCceeeeeEEcC-CCEEEEEcCC---CEEEEECCCCCEeEEEe-cCCC
Confidence            5  7778877   67999998865543332 2223456678887 6888887754   58999998854433222 2223


Q ss_pred             CceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEE
Q psy14258        218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYET  296 (440)
Q Consensus       218 ~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~  296 (440)
                      ....+.+| .+++||++.   +.+..++.+|.........  .....+++++.+ .||++.. .+.|.++++ +|+....
T Consensus       178 ~~~~~~~d-~~g~l~v~t---~~l~~~d~~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~t~-~~gl~~~~~-~g~~~~~  249 (330)
T 3hxj_A          178 ITSAASIG-KDGTIYFGS---DKVYAINPDGTEKWNFYAG--YWTVTRPAISEDGTIYVTSL-DGHLYAINP-DGTEKWR  249 (330)
T ss_dssp             CCSCCEEC-TTCCEEEES---SSEEEECTTSCEEEEECCS--SCCCSCCEECTTSCEEEEET-TTEEEEECT-TSCEEEE
T ss_pred             ceeeeEEc-CCCEEEEEe---CEEEEECCCCcEEEEEccC--CcceeceEECCCCeEEEEcC-CCeEEEECC-CCCEeEE
Confidence            34567787 577888876   7898888655544333222  234667777766 8888764 567888875 4544332


Q ss_pred             EecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258        297 IANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL  375 (440)
Q Consensus       297 ~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~  375 (440)
                      ..... .+..+.+          ..++.|+++... +.+..++.++. ..  ....+. -....++..|.. +.||+.. 
T Consensus       250 ~~~~~~~~~~~~~----------~~~g~l~v~t~~-ggl~~~d~~g~-~~--~~~~~~-~~~~~~~~~d~~-g~l~~gt-  312 (330)
T 3hxj_A          250 FKTGKRIESSPVI----------GNTDTIYFGSYD-GHLYAINPDGT-EK--WNFETG-SWIIATPVIDEN-GTIYFGT-  312 (330)
T ss_dssp             EECSSCCCSCCEE----------CTTSCEEEECTT-CEEEEECTTSC-EE--EEEECS-SCCCSCCEECTT-CCEEEEC-
T ss_pred             eeCCCCccccceE----------cCCCeEEEecCC-CCEEEECCCCc-EE--EEEEcC-CccccceEEcCC-CEEEEEc-
Confidence            22111 1111211          235677777652 57888876443 11  111111 123445666654 5577764 


Q ss_pred             CCCeEEEEecC
Q psy14258        376 TSYVIERRKMF  386 (440)
Q Consensus       376 ~~~~I~r~~~~  386 (440)
                      ..+.++.....
T Consensus       313 ~~G~~~~~~~~  323 (330)
T 3hxj_A          313 RNGKFYALFNL  323 (330)
T ss_dssp             TTSCEEEEEC-
T ss_pred             CCCeEEEEecc
Confidence            45566555443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.11  E-value=0.00021  Score=68.54  Aligned_cols=281  Identities=9%  Similarity=0.021  Sum_probs=146.6

Q ss_pred             EEeeecccEEEEEEcC--CCCceeEEeCCCCCcceeeccccccceeeccccc-cce-eeeecCCcEEEe---ceEEEEec
Q psy14258         86 FCTHYMEHCMIAIDLN--LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTE-RFPMVTHKIVYP---EAIYFCTH  158 (440)
Q Consensus        86 i~~d~~~~~ly~~d~~--~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-p~~-avD~~~~~lY~~---~~I~~~~~  158 (440)
                      +++.+.+++|.++...  ...|+.+++++.....           +...... ..+ ++.+.++.|+++   ..|.+.++
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-----------l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~  109 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-----------LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDL  109 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-----------CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-----------eecCCCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence            4566777777666443  2345555554432211           1111111 223 456677778776   57999999


Q ss_pred             CCceEEEEEcCCCC-CceE--E----------------EEcCCCCeEEEEEc---CCCCCcEEEEeCCCCCceeEEecCc
Q psy14258        159 YMEHCMIAIDLNLS-KPRG--I----------------ALDPTSGYMFFTKW---GATRPMLERSLLDGTERFPMVTHKI  216 (440)
Q Consensus       159 dg~~~~~~~~~~~~-~P~~--i----------------avd~~~g~lywtd~---~~~~~~I~r~~~dG~~~~~l~~~~~  216 (440)
                      ++...+.+...... .|.|  |                ++.|....+.+...   ... ..|++.++++...+.+.. ..
T Consensus       110 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~-~~l~~~d~~~g~~~~~~~-~~  187 (396)
T 3c5m_A          110 ETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT-CRLIKVDIETGELEVIHQ-DT  187 (396)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC-EEEEEEETTTCCEEEEEE-ES
T ss_pred             CCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc-ceEEEEECCCCcEEeecc-CC
Confidence            88766555442211 1221  1                11232233333321   111 578888888765555543 23


Q ss_pred             cCceEEEEeC-CCCEEEEEeCCC-----CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecC--C--CeEE
Q psy14258        217 VYPYGVTVDF-PTKHVYWVDTYL-----DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWR--N--QSII  284 (440)
Q Consensus       217 ~~P~gl~vD~-~~~~ly~~d~~~-----~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~--~--~~i~  284 (440)
                      .....+++.+ .+++|+++....     ..|..+++++.....+........+..+++.  +..|+++...  .  ..|+
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence            4556788887 566677765332     4799999988776655442111234555665  3466665432  2  3388


Q ss_pred             EEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeec---------------CCccEEEEEEcCCCCCCcee
Q psy14258        285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAK---------------GKPAIIKGLTFKRDGTTEQA  348 (440)
Q Consensus       285 ~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~---------------~~~~~I~~i~~~~~~~~~~~  348 (440)
                      .++..+++...+.. ... .. ..+.+        ++ ..++++.               .....|+.+++++. ...  
T Consensus       268 ~~d~~~g~~~~l~~-~~~-~~-~~~s~--------~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~-~~~--  333 (396)
T 3c5m_A          268 KANPETLENEEVMV-MPP-CS-HLMSN--------FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK-SAQ--  333 (396)
T ss_dssp             EECTTTCCEEEEEE-CCS-EE-EEEEC--------SSSSEEEEEECCC----------CCCCCCEEEEEETTTT-BCC--
T ss_pred             EEECCCCCeEEeee-CCC-CC-CCccC--------CCCceEEEecCCcceeeccccccccCCCCcEEEEecccC-ceE--
Confidence            88876665443322 211 11 22221        02 2343321               12367888888765 211  


Q ss_pred             eeeecCCC----------CceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEE
Q psy14258        349 IMPITDLK----------RPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVV  393 (440)
Q Consensus       349 ~~~~~~~~----------~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~  393 (440)
                      .+......          ....+++.+.+++|+++...  ...|+++++++...+++
T Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~  390 (396)
T 3c5m_A          334 KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE  390 (396)
T ss_dssp             EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred             EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence            11111110          13456788988899988753  34689999887655443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.10  E-value=0.0044  Score=64.56  Aligned_cols=278  Identities=9%  Similarity=0.015  Sum_probs=160.4

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe--ceEEEEecC
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHY  159 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~d  159 (440)
                      +.++++++. +++.++..  +.|+..++.+.....           +...-..+.. ++.+.++.|+++  +.|.+.+++
T Consensus        84 v~~~~~spd-~~~~~~~~--~~i~~~d~~~~~~~~-----------l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~  149 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLFTQ--GGLVGFDMLARKVTY-----------LFDTNEETASLDFSPVGDRVAYVRNHNLYIARGG  149 (706)
T ss_dssp             CEEEEETTT-TEEEEEET--TEEEEEETTTTEEEE-----------EECCTTCCTTCEECTTSSEEEEEETTEEEEEECB
T ss_pred             ceeEEECCC-CeEEEEEC--CEEEEEECCCCceEE-----------ccCCcccccCCcCCCCCCEEEEEECCeEEEEecC
Confidence            888999998 77776643  677776665432211           1222334566 888888888777  789999988


Q ss_pred             C-----ceEEEEEcCCCC--------------CceEEEEcCCCCeEEEEEcCC---------------------------
Q psy14258        160 M-----EHCMIAIDLNLS--------------KPRGIALDPTSGYMFFTKWGA---------------------------  193 (440)
Q Consensus       160 g-----~~~~~~~~~~~~--------------~P~~iavd~~~g~lywtd~~~---------------------------  193 (440)
                      +     .....+......              .+.+++..|...+|+++....                           
T Consensus       150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence            6     544443332211              258999999777788775210                           


Q ss_pred             ---CCCcEEEEeCCCCCceeEEec--CccCceEEEEeCCCCEEEEEeCCC----CcEEEEEccCC-CcEEEecC--Cc-c
Q psy14258        194 ---TRPMLERSLLDGTERFPMVTH--KIVYPYGVTVDFPTKHVYWVDTYL----DFIDRINYDGT-DRKTIRKG--FP-V  260 (440)
Q Consensus       194 ---~~~~I~r~~~dG~~~~~l~~~--~~~~P~gl~vD~~~~~ly~~d~~~----~~i~~~~~dG~-~~~~i~~~--~~-~  260 (440)
                         ...+|...++++.....+...  .-..+..+++.+.+.+|+++....    ..|..++..+. ....+...  .. .
T Consensus       230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence               114688888876554333221  123467889998888898864322    37888888765 44444431  10 1


Q ss_pred             CceeeeeEec--C--EEEEEecC-CCeEEEEeccCCCceEEEecCCC-CeEEEEeccCCCCCCCCCc-eeEEeecCCc--
Q psy14258        261 QNLYDITVFE--N--NLFVTSWR-NQSIIRVNKFNSDDYETIANFSR-PFAIHIYHRQKQPDALKPS-TFLLYAKGKP--  331 (440)
Q Consensus       261 ~~p~gl~~~~--~--~ly~td~~-~~~i~~~~~~~g~~~~~~~~~~~-p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~--  331 (440)
                      ....++++..  +  .+|.++.. ...|+.++. +++....+..... ...+..+.         |+ ..|+++....  
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~-~~~~~~~l~~~~~~v~~~~~~s---------pdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT-TGRLIRQVTKGEWEVTNFAGFD---------PKGTRLYFESTEASP  379 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSSCEEEEEET-TSCEEEECCCSSSCEEEEEEEC---------TTSSEEEEEESSSCT
T ss_pred             CccCCceeecCCCCEEEEEEccCCccEEEEEEC-CCCEEEecCCCCeEEEeeeEEc---------CCCCEEEEEecCCCC
Confidence            1124456643  3  44444432 346777774 3444333332221 22222232         23 4566654433  


Q ss_pred             --cEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC---CCeEEEEecCCCC
Q psy14258        332 --AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT---SYVIERRKMFGRG  389 (440)
Q Consensus       332 --~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~---~~~I~r~~~~g~~  389 (440)
                        ..|+.+++++. .    ...+........+++.+.++++.++-..   ...|+..++++..
T Consensus       380 ~~~~l~~~d~~~~-~----~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          380 LERHFYCIDIKGG-K----TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             TCBEEEEEETTCC-C----CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ceEEEEEEEcCCC-C----ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence              37888887665 2    1122223346688999998887766322   2569999888754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.08  E-value=0.0084  Score=57.18  Aligned_cols=271  Identities=8%  Similarity=-0.042  Sum_probs=157.6

Q ss_pred             eeeecCCcEEEe----ceEEEEecCCce-------EEEEEcCCCCCceEEEEcCC----C---CeEEEEEcCCCCCcEEE
Q psy14258        139 RFPMVTHKIVYP----EAIYFCTHYMEH-------CMIAIDLNLSKPRGIALDPT----S---GYMFFTKWGATRPMLER  200 (440)
Q Consensus       139 avD~~~~~lY~~----~~I~~~~~dg~~-------~~~~~~~~~~~P~~iavd~~----~---g~lywtd~~~~~~~I~r  200 (440)
                      ++.|..+ ++++    +.|.+.+++...       ...+ .........+++.|.    .   .+|+.....   +.|..
T Consensus        21 ~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d---g~i~i   95 (397)
T 1sq9_A           21 SVSACNS-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFS---GDLLF   95 (397)
T ss_dssp             EEEECSS-EEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETT---SCEEE
T ss_pred             EEEecCC-eEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCC---CCEEE
Confidence            4444443 4444    688888887655       3333 334456789999985    3   345444443   47777


Q ss_pred             EeCCCCCc-----eeEEecC-----ccCceEEEEe----CCCCE-EEEEeCCCCcEEEEEccC-------CCcE-----E
Q psy14258        201 SLLDGTER-----FPMVTHK-----IVYPYGVTVD----FPTKH-VYWVDTYLDFIDRINYDG-------TDRK-----T  253 (440)
Q Consensus       201 ~~~dG~~~-----~~l~~~~-----~~~P~gl~vD----~~~~~-ly~~d~~~~~i~~~~~dG-------~~~~-----~  253 (440)
                      .+++....     ...+...     -.....+++.    +.+.. |+.+. ..+.|...++..       ....     .
T Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (397)
T 1sq9_A           96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD-VKGTTYIWKFHPFADESNSLTLNWSPTLE  174 (397)
T ss_dssp             EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE-TTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred             EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe-CCCcEEEEeCCccccccccceeeccCcce
Confidence            77765543     2222222     2567889998    77777 66654 456777777654       3333     3


Q ss_pred             Eec-----CCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEec-------CCCCeEEEEeccCCCCCCCCCc
Q psy14258        254 IRK-----GFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIAN-------FSRPFAIHIYHRQKQPDALKPS  321 (440)
Q Consensus       254 i~~-----~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~-------~~~p~~~~v~~~~~qp~~~~~~  321 (440)
                      +..     ......+..+++..+.++++-..++.|...+..+++....+..       ......+.+.          |+
T Consensus       175 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~----------~~  244 (397)
T 1sq9_A          175 LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS----------PQ  244 (397)
T ss_dssp             EEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC----------SS
T ss_pred             eeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC----------CC
Confidence            321     1112345677776543555555678888888776655554444       2233444433          23


Q ss_pred             eeEEeecCCc---cEEEEEEcCCCCCCceeeeeec--------------CCCCceEEEEEcCCCEEEEEECCCCeEEEEe
Q psy14258        322 TFLLYAKGKP---AIIKGLTFKRDGTTEQAIMPIT--------------DLKRPSVIDYHEKEEYIYYAELTSYVIERRK  384 (440)
Q Consensus       322 ~~l~~~~~~~---~~I~~i~~~~~~~~~~~~~~~~--------------~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~  384 (440)
                      +.++++-+..   +.|+.+++...    .....+.              .-.....+++.+.++.|+.+. ..+.|+..+
T Consensus       245 ~~~l~~~~~d~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd  319 (397)
T 1sq9_A          245 GSLLAIAHDSNSFGCITLYETEFG----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWD  319 (397)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTC----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEE
T ss_pred             CCEEEEEecCCCCceEEEEECCCC----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEE
Confidence            2233333334   67888887654    1222222              223567899999877665544 678899999


Q ss_pred             cCCCCeEEEEE------CC---------------CCCeeeEEEecCCC---------cEEEEeCCCCeEEEEEeCC
Q psy14258        385 MFGRGKEVVID------TG---------------IYNVEGMAVDWMAN---------NLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       385 ~~g~~~~~~~~------~~---------------~~~~~glAvD~~~~---------~lYwtd~~~~~I~~~~~~g  430 (440)
                      +........+.      ..               -..+..|++.+.++         +++.+-...+.|.+.++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            87544333333      22               46688999997663         5666666678999998865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.08  E-value=0.0016  Score=62.67  Aligned_cols=265  Identities=7%  Similarity=-0.074  Sum_probs=154.8

Q ss_pred             eEEEEecCCceEE-EEE-cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC----CCceeEEecCccCceEEEEe
Q psy14258        152 AIYFCTHYMEHCM-IAI-DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERFPMVTHKIVYPYGVTVD  225 (440)
Q Consensus       152 ~I~~~~~dg~~~~-~~~-~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG----~~~~~l~~~~~~~P~gl~vD  225 (440)
                      .|.+.+++..... .+. .........+++.|...+|+.....   +.|...+++.    ......+...-.....+++.
T Consensus        46 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~  122 (416)
T 2pm9_A           46 SLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN---GSLELYSTNEANNAINSMARFSNHSSSVKTVKFN  122 (416)
T ss_dssp             CCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS---SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred             eEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC---CeEEEeecccccccccchhhccCCccceEEEEEc
Confidence            5777777654321 111 1123567899999965566555543   5788888875    21222222223456789998


Q ss_pred             CCCCEEEEEeCCCCcEEEEEccCCC------cEEEe-c-CCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceE
Q psy14258        226 FPTKHVYWVDTYLDFIDRINYDGTD------RKTIR-K-GFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       226 ~~~~~ly~~d~~~~~i~~~~~dG~~------~~~i~-~-~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      +.+++++.+-...+.|...++....      ..... . .........+++..+  .++.+-...+.|...+..+++...
T Consensus       123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI  202 (416)
T ss_dssp             SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce
Confidence            7745555555566788888876543      11111 1 111234567777653  666776677888888887766555


Q ss_pred             EEecC------C-CCeEEEEeccCCCCCCCCCc-eeEEeecCCcc---EEEEEEcCCCCCCceeeeeecCCCCceEEEEE
Q psy14258        296 TIANF------S-RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPA---IIKGLTFKRDGTTEQAIMPITDLKRPSVIDYH  364 (440)
Q Consensus       296 ~~~~~------~-~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~---~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d  364 (440)
                      .+...      . ....+.+.          |+ ..++++-+..+   .|+..++....... .......-....++++.
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~----------~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~s  271 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWH----------PKNSTRVATATGSDNDPSILIWDLRNANTPL-QTLNQGHQKGILSLDWC  271 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEEC----------SSCTTEEEEEECCSSSCCCCEEETTSTTSCS-BCCCSCCSSCEEEEEEC
T ss_pred             EEeccccccccCCceEEEEEC----------CCCCCEEEEEECCCCCceEEEEeCCCCCCCc-EEeecCccCceeEEEeC
Confidence            44322      2 23344333          23 22333333334   78888876541110 11110122356789999


Q ss_pred             cCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        365 EKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       365 ~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +.++.++++-...++|+..++........+...-..+..+++.+.++.++.+-...++|.+.++..
T Consensus       272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            844445566557889999888754443334444467889999987767888877789999999876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.05  E-value=0.0042  Score=59.11  Aligned_cols=222  Identities=8%  Similarity=-0.079  Sum_probs=122.6

Q ss_pred             ceEEEEecCCceEEEE----EcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        151 EAIYFCTHYMEHCMIA----IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~----~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                      +.|.+-++.......+    .........++++.|...+|.-....   +.|...++........+...-.....+++.+
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---FSVKVWDLSQKAVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC---CeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence            5666666543322111    11123457899999954445444433   5788888765433333333344567888887


Q ss_pred             CCCEEEEEeCCCCcEEEEEccCCCcE-EEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCC-
Q psy14258        227 PTKHVYWVDTYLDFIDRINYDGTDRK-TIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSR-  302 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~dG~~~~-~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~-  302 (440)
                      .++.++.+-...+.|...++...... .+.....-..+..+++.  ++.++.+-..++.|...+..+++....+..... 
T Consensus       192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~  271 (357)
T 4g56_B          192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN  271 (357)
T ss_dssp             TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred             CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee
Confidence            77667666666677877776543322 22111112345677775  345666655678888888877777666554333 


Q ss_pred             CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEE
Q psy14258        303 PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIER  382 (440)
Q Consensus       303 p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r  382 (440)
                      ...+++. |.        +..++++-+..+.|+..+++..    +....+..-....+|+|.|.++.++.+-...++|+.
T Consensus       272 v~~l~~s-p~--------~~~~lasgs~D~~i~iwd~~~~----~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i  338 (357)
T 4g56_B          272 ITGLAYS-YH--------SSPFLASISEDCTVAVLDADFS----EVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH  338 (357)
T ss_dssp             EEEEEEC-SS--------SSCCEEEEETTSCEEEECTTSC----EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             EEEEEEc-CC--------CCCEEEEEeCCCEEEEEECCCC----cEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence            3445433 11        1223333333477888877654    333333333456799999865556666667888888


Q ss_pred             EecCCC
Q psy14258        383 RKMFGR  388 (440)
Q Consensus       383 ~~~~g~  388 (440)
                      -++...
T Consensus       339 W~~~~~  344 (357)
T 4g56_B          339 HHLPSE  344 (357)
T ss_dssp             EECC--
T ss_pred             EECCCC
Confidence            777543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.04  E-value=0.031  Score=62.24  Aligned_cols=341  Identities=7%  Similarity=-0.072  Sum_probs=184.4

Q ss_pred             eEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-ee
Q psy14258         62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RF  140 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-av  140 (440)
                      |...++........+..+...+.+++|++.++.|..+.. .+.|...++.....  +        ..+......... ++
T Consensus       639 i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~--~--------~~~~~~~~~v~~~~~  707 (1249)
T 3sfz_A          639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-DKKVKIWDSATGKL--V--------HTYDEHSEQVNCCHF  707 (1249)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCE--E--------EEEECCSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC-CCeEEEEECCCCce--E--------EEEcCCCCcEEEEEE
Confidence            777777655443333333334999999998776665554 46666655542211  1        012222223444 55


Q ss_pred             eecCCcEE-Ee----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-
Q psy14258        141 PMVTHKIV-YP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH-  214 (440)
Q Consensus       141 D~~~~~lY-~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-  214 (440)
                      .+.++..+ .+    +.|.+.+++...+...+........++++.|....|......   +.|...++........+.. 
T Consensus       708 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~  784 (1249)
T 3sfz_A          708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD---GTLRLWDVRSANERKSINVK  784 (1249)
T ss_dssp             CSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS---SEEEEEEGGGTEEEEEEECC
T ss_pred             ecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC---CeEEEEeCCCCcccceeccc
Confidence            44334333 33    678888988766655555555678899999955555444433   4777777754332222111 


Q ss_pred             C------------ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCC
Q psy14258        215 K------------IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQ  281 (440)
Q Consensus       215 ~------------~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~  281 (440)
                      .            ...+..+++.+.+..+..+.  .+.+...+....................+++..+ .+..+-...+
T Consensus       785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg  862 (1249)
T 3sfz_A          785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY  862 (1249)
T ss_dssp             CCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS
T ss_pred             ccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC
Confidence            0            11345677777777777765  4677777775444332222111334456666543 4444445567


Q ss_pred             eEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC----------------
Q psy14258        282 SIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT----------------  344 (440)
Q Consensus       282 ~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~----------------  344 (440)
                      .|...+..++.....+..-. ....+.+.          |++..+++-+..+.|+..++.....                
T Consensus       863 ~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~  932 (1249)
T 3sfz_A          863 CVELWNIDSRLKVADCRGHLSWVHGVMFS----------PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE  932 (1249)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred             eEEEEEcCCCceeeecCCCccceEEEEEC----------CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence            77777776655444443322 23344333          2222222222235555554332100                


Q ss_pred             -----------Cc-------eeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEE
Q psy14258        345 -----------TE-------QAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAV  406 (440)
Q Consensus       345 -----------~~-------~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAv  406 (440)
                                 ..       ........-.....+++.+.++.+...+ ..+.|+..++............-..+..+++
T Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~-~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~ 1011 (1249)
T 3sfz_A          933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD-EDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1011 (1249)
T ss_dssp             TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE-TTSCCEEEETTTTSCEEECCCCSSCCCCEEE
T ss_pred             CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc-CCCCEEEEEcCCCceeeecccCCCceEEEEE
Confidence                       00       0000001112456888999888776665 5778888888754433333334456788999


Q ss_pred             ecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        407 DWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       407 D~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .+.++.|..+ ...+.|.+.++..
T Consensus      1012 s~dg~~l~s~-~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A         1012 TADGKTLISS-SEDSVIQVWNWQT 1034 (1249)
T ss_dssp             CSSSSCEEEE-CSSSBEEEEETTT
T ss_pred             CCCCCEEEEE-cCCCEEEEEECCC
Confidence            8877666554 4467888888765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.96  E-value=0.0021  Score=61.54  Aligned_cols=165  Identities=9%  Similarity=-0.029  Sum_probs=105.5

Q ss_pred             eEEEEEee-e------cccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccceeeeecCCcEEEeceEE
Q psy14258         82 EAIYFCTH-Y------MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIY  154 (440)
Q Consensus        82 ~~~~i~~d-~------~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~avD~~~~~lY~~~~I~  154 (440)
                      ....+.+| .      .+..+|++|.....|..+++.....-.+          + ...-.|+.     .. .|      
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv----------~-~~~~~pd~-----~~-~~------  209 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNV----------T-HPTFKAER-----PT-KF------  209 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEE----------E-CGGGSCCS-----CE-EE------
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEE----------c-cCCCcccc-----Cc-ce------
Confidence            36777777 2      2688999999888887777754331111          1 11113321     00 11      


Q ss_pred             EEecCCceEEEEEcCCCCCceEEEEcCC----CCeEEEEEcCCCCCcEEEEeC----CCC--CceeEEecC--ccCceEE
Q psy14258        155 FCTHYMEHCMIAIDLNLSKPRGIALDPT----SGYMFFTKWGATRPMLERSLL----DGT--ERFPMVTHK--IVYPYGV  222 (440)
Q Consensus       155 ~~~~dg~~~~~~~~~~~~~P~~iavd~~----~g~lywtd~~~~~~~I~r~~~----dG~--~~~~l~~~~--~~~P~gl  222 (440)
                        ..+|.... +    ....-|||+.|.    .+.|||.-..+  .++++...    +.+  ...+.+...  .....++
T Consensus       210 --~i~G~~~~-~----~~Gi~gIaLsp~~~~~~~~LYf~plss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~  280 (381)
T 3q6k_A          210 --DYGGKEYE-F----KAGIFGITLGDRDSEGNRPAYYLAGSA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL  280 (381)
T ss_dssp             --EETTEEEE-E----CCCEEEEEECCCCTTSCCEEEEEESSC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred             --EECCEEeE-e----ccCceEEEecCCcCCCCeEEEEEECCC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence              12222211 1    134669999997    68999999876  47888763    222  112222222  2345578


Q ss_pred             EEeCCCCEEEEEeCCCCcEEEEEccC-----CCcEEEecCCccCceeeeeEec-CEEEEEec
Q psy14258        223 TVDFPTKHVYWVDTYLDFIDRINYDG-----TDRKTIRKGFPVQNLYDITVFE-NNLFVTSW  278 (440)
Q Consensus       223 ~vD~~~~~ly~~d~~~~~i~~~~~dG-----~~~~~i~~~~~~~~p~gl~~~~-~~ly~td~  278 (440)
                      ++|..++.||+++...+.|.+.+.++     .+..++.....+..|-++++.. ++||++..
T Consensus       281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            89878999999999999999999887     4567777755688999999974 48888763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.95  E-value=0.0013  Score=68.04  Aligned_cols=229  Identities=6%  Similarity=-0.116  Sum_probs=132.7

Q ss_pred             EEEEeecccceeeeEEEecC--C-Cce-eeeeec---ccceEEEEEeeecccEEEEEEcCC---------CCceeEEeCC
Q psy14258         49 HLYETIEAFWEECFGPMDIE--E-WDE-GLSFLT---FAQEAIYFCTHYMEHCMIAIDLNL---------SKPRGIALDP  112 (440)
Q Consensus        49 ll~s~~~~~~~~~I~~~~l~--~-~~~-~~~~~~---~~~~~~~i~~d~~~~~ly~~d~~~---------~~I~~~~~~~  112 (440)
                      |+++....   ..|..++++  + ... .+....   ....+.++++++.+++|+++....         ..|+..++++
T Consensus        94 la~~~~~~---~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           94 LVFTHFGD---QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             EEEEBTTT---CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             EEEEECCC---CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            56665422   228888887  3 333 232210   122378899999999998886541         3677777765


Q ss_pred             ------CCCcceeeccccccceee-ccccccce-eeeecCCcEEEe---c--------eEEEEecCC-c---eEEEEEcC
Q psy14258        113 ------TSGYMFFTKWGATRPMLE-RSLLDGTE-RFPMVTHKIVYP---E--------AIYFCTHYM-E---HCMIAIDL  169 (440)
Q Consensus       113 ------~~~~~~~~~~~~~~v~~~-~~~~~p~~-avD~~~~~lY~~---~--------~I~~~~~dg-~---~~~~~~~~  169 (440)
                            .....           +. .+-....+ ++.+.++.|+++   .        .|.+.++++ .   ..+.+...
T Consensus       171 ~~~~~~~~~~~-----------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          171 SAAADRSAVRE-----------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             TTTTCGGGSEE-----------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CccccCCceeE-----------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence                  22211           22 22234556 788888888887   2        588899984 3   44445443


Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC--ccC------ceEEEEeCCCCEEEEEeCCCCcE
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK--IVY------PYGVTVDFPTKHVYWVDTYLDFI  241 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~--~~~------P~gl~vD~~~~~ly~~d~~~~~i  241 (440)
                      ....+..++..|. |.||++.......+|++.++++...+.+....  ...      ...+++.+.+..+|.+.....+|
T Consensus       240 ~~~~~~~~~~spd-g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (662)
T 3azo_A          240 PEEAIAQAEWAPD-GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVL  318 (662)
T ss_dssp             TTBCEEEEEECTT-SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEE
T ss_pred             CCceEcceEECCC-CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEE
Confidence            3467888999885 55666653322248999998665544443321  111      24566654444444443334477


Q ss_pred             EEEEccCCCcEEEecCCccCceeee-eEecCEEEEEecCC---CeEEEEeccCCCce
Q psy14258        242 DRINYDGTDRKTIRKGFPVQNLYDI-TVFENNLFVTSWRN---QSIIRVNKFNSDDY  294 (440)
Q Consensus       242 ~~~~~dG~~~~~i~~~~~~~~p~gl-~~~~~~ly~td~~~---~~i~~~~~~~g~~~  294 (440)
                      +.++.++...+.+...  .....++ +.+++.++++-...   ..|+.++..+++..
T Consensus       319 ~~~d~~~~~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          319 GILDPESGELVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             EEEETTTTEEEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEECCCCcEEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            8888887665555332  2234456 67777666654332   36888877655433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.93  E-value=0.013  Score=54.15  Aligned_cols=281  Identities=9%  Similarity=0.002  Sum_probs=169.3

Q ss_pred             ccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        133 LLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      -..+.+ ++.+.+..|.-+   +.|.+-++........+.........+++.|...+|+-....   +.|...++.....
T Consensus        13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---~~i~vwd~~~~~~   89 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD---FRIRVFNYNTGEK   89 (304)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT---SEEEEEETTTCCE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC---CEEEEEECCCCcE
Confidence            345666 777776655544   688888887655443334344556788888865555555443   5888888865443


Q ss_pred             eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC-CcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEE
Q psy14258        209 FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT-DRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIR  285 (440)
Q Consensus       209 ~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~-~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~  285 (440)
                      ...+...-.....+++.+.+..|+-+ ...+.|..-++... .......+. ......+++..  +.++.+-...+.|..
T Consensus        90 ~~~~~~h~~~v~~~~~~~~~~~l~sg-s~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A           90 VVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEE-ETTSCEEEEEGGGTTEEEEEECCC-CSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             EEEEeCCCCcEEEEEEcCCCCEEEEE-CCCCeEEEEECCCCcchhhhhccc-CCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            33333333456789998776666544 45677888887644 233333321 23456777763  356666666788877


Q ss_pred             EeccCCCceEEEec-CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEE
Q psy14258        286 VNKFNSDDYETIAN-FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDY  363 (440)
Q Consensus       286 ~~~~~g~~~~~~~~-~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~  363 (440)
                      .+..++.....+.. ...+.....+.+.       +++.++++-+..+.|+..++...    .....+.+ ......++|
T Consensus       168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~h~~~v~~~~~  236 (304)
T 2ynn_A          168 WSLGQSTPNFTLTTGQERGVNYVDYYPL-------PDKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVF  236 (304)
T ss_dssp             EETTCSSCSEEEECCCTTCEEEEEECCS-------TTCCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEE
T ss_pred             EECCCCCccceeccCCcCcEEEEEEEEc-------CCCCEEEEEcCCCeEEEEeCCCC----ccceeeCCCCCCEEEEEE
Confidence            77765554443322 2222222222211       23323444344578888888655    22333333 234568999


Q ss_pred             EcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        364 HEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       364 d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .+.+..| .+-...++|..-++........+..+...+..+|+.+.++.+|.+-...+.+.++++..
T Consensus       237 ~p~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          237 HPTLPII-ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             CSSSSEE-EEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             CCCCCEE-EEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            9987744 55557889988888765544444556677888999888877766666667788877764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.93  E-value=0.0037  Score=69.65  Aligned_cols=343  Identities=8%  Similarity=-0.047  Sum_probs=187.5

Q ss_pred             eEEEEeecccceeeeEEEecCCCceeeeee-cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecccccc
Q psy14258         48 THLYETIEAFWEECFGPMDIEEWDEGLSFL-TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATR  126 (440)
Q Consensus        48 ~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~-~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~  126 (440)
                      .++.+....     |...++........+. .....+..+++++.++.+..+.. .+.|...++....  .+        
T Consensus       812 ~l~~~~~~~-----v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vwd~~~~~--~~--------  875 (1249)
T 3sfz_A          812 KIIVAAKNK-----VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRL--KV--------  875 (1249)
T ss_dssp             EEEEEETTE-----EEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS-SSCEEEEETTTTE--EE--------
T ss_pred             EEEEEcCCc-----EEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCc--ee--------
Confidence            344444455     7777766444331111 12223788899988776665554 4566555544221  10        


Q ss_pred             ceeeccccccce-eeeecCCcEEEe---ceEEEEecCCc------------------------------eEEEEE-----
Q psy14258        127 PMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYME------------------------------HCMIAI-----  167 (440)
Q Consensus       127 v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~------------------------------~~~~~~-----  167 (440)
                      ..+......+.+ ++.+.+..|+.+   +.|.+.++...                              ......     
T Consensus       876 ~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  955 (1249)
T 3sfz_A          876 ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ  955 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred             eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence            112222334555 666655544433   45555443210                              000000     


Q ss_pred             --cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258        168 --DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN  245 (440)
Q Consensus       168 --~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~  245 (440)
                        .........+++.|...++......   +.|...++............-.....+++.+.+..|..+ ...+.|...+
T Consensus       956 ~~~~~~~~i~~~~~sp~g~~l~~g~~~---g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~dg~i~vwd 1031 (1249)
T 3sfz_A          956 IDYLPEAQVSCCCLSPHLEYVAFGDED---GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS-SEDSVIQVWN 1031 (1249)
T ss_dssp             EEEECCSCEEEEEECTTSSEEEEEETT---SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEE-CSSSBEEEEE
T ss_pred             EEEcccCcEEEEEEcCCCCEEEEEcCC---CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEE-cCCCEEEEEE
Confidence              0012356788899866666666544   578888876544333333333456788998776666655 4567888888


Q ss_pred             ccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeE
Q psy14258        246 YDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFL  324 (440)
Q Consensus       246 ~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l  324 (440)
                      +.......+...  ......+++..+..+++-...+.|...+..+++....+..-. ....+.+.          |++.+
T Consensus      1032 ~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s----------~d~~~ 1099 (1249)
T 3sfz_A         1032 WQTGDYVFLQAH--QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS----------SDATK 1099 (1249)
T ss_dssp             TTTTEEECCBCC--SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEEC----------SSSSS
T ss_pred             CCCCceEEEecC--CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEEC----------CCCCE
Confidence            765443322211  234566777666445555567888888887777666554322 34444443          23223


Q ss_pred             EeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCe-EEE--------E
Q psy14258        325 LYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK-EVV--------I  394 (440)
Q Consensus       325 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~-~~~--------~  394 (440)
                      +++-+..+.|+..+++.. .   ....+.+ -....+++|.+.+..+..++ ..+.|+..++..... ..+        .
T Consensus      1100 l~s~s~d~~v~iwd~~~~-~---~~~~l~~h~~~v~~~~~s~dg~~lat~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1174 (1249)
T 3sfz_A         1100 FSSTSADKTAKIWSFDLL-S---PLHELKGHNGCVRCSAFSLDGILLATGD-DNGEIRIWNVSDGQLLHSCAPISVEEGT 1174 (1249)
T ss_dssp             CEEECCSSCCCEECSSSS-S---CSBCCCCCSSCEEEEEECSSSSEEEEEE-TTSCCCEEESSSSCCCCCCCCCC-----
T ss_pred             EEEEcCCCcEEEEECCCc-c---eeeeeccCCCcEEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEeccccccccc
Confidence            333333467777776554 1   1111222 22456899999887666554 567787777764221 111        1


Q ss_pred             ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        395 DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       395 ~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ...-..+.++++.+.++.|..++   +.|.+.++..
T Consensus      1175 ~~~~~~v~~l~fs~dg~~l~s~~---g~v~vwd~~~ 1207 (1249)
T 3sfz_A         1175 ATHGGWVTDVCFSPDSKTLVSAG---GYLKWWNVAT 1207 (1249)
T ss_dssp             --CCSCCCEEEECTTSSCEEEES---SSEEEBCSSS
T ss_pred             cccCceEEEEEECCCCCEEEECC---CeEEEEECCC
Confidence            12335688999999888887765   6888888654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.91  E-value=0.019  Score=58.09  Aligned_cols=274  Identities=10%  Similarity=-0.040  Sum_probs=155.9

Q ss_pred             ccccce-eeeecCCcEEEe--ceEEEEecCCc----eEEEEEcCCCCC-ceEEEEcC--CCCeEEEEEcCCCCCcEEEEe
Q psy14258        133 LLDGTE-RFPMVTHKIVYP--EAIYFCTHYME----HCMIAIDLNLSK-PRGIALDP--TSGYMFFTKWGATRPMLERSL  202 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~--~~I~~~~~dg~----~~~~~~~~~~~~-P~~iavd~--~~g~lywtd~~~~~~~I~r~~  202 (440)
                      -..+.. ++.+.++.|.++  +.|.+.+++..    .....+...... ...+++.|  ...+|......   +.|...+
T Consensus        18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d---g~v~vw~   94 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES---GKVIVWG   94 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT---SEEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCC---CEEEEEe
Confidence            345677 888888877766  78888888754    333334444456 89999999  66666665544   5777777


Q ss_pred             CCCC--------CceeEEecCccCceEEEEeCCCCEEEEEeCCC---CcEEEEEccCCCcEEEecCCccCceeeeeEecC
Q psy14258        203 LDGT--------ERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYL---DFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN  271 (440)
Q Consensus       203 ~dG~--------~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~---~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~  271 (440)
                      ++..        .....+...-.....+++.+.+..|+.+....   ..|...+  .........+ .......+++..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~~~~v~~~~~~~~  171 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-HSQRINACHLKQS  171 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-CSSCEEEEEECSS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec-CCccEEEEEECCC
Confidence            7321        11111222234578899998888888776543   2444333  2222222222 1334567777655


Q ss_pred             --EEEEEecCCCeEEEEeccCCCceEEEecCCC----CeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCC
Q psy14258        272 --NLFVTSWRNQSIIRVNKFNSDDYETIANFSR----PFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGT  344 (440)
Q Consensus       272 --~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~----p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~  344 (440)
                        .++.+-...+.|...+..+++....+..-..    ...+.+.          |+ +.++++-+..+.|+..++...  
T Consensus       172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~l~~~~~dg~i~vwd~~~~--  239 (615)
T 1pgu_A          172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS----------PDSGEFVITVGSDRKISCFDGKSG--  239 (615)
T ss_dssp             SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC----------STTCCEEEEEETTCCEEEEETTTC--
T ss_pred             CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC----------CCCCCEEEEEeCCCeEEEEECCCC--
Confidence              3666666678888777665555444433222    2334333          33 333443333478888887654  


Q ss_pred             Cceeeeee-----cCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC----CCCeeeEEEecCCCcEEE
Q psy14258        345 TEQAIMPI-----TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG----IYNVEGMAVDWMANNLYW  415 (440)
Q Consensus       345 ~~~~~~~~-----~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~----~~~~~glAvD~~~~~lYw  415 (440)
                        .....+     ..-....++++. .+..+ ++-...+.|...++............    -..+..+++.  .++...
T Consensus       240 --~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  313 (615)
T 1pgu_A          240 --EFLKYIEDDQEPVQGGIFALSWL-DSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRII  313 (615)
T ss_dssp             --CEEEECCBTTBCCCSCEEEEEES-SSSEE-EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEE
T ss_pred             --CEeEEecccccccCCceEEEEEc-CCCEE-EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEE
Confidence              222223     223355689998 55555 45446788988888743332222322    1344556664  334444


Q ss_pred             EeCCCCeEEEEEeCC
Q psy14258        416 TDAGIGTINVAKISD  430 (440)
Q Consensus       416 td~~~~~I~~~~~~g  430 (440)
                      +-...+.|.+.++..
T Consensus       314 ~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          314 SLSLDGTLNFYELGH  328 (615)
T ss_dssp             EEETTSCEEEEETTE
T ss_pred             EEECCCCEEEEECCC
Confidence            545567888888764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.022  Score=55.69  Aligned_cols=237  Identities=14%  Similarity=0.051  Sum_probs=137.0

Q ss_pred             CceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC--CCCceeEEe--cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC
Q psy14258        173 KPRGIALDPTSGYMFFTKWGATRPMLERSLLD--GTERFPMVT--HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG  248 (440)
Q Consensus       173 ~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d--G~~~~~l~~--~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG  248 (440)
                      ...++++.|...+|+.+-...  +.|...+++  +......+.  ..-..+..+++++.+..|+.++. .+.|..+++..
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~  180 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSD--KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINS  180 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGG--TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTS
T ss_pred             ceEEEEEcCCCCEEEEEECCC--CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCC
Confidence            478999999766666665333  467777766  433333332  22346789999988888888864 67788888644


Q ss_pred             CCcE-----EEecCCccCceeeeeEecC----EEEEEecCCCeEEEEeccCCCceEEEe-cC-CCCeEEEEeccCCCCCC
Q psy14258        249 TDRK-----TIRKGFPVQNLYDITVFEN----NLFVTSWRNQSIIRVNKFNSDDYETIA-NF-SRPFAIHIYHRQKQPDA  317 (440)
Q Consensus       249 ~~~~-----~i~~~~~~~~p~gl~~~~~----~ly~td~~~~~i~~~~~~~g~~~~~~~-~~-~~p~~~~v~~~~~qp~~  317 (440)
                      ....     .+...  ......+++..+    .++++-...+.|...+..+++....+. .- ..+..+.+.  .     
T Consensus       181 ~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d-----  251 (450)
T 2vdu_B          181 IPEEKFTQEPILGH--VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--K-----  251 (450)
T ss_dssp             CCCSSCCCCCSEEC--SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--S-----
T ss_pred             cccccccceeeecc--cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--C-----
Confidence            3221     11111  234567777653    344444456778777776666555432 22 233444433  1     


Q ss_pred             CCCceeEEeecCCccEEEEEEcCCCCCCceeeeee------------------------cCCCCceEEEEEcCCCEEEEE
Q psy14258        318 LKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI------------------------TDLKRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       318 ~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~------------------------~~~~~p~~l~~d~~~~~vy~~  373 (440)
                         ..+|+.+ +..+.|+..++... ... ..+..                        ..-....++++.+.++.+|.+
T Consensus       252 ---~~~l~s~-~~d~~v~vwd~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  325 (450)
T 2vdu_B          252 ---DYLLLSA-GGDDKIFAWDWKTG-KNL-STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF  325 (450)
T ss_dssp             ---TTEEEEE-ESSSEEEEEETTTC-CEE-EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred             ---CCEEEEE-eCCCeEEEEECCCC-cEe-eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence               1234433 33477887777654 110 01111                        001234588999989999988


Q ss_pred             ECCCCeEEEEec--CCC-CeEE--EEECCCCCeeeEEEecCCCcEEEEeCC-------CCeEEEEEeCC
Q psy14258        374 ELTSYVIERRKM--FGR-GKEV--VIDTGIYNVEGMAVDWMANNLYWTDAG-------IGTINVAKISD  430 (440)
Q Consensus       374 d~~~~~I~r~~~--~g~-~~~~--~~~~~~~~~~glAvD~~~~~lYwtd~~-------~~~I~~~~~~g  430 (440)
                      ....+.|+..++  ... ..+.  .+... ..+..+++++  +.++.+-..       .+.|+++.++.
T Consensus       326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             ETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             ECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEc
Confidence            867888888888  322 1121  22333 6789999986  446666322       34467776553

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.87  E-value=0.024  Score=55.22  Aligned_cols=245  Identities=10%  Similarity=0.033  Sum_probs=150.7

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC----------CCceeEEecCccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258        171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----------TERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF  240 (440)
Q Consensus       171 ~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG----------~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~  240 (440)
                      ...+..|++.|.++.++.+-...  +.|...+++.          ......+...-..+.+|++++.+..++.+-...+.
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~d--g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPS--SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSS--SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             CCcEEEEEECCCCCcEEEEECCC--CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            35688999999656666665433  5787777753          11111222223456889998777635555556778


Q ss_pred             EEEEEccCCCc--EE-----EecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCC---ceEEEecCC-CCeEEE
Q psy14258        241 IDRINYDGTDR--KT-----IRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSD---DYETIANFS-RPFAIH  307 (440)
Q Consensus       241 i~~~~~dG~~~--~~-----i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~---~~~~~~~~~-~p~~~~  307 (440)
                      |...++.....  ..     ...+ .......+++..  +.++.+....+.|...+..++.   ....+..-. .+..+.
T Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  284 (430)
T 2xyi_A          206 ICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS  284 (430)
T ss_dssp             EEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred             EEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence            88888764211  11     1111 123466777764  4788887778888888877653   333333222 344444


Q ss_pred             EeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        308 IYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       308 v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      +.          |+ .+++++-+..+.|...++...... -..+. ..-.....+++.+.++.++.+....++|...++.
T Consensus       285 ~~----------p~~~~~l~tg~~dg~v~vwd~~~~~~~-~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          285 FN----------PYSEFILATGSADKTVALWDLRNLKLK-LHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             EC----------SSCTTEEEEEETTSEEEEEETTCTTSC-SEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             eC----------CCCCCEEEEEeCCCeEEEEeCCCCCCC-eEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            33          22 345555455588999998764111 11111 1233567899999888888888788888888876


Q ss_pred             CCC-------------eEEEEEC-CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        387 GRG-------------KEVVIDT-GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       387 g~~-------------~~~~~~~-~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ...             ....... .-..+..+++.+.+..++.+....+.|.+.+++.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            411             1222222 2346899999987776888888889999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.86  E-value=0.017  Score=53.24  Aligned_cols=274  Identities=7%  Similarity=-0.019  Sum_probs=151.2

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.++++++.++.|.-... .+.|+...+......          ..+......... ++.+.++.|+.+   +.|.+.+
T Consensus        25 ~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFE----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSCEEEEETTTCCEE----------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEeeC-CCeEEEEeCCCcccc----------hhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            4899999988766655543 456655444322111          012222334555 666666555544   6888888


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY  237 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~  237 (440)
                      +....+...+.........+++.|...+|+.....   +.|...++........+...-.....+++.+.+..|+.+. .
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  169 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-Y  169 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT---SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe-C
Confidence            87655544444455667899999965555555544   5788888865443333332233467889987666666554 5


Q ss_pred             CCcEEEEEccCCC-cEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCC-CeEEE-EeccCC
Q psy14258        238 LDFIDRINYDGTD-RKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSR-PFAIH-IYHRQK  313 (440)
Q Consensus       238 ~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~-p~~~~-v~~~~~  313 (440)
                      .+.|...++.... ...+... .......+++..+ ...++-...+.|...+..+++....+..... ...+. .+.   
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---  245 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS---  245 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE---
T ss_pred             CCcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE---
Confidence            6678888875433 3333222 1222345666543 3344444567787777766654444332211 11110 110   


Q ss_pred             CCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEEC-CCCeEEEE
Q psy14258        314 QPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAEL-TSYVIERR  383 (440)
Q Consensus       314 qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~-~~~~I~r~  383 (440)
                           .+++.++++-+..+.|+..++...    .....+.+ -.....+++++.+..+.-+.. ..++|..-
T Consensus       246 -----~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          246 -----VTGGKWIVSGSEDNLVYIWNLQTK----EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             -----CSSSCEEEECCTTSCEEEEETTTC----CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             -----eCCCcEEEEECCCCEEEEEECCCc----hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence                 123334444444578888887655    22333332 234568999998887766543 34555443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.85  E-value=0.024  Score=54.81  Aligned_cols=271  Identities=6%  Similarity=-0.018  Sum_probs=149.5

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|++... +..+-...+.|...++.......          .+...-..+.. ++.+.++.|.-+   +.|.+.+
T Consensus       110 ~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~----------~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          110 PVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER----------TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             CEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE----------EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE----------EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            489999998755 44555555777766654332111          12222334556 776655533333   6788888


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY  237 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~  237 (440)
                      +.+..+...+........++++.|...+|+-....   +.|...++........+...-.....+.+.+.+..|. +-..
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~-s~s~  254 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA-SCSN  254 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE-EEET
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEE-EEcC
Confidence            87765543333344568899999954455444433   5788888864443333333334566788875554444 4445


Q ss_pred             CCcEEEEEccCCCcEEEecCCccCceeeeeEec---------------------CEEEEEecCCCeEEEEeccCCCceEE
Q psy14258        238 LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE---------------------NNLFVTSWRNQSIIRVNKFNSDDYET  296 (440)
Q Consensus       238 ~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~---------------------~~ly~td~~~~~i~~~~~~~g~~~~~  296 (440)
                      .+.|...++..........+. ......+++..                     +.+.++-...+.|...+..+++....
T Consensus       255 D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~  333 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  333 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            667777776544433322211 12234444432                     33555656677888888777765554


Q ss_pred             EecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEEEEEcCCCEEEEEE
Q psy14258        297 IANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHEKEEYIYYAE  374 (440)
Q Consensus       297 ~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~~~~~vy~~d  374 (440)
                      +.+-. ...++.+.          |++.++++-+..+.|+..++... .   ....+. .-....+++|.+.+..| ++-
T Consensus       334 ~~~h~~~v~~v~~~----------~~g~~l~s~s~D~~i~vwd~~~~-~---~~~~~~~h~~~v~~l~~~~~~~~l-~sg  398 (410)
T 1vyh_C          334 LVGHDNWVRGVLFH----------SGGKFILSCADDKTLRVWDYKNK-R---CMKTLNAHEHFVTSLDFHKTAPYV-VTG  398 (410)
T ss_dssp             EECCSSCEEEEEEC----------SSSSCEEEEETTTEEEEECCTTS-C---CCEEEECCSSCEEEEEECSSSSCE-EEE
T ss_pred             EECCCCcEEEEEEc----------CCCCEEEEEeCCCeEEEEECCCC-c---eEEEEcCCCCcEEEEEEcCCCCEE-EEE
Confidence            44322 23445433          23333444444578888887554 1   111222 22346689998877654 444


Q ss_pred             CCCCeEEEE
Q psy14258        375 LTSYVIERR  383 (440)
Q Consensus       375 ~~~~~I~r~  383 (440)
                      ...++|..-
T Consensus       399 s~D~~i~vW  407 (410)
T 1vyh_C          399 SVDQTVKVW  407 (410)
T ss_dssp             ETTSEEEEE
T ss_pred             eCCCcEEEE
Confidence            456666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.84  E-value=0.0096  Score=62.08  Aligned_cols=309  Identities=7%  Similarity=-0.063  Sum_probs=163.0

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeecc-c--cccce-eeeecCCcEEEe--------
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS-L--LDGTE-RFPMVTHKIVYP--------  150 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~-~--~~p~~-avD~~~~~lY~~--------  150 (440)
                      +..+++.+.++.+| + ...+.|+..++.......+          +... .  ..+.. ++.+.++.|.++        
T Consensus        19 ~~~~~~spdg~~~~-~-~~dg~i~~~d~~~g~~~~~----------~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~   86 (723)
T 1xfd_A           19 DPEAKWISDTEFIY-R-EQKGTVRLWNVETNTSTVL----------IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQ   86 (723)
T ss_dssp             CCCCCBSSSSCBCC-C-CSSSCEEEBCGGGCCCEEE----------ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred             ccccEEcCCCcEEE-E-eCCCCEEEEECCCCcEEEE----------eccccccccccceEEECCCCCEEEEEecCcccee
Confidence            45566776655333 3 3345666555543322111          1111 1  13677 888888877776        


Q ss_pred             ----ceEEEEecCCceEEEEEcCC--CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc--------
Q psy14258        151 ----EAIYFCTHYMEHCMIAIDLN--LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI--------  216 (440)
Q Consensus       151 ----~~I~~~~~dg~~~~~~~~~~--~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~--------  216 (440)
                          ..|.+.++++...+.+....  ...+..+++.|...+|.++..    ..|+..++++.....+.....        
T Consensus        87 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~----~~i~~~~~~~g~~~~~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           87 HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE----NNIYYCAHVGKQAIRVVSTGKEGVIYNGL  162 (723)
T ss_dssp             SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET----TEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred             ecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC----CeEEEEECCCCceEEEecCCCCCceECcc
Confidence                25778888876654443211  123678899997667777764    379999998766655544321        


Q ss_pred             ----------cCceEEEEeCCCCEEEEEeCCC---------------------------------CcEEEEEccCCCc-E
Q psy14258        217 ----------VYPYGVTVDFPTKHVYWVDTYL---------------------------------DFIDRINYDGTDR-K  252 (440)
Q Consensus       217 ----------~~P~gl~vD~~~~~ly~~d~~~---------------------------------~~i~~~~~dG~~~-~  252 (440)
                                ..+.++++.+.+.+|+++....                                 ..|...++.+... .
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~  242 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL  242 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred             cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence                      1236899998898888765321                                 1455666655442 3


Q ss_pred             EEecCCc----cCceeeeeEecC--EE-EEEec--CCCeEEEEeccCCCceEEEecCC-CC-----eEEEEeccCCCCCC
Q psy14258        253 TIRKGFP----VQNLYDITVFEN--NL-FVTSW--RNQSIIRVNKFNSDDYETIANFS-RP-----FAIHIYHRQKQPDA  317 (440)
Q Consensus       253 ~i~~~~~----~~~p~gl~~~~~--~l-y~td~--~~~~i~~~~~~~g~~~~~~~~~~-~p-----~~~~v~~~~~qp~~  317 (440)
                      .+.....    ......+++..|  .| ++++.  ....|+.++..+|+...++.... ..     ..+.+         
T Consensus       243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~---------  313 (723)
T 1xfd_A          243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVF---------  313 (723)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEE---------
T ss_pred             EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceE---------
Confidence            2221100    112234555444  44 33333  22457777776665544432111 00     11211         


Q ss_pred             CCCc-eeEEee-cCCcc------EEEEEE-cCCCCCCceeeeeec-CCCCce-EEEEEcCCCEEEEEECC----CCeEEE
Q psy14258        318 LKPS-TFLLYA-KGKPA------IIKGLT-FKRDGTTEQAIMPIT-DLKRPS-VIDYHEKEEYIYYAELT----SYVIER  382 (440)
Q Consensus       318 ~~~~-~~l~~~-~~~~~------~I~~i~-~~~~~~~~~~~~~~~-~~~~p~-~l~~d~~~~~vy~~d~~----~~~I~r  382 (440)
                       .|+ ..|+++ ....+      .|+.++ .++. ... ....+. +-.... .++++++++.||++...    ...|++
T Consensus       314 -spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          314 -SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS-SND-NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             -CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS-SSC-CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             -cCCCCeEEEEEecccCCCcceeEEEEEeccCCC-Ccc-ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence             133 345543 32223      577776 3433 100 011111 111222 36899999999988653    356888


Q ss_pred             EecCCCCeEEEEEC---CCCCeeeEEEecCCCcEEEEeCC
Q psy14258        383 RKMFGRGKEVVIDT---GIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       383 ~~~~g~~~~~~~~~---~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                      ++.+|......+..   .-..+..+++.+.++.|..+-.+
T Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~  430 (723)
T 1xfd_A          391 ANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (723)
T ss_dssp             ECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             EeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence            88877532222221   12346678888888877766443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.84  E-value=0.0026  Score=66.41  Aligned_cols=285  Identities=9%  Similarity=-0.008  Sum_probs=147.7

Q ss_pred             cce-eeeecCCcEEEe--ceEEEEecCCceEEEEEcCCCC---CceEEEEcCCCCeEEEEEcCCC------CCcEEEEeC
Q psy14258        136 GTE-RFPMVTHKIVYP--EAIYFCTHYMEHCMIAIDLNLS---KPRGIALDPTSGYMFFTKWGAT------RPMLERSLL  203 (440)
Q Consensus       136 p~~-avD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~~~~---~P~~iavd~~~g~lywtd~~~~------~~~I~r~~~  203 (440)
                      +.. ++.+.+..+|-.  +.|.+.++++.....++.....   .+.++++.|...+|.++.....      ...|+..++
T Consensus        19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~   98 (723)
T 1xfd_A           19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (723)
T ss_dssp             CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence            344 455445533322  6788888876665555543222   4889999997677777754221      157888898


Q ss_pred             CCCCceeEEecC--ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCc-----------------cCcee
Q psy14258        204 DGTERFPMVTHK--IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFP-----------------VQNLY  264 (440)
Q Consensus       204 dG~~~~~l~~~~--~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~-----------------~~~p~  264 (440)
                      ++...+.+....  -..+..+++.+.+.+|.++..  +.|...+.++.....+.....                 +....
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A           99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             CCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence            876554333221  112566788888888888765  578888887766655544210                 01224


Q ss_pred             eeeEec--CEEEEEecCC--C-------------------------------eEEEEeccCCCceEEEecCCCC--eEEE
Q psy14258        265 DITVFE--NNLFVTSWRN--Q-------------------------------SIIRVNKFNSDDYETIANFSRP--FAIH  307 (440)
Q Consensus       265 gl~~~~--~~ly~td~~~--~-------------------------------~i~~~~~~~g~~~~~~~~~~~p--~~~~  307 (440)
                      ++++..  ..|+++....  -                               .|+..+..+++....+.....+  ..-.
T Consensus       177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~  256 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (723)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence            566653  3666554321  1                               2333333333221111110000  0000


Q ss_pred             EeccCCCCCCCCCce-eEEeecC---CccEEEEEEcCCCCCCceeeeeec--CCCC--ceEEEEEcCCCEEEEE-ECCCC
Q psy14258        308 IYHRQKQPDALKPST-FLLYAKG---KPAIIKGLTFKRDGTTEQAIMPIT--DLKR--PSVIDYHEKEEYIYYA-ELTSY  378 (440)
Q Consensus       308 v~~~~~qp~~~~~~~-~l~~~~~---~~~~I~~i~~~~~~~~~~~~~~~~--~~~~--p~~l~~d~~~~~vy~~-d~~~~  378 (440)
                      +....-     .|++ +|++...   ....|+.+++++. .... .....  +...  +..++|.++++.|+++ ....+
T Consensus       257 ~~~~~~-----SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          257 ITMVKW-----ATSTKVAVTWLNRAQNVSILTLCDATTG-VCTK-KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             EEEEEE-----SSSSEEEEEEEETTSCEEEEEEEETTTC-CEEE-EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             eEEEEE-----eCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceE-EEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence            000000     2343 3433311   2246777777654 1111 11111  1111  2467899998888886 44444


Q ss_pred             ------eEEEEe-cCCCC---eEEEEECCCCCeee-EEEecCCCcEEEEeCC----CCeEEEEEeCC
Q psy14258        379 ------VIERRK-MFGRG---KEVVIDTGIYNVEG-MAVDWMANNLYWTDAG----IGTINVAKISD  430 (440)
Q Consensus       379 ------~I~r~~-~~g~~---~~~~~~~~~~~~~g-lAvD~~~~~lYwtd~~----~~~I~~~~~~g  430 (440)
                            .|+..+ .++..   ...+.. +-..... +++++.++.||++...    ...|..++++|
T Consensus       330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          330 GRGKFYHITVSSSQPNSSNDNIQSITS-GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             SSSCEEEEEEECSSCCSSSCCCCBSCC-SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred             CCcceeEEEEEeccCCCCccceeEeec-CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence                  788888 45544   333322 2222333 6899999999987543    33455555555

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.82  E-value=0.017  Score=55.44  Aligned_cols=240  Identities=10%  Similarity=0.006  Sum_probs=140.3

Q ss_pred             ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce----eEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC
Q psy14258        174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF----PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT  249 (440)
Q Consensus       174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~----~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~  249 (440)
                      +..++.+|....+.++-...  +.|...+++...+.    ..+...-.....+++.+.++.++.+-...+.|...++...
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~--g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSS--CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             CCcEEECCCeEEEEEEEcCC--CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            44566666333333332222  56777776543221    1111223356789998734444444445677888887543


Q ss_pred             --------CcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEE--ecCC-CCeEEEEeccCCCCC
Q psy14258        250 --------DRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETI--ANFS-RPFAIHIYHRQKQPD  316 (440)
Q Consensus       250 --------~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~--~~~~-~p~~~~v~~~~~qp~  316 (440)
                              ....+...  ......+++..+  .++++-..++.|...+..+++....+  .... ....+.+.       
T Consensus       115 ~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-------  185 (402)
T 2aq5_A          115 GLVLPLREPVITLEGH--TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-------  185 (402)
T ss_dssp             CCSSCBCSCSEEEECC--SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC-------
T ss_pred             CCccccCCceEEecCC--CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC-------
Confidence                    22333222  345667777654  46666666788888888777655555  2222 23444433       


Q ss_pred             CCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee-cCCC--CceEEEEEcCCCEEEEEE---CCCCeEEEEecCCCCe
Q psy14258        317 ALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TDLK--RPSVIDYHEKEEYIYYAE---LTSYVIERRKMFGRGK  390 (440)
Q Consensus       317 ~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~~~--~p~~l~~d~~~~~vy~~d---~~~~~I~r~~~~g~~~  390 (440)
                         |++.++++-+..+.|+.+++...    .....+ ....  .+..+++.+.+. ++.+-   ...+.|...++.....
T Consensus       186 ---~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          186 ---RDGALICTSCRDKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             ---TTSSCEEEEETTSEEEEEETTTT----EEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSS
T ss_pred             ---CCCCEEEEEecCCcEEEEeCCCC----ceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccC
Confidence               23323333334478888888655    222222 2222  367899998655 44444   5678899888875332


Q ss_pred             --EEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCe
Q psy14258        391 --EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFS  432 (440)
Q Consensus       391 --~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~  432 (440)
                        .......-..+..+++++.++.||.+....+.|.+.++...+
T Consensus       258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence              222223445688999999999999998778899999998633

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.81  E-value=0.033  Score=56.38  Aligned_cols=277  Identities=8%  Similarity=-0.073  Sum_probs=146.2

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccc-cce-eeee--cCCcEEEe---ceEEE
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTE-RFPM--VTHKIVYP---EAIYF  155 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-p~~-avD~--~~~~lY~~---~~I~~  155 (440)
                      +.++++++.++.|....  .+.|...++...... .     .....+...-.. +.. ++.+  .++.|+.+   +.|.+
T Consensus        21 v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~-~-----~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           21 TTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSK-V-----PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CCCCEEETTTTEEEEEE--TTEEEEEECCSSCCS-S-----CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             eeEEEECCCCCEEEEec--CCeEEEEECCCCCCc-c-----ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            78899999888888777  355665555422000 0     011112233334 567 8877  66655554   67888


Q ss_pred             EecCCc--------eEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-CCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        156 CTHYME--------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-RPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       156 ~~~dg~--------~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                      .++...        .....+........++++.|...+|+....... ...|...+ .+ .....+...-.....+++.+
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~-~~~~~~~~~~~~v~~~~~~~  170 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SG-NSLGEVSGHSQRINACHLKQ  170 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TC-CEEEECCSCSSCEEEEEECS
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CC-CcceeeecCCccEEEEEECC
Confidence            887422        222222334467889999997666666654321 02444443 12 22222222334577899987


Q ss_pred             CCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccC---ceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEE-e--
Q psy14258        227 PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQ---NLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETI-A--  298 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~---~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~-~--  298 (440)
                      .+..++.+-...+.|...+...........+. ..   ....+++..+  ..+++-...+.|...+..+++....+ .  
T Consensus       171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  249 (615)
T 1pgu_A          171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ  249 (615)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred             CCCcEEEEEeCCCcEEEEeCCCcceeeeeccc-CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc
Confidence            77645555556678888776543332222221 22   4567777643  44444445778888887777665554 2  


Q ss_pred             -cCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCC-----CCceEEEEEcCCCEEE
Q psy14258        299 -NFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL-----KRPSVIDYHEKEEYIY  371 (440)
Q Consensus       299 -~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~-----~~p~~l~~d~~~~~vy  371 (440)
                       ... ....+.+. .         ..+|+.+ +..+.|+..++...    .....+...     ..+.++.+. .++.++
T Consensus       250 ~~~~~~v~~~~~~-~---------~~~l~~~-~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  313 (615)
T 1pgu_A          250 EPVQGGIFALSWL-D---------SQKFATV-GADATIRVWDVTTS----KCVQKWTLDKQQLGNQQVGVVAT-GNGRII  313 (615)
T ss_dssp             BCCCSCEEEEEES-S---------SSEEEEE-ETTSEEEEEETTTT----EEEEEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred             cccCCceEEEEEc-C---------CCEEEEE-cCCCcEEEEECCCC----cEEEEEcCCCCcccCceeEEEeC-CCCeEE
Confidence             212 23344333 1         1234333 33477887877644    112121111     234456664 455444


Q ss_pred             EEECCCCeEEEEecCC
Q psy14258        372 YAELTSYVIERRKMFG  387 (440)
Q Consensus       372 ~~d~~~~~I~r~~~~g  387 (440)
                      .. ...+.|+..++..
T Consensus       314 ~~-~~~g~i~~~d~~~  328 (615)
T 1pgu_A          314 SL-SLDGTLNFYELGH  328 (615)
T ss_dssp             EE-ETTSCEEEEETTE
T ss_pred             EE-ECCCCEEEEECCC
Confidence            43 3566777776654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.031  Score=54.62  Aligned_cols=236  Identities=8%  Similarity=-0.043  Sum_probs=134.7

Q ss_pred             ccce-eeeecCCcEEEe----ceEEEEecC--Cc-eEEEEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC
Q psy14258        135 DGTE-RFPMVTHKIVYP----EAIYFCTHY--ME-HCMIAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG  205 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~----~~I~~~~~d--g~-~~~~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG  205 (440)
                      .+.+ ++.+.++.|+.+    +.|.+.++.  +. ....+.. ..-..+.+++++|...+|+.++..   +.|...++..
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~---g~v~~~~~~~  180 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF---GDVYSIDINS  180 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT---SEEEEEETTS
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC---CcEEEEecCC
Confidence            3566 788777777666    678888877  43 3333321 223568899999976777777654   5888888754


Q ss_pred             CCcee----EEecCccCceEEEEeCC---CCEEEEEeCCCCcEEEEEccCCC-cEEEecCCccCceeeeeEecCEEEEEe
Q psy14258        206 TERFP----MVTHKIVYPYGVTVDFP---TKHVYWVDTYLDFIDRINYDGTD-RKTIRKGFPVQNLYDITVFENNLFVTS  277 (440)
Q Consensus       206 ~~~~~----l~~~~~~~P~gl~vD~~---~~~ly~~d~~~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~~~ly~td  277 (440)
                      .....    .+......+..+++.+.   +..|+.++ ..+.|...++.... ...+..+. ...+..+++..+.++++-
T Consensus       181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~sd~~~l~s~  258 (450)
T 2vdu_B          181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-RDEHIKISHYPQCFIVDKWLFGH-KHFVSSICCGKDYLLLSA  258 (450)
T ss_dssp             CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-TTSCEEEEEESCTTCEEEECCCC-SSCEEEEEECSTTEEEEE
T ss_pred             cccccccceeeecccCceEEEEEcCCCCCCcEEEEEc-CCCcEEEEECCCCceeeeeecCC-CCceEEEEECCCCEEEEE
Confidence            43321    12222345778899876   44555554 56788888876443 33333221 334567777533344444


Q ss_pred             cCCCeEEEEeccCCCceEEEecCC--------------------------CCeEEEEeccCCCCCCCCC-ceeEEeecCC
Q psy14258        278 WRNQSIIRVNKFNSDDYETIANFS--------------------------RPFAIHIYHRQKQPDALKP-STFLLYAKGK  330 (440)
Q Consensus       278 ~~~~~i~~~~~~~g~~~~~~~~~~--------------------------~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~  330 (440)
                      ...+.|...+..+++....+....                          ...++...          | ..+|+++...
T Consensus       259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----------~~~~~l~~~~~~  328 (450)
T 2vdu_B          259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS----------KNLPFVAFFVEA  328 (450)
T ss_dssp             ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC----------SSSSEEEEEETT
T ss_pred             eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe----------CCCCEEEEEECC
Confidence            467888888887777655443100                          01112111          2 3567766534


Q ss_pred             ccEEEEEEc-CCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC-------CC--eEEEEecCC
Q psy14258        331 PAIIKGLTF-KRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT-------SY--VIERRKMFG  387 (440)
Q Consensus       331 ~~~I~~i~~-~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~-------~~--~I~r~~~~g  387 (440)
                      .+.|..+++ +..+..-.....+..-..+.++++++ + .++++-..       .+  .|++++..+
T Consensus       329 d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~  393 (450)
T 2vdu_B          329 TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNE  393 (450)
T ss_dssp             CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred             CCeEEEEEeccCCCCceeeccEeccCCceEEEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCC
Confidence            578888888 22211111222222235788999998 3 45555322       22  666666654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.80  E-value=0.023  Score=52.98  Aligned_cols=280  Identities=5%  Similarity=-0.086  Sum_probs=147.4

Q ss_pred             eEEEEEeeecccEEEEEEcC---CCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeec---CCcEEEe---c
Q psy14258         82 EAIYFCTHYMEHCMIAIDLN---LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMV---THKIVYP---E  151 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~---~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~---~~~lY~~---~  151 (440)
                      .+.+++|.+.+..+..+-..   .+.|+..++........         .....-..... ++.+.   ++.|+.+   +
T Consensus        20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL---------REIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE---------EEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce---------eeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            38999999987777766644   56676666654332111         01112223344 55554   2434444   6


Q ss_pred             eEEEEecCCce-EEEEEcCCCCCceEEE------EcCCCCeEEEEEcCCCCCcEEEEeCCCCC-ceeEEecC----ccCc
Q psy14258        152 AIYFCTHYMEH-CMIAIDLNLSKPRGIA------LDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHK----IVYP  219 (440)
Q Consensus       152 ~I~~~~~dg~~-~~~~~~~~~~~P~~ia------vd~~~g~lywtd~~~~~~~I~r~~~dG~~-~~~l~~~~----~~~P  219 (440)
                      .|.+.++.... ....+........+++      +.|....|+.....   +.|...++.... ....+...    ....
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD---GTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT---SCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC---CeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            78888887654 3333333445566664      45544455554443   578888887554 22222211    1134


Q ss_pred             eEEE----EeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec----CEEEEEecCCCeEEEEeccCC
Q psy14258        220 YGVT----VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE----NNLFVTSWRNQSIIRVNKFNS  291 (440)
Q Consensus       220 ~gl~----vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~----~~ly~td~~~~~i~~~~~~~g  291 (440)
                      ..++    +.+.+..|+.+ ...+.|...++...........  -.....+++..    +..+++-...+.|...+..++
T Consensus       168 ~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAG-YDNGDIKLFDLRNMALRWETNI--KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEE-ETTSEEEEEETTTTEEEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             EEEEEEeccCCCCCEEEEE-ccCCeEEEEECccCceeeecCC--CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            4555    44445555444 4567888888876554333222  23456777763    344444455777777776554


Q ss_pred             CceEEEe-----cCC-CCeEEEEeccCCCCCCCCCcee-EEeecCCccEEEEEEcCCCCCCc---------------eee
Q psy14258        292 DDYETIA-----NFS-RPFAIHIYHRQKQPDALKPSTF-LLYAKGKPAIIKGLTFKRDGTTE---------------QAI  349 (440)
Q Consensus       292 ~~~~~~~-----~~~-~p~~~~v~~~~~qp~~~~~~~~-l~~~~~~~~~I~~i~~~~~~~~~---------------~~~  349 (440)
                      +....+.     .-. ....+.+.          |++. ++++-+..+.|+..++.......               ...
T Consensus       245 ~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~  314 (357)
T 3i2n_A          245 HPTKGFASVSEKAHKSTVWQVRHL----------PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL  314 (357)
T ss_dssp             ETTTEEEEEEEECCSSCEEEEEEE----------TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred             CcccceeeeccCCCcCCEEEEEEC----------CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence            4332211     111 23344333          3432 45544445788777776431110               111


Q ss_pred             eeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        350 MPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       350 ~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      ..+. .-....+++|.+.+..+.++-...+.|+..++.
T Consensus       315 ~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          315 QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             eccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            1122 223456899999888777666667787777665

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.79  E-value=0.025  Score=53.10  Aligned_cols=273  Identities=8%  Similarity=-0.032  Sum_probs=154.0

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCce--EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEH--CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~--~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      .... ++.+.++.|+.+   +.|.+.++++..  ....+........++++.|...+|+.+...   +.|...++.....
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~   86 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD---RNAYVWTLKGRTW   86 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT---SCEEEEEEETTEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC---CeEEEEECCCCee
Confidence            3455 666666655555   688888888764  333333445678999999965555555543   4777777754432


Q ss_pred             eeEE--ecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc----EEEecCCccCceeeeeEecC-EEEEEecCCC
Q psy14258        209 FPMV--THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR----KTIRKGFPVQNLYDITVFEN-NLFVTSWRNQ  281 (440)
Q Consensus       209 ~~l~--~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~----~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~  281 (440)
                      ....  ...-..+..+++.+.+..|+.+. ..+.|...+++....    ..+..+ .......+++..+ ..+++-...+
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKP-IRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTT-CCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecc-cCCCeeEEEEcCCCCEEEEEcCCC
Confidence            2222  12234577899987777777765 456787777765542    222111 1334677777644 4444444567


Q ss_pred             eEEEEecc------------------CCCceEEEecCC-CCeEEEEeccCCCCCCCCCce-eEEeecCCccEEEEEEcCC
Q psy14258        282 SIIRVNKF------------------NSDDYETIANFS-RPFAIHIYHRQKQPDALKPST-FLLYAKGKPAIIKGLTFKR  341 (440)
Q Consensus       282 ~i~~~~~~------------------~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~-~l~~~~~~~~~I~~i~~~~  341 (440)
                      .|...+..                  .++....+.... ....+.+.          |++ +|+.+ +..+.|+..++..
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~l~~~-~~d~~i~i~d~~~  233 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS----------ANGSRVAWV-SHDSTVCLADADK  233 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC----------SSSSEEEEE-ETTTEEEEEEGGG
T ss_pred             CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC----------CCCCEEEEE-eCCCEEEEEECCC
Confidence            77766632                  222222222111 22333332          333 44444 3447888888865


Q ss_pred             CCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCC--CC-----------------------------
Q psy14258        342 DGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG--RG-----------------------------  389 (440)
Q Consensus       342 ~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g--~~-----------------------------  389 (440)
                      .    .....+.. ......+++++.+..+. +. ..+.|...++..  ..                             
T Consensus       234 ~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1k8k_C          234 K----MAVATLASETLPLLAVTFITESSLVA-AG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  307 (372)
T ss_dssp             T----TEEEEEECSSCCEEEEEEEETTEEEE-EE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             C----ceeEEEccCCCCeEEEEEecCCCEEE-EE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence            5    12222222 22457899998765444 43 667776666654  10                             


Q ss_pred             --e--------EEEEECCCCCeeeEEEecCCC---cEEEEeCCCCeEEEEEeC
Q psy14258        390 --K--------EVVIDTGIYNVEGMAVDWMAN---NLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       390 --~--------~~~~~~~~~~~~glAvD~~~~---~lYwtd~~~~~I~~~~~~  429 (440)
                        .        ..+....-..+..+++....+   ++..+-...+.|.+.+++
T Consensus       308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence              0        001012334678888665565   677777778889888875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.78  E-value=0.054  Score=56.56  Aligned_cols=270  Identities=11%  Similarity=0.056  Sum_probs=154.1

Q ss_pred             cce-eeeecCCcEEEe---c-----eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC------------
Q psy14258        136 GTE-RFPMVTHKIVYP---E-----AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT------------  194 (440)
Q Consensus       136 p~~-avD~~~~~lY~~---~-----~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~------------  194 (440)
                      ..+ ++.+.++.|.++   +     .|.+.++++.....+.... ....+++..|....||++.....            
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            445 788888888777   1     7999999876654332211 12567899887778888864421            


Q ss_pred             -CCcEEEEeCCCCCce-eEEecC---ccCceEEEEeCCCCEEEEEeC-C---CCcEEEEEccC------C--CcEEEecC
Q psy14258        195 -RPMLERSLLDGTERF-PMVTHK---IVYPYGVTVDFPTKHVYWVDT-Y---LDFIDRINYDG------T--DRKTIRKG  257 (440)
Q Consensus       195 -~~~I~r~~~dG~~~~-~l~~~~---~~~P~gl~vD~~~~~ly~~d~-~---~~~i~~~~~dG------~--~~~~i~~~  257 (440)
                       ..+|++.++++...+ .++...   -.+..++++.+.++.|+++.. .   ...|+.+++++      .  ..+.+...
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence             135999999765432 233222   224568899988998888753 2   46899999875      3  34555443


Q ss_pred             CccCceeeeeEecCEEEEEecC---CCeEEEEeccCCCc---eEEEecCC--CCeEEEEeccCCCCCCCCCceeEEeecC
Q psy14258        258 FPVQNLYDITVFENNLFVTSWR---NQSIIRVNKFNSDD---YETIANFS--RPFAIHIYHRQKQPDALKPSTFLLYAKG  329 (440)
Q Consensus       258 ~~~~~p~gl~~~~~~ly~td~~---~~~i~~~~~~~g~~---~~~~~~~~--~p~~~~v~~~~~qp~~~~~~~~l~~~~~  329 (440)
                      . -.....+.-+++.||+....   +..|+.++..+++.   ..++....  ...++.+.          +++.|+++..
T Consensus       286 ~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~lv~~~~  354 (710)
T 2xdw_A          286 F-EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV----------RSNFLVLCYL  354 (710)
T ss_dssp             S-SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE----------TTTEEEEEEE
T ss_pred             C-CcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE----------cCCEEEEEEE
Confidence            1 11222355567888877542   35788888766642   33433322  12233333          2344555433


Q ss_pred             C--ccEEEEEEc-CCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEE---CCCCeEEEEecCCCC--eEEEEECCCC--
Q psy14258        330 K--PAIIKGLTF-KRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAE---LTSYVIERRKMFGRG--KEVVIDTGIY--  399 (440)
Q Consensus       330 ~--~~~I~~i~~-~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d---~~~~~I~r~~~~g~~--~~~~~~~~~~--  399 (440)
                      .  ..+|+.+++ ++. .  ...++.. .....++++++.++.++++-   ..-.+|++.++.+..  .+++-...+.  
T Consensus       355 ~~g~~~l~~~~~~~g~-~--~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~~~  430 (710)
T 2xdw_A          355 HDVKNTLQLHDLATGA-L--LKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGI  430 (710)
T ss_dssp             ETTEEEEEEEETTTCC-E--EEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTTC
T ss_pred             ECCEEEEEEEECCCCC-E--EEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccCCc
Confidence            2  346777777 333 1  1122222 22345677788777887763   235689999997654  4555443322  


Q ss_pred             CeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258        400 NVEGMAVDWMANNLYWTDAGIGTINV  425 (440)
Q Consensus       400 ~~~glAvD~~~~~lYwtd~~~~~I~~  425 (440)
                      .+..+..    ..++++......|..
T Consensus       431 ~~~~~~~----~~~~~~~~dg~~i~~  452 (710)
T 2xdw_A          431 DASDYQT----VQIFYPSKDGTKIPM  452 (710)
T ss_dssp             CGGGEEE----EEEEEECTTSCEEEE
T ss_pred             CccccEE----EEEEEEcCCCCEEEE
Confidence            2334433    345565433334443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.78  E-value=0.0045  Score=57.60  Aligned_cols=255  Identities=12%  Similarity=0.061  Sum_probs=138.9

Q ss_pred             eeeecCCcEEEe--ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc
Q psy14258        139 RFPMVTHKIVYP--EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI  216 (440)
Q Consensus       139 avD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~  216 (440)
                      ++|. .+.||++  + +.+.+.+|......- .........+++  .|.||+....   +.|.+.+.+|....... ...
T Consensus        66 ~~~~-~g~l~v~t~~-l~~~d~~g~~~~~~~-~~~~~~~~~~~~--~~~l~v~t~~---~~l~~~d~~g~~~~~~~-~~~  136 (330)
T 3hxj_A           66 SIGK-DGTIYFGSDK-VYAINPDGTEKWRFD-TKKAIVSDFTIF--EDILYVTSMD---GHLYAINTDGTEKWRFK-TKK  136 (330)
T ss_dssp             EETT-TTEECCSSCE-EEEECCCGGGGGGSC-C-----CCEEEE--TTEEEEECTT---SEEEEECTTSCEEEEEE-CSS
T ss_pred             EEec-CCcEEEecCc-EEEECCCCcEEEEEE-CCCCcccCceEE--CCEEEEEecC---CEEEEEcCCCCEEEEEc-CCC
Confidence            5553 5557776  6 777777665421110 011112234454  6889887754   58999998855332222 222


Q ss_pred             cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe-cCEEEEEecCCCeEEEEeccCCCceE
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF-ENNLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~-~~~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      .....+.+| ..++||++. ..+.|..++.+|.........  ......+.++ ++.||++.   +.|++++ .+|+...
T Consensus       137 ~~~~~~~~~-~~g~l~vgt-~~~~l~~~d~~g~~~~~~~~~--~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~  208 (330)
T 3hxj_A          137 AIYATPIVS-EDGTIYVGS-NDNYLYAINPDGTEKWRFKTN--DAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKW  208 (330)
T ss_dssp             CCCSCCEEC-TTSCEEEEC-TTSEEEEECTTSCEEEEEECS--SCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEE
T ss_pred             ceeeeeEEc-CCCEEEEEc-CCCEEEEECCCCCEeEEEecC--CCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE
Confidence            223456776 466777764 457899998885443333222  2234456665 55888876   7888888 4554432


Q ss_pred             EEec-CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEE
Q psy14258        296 TIAN-FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAE  374 (440)
Q Consensus       296 ~~~~-~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d  374 (440)
                      .... ......+.+.          +++.|+++.. .+.+..++.++.    ...........+..+.+|. ++.||++.
T Consensus       209 ~~~~~~~~~~~~~~~----------~~g~l~v~t~-~~gl~~~~~~g~----~~~~~~~~~~~~~~~~~~~-~g~l~v~t  272 (330)
T 3hxj_A          209 NFYAGYWTVTRPAIS----------EDGTIYVTSL-DGHLYAINPDGT----EKWRFKTGKRIESSPVIGN-TDTIYFGS  272 (330)
T ss_dssp             EECCSSCCCSCCEEC----------TTSCEEEEET-TTEEEEECTTSC----EEEEEECSSCCCSCCEECT-TSCEEEEC
T ss_pred             EEccCCcceeceEEC----------CCCeEEEEcC-CCeEEEECCCCC----EeEEeeCCCCccccceEcC-CCeEEEec
Confidence            2221 1112222222          3456777654 267777765444    1111111111233455664 46687775


Q ss_pred             CCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        375 LTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       375 ~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                       ..+.|++++.+|...... ...-.....+++|. .++||+... .+.+......-
T Consensus       273 -~~ggl~~~d~~g~~~~~~-~~~~~~~~~~~~d~-~g~l~~gt~-~G~~~~~~~~~  324 (330)
T 3hxj_A          273 -YDGHLYAINPDGTEKWNF-ETGSWIIATPVIDE-NGTIYFGTR-NGKFYALFNLE  324 (330)
T ss_dssp             -TTCEEEEECTTSCEEEEE-ECSSCCCSCCEECT-TCCEEEECT-TSCEEEEEC--
T ss_pred             -CCCCEEEECCCCcEEEEE-EcCCccccceEEcC-CCEEEEEcC-CCeEEEEeccc
Confidence             456899999876433332 22334567788884 667888754 56677766554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.75  E-value=0.028  Score=52.54  Aligned_cols=140  Identities=9%  Similarity=0.015  Sum_probs=88.6

Q ss_pred             ccce-eeeecCCcEEEe------------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC--CCCcEE
Q psy14258        135 DGTE-RFPMVTHKIVYP------------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA--TRPMLE  199 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~------------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~--~~~~I~  199 (440)
                      .+.+ ++  .++.|+|+            ..|.+.++++...+.+     .....+++.|...+|+++....  ....|+
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            3445 56  56666664            3577888887765555     4577889999777888876432  114699


Q ss_pred             EEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC--------------------------CCcEEEEEccCCCc-E
Q psy14258        200 RSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY--------------------------LDFIDRINYDGTDR-K  252 (440)
Q Consensus       200 r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~--------------------------~~~i~~~~~dG~~~-~  252 (440)
                      ..++++...+.+.....  ...+++.+.+.+|+++...                          ...|..+++++... +
T Consensus        89 ~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           89 VADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            99998866655554332  7788998888888887522                          34688888877655 4


Q ss_pred             EEecCCccCceeeeeEecCEEEE-EecC--------CCeEEEEe
Q psy14258        253 TIRKGFPVQNLYDITVFENNLFV-TSWR--------NQSIIRVN  287 (440)
Q Consensus       253 ~i~~~~~~~~p~gl~~~~~~ly~-td~~--------~~~i~~~~  287 (440)
                      .+..  .  ....+++..+.+++ +...        ...|+.++
T Consensus       167 ~l~~--~--~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          167 EFEK--P--RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             EEEE--E--TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             eecC--C--CcccccCCCCeEEEEEecccccccccccccEEEeC
Confidence            4432  1  34455555543443 3321        33677777

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.028  Score=52.50  Aligned_cols=279  Identities=8%  Similarity=-0.049  Sum_probs=151.7

Q ss_pred             ceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEE
Q psy14258         81 QEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFC  156 (440)
Q Consensus        81 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~  156 (440)
                      ..+.++++++.++.|+.... .+.|...++....  .+        ..+...-..+.. ++.+.++.|+.+   +.|.+.
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~--~~--------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSK-DSSASVWYSLNGE--RL--------GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEES-SSCEEEEETTTCC--EE--------EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeC-CCEEEEEeCCCch--hh--------hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            34899999987666665554 4566655544221  11        112222334455 666655555544   689999


Q ss_pred             ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcC--CCCCcEEEEeCCCCCce-eEE----------ec--CccCceE
Q psy14258        157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG--ATRPMLERSLLDGTERF-PMV----------TH--KIVYPYG  221 (440)
Q Consensus       157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~--~~~~~I~r~~~dG~~~~-~l~----------~~--~~~~P~g  221 (440)
                      ++....+...+. .-..+..+++.|...+|+.+...  ...+.|...+++..... .+.          ..  .......
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            987665544444 44678999999966666655433  00135666665433211 111          11  1126778


Q ss_pred             EEEeCCCCEEEEEeCCCCcEEEEEccC-CCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEec
Q psy14258        222 VTVDFPTKHVYWVDTYLDFIDRINYDG-TDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIAN  299 (440)
Q Consensus       222 l~vD~~~~~ly~~d~~~~~i~~~~~dG-~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~  299 (440)
                      +++++.+..|+.+. ..+.|...++.. ......... ......++++..+ ..+++-...+.|...+..+++....+..
T Consensus       181 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  258 (369)
T 3zwl_B          181 AGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET  258 (369)
T ss_dssp             EEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC
Confidence            88887777776665 457888888765 222222222 1334667777644 3444444577888888877766555543


Q ss_pred             CCCCeEEEEeccCCCCCCCCCceeEEeecCCcc-------------EEEEEEcCCCCCCceeeeeec-CCCCceEEEEEc
Q psy14258        300 FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPA-------------IIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHE  365 (440)
Q Consensus       300 ~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~-------------~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~  365 (440)
                      ......+.+. +.        ..+++++.....             .++..++...    .....+. .......+++.+
T Consensus       259 ~~~~~~~~~~-~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~s~  325 (369)
T 3zwl_B          259 DCPLNTAVIT-PL--------KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----EEIGRVQGHFGPLNTVAISP  325 (369)
T ss_dssp             SSCEEEEEEC-SS--------SSEEEEEECCC-------------CEEEEEETTTC----CEEEEEECCSSCEEEEEECT
T ss_pred             CCCceeEEec-CC--------CceEEEeecCCCceEEEEecCCCcceeEEEecCCC----cchhheecccCcEEEEEECC
Confidence            2233334332 11        234444433211             4555554433    1122222 233566899998


Q ss_pred             CCCEEEEEECCCCeEEEEecCC
Q psy14258        366 KEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       366 ~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      .++.|.-+ ...+.|...+++.
T Consensus       326 ~~~~l~s~-~~dg~v~iw~~~~  346 (369)
T 3zwl_B          326 QGTSYASG-GEDGFIRLHHFEK  346 (369)
T ss_dssp             TSSEEEEE-ETTSEEEEEEECH
T ss_pred             CCCEEEEE-cCCCeEEEEECcc
Confidence            77755444 4567777776653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.72  E-value=0.034  Score=52.54  Aligned_cols=220  Identities=7%  Similarity=-0.090  Sum_probs=127.7

Q ss_pred             ceEEEEecCCceEE-EE---EcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258        151 EAIYFCTHYMEHCM-IA---IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF  226 (440)
Q Consensus       151 ~~I~~~~~dg~~~~-~~---~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~  226 (440)
                      +.|.+-+++..... +.   .........++++.|...+|.-....   +.|...++........+...-.....+++.+
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---ICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC---CeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            67888887654321 11   11234567899999954444444433   5788888764433222222234567888887


Q ss_pred             CCCEEEEEeCCCCcEEEEEccCCCc-EEEecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEecCCC-
Q psy14258        227 PTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIANFSR-  302 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~-  302 (440)
                      .+..++.+-...+.|..-++..... ..+........+..+++..  +.++.+-..++.|...+..+++....+..-.. 
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~  259 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQC  259 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSC
T ss_pred             CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCC
Confidence            7777777666677888888754433 3332211123456777763  36777766678888888877777665554332 


Q ss_pred             CeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEE
Q psy14258        303 PFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIE  381 (440)
Q Consensus       303 p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~  381 (440)
                      ...+.+.          |+ ..++++-+..+.|+..++...    +.......-....+++|.|.++.++.+-...++|.
T Consensus       260 v~~v~fs----------p~g~~~lasgs~D~~i~vwd~~~~----~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~  325 (344)
T 4gqb_B          260 VTGLVFS----------PHSVPFLASLSEDCSLAVLDSSLS----ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVV  325 (344)
T ss_dssp             EEEEEEC----------SSSSCCEEEEETTSCEEEECTTCC----EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             EEEEEEc----------cCCCeEEEEEeCCCeEEEEECCCC----cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence            3444332          22 223443333477877776544    22222222335678999998887777766678887


Q ss_pred             EEecCC
Q psy14258        382 RRKMFG  387 (440)
Q Consensus       382 r~~~~g  387 (440)
                      .-++..
T Consensus       326 ~w~v~~  331 (344)
T 4gqb_B          326 HHVVPT  331 (344)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            777654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.72  E-value=0.035  Score=52.69  Aligned_cols=279  Identities=11%  Similarity=-0.047  Sum_probs=157.3

Q ss_pred             ccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEc--CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258        135 DGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAID--LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  207 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~--~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~  207 (440)
                      .... ++.+.+.+++++    +.|.+.++++......+.  .......++++.|.++.++.+-...  +.|...++.+..
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~  152 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR--GATTLRDFSGSV  152 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT--TEEEEEETTSCE
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC--CEEEEEECCCCc
Confidence            3445 666655345555    689999998665554443  2446788999999555555544333  589999998754


Q ss_pred             ceeEEecC--ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-E-EEEEecCCCeE
Q psy14258        208 RFPMVTHK--IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-N-LFVTSWRNQSI  283 (440)
Q Consensus       208 ~~~l~~~~--~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~-ly~td~~~~~i  283 (440)
                      ...+....  ......+++.+.+..|+.+. ..+.|...++++.....+...  ......+++..+ . ++++-...+.|
T Consensus       153 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~i  229 (383)
T 3ei3_B          153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGD-STGRLLLLGLDGHEIFKEKLH--KAKVTHAEFNPRCDWLMATSSVDATV  229 (383)
T ss_dssp             EEEEECCCCSSCCEEEEEEETTTTEEEEEE-TTSEEEEEETTSCEEEEEECS--SSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             eEEEeccCCCCCCeEEEEECCCCCEEEEEC-CCCCEEEEECCCCEEEEeccC--CCcEEEEEECCCCCCEEEEEeCCCEE
Confidence            44333221  24478899998777776665 567898888877655555432  345677887765 3 66666667888


Q ss_pred             EEEeccCCC----ceEEEecCCCCeEEEEeccCCCCCCCCC-ceeEEeecCCccEEEEEEcCCCCCCceeeee---ecCC
Q psy14258        284 IRVNKFNSD----DYETIANFSRPFAIHIYHRQKQPDALKP-STFLLYAKGKPAIIKGLTFKRDGTTEQAIMP---ITDL  355 (440)
Q Consensus       284 ~~~~~~~g~----~~~~~~~~~~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~---~~~~  355 (440)
                      ...+..+++    ....+........+.+.          | ++.++++-+..+.|+..++............   ....
T Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s----------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          230 KLWDLRNIKDKNSYIAEMPHEKPVNAAYFN----------PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             EEEEGGGCCSTTCEEEEEECSSCEEEEEEC----------TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             EEEeCCCCCcccceEEEecCCCceEEEEEc----------CCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            888876632    22233222233444433          3 3333334344578888888654111111100   0000


Q ss_pred             CCceEEEEEcCCCEEEE--------EECCCCeEEEEecCCCCeEEEEE-CC-CCCeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258        356 KRPSVIDYHEKEEYIYY--------AELTSYVIERRKMFGRGKEVVID-TG-IYNVEGMAVDWMANNLYWTDAGIGTINV  425 (440)
Q Consensus       356 ~~p~~l~~d~~~~~vy~--------~d~~~~~I~r~~~~g~~~~~~~~-~~-~~~~~glAvD~~~~~lYwtd~~~~~I~~  425 (440)
                      ..+....+.+.+..+..        +-...+.|+..++........+. .+ -..+..+++.+.++.|.-..  .+.|.+
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s--d~~i~i  377 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM--GFNILI  377 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE--TTEEEE
T ss_pred             ccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec--CCcEEE
Confidence            11222233333333322        22356778888876433322222 11 23455569988777665553  588999


Q ss_pred             EEeCC
Q psy14258        426 AKISD  430 (440)
Q Consensus       426 ~~~~g  430 (440)
                      .+++.
T Consensus       378 w~~~~  382 (383)
T 3ei3_B          378 WNRED  382 (383)
T ss_dssp             EECC-
T ss_pred             EecCC
Confidence            88864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.71  E-value=0.032  Score=52.12  Aligned_cols=293  Identities=4%  Similarity=-0.057  Sum_probs=148.5

Q ss_pred             eEEEEEeeec---ccEEEEEEcCCCCceeEEeCCCC-Ccceeeccccccceeeccccccce-eeeecCC---cEEEe---
Q psy14258         82 EAIYFCTHYM---EHCMIAIDLNLSKPRGIALDPTS-GYMFFTKWGATRPMLERSLLDGTE-RFPMVTH---KIVYP---  150 (440)
Q Consensus        82 ~~~~i~~d~~---~~~ly~~d~~~~~I~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~---~lY~~---  150 (440)
                      .+.+++|++.   ...++++-...+.|...++.... +..+....      .......... ++.+...   .++++   
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV------DADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE------CSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc------ccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            3889999873   33334444344566666654221 11110000      0001123455 6665532   34444   


Q ss_pred             -ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE---ecCccCceEEEEeC
Q psy14258        151 -EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV---THKIVYPYGVTVDF  226 (440)
Q Consensus       151 -~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~---~~~~~~P~gl~vD~  226 (440)
                       +.|.+.++........+........++++.|..+.++.+-...  +.|...++........+   ...-..+..+++++
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD--HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT--SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC--CeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence             6899998875554444444557789999999555555554333  58888888754443333   12344678899987


Q ss_pred             CCCEEEEEeCCCCcEEEEEccCCCcE-EEe--------------------------cCCccCceeeeeEecCEEEEEecC
Q psy14258        227 PTKHVYWVDTYLDFIDRINYDGTDRK-TIR--------------------------KGFPVQNLYDITVFENNLFVTSWR  279 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~dG~~~~-~i~--------------------------~~~~~~~p~gl~~~~~~ly~td~~  279 (440)
                      .+..|+.+. ..+.|...++...... .+.                          ..........+++.++.| .+-..
T Consensus       172 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~  249 (366)
T 3k26_A          172 LGEKIMSCG-MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLI-LSKSC  249 (366)
T ss_dssp             TSSEEEEEE-TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEE-EEECS
T ss_pred             CCCEEEEec-CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEE-EEEec
Confidence            777766664 4567877776532111 000                          000122345666665544 44445


Q ss_pred             CCeEEEEeccCCCceE-EEecCC-CCeEEEEeccCCCCCCC---CCc--eeEEeecCCccEEEEEEcCCCCCCceeeeee
Q psy14258        280 NQSIIRVNKFNSDDYE-TIANFS-RPFAIHIYHRQKQPDAL---KPS--TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI  352 (440)
Q Consensus       280 ~~~i~~~~~~~g~~~~-~~~~~~-~p~~~~v~~~~~qp~~~---~~~--~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~  352 (440)
                      .+.|...+..++.... .+.... ...-+..+.....+...   .|+  +.++++-+..+.|+..++............+
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  329 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL  329 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence            6777777765543311 000000 01111111111111000   122  3344444445889888887651111122233


Q ss_pred             cC---CCCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        353 TD---LKRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       353 ~~---~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                      ..   ......++|.+.++.|..+. ..+.|+.-++
T Consensus       330 ~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~  364 (366)
T 3k26_A          330 THHKCGAAIRQTSFSRDSSILIAVC-DDASIWRWDR  364 (366)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEEC
T ss_pred             cccccCCceEEEEeCCCCCeEEEEe-CCCEEEEEEe
Confidence            33   24567899999877665544 5667766554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.71  E-value=0.036  Score=52.64  Aligned_cols=283  Identities=8%  Similarity=-0.063  Sum_probs=152.9

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFC  156 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~  156 (440)
                      .+.++++++.+..++.+-...+.|...++........        ......-..+.+ ++.+.+++++++    +.|.+.
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF--------IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE--------ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee--------eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence            3899999988634555555557777666653332111        000012233444 554423344444    789999


Q ss_pred             ecCCceEEEEEcCC--CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEE
Q psy14258        157 THYMEHCMIAIDLN--LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV  234 (440)
Q Consensus       157 ~~dg~~~~~~~~~~--~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~  234 (440)
                      ++.+.....+....  ......+++.|....|+.....   +.|...++++.....+. ........+++.+.+..++.+
T Consensus       147 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          147 DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST---GRLLLLGLDGHEIFKEK-LHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             ETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT---SEEEEEETTSCEEEEEE-CSSSCEEEEEECSSCTTEEEE
T ss_pred             ECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC---CCEEEEECCCCEEEEec-cCCCcEEEEEECCCCCCEEEE
Confidence            99986665554422  2458899999966555555544   58999999765444332 234567889999777745555


Q ss_pred             eCCCCcEEEEEccC----CCcEEEecCCccCceeeeeEec-C-EEEEEecCCCeEEEEeccCCCceEEEecCC-------
Q psy14258        235 DTYLDFIDRINYDG----TDRKTIRKGFPVQNLYDITVFE-N-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-------  301 (440)
Q Consensus       235 d~~~~~i~~~~~dG----~~~~~i~~~~~~~~p~gl~~~~-~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-------  301 (440)
                      -...+.|...++..    .........  ......+++.. + .++++-...+.|...+..+++....+....       
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  300 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEMPH--EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL  300 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEEEC--SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTS
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEecC--CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccc
Confidence            55677888888763    222222221  34567788765 3 444444557888888877766544322110       


Q ss_pred             CCeEEEEeccCCCCC--CCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC--C-CCceEEEEEcCCCEEEEEECC
Q psy14258        302 RPFAIHIYHRQKQPD--ALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD--L-KRPSVIDYHEKEEYIYYAELT  376 (440)
Q Consensus       302 ~p~~~~v~~~~~qp~--~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~--~-~~p~~l~~d~~~~~vy~~d~~  376 (440)
                      .+... .+++.....  ...|++.+  +-+..+.|+..++...    .....+.+  . .....++|.+.+..|.-+.  
T Consensus       301 ~~~~~-~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~----~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s--  371 (383)
T 3ei3_B          301 TPIKA-TWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG----GLVHQLRDPNAAGIISLNKFSPTGDVLASGM--  371 (383)
T ss_dssp             CCCCC-EECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC----CEEEEECBTTBCSCCCEEEECTTSSEEEEEE--
T ss_pred             cceEE-eccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC----ceeeeecCCCCCceEEEEEEecCccEEEEec--
Confidence            11111 111100000  00011111  2223467777777544    22222221  1 2234568999888665553  


Q ss_pred             CCeEEEEecCC
Q psy14258        377 SYVIERRKMFG  387 (440)
Q Consensus       377 ~~~I~r~~~~g  387 (440)
                      .+.|..-+++.
T Consensus       372 d~~i~iw~~~~  382 (383)
T 3ei3_B          372 GFNILIWNRED  382 (383)
T ss_dssp             TTEEEEEECC-
T ss_pred             CCcEEEEecCC
Confidence            67777776653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.71  E-value=0.041  Score=53.18  Aligned_cols=283  Identities=10%  Similarity=-0.012  Sum_probs=156.5

Q ss_pred             ccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        133 LLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      ...+.. ++.+.+..|.-+   +.|.+.++........+........+++++|. |.++.+-...  +.|...++.+...
T Consensus       108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D--~~i~iwd~~~~~~  184 (410)
T 1vyh_C          108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSAD--MTIKLWDFQGFEC  184 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETT--SCCCEEETTSSCE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCC--CeEEEEeCCCCce
Confidence            334555 676655533333   68888888755444334444567889999985 5444443332  4677777765433


Q ss_pred             eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEe
Q psy14258        209 FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVN  287 (440)
Q Consensus       209 ~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~  287 (440)
                      ...+...-.....+++.+.+..|+-+. ..+.|...++..........+. ......+++..+ .++.+-...+.|...+
T Consensus       185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s-~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~g~~l~s~s~D~~v~vwd  262 (410)
T 1vyh_C          185 IRTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTVRVWV  262 (410)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEEEeCC-CccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            222222233567888987666665554 5677888877543332222221 233455666544 5666666677787777


Q ss_pred             ccCCCceEEEecCCC-CeEEEEeccCCCC------CC-----CCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-
Q psy14258        288 KFNSDDYETIANFSR-PFAIHIYHRQKQP------DA-----LKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-  354 (440)
Q Consensus       288 ~~~g~~~~~~~~~~~-p~~~~v~~~~~qp------~~-----~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-  354 (440)
                      ..+++....+..-.. ...+.+ +|....      ..     ....+.++++-+..+.|+..++...    .....+.+ 
T Consensus       263 ~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h  337 (410)
T 1vyh_C          263 VATKECKAELREHRHVVECISW-APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVGH  337 (410)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEE-CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEEEEEECC
T ss_pred             CCCCceeeEecCCCceEEEEEE-cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC----ceEEEEECC
Confidence            766655444433222 223332 221100      00     0011233444444578888887655    22223332 


Q ss_pred             CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258        355 LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAK  427 (440)
Q Consensus       355 ~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~  427 (440)
                      -....+++|++.+..|+ +-...++|+.-++........+...-..+..|++.+.+..| .+-...++|.+.+
T Consensus       338 ~~~v~~v~~~~~g~~l~-s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~  408 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE  408 (410)
T ss_dssp             SSCEEEEEECSSSSCEE-EEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred             CCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEe
Confidence            23456899999877665 44467889888886543333334445678899998755544 4444456666654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.66  E-value=0.034  Score=51.10  Aligned_cols=276  Identities=9%  Similarity=0.008  Sum_probs=157.8

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCcee
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP  210 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~  210 (440)
                      .+.. ++.+.++.|+.+   +.|.+.+.........+........+++..|...+|+.....   +.|...+++......
T Consensus        25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~  101 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD---KTLKIWDVSSGKCLK  101 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEE
T ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC---CEEEEEECCCCcEEE
Confidence            4555 666655544444   678887776544444444445668899999965555555444   578888886544333


Q ss_pred             EEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEecc
Q psy14258        211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKF  289 (440)
Q Consensus       211 l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~  289 (440)
                      .+.........+++.+.+..|+.+. ..+.|...++........... .......+++..+ .++.+-...+.|...+..
T Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~  179 (312)
T 4ery_A          102 TLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  179 (312)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCEEEEEecC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            3333334567888887776666554 456788888764443322222 1223456776544 444555557788888877


Q ss_pred             CCCceEEEec-CCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC---CceEEEEE
Q psy14258        290 NSDDYETIAN-FSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK---RPSVIDYH  364 (440)
Q Consensus       290 ~g~~~~~~~~-~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~---~p~~l~~d  364 (440)
                      +++....+.. ...+.....++         |+ .+|+.+ +..+.|+..++...    .....+.+..   ......+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~-~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~  245 (312)
T 4ery_A          180 SGQCLKTLIDDDNPPVSFVKFS---------PNGKYILAA-TLDNTLKLWDYSKG----KCLKTYTGHKNEKYCIFANFS  245 (312)
T ss_dssp             TCCEEEEECCSSCCCEEEEEEC---------TTSSEEEEE-ETTTEEEEEETTTT----EEEEEECSSCCSSSCCCEEEE
T ss_pred             CCceeeEEeccCCCceEEEEEC---------CCCCEEEEE-cCCCeEEEEECCCC----cEEEEEEecCCceEEEEEEEE
Confidence            6665544322 22233333332         23 344444 33478888887654    2222222211   11233445


Q ss_pred             cCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC-CCCeEEEEEeC
Q psy14258        365 EKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA-GIGTINVAKIS  429 (440)
Q Consensus       365 ~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~-~~~~I~~~~~~  429 (440)
                      ..++.++++-...+.|+..++........+...-..+..+++.+.+..|.-+.. ..++|.+-+.+
T Consensus       246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            455666677667888988888765443333434466788999987766655532 45677766543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.65  E-value=0.072  Score=54.47  Aligned_cols=317  Identities=10%  Similarity=-0.014  Sum_probs=168.4

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEec
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTH  158 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~  158 (440)
                      +..++|++.++.|.....  +.|...++......          ..+...-..... |+.+.++.|--.   +.|.+-++
T Consensus        21 ~~~~~~spdg~~l~~~~~--~~v~l~~~~~~~~~----------~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~   88 (611)
T 1nr0_A           21 AVVLGNTPAGDKIQYCNG--TSVYTVPVGSLTDT----------EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT   88 (611)
T ss_dssp             CCCCEECTTSSEEEEEET--TEEEEEETTCSSCC----------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred             eeEEeeCCCCCEEEeCCC--CEEEEecCCCcccC----------eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeEC
Confidence            777888888877776653  35544444311111          112233344566 787766544333   67888887


Q ss_pred             C-Cce-EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEe
Q psy14258        159 Y-MEH-CMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       159 d-g~~-~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d  235 (440)
                      . +.. ....+........+++.+|...+|.-+..+.. ...|...+. |.....+ ...-...+.+++.+.+..++.+-
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~  166 (611)
T 1nr0_A           89 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNL-TGQARAMNSVDFKPSRPFRIISG  166 (611)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCC-CCCSSCEEEEEECSSSSCEEEEE
T ss_pred             CCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCccee-cCCCCCceEEEECCCCCeEEEEE
Confidence            4 222 12222333456889999996555555443321 023444332 2222222 22234567888887666545554


Q ss_pred             CCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEec--------CCCCeEE
Q psy14258        236 TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIAN--------FSRPFAI  306 (440)
Q Consensus       236 ~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~--------~~~p~~~  306 (440)
                      ...+.|..-+...........+ .......+++..+ .++.+-...+.|...+..+++....+..        ......+
T Consensus       167 s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v  245 (611)
T 1nr0_A          167 SDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  245 (611)
T ss_dssp             ETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             eCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEE
Confidence            5566676666433222222222 1334677887755 5666666678888778766665544421        1122333


Q ss_pred             EEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC--CCCceEEEEEcCCCEEEEEECCCCeEEEEe
Q psy14258        307 HIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD--LKRPSVIDYHEKEEYIYYAELTSYVIERRK  384 (440)
Q Consensus       307 ~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~--~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~  384 (440)
                      .+.          |++.++++-+..+.|+..++... .. ...++...  .....++.+  .++ ..++-...+.|...+
T Consensus       246 ~~s----------pdg~~l~s~s~D~~v~lWd~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~-~l~s~s~d~~i~~~~  310 (611)
T 1nr0_A          246 TWS----------PDGTKIASASADKTIKIWNVATL-KV-EKTIPVGTRIEDQQLGIIW--TKQ-ALVSISANGFINFVN  310 (611)
T ss_dssp             EEC----------TTSSEEEEEETTSEEEEEETTTT-EE-EEEEECCSSGGGCEEEEEE--CSS-CEEEEETTCCEEEEE
T ss_pred             EEC----------CCCCEEEEEeCCCeEEEEeCCCC-ce-eeeecCCCCccceeEEEEE--cCC-EEEEEeCCCcEEEEe
Confidence            332          34444454445578888887654 11 01111111  012234444  233 344545667777777


Q ss_pred             cCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        385 MFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       385 ~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +............-..+..|++.+.++.|+-+. ..++|.+.++..
T Consensus       311 ~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~  355 (611)
T 1nr0_A          311 PELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDIST  355 (611)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             CCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCC
Confidence            665433333333445688999998777666554 456788888764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.65  E-value=0.039  Score=51.36  Aligned_cols=273  Identities=10%  Similarity=-0.019  Sum_probs=149.2

Q ss_pred             EEEEEeeec---ccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEE
Q psy14258         83 AIYFCTHYM---EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIY  154 (440)
Q Consensus        83 ~~~i~~d~~---~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~  154 (440)
                      +.++++.+.   .+.+..+-...+.|+..++........        ..+...-..... ++.+... +..+    +.|.
T Consensus        35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~--------~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~  105 (321)
T 3ow8_A           35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ--------WSLEGHQLGVVSVDISHTLP-IAASSSLDAHIR  105 (321)
T ss_dssp             EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE--------EEECCCSSCEEEEEECSSSS-EEEEEETTSEEE
T ss_pred             EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee--------eeeccCCCCEEEEEECCCCC-EEEEEeCCCcEE
Confidence            788888653   234566666666666555542221100        001111222333 4443333 3333    6788


Q ss_pred             EEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEE
Q psy14258        155 FCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV  234 (440)
Q Consensus       155 ~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~  234 (440)
                      +-++....+...+.........+++.|...+|......   +.|...++........+...-.....+++.+.+..|..+
T Consensus       106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d---g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV---GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTT---SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCC---CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            88887655544444444567789999965545444333   588888887655444444444456789999777776665


Q ss_pred             eCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccC
Q psy14258        235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQ  312 (440)
Q Consensus       235 d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~  312 (440)
                      . ..+.|...++..........+. ......+++..+ .++.+-...+.|...+..+++....+..-. ....+.+.   
T Consensus       183 ~-~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s---  257 (321)
T 3ow8_A          183 A-IDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC---  257 (321)
T ss_dssp             E-TTSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC---
T ss_pred             c-CCCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC---
Confidence            4 4567888887544332222221 223467777654 555665667788877876665544443322 23344433   


Q ss_pred             CCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEe
Q psy14258        313 KQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRK  384 (440)
Q Consensus       313 ~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~  384 (440)
                             |++.++++-+..+.|+..++...    .....+.+ -....+++|.+.+..|. +-...+.|..-+
T Consensus       258 -------p~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~h~~~v~~v~~s~~g~~l~-s~~~d~~i~vwd  318 (321)
T 3ow8_A          258 -------PDDTHFVSSSSDKSVKVWDVGTR----TCVHTFFDHQDQVWGVKYNGNGSKIV-SVGDDQEIHIYD  318 (321)
T ss_dssp             -------TTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEE-EEETTCCEEEEE
T ss_pred             -------CCCCEEEEEeCCCcEEEEeCCCC----EEEEEEcCCCCcEEEEEECCCCCEEE-EEeCCCeEEEEe
Confidence                   34334444444578888887654    22222222 23456899998777654 433455665443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.62  E-value=0.029  Score=54.61  Aligned_cols=240  Identities=8%  Similarity=0.039  Sum_probs=145.2

Q ss_pred             ccccce-eeeecCCcEEEe----ceEEEEecCC-----------ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCC
Q psy14258        133 LLDGTE-RFPMVTHKIVYP----EAIYFCTHYM-----------EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRP  196 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~----~~I~~~~~dg-----------~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~  196 (440)
                      ...+.. ++.+.+++++.+    +.|.+.++..           .....+ ......+.+|+.+|....++.+-...  +
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~d--g  204 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDD--H  204 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTT--S
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCC--C
Confidence            345666 776654556655    6788888764           222222 23445689999999655244444333  5


Q ss_pred             cEEEEeCCCCCc--e-----eEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC----CcEEEecCCccCceee
Q psy14258        197 MLERSLLDGTER--F-----PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT----DRKTIRKGFPVQNLYD  265 (440)
Q Consensus       197 ~I~r~~~dG~~~--~-----~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~----~~~~i~~~~~~~~p~g  265 (440)
                      .|...++.....  .     ......-.....+++.+.++.++.+....+.|...++...    ....+...  -..+..
T Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~v~~  282 (430)
T 2xyi_A          205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH--TAEVNC  282 (430)
T ss_dssp             CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC--SSCEEE
T ss_pred             eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC--CCCeEE
Confidence            888888875221  1     1111223457789998877888888778889999998643    23333222  345677


Q ss_pred             eeEecC--EEEEEecCCCeEEEEeccCC-CceEEEecCC-CCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcC
Q psy14258        266 ITVFEN--NLFVTSWRNQSIIRVNKFNS-DDYETIANFS-RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFK  340 (440)
Q Consensus       266 l~~~~~--~ly~td~~~~~i~~~~~~~g-~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~  340 (440)
                      +++..+  +++++-...+.|...+..+. .....+..-. ....+.+.          |+ .+++++.+..+.|...++.
T Consensus       283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s----------p~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS----------PHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC----------SSCTTEEEEEETTSCCEEEEGG
T ss_pred             EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC----------CCCCCEEEEEeCCCcEEEEeCC
Confidence            887643  57877777888888887663 3334443222 33445443          33 3556655555788888887


Q ss_pred             CCCCC----------ceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        341 RDGTT----------EQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       341 ~~~~~----------~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      ..+..          ........+ -..+..+++++.+..++++-...+.|...+++.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            63110          012222222 235789999998775777777788887777653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.58  E-value=0.048  Score=50.51  Aligned_cols=239  Identities=10%  Similarity=0.061  Sum_probs=137.6

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC----ceeEEecCccCceEEEEeCCCC-EEEEEeCCCCcEEEEEc
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE----RFPMVTHKIVYPYGVTVDFPTK-HVYWVDTYLDFIDRINY  246 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~----~~~l~~~~~~~P~gl~vD~~~~-~ly~~d~~~~~i~~~~~  246 (440)
                      ....++++.|...+|+.+...   +.|...+++...    ...+. ..-.....+++.+.+. .|+.+. ..+.|...++
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d---~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~   86 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWD---GSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDL   86 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETT---SEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEE-TTSCEEEECS
T ss_pred             CcEEEEEEcCCCCEEEEEcCC---CeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEc-CCCeEEEEEe
Confidence            457789999855555555544   577777776554    22222 2234577889987776 666665 5678988888


Q ss_pred             -cCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccC---------CCceEEEecCCCCeEEEEeccCCCCC
Q psy14258        247 -DGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFN---------SDDYETIANFSRPFAIHIYHRQKQPD  316 (440)
Q Consensus       247 -dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~---------g~~~~~~~~~~~p~~~~v~~~~~qp~  316 (440)
                       .+.....+.....-.....+++..+.++++-...+.|...+..+         ++....+.....+..+.+.       
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------  159 (342)
T 1yfq_A           87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN-------  159 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC-------
T ss_pred             ccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec-------
Confidence             76655444320013345677776444444444567777777654         3222222211123334332       


Q ss_pred             CCCCceeEEeecCCccEEEEEEcCC-CCCCceeeeeecCCCCceEEEEEc-CCCEEEEEECCCCeEEEEecCCC------
Q psy14258        317 ALKPSTFLLYAKGKPAIIKGLTFKR-DGTTEQAIMPITDLKRPSVIDYHE-KEEYIYYAELTSYVIERRKMFGR------  388 (440)
Q Consensus       317 ~~~~~~~l~~~~~~~~~I~~i~~~~-~~~~~~~~~~~~~~~~p~~l~~d~-~~~~vy~~d~~~~~I~r~~~~g~------  388 (440)
                         ++. ++.+. ..+.|..+++.. . ...........-..+..+++.+ .++.++.+. ..+.|...+++..      
T Consensus       160 ---~~~-l~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          160 ---SSR-LIVGM-NNSQVQWFRLPLCE-DDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             ---SSE-EEEEE-STTEEEEEESSCCT-TCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTC
T ss_pred             ---CCc-EEEEe-CCCeEEEEECCccc-cccceeeecCCCCceeEEEECCCCCCEEEEEe-cCCcEEEEEEcCCCccccc
Confidence               344 44443 337888888876 3 2111112222233567899998 777555544 5778877666543      


Q ss_pred             CeEEEEECCC---------CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        389 GKEVVIDTGI---------YNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       389 ~~~~~~~~~~---------~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .....+....         ..+..+++.+.++.|+... ..+.|.+.++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~  282 (342)
T 1yfq_A          233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQT  282 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTT
T ss_pred             ccceeeecccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEcCcc
Confidence            2222333222         2688899988777665554 467899999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.57  E-value=0.061  Score=51.57  Aligned_cols=316  Identities=6%  Similarity=-0.037  Sum_probs=173.1

Q ss_pred             EEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEecCC
Q psy14258         85 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYM  160 (440)
Q Consensus        85 ~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg  160 (440)
                      +++|++.++.|+....+ +.|+..++.......        .  + ..-..... ++.+.++.|..+   +.|.+.++..
T Consensus        61 ~~~~s~~g~~l~~~~~d-~~v~i~d~~~~~~~~--------~--~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  128 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLD-GHDFLFNTIIRDGSK--------M--L-KRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF  128 (420)
T ss_dssp             TCEEEEEETTEEEEEET-TEEEEEECCSEETTT--------T--S-CSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred             ceeeeecCCeEEEEEcC-CcEEEEEecccceee--------E--E-ecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence            56788887777766654 556555543222110        0  1 11111122 333344433333   6798989887


Q ss_pred             ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258        161 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~  240 (440)
                      ...............++++.|...+|+.+...   +.|...+++.......+...-.....+++.+.+..|+.+. ..+.
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~  204 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSGEALISSSQD---MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS-LDGT  204 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE-TTSC
T ss_pred             cceeeecccccCccEEEEECCCCCEEEEEeCC---CeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc-CCCc
Confidence            76665554555778999999965555554443   5888888865444333343345678899998777777554 4567


Q ss_pred             EEEEEccCCCcEEEecC-C-ccCceee---------------------eeEec-CEEEEEecCCCeEEEEeccCCCceEE
Q psy14258        241 IDRINYDGTDRKTIRKG-F-PVQNLYD---------------------ITVFE-NNLFVTSWRNQSIIRVNKFNSDDYET  296 (440)
Q Consensus       241 i~~~~~dG~~~~~i~~~-~-~~~~p~g---------------------l~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~  296 (440)
                      |...++........... . .......                     +++.. +.+.++-...+.|...+..+++....
T Consensus       205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ  284 (420)
T ss_dssp             EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence            88777754333222221 0 0111122                     22222 24444445577788888776665544


Q ss_pred             Eec-CC-CCeEEEEeccCCCCCCCCCcee-EEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEE
Q psy14258        297 IAN-FS-RPFAIHIYHRQKQPDALKPSTF-LLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       297 ~~~-~~-~p~~~~v~~~~~qp~~~~~~~~-l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~  373 (440)
                      +.. .. ....+.+.          |++. ++++-+..+.|+..++... ...-..+....-.....+.+.  ++.++++
T Consensus       285 ~~~~~~~~v~~~~~~----------~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~~l~s  351 (420)
T 3vl1_A          285 LPSKFTCSCNSLTVD----------GNNANYIYAGYENGMLAQWDLRSP-ECPVGEFLINEGTPINNVYFA--AGALFVS  351 (420)
T ss_dssp             ECCTTSSCEEEEEEC----------SSCTTEEEEEETTSEEEEEETTCT-TSCSEEEEESTTSCEEEEEEE--TTEEEEE
T ss_pred             cccccCCCceeEEEe----------CCCCCEEEEEeCCCeEEEEEcCCC-cCchhhhhccCCCCceEEEeC--CCCEEEE
Confidence            332 22 23344433          2322 4444344588998988665 111112222122233455554  3556677


Q ss_pred             ECCCCeEEEEecCCC---------CeEEEEECCCCCeeeEEEecCCC---cEEEEeCCCCeEEEEEeCC
Q psy14258        374 ELTSYVIERRKMFGR---------GKEVVIDTGIYNVEGMAVDWMAN---NLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       374 d~~~~~I~r~~~~g~---------~~~~~~~~~~~~~~glAvD~~~~---~lYwtd~~~~~I~~~~~~g  430 (440)
                      -...++|+..++...         .....+...-..+..+++.+.+.   .|+.+.. .+.+.+.++..
T Consensus       352 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~-~g~~~~~~~~~  419 (420)
T 3vl1_A          352 SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK-NNFCALYNLSN  419 (420)
T ss_dssp             ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET-TTEEEEEESCC
T ss_pred             ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC-CceEEEEeccC
Confidence            777888888877642         11122233445778899988776   5666643 56787777653

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.54  E-value=1.9e-05  Score=55.87  Aligned_cols=35  Identities=26%  Similarity=0.524  Sum_probs=31.1

Q ss_pred             eeecccCCC-CCCCCCCcccCCC-ceEEc-cCCeeeec
Q psy14258         11 CVDADECLI-DGSCDQTCTNTHL-SYTYT-DEGFSFQG   45 (440)
Q Consensus        11 C~d~~~C~~-~~~Cs~~C~n~~~-~~~C~-~~g~~l~~   45 (440)
                      ++|++||.. ++.|+|.|.|+++ +|.|. +.||.|.+
T Consensus         2 ~~d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~   39 (69)
T 1kli_L            2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA   39 (69)
T ss_dssp             CSCCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECT
T ss_pred             CcccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECC
Confidence            468999984 6899999999999 89999 99999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.54  E-value=0.06  Score=50.92  Aligned_cols=267  Identities=6%  Similarity=-0.062  Sum_probs=138.6

Q ss_pred             ccceeeeEEEecCCCcee--e--eeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeec
Q psy14258         56 AFWEECFGPMDIEEWDEG--L--SFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLER  131 (440)
Q Consensus        56 ~~~~~~I~~~~l~~~~~~--~--~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~  131 (440)
                      ++|.++|+..+.......  +  ........+.+++|.+.+ ++..+. ..+.|+..++........      .......
T Consensus        66 ~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s-~dg~v~lWd~~~~~~~~~------~~~~~~~  137 (357)
T 4g56_B           66 RTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVAS-DSGAVELWEILEKESLLV------NKFAKYE  137 (357)
T ss_dssp             SSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEE-TTSCEEEC--------CC------CCEEECC
T ss_pred             ccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEE-CCCEEEEeeccccceeEE------EeeccCC
Confidence            356666776655332221  1  111111228999999874 444443 446665444432111000      0000111


Q ss_pred             cccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258        132 SLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  207 (440)
Q Consensus       132 ~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~  207 (440)
                      .-..+.. ++.+.++.|.-+   +.|.+.++....+...+........++++.+....++.+-...  +.|...++....
T Consensus       138 h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d--g~v~~wd~~~~~  215 (357)
T 4g56_B          138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGED--GRILLWDTRKPK  215 (357)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETT--SCEEECCTTSSS
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccC--CceEEEECCCCc
Confidence            1233556 776666655444   6788888887665555554556788999988665666665443  577777765433


Q ss_pred             ceeEEe--cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec--CEEEEEecCCCeE
Q psy14258        208 RFPMVT--HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSI  283 (440)
Q Consensus       208 ~~~l~~--~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i  283 (440)
                      ......  ..-..+..+++.+.++.++.+-...+.|...++..........+. ......+++..  ..+..+-...+.|
T Consensus       216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i  294 (357)
T 4g56_B          216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTV  294 (357)
T ss_dssp             CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence            222211  122347788998777777766556678888887544332222321 23456777753  3455555556778


Q ss_pred             EEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC
Q psy14258        284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD  342 (440)
Q Consensus       284 ~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~  342 (440)
                      ...+..+++....+.......++++ +|.        ++.++++-+..+.|+..++...
T Consensus       295 ~iwd~~~~~~~~~~~H~~~V~~vaf-sP~--------d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          295 AVLDADFSEVFRDLSHRDFVTGVAW-SPL--------DHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEECTTSCEEEEECCCSSCEEEEEE-CSS--------STTEEEEEETTSCEEEEECC--
T ss_pred             EEEECCCCcEeEECCCCCCEEEEEE-eCC--------CCCEEEEEcCCCeEEEEECCCC
Confidence            7777766644333322223344433 211        2334444444467777776544

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.50  E-value=1.8e-05  Score=61.72  Aligned_cols=43  Identities=33%  Similarity=0.672  Sum_probs=8.4

Q ss_pred             ceecCCCCceeecccCCCCCCCCCCcccCCCceEEc-cCCeeee
Q psy14258          2 TFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus         2 ~~~~~~~~~C~d~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      ||.+.+++.|+|++||..+..|.+.|.|++++|.|. +.||.+.
T Consensus        57 Gy~g~~g~~C~dideC~~~~~C~~~C~n~~gsy~C~C~~Gy~~~  100 (107)
T 2w2n_E           57 GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLD  100 (107)
T ss_dssp             TCEEETTTEEEC--------------------------------
T ss_pred             CccccCCCccccccccCCCCCcCCeeecCCCCEEEECCCCceEC
Confidence            555556678998999986677888898888889998 8888764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.49  E-value=0.064  Score=49.89  Aligned_cols=257  Identities=7%  Similarity=-0.020  Sum_probs=149.1

Q ss_pred             ceEEEEecCCceEEE--EEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCC
Q psy14258        151 EAIYFCTHYMEHCMI--AIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT  228 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~--~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~  228 (440)
                      +.|.+-+++......  .+........++++.+.. .+..+-...  +.|...++........+...-.....+++.+.+
T Consensus        58 ~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D--~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg  134 (321)
T 3ow8_A           58 DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLD--AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS  134 (321)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETT--SEEEEEETTTTEEEEEEECCTTCCCCEEECTTS
T ss_pred             CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCC--CcEEEEECCCCCEEEEEeCCCccEEEEEECCCC
Confidence            566666665543322  223344567788888854 444443332  578888876543333333333345678998776


Q ss_pred             CEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEE
Q psy14258        229 KHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAI  306 (440)
Q Consensus       229 ~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~  306 (440)
                      ..|..+ ...+.|...++............ ......+++..+ ....+-...+.|...+..+++....+..-. ....+
T Consensus       135 ~~l~~g-~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l  212 (321)
T 3ow8_A          135 QYLATG-THVGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL  212 (321)
T ss_dssp             SEEEEE-CTTSEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEE
T ss_pred             CEEEEE-cCCCcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEE
Confidence            666554 45678888887655443333321 234567777654 444444457788888877776555554322 23444


Q ss_pred             EEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        307 HIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       307 ~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                      .+.          |++.++++-+..+.|+..++...    .....+.+ ......++|.+.+..++ +-...++|..-++
T Consensus       213 ~~s----------pd~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~~~~l~-s~s~D~~v~iwd~  277 (321)
T 3ow8_A          213 TFS----------PDSQLLVTASDDGYIKIYDVQHA----NLAGTLSGHASWVLNVAFCPDDTHFV-SSSSDKSVKVWDV  277 (321)
T ss_dssp             EEC----------TTSCEEEEECTTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEET
T ss_pred             EEc----------CCCCEEEEEcCCCeEEEEECCCc----ceeEEEcCCCCceEEEEECCCCCEEE-EEeCCCcEEEEeC
Confidence            433          34334444444578888887655    22222332 23456899999877654 4456788888888


Q ss_pred             CCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        386 FGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       386 ~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      ........+...-..+.++++.+.+..|. +-...++|.+.+.
T Consensus       278 ~~~~~~~~~~~h~~~v~~v~~s~~g~~l~-s~~~d~~i~vwd~  319 (321)
T 3ow8_A          278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIV-SVGDDQEIHIYDC  319 (321)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTCCEEEEEC
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEE-EEeCCCeEEEEeC
Confidence            75433222333446788999987666554 4444567777653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.49  E-value=0.068  Score=50.06  Aligned_cols=241  Identities=6%  Similarity=-0.100  Sum_probs=137.4

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC--ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE--RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT  249 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~--~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~  249 (440)
                      .....+++.|...+|+.....   +.|...++++..  ....+...-.....+++.+.+..|+.+. ..+.|...++...
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~   84 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNN---HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGR   84 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSS---SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETT
T ss_pred             CCeEEEEECCCCCEEEEEeCC---CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCC
Confidence            457789999854445544333   588888887664  2222333344578899998777777665 4567888877655


Q ss_pred             CcEEEec-CCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEe----cCC-CCeEEEEeccCCCCCCCCCc
Q psy14258        250 DRKTIRK-GFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIA----NFS-RPFAIHIYHRQKQPDALKPS  321 (440)
Q Consensus       250 ~~~~i~~-~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~----~~~-~p~~~~v~~~~~qp~~~~~~  321 (440)
                      ....... .........+++..+  .|+... .++.|...+...++......    ... ....+.+.          |+
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~  153 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH----------PN  153 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC----------TT
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc----------CC
Confidence            4322221 111334667777644  444444 46667666665555422221    111 23344333          23


Q ss_pred             eeEEeecCCccEEEEEEcCCCC--------------CCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        322 TFLLYAKGKPAIIKGLTFKRDG--------------TTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       322 ~~l~~~~~~~~~I~~i~~~~~~--------------~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      +.++++-+..+.|+.+++....              ........+.. -....++++++.++.++.+. ..+.|+..++.
T Consensus       154 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~  232 (372)
T 1k8k_C          154 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADAD  232 (372)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGG
T ss_pred             CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECC
Confidence            2233333334778888764210              01112222222 23467899999887666554 67889999987


Q ss_pred             CCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        387 GRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       387 g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .......+...-..+..+++.+.+..| .+- ..+.|.+.+++.
T Consensus       233 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          233 KKMAVATLASETLPLLAVTFITESSLV-AAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             GTTEEEEEECSSCCEEEEEEEETTEEE-EEE-TTSSCEEEEEET
T ss_pred             CCceeEEEccCCCCeEEEEEecCCCEE-EEE-eCCeEEEEEccC
Confidence            544444444444567899999766533 343 567888888764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.46  E-value=0.079  Score=50.20  Aligned_cols=288  Identities=8%  Similarity=-0.061  Sum_probs=153.8

Q ss_pred             eEEEEEeee-cccEEEEEEcCCCCceeEEeCCCCCcceeeccccccc---eeeccccccce-eeeecCCcEEEe----ce
Q psy14258         82 EAIYFCTHY-MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRP---MLERSLLDGTE-RFPMVTHKIVYP----EA  152 (440)
Q Consensus        82 ~~~~i~~d~-~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~p~~-avD~~~~~lY~~----~~  152 (440)
                      .+.++++++ .++.| ++-...+.|...++.................   ........+.. ++.+.+++++++    +.
T Consensus        45 ~v~~~~~s~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  123 (408)
T 4a11_B           45 GINTLDIEPVEGRYM-LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT  123 (408)
T ss_dssp             CEEEEEECTTTCCEE-EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred             cEEEEEEecCCCCEE-EEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence            389999998 54444 4444457777766654332211000000000   00012223444 555534545555    68


Q ss_pred             EEEEecCCceEEEEEcCCCCCceEEEEcCCCC---eEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCC
Q psy14258        153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSG---YMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK  229 (440)
Q Consensus       153 I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g---~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~  229 (440)
                      |.+.+++......... .......+++.+...   .++.....   +.|...++........+...-.....+++.+.+.
T Consensus       124 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  199 (408)
T 4a11_B          124 LKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRG---PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD  199 (408)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESS---SSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred             EEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCC---CeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence            9999988766655444 335577888877533   44444433   5888888875544434433344567899988777


Q ss_pred             EEEEEeCCCCcEEEEEccCCC--cEEEec-------------CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCc
Q psy14258        230 HVYWVDTYLDFIDRINYDGTD--RKTIRK-------------GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDD  293 (440)
Q Consensus       230 ~ly~~d~~~~~i~~~~~dG~~--~~~i~~-------------~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~  293 (440)
                      .++++-...+.|...++....  ...+..             .........+++..+ ...++-..++.|...+..+++.
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence            666665567788888875432  122110             001223466777654 3334444567777777766654


Q ss_pred             eEEEecCC---CCeE--EEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCC
Q psy14258        294 YETIANFS---RPFA--IHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKE  367 (440)
Q Consensus       294 ~~~~~~~~---~p~~--~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~  367 (440)
                      ........   ....  +....       .....+++.+..  +.|...++...    .....+.+ .....+++|.+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          280 TLVNYGKVCNNSKKGLKFTVSC-------GCSSEFVFVPYG--STIAVYTVYSG----EQITMLKGHYKTVDCCVFQSNF  346 (408)
T ss_dssp             CCCCCCCCCCCCSSCCCCEECC-------SSSSCEEEEEET--TEEEEEETTTC----CEEEEECCCSSCEEEEEEETTT
T ss_pred             ceeccccccccccccceeEEec-------CCCceEEEEecC--CEEEEEECcCC----cceeeeccCCCeEEEEEEcCCC
Confidence            33221100   0001  11110       001234444444  78888887654    22223332 2345689999988


Q ss_pred             CEEEEEECCCCeEEEEecCCC
Q psy14258        368 EYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       368 ~~vy~~d~~~~~I~r~~~~g~  388 (440)
                      ..|+ +-...+.|..-++...
T Consensus       347 ~~l~-s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          347 QELY-SGSRDCNILAWVPSLY  366 (408)
T ss_dssp             TEEE-EEETTSCEEEEEECC-
T ss_pred             CEEE-EECCCCeEEEEeCCCC
Confidence            7665 4446788888888753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.38  E-value=0.11  Score=49.84  Aligned_cols=296  Identities=7%  Similarity=-0.061  Sum_probs=151.2

Q ss_pred             eEEEecCCCceeeeeecccceEEEE-EeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-e
Q psy14258         62 FGPMDIEEWDEGLSFLTFAQEAIYF-CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-R  139 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~~~~~~~~i-~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-a  139 (440)
                      |+..++........+....  +..+ .+.+..+. +.+-...+.|...++......          ..+......+.. +
T Consensus        80 v~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~----------~~~~~h~~~v~~~~  146 (420)
T 3vl1_A           80 DFLFNTIIRDGSKMLKRAD--YTAVDTAKLQMRR-FILGTTEGDIKVLDSNFNLQR----------EIDQAHVSEITKLK  146 (420)
T ss_dssp             EEEEECCSEETTTTSCSCC--EEEEEEECSSSCE-EEEEETTSCEEEECTTSCEEE----------EETTSSSSCEEEEE
T ss_pred             EEEEEecccceeeEEecCC--ceEEEEEecCCCE-EEEEECCCCEEEEeCCCccee----------eecccccCccEEEE
Confidence            6666665443322222222  4444 34544444 444444566655544322110          011122334555 6


Q ss_pred             eeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec--
Q psy14258        140 FPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH--  214 (440)
Q Consensus       140 vD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~--  214 (440)
                      +.+.++.|+.+   +.|.+.++........+........++++.|...+|+.+...   +.|...++........+..  
T Consensus       147 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~  223 (420)
T 3vl1_A          147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD---GTIRLWECGTGTTIHTFNRKE  223 (420)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT---SCEEEEETTTTEEEEEECBTT
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC---CcEEEeECCCCceeEEeecCC
Confidence            66666655544   689998987544333334455678899999965556655544   4788777764332222221  


Q ss_pred             -Cc---------------------cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-
Q psy14258        215 -KI---------------------VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-  271 (440)
Q Consensus       215 -~~---------------------~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-  271 (440)
                       ..                     .....+++++.+..|+ +-...+.|...++...................+++..+ 
T Consensus       224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  302 (420)
T 3vl1_A          224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI-AGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN  302 (420)
T ss_dssp             BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE-EEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC
T ss_pred             CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE-EEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC
Confidence             01                     1122234454444444 44456778888876544333222211334677887755 


Q ss_pred             E-EEEEecCCCeEEEEeccCCCc-eEEEec-CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc--
Q psy14258        272 N-LFVTSWRNQSIIRVNKFNSDD-YETIAN-FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE--  346 (440)
Q Consensus       272 ~-ly~td~~~~~i~~~~~~~g~~-~~~~~~-~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~--  346 (440)
                      . ++++-...+.|...+..+++. ...+.. ...+.....+.         +.. ++++-+..+.|+..++.......  
T Consensus       303 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~-~l~s~~~d~~v~iw~~~~~~~~~~~  372 (420)
T 3vl1_A          303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA---------AGA-LFVSSGFDTSIKLDIISDPESERPA  372 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE---------TTE-EEEEETTTEEEEEEEECCTTCCSCE
T ss_pred             CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC---------CCC-EEEEecCCccEEEEeccCCCCCccc
Confidence            2 555655678888888877654 333332 23333333332         123 44444445788888876541111  


Q ss_pred             ----eeeeeecCCCCceEEEEEcCCC---EEEEEECCCCeEEEEec
Q psy14258        347 ----QAIMPITDLKRPSVIDYHEKEE---YIYYAELTSYVIERRKM  385 (440)
Q Consensus       347 ----~~~~~~~~~~~p~~l~~d~~~~---~vy~~d~~~~~I~r~~~  385 (440)
                          ..............++|.+.+.   .++.+. ..+.+...++
T Consensus       373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g-~~g~~~~~~~  417 (420)
T 3vl1_A          373 IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG-KNNFCALYNL  417 (420)
T ss_dssp             ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE-TTTEEEEEES
T ss_pred             eeccCccEEccCCcceEEEEEccCCCCcceEEEEc-CCceEEEEec
Confidence                1112222333556888888777   566554 3444544443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.34  E-value=0.11  Score=49.21  Aligned_cols=243  Identities=6%  Similarity=-0.116  Sum_probs=139.8

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC------ceeEEecCccCceEEEEeCC----C---CEEEEEeC
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE------RFPMVTHKIVYPYGVTVDFP----T---KHVYWVDT  236 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~------~~~l~~~~~~~P~gl~vD~~----~---~~ly~~d~  236 (440)
                      ......+|+++|  .+|+-....   +.|...+++...      ....+...-.....+++.+.    +   ..|+.+ .
T Consensus        15 h~~~i~~~~~~~--~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~-~   88 (397)
T 1sq9_A           15 HDADIFSVSACN--SFTVSCSGD---GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT-S   88 (397)
T ss_dssp             SSSCEEEEEECS--SEEEEEETT---SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE-E
T ss_pred             hhcCeEEEEecC--CeEEEEcCC---CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE-c
Confidence            345678899988  555554443   588888887765      22222223344677888765    4   445444 4


Q ss_pred             CCCcEEEEEccCCC------cEEEecCCc---cCceeeeeEe----cC-EE-EEEecCCCeEEEEeccC------CCceE
Q psy14258        237 YLDFIDRINYDGTD------RKTIRKGFP---VQNLYDITVF----EN-NL-FVTSWRNQSIIRVNKFN------SDDYE  295 (440)
Q Consensus       237 ~~~~i~~~~~dG~~------~~~i~~~~~---~~~p~gl~~~----~~-~l-y~td~~~~~i~~~~~~~------g~~~~  295 (440)
                      ..+.|...++....      ...+.....   -.....+++.    .+ .. +++-..++.|...+..+      ++...
T Consensus        89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  168 (397)
T 1sq9_A           89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  168 (397)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence            56778888876554      233322100   1456778877    33 33 44444567777666655      33332


Q ss_pred             -----EEec--------CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-------C
Q psy14258        296 -----TIAN--------FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-------L  355 (440)
Q Consensus       296 -----~~~~--------~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-------~  355 (440)
                           .+..        ...+..+.+.          |++ ++++-...+.|+.+++...    .....+..       -
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~-~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~h~~~~  233 (397)
T 1sq9_A          169 WSPTLELQGTVESPMTPSQFATSVDIS----------ERG-LIATGFNNGTVQISELSTL----RPLYNFESQHSMINNS  233 (397)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEEC----------TTS-EEEEECTTSEEEEEETTTT----EEEEEEECCC---CCC
T ss_pred             ccCcceeeeeeccccCCCCCceEEEEC----------CCc-eEEEEeCCCcEEEEECCCC----ceeEEEeccccccccC
Confidence                 2211        1123333333          455 5555455588988888654    23333333       3


Q ss_pred             CCceEEEEEcCCCEEEEEECCC---CeEEEEecCCCCeEEEEEC-------------CCCCeeeEEEecCCCcEEEEeCC
Q psy14258        356 KRPSVIDYHEKEEYIYYAELTS---YVIERRKMFGRGKEVVIDT-------------GIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       356 ~~p~~l~~d~~~~~vy~~d~~~---~~I~r~~~~g~~~~~~~~~-------------~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                      .....+++++.+..++.+. ..   +.|+..++........+..             .-..+..+++.+.++.|+ +-..
T Consensus       234 ~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~  311 (397)
T 1sq9_A          234 NSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC-SAGW  311 (397)
T ss_dssp             CCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE-EEET
T ss_pred             CccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE-EEeC
Confidence            4567999999888666554 44   7898888875433333332             345678899987666554 4445


Q ss_pred             CCeEEEEEeCCCeeeE
Q psy14258        420 IGTINVAKISDFSIRK  435 (440)
Q Consensus       420 ~~~I~~~~~~g~~~~~  435 (440)
                      .+.|.+.++...+...
T Consensus       312 dg~i~iwd~~~~~~~~  327 (397)
T 1sq9_A          312 DGKLRFWDVKTKERIT  327 (397)
T ss_dssp             TSEEEEEETTTTEEEE
T ss_pred             CCeEEEEEcCCCceeE
Confidence            7889999987534333

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.33  E-value=7.8e-05  Score=49.83  Aligned_cols=34  Identities=32%  Similarity=0.630  Sum_probs=29.8

Q ss_pred             eecccCCC---------CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         12 VDADECLI---------DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~~---------~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +|++||..         ++.|.+.|.|++|+|.|. +.||.+..
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~   45 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECT
T ss_pred             CccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECC
Confidence            58899986         378999999999999999 99998754

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.31  E-value=0.23  Score=52.04  Aligned_cols=279  Identities=9%  Similarity=-0.003  Sum_probs=151.9

Q ss_pred             ecccEEEEEEcCC----CCceeEEeC---CCCCcceeeccccccceeeccc-cccce-eeeecCCcEEEe--------ce
Q psy14258         90 YMEHCMIAIDLNL----SKPRGIALD---PTSGYMFFTKWGATRPMLERSL-LDGTE-RFPMVTHKIVYP--------EA  152 (440)
Q Consensus        90 ~~~~~ly~~d~~~----~~I~~~~~~---~~~~~~~~~~~~~~~v~~~~~~-~~p~~-avD~~~~~lY~~--------~~  152 (440)
                      +.++++|++-...    ..|++....   +...+.+...   ..  +..+. ....+ ++.+.++.|.++        ..
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~---~~--l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~  190 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDP---NT--WAKDGATALDAWAASDDGRLLAYSVQDGGSDWRT  190 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECG---GG--CC----EEEEEEEECTTSSEEEEEEEETTCSEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECH---HH--hccCCCEEEEeEEECCCCCEEEEEEcCCCCceEE
Confidence            6678888776543    345666554   3322211000   00  11111 13445 777788878777        25


Q ss_pred             EEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-----------CCcEEEEeCCCCCc-eeEEecCcc---
Q psy14258        153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-----------RPMLERSLLDGTER-FPMVTHKIV---  217 (440)
Q Consensus       153 I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-----------~~~I~r~~~dG~~~-~~l~~~~~~---  217 (440)
                      |.+.++++........... ...+++..|. ..||++.....           ..+|++.++.+... ..++...-.   
T Consensus       191 i~v~dl~tg~~~~~~~~~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~  268 (741)
T 1yr2_A          191 VKFVGVADGKPLADELKWV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK  268 (741)
T ss_dssp             EEEEETTTCCEEEEEEEEE-ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             EEEEECCCCCCCCccCCCc-eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence            8889998765433211111 1246778887 88888864321           24688888865442 233332211   


Q ss_pred             CceEEEEeCCCCEEEEEeC----CCCcEEEEEccCC--C-cEEEecCC-ccCceeeeeEecCEEEEEec---CCCeEEEE
Q psy14258        218 YPYGVTVDFPTKHVYWVDT----YLDFIDRINYDGT--D-RKTIRKGF-PVQNLYDITVFENNLFVTSW---RNQSIIRV  286 (440)
Q Consensus       218 ~P~gl~vD~~~~~ly~~d~----~~~~i~~~~~dG~--~-~~~i~~~~-~~~~p~gl~~~~~~ly~td~---~~~~i~~~  286 (440)
                      +-.++++.+.+..|+++-.    ....|+.+++++.  . .+.+.... ....|  +.-+++.||+...   .+..|+.+
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~--~~~dg~~l~~~s~~~~~~~~l~~~  346 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF--VDGVGDQLWFVSGDGAPLKKIVRV  346 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE--EEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE--EeccCCEEEEEECCCCCCCEEEEE
Confidence            3467889888888877653    2458999998776  4 55554421 11222  3456778877653   24679888


Q ss_pred             eccCCC-c-eEEEecCCC-CeEEEEeccCCCCCCCCCceeEEeecC--CccEEEEEEcCCCCCCceeeeeecCCCCceEE
Q psy14258        287 NKFNSD-D-YETIANFSR-PFAIHIYHRQKQPDALKPSTFLLYAKG--KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVI  361 (440)
Q Consensus       287 ~~~~g~-~-~~~~~~~~~-p~~~~v~~~~~qp~~~~~~~~l~~~~~--~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l  361 (440)
                      +..++. . ..++..... ..++...           ++.|+++..  ...+|+.+++++.   ....+++.......++
T Consensus       347 d~~~~~~~~~~l~~~~~~~l~~~~~~-----------~~~lv~~~~~dg~~~l~~~~~~g~---~~~~l~~~~~~~v~~~  412 (741)
T 1yr2_A          347 DLSGSTPRFDTVVPESKDNLESVGIA-----------GNRLFASYIHDAKSQVLAFDLDGK---PAGAVSLPGIGSASGL  412 (741)
T ss_dssp             ECSSSSCEEEEEECCCSSEEEEEEEE-----------BTEEEEEEEETTEEEEEEEETTSC---EEEECBCSSSCEEEEE
T ss_pred             eCCCCccccEEEecCCCCeEEEEEEE-----------CCEEEEEEEECCEEEEEEEeCCCC---ceeeccCCCCeEEEEe
Confidence            876542 2 233332221 1223222           234554432  2356777776554   1112222233345577


Q ss_pred             EEEcCCCEEEEEEC---CCCeEEEEecCCCCeE
Q psy14258        362 DYHEKEEYIYYAEL---TSYVIERRKMFGRGKE  391 (440)
Q Consensus       362 ~~d~~~~~vy~~d~---~~~~I~r~~~~g~~~~  391 (440)
                      ++++.++.++++-.   .-.+|++.++.+...+
T Consensus       413 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~  445 (741)
T 1yr2_A          413 SGRPGDRHAYLSFSSFTQPATVLALDPATAKTT  445 (741)
T ss_dssp             ECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred             ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            78887777776532   3468999998765433

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.28  E-value=0.23  Score=51.45  Aligned_cols=205  Identities=6%  Similarity=-0.064  Sum_probs=121.9

Q ss_pred             ceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEE
Q psy14258         81 QEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFC  156 (440)
Q Consensus        81 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~  156 (440)
                      ..+.++++++.+..+..+-...+.|+..++.......     ......+...-..... ++.+.++.|.-+   +.|.+.
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-----GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW  457 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-----CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-----ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            3489999988777788887777777766664322110     0000112233344556 777666645444   688888


Q ss_pred             ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC---ccCceEEEEeCCCC-EEE
Q psy14258        157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK---IVYPYGVTVDFPTK-HVY  232 (440)
Q Consensus       157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~---~~~P~gl~vD~~~~-~ly  232 (440)
                      ++....+...+........++++.|...+|.-....   +.|...+..+.....+....   ......+++.+... .++
T Consensus       458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD---RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCC---CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            887655544444455678899999965555544443   47777777665444333221   22356788876542 344


Q ss_pred             EEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCce
Q psy14258        233 WVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDY  294 (440)
Q Consensus       233 ~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~  294 (440)
                      .+-...+.|...++..........+. ......+++..+ .+..+-...+.|...+..+++..
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLAGH-TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            44455677888887665544333321 334567787754 55666666778877787666543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.27  E-value=0.24  Score=51.50  Aligned_cols=277  Identities=11%  Similarity=0.038  Sum_probs=150.8

Q ss_pred             eeeecCCcEEEe--------ceEEEEecCCceEEEEEcCC-C-----CCceEEEEcCCCCeEEEEEc-C-CCCCcEEEEe
Q psy14258        139 RFPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDLN-L-----SKPRGIALDPTSGYMFFTKW-G-ATRPMLERSL  202 (440)
Q Consensus       139 avD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~-~-----~~P~~iavd~~~g~lywtd~-~-~~~~~I~r~~  202 (440)
                      +..+.++.+|++        ..|.+.+.+|...++++... +     ....++++.|...+|-++.. . .....|...+
T Consensus        74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence            444678888888        24788888777666666421 1     13668899997777766643 2 2135899999


Q ss_pred             CCCCCceeEEecCccC--ceEEEEeCCCCEEEEEeCCC------------CcEEEEEccCCC--cEEEecCCc-cCceee
Q psy14258        203 LDGTERFPMVTHKIVY--PYGVTVDFPTKHVYWVDTYL------------DFIDRINYDGTD--RKTIRKGFP-VQNLYD  265 (440)
Q Consensus       203 ~dG~~~~~l~~~~~~~--P~gl~vD~~~~~ly~~d~~~------------~~i~~~~~dG~~--~~~i~~~~~-~~~p~g  265 (440)
                      +++.....  ...+..  ..+++..+.+..||++....            ..|+..++.+..  ...+..... -..-.+
T Consensus       154 l~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~  231 (695)
T 2bkl_A          154 VDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ  231 (695)
T ss_dssp             TTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred             CCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence            98765430  111111  15788888888898886532            248888886554  234444211 112345


Q ss_pred             eeEec--CEEEEEecC---CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecC--CccEEEEEE
Q psy14258        266 ITVFE--NNLFVTSWR---NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKG--KPAIIKGLT  338 (440)
Q Consensus       266 l~~~~--~~ly~td~~---~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~--~~~~I~~i~  338 (440)
                      +++..  ..|+++...   +..|+.++..+++...+........... .+         .+.+++.++.  ...+|..++
T Consensus       232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~---------~g~l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVH-AW---------KDRFYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEE-EE---------TTEEEEEECTTCTTCEEEEEB
T ss_pred             EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEE-ec---------CCcEEEEECCCCCCCEEEEEe
Confidence            55544  466665432   3467776654444443433322222211 11         1233344432  247898888


Q ss_pred             cCCCCCCc--eeeeeecCCCCceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEE
Q psy14258        339 FKRDGTTE--QAIMPITDLKRPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLY  414 (440)
Q Consensus       339 ~~~~~~~~--~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lY  414 (440)
                      +++. ...  ...++-..-....++++.  +++++++-..  ...|+.++++|.....+...+...+.++++++.++.|+
T Consensus       302 ~~~~-~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          302 PAKP-ARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             TTBC-SGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred             CCCC-CccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence            8665 211  111111101123456665  6778877543  45677778777533333222234456666666666666


Q ss_pred             EEeCC---CCeEEEEEeCC
Q psy14258        415 WTDAG---IGTINVAKISD  430 (440)
Q Consensus       415 wtd~~---~~~I~~~~~~g  430 (440)
                      ++-..   -.+|...++.+
T Consensus       379 ~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          379 YVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             EEEEETTEEEEEEEEETTT
T ss_pred             EEEcCCCCCCEEEEEECCC
Confidence            55322   24677777765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.27  E-value=0.24  Score=51.49  Aligned_cols=282  Identities=9%  Similarity=-0.011  Sum_probs=151.8

Q ss_pred             ecccEEEEEEcCC----CCceeEEeCCCCCcceeeccccccceee-ccccccce-eeeecCCcEEEe--------ceEEE
Q psy14258         90 YMEHCMIAIDLNL----SKPRGIALDPTSGYMFFTKWGATRPMLE-RSLLDGTE-RFPMVTHKIVYP--------EAIYF  155 (440)
Q Consensus        90 ~~~~~ly~~d~~~----~~I~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~p~~-avD~~~~~lY~~--------~~I~~  155 (440)
                      +.++++|++-...    ..|++....+...+.+...   ..  +. ..-....+ ++.+.++.|.++        ..|.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~---~~--~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v  151 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDP---NG--WSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV  151 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECG---GG--SSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEch---HH--hccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence            4577888776543    3466666544432222000   00  00 00013445 777888877776        36889


Q ss_pred             EecCCceEEEEEcCCCCC--ceEEEEcCCCCeEEEEEcCCC----------CCcEEEEeCCCCCce-eEEecC---ccCc
Q psy14258        156 CTHYMEHCMIAIDLNLSK--PRGIALDPTSGYMFFTKWGAT----------RPMLERSLLDGTERF-PMVTHK---IVYP  219 (440)
Q Consensus       156 ~~~dg~~~~~~~~~~~~~--P~~iavd~~~g~lywtd~~~~----------~~~I~r~~~dG~~~~-~l~~~~---~~~P  219 (440)
                      .++++.....  ...+..  ..+++..|....||++.....          ..+|++.++++...+ .++...   -..-
T Consensus       152 ~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~  229 (695)
T 2bkl_A          152 IDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF  229 (695)
T ss_dssp             EETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred             EECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence            9998765320  111212  267888887777888875321          145999999866532 333322   1244


Q ss_pred             eEEEEeCCCCEEEEEeCC---CCcEEEEEccCCCcEEEecCC-ccCceeeeeEecCEEEEEec---CCCeEEEEeccCCC
Q psy14258        220 YGVTVDFPTKHVYWVDTY---LDFIDRINYDGTDRKTIRKGF-PVQNLYDITVFENNLFVTSW---RNQSIIRVNKFNSD  292 (440)
Q Consensus       220 ~gl~vD~~~~~ly~~d~~---~~~i~~~~~dG~~~~~i~~~~-~~~~p~gl~~~~~~ly~td~---~~~~i~~~~~~~g~  292 (440)
                      .++++.+.+.+|+++...   ...|+.++..+...+.+.... ....|  +.-.++ +|+...   .+..|+.++..+++
T Consensus       230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV--HAWKDR-FYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE--EEETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE--EecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence            688899888888876533   237777766555555555421 11122  223445 666543   35789999876665


Q ss_pred             c---eEEEecC-C-CCeEEEEeccCCCCCCCCCceeEEeecC--CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc
Q psy14258        293 D---YETIANF-S-RPFAIHIYHRQKQPDALKPSTFLLYAKG--KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE  365 (440)
Q Consensus       293 ~---~~~~~~~-~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~--~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~  365 (440)
                      .   ..++... . ...++.+.           ++.|+++..  ...+|+.+++++. .  ...+++.......++++++
T Consensus       307 ~~~~~~l~~~~~~~~l~~~~~~-----------~~~lv~~~~~dg~~~l~~~~~~g~-~--~~~l~~~~~~~v~~~~~s~  372 (695)
T 2bkl_A          307 RASWKEIVPEDSSASLLSVSIV-----------GGHLSLEYLKDATSEVRVATLKGK-P--VRTVQLPGVGAASNLMGLE  372 (695)
T ss_dssp             GGGCEEEECCCSSCEEEEEEEE-----------TTEEEEEEEETTEEEEEEEETTCC-E--EEECCCSSSSEECCCBSCT
T ss_pred             ccCCeEEecCCCCCeEEEEEEE-----------CCEEEEEEEECCEEEEEEEeCCCC-e--eEEecCCCCeEEEEeecCC
Confidence            3   3344322 1 12233333           234444432  2356677776544 1  1112222222334566677


Q ss_pred             CCCEEEEEEC---CCCeEEEEecCCCCeEEEEE
Q psy14258        366 KEEYIYYAEL---TSYVIERRKMFGRGKEVVID  395 (440)
Q Consensus       366 ~~~~vy~~d~---~~~~I~r~~~~g~~~~~~~~  395 (440)
                      .++.++++-.   .-.+|+..++.+...+++-.
T Consensus       373 d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~  405 (695)
T 2bkl_A          373 DLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAK  405 (695)
T ss_dssp             TCSEEEEEEEETTEEEEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence            7777776532   23679999988655555543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.27  Score=51.88  Aligned_cols=335  Identities=9%  Similarity=-0.082  Sum_probs=170.6

Q ss_pred             eEEEecCCCcee-eee----ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeecccccc
Q psy14258         62 FGPMDIEEWDEG-LSF----LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG  136 (440)
Q Consensus        62 I~~~~l~~~~~~-~~~----~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p  136 (440)
                      |.+.+....... ...    .+....+.++..|.. +.||+.... +.|++.+........+......+. .+  .-..+
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~lwigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~-~l--~~~~i  213 (781)
T 3v9f_A          139 IEYLDIATGKFTHYNKSTVPALPSEQTWTATEAED-GKLYIGHVE-GGLSILSLNDKSVKHFVHDPQNPN-SL--PGNDV  213 (781)
T ss_dssp             EEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEET-TEEEEEETT-TEEEEEETTTTEEEEECC-----------CCSSE
T ss_pred             eeEEECCCCeEEeeccCcccCCCccceEEEEECCC-CCEEEEecC-CCeEEEcCCCCceEeeecCCCCcc-cC--CCCce
Confidence            777776544433 111    011223777877754 777776544 346665544322211100000000 00  11234


Q ss_pred             ce-eeeecCCcEEEe--ceEEEEecCCceEEEEEcC-------CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC
Q psy14258        137 TE-RFPMVTHKIVYP--EAIYFCTHYMEHCMIAIDL-------NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT  206 (440)
Q Consensus       137 ~~-avD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~-------~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~  206 (440)
                      .. ..|. .++|++.  +.+.+.+......+.+...       .......|..|+ .|.|++....   ..|.+.+.+..
T Consensus       214 ~~i~~d~-~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigt~~---~Gl~~~~~~~~  288 (781)
T 3v9f_A          214 RCIYKDT-NGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNKLWIATEL---NGIMILDLQQN  288 (781)
T ss_dssp             EEEEECT-TCCEEEEETTEEEEEETTTTEEEC-----------CCCCEEEEEECT-TSEEEEEESS---SCEEEEETTCC
T ss_pred             eEEEEcC-CCCEEEEeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCCEEEEeCC---CCeEEECCCCC
Confidence            55 6664 3446666  5677777765443322211       124578999998 6888887754   36888887765


Q ss_pred             CceeEEe-------c-----Cc--cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec------CCc--cCcee
Q psy14258        207 ERFPMVT-------H-----KI--VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK------GFP--VQNLY  264 (440)
Q Consensus       207 ~~~~l~~-------~-----~~--~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~------~~~--~~~p~  264 (440)
                      ....+..       .     .+  .....|..| ..+.|++.- ..+-|..++......+.+..      ...  .....
T Consensus       289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D-~~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQD-SFNNIWIGT-WGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             ---------CEEECBCSSTTSBSSSCEEEEEEC-SSCCEEEEE-BSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             eeeeeeccccccccCCCCCCCCCCCeEEEEEEe-CCCCEEEEe-cCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            4332221       0     11  235678888 566666654 34567777766554444321      111  22356


Q ss_pred             eeeEec-CEEEEEecCCCeEEEEeccCCCceEEEe--cCC--CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEc
Q psy14258        265 DITVFE-NNLFVTSWRNQSIIRVNKFNSDDYETIA--NFS--RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTF  339 (440)
Q Consensus       265 gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~~~--~~~--~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~  339 (440)
                      ++..+. +.||+... .+.|.++++.+++......  .+.  ....+...          +++.|+++... +.+.+++.
T Consensus       367 ~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d----------~~g~lWigt~~-~Gl~~~~~  434 (781)
T 3v9f_A          367 SVCDDGQGKLWIGTD-GGGINVFENGKRVAIYNKENRELLSNSVLCSLKD----------SEGNLWFGTYL-GNISYYNT  434 (781)
T ss_dssp             EEEECTTSCEEEEEB-SSCEEEEETTEEEEECC-----CCCSBEEEEEEC----------TTSCEEEEETT-EEEEEECS
T ss_pred             EEEEcCCCCEEEEeC-CCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC----------CCCCEEEEecc-CCEEEEcC
Confidence            676665 47777643 4568888765432211110  110  11122211          24556665432 56666665


Q ss_pred             CCCCCCceeeeeec----CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC-----CCCeeeEEEecCC
Q psy14258        340 KRDGTTEQAIMPIT----DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG-----IYNVEGMAVDWMA  410 (440)
Q Consensus       340 ~~~~~~~~~~~~~~----~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~-----~~~~~glAvD~~~  410 (440)
                      ...    . .....    ......++..|. ++.||++..  +-|++.+..+...+.+....     ...+..|+.|. .
T Consensus       435 ~~~----~-~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~  505 (781)
T 3v9f_A          435 RLK----K-FQIIELEKNELLDVRVFYEDK-NKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-E  505 (781)
T ss_dssp             SSC----E-EEECCSTTTCCCCEEEEEECT-TSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-T
T ss_pred             CCC----c-EEEeccCCCCCCeEEEEEECC-CCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-C
Confidence            433    1 11111    123456787876 466877754  67999998764444433222     24678899995 5


Q ss_pred             CcEEEEeCCCCeEEEEEeCC
Q psy14258        411 NNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       411 ~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ++||+...+.+ |.+++.++
T Consensus       506 g~lWigt~~~G-l~~~~~~~  524 (781)
T 3v9f_A          506 GRFWIGTFGGG-VGIYTPDM  524 (781)
T ss_dssp             CCEEEEESSSC-EEEECTTC
T ss_pred             CCEEEEEcCCC-EEEEeCCC
Confidence            67887765443 66666654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.25  E-value=0.25  Score=51.41  Aligned_cols=276  Identities=9%  Similarity=0.102  Sum_probs=153.6

Q ss_pred             ecCCcEEEe--------ceEEEEecCCceEEEEEcCC-C-----CCceEEEEcCCCCeEEEEEc-CCC-CCcEEEEeCCC
Q psy14258        142 MVTHKIVYP--------EAIYFCTHYMEHCMIAIDLN-L-----SKPRGIALDPTSGYMFFTKW-GAT-RPMLERSLLDG  205 (440)
Q Consensus       142 ~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~-~-----~~P~~iavd~~~g~lywtd~-~~~-~~~I~r~~~dG  205 (440)
                      +.++.+|++        ..+.+.+.++...++++... +     ....++++.|...+|.++.. +.. ...|...++++
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            668888887        26788887766666665421 1     13568899997777766643 221 12799999987


Q ss_pred             CCceeEEecCccCceEEEEeCCCCEEEEEeCCC---------------CcEEEEEccCCCc--EEEecCCc-cCceeeee
Q psy14258        206 TERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYL---------------DFIDRINYDGTDR--KTIRKGFP-VQNLYDIT  267 (440)
Q Consensus       206 ~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~---------------~~i~~~~~dG~~~--~~i~~~~~-~~~p~gl~  267 (440)
                      .....+..... ...+++..+.++.||++....               ..|+..++.+...  ..+..... -....+++
T Consensus       161 g~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~  239 (710)
T 2xdw_A          161 AKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE  239 (710)
T ss_dssp             TEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence            66544322221 245788988888999876432               2488888765432  34444211 12245666


Q ss_pred             Eec--CEEEEEec-C---CCeEEEEeccC------CC-ceEEEe-cCCCCeEEEEeccCCCCCCCCCceeEEeecCC--c
Q psy14258        268 VFE--NNLFVTSW-R---NQSIIRVNKFN------SD-DYETIA-NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK--P  331 (440)
Q Consensus       268 ~~~--~~ly~td~-~---~~~i~~~~~~~------g~-~~~~~~-~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~--~  331 (440)
                      +..  .+|+++.. .   ...|+.++..+      +. ....+. ....... .+.+        ..+.+++.++..  .
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~--------dg~~l~~~s~~~~~~  310 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN--------EGTVFTFKTNRHSPN  310 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE--------ETTEEEEEECTTCTT
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec--------cCCEEEEEECCCCCC
Confidence            654  47776654 2   46788888765      42 233332 2211111 1211        012333444321  3


Q ss_pred             cEEEEEEcCCCCCCceeeeeecCCC--CceEEEEEcCCCEEEEEECCC--CeEEEEec-CCCCeEEEEECCCCCeeeEEE
Q psy14258        332 AIIKGLTFKRDGTTEQAIMPITDLK--RPSVIDYHEKEEYIYYAELTS--YVIERRKM-FGRGKEVVIDTGIYNVEGMAV  406 (440)
Q Consensus       332 ~~I~~i~~~~~~~~~~~~~~~~~~~--~p~~l~~d~~~~~vy~~d~~~--~~I~r~~~-~g~~~~~~~~~~~~~~~glAv  406 (440)
                      .+|..+++++. ........+....  ...++++.+ +++++++-...  ..|++.++ +|.....+ ......+.++++
T Consensus       311 ~~l~~~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l-~~~~~~v~~~~~  387 (710)
T 2xdw_A          311 YRLINIDFTDP-EESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIF-PLEVGSVVGYSG  387 (710)
T ss_dssp             CEEEEEETTSC-CGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEE-CCCSSEEEEEEC
T ss_pred             CEEEEEeCCCC-CcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEec-CCCCceEEEEec
Confidence            57888888765 2111111112211  234566653 56777775433  46888888 55433333 333456677888


Q ss_pred             ecCCCcEEEEeC---CCCeEEEEEeCC
Q psy14258        407 DWMANNLYWTDA---GIGTINVAKISD  430 (440)
Q Consensus       407 D~~~~~lYwtd~---~~~~I~~~~~~g  430 (440)
                      +..+..|+++-.   .-.+|..+++..
T Consensus       388 s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          388 QKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             CTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            776777776632   236788888765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.25  E-value=0.15  Score=48.76  Aligned_cols=253  Identities=8%  Similarity=-0.118  Sum_probs=143.4

Q ss_pred             eEEEecCCCceeeeeec-ccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-e
Q psy14258         62 FGPMDIEEWDEGLSFLT-FAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-R  139 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~-~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-a  139 (440)
                      |...+++.......... ....+.++++.+.++.|+....+ +.|...++....  .+        ..+.  .....- +
T Consensus       115 v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~--~~--------~~~~--~~~~~v~~  181 (401)
T 4aez_A          115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVESQT--KL--------RTMA--GHQARVGC  181 (401)
T ss_dssp             EEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTCC--EE--------EEEC--CCSSCEEE
T ss_pred             EEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECcCCe--EE--------EEec--CCCCceEE
Confidence            77778775554422221 23348999999987776666544 666665554221  11        0111  111222 6


Q ss_pred             eeecCCcEEEe---ceEEEEecC-CceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC
Q psy14258        140 FPMVTHKIVYP---EAIYFCTHY-MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK  215 (440)
Q Consensus       140 vD~~~~~lY~~---~~I~~~~~d-g~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~  215 (440)
                      +.|.++.|+..   +.|.+.++. +......+........++++.|....|+.....   +.|...++........+...
T Consensus       182 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~  258 (401)
T 4aez_A          182 LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND---NVVQIWDARSSIPKFTKTNH  258 (401)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTCSSEEEEECCC
T ss_pred             EEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC---CeEEEccCCCCCccEEecCC
Confidence            77755544443   788888887 333333334455678999999954445444433   58888888764443333333


Q ss_pred             ccCceEEEEeCCCCEEEEEeC--CCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEe-cCCCeEEEEeccC
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDT--YLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTS-WRNQSIIRVNKFN  290 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~--~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td-~~~~~i~~~~~~~  290 (440)
                      ......+++.+.+..++.+-.  ..+.|...++...........  -.....+++..+  .++.+. ...+.|...+..+
T Consensus       259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            456788999987888888754  577898888865444333332  234667777543  555543 2467777777655


Q ss_pred             CCceEEE--ec-CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC
Q psy14258        291 SDDYETI--AN-FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD  342 (440)
Q Consensus       291 g~~~~~~--~~-~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~  342 (440)
                      ++.....  .. ......+.+.          |++.++++-+..+.|+..++...
T Consensus       337 ~~~~~~~~~~~h~~~v~~~~~s----------~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          337 SGLTKQVDIPAHDTRVLYSALS----------PDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             TEEEEEEEEECCSSCCCEEEEC----------TTSSEEEEECTTSEEEEEECCC-
T ss_pred             ccceeEEEecCCCCCEEEEEEC----------CCCCEEEEEeCCCcEEEEECCCC
Confidence            5433322  12 1233444333          33333333344477777777554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.24  E-value=0.12  Score=47.64  Aligned_cols=258  Identities=9%  Similarity=0.037  Sum_probs=143.0

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCce----EEEEEcCCCCCceEEEEcCCCC-eEEEEEcCCCCCcEEEEeC-C
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEH----CMIAIDLNLSKPRGIALDPTSG-YMFFTKWGATRPMLERSLL-D  204 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~----~~~~~~~~~~~P~~iavd~~~g-~lywtd~~~~~~~I~r~~~-d  204 (440)
                      .+.+ ++.+.+..|+.+   +.|.+.+++...    ...+. ........+++.|... +|+.....   +.|...++ +
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~   88 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQ---GEILKVDLIG   88 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETT---SCEEEECSSS
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCC---CeEEEEEecc
Confidence            3555 666666655555   678887776544    33333 2446788999999655 56665544   58999998 7


Q ss_pred             CCCceeEEec--CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC---------CC-cEEEecCCccCceeeeeEecCE
Q psy14258        205 GTERFPMVTH--KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG---------TD-RKTIRKGFPVQNLYDITVFENN  272 (440)
Q Consensus       205 G~~~~~l~~~--~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG---------~~-~~~i~~~~~~~~p~gl~~~~~~  272 (440)
                      +.....+ ..  .-.....+++.+ ++.|+.+ ...+.|...++..         .. ...+ .  .-..+..+++..+.
T Consensus        89 ~~~~~~~-~~~~~~~~v~~l~~~~-~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           89 SPSFQAL-TNNEANLGICRICKYG-DDKLIAA-SWDGLIEVIDPRNYGDGVIAVKNLNSNNT-K--VKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSEEEC-BSCCCCSCEEEEEEET-TTEEEEE-ETTSEEEEECHHHHTTBCEEEEESCSSSS-S--SCCCEEEEEECSSE
T ss_pred             CCceEec-cccCCCCceEEEEeCC-CCEEEEE-cCCCeEEEEcccccccccccccCCeeeEE-e--eCCceEEEEecCCc
Confidence            6544333 22  334567899987 5555555 4567788877643         11 1111 1  12356788888887


Q ss_pred             EEEEecCCCeEEEEeccC-CCce-E-EEecCC-CCeEEEEeccCCCCCCCCC-ceeEEeecCCccEEEEEEcCCCCC---
Q psy14258        273 LFVTSWRNQSIIRVNKFN-SDDY-E-TIANFS-RPFAIHIYHRQKQPDALKP-STFLLYAKGKPAIIKGLTFKRDGT---  344 (440)
Q Consensus       273 ly~td~~~~~i~~~~~~~-g~~~-~-~~~~~~-~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~~~~I~~i~~~~~~~---  344 (440)
                      ++.. ...+.|...+..+ +... . ...... .+..+.+.          | ++.++++-+..+.|...+++..+.   
T Consensus       163 l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~----------~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          163 LIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL----------PKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC----------SGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             EEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEEC----------CCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            5554 4567788778765 4432 2 222222 23344333          3 322333333347787777655410   


Q ss_pred             -CceeeeeecC--------CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC-CCCeeeEEEecCCCcEE
Q psy14258        345 -TEQAIMPITD--------LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG-IYNVEGMAVDWMANNLY  414 (440)
Q Consensus       345 -~~~~~~~~~~--------~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~-~~~~~glAvD~~~~~lY  414 (440)
                       .....+....        .....+++|++.++.|+.+. ..+.|+..++........+... -..+..|+  ..++.|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~  308 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILC  308 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEE
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEE
Confidence             1111111111        11566899999877665444 6788998888754332222222 34566777  4455444


Q ss_pred             EE
Q psy14258        415 WT  416 (440)
Q Consensus       415 wt  416 (440)
                      .+
T Consensus       309 s~  310 (342)
T 1yfq_A          309 LA  310 (342)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.12  Score=46.95  Aligned_cols=265  Identities=9%  Similarity=0.024  Sum_probs=150.0

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc--
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER--  208 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~--  208 (440)
                      .... ++ +.++.|+.+   +.|.+.+++.......+.........+++.|....|+.....   +.|...++.....  
T Consensus        20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~~~~~~~~~~   95 (313)
T 3odt_A           20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD---TMINGVPLFATSGED   95 (313)
T ss_dssp             CEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT---SCEEEEETTCCTTSC
T ss_pred             CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC---CeEEEEEeeecCCCC
Confidence            3444 55 445444444   678888887766555555456778999999966666665544   4677666654321  


Q ss_pred             -eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEE
Q psy14258        209 -FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIR  285 (440)
Q Consensus       209 -~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~  285 (440)
                       ...+.........++++  ++.|+.+. ..+.|...+ .+.....+...  ......+++..  +..+++-...+.|..
T Consensus        96 ~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~~~d-~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~i  169 (313)
T 3odt_A           96 PLYTLIGHQGNVCSLSFQ--DGVVISGS-WDKTAKVWK-EGSLVYNLQAH--NASVWDAKVVSFSENKFLTASADKTIKL  169 (313)
T ss_dssp             C-CEECCCSSCEEEEEEE--TTEEEEEE-TTSEEEEEE-TTEEEEEEECC--SSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cccchhhcccCEEEEEec--CCEEEEEe-CCCCEEEEc-CCcEEEecccC--CCceeEEEEccCCCCEEEEEECCCCEEE
Confidence             11122223345667774  55555554 456677766 33222222222  23455666543  344444445677766


Q ss_pred             EeccCCCceEEEec-CC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEEE
Q psy14258        286 VNKFNSDDYETIAN-FS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVID  362 (440)
Q Consensus       286 ~~~~~g~~~~~~~~-~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~  362 (440)
                      .+  .++....+.. .. ....+.+.          |++.++.+ +..+.|+..++...    .....+. ......+++
T Consensus       170 ~d--~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~-~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~  232 (313)
T 3odt_A          170 WQ--NDKVIKTFSGIHNDVVRHLAVV----------DDGHFISC-SNDGLIKLVDMHTG----DVLRTYEGHESFVYCIK  232 (313)
T ss_dssp             EE--TTEEEEEECSSCSSCEEEEEEE----------ETTEEEEE-ETTSEEEEEETTTC----CEEEEEECCSSCEEEEE
T ss_pred             Ee--cCceEEEEeccCcccEEEEEEc----------CCCeEEEc-cCCCeEEEEECCch----hhhhhhhcCCceEEEEE
Confidence            66  2222223322 22 23334333          23333333 33478888887654    2222222 233567899


Q ss_pred             EEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        363 YHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       363 ~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +.+.+ ++ ++-...+.|+..++........+...-..+..+++.+.+. | .+-...+.|.+.+++.
T Consensus       233 ~~~~~-~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          233 LLPNG-DI-VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-I-IVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             ECTTS-CE-EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-E-EEEETTSCEEEEESCG
T ss_pred             EecCC-CE-EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-E-EEEeCCCcEEEEeCCC
Confidence            99876 44 4555688999999876554444454556788999987665 4 4545578899999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.21  E-value=0.18  Score=48.92  Aligned_cols=262  Identities=9%  Similarity=0.041  Sum_probs=147.1

Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK  215 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~  215 (440)
                      ++.+.++.|+.+   +.|.+.+++.......+........+++.++  ..|+.....   +.|...++........+...
T Consensus       164 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          164 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRD---ATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TEEEEEETT---SEEEEEESSSCCEEEEEECC
T ss_pred             EEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC--CEEEEEeCC---CEEEEEECCCCcEEEEEcCC
Confidence            444445534433   6899999876655444444445677888865  455555544   57888888654433333333


Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceE
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      ......+++|  +..|+.+. ..+.|...++..........+ .......+++.+..++... .++.|...+..+++...
T Consensus       239 ~~~v~~~~~~--~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~  313 (445)
T 2ovr_B          239 VAAVRCVQYD--GRRVVSGA-YDFMVKVWDPETETCLHTLQG-HTNRVYSLQFDGIHVVSGS-LDTSIRVWDVETGNCIH  313 (445)
T ss_dssp             SSCEEEEEEC--SSCEEEEE-TTSCEEEEEGGGTEEEEEECC-CSSCEEEEEECSSEEEEEE-TTSCEEEEETTTCCEEE
T ss_pred             cccEEEEEEC--CCEEEEEc-CCCEEEEEECCCCcEeEEecC-CCCceEEEEECCCEEEEEe-CCCeEEEEECCCCCEEE
Confidence            3455667763  55555554 567788888754433222222 1234567777555665554 47788888887776555


Q ss_pred             EEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec----CCCCceEEEEEcCCCEE
Q psy14258        296 TIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT----DLKRPSVIDYHEKEEYI  370 (440)
Q Consensus       296 ~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~----~~~~p~~l~~d~~~~~v  370 (440)
                      .+.... ....+...           +.+|+.+ +..+.|+..++...    .....+.    ......+++++  ++. 
T Consensus       314 ~~~~~~~~v~~~~~~-----------~~~l~~~-~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~--~~~-  374 (445)
T 2ovr_B          314 TLTGHQSLTSGMELK-----------DNILVSG-NADSTVKIWDIKTG----QCLQTLQGPNKHQSAVTCLQFN--KNF-  374 (445)
T ss_dssp             EECCCCSCEEEEEEE-----------TTEEEEE-ETTSCEEEEETTTC----CEEEEECSTTSCSSCEEEEEEC--SSE-
T ss_pred             EEcCCcccEEEEEEe-----------CCEEEEE-eCCCeEEEEECCCC----cEEEEEccCCCCCCCEEEEEEC--CCE-
Confidence            443322 22233221           2234433 33478888887544    1222222    22235577776  344 


Q ss_pred             EEEECCCCeEEEEecCCCCe-EEEEE----CCCCCeeeEEEecCCCcEEEEeCCCC----eEEEEEeCC
Q psy14258        371 YYAELTSYVIERRKMFGRGK-EVVID----TGIYNVEGMAVDWMANNLYWTDAGIG----TINVAKISD  430 (440)
Q Consensus       371 y~~d~~~~~I~r~~~~g~~~-~~~~~----~~~~~~~glAvD~~~~~lYwtd~~~~----~I~~~~~~g  430 (440)
                      .++-...+.|...++..... ..+..    ..-..+..+++++.+. +..+-...+    .|.+.+++.
T Consensus       375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE-EEEEcccCCCCccEEEEEECCC
Confidence            44555688899888875432 33321    1224578889986544 334433344    499999886

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.20  E-value=0.15  Score=47.90  Aligned_cols=237  Identities=7%  Similarity=-0.090  Sum_probs=137.8

Q ss_pred             ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe----cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC
Q psy14258        174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT----HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT  249 (440)
Q Consensus       174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~----~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~  249 (440)
                      ..+++..| .++|.-+...   +.|...+++.........    .--.....+++.+.+.+|.-+. ..+.|..-++...
T Consensus        85 v~~~~~s~-d~~l~~~s~d---g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-~d~~i~iwd~~~~  159 (344)
T 4gqb_B           85 VADLTWVG-ERGILVASDS---GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-KDICIKVWDLAQQ  159 (344)
T ss_dssp             EEEEEEET-TTEEEEEETT---SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTT
T ss_pred             EEEEEEeC-CCeEEEEECC---CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-CCCeEEEEECCCC
Confidence            34666666 3555544333   466666665333222111    1123467888987776666554 4567888877644


Q ss_pred             CcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCC---CCeEEEEeccCCCCCCCCCceeE
Q psy14258        250 DRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFS---RPFAIHIYHRQKQPDALKPSTFL  324 (440)
Q Consensus       250 ~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~---~p~~~~v~~~~~qp~~~~~~~~l  324 (440)
                      .......+ .......+++..+  .++.+-...+.|...+..+++....+....   .+..+... +.        +..+
T Consensus       160 ~~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-p~--------~~~~  229 (344)
T 4gqb_B          160 VVLSSYRA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH-PQ--------QSEV  229 (344)
T ss_dssp             EEEEEECC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC-SS--------CTTE
T ss_pred             cEEEEEcC-cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec-CC--------CCcc
Confidence            33333332 1234566776543  677777777888888887777665443211   23334333 11        2334


Q ss_pred             EeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeee
Q psy14258        325 LYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG  403 (440)
Q Consensus       325 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~g  403 (440)
                      +++-+..+.|+..++...    .....+.+ -....+++|.+.+..+..+-...++|+..++...... .....-+.+..
T Consensus       230 l~sg~~dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~  304 (344)
T 4gqb_B          230 FVFGDENGTVSLVDTKST----SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD  304 (344)
T ss_dssp             EEEEETTSEEEEEESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred             eEEeccCCcEEEEECCCC----cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence            444344478888887654    22222332 2345689999987666666667888988887654222 22233457899


Q ss_pred             EEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        404 MAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       404 lAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      |++.+.++.|..+-...++|.+-++..
T Consensus       305 v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          305 ATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             EEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            999888888887766678888887765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.17  E-value=0.14  Score=47.09  Aligned_cols=284  Identities=8%  Similarity=-0.025  Sum_probs=150.4

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+|+|++..+.+..+-...+.|+.-++........     .+...+......+.. ++.+.+..|+.+   +.|...+
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-----~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~  114 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-----IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD  114 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-----eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence            3999999988777777777777777666654321110     000112222334555 676666655544   6777777


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-ccCceEEEEeCCCC-EEEEEe
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-IVYPYGVTVDFPTK-HVYWVD  235 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-~~~P~gl~vD~~~~-~ly~~d  235 (440)
                      ...................+...+....|+.....   +.+...++.+.......... ......+++.+... .++.+-
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~  191 (340)
T 4aow_A          115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD---KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC  191 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             ecccceeeeecCCCCceeEEEEeecCccceeecCC---CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence            77766655555455667777777755555544433   46666666655443332221 22345566654443 344444


Q ss_pred             CCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCC
Q psy14258        236 TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQ  314 (440)
Q Consensus       236 ~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~q  314 (440)
                      ...+.|...++..........+. -.....+++..+ .++++-..++.|...+..+++....+........+. ++    
T Consensus       192 ~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~----  265 (340)
T 4aow_A          192 GWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC-FS----  265 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE-EC----
T ss_pred             cCCCEEEEEECCCCceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee-cC----
Confidence            45567777776554433333321 234567777654 455555567777777776655444443322222232 22    


Q ss_pred             CCCCCCceeEEeecCCccEEEEEEcCCCCCCc-----eeeeee-cCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        315 PDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE-----QAIMPI-TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       315 p~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~-----~~~~~~-~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                           |+.+++.+.. .+.|+..++.+.....     ...... .......+++|.+.++.|+-+ ...+.|+.-++.
T Consensus       266 -----~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~Dg~v~iW~~~  336 (340)
T 4aow_A          266 -----PNRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG-YTDNLVRVWQVT  336 (340)
T ss_dssp             -----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE-ETTSCEEEEEEE
T ss_pred             -----CCCceeeccC-CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEeCC
Confidence                 2333433322 3677777776541000     000000 111234689999987766544 356777666554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.15  E-value=0.15  Score=53.46  Aligned_cols=117  Identities=7%  Similarity=-0.088  Sum_probs=72.1

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCC-----CceEEEEcCCCCeEEEEEcCCC------CCcEE
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLS-----KPRGIALDPTSGYMFFTKWGAT------RPMLE  199 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~-----~P~~iavd~~~g~lywtd~~~~------~~~I~  199 (440)
                      .|.. .+-|..+.-|++   +.|...++++..+++++.....     ...++++.|...+|.++.....      .+.++
T Consensus        16 ~~~~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            4556 666765433433   7899999988777777664321     2244788997667777653210      13677


Q ss_pred             EEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEE
Q psy14258        200 RSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI  254 (440)
Q Consensus       200 r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i  254 (440)
                      ..++.+...+.+.. ....-...++.|.+++|.++.  .+.|+..+.+++....+
T Consensus        96 ~~d~~~~~~~~l~~-~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           96 IYDLNKRQLITEER-IPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEETTTTEECCSSC-CCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEEC
T ss_pred             EEECCCCcEEEccc-CCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCceEEE
Confidence            88888765444322 122345677888888887774  35688777766555444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=0.36  Score=50.87  Aligned_cols=315  Identities=8%  Similarity=-0.090  Sum_probs=167.3

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceee-------ccccccceeeccccccce-eeeecCCcEEEe---
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFT-------KWGATRPMLERSLLDGTE-RFPMVTHKIVYP---  150 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---  150 (440)
                      .+.+|..|. ++.||+.... +.|.+++........+..       ......   .-.-..+.. ..|.. ++|++.   
T Consensus       259 ~i~~i~~d~-~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~l~~~~v~~i~~D~~-g~lWigt~~  332 (781)
T 3v9f_A          259 YIFSIKQLK-DNKLWIATEL-NGIMILDLQQNQFLLPEQIRFEFIREGDNNY---SLSNASARYIFQDSF-NNIWIGTWG  332 (781)
T ss_dssp             CEEEEEECT-TSEEEEEESS-SCEEEEETTCC---------CEEECBCSSTT---SBSSSCEEEEEECSS-CCEEEEEBS
T ss_pred             eEEEEEECC-CCCEEEEeCC-CCeEEECCCCCeeeeeeccccccccCCCCCC---CCCCCeEEEEEEeCC-CCEEEEecC
Confidence            378888875 4667776653 346665554332221100       000000   001123556 67754 446665   


Q ss_pred             ceEEEEecCCceEEEEEc-------CC--CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe---cCccC
Q psy14258        151 EAIYFCTHYMEHCMIAID-------LN--LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT---HKIVY  218 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~-------~~--~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~---~~~~~  218 (440)
                      +.|.+.+......+....       ..  .....+|+.|+ .|.||+...+   ..|.+.+.+....+.+..   .....
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt~~---~Gl~~~~~~~~~~~~~~~~~~~~~~~  408 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLWIGTDG---GGINVFENGKRVAIYNKENRELLSNS  408 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSCEEEEEBS---SCEEEEETTEEEEECC-----CCCSB
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCCEEEEeCC---CcEEEEECCCCeEEEccCCCCCCCcc
Confidence            567777776544333321       11  24578999998 6889887755   368888775432221111   01234


Q ss_pred             ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeeeEec-CEEEEEecCCCeEEEEeccCCCceEE
Q psy14258        219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNSDDYET  296 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~  296 (440)
                      ...|..| ..++|++... .+.+.+++......+.+.. .........+..+. +.||+...  +.|.++++.+++....
T Consensus       409 v~~i~~d-~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          409 VLCSLKD-SEGNLWFGTY-LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHH  484 (781)
T ss_dssp             EEEEEEC-TTSCEEEEET-TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEE
T ss_pred             eEEEEEC-CCCCEEEEec-cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEec
Confidence            5678888 5677777643 3467777765443333221 11123456777664 47777754  6789998876655443


Q ss_pred             EecC------CCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceee-ee-ecCC--CCceEEEEEcC
Q psy14258        297 IANF------SRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAI-MP-ITDL--KRPSVIDYHEK  366 (440)
Q Consensus       297 ~~~~------~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~-~~-~~~~--~~p~~l~~d~~  366 (440)
                      ....      ..+..+...          +++.|.++... +.+.+++.++.    ... .. ..++  ....+|..|..
T Consensus       485 ~~~~~~~~~~~~i~~i~~d----------~~g~lWigt~~-~Gl~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~  549 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQD----------SEGRFWIGTFG-GGVGIYTPDMQ----LVRKFNQYEGFCSNTINQIYRSSK  549 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEEC----------TTCCEEEEESS-SCEEEECTTCC----EEEEECTTTTCSCSCEEEEEECTT
T ss_pred             ccCcccccccceeEEEEEc----------CCCCEEEEEcC-CCEEEEeCCCC----eEEEccCCCCCCCCeeEEEEECCC
Confidence            3211      112233222          34566666542 34666665443    111 11 1122  23457877765


Q ss_pred             CCEEEEEECCCCeEEEEecCCCCeEEEEE-CCC--CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        367 EEYIYYAELTSYVIERRKMFGRGKEVVID-TGI--YNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       367 ~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~~~--~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                       +.|+++.. .+.|++.+......+.+.. .++  ..+.+|+.|. .++||++.  .+.|.+++++.
T Consensus       550 -g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~-~g~lW~~t--~~Gl~~~~~~~  611 (781)
T 3v9f_A          550 -GQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDK-NGNIWAST--NTGISCYITSK  611 (781)
T ss_dssp             -SCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECS-SSCEEEEC--SSCEEEEETTT
T ss_pred             -CCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECC-CCCEEEEc--CCceEEEECCC
Confidence             55777654 5555888887644433321 233  3467899995 66788875  34577777765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.10  E-value=0.18  Score=46.85  Aligned_cols=268  Identities=7%  Similarity=-0.055  Sum_probs=146.4

Q ss_pred             cccce-eeeecC--CcEEEe----ceEEEEecCC--ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC
Q psy14258        134 LDGTE-RFPMVT--HKIVYP----EAIYFCTHYM--EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD  204 (440)
Q Consensus       134 ~~p~~-avD~~~--~~lY~~----~~I~~~~~dg--~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d  204 (440)
                      ..... ++.+..  +++.++    +.|.+.+++.  ......+.........+++.|...+|+.....   +.|...+++
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~  116 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD---KTAKMWDLS  116 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT---SEEEEEETT
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC---CcEEEEEcC
Confidence            34555 666654  344544    6788888874  43323334445678999999955556655544   588888887


Q ss_pred             CCCceeEEecCccCceEEEE--eCCCCEEEEEeCCCCcEEEEEccCCC-cEEEecCCccCceeeeeEecCEEEEEecCCC
Q psy14258        205 GTERFPMVTHKIVYPYGVTV--DFPTKHVYWVDTYLDFIDRINYDGTD-RKTIRKGFPVQNLYDITVFENNLFVTSWRNQ  281 (440)
Q Consensus       205 G~~~~~l~~~~~~~P~gl~v--D~~~~~ly~~d~~~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~  281 (440)
                      ......+.. .-.....+++  ++. ++++++-...+.|...++.... ...+...   .....+....+.++.... .+
T Consensus       117 ~~~~~~~~~-~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~  190 (368)
T 3mmy_A          117 SNQAIQIAQ-HDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMVLQLP---ERCYCADVIYPMAVVATA-ER  190 (368)
T ss_dssp             TTEEEEEEE-CSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEEEECS---SCEEEEEEETTEEEEEEG-GG
T ss_pred             CCCceeecc-ccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEEEecC---CCceEEEecCCeeEEEeC-CC
Confidence            665444332 2345677887  544 4444444456788888875433 3333322   245566666666665553 45


Q ss_pred             eEEEEeccCCCceEE-Eec-CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC---
Q psy14258        282 SIIRVNKFNSDDYET-IAN-FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK---  356 (440)
Q Consensus       282 ~i~~~~~~~g~~~~~-~~~-~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~---  356 (440)
                      .+...+......... +.. ...........+..+.     ....+++-+..+.|...+++.. ........+....   
T Consensus       191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----KPTGFALGSIEGRVAIHYINPP-NPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----CEEEEEEEETTSEEEEEESSCS-CHHHHSEEEECSEEC-
T ss_pred             cEEEEEeccccchhhhccccccCCCceEEEcccCCC-----CCCeEEEecCCCcEEEEecCCC-Cccccceeeeeeeccc
Confidence            555555543322221 111 1122222211111110     1122333333478888887665 1100111111111   


Q ss_pred             ----------CceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEe
Q psy14258        357 ----------RPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTD  417 (440)
Q Consensus       357 ----------~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd  417 (440)
                                ...++++++.++.|+.+ ...+.|+..++........+...-..+..|++.+.+..|..+.
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATV-GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEE-ETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred             ccccccccccceEEEEEecCCCEEEEE-ccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence                      36689999987766554 4678899999885433333333345688999998888777774

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.08  E-value=0.4  Score=50.59  Aligned_cols=332  Identities=9%  Similarity=-0.064  Sum_probs=177.3

Q ss_pred             eEEEecCCCcee-eee------ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeecccc
Q psy14258         62 FGPMDIEEWDEG-LSF------LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL  134 (440)
Q Consensus        62 I~~~~l~~~~~~-~~~------~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  134 (440)
                      |.+++....... ...      .+....+.++..|.. +.|++....  .|.+.+........+......+.. +  ...
T Consensus       237 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~~~~-l--~~~  310 (795)
T 4a2l_A          237 LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQ-NRLWIGTFN--DLNIYHEGTDSFASYSSNPVENGS-L--SQR  310 (795)
T ss_dssp             EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTT-SCEEEEESS--CEEEEETTTTEEEEECCCTTSTTS-C--SSS
T ss_pred             eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCC-CCEEEEeCC--hhheEcCCCCeEEEEecCCCCCCC-C--CCC
Confidence            777776654333 111      112223888888854 667776643  455554432221111000000000 0  113


Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEc----CC--CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAID----LN--LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD  204 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~----~~--~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d  204 (440)
                      .... ..|.. ++|++.   +.|.+.+......+.+..    ..  -....+|+.|+ .|.|++...+   +.|.+.+..
T Consensus       311 ~i~~i~~D~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~lWiGt~~---~Gl~~~~~~  385 (795)
T 4a2l_A          311 SVRSIFMDSQ-GGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNLWIGTND---GGLNLYNPI  385 (795)
T ss_dssp             CEEEEEECTT-SCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCEEEEESS---SCEEEECTT
T ss_pred             cEEEEEEeCC-cCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCEEEEECC---CCeEEEcCC
Confidence            4556 67754 446665   567777765543333321    11  23578999998 6888887655   378888776


Q ss_pred             CCCceeEEec--------CccCceEEEEeCCCCE-EEEEeCCCCcEEEEEccCCCcEEEecC-C--ccCceeeeeEec-C
Q psy14258        205 GTERFPMVTH--------KIVYPYGVTVDFPTKH-VYWVDTYLDFIDRINYDGTDRKTIRKG-F--PVQNLYDITVFE-N  271 (440)
Q Consensus       205 G~~~~~l~~~--------~~~~P~gl~vD~~~~~-ly~~d~~~~~i~~~~~dG~~~~~i~~~-~--~~~~p~gl~~~~-~  271 (440)
                      ....+.+...        .......|+.| ..++ |+++- ..+.|.+++......+.+... .  .......+..+. +
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~~lWigt-~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  463 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVD-EKKSLVYIGT-HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG  463 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEE-TTTTEEEEEE-TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEc-CCCCEEEEEe-CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC
Confidence            5433333211        12345678888 5566 66554 445688888776555444321 0  123456676664 4


Q ss_pred             EEEEEecCCCeEEEEeccCCCceEEEec-----CC--CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC
Q psy14258        272 NLFVTSWRNQSIIRVNKFNSDDYETIAN-----FS--RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT  344 (440)
Q Consensus       272 ~ly~td~~~~~i~~~~~~~g~~~~~~~~-----~~--~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~  344 (440)
                      .||++..  +.+.++++.+++.......     +.  ....+..          ++++.|+++..  +.+.+++.+..  
T Consensus       464 ~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~----------d~~g~lWigt~--~Gl~~~~~~~~--  527 (795)
T 4a2l_A          464 NLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR----------DSHKRLWIGGE--EGLSVFKQEGL--  527 (795)
T ss_dssp             CEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE----------CTTCCEEEEES--SCEEEEEEETT--
T ss_pred             CEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEE----------CCCCCEEEEeC--CceEEEeCCCC--
Confidence            7877764  5688888765533322111     10  1122221          13466777665  56777776544  


Q ss_pred             Cceeeee----ecCC--CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-CCC--CCeeeEEEecCCCcEEE
Q psy14258        345 TEQAIMP----ITDL--KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID-TGI--YNVEGMAVDWMANNLYW  415 (440)
Q Consensus       345 ~~~~~~~----~~~~--~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~~~--~~~~glAvD~~~~~lYw  415 (440)
                        .....    ..++  ....+|..|.. +.|+++..  +-|++.+......+.+.. .++  ..+.+|+.|. .++||+
T Consensus       528 --~~~~~~~~~~~~l~~~~i~~i~~d~~-g~lWigT~--~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~-~g~lWi  601 (795)
T 4a2l_A          528 --DIQKASILPVSNVTKLFTNCIYEASN-GIIWVGTR--EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDS-FGRLWL  601 (795)
T ss_dssp             --EEEECCCSCSCGGGGSCEEEEEECTT-SCEEEEES--SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECT-TSCEEE
T ss_pred             --eEEEecCCCCCCCCCCeeEEEEECCC-CCEEEEeC--CCceeECCCCCcEEEeCCCCCCchhheEEEEECC-CCCEEE
Confidence              11100    0111  24557888875 55777654  378999887643333221 233  3467899995 567888


Q ss_pred             EeCCCCeEEEEEeCC
Q psy14258        416 TDAGIGTINVAKISD  430 (440)
Q Consensus       416 td~~~~~I~~~~~~g  430 (440)
                      +.  .+.|.+++++.
T Consensus       602 ~t--~~Gl~~~~~~~  614 (795)
T 4a2l_A          602 ST--NRGISCFNPET  614 (795)
T ss_dssp             EE--TTEEEEEETTT
T ss_pred             Ec--CCceEEEcCCC
Confidence            76  35677777765

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.06  E-value=0.00014  Score=48.98  Aligned_cols=31  Identities=26%  Similarity=0.682  Sum_probs=27.5

Q ss_pred             ccCCC-CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         15 DECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        15 ~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      |||.. ++.|+|.|.|++|+|.|. ++||.|..
T Consensus         2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~   34 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD   34 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETTEEEEECCTTEEECT
T ss_pred             ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECC
Confidence            68874 678999999999999999 99999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.05  E-value=0.2  Score=46.67  Aligned_cols=270  Identities=11%  Similarity=0.058  Sum_probs=150.3

Q ss_pred             cccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce
Q psy14258        134 LDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF  209 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~  209 (440)
                      ....+ ++.+.++.|.-+   +.|.+-++........+.........+++.|...+|......   +.|...++......
T Consensus        56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~  132 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD---NICSIYNLKTREGN  132 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT---CEEEEEETTTCSBS
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC---CeEEEEECccCCCc
Confidence            34455 555555434333   678888876544443334444567899999965555544443   57777777543211


Q ss_pred             -eE---EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEE
Q psy14258        210 -PM---VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSII  284 (440)
Q Consensus       210 -~l---~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~  284 (440)
                       .+   +.........+.+. ..++|+.+ ...+.|...++..........+ .......+++..+ .++.+-...+.|.
T Consensus       133 ~~~~~~~~~h~~~v~~~~~~-~~~~l~s~-s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~~d~~v~  209 (340)
T 1got_B          133 VRVSRELAGHTGYLSCCRFL-DDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             CEEEEEEECCSSCEEEEEEE-ETTEEEEE-ETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ceeEEEecCCCccEEEEEEC-CCCcEEEE-ECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEE
Confidence             11   11122234455554 34455444 3556777777654333322322 1234567777654 5666666678888


Q ss_pred             EEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec--C-CCCceE
Q psy14258        285 RVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT--D-LKRPSV  360 (440)
Q Consensus       285 ~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~--~-~~~p~~  360 (440)
                      ..+..+++....+..-. ....+.+.          |++.++++-+..+.|+..++...    .......  . ......
T Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~----------p~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          210 LWDVREGMCRQTFTGHESDINAICFF----------PNGNAFATGSDDATCRLFDLRAD----QELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEETTTCSEEEEECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTT----EEEEEECCTTCCSCEEE
T ss_pred             EEECCCCeeEEEEcCCcCCEEEEEEc----------CCCCEEEEEcCCCcEEEEECCCC----cEEEEEccCCcccceEE
Confidence            88877766555554322 33444433          34334444444578888887654    1111111  1 123568


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINV  425 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~  425 (440)
                      ++|.+.+..+. +-...+.|...++........+...-..+..|++.+.+..|.-. ...++|.+
T Consensus       276 ~~~s~~g~~l~-~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~-s~D~~i~i  338 (340)
T 1got_B          276 VSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG-SWDSFLKI  338 (340)
T ss_dssp             EEECTTSSEEE-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSCEEE
T ss_pred             EEECCCCCEEE-EECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE-cCCccEEe
Confidence            99999877554 44567889888876544444444445678889998766544433 33444543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.96  E-value=0.23  Score=45.86  Aligned_cols=281  Identities=10%  Similarity=0.023  Sum_probs=149.5

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.++++.+....+..+-...+.|+.-++...... .    ..+...+...-..... ++.+.++.|+-+   +.|.+.+
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-~----~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-F----GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-E----EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-c----cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            38888888766566677666677765555422111 0    0011112223334555 666666544444   6888888


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCC-----CEEE
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT-----KHVY  232 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~-----~~ly  232 (440)
                      +....+...+........+++++|. +.++.+-...  +.|...++.+.....+.. .......+.+.+..     +.++
T Consensus        94 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D--~~i~vwd~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~l  169 (319)
T 3frx_A           94 VATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRD--KTIKVWTIKGQCLATLLG-HNDWVSQVRVVPNEKADDDSVTI  169 (319)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTT-SCEEEEEETT--SCEEEEETTSCEEEEECC-CSSCEEEEEECCC------CCEE
T ss_pred             CCCCCeeEEEccCCCcEEEEEEcCC-CCEEEEEeCC--CeEEEEECCCCeEEEEec-cCCcEEEEEEccCCCCCCCccEE
Confidence            8765544334445567889999995 4444443333  578888887654433321 22344556665432     2244


Q ss_pred             EEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEecc
Q psy14258        233 WVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHR  311 (440)
Q Consensus       233 ~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~  311 (440)
                      .+-...+.|..-++..........+ .......+++..+ .+..+-...+.|...+..+++....+........+.+.  
T Consensus       170 ~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s--  246 (319)
T 3frx_A          170 ISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS--  246 (319)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEEC--
T ss_pred             EEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEc--
Confidence            4444566777777654433322222 1234567777654 55555556778887787666555444433333444333  


Q ss_pred             CCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeec-----CCCCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        312 QKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-----DLKRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       312 ~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-----~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                              |+ .+|..+..  ..|...+++.............     .-....+++|.+.++.|+-. ...+.|+.-++
T Consensus       247 --------p~~~~la~~~~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg-~~Dg~i~vWd~  315 (319)
T 3frx_A          247 --------PNRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG-YTDNVIRVWQV  315 (319)
T ss_dssp             --------SSSSEEEEEET--TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE-ETTSCEEEEEE
T ss_pred             --------CCCCEEEEEcC--CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe-ecCceEEEEEE
Confidence                    33 33444433  4566666554300000000000     11234589999988866544 45667665554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.96  E-value=0.49  Score=49.52  Aligned_cols=275  Identities=7%  Similarity=-0.017  Sum_probs=150.2

Q ss_pred             eecCCcEEEe--------ceEEEEecC---CceEEEEEcCC-C-----CCceEEEEcCCCCeEEEEEcC--CCCCcEEEE
Q psy14258        141 PMVTHKIVYP--------EAIYFCTHY---MEHCMIAIDLN-L-----SKPRGIALDPTSGYMFFTKWG--ATRPMLERS  201 (440)
Q Consensus       141 D~~~~~lY~~--------~~I~~~~~d---g~~~~~~~~~~-~-----~~P~~iavd~~~g~lywtd~~--~~~~~I~r~  201 (440)
                      -+.++.+|++        ..|.+.+.+   |...++++... +     ....++++.|...+|.++...  .....|...
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            3678888887        357888876   65556664421 1     135678999976777665432  211369999


Q ss_pred             eCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCC-------------CcEEEEEccCCC--cEEEecCCcc-Cceee
Q psy14258        202 LLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYL-------------DFIDRINYDGTD--RKTIRKGFPV-QNLYD  265 (440)
Q Consensus       202 ~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~-------------~~i~~~~~dG~~--~~~i~~~~~~-~~p~g  265 (440)
                      ++++........... ...+++..+. +.||++....             ..|+..++.+..  ...+.....- ....+
T Consensus       195 dl~tg~~~~~~~~~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          195 GVADGKPLADELKWV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             ETTTCCEEEEEEEEE-ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             ECCCCCCCCccCCCc-eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            998876543321111 1246778777 8888875432             247777765433  2344442111 12345


Q ss_pred             eeEecC--EEEEEec----CCCeEEEEeccCC--C-ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecC--CccEE
Q psy14258        266 ITVFEN--NLFVTSW----RNQSIIRVNKFNS--D-DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKG--KPAII  334 (440)
Q Consensus       266 l~~~~~--~ly~td~----~~~~i~~~~~~~g--~-~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~--~~~~I  334 (440)
                      +++..|  +|+++..    .+..|+.++..++  + ...+.......... +.+        ..+.+++.++.  .+.+|
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~--------dg~~l~~~s~~~~~~~~l  343 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDG--------VGDQLWFVSGDGAPLKKI  343 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEE--------ETTEEEEEECTTCTTCEE
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-Eec--------cCCEEEEEECCCCCCCEE
Confidence            555543  6666553    2457888887665  3 33333222211111 111        11233444432  24679


Q ss_pred             EEEEcCCCCCCceeeeeecCCCC-ceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCC
Q psy14258        335 KGLTFKRDGTTEQAIMPITDLKR-PSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN  411 (440)
Q Consensus       335 ~~i~~~~~~~~~~~~~~~~~~~~-p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~  411 (440)
                      +.+++++..  ......+..... ..+++++  +++++++-..  ...|+.++++|.....+...+...+.+++++..++
T Consensus       344 ~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          344 VRVDLSGST--PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR  419 (741)
T ss_dssp             EEEECSSSS--CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred             EEEeCCCCc--cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence            889887641  111112222211 2345554  6778887543  44688888877544333222345677888887777


Q ss_pred             cEEEEeCC---CCeEEEEEeCC
Q psy14258        412 NLYWTDAG---IGTINVAKISD  430 (440)
Q Consensus       412 ~lYwtd~~---~~~I~~~~~~g  430 (440)
                      .|+++-..   -.+|..+++.+
T Consensus       420 ~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          420 HAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             CEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEEcCCCCCCEEEEEECCC
Confidence            78766322   25788888766

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.25  Score=46.05  Aligned_cols=254  Identities=8%  Similarity=-0.055  Sum_probs=136.6

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE--ecCccCceEEEEeCC--CCEEEEEeCCCCcEEEEE
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV--THKIVYPYGVTVDFP--TKHVYWVDTYLDFIDRIN  245 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~--~~~~~~P~gl~vD~~--~~~ly~~d~~~~~i~~~~  245 (440)
                      .......+++.|...+|..+...   +.|...++++.....+.  ...-.....+++.+.  +..|+.+. ..+.|...+
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd   85 (379)
T 3jrp_A           10 HNELIHDAVLDYYGKRLATCSSD---KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-YDGKVLIWK   85 (379)
T ss_dssp             CCCCEEEEEECSSSSEEEEEETT---SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSCEEEEE
T ss_pred             CcccEEEEEEcCCCCEEEEEECC---CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec-cCCEEEEEE
Confidence            34567889999865555555443   46777777643332222  122334567888655  55555554 456788777


Q ss_pred             ccCCCcEEEec-CCccCceeeeeEec---CEEEEEecCCCeEEEEeccCCCceE--EEecCC-CCeEEEEeccCCC-CCC
Q psy14258        246 YDGTDRKTIRK-GFPVQNLYDITVFE---NNLFVTSWRNQSIIRVNKFNSDDYE--TIANFS-RPFAIHIYHRQKQ-PDA  317 (440)
Q Consensus       246 ~dG~~~~~i~~-~~~~~~p~gl~~~~---~~ly~td~~~~~i~~~~~~~g~~~~--~~~~~~-~p~~~~v~~~~~q-p~~  317 (440)
                      +.......+.. .........+++..   +.++++-...+.|...+..++....  .+.... ....+.+. +... +..
T Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~  164 (379)
T 3jrp_A           86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA-PATIEEDG  164 (379)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC-CCC-----
T ss_pred             cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc-Cccccccc
Confidence            76654222222 11133456777764   3344444457777777766553322  222222 22333332 2110 000


Q ss_pred             C---CCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCC--CEEEEEECCCCeEEEEecCCCC--
Q psy14258        318 L---KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKE--EYIYYAELTSYVIERRKMFGRG--  389 (440)
Q Consensus       318 ~---~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~--~~vy~~d~~~~~I~r~~~~g~~--  389 (440)
                      .   .+++.++++-+..+.|+..++............+.. -....+++|.+.+  +.++.+-...+.|...++....  
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~  244 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  244 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence            0   112233333333477888887654111112222222 2346689999984  4455555577888888887542  


Q ss_pred             -eEEEEEC--CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        390 -KEVVIDT--GIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       390 -~~~~~~~--~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                       ...+...  .-..+..+++.+.+..|+.+.. .+.|.+.+++
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~  286 (379)
T 3jrp_A          245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN  286 (379)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred             ceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence             2222221  2345788999988887776654 6789888876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.91  E-value=0.26  Score=45.70  Aligned_cols=142  Identities=10%  Similarity=0.028  Sum_probs=85.3

Q ss_pred             ccce-eeeecCCcEEEe--c------eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC------------
Q psy14258        135 DGTE-RFPMVTHKIVYP--E------AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA------------  193 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~--~------~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~------------  193 (440)
                      .+.. ++.+.++.|+++  .      .|.+.++++...+.+.... . ..+++..|...+|+++....            
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            4555 777778878877  1      3888898887666555433 2 78899998777788875320            


Q ss_pred             ------------CCCcEEEEeCCCCCc-eeEEecCccCceEEEEeCCCCEEEEEeCC--------CCcEEEEEccCCCcE
Q psy14258        194 ------------TRPMLERSLLDGTER-FPMVTHKIVYPYGVTVDFPTKHVYWVDTY--------LDFIDRINYDGTDRK  252 (440)
Q Consensus       194 ------------~~~~I~r~~~dG~~~-~~l~~~~~~~P~gl~vD~~~~~ly~~d~~--------~~~i~~~~~dG~~~~  252 (440)
                                  ...+|++.++++... +.+.. .  ....+++.+.+ .+|.+...        ...|+.++ .| ..+
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~-~~~  211 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DG-KEE  211 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TT-EEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC-CC-ceE
Confidence                        014788899987655 44433 2  56778888666 55555432        23677777 33 333


Q ss_pred             EEecCCccCceeeeeEecCEEEEEecC-------CCeEEEEe
Q psy14258        253 TIRKGFPVQNLYDITVFENNLFVTSWR-------NQSIIRVN  287 (440)
Q Consensus       253 ~i~~~~~~~~p~gl~~~~~~ly~td~~-------~~~i~~~~  287 (440)
                      .+..+   .....++-++..|++....       ...|+.++
T Consensus       212 ~l~~~---~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          212 KMFEK---VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEEE---ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             EeccC---cceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            33332   1112234455667665432       35677777

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.24  Score=44.87  Aligned_cols=236  Identities=8%  Similarity=-0.054  Sum_probs=136.0

Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD  247 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d  247 (440)
                      ........++++ |..++|+.....   +.|...+++...........-.....+++.+.+..|+.+. ..+.|...++.
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~   89 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRD---GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG-KDTMINGVPLF   89 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETT---SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE-TTSCEEEEETT
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcC---CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec-CCCeEEEEEee
Confidence            334456788888 655566655544   5788888866554444444455678899998777777665 45677777764


Q ss_pred             CCC----cEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCce
Q psy14258        248 GTD----RKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPST  322 (440)
Q Consensus       248 G~~----~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~  322 (440)
                      ...    ...+ .+ .......+++.++.++... .++.|...+  .++....+.... ....+....+.        ..
T Consensus        90 ~~~~~~~~~~~-~~-~~~~i~~~~~~~~~l~~~~-~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~--------~~  156 (313)
T 3odt_A           90 ATSGEDPLYTL-IG-HQGNVCSLSFQDGVVISGS-WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS--------EN  156 (313)
T ss_dssp             CCTTSCC-CEE-CC-CSSCEEEEEEETTEEEEEE-TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT--------TT
T ss_pred             ecCCCCcccch-hh-cccCEEEEEecCCEEEEEe-CCCCEEEEc--CCcEEEecccCCCceeEEEEccCC--------CC
Confidence            321    2222 21 1334567777666655554 467777666  333333333322 33445444211        12


Q ss_pred             eEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCee
Q psy14258        323 FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVE  402 (440)
Q Consensus       323 ~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~  402 (440)
                      +|+.+ +..+.|+..+....    ........-.....+++.+.+.  +++-...+.|+..++............-..+.
T Consensus       157 ~l~~~-~~d~~i~i~d~~~~----~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  229 (313)
T 3odt_A          157 KFLTA-SADKTIKLWQNDKV----IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY  229 (313)
T ss_dssp             EEEEE-ETTSCEEEEETTEE----EEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEEE-ECCCCEEEEecCce----EEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence            33333 33467777762221    1111211233566899988655  45556788999999875444334444556788


Q ss_pred             eEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        403 GMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       403 glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .|++.+.+ .|+ +-...+.|.+.++..
T Consensus       230 ~~~~~~~~-~l~-~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          230 CIKLLPNG-DIV-SCGEDRTVRIWSKEN  255 (313)
T ss_dssp             EEEECTTS-CEE-EEETTSEEEEECTTT
T ss_pred             EEEEecCC-CEE-EEecCCEEEEEECCC
Confidence            99998765 444 444567899888765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.89  E-value=0.27  Score=45.48  Aligned_cols=284  Identities=8%  Similarity=-0.033  Sum_probs=153.6

Q ss_pred             cce-eeeecCCcEEEe-------ceEEEEecCCceEEEEEc-CCCCCceEEEEcCCC---CeEEEEEcCCCCCcEEEEeC
Q psy14258        136 GTE-RFPMVTHKIVYP-------EAIYFCTHYMEHCMIAID-LNLSKPRGIALDPTS---GYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       136 p~~-avD~~~~~lY~~-------~~I~~~~~dg~~~~~~~~-~~~~~P~~iavd~~~---g~lywtd~~~~~~~I~r~~~  203 (440)
                      +.. ++.+.+..+..+       +.|.+.++++.....+.. ........+++.|..   .+|+.....   +.|...++
T Consensus        21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~   97 (357)
T 3i2n_A           21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG---GNLHIWNL   97 (357)
T ss_dssp             EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT---SCEEEECT
T ss_pred             eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC---CeEEEEeC
Confidence            344 555444444444       257777777654432222 234567899999963   444444433   57888888


Q ss_pred             CCCC-ceeEEecCccCceEEE------EeCCCCEEEEEeCCCCcEEEEEccCCC--cEEEecCC--ccCceeeee----E
Q psy14258        204 DGTE-RFPMVTHKIVYPYGVT------VDFPTKHVYWVDTYLDFIDRINYDGTD--RKTIRKGF--PVQNLYDIT----V  268 (440)
Q Consensus       204 dG~~-~~~l~~~~~~~P~gl~------vD~~~~~ly~~d~~~~~i~~~~~dG~~--~~~i~~~~--~~~~p~gl~----~  268 (440)
                      +... ....+...-.....+.      +.+.+..|+.+. ..+.|...++....  ...+....  .......++    +
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A           98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS-RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY  176 (357)
T ss_dssp             TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE-TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred             CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEe-CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence            7654 2223322223344553      344455555554 56678888876543  33332211  011334444    2


Q ss_pred             e-cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCce
Q psy14258        269 F-ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQ  347 (440)
Q Consensus       269 ~-~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~  347 (440)
                      . .+.++++-...+.|...+..+++.............+.+. |...     ...+|+.+ +..+.|+..++........
T Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~-~~~~-----~~~~l~~~-~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          177 NQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFD-RKDI-----SMNKLVAT-SLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             C-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEES-CSSS-----SCCEEEEE-ESTTEEEEEEEEEEETTTE
T ss_pred             CCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcC-CCCC-----CCCEEEEE-CCCCeEEEEeCcCCCcccc
Confidence            2 2344444455678888887666543332222233444333 1100     12344444 3347888777755411111


Q ss_pred             ee-eee-cCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCe-----------------EE--EEECCCCCeeeEEE
Q psy14258        348 AI-MPI-TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK-----------------EV--VIDTGIYNVEGMAV  406 (440)
Q Consensus       348 ~~-~~~-~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~-----------------~~--~~~~~~~~~~glAv  406 (440)
                      .. ... ........+++.+.+..++++-...+.|+..++.....                 +.  .....-..+..|++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW  329 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence            11 011 22335678999997765677766778888777653211                 11  12234456889999


Q ss_pred             ecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        407 DWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       407 D~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .+.++.|.++-...+.|.+.++..
T Consensus       330 s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          330 SPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEECC
T ss_pred             cCCCCeEEEEecCCCcEEEEECCC
Confidence            998888887766678999998864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.89  E-value=0.27  Score=45.40  Aligned_cols=271  Identities=9%  Similarity=0.003  Sum_probs=149.5

Q ss_pred             cce-eeeecCCcEEEe----ceEEEEecCCce-----EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC
Q psy14258        136 GTE-RFPMVTHKIVYP----EAIYFCTHYMEH-----CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG  205 (440)
Q Consensus       136 p~~-avD~~~~~lY~~----~~I~~~~~dg~~-----~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG  205 (440)
                      +.. ++.+..+++..+    +.|.+-++.+..     ....+.........+++.|...+|+-....   +.|...++..
T Consensus        20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---~~v~~wd~~~   96 (319)
T 3frx_A           20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD---KTLRLWDVAT   96 (319)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTT
T ss_pred             EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC---CEEEEEECCC
Confidence            344 555445456655    556665554321     111222344567889999865555554444   5788888764


Q ss_pred             CCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec-------CEEEEEec
Q psy14258        206 TERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE-------NNLFVTSW  278 (440)
Q Consensus       206 ~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~-------~~ly~td~  278 (440)
                      ......+...-.....+++++.+..|+-+ ...+.|..-++.+.....+...  ......+++..       +.++.+-.
T Consensus        97 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~D~~i~vwd~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~l~s~~  173 (319)
T 3frx_A           97 GETYQRFVGHKSDVMSVDIDKKASMIISG-SRDKTIKVWTIKGQCLATLLGH--NDWVSQVRVVPNEKADDDSVTIISAG  173 (319)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSCEEEEE-ETTSCEEEEETTSCEEEEECCC--SSCEEEEEECCC------CCEEEEEE
T ss_pred             CCeeEEEccCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEecc--CCcEEEEEEccCCCCCCCccEEEEEe
Confidence            43322333333456788898666655544 4566788888877655444322  22234444432       23455555


Q ss_pred             CCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCC
Q psy14258        279 RNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKR  357 (440)
Q Consensus       279 ~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~  357 (440)
                      ..+.|...+..+++....+..-. ....+.+.          |++.++++-+..+.|+..++...    .....+..-..
T Consensus       174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s----------p~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~  239 (319)
T 3frx_A          174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTAS----------PDGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDE  239 (319)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCCSCEEEEEEC----------TTSSEEEEEETTCEEEEEETTTT----EEEEEEECCSC
T ss_pred             CCCEEEEEECCcchhheeecCCCCcEEEEEEc----------CCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCc
Confidence            66777777765544333332222 23334332          34444554444588988888665    33333333345


Q ss_pred             ceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC--------CCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        358 PSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG--------IYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       358 p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~--------~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      ...++|.+.+..+..+.  .+.|...+++...........        -..+..||+.+.++.|+-. ...+.|.+-++.
T Consensus       240 v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg-~~Dg~i~vWd~~  316 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAAT--ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG-YTDNVIRVWQVM  316 (319)
T ss_dssp             EEEEEECSSSSEEEEEE--TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE-ETTSCEEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEc--CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe-ecCceEEEEEEe
Confidence            67999999888776664  345666666642211111111        1235678998877766654 446778887764

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=96.87  E-value=0.00056  Score=50.26  Aligned_cols=38  Identities=37%  Similarity=0.766  Sum_probs=28.8

Q ss_pred             CCCceeecccCCCCCCCC-CCcccCCCceEEc-cCCeeee
Q psy14258          7 NKTQCVDADECLIDGSCD-QTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus         7 ~~~~C~d~~~C~~~~~Cs-~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      +++.|+|++||.....|. +.|.|++++|+|. +.||.+.
T Consensus        37 ~g~~C~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~   76 (82)
T 1emn_A           37 AGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPG   76 (82)
T ss_dssp             ETTEEEECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCC
T ss_pred             CCCccCCcccccCCCCCCCCEeECCCCCEEeECCCCeEeC
Confidence            466788888887555675 4788888888888 8888764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.85  E-value=0.3  Score=45.30  Aligned_cols=263  Identities=4%  Similarity=-0.167  Sum_probs=141.6

Q ss_pred             ceEEEEecCC-ceEEEEEc----CCCCCceEEEEcCCC---CeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEE
Q psy14258        151 EAIYFCTHYM-EHCMIAID----LNLSKPRGIALDPTS---GYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGV  222 (440)
Q Consensus       151 ~~I~~~~~dg-~~~~~~~~----~~~~~P~~iavd~~~---g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl  222 (440)
                      +.|.+.++.. .....+-.    .......+++..|..   |.++.+-...  +.|...+++.......+...-.....+
T Consensus        44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~i~~~  121 (366)
T 3k26_A           44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR--GIIRIINPITMQCIKHYVGHGNAINEL  121 (366)
T ss_dssp             TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT--CEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred             CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC--CEEEEEEchhceEeeeecCCCCcEEEE
Confidence            6788888773 33333321    122457888888852   3444443333  588888887544433344344567889


Q ss_pred             EEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec--CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEec
Q psy14258        223 TVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK--GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIAN  299 (440)
Q Consensus       223 ~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~--~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~  299 (440)
                      ++.+.++.++.+-...+.|...++..........  .........+++..+ ..+++-..++.|...+..+++....+..
T Consensus       122 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          122 KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             EECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence            9987344444444456788888886544433331  111345677777644 3444444567777777655433211110


Q ss_pred             -----------------------------CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCC-----
Q psy14258        300 -----------------------------FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTT-----  345 (440)
Q Consensus       300 -----------------------------~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~-----  345 (440)
                                                   ......+...           ..+| ++-+..+.|+..++......     
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~  269 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-----------GDLI-LSKSCENAIVCWKPGKMEDDIDKIK  269 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-----------TTEE-EEECSSSEEEEEEESSTTCCGGGCC
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-----------CCEE-EEEecCCEEEEEeCCCccccccccc
Confidence                                         0001111111           1233 33334578888887654110     


Q ss_pred             --c---eeeeeecC-CCCceEEEEEcC--CCEEEEEECCCCeEEEEecCCCCe---E-EEEECC--CCCeeeEEEecCCC
Q psy14258        346 --E---QAIMPITD-LKRPSVIDYHEK--EEYIYYAELTSYVIERRKMFGRGK---E-VVIDTG--IYNVEGMAVDWMAN  411 (440)
Q Consensus       346 --~---~~~~~~~~-~~~p~~l~~d~~--~~~vy~~d~~~~~I~r~~~~g~~~---~-~~~~~~--~~~~~glAvD~~~~  411 (440)
                        .   .....+.. -.....+++.+.  +..|+. -...+.|+..++.....   . ......  -..+..|++.+.++
T Consensus       270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  348 (366)
T 3k26_A          270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL-GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS  348 (366)
T ss_dssp             TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE-ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             cCCcchheeccccccCCcEEEEEEcCCCCCcEEEE-EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC
Confidence              0   11111111 123457788887  665544 45678899998876421   1 122222  36789999998666


Q ss_pred             cEEEEeCCCCeEEEEEeC
Q psy14258        412 NLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       412 ~lYwtd~~~~~I~~~~~~  429 (440)
                      .|..+ ...+.|.+.++.
T Consensus       349 ~l~s~-~~dg~i~iwd~~  365 (366)
T 3k26_A          349 ILIAV-CDDASIWRWDRL  365 (366)
T ss_dssp             EEEEE-ETTSEEEEEEC-
T ss_pred             eEEEE-eCCCEEEEEEec
Confidence            55544 446788887763

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.84  E-value=0.61  Score=48.77  Aligned_cols=277  Identities=8%  Similarity=-0.024  Sum_probs=137.1

Q ss_pred             eeeecCCcEEEe------------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC
Q psy14258        139 RFPMVTHKIVYP------------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT  206 (440)
Q Consensus       139 avD~~~~~lY~~------------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~  206 (440)
                      ++.+.++.|.++            +.+.+.++.+...+.+. .........+..|...+|.++..    ..|+..++++.
T Consensus        68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~-~~~~~~~~~~~SPdG~~la~~~~----~~i~~~~~~~~  142 (740)
T 4a5s_A           68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE-RIPNNTQWVTWSPVGHKLAYVWN----NDIYVKIEPNL  142 (740)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCTTEEEEEECSSTTCEEEEET----TEEEEESSTTS
T ss_pred             EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc-cCCCcceeeEECCCCCEEEEEEC----CeEEEEECCCC
Confidence            566777777766            24567888877655432 22345678888887667777642    37888887765


Q ss_pred             CceeEEecC------------------ccCceEEEEeCCCCEEEEEe--CCCC---------------------------
Q psy14258        207 ERFPMVTHK------------------IVYPYGVTVDFPTKHVYWVD--TYLD---------------------------  239 (440)
Q Consensus       207 ~~~~l~~~~------------------~~~P~gl~vD~~~~~ly~~d--~~~~---------------------------  239 (440)
                      ..+.+...+                  +....+++..|.+.+|.++.  ...-                           
T Consensus       143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            544332211                  11223577888888777652  1100                           


Q ss_pred             ------cEEEEEccC---C---CcEEEecCC----ccCceeeeeEecC---EEEEEecC--CCeEEEEeccCCCc-----
Q psy14258        240 ------FIDRINYDG---T---DRKTIRKGF----PVQNLYDITVFEN---NLFVTSWR--NQSIIRVNKFNSDD-----  293 (440)
Q Consensus       240 ------~i~~~~~dG---~---~~~~i~~~~----~~~~p~gl~~~~~---~ly~td~~--~~~i~~~~~~~g~~-----  293 (440)
                            .|...++++   +   ....+....    .-.....++...|   .+++....  ...|+.++..+|+.     
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence                  344455554   3   222222100    0111233344322   23344332  22566777666651     


Q ss_pred             --eEEEecCCCCeEEEEeccCCCCCCCCCc--eeEEeec--CCccEEEEEEcCCCCCCceeeeeec-CCCCceE-EEEEc
Q psy14258        294 --YETIANFSRPFAIHIYHRQKQPDALKPS--TFLLYAK--GKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSV-IDYHE  365 (440)
Q Consensus       294 --~~~~~~~~~p~~~~v~~~~~qp~~~~~~--~~l~~~~--~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~-l~~d~  365 (440)
                        ..++..... .-+.+. ....|.- .|+  .++++..  .+...|+.+++++. ..    ..+. +--.... +.+| 
T Consensus       303 ~~~~l~~~~~~-~~v~~~-~~~~p~f-spDG~~l~~~~s~~~G~~~l~~~~~~~~-~~----~~lT~g~~~v~~~~~~d-  373 (740)
T 4a5s_A          303 VARQHIEMSTT-GWVGRF-RPSEPHF-TLDGNSFYKIISNEEGYRHICYFQIDKK-DC----TFITKGTWEVIGIEALT-  373 (740)
T ss_dssp             GGGCEEEECSS-SCSSSS-SCCCCEE-CTTSSEEEEEEECTTSCEEEEEEETTCS-SC----EESCCSSSCEEEEEEEC-
T ss_pred             EEEEeeeccCC-ceEccC-cCCCceE-cCCCCEEEEEEEcCCCceEEEEEECCCC-ce----EecccCCEEEEEEEEEe-
Confidence              111111000 000000 0001100 133  3332442  22467888888766 21    1121 1112222 3355 


Q ss_pred             CCCEEEEEECC------CCeEEEEecCCCCeEEEEECCC----CCeeeEEEecCCCcEEEEeCC--CCeEEEEEeCC
Q psy14258        366 KEEYIYYAELT------SYVIERRKMFGRGKEVVIDTGI----YNVEGMAVDWMANNLYWTDAG--IGTINVAKISD  430 (440)
Q Consensus       366 ~~~~vy~~d~~------~~~I~r~~~~g~~~~~~~~~~~----~~~~glAvD~~~~~lYwtd~~--~~~I~~~~~~g  430 (440)
                       ++.||++...      ...|++++++|......+...+    ......++.+.++.+..+-.+  -..+.+.++++
T Consensus       374 -~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~  449 (740)
T 4a5s_A          374 -SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN  449 (740)
T ss_dssp             -SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred             -CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence             7899998764      3589999999865443343332    345667777766654444322  34677777664

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.72  E-value=0.42  Score=45.32  Aligned_cols=277  Identities=6%  Similarity=-0.044  Sum_probs=149.5

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|.+.++.|.-+ ...+.|+..++....  ..        ..+......... ++.+.++.|..+   +.|.+.+
T Consensus        68 ~V~~~~~sp~~~~l~s~-s~D~~v~iWd~~~~~--~~--------~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           68 KVYSLDWTPEKNWIVSA-SQDGRLIVWNALTSQ--KT--------HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             CEEEEEECTTSSCEEEE-ETTSEEEEEETTTTE--EE--------EEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             EEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc--cc--------eEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            48999999876655444 444666555443221  10        112223334566 777766655444   5666666


Q ss_pred             cCCceE-------EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-----CccCceEEEEe
Q psy14258        158 HYMEHC-------MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH-----KIVYPYGVTVD  225 (440)
Q Consensus       158 ~dg~~~-------~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-----~~~~P~gl~vD  225 (440)
                      +.....       ...+.........++..|..+..+.+-...  +.|...++........+..     .......+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D--~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD--QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT--SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC--CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            543210       001111223345556666544444443332  4777777765444333311     12235567776


Q ss_pred             CCCCEEEEEeCCCCcEEEEEcc-C-CCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCC
Q psy14258        226 FPTKHVYWVDTYLDFIDRINYD-G-TDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSR  302 (440)
Q Consensus       226 ~~~~~ly~~d~~~~~i~~~~~d-G-~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~  302 (440)
                      +.++.++.+-...+.|..-++. + .....+...  -.....+++..+ ..+.+-...+.|...+..+++...++.....
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~  292 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD  292 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence            6566777766677788888875 2 333333221  234567787755 5666767788888888877766554432110


Q ss_pred             --------CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee-----cCCCCceEEEEEcCCCE
Q psy14258        303 --------PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI-----TDLKRPSVIDYHEKEEY  369 (440)
Q Consensus       303 --------p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-----~~~~~p~~l~~d~~~~~  369 (440)
                              ...+.+.          |++.++++-...+.|+..++...    +....+     ..-.....++|.+.+..
T Consensus       293 ~~~~~~~~v~~~~~s----------~~g~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~h~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          293 RNDNELPIVTSVAFS----------ISGRLLFAGYSNGDCYVWDTLLA----EMVLNLGTLQNSHEGRISCLGLSSDGSA  358 (380)
T ss_dssp             SSCCSSCSCSEEEEC----------SSSSEEEEECTTSCEEEEETTTC----CEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred             ccccccCceEEEEEC----------CCCCEEEEEECCCCEEEEECCCC----ceEEEEecccCCCCCceEEEEECCCCCE
Confidence                    1222222          34344444444578888886544    122222     12234568999997775


Q ss_pred             EEEEECCCCeEEEEecCCC
Q psy14258        370 IYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       370 vy~~d~~~~~I~r~~~~g~  388 (440)
                      | ++-...++|..-++.+.
T Consensus       359 l-~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          359 L-CTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             E-EEECTTSCEEEEECCSS
T ss_pred             E-EEeeCCCCEEEEecCCC
Confidence            4 55556788877777653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.69  E-value=0.014  Score=58.41  Aligned_cols=108  Identities=8%  Similarity=0.008  Sum_probs=75.6

Q ss_pred             ccccccce-eeeecCCcEEEe-------------------------ceEEEEecCCce-------EEE-EEc--------
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP-------------------------EAIYFCTHYMEH-------CMI-AID--------  168 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~-------------------------~~I~~~~~dg~~-------~~~-~~~--------  168 (440)
                      ..+..|++ ++++.++.||++                         +.|.+...++..       -.. ++.        
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            44678999 999999999998                         137777665421       122 221        


Q ss_pred             ------------CCCCCceEEEEcCCCCeEEE-EEcCCC---------CCcEEEEeCCCCCceeEEecC-ccCceEEEEe
Q psy14258        169 ------------LNLSKPRGIALDPTSGYMFF-TKWGAT---------RPMLERSLLDGTERFPMVTHK-IVYPYGVTVD  225 (440)
Q Consensus       169 ------------~~~~~P~~iavd~~~g~lyw-td~~~~---------~~~I~r~~~dG~~~~~l~~~~-~~~P~gl~vD  225 (440)
                                  ..+..|.+|++|+ .|.||+ ||....         ...+++.+.+....+.++... ...|+|+++.
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafS  539 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS  539 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred             ccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEEC
Confidence                        1267899999999 699999 775310         137899988644444455433 4579999999


Q ss_pred             CCCCEEEEEeCCCC
Q psy14258        226 FPTKHVYWVDTYLD  239 (440)
Q Consensus       226 ~~~~~ly~~d~~~~  239 (440)
                      +.+..||++-.+-+
T Consensus       540 PD~ktLfV~vQHPG  553 (592)
T 4a9v_A          540 PDQKTLFVGIQHPG  553 (592)
T ss_dssp             TTSSEEEEEEESTT
T ss_pred             CCCCEEEEEEeCCC
Confidence            99999999865433

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.69  E-value=0.016  Score=58.10  Aligned_cols=108  Identities=16%  Similarity=0.151  Sum_probs=75.7

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCC-------------------CCcEEEEeCCCCCc-------eeEEe----------
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGAT-------------------RPMLERSLLDGTER-------FPMVT----------  213 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~-------------------~~~I~r~~~dG~~~-------~~l~~----------  213 (440)
                      .+..|++|+++|.+|.||++-.+..                   .+.|+|...++...       ..++.          
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            5678999999999999999954321                   26799998866431       11221          


Q ss_pred             -----------cCccCceEEEEeCCCCEEEE-EeCC-----------CCcEEEEEccCCCcEEEecCCccCceeeeeEec
Q psy14258        214 -----------HKIVYPYGVTVDFPTKHVYW-VDTY-----------LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE  270 (440)
Q Consensus       214 -----------~~~~~P~gl~vD~~~~~ly~-~d~~-----------~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~  270 (440)
                                 ..+..|++|++| ..+.||+ +|..           .+.+++++.+...++.++.......|.|+++..
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd-~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP  540 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP  540 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred             cccCccCccccCccCCCCceEEC-CCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC
Confidence                       026789999999 5689999 7753           237888887655666665533356789999876


Q ss_pred             C--EEEEEec
Q psy14258        271 N--NLFVTSW  278 (440)
Q Consensus       271 ~--~ly~td~  278 (440)
                      |  .||++-.
T Consensus       541 D~ktLfV~vQ  550 (592)
T 4a9v_A          541 DQKTLFVGIQ  550 (592)
T ss_dssp             TSSEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            5  8888754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.68  E-value=0.46  Score=45.92  Aligned_cols=202  Identities=7%  Similarity=0.024  Sum_probs=112.2

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec--CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH--KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT  249 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~--~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~  249 (440)
                      ....+|+..|.++.+..+-...  +.|...+++......+...  .-....+|++.+.++.++++-...+.|..-++.+.
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~d--g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKG--GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETT--SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred             CCEEEEEEeCCCCCEEEEEeCC--CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence            3467899998766655543332  5788888876555444432  13346789998766555555566778888888877


Q ss_pred             CcEEEecCCcc-CceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCc-eeEE
Q psy14258        250 DRKTIRKGFPV-QNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPS-TFLL  325 (440)
Q Consensus       250 ~~~~i~~~~~~-~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~  325 (440)
                      ....+...... .....+++..+ .++++-...+.|...+.. ++....+..-. ....+.+.          |. ..++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~----------p~~~~~~  266 (435)
T 4e54_B          198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALN----------PCCDWFL  266 (435)
T ss_dssp             EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEEC----------TTCSSEE
T ss_pred             ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeec----------CCCceEE
Confidence            66665543211 22345666654 455555557777777753 43332222211 22334332          22 3344


Q ss_pred             eecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        326 YAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       326 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      ++-+..+.|+..++...............-....+++|++.+.+|.-+ ...+.|+..++..
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~-~~D~~i~iwd~~~  327 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT-DQKSEIRVYSASQ  327 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE-ESSSCEEEEESSS
T ss_pred             EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE-cCCCEEEEEECCC
Confidence            443344677777775541111111111112234578888877766544 4577787777654

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=96.65  E-value=0.00039  Score=51.80  Aligned_cols=42  Identities=36%  Similarity=0.646  Sum_probs=35.0

Q ss_pred             ceec-CCCCceeecccCCCCCCCCCCcccCCCceEEc-c--CCeeee
Q psy14258          2 TFRG-PNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-D--EGFSFQ   44 (440)
Q Consensus         2 ~~~~-~~~~~C~d~~~C~~~~~Cs~~C~n~~~~~~C~-~--~g~~l~   44 (440)
                      ||.+ ++++.|+|++||.. +.|.+.|.|++++|.|. +  +||.+.
T Consensus        32 G~~~~~~g~~C~dideC~~-~~C~~~C~n~~g~y~C~C~g~~G~~~~   77 (87)
T 1z6c_A           32 GYRYNLKSKSCEDIDECSE-NMCAQLCVNYPGGYTCYCDGKKGFKLA   77 (87)
T ss_dssp             TCEEETTTTEEECCCHHHH-SCCSSEECCCSSSCCEECCSSSCCBCC
T ss_pred             CceECCCCCcCCCcCeeCC-CCCCCEEEccCCCEEEECCCCcCCccc
Confidence            5665 67889999999975 67999999999999999 7  577654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.61  E-value=0.92  Score=47.80  Aligned_cols=334  Identities=7%  Similarity=-0.076  Sum_probs=175.3

Q ss_pred             eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-e
Q psy14258         62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-R  139 (440)
Q Consensus        62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-a  139 (440)
                      |.+++....... .........+.++..|.. +.||+.... +.|++.+........+......+.. +  .-..+.. +
T Consensus       195 l~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~-g~lwigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~-l--~~~~i~~i~  269 (795)
T 4a2l_A          195 LYTYSITQKTFEKVIPILGTKQIQAILQQSP-TRIWVATEG-AGLFLINPKTKEIKNYLHSPSNPKS-I--SSNYIRSLA  269 (795)
T ss_dssp             EEEEETTTCCEEECC----CCCEEEEEEEET-TEEEEEEBS-SCEEEEETTTTEEEEECCCTTCTTS-C--SCSBEEEEE
T ss_pred             EEEEeCCCCeEEEecCCCCCCeeEEEEEcCC-CCEEEEECC-CCeEEEeCCCCeEEEeecCCCCccc-c--CCCeEEEEE
Confidence            777776544433 111111123778888764 667766544 3466665443222211000000000 0  1123555 6


Q ss_pred             eeecCCcEEEe--ceEEEEecCCceEEEEEcC-----C--CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCcee
Q psy14258        140 FPMVTHKIVYP--EAIYFCTHYMEHCMIAIDL-----N--LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP  210 (440)
Q Consensus       140 vD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~-----~--~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~  210 (440)
                      .|. .++|++.  +.+.+.+........+...     .  .....+|..|+ .|.|++...+   ..|.+.+......+.
T Consensus       270 ~d~-~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lWigt~~---~Gl~~~~~~~~~~~~  344 (795)
T 4a2l_A          270 MDS-QNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMWLGTYF---GGLNYYHPIRNRFKN  344 (795)
T ss_dssp             ECT-TSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEEEEESS---SCEEEECGGGGSSEE
T ss_pred             EcC-CCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEEEEECC---CCeEEeCCCcccceE
Confidence            664 3446665  5677777776554444221     1  24578999998 6888887765   368887765443332


Q ss_pred             EEec----C--ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCC-------ccCceeeeeEecC-E-EEE
Q psy14258        211 MVTH----K--IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGF-------PVQNLYDITVFEN-N-LFV  275 (440)
Q Consensus       211 l~~~----~--~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~-------~~~~p~gl~~~~~-~-ly~  275 (440)
                      +...    .  -.....|..| ..++|++... .+-|.+++......+......       ......++..+.+ . ||+
T Consensus       345 ~~~~~~~~~l~~~~V~~i~~d-~~g~lWiGt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi  422 (795)
T 4a2l_A          345 IRNIPYKNSLSDNVVSCIVED-KDKNLWIGTN-DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI  422 (795)
T ss_dssp             ECCCTTSSSCSCSSEEEEEEC-TTSCEEEEES-SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE
T ss_pred             EcCCCCCCCCCCCeeEEEEEC-CCCCEEEEEC-CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE
Confidence            2211    1  1235678888 5677777643 345777776654444332210       1134567777644 6 666


Q ss_pred             EecCCCeEEEEeccCCCceEEEecC---C--CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeee
Q psy14258        276 TSWRNQSIIRVNKFNSDDYETIANF---S--RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIM  350 (440)
Q Consensus       276 td~~~~~i~~~~~~~g~~~~~~~~~---~--~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~  350 (440)
                      ... .+.|.++++.+++........   .  ....+...          +++.|+++..  ..+.+++.+.. ...  ..
T Consensus       423 gt~-~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d----------~~g~lwigt~--~Gl~~~~~~~~-~~~--~~  486 (795)
T 4a2l_A          423 GTH-AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPD----------GEGNLWLGTL--SALVRFNPEQR-SFT--TI  486 (795)
T ss_dssp             EET-TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEEC----------SSSCEEEEES--SCEEEEETTTT-EEE--EC
T ss_pred             EeC-cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEEC----------CCCCEEEEec--CceeEEeCCCC-eEE--Ec
Confidence            543 467889988766533322111   0  11222211          2456777665  56777776543 110  01


Q ss_pred             eec----CC--CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE----CCC--CCeeeEEEecCCCcEEEEeC
Q psy14258        351 PIT----DL--KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID----TGI--YNVEGMAVDWMANNLYWTDA  418 (440)
Q Consensus       351 ~~~----~~--~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~----~~~--~~~~glAvD~~~~~lYwtd~  418 (440)
                      ...    .+  ....++..|.. +.++++..  +-+++.+.++... .+..    .++  ..+..|+.|. .++||++..
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~-g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigT~  561 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSH-KRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEAS-NGIIWVGTR  561 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTT-CCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECT-TSCEEEEES
T ss_pred             cccccccccCCceEEEEEECCC-CCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECC-CCCEEEEeC
Confidence            100    11  24567888865 55877764  6688988875432 2211    111  3567889985 566887765


Q ss_pred             CCCeEEEEEeCC
Q psy14258        419 GIGTINVAKISD  430 (440)
Q Consensus       419 ~~~~I~~~~~~g  430 (440)
                      +  .|.+++...
T Consensus       562 ~--Gl~~~d~~~  571 (795)
T 4a2l_A          562 E--GFYCFNEKD  571 (795)
T ss_dssp             S--CEEEEETTT
T ss_pred             C--CceeECCCC
Confidence            3  577777655

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=96.58  E-value=0.00048  Score=54.60  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             ceecCCCCceeecccCCCCCCCCCCcccCCCceEEc-cCCeeee
Q psy14258          2 TFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus         2 ~~~~~~~~~C~d~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      ||.+..++.|+|++||...+.|.+.|.|++++|.|. +.||.+.
T Consensus        68 Gy~~~~g~~C~dideC~~~~~C~~~C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           68 GYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             TEEEETTTEEEECCHHHHCSSCSSEEEECSSSEEEEECSSSSCE
T ss_pred             CccCCCCCccccccccCCCCCCcCeEEeCCCCEEEECCCCCccC
Confidence            566533789999999997678989999999999999 9999864

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.54  E-value=0.93  Score=47.00  Aligned_cols=244  Identities=10%  Similarity=0.065  Sum_probs=133.5

Q ss_pred             ccce-eeeecCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC----------CC
Q psy14258        135 DGTE-RFPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA----------TR  195 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~----------~~  195 (440)
                      ...+ ++.+.++.|-++        ..|.+.++++............ -.+++.. ....||++....          ..
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k-~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~  207 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVK-FSGISWL-GNEGFFYSSYDKPDGSELSARTDQ  207 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEE-SCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCce-eccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence            3455 777778777666        3588889887554322111110 1122332 235566664331          12


Q ss_pred             CcEEEEeCCCCCc--eeEEecCc---cCceEEEEeCCCCEEEEEeCC---CCcEEEEEccCC--CcEEEecCCccCceee
Q psy14258        196 PMLERSLLDGTER--FPMVTHKI---VYPYGVTVDFPTKHVYWVDTY---LDFIDRINYDGT--DRKTIRKGFPVQNLYD  265 (440)
Q Consensus       196 ~~I~r~~~dG~~~--~~l~~~~~---~~P~gl~vD~~~~~ly~~d~~---~~~i~~~~~dG~--~~~~i~~~~~~~~p~g  265 (440)
                      .+|++.++.....  +.+.....   .+-.++.+.+.+..|+++...   .+.|+.+++++.  ..+.+.... -.....
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-~~~~~~  286 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-DADVSL  286 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-SSCEEE
T ss_pred             cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-CceEEE
Confidence            5699988865432  23333222   123577888888888776532   248888988655  345554421 112222


Q ss_pred             eeEecCEEEEEecC---CCeEEEEeccCCCc---eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCC--ccEEEEE
Q psy14258        266 ITVFENNLFVTSWR---NQSIIRVNKFNSDD---YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK--PAIIKGL  337 (440)
Q Consensus       266 l~~~~~~ly~td~~---~~~i~~~~~~~g~~---~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~--~~~I~~i  337 (440)
                      +.-+++.||+....   +.+|++++..++..   ..++.......++..+           +.+|++....  ..+|+.+
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~-----------g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSG-----------SGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEE-----------TTEEEEEEEETTEEEEEEE
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEE-----------CCEEEEEEEECCeeEEEEE
Confidence            55677888876543   46899998876654   3333322222222222           2455554332  2467888


Q ss_pred             EcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC---CCCeEEEEecCCCCeEEEEE
Q psy14258        338 TFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL---TSYVIERRKMFGRGKEVVID  395 (440)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~---~~~~I~r~~~~g~~~~~~~~  395 (440)
                      ++++. .  ...+++.......++++++.++.++++-.   .-.+|++.++.+...+++..
T Consensus       356 d~~g~-~--~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~  413 (693)
T 3iuj_A          356 DYEGK-R--VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA  413 (693)
T ss_dssp             CTTSC-E--EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred             ECCCC-e--eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence            87755 1  12233333333345666677787877643   24789999998765555543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.54  E-value=0.63  Score=44.97  Aligned_cols=285  Identities=7%  Similarity=-0.044  Sum_probs=149.8

Q ss_pred             eEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccceeee
Q psy14258         62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP  141 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~avD  141 (440)
                      |+..++........+..+...+.+++++  .+ +.++-...+.|+..++....  .+        ..+...-.... ++.
T Consensus       141 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~--~~--------~~~~~h~~~v~-~~~  206 (445)
T 2ovr_B          141 LKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGE--CI--------HTLYGHTSTVR-CMH  206 (445)
T ss_dssp             EEEEETTTCCEEEECCCCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTE--EE--------EEECCCSSCEE-EEE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCc--EE--------EEECCCCCcEE-EEE
Confidence            7777776444332222222238888887  34 44555555777666654321  11        01111111222 555


Q ss_pred             ecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccC
Q psy14258        142 MVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVY  218 (440)
Q Consensus       142 ~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~  218 (440)
                      +.++.|+.+   +.|.+.++........+.........++.|.  ..|+.....   +.|...++........+......
T Consensus       207 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~  281 (445)
T 2ovr_B          207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYD---FMVKVWDPETETCLHTLQGHTNR  281 (445)
T ss_dssp             EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS--SCEEEEETT---SCEEEEEGGGTEEEEEECCCSSC
T ss_pred             ecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECC--CEEEEEcCC---CEEEEEECCCCcEeEEecCCCCc
Confidence            556655544   7888888876554444444456677888743  445554443   57777777543322222222234


Q ss_pred             ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEe
Q psy14258        219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA  298 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~  298 (440)
                      ...+++  .+..|+.+. ..+.|...++..........+. ......++..++.++... .++.|...+..+++....+.
T Consensus       282 v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  356 (445)
T 2ovr_B          282 VYSLQF--DGIHVVSGS-LDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGN-ADSTVKIWDIKTGQCLQTLQ  356 (445)
T ss_dssp             EEEEEE--CSSEEEEEE-TTSCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEEEE-TTSCEEEEETTTCCEEEEEC
T ss_pred             eEEEEE--CCCEEEEEe-CCCeEEEEECCCCCEEEEEcCC-cccEEEEEEeCCEEEEEe-CCCeEEEEECCCCcEEEEEc
Confidence            456666  355665554 5678888887544433323321 334567777776555544 57788888877776655554


Q ss_pred             cCC----CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee------cCCCCceEEEEEcCCC
Q psy14258        299 NFS----RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI------TDLKRPSVIDYHEKEE  368 (440)
Q Consensus       299 ~~~----~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~------~~~~~p~~l~~d~~~~  368 (440)
                      ...    ....+...           ..+|+.+ +..+.|+..++...    .....+      ..-....++++++.+.
T Consensus       357 ~~~~~~~~v~~~~~~-----------~~~l~s~-~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          357 GPNKHQSAVTCLQFN-----------KNFVITS-SDDGTVKLWDLKTG----EFIRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             STTSCSSCEEEEEEC-----------SSEEEEE-ETTSEEEEEETTTC----CEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             cCCCCCCCEEEEEEC-----------CCEEEEE-eCCCeEEEEECCCC----ceeeeeeccccCCCCceEEEEEecCCEE
Confidence            311    12233221           1334443 33478888887655    122222      1122356888887644


Q ss_pred             EEEEEECCCCe----EEEEecCC
Q psy14258        369 YIYYAELTSYV----IERRKMFG  387 (440)
Q Consensus       369 ~vy~~d~~~~~----I~r~~~~g  387 (440)
                      .+. +-...++    |+..+++.
T Consensus       421 ~la-~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          421 VCA-VGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEE-EECSSSSSCCEEEEEECCC
T ss_pred             EEE-EcccCCCCccEEEEEECCC
Confidence            333 3334443    66666654

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=96.51  E-value=0.00069  Score=50.30  Aligned_cols=44  Identities=27%  Similarity=0.487  Sum_probs=35.6

Q ss_pred             ceec--CCCCceeecccCCC-CCCCC-CCcccCCCceEEc-cCCeeeec
Q psy14258          2 TFRG--PNKTQCVDADECLI-DGSCD-QTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         2 ~~~~--~~~~~C~d~~~C~~-~~~Cs-~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      ||.+  .+++.|+|++||.. +..|. +.|.|++++|+|. +.||.+.+
T Consensus        32 Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~   80 (86)
T 1lmj_A           32 GYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP   80 (86)
T ss_dssp             SEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCS
T ss_pred             CcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCC
Confidence            5663  35789999999985 45676 5899999999999 99998754

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.51  E-value=0.001  Score=43.89  Aligned_cols=27  Identities=22%  Similarity=0.550  Sum_probs=24.3

Q ss_pred             CCCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         19 IDGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        19 ~~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      .++.|+|.|.|++++|.|. +.||.|.+
T Consensus         4 ~ng~C~~~C~n~~gs~~C~C~~Gy~L~~   31 (51)
T 1kig_L            4 DNGGCDQFCREERSEVRCSCAHGYVLGD   31 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECT
T ss_pred             CCCCcCCEeEcCCCCeEEeCCCCcEECC
Confidence            3678999999999999999 99999865

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.50  E-value=0.22  Score=48.28  Aligned_cols=202  Identities=7%  Similarity=-0.111  Sum_probs=116.1

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFC  156 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~  156 (440)
                      ++.+|+|+|....+..+-...+.|...++.......+        +.+...-....+ ++.+.+++++++    +.|.+-
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~--------~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF--------IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE--------ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE--------EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            4999999987776666666667776655543321111        111122334555 666555656666    678888


Q ss_pred             ecCCceEEEEEcCCC--CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEE
Q psy14258        157 THYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV  234 (440)
Q Consensus       157 ~~dg~~~~~~~~~~~--~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~  234 (440)
                      ++.+.....+.....  .....++++|....|......   +.|...+++|.....+. ..-.....+++.+.+..++.+
T Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV---GNVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS---SBEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEE
T ss_pred             eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC---CcEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEE
Confidence            998877766654322  345689999854444443333   68999999876443322 122346788998777777766


Q ss_pred             eCCCCcEEEEEccCC-CcEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceE
Q psy14258        235 DTYLDFIDRINYDGT-DRKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       235 d~~~~~i~~~~~dG~-~~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      -...+.|...++... ....+.. .........+++..+ ....+-...+.|...+..++....
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence            555666766665432 2211111 101122345666543 344444456777777766665544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.54  Score=43.74  Aligned_cols=239  Identities=5%  Similarity=-0.127  Sum_probs=130.0

Q ss_pred             cccccce-eeeecCCcEEEe---ceEEEEecCCceEEE--EEcCCCCCceEEEEcCC--CCeEEEEEcCCCCCcEEEEeC
Q psy14258        132 SLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMI--AIDLNLSKPRGIALDPT--SGYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       132 ~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~--~~~~~~~~P~~iavd~~--~g~lywtd~~~~~~~I~r~~~  203 (440)
                      .-..+.. ++.+.++.|..+   +.|.+.++++...+.  .+........++++.+.  ..+|+.+...   +.|...++
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~v~iwd~   86 (379)
T 3jrp_A           10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD---GKVLIWKE   86 (379)
T ss_dssp             CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---SCEEEEEE
T ss_pred             CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC---CEEEEEEc
Confidence            3344556 777666655544   678888876433222  23334456788998765  4455555544   47777777


Q ss_pred             CCCCceeE--EecCccCceEEEEeCC--CCEEEEEeCCCCcEEEEEccCCC--cEEEecCCccCceeeeeEec-------
Q psy14258        204 DGTERFPM--VTHKIVYPYGVTVDFP--TKHVYWVDTYLDFIDRINYDGTD--RKTIRKGFPVQNLYDITVFE-------  270 (440)
Q Consensus       204 dG~~~~~l--~~~~~~~P~gl~vD~~--~~~ly~~d~~~~~i~~~~~dG~~--~~~i~~~~~~~~p~gl~~~~-------  270 (440)
                      +......+  ..........+++.+.  +..|+.+ ...+.|...++....  ....... .......+++..       
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCTTSCCCEEEEEC-CTTCEEEEEECCCC-----
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe-cCCCcEEEEecCCCCceeeEEecC-CCCceEEEEEcCccccccc
Confidence            65432122  2223345778899876  5555555 456788888876542  2222222 123345666654       


Q ss_pred             -------CEEEEEecCCCeEEEEeccCCCceE-EEecC---C-CCeEEEEeccCCCCCCCCCc---eeEEeecCCccEEE
Q psy14258        271 -------NNLFVTSWRNQSIIRVNKFNSDDYE-TIANF---S-RPFAIHIYHRQKQPDALKPS---TFLLYAKGKPAIIK  335 (440)
Q Consensus       271 -------~~ly~td~~~~~i~~~~~~~g~~~~-~~~~~---~-~p~~~~v~~~~~qp~~~~~~---~~l~~~~~~~~~I~  335 (440)
                             +.++.+-..++.|...+..+++... ....+   . ....+.+.          |+   +.++++-+..+.|+
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s----------p~~~~~~~l~s~~~dg~i~  234 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS----------PTVLLRSYLASVSQDRTCI  234 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC----------CCCSSSEEEEEEETTSCEE
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC----------CCCCCCCeEEEEeCCCEEE
Confidence                   4555555557777777766655432 22211   1 23334333          23   33444444457888


Q ss_pred             EEEcCCCCCCceeee-eec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        336 GLTFKRDGTTEQAIM-PIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       336 ~i~~~~~~~~~~~~~-~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      ..++........... ... .......++|++.+..|+.+.. .+.|+..+++
T Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~  286 (379)
T 3jrp_A          235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN  286 (379)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred             EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence            888776511111111 111 2224568999998887776654 6667666665

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.48  E-value=0.67  Score=44.69  Aligned_cols=260  Identities=8%  Similarity=-0.007  Sum_probs=143.0

Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK  215 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~  215 (440)
                      ++.+.++.|...   +.|.+.++........+........+++.|.  ..|+.....   +.|...+++.......+...
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h  212 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSD---STVRVWDVNTGEMLNTLIHH  212 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--SEEEEEETT---SCEEEEESSSCCEEEEECCC
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECC--CEEEEEcCC---CeEEEEECCCCcEEEEEcCC
Confidence            666655544444   6888888876555444444445667777643  444444433   57888887654333222222


Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcE---EEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK---TIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~---~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~  292 (440)
                      -.....++++  .+.|+.+ ...+.|...++......   ....+ .......+++.++.|+... .++.|...+..+++
T Consensus       213 ~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~  287 (435)
T 1p22_A          213 CEAVLHLRFN--NGMMVTC-SKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDDKYIVSAS-GDRTIKVWNTSTCE  287 (435)
T ss_dssp             CSCEEEEECC--TTEEEEE-ETTSCEEEEECSSSSCCEEEEEECC-CSSCEEEEEEETTEEEEEE-TTSEEEEEETTTCC
T ss_pred             CCcEEEEEEc--CCEEEEe-eCCCcEEEEeCCCCCCceeeeEecC-CCCcEEEEEeCCCEEEEEe-CCCeEEEEECCcCc
Confidence            3334555553  5555554 45678888887654322   22222 1234567777666666655 47788888877776


Q ss_pred             ceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEE
Q psy14258        293 DYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYI  370 (440)
Q Consensus       293 ~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~v  370 (440)
                      ....+..-. ....+...           +.+|+.+ +..+.|+..++...    .....+.+ -....++++|  ++.+
T Consensus       288 ~~~~~~~~~~~v~~~~~~-----------~~~l~~g-~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~--~~~l  349 (435)
T 1p22_A          288 FVRTLNGHKRGIACLQYR-----------DRLVVSG-SSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFD--NKRI  349 (435)
T ss_dssp             EEEEEECCSSCEEEEEEE-----------TTEEEEE-ETTSCEEEEETTTC----CEEEEECCCSSCEEEEECC--SSEE
T ss_pred             EEEEEcCCCCcEEEEEeC-----------CCEEEEE-eCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEec--CCEE
Confidence            655554322 22233221           1233333 33478888887654    22222222 2234577773  4544


Q ss_pred             EEEECCCCeEEEEecCCCC---------eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        371 YYAELTSYVIERRKMFGRG---------KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       371 y~~d~~~~~I~r~~~~g~~---------~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                       ++-...+.|...++....         ........-..+..+++|  +. ...+-...++|.+.++..
T Consensus       350 -~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          350 -VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF-QIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             -EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SS-CEEECCSSSEEEEEC---
T ss_pred             -EEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC--CC-EEEEEeCCCEEEEEECCC
Confidence             455567888888875322         222233344567888885  44 455656678999999876

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.44  E-value=0.73  Score=47.70  Aligned_cols=131  Identities=6%  Similarity=0.004  Sum_probs=77.8

Q ss_pred             EEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeecc-c--cccce-eeeecCCcEEEe----------
Q psy14258         85 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS-L--LDGTE-RFPMVTHKIVYP----------  150 (440)
Q Consensus        85 ~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~-~--~~p~~-avD~~~~~lY~~----------  150 (440)
                      .+.+.+.+ ++.++. ..+.|+..++.+.....+          +... .  ..... ++.+.++.|.++          
T Consensus        20 ~~~~s~dg-~~~~~~-~d~~i~~~~~~~g~~~~~----------~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s   87 (719)
T 1z68_A           20 FPNWISGQ-EYLHQS-ADNNIVLYNIETGQSYTI----------LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYS   87 (719)
T ss_dssp             CCEESSSS-EEEEEC-TTSCEEEEESSSCCEEEE----------ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             ccEECCCC-eEEEEc-CCCCEEEEEcCCCcEEEE----------EccccccccceeeEEECCCCCeEEEEecCceeEEee
Confidence            44566554 333333 356777766655432221          1111 0  12566 788888877776          


Q ss_pred             --ceEEEEecCCceE---EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc---------
Q psy14258        151 --EAIYFCTHYMEHC---MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI---------  216 (440)
Q Consensus       151 --~~I~~~~~dg~~~---~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~---------  216 (440)
                        +.|.+.++++...   +.+    ......++..|...+|.++..    ..|...++++.....+.....         
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~~----~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~  159 (719)
T 1z68_A           88 YTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVYQ----NNIYLKQRPGDPPFQITFNGRENKIFNGIP  159 (719)
T ss_dssp             EEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEEET----TEEEEESSTTSCCEECCCCCBTTTEEESSC
T ss_pred             cceEEEEEECCCCccccceec----CcccccceECCCCCEEEEEEC----CeEEEEeCCCCCcEEEecCCCcCCeEcccc
Confidence              2577888887654   222    134678899997667777742    488888887655443332210         


Q ss_pred             ---------cCceEEEEeCCCCEEEEEe
Q psy14258        217 ---------VYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       217 ---------~~P~gl~vD~~~~~ly~~d  235 (440)
                               ....++++.+.+.+|+++.
T Consensus       160 ~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          160 DWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             CHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             cceeeeecccCcccEEECCCCCEEEEEE
Confidence                     1224789998888888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.40  E-value=0.7  Score=43.98  Aligned_cols=239  Identities=7%  Similarity=-0.027  Sum_probs=134.4

Q ss_pred             ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE
Q psy14258        174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT  253 (440)
Q Consensus       174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~  253 (440)
                      .+++++.|...+|......   +.|...+++.......+...-.....+++.+.+..|+.+. ..+.|..-++.......
T Consensus       126 v~~v~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAED---RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             EEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEcCC---CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec-CCCcEEEEECCCCeeEE
Confidence            5789999854455544433   5788888875543333333344567899987777776554 55678777775543332


Q ss_pred             EecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEecC--------CCCeEEEEeccCCCCCCCCCcee
Q psy14258        254 IRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIANF--------SRPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       254 i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~~~--------~~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      ....  -.....+++..  +.++.+-...+.|...+..+++....+...        .....+.+.          |++.
T Consensus       202 ~~~~--~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~----------~~g~  269 (393)
T 1erj_A          202 TLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT----------RDGQ  269 (393)
T ss_dssp             EEEC--SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC----------TTSS
T ss_pred             EEEc--CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC----------CCCC
Confidence            2221  23455666653  355555556777877787666554433110        112233332          3433


Q ss_pred             EEeecCCccEEEEEEcCCCCCC--------ceeeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTT--------EQAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI  394 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~--------~~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~  394 (440)
                      ++++-+..+.|+..++......        ......+. .-.....+++.+.+..|. +-...+.|+.-++........+
T Consensus       270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEE
Confidence            4444444578888877543110        01111121 222456888988777554 4456788888887654444444


Q ss_pred             ECCCCCeeeEEEecC-----CCcEEEEeCCCCeEEEEEeC
Q psy14258        395 DTGIYNVEGMAVDWM-----ANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       395 ~~~~~~~~glAvD~~-----~~~lYwtd~~~~~I~~~~~~  429 (440)
                      ...-..+..+++...     .+++..+-...++|.+-++.
T Consensus       349 ~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            444456777777532     35677777777888887765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.37  E-value=0.67  Score=43.43  Aligned_cols=271  Identities=10%  Similarity=0.035  Sum_probs=149.1

Q ss_pred             cccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC--
Q psy14258        134 LDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE--  207 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~--  207 (440)
                      ..... ++.+.++.|+-+   +.|.+-+.........+.........+++.|. |.++.+-...  +.|...++....  
T Consensus        65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d--~~i~v~~~~~~~~~  141 (354)
T 2pbi_B           65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-GCAIACGGLD--NKCSVYPLTFDKNE  141 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-SSEEEEESTT--SEEEEEECCCCTTC
T ss_pred             CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-CCEEEEeeCC--CCEEEEEEeccccc
Confidence            34455 555555433333   67777776554444333444456789999994 5555554333  466666654221  


Q ss_pred             ----ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec---CEEEEEecCC
Q psy14258        208 ----RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE---NNLFVTSWRN  280 (440)
Q Consensus       208 ----~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~---~~ly~td~~~  280 (440)
                          ....+...-.....+++.+.+..|+-+. ..+.|..-++..........+. ......+++..   +.++++-...
T Consensus       142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s-~D~~v~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTAS-GDGTCALWDVESGQLLQSFHGH-GADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             CSGGGCEEEEECSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEECC-SSCEEEEEECCCSSCCEEEEEETT
T ss_pred             cccccceeeeccCCcEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEEeCCCCCEEEEEeCC
Confidence                1111111223456788876666666554 5667877777544333222221 22344555532   3555665667


Q ss_pred             CeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec--C-CC
Q psy14258        281 QSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT--D-LK  356 (440)
Q Consensus       281 ~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~--~-~~  356 (440)
                      +.|...+..+++....+..-. ....+.+.          |++.++++-+..+.|+..++...    .......  . ..
T Consensus       220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~----------p~~~~l~s~s~D~~v~lwd~~~~----~~~~~~~~~~~~~  285 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFETHESDVNSVRYY----------PSGDAFASGSDDATCRLYDLRAD----REVAIYSKESIIF  285 (354)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTT----EEEEEECCTTCCS
T ss_pred             CeEEEEECCCCcEEEEecCCCCCeEEEEEe----------CCCCEEEEEeCCCeEEEEECCCC----cEEEEEcCCCccc
Confidence            888888887776655554322 23344433          33334444444578888887654    1111111  1 12


Q ss_pred             CceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258        357 RPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINV  425 (440)
Q Consensus       357 ~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~  425 (440)
                      ....++|.+.+..++.. ...+.|+..++........+...-+.+..|++.+.+..|.-.. ..++|.+
T Consensus       286 ~~~~~~~s~~g~~l~~g-~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs-~D~~v~v  352 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAG-YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS-WDHTLRV  352 (354)
T ss_dssp             CEEEEEECTTSSEEEEE-ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSEEEE
T ss_pred             ceeEEEEeCCCCEEEEE-ECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc-CCCCEEe
Confidence            45689999987765544 4678888888754333333333456788999988766554443 3455544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.36  E-value=0.6  Score=42.75  Aligned_cols=275  Identities=9%  Similarity=-0.005  Sum_probs=149.5

Q ss_pred             cccce-eeeecCCcEEEe----ceEEEEecCCce-----EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258        134 LDGTE-RFPMVTHKIVYP----EAIYFCTHYMEH-----CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~-----~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~  203 (440)
                      ..+.+ |+.+.++++.++    +.|.+-++....     ....+.........+++.|...+|+.....   +.|...+.
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d---~~i~~~~~  115 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD---GTLRLWDL  115 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEET
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc---ccceEEee
Confidence            34556 776666667776    567776665422     122223334678899999965555554443   57777777


Q ss_pred             CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec---CEEEEEecCC
Q psy14258        204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE---NNLFVTSWRN  280 (440)
Q Consensus       204 dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~---~~ly~td~~~  280 (440)
                      ..................+...+.+..|+.+. ..+.+...+..+.................+++..   +.++.+-...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d  194 (340)
T 4aow_A          116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS-RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD  194 (340)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             cccceeeeecCCCCceeEEEEeecCccceeec-CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence            66554444443444455666665555555443 4456666665554443333211122233444432   2455555556


Q ss_pred             CeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCce
Q psy14258        281 QSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPS  359 (440)
Q Consensus       281 ~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~  359 (440)
                      +.|...+..+++....+..-. ....+.+.          |++.++++-+..+.|+..++...    .....+..-....
T Consensus       195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s----------~~~~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~~~~v~  260 (340)
T 4aow_A          195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVS----------PDGSLCASGGKDGQAMLWDLNEG----KHLYTLDGGDIIN  260 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEC----------TTSSEEEEEETTCEEEEEETTTT----EEEEEEECSSCEE
T ss_pred             CEEEEEECCCCceeeEecCCCCcEEEEEEC----------CCCCEEEEEeCCCeEEEEEeccC----ceeeeecCCceEE
Confidence            777777766665544443322 23344332          34334444444578888887655    2333333334556


Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE---------ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        360 VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI---------DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       360 ~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~---------~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      .+.+.+.+..+  +-...+.|+..++++.......         ...-..+..|++.+.++.|+ +-...+.|.+-++.
T Consensus       261 ~~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          261 ALCFSPNRYWL--CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF-AGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEEECSSSSEE--EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE-EEETTSCEEEEEEE
T ss_pred             eeecCCCCcee--eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE-EEeCCCEEEEEeCC
Confidence            77787754433  3334677777777653211111         12234578899987666554 43446788888865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.35  E-value=1.2  Score=46.03  Aligned_cols=275  Identities=12%  Similarity=0.048  Sum_probs=149.1

Q ss_pred             cccce-eeeecCCcEEEe----ceEEEEecCCc-----eEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258        134 LDGTE-RFPMVTHKIVYP----EAIYFCTHYME-----HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~----~~I~~~~~dg~-----~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~  203 (440)
                      ....+ ++.+.+.+++++    +.|.+-++...     .....+.........+++.|...+|.-....   +.|...++
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D---g~v~vwd~  459 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD---GELRLWDL  459 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT---SEEEEEET
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEC
Confidence            33445 555556667777    67777776532     1122233344668899999955555544443   58888888


Q ss_pred             CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCC--ccCceeeeeEecC---EEEEEec
Q psy14258        204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGF--PVQNLYDITVFEN---NLFVTSW  278 (440)
Q Consensus       204 dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~--~~~~p~gl~~~~~---~ly~td~  278 (440)
                      ........+...-.....+++.+.+..|.-+. ..+.|..-+..+.....+....  .......+++..+   .+..+-.
T Consensus       460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  538 (694)
T 3dm0_A          460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS-RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS  538 (694)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEe-CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence            65433333333334567888987776666554 4567777776655444443311  1122355665543   3455555


Q ss_pred             CCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCC
Q psy14258        279 RNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKR  357 (440)
Q Consensus       279 ~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~  357 (440)
                      ..+.|...+..+++....+..-. ....+.+.          |++.++++-+..+.|+..++...    .....+..-..
T Consensus       539 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------pdg~~l~sg~~Dg~i~iwd~~~~----~~~~~~~~~~~  604 (694)
T 3dm0_A          539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS----------PDGSLCASGGKDGVVLLWDLAEG----KKLYSLEANSV  604 (694)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------TTSSEEEEEETTSBCEEEETTTT----EEEECCBCSSC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe----------CCCCEEEEEeCCCeEEEEECCCC----ceEEEecCCCc
Confidence            67777777776655544443322 23344433          34444555444578888887654    22222223334


Q ss_pred             ceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-------------------CCCCCeeeEEEecCCCcEEEEeC
Q psy14258        358 PSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID-------------------TGIYNVEGMAVDWMANNLYWTDA  418 (440)
Q Consensus       358 p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-------------------~~~~~~~glAvD~~~~~lYwtd~  418 (440)
                      ..+++|.+.+..+..+.  .+.|...++........+.                   .....+..|++.+.++.|+- -.
T Consensus       605 v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s-gs  681 (694)
T 3dm0_A          605 IHALCFSPNRYWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS-GY  681 (694)
T ss_dssp             EEEEEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE-EE
T ss_pred             EEEEEEcCCCcEEEEEc--CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE-Ec
Confidence            56888888765444332  4456666665432111111                   01112467788776665554 44


Q ss_pred             CCCeEEEEEeC
Q psy14258        419 GIGTINVAKIS  429 (440)
Q Consensus       419 ~~~~I~~~~~~  429 (440)
                      ..++|.+-++.
T Consensus       682 ~Dg~i~iW~i~  692 (694)
T 3dm0_A          682 TDGVIRVWGIG  692 (694)
T ss_dssp             TTSEEEEEEC-
T ss_pred             CCCeEEEEecc
Confidence            46778877664

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.26  E-value=0.92  Score=43.90  Aligned_cols=254  Identities=5%  Similarity=-0.034  Sum_probs=142.2

Q ss_pred             ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeC-CCC
Q psy14258        151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF-PTK  229 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~-~~~  229 (440)
                      +.|.+.++........+.........++..+ .+.|.-....   +.|...+++.......+.........+++.+ .++
T Consensus       142 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  217 (464)
T 3v7d_B          142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTD---RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI  217 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECS-TTEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC
T ss_pred             CcEEEEECCCCcEEEEEeCCCcCEEEEEEcC-CCEEEEEeCC---CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC
Confidence            6788888776655544444556788999987 4555554443   5788888865443333332334456677764 233


Q ss_pred             EEEEEeCCCCcEEEEEccCCCcE-----------------------EEecCCccCceeeeeEecCEEEEEecCCCeEEEE
Q psy14258        230 HVYWVDTYLDFIDRINYDGTDRK-----------------------TIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRV  286 (440)
Q Consensus       230 ~ly~~d~~~~~i~~~~~dG~~~~-----------------------~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~  286 (440)
                      .++++-...+.|...++......                       ....+ .......+...++.++... .++.|...
T Consensus       218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-~d~~i~vw  295 (464)
T 3v7d_B          218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG-HMASVRTVSGHGNIVVSGS-YDNTLIVW  295 (464)
T ss_dssp             EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC-CSSCEEEEEEETTEEEEEE-TTSCEEEE
T ss_pred             CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC-ccceEEEEcCCCCEEEEEe-CCCeEEEE
Confidence            44444455667777776543211                       11111 1223344555555665554 46778777


Q ss_pred             eccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEE
Q psy14258        287 NKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYH  364 (440)
Q Consensus       287 ~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d  364 (440)
                      +..+++....+..-. ....+.+.          |++..+++-+..+.|+..++...    .....+.+ -.....++++
T Consensus       296 d~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~  361 (464)
T 3v7d_B          296 DVAQMKCLYILSGHTDRIYSTIYD----------HERKRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLS  361 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE----------TTTTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEC
T ss_pred             ECCCCcEEEEecCCCCCEEEEEEc----------CCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEc
Confidence            876665555443322 33444443          23223333334478888887654    22223322 2244577776


Q ss_pred             cCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        365 EKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       365 ~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                        ++.+ ++-...++|...++.......... .-.....+++...+..|....  .+.|.+.++..
T Consensus       362 --~~~l-~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~  421 (464)
T 3v7d_B          362 --DKFL-VSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS--ENQFNIYNLRS  421 (464)
T ss_dssp             --SSEE-EEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE--TTEEEEEETTT
T ss_pred             --CCEE-EEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec--CCeEEEEECCC
Confidence              4544 454568889988888654433333 334456677776565444443  57899998765

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=96.26  E-value=0.00086  Score=55.36  Aligned_cols=44  Identities=32%  Similarity=0.671  Sum_probs=36.6

Q ss_pred             ceecCCCCceeecccCCC-CCCCCC-CcccCCCceEEc-cCCeeeec
Q psy14258          2 TFRGPNKTQCVDADECLI-DGSCDQ-TCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         2 ~~~~~~~~~C~d~~~C~~-~~~Cs~-~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      ||.+.+++.|+|++||.. ++.|.+ .|.|++++|+|. +.||.+..
T Consensus        95 Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A           95 GYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDA  141 (147)
T ss_dssp             TEEEEETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCT
T ss_pred             ccccCCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCC
Confidence            455446789999999984 578986 899999999999 99998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.22  E-value=1.3  Score=45.11  Aligned_cols=346  Identities=8%  Similarity=-0.042  Sum_probs=175.2

Q ss_pred             eEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccc
Q psy14258         48 THLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRP  127 (440)
Q Consensus        48 ~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v  127 (440)
                      .|+++..+.     |...++........+..+...+.+++|++.++.|--.. ..+.|+..++........        .
T Consensus        32 ~l~~~~~~~-----v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~-~d~~v~lWd~~~~~~~~~--------~   97 (611)
T 1nr0_A           32 KIQYCNGTS-----VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD-VHGNVRIWDTTQTTHILK--------T   97 (611)
T ss_dssp             EEEEEETTE-----EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEESSSTTCCEE--------E
T ss_pred             EEEeCCCCE-----EEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEe-CCCCEEEeECCCCcceee--------E
Confidence            455666666     77777754333322222222389999999866554444 446665555432111000        0


Q ss_pred             eeeccccccce-eeeecCCcEEEe--c-----eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEE
Q psy14258        128 MLERSLLDGTE-RFPMVTHKIVYP--E-----AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLE  199 (440)
Q Consensus       128 ~~~~~~~~p~~-avD~~~~~lY~~--~-----~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~  199 (440)
                      .+...-..... |+++.++.|..+  +     .|...+. |..... +.........+++.|....++.+-...  ..|.
T Consensus        98 ~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~-l~gh~~~v~~v~f~p~~~~~l~s~s~D--~~v~  173 (611)
T 1nr0_A           98 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGN-LTGQARAMNSVDFKPSRPFRIISGSDD--NTVA  173 (611)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBC-CCCCSSCEEEEEECSSSSCEEEEEETT--SCEE
T ss_pred             eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCcce-ecCCCCCceEEEECCCCCeEEEEEeCC--CeEE
Confidence            11122234566 888777765544  1     2333331 222111 222345678999999655445544333  4666


Q ss_pred             EEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecC-----CccCceeeeeEecC-E
Q psy14258        200 RSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKG-----FPVQNLYDITVFEN-N  272 (440)
Q Consensus       200 r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~-----~~~~~p~gl~~~~~-~  272 (440)
                      ..+.........+...-.....+++.+.+..|.-+ ...+.|..-+.. |.....+...     .......++++..+ .
T Consensus       174 lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~-s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~  252 (611)
T 1nr0_A          174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST-GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  252 (611)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             EEECCCCeEeeeeccccCceEEEEECCCCCEEEEE-ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence            66654322222222223457789998766555444 456778877754 4333333111     11234577888754 4


Q ss_pred             EEEEecCCCeEEEEeccCCCceEEEecCCCC--eEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeee
Q psy14258        273 LFVTSWRNQSIIRVNKFNSDDYETIANFSRP--FAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIM  350 (440)
Q Consensus       273 ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p--~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~  350 (440)
                      ...+-...+.|...+..+++....+......  ..+.+...         ...|+.. +..+.|+..++...    ....
T Consensus       253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~s~-s~d~~i~~~~~~~~----~~~~  318 (611)
T 1nr0_A          253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---------KQALVSI-SANGFINFVNPELG----SIDQ  318 (611)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC---------SSCEEEE-ETTCCEEEEETTTT----EEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc---------CCEEEEE-eCCCcEEEEeCCCC----Ccce
Confidence            5556556778887787666655443321110  11111110         1122222 22366666665443    2222


Q ss_pred             eecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE-ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        351 PITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI-DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       351 ~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~-~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      .+.+ .....+++|.+.++.|+-+. ..++|+.-++.......+. ...-..+.++++.. .+.|+-+ ...++|.+.++
T Consensus       319 ~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~l~s~-s~d~~v~~w~~  395 (611)
T 1nr0_A          319 VRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTV-SWDDHLKVVPA  395 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCEEEE-ETTTEEEEECS
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeecccCCcceEEEEEECC-CCcEEEE-EcCCceEEeec
Confidence            2222 23566899999888776554 6778888887754332221 12234566777763 3444433 33445555554


Q ss_pred             C
Q psy14258        429 S  429 (440)
Q Consensus       429 ~  429 (440)
                      .
T Consensus       396 ~  396 (611)
T 1nr0_A          396 G  396 (611)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=96.18  E-value=0.0016  Score=44.33  Aligned_cols=27  Identities=26%  Similarity=0.623  Sum_probs=24.0

Q ss_pred             CCCCCCCCcccCC-CceEEc-cCCeeeec
Q psy14258         19 IDGSCDQTCTNTH-LSYTYT-DEGFSFQG   45 (440)
Q Consensus        19 ~~~~Cs~~C~n~~-~~~~C~-~~g~~l~~   45 (440)
                      .++.|+|.|.|++ ++|.|. ++||.|.+
T Consensus         5 ~nggC~~~C~n~~~gs~~C~C~~Gy~L~~   33 (59)
T 2wph_E            5 KNGRCEQFCKNSADNKVVCSCTEGYRLAE   33 (59)
T ss_dssp             GGGGCSSEEEECSTTCEEEECCTTEEECT
T ss_pred             CCCCcCCEeEeCCCCCEEeeCCCCcEECC
Confidence            3678999999999 699999 99999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.17  E-value=0.97  Score=43.29  Aligned_cols=121  Identities=8%  Similarity=0.021  Sum_probs=68.2

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC-CCCceeEE-------ecCccCceEEEEeCCCCEEEEEeCCCCcE
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMV-------THKIVYPYGVTVDFPTKHVYWVDTYLDFI  241 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d-G~~~~~l~-------~~~~~~P~gl~vD~~~~~ly~~d~~~~~i  241 (440)
                      ......++++.| .|.++.+- . + +.|...+++ +.....++       ...-.....+++++.+..++.+-...+.|
T Consensus       176 h~~~v~~~~~~~-~~~~l~s~-~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          176 HTYHINSISINS-DYETYLSA-D-D-LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSSCCCEEEECT-TSSEEEEE-C-S-SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             CCcceEEEEEcC-CCCEEEEe-C-C-CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            345678999999 46666664 3 3 688888887 32222221       11123467899987763444444456788


Q ss_pred             EEEEccCCCc-----EEEecCCc----------cCceeeeeEecC-EEEEEecCCCeEEEEeccC-CCceE
Q psy14258        242 DRINYDGTDR-----KTIRKGFP----------VQNLYDITVFEN-NLFVTSWRNQSIIRVNKFN-SDDYE  295 (440)
Q Consensus       242 ~~~~~dG~~~-----~~i~~~~~----------~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~-g~~~~  295 (440)
                      ...++.....     ..+.....          ......+++..+ .+..+-.. +.|...+..+ ++...
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence            8888765443     33322210          014567777654 33333333 7777777665 44433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.73  Score=48.32  Aligned_cols=254  Identities=8%  Similarity=-0.046  Sum_probs=136.2

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE--ecCccCceEEEEeCC--CCEEEEEeCCCCcEEEEE
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV--THKIVYPYGVTVDFP--TKHVYWVDTYLDFIDRIN  245 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~--~~~~~~P~gl~vD~~--~~~ly~~d~~~~~i~~~~  245 (440)
                      ......+++++|...+|+.+...   +.|...++++.....+.  ...-.....+++.+.  +..|+.+ ...+.|...+
T Consensus         8 H~~~V~~l~~s~dg~~latg~~d---g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~-s~Dg~I~vwd   83 (753)
T 3jro_A            8 HNELIHDAVLDYYGKRLATCSSD---KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC-SYDGKVLIWK   83 (753)
T ss_dssp             CCCCEEEECCCSSSCCEEEEETT---TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEE-ETTSCEEEEE
T ss_pred             CcceeEEEEECCCCCeEEEEECC---CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEE-eCCCeEEEEE
Confidence            34567788888865555555443   57777777643333222  122334567888655  4555544 4567788888


Q ss_pred             ccCCCcEEEec-CCccCceeeeeEec---CEEEEEecCCCeEEEEeccCCCceE--EEecCC-CCeEEEEeccCC-CCCC
Q psy14258        246 YDGTDRKTIRK-GFPVQNLYDITVFE---NNLFVTSWRNQSIIRVNKFNSDDYE--TIANFS-RPFAIHIYHRQK-QPDA  317 (440)
Q Consensus       246 ~dG~~~~~i~~-~~~~~~p~gl~~~~---~~ly~td~~~~~i~~~~~~~g~~~~--~~~~~~-~p~~~~v~~~~~-qp~~  317 (440)
                      +++.....+.. .........+++..   +.++.+-..++.|...+..++....  .+.... ....+.. +|.. .+..
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~-~p~~~~~~~  162 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APATIEEDG  162 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE-CCCC-----
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEe-cCccccccc
Confidence            77654322222 11133456777653   3444454567788777776653322  222222 2233333 2211 0000


Q ss_pred             C---CCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCC--CEEEEEECCCCeEEEEecCCCCeE
Q psy14258        318 L---KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKE--EYIYYAELTSYVIERRKMFGRGKE  391 (440)
Q Consensus       318 ~---~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~--~~vy~~d~~~~~I~r~~~~g~~~~  391 (440)
                      .   .+++.++++-+..+.|+..++............+.+ -....++++.+.+  +.+.++-...+.|...++......
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~  242 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  242 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence            0   113333444344578888887655111112222222 2346689999984  556666667888888888753211


Q ss_pred             ---EEEE--CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        392 ---VVID--TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       392 ---~~~~--~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                         .+..  ..-..+..+++.+.++.|... ...+.|.+.+++
T Consensus       243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~Dg~I~vwd~~  284 (753)
T 3jro_A          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALS-GGDNKVTLWKEN  284 (753)
T ss_dssp             CBCCBSSSSCCSSCCCCEEECTTTCCEEEE-CSSSCEECCBCC
T ss_pred             ceeEEeccCCCCCceEEEEEcCCCCEEEEE-cCCCEEEEEecC
Confidence               1111  123457789999866655444 456789988877

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.15  E-value=1.5  Score=45.38  Aligned_cols=277  Identities=9%  Similarity=0.061  Sum_probs=148.1

Q ss_pred             eeeecCCcEEEe--------ceEEEEecCCceEEEEEcC------CCCCceEEEEcCCCCeEEEEE-cCC-CCCcEEEEe
Q psy14258        139 RFPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDL------NLSKPRGIALDPTSGYMFFTK-WGA-TRPMLERSL  202 (440)
Q Consensus       139 avD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~------~~~~P~~iavd~~~g~lywtd-~~~-~~~~I~r~~  202 (440)
                      +.-..++.+|+.        ..+.|...++.. ++++..      ......++++.|...+|-|+. .+. ....|...+
T Consensus        83 ~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~-~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~d  161 (693)
T 3iuj_A           83 APFREGRYHYFFKNDGLQNQNVLWRQQEGKPA-EVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMD  161 (693)
T ss_dssp             CCEEETTEEEEEEECSSCSSCEEEEECTTSCC-EEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEE
T ss_pred             CCEEECCEEEEEEEcCCCceeEEEEeCCCCCc-EEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEE
Confidence            334557778877        245565565554 455542      112466889999766665553 322 124789999


Q ss_pred             CCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC------------CCcEEEEEccCCC--cEEEecCCc--cCceeee
Q psy14258        203 LDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY------------LDFIDRINYDGTD--RKTIRKGFP--VQNLYDI  266 (440)
Q Consensus       203 ~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~------------~~~i~~~~~dG~~--~~~i~~~~~--~~~p~gl  266 (440)
                      +++............ -.+++.. .++.||++...            ...|+..++....  ...+.....  -..-.++
T Consensus       162 l~tg~~~~~~~~~~k-~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~  239 (693)
T 3iuj_A          162 VESKQPLETPLKDVK-FSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGA  239 (693)
T ss_dssp             TTTCSEEEEEEEEEE-SCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEE
T ss_pred             CCCCCCCccccCCce-eccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEE
Confidence            987664433221111 1244555 57778777543            2357777764332  244544321  0112345


Q ss_pred             eEec--CEEEEEecC---CCeEEEEeccCCC-ceEEE-ecCCCCeEEEEeccCCCCCCCCCceeEEeecCC--ccEEEEE
Q psy14258        267 TVFE--NNLFVTSWR---NQSIIRVNKFNSD-DYETI-ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK--PAIIKGL  337 (440)
Q Consensus       267 ~~~~--~~ly~td~~---~~~i~~~~~~~g~-~~~~~-~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~--~~~I~~i  337 (440)
                      ++..  .+|+++...   .+.|+.++..++. ....+ .....-... +.+        ..+.+++.++..  +.+|..+
T Consensus       240 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~--------~g~~l~~~t~~~~~~~~l~~~  310 (693)
T 3iuj_A          240 TVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDN--------KGSTLYLLTNRDAPNRRLVTV  310 (693)
T ss_dssp             EECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEE--------ETTEEEEEECTTCTTCEEEEE
T ss_pred             EEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eec--------cCCEEEEEECCCCCCCEEEEE
Confidence            5543  367665432   2477777765543 22322 222211111 221        112444555432  4789999


Q ss_pred             EcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC--CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEE
Q psy14258        338 TFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS--YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYW  415 (440)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~--~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYw  415 (440)
                      ++++. ........+..-...  +++.+.+++|+++....  ..|+..+++|.....+...+.....+++.++.++.|++
T Consensus       311 d~~~~-~~~~~~~l~~~~~~~--~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~  387 (693)
T 3iuj_A          311 DAANP-GPAHWRDLIPERQQV--LTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF  387 (693)
T ss_dssp             ETTSC-CGGGCEEEECCCSSC--EEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred             eCCCC-CccccEEEecCCCCE--EEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEE
Confidence            98875 221111111221122  27777788998885443  47899999876544443334445566777777788887


Q ss_pred             EeCC---CCeEEEEEeCC
Q psy14258        416 TDAG---IGTINVAKISD  430 (440)
Q Consensus       416 td~~---~~~I~~~~~~g  430 (440)
                      +-..   -.+|..+++.+
T Consensus       388 ~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          388 GFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EEECSSSCCEEEEECTTT
T ss_pred             EecCCCCCCEEEEEECCC
Confidence            7432   26788888765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.14  E-value=0.2  Score=52.10  Aligned_cols=97  Identities=10%  Similarity=-0.031  Sum_probs=65.9

Q ss_pred             ceEEEEecCCceEEEEEcCCC---CCceEEEEcCCCCeEEEEEcCC-------CCCcEEEEeCCCCCc---eeEEecCcc
Q psy14258        151 EAIYFCTHYMEHCMIAIDLNL---SKPRGIALDPTSGYMFFTKWGA-------TRPMLERSLLDGTER---FPMVTHKIV  217 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~~~~---~~P~~iavd~~~g~lywtd~~~-------~~~~I~r~~~dG~~~---~~l~~~~~~  217 (440)
                      +.|.+.+.++...+.+.....   .....+++.|...+|.++....       . ..|...++++...   ..+.    .
T Consensus        36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~-~~i~~~d~~~g~~~~~~~l~----~  110 (719)
T 1z68_A           36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT-ATYYIYDLSNGEFVRGNELP----R  110 (719)
T ss_dssp             SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE-EEEEEEETTTTEECCSSCCC----S
T ss_pred             CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecc-eEEEEEECCCCccccceecC----c
Confidence            678899998877776654211   1367899999777777765411       1 4899999987654   3331    2


Q ss_pred             CceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEE
Q psy14258        218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI  254 (440)
Q Consensus       218 ~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i  254 (440)
                      ....+++.|.+.+|.++.  .+.|...++++.....+
T Consensus       111 ~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l  145 (719)
T 1z68_A          111 PIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQI  145 (719)
T ss_dssp             SBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEEC
T ss_pred             ccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEE
Confidence            356788888888888875  45788888866555444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.12  E-value=0.95  Score=42.78  Aligned_cols=277  Identities=8%  Similarity=-0.010  Sum_probs=150.3

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc--
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER--  208 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~--  208 (440)
                      .... ++.+.++.|.-+   +.|.+-+.........+.........+++.|. |.+..+-...  ..|...++.....  
T Consensus        68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d--~~v~iw~~~~~~~~~  144 (380)
T 3iz6_a           68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLD--SACSIFNLSSQADRD  144 (380)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSS--SCCEEEECCCCSSCC
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-CCEEEEeeCC--CcEEEEECCCCcccc
Confidence            3444 555555544433   67888887765554444445566788999995 4444443222  4566666542110  


Q ss_pred             -----eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-C---CccCceeeeeEe--cCEEEEEe
Q psy14258        209 -----FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-G---FPVQNLYDITVF--ENNLFVTS  277 (440)
Q Consensus       209 -----~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~---~~~~~p~gl~~~--~~~ly~td  277 (440)
                           ...+...-.....+.+.+..+..+.+-...+.|..-++.......... .   ........+++.  ++.++.+-
T Consensus       145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg  224 (380)
T 3iz6_a          145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG  224 (380)
T ss_dssp             CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred             CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence                 001111112233344444444434444566677777765444333321 1   012234556654  34666776


Q ss_pred             cCCCeEEEEeccC-CCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec--
Q psy14258        278 WRNQSIIRVNKFN-SDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT--  353 (440)
Q Consensus       278 ~~~~~i~~~~~~~-g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~--  353 (440)
                      ...+.|...+... ++....+.+-. ....+.+.          |++.++++-+..+.|+..++...    .......  
T Consensus       225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~----------p~~~~l~s~s~D~~i~lwd~~~~----~~~~~~~~~  290 (380)
T 3iz6_a          225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF----------PDGQRFGTGSDDGTCRLFDMRTG----HQLQVYNRE  290 (380)
T ss_dssp             ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC----------TTSSEEEEECSSSCEEEEETTTT----EEEEEECCC
T ss_pred             ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe----------cCCCeEEEEcCCCeEEEEECCCC----cEEEEeccc
Confidence            6678887777653 33333443222 34445443          34445555555578888887654    1111111  


Q ss_pred             ------CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE----ECCCCCeeeEEEecCCCcEEEEeCCCCeE
Q psy14258        354 ------DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI----DTGIYNVEGMAVDWMANNLYWTDAGIGTI  423 (440)
Q Consensus       354 ------~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~----~~~~~~~~glAvD~~~~~lYwtd~~~~~I  423 (440)
                            ......+++|.+.+..+ ++-...+.|+..+.........+    ...-+.+..|++.+.+. +..+-...++|
T Consensus       291 ~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i  368 (380)
T 3iz6_a          291 PDRNDNELPIVTSVAFSISGRLL-FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNL  368 (380)
T ss_dssp             CSSSCCSSCSCSEEEECSSSSEE-EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCE
T ss_pred             ccccccccCceEEEEECCCCCEE-EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCE
Confidence                  01124689999987755 45556888988887644332222    12334678899998665 45565667899


Q ss_pred             EEEEeCC
Q psy14258        424 NVAKISD  430 (440)
Q Consensus       424 ~~~~~~g  430 (440)
                      .+-++.|
T Consensus       369 ~iW~~~~  375 (380)
T 3iz6_a          369 KIWAFSG  375 (380)
T ss_dssp             EEEECCS
T ss_pred             EEEecCC
Confidence            9999987

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.99  E-value=0.0018  Score=43.00  Aligned_cols=29  Identities=28%  Similarity=0.723  Sum_probs=24.8

Q ss_pred             CC-CCCCCCCCcccCCC-ceEEc-cCCeeeec
Q psy14258         17 CL-IDGSCDQTCTNTHL-SYTYT-DEGFSFQG   45 (440)
Q Consensus        17 C~-~~~~Cs~~C~n~~~-~~~C~-~~g~~l~~   45 (440)
                      |. .++.|+|.|.|+++ +|.|. ++||.|.+
T Consensus         2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~   33 (53)
T 2bz6_L            2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA   33 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECT
T ss_pred             CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECC
Confidence            44 35789999999998 79999 99999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.98  E-value=1.1  Score=42.14  Aligned_cols=277  Identities=8%  Similarity=-0.013  Sum_probs=142.5

Q ss_pred             ccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEc-------------CCCCCceEEEEcCCCCeEEEEEcCCCCC
Q psy14258        135 DGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAID-------------LNLSKPRGIALDPTSGYMFFTKWGATRP  196 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~-------------~~~~~P~~iavd~~~g~lywtd~~~~~~  196 (440)
                      .... ++.+..+++.++    +.|.+.+++.........             .......++++.|..+.++.+-...  +
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~  122 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD--K  122 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT--S
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC--C
Confidence            3444 555523334444    678888877543211111             1335688999998656555554333  5


Q ss_pred             cEEEEeCCCCCceeEEecCccCceEEEEeCCCC--EEEEEeCCCCcEEEEEccCCC-cEEEecCCccCceeeeeEecC--
Q psy14258        197 MLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK--HVYWVDTYLDFIDRINYDGTD-RKTIRKGFPVQNLYDITVFEN--  271 (440)
Q Consensus       197 ~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~--~ly~~d~~~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~~--  271 (440)
                      .|...+++......... .......+++.+...  .++.+-...+.|...++.... ...+...  ......+++..+  
T Consensus       123 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~  199 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH--RQEILAVSWSPRYD  199 (408)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC--CSCEEEEEECSSCT
T ss_pred             eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC--CCcEEEEEECCCCC
Confidence            88888887655443333 223455667665432  244444566788888876443 3333222  234567777654  


Q ss_pred             EEEEEecCCCeEEEEeccCCCce-EEEecCC----------------CCeEEEEeccCCCCCCCCCce-eEEeecCCccE
Q psy14258        272 NLFVTSWRNQSIIRVNKFNSDDY-ETIANFS----------------RPFAIHIYHRQKQPDALKPST-FLLYAKGKPAI  333 (440)
Q Consensus       272 ~ly~td~~~~~i~~~~~~~g~~~-~~~~~~~----------------~p~~~~v~~~~~qp~~~~~~~-~l~~~~~~~~~  333 (440)
                      .++++-...+.|...+..++... ..+....                ....+.+.          |++ +|+.+ +..+.
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~l~~~-~~dg~  268 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT----------SDGLHLLTV-GTDNR  268 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC----------TTSSEEEEE-ETTSC
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc----------CCCCEEEEe-cCCCe
Confidence            46666666777877777655422 2221100                11122221          333 34433 33477


Q ss_pred             EEEEEcCCCCCCcee---eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCC
Q psy14258        334 IKGLTFKRDGTTEQA---IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMA  410 (440)
Q Consensus       334 I~~i~~~~~~~~~~~---~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~  410 (440)
                      |+..++.........   ...............+.....+ ++ ...+.|...++........+...-..+..+++.+.+
T Consensus       269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV-FV-PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF  346 (408)
T ss_dssp             EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE-EE-EETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred             EEEEECCCCccceeccccccccccccceeEEecCCCceEE-EE-ecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence            888887654110000   0000000011112222222222 22 234667777765443333333344678899999866


Q ss_pred             CcEEEEeCCCCeEEEEEeCC
Q psy14258        411 NNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       411 ~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +.|+ +-...+.|.+.+++.
T Consensus       347 ~~l~-s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          347 QELY-SGSRDCNILAWVPSL  365 (408)
T ss_dssp             TEEE-EEETTSCEEEEEECC
T ss_pred             CEEE-EECCCCeEEEEeCCC
Confidence            5554 545567899999876

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=95.95  E-value=0.0033  Score=46.07  Aligned_cols=34  Identities=35%  Similarity=0.632  Sum_probs=30.4

Q ss_pred             ceeecccCCCCCCCCC-CcccCCCceEEc-cCCeee
Q psy14258         10 QCVDADECLIDGSCDQ-TCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus        10 ~C~d~~~C~~~~~Cs~-~C~n~~~~~~C~-~~g~~l   43 (440)
                      +|+|++||..+..|.+ .|.|++++|+|. ++||.+
T Consensus         1 sC~dideC~~~~~C~~g~C~n~~g~y~C~C~~Gy~~   36 (82)
T 1emn_A            1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL   36 (82)
T ss_dssp             CCCCCCSSSSTTSCSSSEECCCSSCCCEECCTTEEE
T ss_pred             CCCccccCCCCCCcCCCEEEecCCCEEEECCCCeEC
Confidence            5899999997678876 899999999999 999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.94  E-value=1.1  Score=41.94  Aligned_cols=269  Identities=5%  Similarity=-0.093  Sum_probs=140.2

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|++.+++|. +-...+.|...+......  .        -.+......... ++.+.+..|...   +.|.+.+
T Consensus        66 ~V~~~~~s~d~~~l~-s~s~Dg~v~vWd~~~~~~--~--------~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           66 KVLCMDWCKDKRRIV-SSSQDGKVIVWDSFTTNK--E--------HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECTTSSEEE-EEETTSEEEEEETTTCCE--E--------EEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             eEEEEEECCCCCEEE-EEeCCCeEEEEECCCCCc--c--------eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            489999998765554 444446655444322111  0        011122334556 777766544433   5666666


Q ss_pred             cCCc-------eEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCC-CC
Q psy14258        158 HYME-------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFP-TK  229 (440)
Q Consensus       158 ~dg~-------~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~-~~  229 (440)
                      +...       ....+ ........++++.|....|+-+...   +.|...++........+...-.....+++.+. .+
T Consensus       135 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D---~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGD---GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             CCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             Eeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence            5421       11122 1233456788888865555555443   57888887644333233322334556777654 23


Q ss_pred             EEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCC---CeE
Q psy14258        230 HVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSR---PFA  305 (440)
Q Consensus       230 ~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~---p~~  305 (440)
                      .++++-...+.|...++..........+ .-....++++..+ .++.+-...+.|...+..+++...++.....   ...
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS  289 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence            4444445667888888764443333332 1234567777643 4555555677787777766554444432221   122


Q ss_pred             EEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEE
Q psy14258        306 IHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIE  381 (440)
Q Consensus       306 ~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~  381 (440)
                      +.+.          |++.++++-+..+.|+..++...    .....+.+ -....+++|.+.+..|.-++ ..++|+
T Consensus       290 ~~~s----------~~g~~l~~g~~d~~i~vwd~~~~----~~~~~l~~h~~~v~~l~~spdg~~l~sgs-~D~~v~  351 (354)
T 2pbi_B          290 VDFS----------LSGRLLFAGYNDYTINVWDVLKG----SRVSILFGHENRVSTLRVSPDGTAFCSGS-WDHTLR  351 (354)
T ss_dssp             EEEC----------TTSSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSEEE
T ss_pred             EEEe----------CCCCEEEEEECCCcEEEEECCCC----ceEEEEECCCCcEEEEEECCCCCEEEEEc-CCCCEE
Confidence            2222          34334444344478888887443    12222222 23556899998777554333 455554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.91  E-value=1.2  Score=41.98  Aligned_cols=252  Identities=7%  Similarity=-0.050  Sum_probs=124.0

Q ss_pred             cCCcEEEe---ceEEEEecC-CceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC-CCCCceeEEecC-c
Q psy14258        143 VTHKIVYP---EAIYFCTHY-MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL-DGTERFPMVTHK-I  216 (440)
Q Consensus       143 ~~~~lY~~---~~I~~~~~d-g~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~-dG~~~~~l~~~~-~  216 (440)
                      .++.||+.   +.+...+.+ |+..-..-... ......+++  .+.||+....   +.|...+. +|..+...-... .
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~p~~~--~~~v~v~~~~---g~l~~~d~~tG~~~W~~~~~~~~  175 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-EALSRPVVS--DGLVLIHTSN---GQLQALNEADGAVKWTVNLDMPS  175 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSS-CCCSCCEEE--TTEEEEECTT---SEEEEEETTTCCEEEEEECCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-ceEcCCEEE--CCEEEEEcCC---CeEEEEECCCCcEEEEEeCCCCc
Confidence            46778887   578888875 65432221111 111112332  4677776543   46777775 454332221110 0


Q ss_pred             ---cCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCCc--------cC-ceeeeeEecCEEEEEecCCCeE
Q psy14258        217 ---VYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGFP--------VQ-NLYDITVFENNLFVTSWRNQSI  283 (440)
Q Consensus       217 ---~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~~--------~~-~p~gl~~~~~~ly~td~~~~~i  283 (440)
                         ......+++  ++++|+.. ..+.+..++.. |..+........        +. ......+.++.+|+... .+.+
T Consensus       176 ~~~~~~~~~~~~--~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~g~l  251 (376)
T 3q7m_A          176 LSLRGESAPTTA--FGAAVVGG-DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-NGNL  251 (376)
T ss_dssp             ---CCCCCCEEE--TTEEEECC-TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-TSCE
T ss_pred             eeecCCCCcEEE--CCEEEEEc-CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-CcEE
Confidence               001223443  56777653 35678888864 443322221100        00 01223456789998864 6788


Q ss_pred             EEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCC--CCceEE
Q psy14258        284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL--KRPSVI  361 (440)
Q Consensus       284 ~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~--~~p~~l  361 (440)
                      ..++..+|+..-... ...+..+.+.           ++.|+++.. .+.+..++....    ........+  ......
T Consensus       252 ~~~d~~tG~~~w~~~-~~~~~~~~~~-----------~~~l~~~~~-~g~l~~~d~~tG----~~~w~~~~~~~~~~~~~  314 (376)
T 3q7m_A          252 TALDLRSGQIMWKRE-LGSVNDFIVD-----------GNRIYLVDQ-NDRVMALTIDGG----VTLWTQSDLLHRLLTSP  314 (376)
T ss_dssp             EEEETTTCCEEEEEC-CCCEEEEEEE-----------TTEEEEEET-TCCEEEEETTTC----CEEEEECTTTTSCCCCC
T ss_pred             EEEECCCCcEEeecc-CCCCCCceEE-----------CCEEEEEcC-CCeEEEEECCCC----cEEEeecccCCCcccCC
Confidence            999988776543221 2222233222           455666654 267877776544    111111111  111122


Q ss_pred             EEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEEC-CCCCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258        362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT-GIYNVEGMAVDWMANNLYWTDAGIGTINVAK  427 (440)
Q Consensus       362 ~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~-~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~  427 (440)
                      .+.  ++.||+.+ ..+.++.++.......--... +-......++.  +++||+... .+.|..++
T Consensus       315 ~~~--~~~l~v~~-~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~-~G~l~~~~  375 (376)
T 3q7m_A          315 VLY--NGNLVVGD-SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAK-DGTVYSIT  375 (376)
T ss_dssp             EEE--TTEEEEEC-TTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBT-TSCEEEEE
T ss_pred             EEE--CCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeC-CCEEEEEe
Confidence            222  57888886 367888888754322211222 11122334444  778998865 45676654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.83  E-value=0.33  Score=45.51  Aligned_cols=234  Identities=9%  Similarity=-0.000  Sum_probs=113.7

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCce--EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC-
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEH--CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-  207 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~--~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~-  207 (440)
                      .... ++.+.++.|..+   +.|.+.++++..  ....+........++++.|...+|......   +.|...+++... 
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---~~v~vwd~~~~~~   89 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD---RNAYVYEKRPDGT   89 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT---SSEEEC------C
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCCc
Confidence            3445 666655533333   567777776552  222222334567899999965555555544   477777776544 


Q ss_pred             --ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC----cEEEecCCccCceeeeeEecC-EEEEEecCC
Q psy14258        208 --RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD----RKTIRKGFPVQNLYDITVFEN-NLFVTSWRN  280 (440)
Q Consensus       208 --~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~----~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~  280 (440)
                        ........-.....+++.+.+..|+.+. ..+.|...+++...    ...+... .......+++..+ .+..+-...
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQENDWWVSKHLKRP-LRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----CCCCEEECSS-CCSCEEEEEECTTSSEEEEEESS
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCcccceeeeEeecc-cCCCeEEEEEcCCCCEEEEEeCC
Confidence              1112222234567888887777776665 45677777766543    3333321 1345677777654 444444456


Q ss_pred             CeEEEEeccCCCc---------------eEEEecCC---CCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCC
Q psy14258        281 QSIIRVNKFNSDD---------------YETIANFS---RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKR  341 (440)
Q Consensus       281 ~~i~~~~~~~g~~---------------~~~~~~~~---~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~  341 (440)
                      +.|...+...++.               ...+..+.   ....+.+.          |+ .+|+.+ +..+.|+..++..
T Consensus       168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------p~~~~l~~~-~~d~~i~iwd~~~  236 (377)
T 3dwl_C          168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFS----------PSGNALAYA-GHDSSVTIAYPSA  236 (377)
T ss_dssp             SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEEC----------TTSSCEEEE-ETTTEEC-CEECS
T ss_pred             CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEEC----------CCCCEEEEE-eCCCcEEEEECCC
Confidence            6666666532211               11111111   11222222          33 334443 3347888888766


Q ss_pred             CCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        342 DGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       342 ~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      ..........+.. ......++|.+.+..| .+- ..+.+.....+
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~~~~~~~~  280 (377)
T 3dwl_C          237 PEQPPRALITVKLSQLPLRSLLWANESAIV-AAG-YNYSPILLQGN  280 (377)
T ss_dssp             TTSCEEECCCEECSSSCEEEEEEEETTEEE-EEE-SSSSEEEECCC
T ss_pred             CCCcceeeEeecCCCCceEEEEEcCCCCEE-EEE-cCCcEEEEEeC
Confidence            5121110112222 2245689999876644 333 34445566655

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.83  E-value=0.39  Score=45.03  Aligned_cols=240  Identities=8%  Similarity=-0.069  Sum_probs=117.7

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC--ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE--RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT  249 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~--~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~  249 (440)
                      ....++++.|. |.++.+-...  +.|...++++..  ....+...-.....+++.+.+..|+.+. ..+.|...++...
T Consensus        12 ~~v~~~~~s~~-g~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~v~vwd~~~~   87 (377)
T 3dwl_C           12 KPSYEHAFNSQ-RTEFVTTTAT--NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS-QDRNAYVYEKRPD   87 (377)
T ss_dssp             SCCSCCEECSS-SSEEECCCSS--SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE-TTSSEEEC-----
T ss_pred             CcEEEEEECCC-CCEEEEecCC--CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCC
Confidence            45678899985 4444433222  456666665431  1111222234567889987776666665 4567777776554


Q ss_pred             C---cEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCc---eEEEec-CC-CCeEEEEeccCCCCCCCCC
Q psy14258        250 D---RKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDD---YETIAN-FS-RPFAIHIYHRQKQPDALKP  320 (440)
Q Consensus       250 ~---~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~---~~~~~~-~~-~p~~~~v~~~~~qp~~~~~  320 (440)
                      .   ......+ .......+++..+ .++.+-...+.|...+..+++.   ...+.. -. ....+.+.          |
T Consensus        88 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~----------~  156 (377)
T 3dwl_C           88 GTWKQTLVLLR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH----------P  156 (377)
T ss_dssp             -CCCCEEECCC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEEC----------T
T ss_pred             CceeeeeEecc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEc----------C
Confidence            3   2222221 1234566776543 3333333466776666655543   233332 12 23344333          2


Q ss_pred             ceeEEeecCCccEEEEEEcCCCCC-------------C-ceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        321 STFLLYAKGKPAIIKGLTFKRDGT-------------T-EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       321 ~~~l~~~~~~~~~I~~i~~~~~~~-------------~-~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      ++.++++-+..+.|+..++.....             . ......+..-....+++|++.+..|+.+. ..+.|+..++.
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~~  235 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPS  235 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEEC
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe-CCCcEEEEECC
Confidence            332333333347787777753210             0 11111222223466899999887665554 67788888887


Q ss_pred             CCCe----EEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        387 GRGK----EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       387 g~~~----~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      ....    ...+......+..+++.+.++.| .+-. .+.+.+...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~-~~~~~~~~~~  280 (377)
T 3dwl_C          236 APEQPPRALITVKLSQLPLRSLLWANESAIV-AAGY-NYSPILLQGN  280 (377)
T ss_dssp             STTSCEEECCCEECSSSCEEEEEEEETTEEE-EEES-SSSEEEECCC
T ss_pred             CCCCcceeeEeecCCCCceEEEEEcCCCCEE-EEEc-CCcEEEEEeC
Confidence            5443    12223344567889998766544 3333 3344466554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.82  E-value=2.1  Score=44.70  Aligned_cols=236  Identities=5%  Similarity=-0.126  Sum_probs=126.4

Q ss_pred             ccce-eeeecCCcEEEe---ceEEEEecCCceEE--EEEcCCCCCceEEEEcCC--CCeEEEEEcCCCCCcEEEEeCCCC
Q psy14258        135 DGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCM--IAIDLNLSKPRGIALDPT--SGYMFFTKWGATRPMLERSLLDGT  206 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~--~~~~~~~~~P~~iavd~~--~g~lywtd~~~~~~~I~r~~~dG~  206 (440)
                      .+.. ++.+.++.|+.+   +.|.+.++.+....  ..+........++++.|.  ..+|+.+...   +.|...++++.
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D---g~I~vwd~~~~   87 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD---GKVLIWKEENG   87 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT---SCEEEEEEETT
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC---CeEEEEECCCC
Confidence            4455 666666655544   67888887643322  223334456789999875  3444444433   57887777765


Q ss_pred             CceeE--EecCccCceEEEEeCC--CCEEEEEeCCCCcEEEEEccCCC--cEEEecCCccCceeeeeEec----------
Q psy14258        207 ERFPM--VTHKIVYPYGVTVDFP--TKHVYWVDTYLDFIDRINYDGTD--RKTIRKGFPVQNLYDITVFE----------  270 (440)
Q Consensus       207 ~~~~l--~~~~~~~P~gl~vD~~--~~~ly~~d~~~~~i~~~~~dG~~--~~~i~~~~~~~~p~gl~~~~----------  270 (440)
                      ....+  ..........+++.+.  +..|+.+ ...+.|...++....  ......+ .......+++..          
T Consensus        88 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-s~dg~I~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~  165 (753)
T 3jro_A           88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHN  165 (753)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCSSSCCCCEEEEC-CSSCEEEEEECCCC--------
T ss_pred             cccccccccCCCCCeEEEEECCCCCCCEEEEE-eCCCcEEEEEeecCCCcceeEeec-CCCceEEEEecCcccccccccc
Confidence            32222  2222345678888876  5555555 456788888876542  1111221 123345555543          


Q ss_pred             ----CEEEEEecCCCeEEEEeccCCCceE-EEecC---C-CCeEEEEeccCCCCCCCCCc---eeEEeecCCccEEEEEE
Q psy14258        271 ----NNLFVTSWRNQSIIRVNKFNSDDYE-TIANF---S-RPFAIHIYHRQKQPDALKPS---TFLLYAKGKPAIIKGLT  338 (440)
Q Consensus       271 ----~~ly~td~~~~~i~~~~~~~g~~~~-~~~~~---~-~p~~~~v~~~~~qp~~~~~~---~~l~~~~~~~~~I~~i~  338 (440)
                          +.++.+-..++.|...+..++.... ....+   . ....+.+.          |+   +.++++-+..+.|+..+
T Consensus       166 ~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s----------p~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS----------PTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             -CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC----------CCCSSSEEEEEEESSSCEEEEE
T ss_pred             cCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec----------cCCCCCCEEEEEecCCEEEEec
Confidence                3445555557777777766654432 22211   1 23334333          23   34444444457888888


Q ss_pred             cCCCCCCce-eeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        339 FKRDGTTEQ-AIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       339 ~~~~~~~~~-~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      +........ ...... .-....++++++.+..++ +-...+.|+..+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA-LSGGDNKVTLWKEN  284 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEE-EECSSSCEECCBCC
T ss_pred             CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEE-EEcCCCEEEEEecC
Confidence            766411100 111111 122456899999777554 44457778777766

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.71  E-value=1.3  Score=40.87  Aligned_cols=242  Identities=8%  Similarity=-0.020  Sum_probs=128.0

Q ss_pred             CCCCceEEEEcCCC--CeEEEEEcCCCCCcEEEEeCCC--CCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258        170 NLSKPRGIALDPTS--GYMFFTKWGATRPMLERSLLDG--TERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN  245 (440)
Q Consensus       170 ~~~~P~~iavd~~~--g~lywtd~~~~~~~I~r~~~dG--~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~  245 (440)
                      .......|++.|..  |.++.+-...  +.|...+++.  ......+...-.....+++.+.+..|+.+. ..+.|...+
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd  114 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSWA--NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-CDKTAKMWD  114 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEETT--SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEECCC--CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-CCCcEEEEE
Confidence            34567899999965  5555554333  5777777764  222123333345678899987777777654 567888888


Q ss_pred             ccCCCcEEEecCCccCceeeeeE--ecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCce
Q psy14258        246 YDGTDRKTIRKGFPVQNLYDITV--FEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPST  322 (440)
Q Consensus       246 ~dG~~~~~i~~~~~~~~p~gl~~--~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~  322 (440)
                      +.......+...  -.....+++  ..+ .++++-..++.|...+..+++....+........+....           .
T Consensus       115 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----------~  181 (368)
T 3mmy_A          115 LSSNQAIQIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-----------P  181 (368)
T ss_dssp             TTTTEEEEEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET-----------T
T ss_pred             cCCCCceeeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC-----------C
Confidence            876554444332  334567777  444 556666667888888877776665554333333333221           1


Q ss_pred             eEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCC---EEEEEECCCCeEEEEecCCCC---eEEEEEC
Q psy14258        323 FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE---YIYYAELTSYVIERRKMFGRG---KEVVIDT  396 (440)
Q Consensus       323 ~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~---~vy~~d~~~~~I~r~~~~g~~---~~~~~~~  396 (440)
                      .++++.. .+.+...++... .................+++.+...   ..+++-...+.|...+++...   .......
T Consensus       182 ~~~~~~~-~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          182 MAVVATA-ERGLIVYQLENQ-PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             EEEEEEG-GGCEEEEECSSS-CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred             eeEEEeC-CCcEEEEEeccc-cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence            2333322 255666666544 1100000000011122222222111   113333345556555555431   1111111


Q ss_pred             CC------------CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        397 GI------------YNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       397 ~~------------~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .-            ..+..+++.+.++.|+... ..+.|.+.++..
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~  304 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDA  304 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTT
T ss_pred             eecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCC
Confidence            11            1478899998777665554 467899999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.63  E-value=1.4  Score=40.84  Aligned_cols=240  Identities=10%  Similarity=-0.002  Sum_probs=136.4

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT  249 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~  249 (440)
                      ......++++.|...+|.-....   +.|...++........+...-.....+++.+.+..|..+. ..+.|...++...
T Consensus        54 H~~~v~~~~~s~d~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~  129 (340)
T 1got_B           54 HLAKIYAMHWGTDSRLLLSASQD---GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG-LDNICSIYNLKTR  129 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT---TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTC
T ss_pred             CCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEECccC
Confidence            44567889998854444443333   5788777765444333333344567888987776666554 4567777776543


Q ss_pred             C--cEEE--ecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeE
Q psy14258        250 D--RKTI--RKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFL  324 (440)
Q Consensus       250 ~--~~~i--~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l  324 (440)
                      .  ....  ..+ .......+.+..+..+.+-...+.|...+..+++....+..-. ....+.+.          |++.+
T Consensus       130 ~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~----------~~~~~  198 (340)
T 1got_B          130 EGNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA----------PDTRL  198 (340)
T ss_dssp             SBSCEEEEEEEC-CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------TTSSE
T ss_pred             CCcceeEEEecC-CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC----------CCCCE
Confidence            2  1211  111 1223445555544334455557778777876665554443222 23344333          34345


Q ss_pred             EeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-C-CCCCe
Q psy14258        325 LYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID-T-GIYNV  401 (440)
Q Consensus       325 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~-~~~~~  401 (440)
                      +++-+..+.|+..++...    .....+.+ -....+++|.|.++.+. +-...++|...++.......... . ....+
T Consensus       199 l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          199 FVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             EEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             EEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEE-EEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence            555444578888887654    22222222 23467899999877554 44567889888887543222222 1 12357


Q ss_pred             eeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        402 EGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       402 ~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      ..+++.+.++ +..+-...+.|.+.++..
T Consensus       274 ~~~~~s~~g~-~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          274 TSVSFSKSGR-LLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             EEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred             EEEEECCCCC-EEEEECCCCeEEEEEccc
Confidence            8889987665 444545567888888654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=95.58  E-value=1.5  Score=40.70  Aligned_cols=282  Identities=9%  Similarity=0.006  Sum_probs=140.6

Q ss_pred             EEEEEe-----eecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceE
Q psy14258         83 AIYFCT-----HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAI  153 (440)
Q Consensus        83 ~~~i~~-----d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I  153 (440)
                      +.++++     .+..+.+..+-...+.|+..++........   ...+...+......... ++.+.+..|+-+   +.|
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~---~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v  100 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY---FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL  100 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB---SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEE
T ss_pred             hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc---cccccchhccCCCceEEEEECCCCCEEEEEcCCCcE
Confidence            777777     443455666666667776666643221100   00011112222334455 666655544333   678


Q ss_pred             EEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe--cCccCceEEEEeCCCC--
Q psy14258        154 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT--HKIVYPYGVTVDFPTK--  229 (440)
Q Consensus       154 ~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~--~~~~~P~gl~vD~~~~--  229 (440)
                      .+-++........+........++++.|...+|.-+...   +.|...++.+........  ........+++.+...  
T Consensus       101 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R          101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE---REIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETT---SCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred             EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCC---CEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence            888887544433333345678899999965555554433   578888877543222111  1122345566654431  


Q ss_pred             -------EEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCC-CceEEEecC
Q psy14258        230 -------HVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNS-DDYETIANF  300 (440)
Q Consensus       230 -------~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g-~~~~~~~~~  300 (440)
                             .++.+-...+.|...+..+.....+...  -.....+++..+ ....+-...+.|...+.... .....+...
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~  255 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG  255 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS
T ss_pred             cccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC
Confidence                   3333434556677666444322222221  234567777654 44555556777777776332 222233222


Q ss_pred             CCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeee----------cCCCCceEEEEEcCCCE
Q psy14258        301 SRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI----------TDLKRPSVIDYHEKEEY  369 (440)
Q Consensus       301 ~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~----------~~~~~p~~l~~d~~~~~  369 (440)
                      .....+.+ +         |+ .+|..+..  +.|+..++..........+..          ........++|++.+..
T Consensus       256 ~~v~~v~~-s---------p~~~~la~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  323 (343)
T 2xzm_R          256 STINQIAF-N---------PKLQWVAVGTD--QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK  323 (343)
T ss_dssp             SCEEEEEE-C---------SSSCEEEEEES--SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred             CcEEEEEE-C---------CCCCEEEEECC--CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence            22333433 2         23 33443333  567777765441111001110          01123458999998876


Q ss_pred             EEEEECCCCeEEEEec
Q psy14258        370 IYYAELTSYVIERRKM  385 (440)
Q Consensus       370 vy~~d~~~~~I~r~~~  385 (440)
                      |+... ..+.|+..++
T Consensus       324 l~sg~-~Dg~v~~w~~  338 (343)
T 2xzm_R          324 LFAGF-TDGVIRTFSF  338 (343)
T ss_dssp             EEEEE-TTSEEEEEEE
T ss_pred             EEEec-CCceEEEEEE
Confidence            65543 5677766554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.54  E-value=1.9  Score=41.68  Aligned_cols=257  Identities=10%  Similarity=0.005  Sum_probs=139.5

Q ss_pred             eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCC-CCeEEEEEcCCCCCcEEEEeCCCCCceeE--
Q psy14258        139 RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPT-SGYMFFTKWGATRPMLERSLLDGTERFPM--  211 (440)
Q Consensus       139 avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~-~g~lywtd~~~~~~~I~r~~~dG~~~~~l--  211 (440)
                      ++.|..+.++++    +.|.+.+++...+...+.........+++.+. ++.++.+-...  +.|...++........  
T Consensus       167 ~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d--~~i~vwd~~~~~~~~~~~  244 (464)
T 3v7d_B          167 ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD--NTLHVWKLPKESSVPDHG  244 (464)
T ss_dssp             EEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETT--SCEEEEECCCCCCC----
T ss_pred             EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCC--CcEEEeeCCCCccccccc
Confidence            455544444445    68999998866655555545567788888752 34444444333  4777777764432211  


Q ss_pred             ---------------------EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec
Q psy14258        212 ---------------------VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE  270 (440)
Q Consensus       212 ---------------------~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~  270 (440)
                                           ..........+  .+.+..|+.+. ..+.|...++..........+ .......+++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~  320 (464)
T 3v7d_B          245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS-YDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDH  320 (464)
T ss_dssp             --CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE-TTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET
T ss_pred             ccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe-CCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcC
Confidence                                 11111122233  33455666554 456787777754333222222 133456777765


Q ss_pred             C-EEEEEecCCCeEEEEeccCCCceEEEecCCC-CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCcee
Q psy14258        271 N-NLFVTSWRNQSIIRVNKFNSDDYETIANFSR-PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQA  348 (440)
Q Consensus       271 ~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~-p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~  348 (440)
                      + ...++-..++.|...+..+++....+..-.. ...+...           +.+|+.+ +..+.|+..++...    ..
T Consensus       321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-----------~~~l~s~-s~dg~v~vwd~~~~----~~  384 (464)
T 3v7d_B          321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-----------DKFLVSA-AADGSIRGWDANDY----SR  384 (464)
T ss_dssp             TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-----------SSEEEEE-ETTSEEEEEETTTC----CE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc-----------CCEEEEE-eCCCcEEEEECCCC----ce
Confidence            4 4444555677888888877765555543222 2233322           1334443 33478888888665    22


Q ss_pred             eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEE-EEECCCCCeeeEEEecCCCcEEEEeCCCC
Q psy14258        349 IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEV-VIDTGIYNVEGMAVDWMANNLYWTDAGIG  421 (440)
Q Consensus       349 ~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~-~~~~~~~~~~glAvD~~~~~lYwtd~~~~  421 (440)
                      ......-.....+++.+.+..+....  .+.|+..++....... .....-..+..++++  ++.|..+-...+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g  454 (464)
T 3v7d_B          385 KFSYHHTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDG  454 (464)
T ss_dssp             EEEEECTTCCCEEEEEECSSEEEEEE--TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETT
T ss_pred             eeeecCCCCccEEEEEeCCCEEEEec--CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCC
Confidence            22222333445678888777665554  6888888887533211 112233456777776  777777644333

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=95.37  E-value=2  Score=40.99  Aligned_cols=157  Identities=8%  Similarity=-0.040  Sum_probs=85.2

Q ss_pred             cCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEe-c-----CCccCceeeeeEecC--EEEEEecCCCeEEEEe
Q psy14258        217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIR-K-----GFPVQNLYDITVFEN--NLFVTSWRNQSIIRVN  287 (440)
Q Consensus       217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~-~-----~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~  287 (440)
                      .....+++.+.+..|..+  ..+.|...++. +.....+. .     ...-.....+++..+  .++.+-...+.|...+
T Consensus       178 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             cceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence            346688898766666655  47788888876 22222211 0     001223567777654  4556655678888888


Q ss_pred             ccCCCc----eEEEecCC-------------CCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceee
Q psy14258        288 KFNSDD----YETIANFS-------------RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAI  349 (440)
Q Consensus       288 ~~~g~~----~~~~~~~~-------------~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~  349 (440)
                      ..+++.    ...+..-.             ....+.+.          |+ .+|+.+ +. +.|+..++...+..-. .
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------~~g~~l~~~-~~-~~v~iwd~~~~~~~~~-~  322 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS----------HSGRYMMTR-DY-LSVKVWDLNMENRPVE-T  322 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC----------TTSSEEEEE-ES-SEEEEEETTCCSSCSC-C
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEEC----------CCCCEEEEe-eC-CeEEEEeCCCCccccc-e
Confidence            777664    34443222             12233332          34 344444 44 8898888865211110 1


Q ss_pred             eeec-CCC-------------CceEEEEEcCCCEEEEEECCCCeEEEEecCCCC
Q psy14258        350 MPIT-DLK-------------RPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG  389 (440)
Q Consensus       350 ~~~~-~~~-------------~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~  389 (440)
                      .... .+.             ....++|.+.+..| ++-...+.|+..++....
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTCC
T ss_pred             eeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCCc
Confidence            1111 000             01238888887766 555567888888887643

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=94.64  E-value=0.014  Score=53.72  Aligned_cols=33  Identities=24%  Similarity=0.578  Sum_probs=28.4

Q ss_pred             ecccCCC--CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         13 DADECLI--DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        13 d~~~C~~--~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +.|||..  ++.|+|.|.|+.++|+|. ..||.|..
T Consensus         1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~   36 (283)
T 3f1s_B            1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGE   36 (283)
T ss_dssp             --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECT
T ss_pred             CCCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCC
Confidence            4689985  589999999999999999 99999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=94.62  E-value=3.2  Score=39.53  Aligned_cols=260  Identities=11%  Similarity=0.020  Sum_probs=137.6

Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC---C--CceeEEecCccCceEEEEeCCCCEEE
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG---T--ERFPMVTHKIVYPYGVTVDFPTKHVY  232 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG---~--~~~~l~~~~~~~P~gl~vD~~~~~ly  232 (440)
                      .+|.....+.........+|++.|..|.++.+-...  +.|...+++.   .  .+..+....-.....+++.+.+..|+
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  127 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQ--GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFA  127 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETT--SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCC--ceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEE
Confidence            344444444333446788999999445444544333  5777777654   1  11122212234577899987666666


Q ss_pred             EEeCCCCcEEEEEc----cCCCcEEEecC--------C--ccCceeeeeEe--c-CEEEEEecCCCeEEEEeccCCCceE
Q psy14258        233 WVDTYLDFIDRINY----DGTDRKTIRKG--------F--PVQNLYDITVF--E-NNLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       233 ~~d~~~~~i~~~~~----dG~~~~~i~~~--------~--~~~~p~gl~~~--~-~~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      .+. ..+.|...++    .|.........        .  .-.....++..  . +.++++-...+.|...+..+++...
T Consensus       128 s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          128 VSS-KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             EEE-TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEe-CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            554 4566666665    34322221110        0  01122333322  2 3555555567888888887776666


Q ss_pred             EEec---CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee--cCCCCceEEEEEcC---C
Q psy14258        296 TIAN---FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI--TDLKRPSVIDYHEK---E  367 (440)
Q Consensus       296 ~~~~---~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~--~~~~~p~~l~~d~~---~  367 (440)
                      .+..   ......+.+.          |++.++++-+..+.|+..++...    .....+  ..-.....+++.+.   +
T Consensus       207 ~~~~~~h~~~v~~~~~s----------~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          207 IIENSPRHGAVSSICID----------EECCVLILGTTRGIIDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             EEECCGGGCCEEEEEEC----------TTSCEEEEEETTSCEEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             EEccCCCCCceEEEEEC----------CCCCEEEEEcCCCeEEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCC
Confidence            5543   2234455443          33334444344477888887654    222111  22223346655542   3


Q ss_pred             CEEEEEECCCCeEEEEecCCCCeEEEEEC--------------------------CCCCeeeEEEecCCCcEEEEeCCCC
Q psy14258        368 EYIYYAELTSYVIERRKMFGRGKEVVIDT--------------------------GIYNVEGMAVDWMANNLYWTDAGIG  421 (440)
Q Consensus       368 ~~vy~~d~~~~~I~r~~~~g~~~~~~~~~--------------------------~~~~~~glAvD~~~~~lYwtd~~~~  421 (440)
                      +.+.++-...+.|+..++........+..                          ....+..|+++  .+++..+-...+
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~  350 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATS  350 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGT
T ss_pred             ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCC
Confidence            44556666677888888864332222221                          11225668888  446667766678


Q ss_pred             eEEEEEeCCCeeeEE
Q psy14258        422 TINVAKISDFSIRKV  436 (440)
Q Consensus       422 ~I~~~~~~g~~~~~~  436 (440)
                      .|.+.++...+..++
T Consensus       351 ~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          351 SIVMFSLNELSSSKA  365 (437)
T ss_dssp             EEEEEETTCGGGCEE
T ss_pred             eEEEEECCCcccceE
Confidence            999999876443333

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=94.60  E-value=0.0098  Score=45.96  Aligned_cols=36  Identities=25%  Similarity=0.703  Sum_probs=31.6

Q ss_pred             CCceeecccCCC-CCCCCCCcccCCCceEEc-cCCeeee
Q psy14258          8 KTQCVDADECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus         8 ~~~C~d~~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      +..| |++||.. ++.|++.|.+.+++|.|. ++||.+.
T Consensus        24 ~~~C-d~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~   61 (107)
T 2w2n_E           24 QGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV   61 (107)
T ss_dssp             SCCB-SCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE
T ss_pred             CCCC-cCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc
Confidence            4678 7899996 579999999999999999 9999873

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.47  E-value=5.5  Score=41.59  Aligned_cols=193  Identities=8%  Similarity=-0.076  Sum_probs=110.3

Q ss_pred             EEEEEee-ecccEEEEEEcCCC----CceeEEeCCC-CCcceeeccccccceeeccccccce-eeeecCCcEEEe-----
Q psy14258         83 AIYFCTH-YMEHCMIAIDLNLS----KPRGIALDPT-SGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-----  150 (440)
Q Consensus        83 ~~~i~~d-~~~~~ly~~d~~~~----~I~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-----  150 (440)
                      ..++.+. +.+++|.|+....+    .|+..++++. ..  +      ... +. ..  ..+ +..+.++.||++     
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l------~~~-~~-~~--~~~~~WspDg~~l~y~~~d~~  243 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--I------ADK-VS-GT--NGEIVWGPDHTSLFYVTKDET  243 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--C------CCC-EE-EE--CSCCEECSSTTEEEEEEECTT
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--C------Ccc-cc-Cc--eeeEEEecCCCEEEEEEECCC
Confidence            6778899 88888877755433    3777777654 31  1      000 11 11  234 555566678877     


Q ss_pred             ---ceEEEEecCCceE--EEEEcC-CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC-ce--eEEecCccCceE
Q psy14258        151 ---EAIYFCTHYMEHC--MIAIDL-NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RF--PMVTHKIVYPYG  221 (440)
Q Consensus       151 ---~~I~~~~~dg~~~--~~~~~~-~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~-~~--~l~~~~~~~P~g  221 (440)
                         .+|.+.++.+...  +.+... .-..-.++.+.|...+|+|+........|+..++++.. ..  ..+......| -
T Consensus       244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~-~  322 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV-R  322 (751)
T ss_dssp             CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC-C
T ss_pred             CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc-e
Confidence               2688888877532  233332 11234567888877789988755433689999998752 11  2222211111 1


Q ss_pred             EEEe-CCCCEEEEEeCC----CCcEEEEEccC-CCcEE-EecCCccCceeeeeEecCEEEEEecCC--CeEEEEec
Q psy14258        222 VTVD-FPTKHVYWVDTY----LDFIDRINYDG-TDRKT-IRKGFPVQNLYDITVFENNLFVTSWRN--QSIIRVNK  288 (440)
Q Consensus       222 l~vD-~~~~~ly~~d~~----~~~i~~~~~dG-~~~~~-i~~~~~~~~p~gl~~~~~~ly~td~~~--~~i~~~~~  288 (440)
                      ..+| ..+++||+....    ..+|..+++++ ...+. +.....-....+++.+++.|+++-...  ..|+.++.
T Consensus       323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            2343 358888886543    34899999874 33333 333211113456777888888776543  35666664

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=94.36  E-value=0.018  Score=47.29  Aligned_cols=37  Identities=24%  Similarity=0.572  Sum_probs=27.9

Q ss_pred             CCceeecccCCC-CCCCCCCc-ccCCCceEEc-cCCeeee
Q psy14258          8 KTQCVDADECLI-DGSCDQTC-TNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus         8 ~~~C~d~~~C~~-~~~Cs~~C-~n~~~~~~C~-~~g~~l~   44 (440)
                      ++.|+++++|.. ++.|.+.| .+++++|.|. +.||.+.
T Consensus        79 G~~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~  118 (146)
T 1x7a_L           79 GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLA  118 (146)
T ss_dssp             STTTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEEC
T ss_pred             CCcCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeC
Confidence            456887788875 45788888 8888888888 8888764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.31  E-value=3.8  Score=39.05  Aligned_cols=272  Identities=7%  Similarity=-0.019  Sum_probs=149.5

Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceEEEEEc--CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHCMIAID--LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT  213 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~--~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~  213 (440)
                      .+||-.+++.-+   +.|.+-+.....+..++.  .......+|+..|...+|......   +.|...++..........
T Consensus       110 ~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D---g~v~iWd~~~~~~~~~~~  186 (420)
T 4gga_A          110 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS---AEVQLWDVQQQKRLRNMT  186 (420)
T ss_dssp             CEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEEC
T ss_pred             eEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC---CeEEEEEcCCCcEEEEEe
Confidence            588987775544   788888887655544443  223457899999954455444433   578888876443322222


Q ss_pred             cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEE-ecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCC
Q psy14258        214 HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI-RKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNS  291 (440)
Q Consensus       214 ~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i-~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g  291 (440)
                      ..-.....++.|  ...|... ...+.+...+......... ..+ ......++....+ ....+-...+.|...+..++
T Consensus       187 ~h~~~v~~~s~~--~~~l~sg-s~d~~i~~~d~~~~~~~~~~~~~-h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          187 SHSARVGSLSWN--SYILSSG-SRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             CCSSCEEEEEEE--TTEEEEE-ETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             CCCCceEEEeeC--CCEEEEE-eCCCceeEeeecccceeeEEecc-cccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            222334455554  3444433 3455666666544333221 122 1234455555433 44444445666666665554


Q ss_pred             CceE----EEecCCCC-eEEEEeccCCCCCCCCCceeEEeec-CCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc
Q psy14258        292 DDYE----TIANFSRP-FAIHIYHRQKQPDALKPSTFLLYAK-GKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE  365 (440)
Q Consensus       292 ~~~~----~~~~~~~p-~~~~v~~~~~qp~~~~~~~~l~~~~-~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~  365 (440)
                      +...    .......+ ..+. +.+..       ...|..+. +..+.|+..++...    .....+.....+..+.+.+
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~-~~p~~-------~~~la~~~gs~D~~I~iwd~~t~----~~~~~~~~~~~v~~~~~~~  330 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVA-WCPWQ-------SNVLATGGGTSDRHIRIWNVCSG----ACLSAVDAHSQVCSILWSP  330 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEE-ECTTC-------TTEEEEEECTTTCEEEEEETTTT----EEEEEEECSSCEEEEEEET
T ss_pred             cccceeeeeecccCCceeeee-eCCCc-------ccEEEEEeecCCCEEEEEeCCcc----ccceeeccccceeeeeecC
Confidence            3321    11111111 2222 21111       12333322 23467888887655    3333344445677899999


Q ss_pred             CCCEEEEEEC-CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        366 KEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       366 ~~~~vy~~d~-~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .++.++.+.. ..+.|+..++........+...-+.+..||+.+.+..|. |-...++|.+-++..
T Consensus       331 ~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~-S~s~D~tvriWdv~~  395 (420)
T 4gga_A          331 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAAADETLRLWRCFE  395 (420)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEETTTEEEEECCSC
T ss_pred             CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEecCCeEEEEECCC
Confidence            9998887753 468898888865443333333456789999998776554 545567888877653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=94.26  E-value=3.3  Score=38.18  Aligned_cols=258  Identities=12%  Similarity=0.032  Sum_probs=133.2

Q ss_pred             ceEEEEecCCc-------eEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEE
Q psy14258        151 EAIYFCTHYME-------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT  223 (440)
Q Consensus       151 ~~I~~~~~dg~-------~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~  223 (440)
                      +.|.+-++...       .....+.........+++.|...+|.-+...   +.|...++........+...-.....++
T Consensus        49 ~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~lwd~~~~~~~~~~~~h~~~v~~v~  125 (343)
T 2xzm_R           49 KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD---KTLRLWDLRTGTTYKRFVGHQSEVYSVA  125 (343)
T ss_dssp             SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT---SEEEEEETTSSCEEEEEECCCSCEEEEE
T ss_pred             CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC---CcEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence            56666665432       1122233344567899999855555544433   5788888764333222232334567899


Q ss_pred             EeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC-CccCceeeeeEecC-----------EEEEEecCCCeEEEEeccCC
Q psy14258        224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFEN-----------NLFVTSWRNQSIIRVNKFNS  291 (440)
Q Consensus       224 vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~-~~~~~p~gl~~~~~-----------~ly~td~~~~~i~~~~~~~g  291 (440)
                      +.+.+..|+-+. ..+.|...++.+......... ........+++..+           .++.+-...+.|...+. .+
T Consensus       126 ~sp~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~  203 (343)
T 2xzm_R          126 FSPDNRQILSAG-AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NF  203 (343)
T ss_dssp             ECSSTTEEEEEE-TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TT
T ss_pred             ECCCCCEEEEEc-CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CC
Confidence            987777776554 456777777765433222211 00111233333322           23444444566666663 23


Q ss_pred             CceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258        292 DDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI  370 (440)
Q Consensus       292 ~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v  370 (440)
                      +....+..-. ....+.+.          |++.++++-+..+.|+..++.......   .....-.....++|++.+..+
T Consensus       204 ~~~~~~~~h~~~v~~~~~s----------~~g~~l~sgs~dg~v~iwd~~~~~~~~---~~~~~~~~v~~v~~sp~~~~l  270 (343)
T 2xzm_R          204 QIRYTFKAHESNVNHLSIS----------PNGKYIATGGKDKKLLIWDILNLTYPQ---REFDAGSTINQIAFNPKLQWV  270 (343)
T ss_dssp             EEEEEEECCSSCEEEEEEC----------TTSSEEEEEETTCEEEEEESSCCSSCS---EEEECSSCEEEEEECSSSCEE
T ss_pred             ceeEEEcCccccceEEEEC----------CCCCEEEEEcCCCeEEEEECCCCcccc---eeecCCCcEEEEEECCCCCEE
Confidence            2222222222 23334332          343344444445788888874331111   111122346789999987655


Q ss_pred             EEEECCCCeEEEEecCCCCeEE--EEE-----------CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        371 YYAELTSYVIERRKMFGRGKEV--VID-----------TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       371 y~~d~~~~~I~r~~~~g~~~~~--~~~-----------~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      ..+  ..+.|+..++.......  .+.           .....+..||+.+.+..|+... ..++|.+.++.
T Consensus       271 a~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~Dg~v~~w~~~  339 (343)
T 2xzm_R          271 AVG--TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF-TDGVIRTFSFE  339 (343)
T ss_dssp             EEE--ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE-TTSEEEEEEEE
T ss_pred             EEE--CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec-CCceEEEEEEE
Confidence            433  35567767765422211  111           0113467899988787776654 46788888765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.23  E-value=3.6  Score=38.48  Aligned_cols=172  Identities=9%  Similarity=0.019  Sum_probs=90.6

Q ss_pred             CCcEEEe---ceEEEEec-CCceEEEEEcCC----CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC-CCCceeEEec
Q psy14258        144 THKIVYP---EAIYFCTH-YMEHCMIAIDLN----LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTH  214 (440)
Q Consensus       144 ~~~lY~~---~~I~~~~~-dg~~~~~~~~~~----~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d-G~~~~~l~~~  214 (440)
                      ++.||+.   +.+...+. +|+..-..-...    .......+++  .+.||+....   +.+...+.. |...-..-  
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~---g~l~~~d~~tG~~~w~~~--  215 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDN---GRVSAVLMEQGQMIWQQR--  215 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTT---TEEEEEETTTCCEEEEEE--
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCC---CEEEEEECCCCcEEEEEe--
Confidence            5667776   66777776 455433221110    0001233343  3667765433   467777663 43222111  


Q ss_pred             CccCc-------------eEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCC
Q psy14258        215 KIVYP-------------YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ  281 (440)
Q Consensus       215 ~~~~P-------------~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~  281 (440)
                       ...|             ....++  +++||+.. ..+.+..++........-..   ...+.++.+.++.||+... .+
T Consensus       216 -~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~-~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~~~~~l~~~~~-~g  287 (376)
T 3q7m_A          216 -ISQATGSTEIDRLSDVDTTPVVV--NGVVFALA-YNGNLTALDLRSGQIMWKRE---LGSVNDFIVDGNRIYLVDQ-ND  287 (376)
T ss_dssp             -CCC-----------CCCCCCEEE--TTEEEEEC-TTSCEEEEETTTCCEEEEEC---CCCEEEEEEETTEEEEEET-TC
T ss_pred             -cccCCCCcccccccccCCCcEEE--CCEEEEEe-cCcEEEEEECCCCcEEeecc---CCCCCCceEECCEEEEEcC-CC
Confidence             1111             112333  68888875 45688888874333322222   3346678888999999985 67


Q ss_pred             eEEEEeccCCCceEEEecCCC--CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC
Q psy14258        282 SIIRVNKFNSDDYETIANFSR--PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD  342 (440)
Q Consensus       282 ~i~~~~~~~g~~~~~~~~~~~--p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~  342 (440)
                      .|..++..+|+..-.......  .....+.           ++.|++.+. .+.++.++....
T Consensus       288 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-----------~~~l~v~~~-~g~l~~~d~~tG  338 (376)
T 3q7m_A          288 RVMALTIDGGVTLWTQSDLLHRLLTSPVLY-----------NGNLVVGDS-EGYLHWINVEDG  338 (376)
T ss_dssp             CEEEEETTTCCEEEEECTTTTSCCCCCEEE-----------TTEEEEECT-TSEEEEEETTTC
T ss_pred             eEEEEECCCCcEEEeecccCCCcccCCEEE-----------CCEEEEEeC-CCeEEEEECCCC
Confidence            899999888865432221111  1111111           356666654 267777776443

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.16  E-value=0.02  Score=47.53  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             CceeecccCCCC--CCCCCCcccCCCceEEc-cCCeeee
Q psy14258          9 TQCVDADECLID--GSCDQTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus         9 ~~C~d~~~C~~~--~~Cs~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      ..|.|++||..+  +.|+|.|.|.+++|+|. .+||.|.
T Consensus       112 y~~~d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~  150 (159)
T 1nzi_A          112 YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLH  150 (159)
T ss_dssp             EEEEECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEEC
T ss_pred             eecccCcccCCCCCCCCCCcccCcCCCEEEecCCCcEEC
Confidence            358899999963  68999999999999999 9999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.11  E-value=3.6  Score=38.04  Aligned_cols=277  Identities=9%  Similarity=-0.018  Sum_probs=145.5

Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceE--EEEE-cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE-
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHC--MIAI-DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM-  211 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~--~~~~-~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l-  211 (440)
                      |+.+.+..|.-+   +.|.+-++++...  .... ........++++.|...+|.-....   +.|...+.+....+.+ 
T Consensus        23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D---~~v~iw~~~~~~~~~~~   99 (345)
T 3fm0_A           23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD---ATTCIWKKNQDDFECVT   99 (345)
T ss_dssp             EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT---SCEEEEEECCC-EEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC---CcEEEEEccCCCeEEEE
Confidence            666655544444   6777777766542  2222 2334568899999965555555544   3555555554332222 


Q ss_pred             -EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEe
Q psy14258        212 -VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVN  287 (440)
Q Consensus       212 -~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~  287 (440)
                       +...-.....+++.+.+..|.-+. ..+.|...+++.... ..+.. .........+++..+ .++.+-...+.|...+
T Consensus       100 ~~~~h~~~v~~v~~sp~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~  178 (345)
T 3fm0_A          100 TLEGHENEVKSVAWAPSGNLLATCS-RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR  178 (345)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred             EccCCCCCceEEEEeCCCCEEEEEE-CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence             222234567899987766666554 456777777754432 22211 111233456666543 4444444566666555


Q ss_pred             ccCCCceE--EEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc-----------eeeeeec
Q psy14258        288 KFNSDDYE--TIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE-----------QAIMPIT  353 (440)
Q Consensus       288 ~~~g~~~~--~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~-----------~~~~~~~  353 (440)
                      ..+++...  .+.+-. ....+.+.          |++.++++-+..+.|+..+....+...           .....+.
T Consensus       179 ~~~~~~~~~~~~~~h~~~v~~l~~s----------p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T 3fm0_A          179 EEEDDWVCCATLEGHESTVWSLAFD----------PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS  248 (345)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred             ecCCCEEEEEEecCCCCceEEEEEC----------CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence            54443221  222211 23344333          333333333334666655532110100           0111222


Q ss_pred             C--CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC------eEEEEE---CCCCCeeeEEEecCCCcEEEEeCCCCe
Q psy14258        354 D--LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG------KEVVID---TGIYNVEGMAVDWMANNLYWTDAGIGT  422 (440)
Q Consensus       354 ~--~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~------~~~~~~---~~~~~~~glAvD~~~~~lYwtd~~~~~  422 (440)
                      +  -.....+++.+.++.+. +-...+.|+..+.+...      ......   ..-..+..+|+.+.+..+..+-...++
T Consensus       249 ~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          249 GFHSRTIYDIAWCQLTGALA-TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             SSCSSCEEEEEECTTTCCEE-EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             CCCCCcEEEEEEecCCCEEE-EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence            2  22456899998877554 44467777777765421      111111   233568889998877667777777788


Q ss_pred             EEEEEeCC
Q psy14258        423 INVAKISD  430 (440)
Q Consensus       423 I~~~~~~g  430 (440)
                      |.+-++..
T Consensus       328 v~~W~~~~  335 (345)
T 3fm0_A          328 VAFWKYQR  335 (345)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99988876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.95  E-value=4.3  Score=38.33  Aligned_cols=194  Identities=8%  Similarity=-0.012  Sum_probs=106.9

Q ss_pred             ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      ...+++.+.+..|..+. ..+.|...++..........+. ......+++..+ ...++-...+.|...+..+++....+
T Consensus       126 v~~v~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGA-EDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             EEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEccC-CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            56788987776666554 5677888887655443333321 334567777644 34445556778877787666554444


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCC-ceeEEeecCCccEEEEEEcCCCCCCceeeeee--------cCCCCceEEEEEcCCC
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKP-STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI--------TDLKRPSVIDYHEKEE  368 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~-~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~--------~~~~~p~~l~~d~~~~  368 (440)
                      ........+.+.          | ++.++++-+..+.|+..++... .   ....+        ..-....+++|++.++
T Consensus       204 ~~~~~v~~~~~~----------~~~~~~l~~~s~d~~v~iwd~~~~-~---~~~~~~~~~~~~~~h~~~v~~v~~~~~g~  269 (393)
T 1erj_A          204 SIEDGVTTVAVS----------PGDGKYIAAGSLDRAVRVWDSETG-F---LVERLDSENESGTGHKDSVYSVVFTRDGQ  269 (393)
T ss_dssp             ECSSCEEEEEEC----------STTCCEEEEEETTSCEEEEETTTC-C---EEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             EcCCCcEEEEEE----------CCCCCEEEEEcCCCcEEEEECCCC-c---EEEeecccccCCCCCCCCEEEEEECCCCC
Confidence            322233334333          2 3334444344477887776554 1   11111        1123456899999877


Q ss_pred             EEEEEECCCCeEEEEecCCCC------------eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        369 YIYYAELTSYVIERRKMFGRG------------KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       369 ~vy~~d~~~~~I~r~~~~g~~------------~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .|+ +-...++|...++....            ........-..+..+++...+..|. +-...++|.+.++..
T Consensus       270 ~l~-s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          270 SVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEE-EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTT
T ss_pred             EEE-EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCC
Confidence            664 44467788777765321            1112222334567788876555443 434456777777654

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=93.86  E-value=0.013  Score=47.83  Aligned_cols=38  Identities=34%  Similarity=0.650  Sum_probs=32.7

Q ss_pred             CCceeecccCCC-CCCCC--CCcccCCCceEEc-cCCeeeec
Q psy14258          8 KTQCVDADECLI-DGSCD--QTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         8 ~~~C~d~~~C~~-~~~Cs--~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +..|+|++||.. ...|.  +.|.|++++|+|. +.||.+..
T Consensus        90 ~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~  131 (143)
T 2bou_A           90 ENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH  131 (143)
T ss_dssp             GCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCT
T ss_pred             CCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCC
Confidence            468999999985 56887  5899999999999 99998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=93.86  E-value=4.6  Score=38.41  Aligned_cols=237  Identities=10%  Similarity=-0.031  Sum_probs=119.8

Q ss_pred             ccce-eeeecCCcEEEe----ceEEEEecCC---ce---EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258        135 DGTE-RFPMVTHKIVYP----EAIYFCTHYM---EH---CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL  203 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~----~~I~~~~~dg---~~---~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~  203 (440)
                      .+.. ++.+..+.++++    +.|.+-++..   ..   ..... .......+|++.|....|+.+...   +.|...++
T Consensus        65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vwd~  140 (437)
T 3gre_A           65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD---GQIIVLKV  140 (437)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT---SEEEEEEE
T ss_pred             ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC---CEEEEEEe
Confidence            4555 666623334445    6787777654   11   11111 134568899999855555554443   46666665


Q ss_pred             ----CCCCceeEEec-----------CccCceEEE--EeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCC-ccCceee
Q psy14258        204 ----DGTERFPMVTH-----------KIVYPYGVT--VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGF-PVQNLYD  265 (440)
Q Consensus       204 ----dG~~~~~l~~~-----------~~~~P~gl~--vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~-~~~~p~g  265 (440)
                          .|.....+...           .......+.  ..+ .+.++++-...+.|...++............ .......
T Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~  219 (437)
T 3gre_A          141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS  219 (437)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEE
T ss_pred             ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEE
Confidence                33322211100           001112222  222 2444444445678888887654443333321 1345677


Q ss_pred             eeEecC-EEEEEecCCCeEEEEeccCCCceEEEe-cCCC-CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC
Q psy14258        266 ITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIA-NFSR-PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD  342 (440)
Q Consensus       266 l~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~-~~~~-p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~  342 (440)
                      +++..+ .+..+-...+.|...+..+++....+. .... ...+. +++...     +++.++++-+..+.|+..++...
T Consensus       220 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~s-----~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          220 ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVE-VCQFYG-----KNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEE-ECTTTC-----TTEEEEEEESTTEEEEEEETTTT
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEE-eccccC-----CCccEEEEEcCCCcEEEEEcCCC
Confidence            887644 445555557778888876665544432 1111 12222 222222     34445555455577888887644


Q ss_pred             CCCceeeeeec---------------------------CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        343 GTTEQAIMPIT---------------------------DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       343 ~~~~~~~~~~~---------------------------~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                          .....+.                           .......++++  ++.++++-...+.|+.-++...
T Consensus       294 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          294 ----HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             ----EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCG
T ss_pred             ----cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCc
Confidence                1110000                           01124478888  3456677777888888887643

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=93.76  E-value=0.028  Score=52.53  Aligned_cols=38  Identities=24%  Similarity=0.596  Sum_probs=33.8

Q ss_pred             CCcee-ecccCCC--CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258          8 KTQCV-DADECLI--DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         8 ~~~C~-d~~~C~~--~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      ++.|+ |++||..  ++.|.+.|.|..++|.|. +.||.+..
T Consensus        36 g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~   77 (317)
T 3h5c_B           36 GSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGE   77 (317)
T ss_dssp             SSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCT
T ss_pred             CCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccccc
Confidence            56899 9999986  479999999999999999 99998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=93.59  E-value=4  Score=36.79  Aligned_cols=199  Identities=6%  Similarity=-0.069  Sum_probs=102.6

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeec-CCcEEEe----ceEEE
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMV-THKIVYP----EAIYF  155 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~-~~~lY~~----~~I~~  155 (440)
                      .+.+++|++.++.|.... ..+.|+..++........      ....+...-..+.. ++.+. .++++++    +.|.+
T Consensus        13 ~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCS-SDQHIKVFKLDKDTSNWE------LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             CEEEEEECSSSSEEEEEE-TTSEEEEEEECSSSCCEE------EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             ceeEEEEcCCCCEEEEee-CCCeEEEEECCCCCCcce------ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            389999998766665554 446676666653221100      00011122223343 44432 2445555    67888


Q ss_pred             EecCCc---------eEEEEEcCCCCCceEEEEcCC--CCeEEEEEcCCCCCcEEEEeCCCCCce-eEEe----------
Q psy14258        156 CTHYME---------HCMIAIDLNLSKPRGIALDPT--SGYMFFTKWGATRPMLERSLLDGTERF-PMVT----------  213 (440)
Q Consensus       156 ~~~dg~---------~~~~~~~~~~~~P~~iavd~~--~g~lywtd~~~~~~~I~r~~~dG~~~~-~l~~----------  213 (440)
                      .+++..         .....+........++++.|.  ..+|+.+...   +.|...++...... .+..          
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND---GILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---CEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC---CcEEEecCCChHHhccccccccccccccc
Confidence            888764         222333334567889999996  4445554443   57888886543211 1110          


Q ss_pred             --cCccCceEEEEeCC---CCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeeeEecC-----EEEEEecCCCe
Q psy14258        214 --HKIVYPYGVTVDFP---TKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVFEN-----NLFVTSWRNQS  282 (440)
Q Consensus       214 --~~~~~P~gl~vD~~---~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~~-----~ly~td~~~~~  282 (440)
                        ........+++.+.   ...|..+. ..+.+............+.. .........+++..+     .++.+-...+.
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence              11234566777765   45555544 33444333333333322322 111234567777655     56666666777


Q ss_pred             EEEEeccCC
Q psy14258        283 IIRVNKFNS  291 (440)
Q Consensus       283 i~~~~~~~g  291 (440)
                      |...+..++
T Consensus       242 i~iwd~~~~  250 (351)
T 3f3f_A          242 IRIFKITEK  250 (351)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEeCCCC
Confidence            776666544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=93.40  E-value=5.1  Score=37.46  Aligned_cols=198  Identities=13%  Similarity=0.099  Sum_probs=106.4

Q ss_pred             CceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceE
Q psy14258        218 YPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       218 ~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      ++..+++.+.+..|..+-.. .+.|..-+............  -....++++..+ .+..+- ..+.+..++..+++...
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~--~~~V~~v~fspdg~~l~s~-s~~~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET--RGEVKDLHFSTDGKVVAYI-TGSSLEVISTVTGSCIA  211 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSSEEEEE-CSSCEEEEETTTCCEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC--CCceEEEEEccCCceEEec-cceeEEEEEeccCccee
Confidence            45678888878888776543 34666666654333222222  234567887655 333332 34566667766665443


Q ss_pred             EEecCCC---CeEEEEeccCCCCCCCCCc-eeEEeecCCc---cEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCC
Q psy14258        296 TIANFSR---PFAIHIYHRQKQPDALKPS-TFLLYAKGKP---AIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKE  367 (440)
Q Consensus       296 ~~~~~~~---p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~---~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~  367 (440)
                      .......   ...+++.          |+ .+|+.+....   ..++..++............+.+ .....+++|.|.+
T Consensus       212 ~~~~~~~~~~v~~v~fs----------pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFI----------ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             EECCCCTTEEEEEEEEE----------ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             eeecCCCCCCEEEEEEc----------CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence            2222211   2233332          23 3333332211   13444554433000011122222 2345689999987


Q ss_pred             CEEEEEECCCCeEEEEecCCCCe-EEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        368 EYIYYAELTSYVIERRKMFGRGK-EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       368 ~~vy~~d~~~~~I~r~~~~g~~~-~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +.|..+ ...++|+-.++..... ..+....-..+..||+.+.++. ..+-+..++|.+.++..
T Consensus       282 ~~lasg-s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          282 ELAVLA-SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY-VASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CEEEEE-ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE-EEEEETTSEEEEEECCT
T ss_pred             CceEEE-cCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE-EEEEeCCCeEEEEEcCC
Confidence            765544 4678898888864322 2222334567899999987764 45556678999999853

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.30  E-value=9  Score=39.97  Aligned_cols=232  Identities=12%  Similarity=0.029  Sum_probs=120.9

Q ss_pred             CCCeEEEEEcCCC--CCcEEEEeC---CCC--CceeEEecC-------ccCceEEEEe-CCCCEEEEEeCCCC----cEE
Q psy14258        182 TSGYMFFTKWGAT--RPMLERSLL---DGT--ERFPMVTHK-------IVYPYGVTVD-FPTKHVYWVDTYLD----FID  242 (440)
Q Consensus       182 ~~g~lywtd~~~~--~~~I~r~~~---dG~--~~~~l~~~~-------~~~P~gl~vD-~~~~~ly~~d~~~~----~i~  242 (440)
                      ..+++||+-....  .+.+.|...   +|.  ..++++..+       ...-.+.++. +.+.+|.|+....+    .|+
T Consensus       125 ~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~  204 (751)
T 2xe4_A          125 YGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIE  204 (751)
T ss_dssp             ETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEE
T ss_pred             ECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEE
Confidence            4588999864332  245788877   665  556665432       1134567888 88888877655433    499


Q ss_pred             EEEccCC-CcEEEecCCccCc-eeeeeEe--cCEEEEEecCC----CeEEEEeccCCCce--EEEecCCCCeEEEEeccC
Q psy14258        243 RINYDGT-DRKTIRKGFPVQN-LYDITVF--ENNLFVTSWRN----QSIIRVNKFNSDDY--ETIANFSRPFAIHIYHRQ  312 (440)
Q Consensus       243 ~~~~dG~-~~~~i~~~~~~~~-p~gl~~~--~~~ly~td~~~----~~i~~~~~~~g~~~--~~~~~~~~p~~~~v~~~~  312 (440)
                      ..++++. ..  +...  +.. ..+++..  +..||++....    ..|++.+..++...  .+.......+.+.+.   
T Consensus       205 v~dl~~g~~~--l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~---  277 (751)
T 2xe4_A          205 FKRISDPSQT--IADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMY---  277 (751)
T ss_dssp             EEETTCTTCC--CCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEE---
T ss_pred             EEECCCCCEe--CCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEE---
Confidence            9999876 42  1110  111 1245554  34777765421    36777776554422  232222122222111   


Q ss_pred             CCCCCCCCceeEEeecC--CccEEEEEEcCCCCCCce-eeeeecCCCCc-eEEEEEcCCCEEEEEECC----CCeEEEEe
Q psy14258        313 KQPDALKPSTFLLYAKG--KPAIIKGLTFKRDGTTEQ-AIMPITDLKRP-SVIDYHEKEEYIYYAELT----SYVIERRK  384 (440)
Q Consensus       313 ~qp~~~~~~~~l~~~~~--~~~~I~~i~~~~~~~~~~-~~~~~~~~~~p-~~l~~d~~~~~vy~~d~~----~~~I~r~~  384 (440)
                      ..|    .+.+|++...  ....|+.+++++. .... ..........+ ..+++ ..++.+|+....    ...|++++
T Consensus       278 ~Sp----Dg~~l~~~~~~~~~~~l~~~d~~~~-~~~~~~~~l~~~~~~~~~s~~~-~~g~~l~~~t~~~~a~~~~L~~~d  351 (751)
T 2xe4_A          278 KAA----DTNTLCIGSQSPETAEVHLLDLRKG-NAHNTLEIVRPREKGVRYDVQM-HGTSHLVILTNEGGAVNHKLLIAP  351 (751)
T ss_dssp             ECT----TSSEEEEEEECSSCEEEEEEESSSC-TTCCCEEESSCCCTTCCEEEEE-ETTTEEEEEECTTTCTTCEEEEEE
T ss_pred             ECC----CCCEEEEEecCCCCceEEEEECCCC-CCCceeEEeecCCCCceEEEee-eeCCEEEEEeCCCCCCCcEEEEEc
Confidence            111    1245655432  2467888888764 1111 01111111122 22332 237788877543    45899999


Q ss_pred             cCC-CCeEE-EEECCCC-CeeeEEEecCCCcEEEEeC--CCCeEEEEEe
Q psy14258        385 MFG-RGKEV-VIDTGIY-NVEGMAVDWMANNLYWTDA--GIGTINVAKI  428 (440)
Q Consensus       385 ~~g-~~~~~-~~~~~~~-~~~glAvD~~~~~lYwtd~--~~~~I~~~~~  428 (440)
                      +++ ...+. ++..+-+ ...+++  +.++.||++-.  +...|.++++
T Consensus       352 ~~~~~~~~~~li~~~~~~~l~~~~--~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          352 RGQPSDWSHVLVDHSEDVFMESIA--VRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TTSTTCCCCEEECCCSSEEEEEEE--ECSSEEEEEEEETTEEEEEEEEC
T ss_pred             CCCcccceeeEECCCCCcEEEEEE--EECCEEEEEEEeCCEEEEEEEec
Confidence            874 23233 4443322 234444  45788888744  4456777775

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.25  E-value=5.1  Score=36.99  Aligned_cols=283  Identities=8%  Similarity=0.025  Sum_probs=140.1

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|++.++.|. +-...+.|+..++.......       ........-..... ++.+.++.|.-+   +.|.+-+
T Consensus        18 ~v~~l~~sp~g~~la-s~~~D~~i~iw~~~~~~~~~-------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~   89 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLA-SCGGDRRIRIWGTEGDSWIC-------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK   89 (345)
T ss_dssp             CEEEEEECTTSSCEE-EEETTSCEEEEEEETTEEEE-------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEECCCCCEEE-EEcCCCeEEEEEcCCCccee-------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence            388999998766554 44445666655554321100       00001112234555 666666555444   5677766


Q ss_pred             cCCceE--EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE---ecCccCceEEEEeCCCCEEE
Q psy14258        158 HYMEHC--MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV---THKIVYPYGVTVDFPTKHVY  232 (440)
Q Consensus       158 ~dg~~~--~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~---~~~~~~P~gl~vD~~~~~ly  232 (440)
                      .+....  ...+........++++.|. |.++.+-...  +.|...+++.......+   .........+++.+.+..|.
T Consensus        90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  166 (345)
T 3fm0_A           90 KNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRD--KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA  166 (345)
T ss_dssp             ECCC-EEEEEEECCCSSCEEEEEECTT-SSEEEEEETT--SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred             ccCCCeEEEEEccCCCCCceEEEEeCC-CCEEEEEECC--CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence            665432  2233334466889999995 5444443332  47777777654332222   22233467788887766666


Q ss_pred             EEeCCCCcEEEEEccCCCcEEE--ecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceE--------------
Q psy14258        233 WVDTYLDFIDRINYDGTDRKTI--RKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYE--------------  295 (440)
Q Consensus       233 ~~d~~~~~i~~~~~dG~~~~~i--~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~--------------  295 (440)
                      .+. ..+.|...+........+  ..+ ......++++..+ ..+.+-...+.|...+........              
T Consensus       167 s~s-~d~~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          167 SAS-YDDTVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             EEE-TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             EEe-CCCcEEEEEecCCCEEEEEEecC-CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence            554 455676666654432221  122 1334567777654 444444455665544432211100              


Q ss_pred             -EEecCC--CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc--eeeee--e--cCCCCceEEEEEcC
Q psy14258        296 -TIANFS--RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE--QAIMP--I--TDLKRPSVIDYHEK  366 (440)
Q Consensus       296 -~~~~~~--~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~--~~~~~--~--~~~~~p~~l~~d~~  366 (440)
                       .+....  ....+...          +.+.++++-+..+.|+..+.+......  .....  .  ..-....+++|.|.
T Consensus       245 ~~~~~~h~~~v~~v~~~----------~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  314 (345)
T 3fm0_A          245 CTLSGFHSRTIYDIAWC----------QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK  314 (345)
T ss_dssp             EEECSSCSSCEEEEEEC----------TTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS
T ss_pred             EEecCCCCCcEEEEEEe----------cCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCC
Confidence             011100  11122111          222223333334677777765441111  11111  1  11234568999987


Q ss_pred             CCEEEEEECCCCeEEEEecCC
Q psy14258        367 EEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       367 ~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      +..++.+-...++|..-++..
T Consensus       315 ~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          315 EPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             STTEEEEEETTSCEEEEEECC
T ss_pred             CceEEEEcCCCCcEEEEEecC
Confidence            755666666677777666654

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=93.16  E-value=0.053  Score=44.13  Aligned_cols=38  Identities=32%  Similarity=0.516  Sum_probs=31.8

Q ss_pred             CCCceeecccCCCC--CCCC--CCcccCCCceEEc-cCCeeee
Q psy14258          7 NKTQCVDADECLID--GSCD--QTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus         7 ~~~~C~d~~~C~~~--~~Cs--~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      +++.|+|++||...  ..|.  ..|.+++++|+|. .+||.+.
T Consensus        37 ~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~   79 (143)
T 2bou_A           37 PMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPV   79 (143)
T ss_dssp             TTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEET
T ss_pred             CCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccC
Confidence            46889999999974  3687  4899999999999 9999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=92.97  E-value=5  Score=36.12  Aligned_cols=248  Identities=9%  Similarity=-0.028  Sum_probs=125.6

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce-eEE---ecCccCceEEEEeCC--CCEEEEEeCCCCcEEE
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF-PMV---THKIVYPYGVTVDFP--TKHVYWVDTYLDFIDR  243 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~-~l~---~~~~~~P~gl~vD~~--~~~ly~~d~~~~~i~~  243 (440)
                      .......|+++|...+|......   +.|...+++..... .+.   ...-.....+++.+.  +..|+.+ ...+.|..
T Consensus        10 H~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~-~~dg~v~v   85 (351)
T 3f3f_A           10 HDDLVHDVVYDFYGRHVATCSSD---QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA-SYDKTVKL   85 (351)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETT---SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE-ETTSCEEE
T ss_pred             cccceeEEEEcCCCCEEEEeeCC---CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE-cCCCeEEE
Confidence            44567899999954455544433   57777777643221 221   222345678888764  4444444 45677877


Q ss_pred             EEccCCCc-------EEEec-CCccCceeeeeEec---CEEEEEecCCCeEEEEeccCCCceEEEe------cC------
Q psy14258        244 INYDGTDR-------KTIRK-GFPVQNLYDITVFE---NNLFVTSWRNQSIIRVNKFNSDDYETIA------NF------  300 (440)
Q Consensus       244 ~~~dG~~~-------~~i~~-~~~~~~p~gl~~~~---~~ly~td~~~~~i~~~~~~~g~~~~~~~------~~------  300 (440)
                      .++.....       ..+.. .........+++..   +.++++-..++.|...+..+++....+.      ..      
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            77765321       22211 11133456777764   3344444456777777766554322110      00      


Q ss_pred             --CCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCC---EEEEEE
Q psy14258        301 --SRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEE---YIYYAE  374 (440)
Q Consensus       301 --~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~---~vy~~d  374 (440)
                        .....+... |...     ....|+++.. .+.+........ .. .....+.+ -....++++.+.+.   .++.+-
T Consensus       166 ~~~~~~~~~~~-p~~~-----~~~~l~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          166 HLQSDFCLSWC-PSRF-----SPEKLAVSAL-EQAIIYQRGKDG-KL-HVAAKLPGHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             CSCCCEEEEEC-CCSS-----SCCEEEEEET-TEEEEEEECTTS-CE-EEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             cccceeEEEec-cCCC-----CCcEEEEecC-CCcEEEEccCCC-ce-eeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence              011112111 1100     0234444433 244422222221 11 11222222 22456899998762   455665


Q ss_pred             CCCCeEEEEecCCCC--------------------------------------------eEEE--EECCCCCeeeEEEec
Q psy14258        375 LTSYVIERRKMFGRG--------------------------------------------KEVV--IDTGIYNVEGMAVDW  408 (440)
Q Consensus       375 ~~~~~I~r~~~~g~~--------------------------------------------~~~~--~~~~~~~~~glAvD~  408 (440)
                      ...+.|+..++....                                            .+.+  ....-..+..|++.+
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence            567777777765421                                            0111  112335688999998


Q ss_pred             CCCcEEEEeCCCCeEEEEEeCCC
Q psy14258        409 MANNLYWTDAGIGTINVAKISDF  431 (440)
Q Consensus       409 ~~~~lYwtd~~~~~I~~~~~~g~  431 (440)
                      .++.|.-+. ..+.|.+.+++..
T Consensus       317 ~~~~l~s~~-~dg~v~iw~~~~~  338 (351)
T 3f3f_A          317 TGTILSSAG-DDGKVRLWKATYS  338 (351)
T ss_dssp             SSCCEEEEE-TTSCEEEEEECTT
T ss_pred             CCCEEEEec-CCCcEEEEecCcC
Confidence            776555554 4678999998753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=92.92  E-value=11  Score=40.13  Aligned_cols=195  Identities=8%  Similarity=0.000  Sum_probs=109.4

Q ss_pred             CceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       218 ~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      ....+++++.+..|..+. ..+.|...+..+.........  -.....+++..+.+..+-...+.|...+..+++....+
T Consensus        19 ~V~~lafspdg~~lAsgs-~Dg~I~lw~~~~~~~~~~~~~--~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~   95 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIAT-VTGEVHIYGQQQVEVVIKLED--RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTV   95 (902)
T ss_dssp             CEEEEEEETTTTEEEEEE-TTSEEEEECSTTCEEEEECSS--CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred             CcEEEEECCCCCEEEEEe-CCCEEEEEeCCCcEEEEEcCC--CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEE
Confidence            467889998777766654 456777776655433222211  22346777765654444445777877787766655444


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeee---------eecCCCCceEEEEEcCC
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIM---------PITDLKRPSVIDYHEKE  367 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~---------~~~~~~~p~~l~~d~~~  367 (440)
                      ........+.+.          |+ .+|+.+.. .+.|+..+++.. ......+         +........+++|+|.+
T Consensus        96 ~~~~~V~~v~~s----------p~g~~l~sgs~-dg~V~lwd~~~~-~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           96 FVPGKITSIDTD----------ASLDWMLIGLQ-NGSMIVYDIDRD-QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD  163 (902)
T ss_dssp             ECSSCEEEEECC----------TTCSEEEEEET-TSCEEEEETTTT-EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred             cCCCCEEEEEEC----------CCCCEEEEEcC-CCcEEEEECCCC-ccccceeccccccccccccCCCCeEEEEEccCC
Confidence            321122233222          33 44555433 478888888765 1100000         01112345689999976


Q ss_pred             CEEEEEECCCCeEEEEecCCCCeEEEEECC------------------CCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        368 EYIYYAELTSYVIERRKMFGRGKEVVIDTG------------------IYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       368 ~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~------------------~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      +.+..+-...+.| --++........+...                  -..+..+++.+.+. +..+-...++|.+.++.
T Consensus       164 ~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          164 IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETT
T ss_pred             CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECC
Confidence            5555666677788 7777654322222211                  13478899987655 55555556788888874

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=92.63  E-value=0.053  Score=42.25  Aligned_cols=38  Identities=16%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             CCceeec---ccCCC-CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258          8 KTQCVDA---DECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         8 ~~~C~d~---~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +..|++.   ++|.. ++.|.+.|.|+.++|+|. +.||.+..
T Consensus        45 G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~   87 (114)
T 1aut_L           45 GRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGD   87 (114)
T ss_dssp             STTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECT
T ss_pred             CCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECC
Confidence            3458865   46984 678999999999999999 99999754

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=92.61  E-value=0.061  Score=39.47  Aligned_cols=33  Identities=36%  Similarity=0.704  Sum_probs=27.7

Q ss_pred             eecccCCC-CCCCCC-CcccCCCceEEc-cCCeeee
Q psy14258         12 VDADECLI-DGSCDQ-TCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        12 ~d~~~C~~-~~~Cs~-~C~n~~~~~~C~-~~g~~l~   44 (440)
                      +|+|||.. +..|.+ .|.|++++|+|. ++||.+.
T Consensus         1 ~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~   36 (86)
T 1lmj_A            1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESG   36 (86)
T ss_dssp             CCCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEEC
T ss_pred             CccccccCCCCCCCCCEEECCCCCEEeeCCCCcCcc
Confidence            37899985 456876 899999999999 9999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=92.51  E-value=7.6  Score=37.05  Aligned_cols=267  Identities=7%  Similarity=-0.059  Sum_probs=139.5

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccceeeeecCCcEEEe---ceEEEEecC
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYP---EAIYFCTHY  159 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~avD~~~~~lY~~---~~I~~~~~d  159 (440)
                      +.++++|  ++. .++-...+.|+..++.....  .        ..+...-..+. ++.+.++.|+.+   +.|.+.++.
T Consensus       136 v~~~~~d--~~~-l~~g~~dg~i~iwd~~~~~~--~--------~~~~~h~~~v~-~l~~~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          136 VYCLQYD--DQK-IVSGLRDNTIKIWDKNTLEC--K--------RILTGHTGSVL-CLQYDERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             EEEEECC--SSE-EEEEESSSCEEEEESSSCCE--E--------EEECCCSSCEE-EEECCSSEEEEEETTSCEEEEESS
T ss_pred             EEEEEEC--CCE-EEEEeCCCeEEEEeCCCCeE--E--------EEEcCCCCcEE-EEEECCCEEEEEcCCCeEEEEECC
Confidence            6677764  344 44444556776665542211  0        01111111122 666644434333   689998887


Q ss_pred             CceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCcee---EEecCccCceEEEEeCCCCEEEEEeC
Q psy14258        160 MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP---MVTHKIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       160 g~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~---l~~~~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      .......+........+++.++  +.|+.....   +.|...++.......   ...........+++|  +..|+.+. 
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-  273 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKD---RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS-  273 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCT--TEEEEEETT---SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE-
T ss_pred             CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCC---CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCEEEEEe-
Confidence            6554444444445677777764  555555543   578888886554332   222223345566764  56666654 


Q ss_pred             CCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCC
Q psy14258        237 YLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQP  315 (440)
Q Consensus       237 ~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp  315 (440)
                      ..+.|...++..........+. ......+++.++.++.. ..++.|...+..+++....+..-. ....+.+.      
T Consensus       274 ~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~------  345 (435)
T 1p22_A          274 GDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYRDRLVVSG-SSDNTIRLWDIECGACLRVLEGHEELVRCIRFD------  345 (435)
T ss_dssp             TTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTEEEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEECC------
T ss_pred             CCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeCCCEEEEE-eCCCeEEEEECCCCCEEEEEeCCcCcEEEEEec------
Confidence            4678888887654433333321 23456677766555544 457788888887776665554322 22333331      


Q ss_pred             CCCCCceeEEeecCCccEEEEEEcCCCCCCc-----eeeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        316 DALKPSTFLLYAKGKPAIIKGLTFKRDGTTE-----QAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       316 ~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~-----~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                           ..+|+.+ +..+.|+..++.......     .....+. .-....++++|  +. .+++-...++|..-++...
T Consensus       346 -----~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          346 -----NKRIVSG-AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF-QIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             -----SSEEEEE-ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SS-CEEECCSSSEEEEEC----
T ss_pred             -----CCEEEEE-eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC--CC-EEEEEeCCCEEEEEECCCC
Confidence                 2334443 334788888875431110     0112222 22345578884  34 4456556888888888754

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=92.01  E-value=0.038  Score=47.50  Aligned_cols=38  Identities=24%  Similarity=0.608  Sum_probs=27.2

Q ss_pred             CCceee-c-ccCCC-CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258          8 KTQCVD-A-DECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         8 ~~~C~d-~-~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      ++.|++ + ++|.. ++.|.+.|.+..++|.|. +.||.+..
T Consensus        73 G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~  114 (195)
T 1nfu_B           73 GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD  114 (195)
T ss_dssp             --------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECT
T ss_pred             eccccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCC
Confidence            567986 6 89985 578999999999999999 99999754

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=91.99  E-value=1.8  Score=43.83  Aligned_cols=67  Identities=16%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCCC-------------------CCcEEEEeCCCCCce-------eEEe----------
Q psy14258        170 NLSKPRGIALDPTSGYMFFTKWGAT-------------------RPMLERSLLDGTERF-------PMVT----------  213 (440)
Q Consensus       170 ~~~~P~~iavd~~~g~lywtd~~~~-------------------~~~I~r~~~dG~~~~-------~l~~----------  213 (440)
                      .+..|++|+++|.+|.+|++-....                   .+.|+|...++....       .++.          
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            5678999999999999999964321                   257999887643221       1110          


Q ss_pred             -----------cCccCceEEEEeCCCCEEEEEeCC
Q psy14258        214 -----------HKIVYPYGVTVDFPTKHVYWVDTY  237 (440)
Q Consensus       214 -----------~~~~~P~gl~vD~~~~~ly~~d~~  237 (440)
                                 ..+..|-.|++|+ .++|+++...
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg  495 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDG  495 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECC
T ss_pred             ccccccccCCCCCccCCcceEECC-CCCEEEEecC
Confidence                       1256799999995 5668887643

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=91.97  E-value=0.076  Score=39.08  Aligned_cols=34  Identities=26%  Similarity=0.608  Sum_probs=27.5

Q ss_pred             eecccCCCCC-CC-CCCcccCCCceEEc-cCCeeeec
Q psy14258         12 VDADECLIDG-SC-DQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~~~~-~C-s~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +|++||.... .| .+.|.+++++|+|. ++||.+.+
T Consensus         1 ~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~   37 (87)
T 1z6c_A            1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNL   37 (87)
T ss_dssp             CCSCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEET
T ss_pred             CccccccCCCCCCCCCEeECCCCCEEEECCCCceECC
Confidence            3789998643 48 55899999999999 99998753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=91.90  E-value=6.6  Score=35.05  Aligned_cols=271  Identities=7%  Similarity=-0.032  Sum_probs=141.7

Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceEEEEEc--CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHCMIAID--LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT  213 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~--~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~  213 (440)
                      .+||-.+++.-+   +.|.+-+++...+..++.  .......++++.|...+|.-....   +.|...++..........
T Consensus        30 ~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D---g~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           30 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS---AEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             CEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC---CcEEEeecCCceeEEEec
Confidence            688887775544   788888887555443333  223457899999954444433333   577777776543322222


Q ss_pred             cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE-EecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCC
Q psy14258        214 HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT-IRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNS  291 (440)
Q Consensus       214 ~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~-i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g  291 (440)
                      ..-.....+..+  ...|..+. ..+.+............ ...+ .......+++..+ ....+-...+.|...+..++
T Consensus       107 ~h~~~~~~~~~~--~~~l~s~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          107 SHSARVGSLSWN--SYILSSGS-RSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEE-TTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             CccceEEEeecC--CCEEEEEe-cCCceEeeecCCCceeEEEEcC-ccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            222223333332  44444333 34444444443332222 1122 1233444554433 44455555677777776655


Q ss_pred             CceE----EEecCCCC-eEEEEeccCCCCCCCCCceeEE-eecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc
Q psy14258        292 DDYE----TIANFSRP-FAIHIYHRQKQPDALKPSTFLL-YAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE  365 (440)
Q Consensus       292 ~~~~----~~~~~~~p-~~~~v~~~~~qp~~~~~~~~l~-~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~  365 (440)
                      +...    .......+ ..+... +..       ...+. .+....+.|+..+....    ..............+.+.+
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~-~~~-------~~~~~~~~~~~~~~i~lwd~~~~----~~~~~~~~~~~v~~~~~~~  250 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWC-PWQ-------SNVLATGGGTSDRHIRIWNVCSG----ACLSAVDAHSQVCSILWSP  250 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEEC-TTS-------TTEEEEEECTTTCEEEEEETTTC----CEEEEEECSSCEEEEEEET
T ss_pred             cccccceeeecccCCceEEEEec-CCC-------CcEEEEEecCCCCEEEEEecccc----cccccccceeeeeeeeecc
Confidence            4322    11111111 122211 111       12232 33333466766665544    2222223334567888999


Q ss_pred             CCCEEEEEEC-CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        366 KEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       366 ~~~~vy~~d~-~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      .++.++.+.. ..+.|+..++........+...-+.+..|++.+.+..|. |-...++|.+-++.
T Consensus       251 ~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~-S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAAADETLRLWRCF  314 (318)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEETTTEEEEECCS
T ss_pred             cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEecCCeEEEEECC
Confidence            9998887753 578898888875444333343456789999988666554 44445677776653

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=91.58  E-value=0.046  Score=43.98  Aligned_cols=38  Identities=24%  Similarity=0.608  Sum_probs=26.7

Q ss_pred             CCceee-c-ccCCC-CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258          8 KTQCVD-A-DECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         8 ~~~C~d-~-~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      ++.|++ + ++|.. ++.|.+.|.+.+++|+|. +.||.+..
T Consensus        73 G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~  114 (134)
T 2vh0_B           73 GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD  114 (134)
T ss_dssp             --------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECT
T ss_pred             CCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECC
Confidence            567987 6 88985 468999999999999999 99998753

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=91.23  E-value=3  Score=42.16  Aligned_cols=104  Identities=9%  Similarity=0.019  Sum_probs=65.5

Q ss_pred             ccccccce-eeeecCCcEEEe-------------------------ceEEEEecCCce------E-EEEE-c--------
Q psy14258        131 RSLLDGTE-RFPMVTHKIVYP-------------------------EAIYFCTHYMEH------C-MIAI-D--------  168 (440)
Q Consensus       131 ~~~~~p~~-avD~~~~~lY~~-------------------------~~I~~~~~dg~~------~-~~~~-~--------  168 (440)
                      ..+..|++ ++++.++.+|++                         ++|.+...++..      . ..++ .        
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            45788999 999999999998                         147777654321      0 1111 1        


Q ss_pred             ------------CCCCCceEEEEcCCCCeEEEEEcCCC----------CCcEEEEeCCCCCceeEEecC-ccCceEEEEe
Q psy14258        169 ------------LNLSKPRGIALDPTSGYMFFTKWGAT----------RPMLERSLLDGTERFPMVTHK-IVYPYGVTVD  225 (440)
Q Consensus       169 ------------~~~~~P~~iavd~~~g~lywtd~~~~----------~~~I~r~~~dG~~~~~l~~~~-~~~P~gl~vD  225 (440)
                                  ..+..|-.|++|| .|.||+.+-+..          +..++....+-.....++... -.-..|+++.
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fs  539 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS  539 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred             cccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeEC
Confidence                        1367899999999 688988875431          124555555433333333332 2346788888


Q ss_pred             CCCCEEEEEe
Q psy14258        226 FPTKHVYWVD  235 (440)
Q Consensus       226 ~~~~~ly~~d  235 (440)
                      +....||+.-
T Consensus       540 pDg~tlfvni  549 (592)
T 3zwu_A          540 PDQKTLFVGI  549 (592)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            7777777753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=91.20  E-value=18  Score=38.62  Aligned_cols=192  Identities=8%  Similarity=0.004  Sum_probs=104.8

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEec
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTH  158 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~  158 (440)
                      +.+++|++..+.|..... .+.|+.......  +..         .....-..... ++.+ ++.|.-+   +.|.+-++
T Consensus        20 V~~lafspdg~~lAsgs~-Dg~I~lw~~~~~--~~~---------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~   86 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATV-TGEVHIYGQQQV--EVV---------IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL   86 (902)
T ss_dssp             EEEEEEETTTTEEEEEET-TSEEEEECSTTC--EEE---------EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred             cEEEEECCCCCEEEEEeC-CCEEEEEeCCCc--EEE---------EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence            899999998776655554 466654433221  110         01112223455 6666 4423333   68888888


Q ss_pred             CCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE-----------ecCccCceEEEEeCC
Q psy14258        159 YMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV-----------THKIVYPYGVTVDFP  227 (440)
Q Consensus       159 dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~-----------~~~~~~P~gl~vD~~  227 (440)
                      +...+...+. .-.....++++|...+|+.....   +.|...++++.......           .........+++++.
T Consensus        87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~d---g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           87 YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQN---GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETT---SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCC---CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            7544332222 22568899999977777776654   58888888765432111           011234678888876


Q ss_pred             CCEEEEEeCCCCcEEEEEccCCCcEEEecCC-----------------ccCceeeeeEecC-EEEEEecCCCeEEEEecc
Q psy14258        228 TKHVYWVDTYLDFIDRINYDGTDRKTIRKGF-----------------PVQNLYDITVFEN-NLFVTSWRNQSIIRVNKF  289 (440)
Q Consensus       228 ~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~-----------------~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~  289 (440)
                      +..++.+-...+.| .-++............                 .......+++..+ ..+.+-..++.|...+..
T Consensus       163 ~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          163 DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            55555555556677 7776544332222210                 0122456666544 444444455666666654


Q ss_pred             CCC
Q psy14258        290 NSD  292 (440)
Q Consensus       290 ~g~  292 (440)
                      +++
T Consensus       242 ~g~  244 (902)
T 2oaj_A          242 SGH  244 (902)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            443

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=90.85  E-value=0.082  Score=45.12  Aligned_cols=44  Identities=18%  Similarity=0.474  Sum_probs=35.8

Q ss_pred             ceecCCCCceeecccCCC---CCCCCC--CcccCC-----CceEEc-cCCeeeec
Q psy14258          2 TFRGPNKTQCVDADECLI---DGSCDQ--TCTNTH-----LSYTYT-DEGFSFQG   45 (440)
Q Consensus         2 ~~~~~~~~~C~d~~~C~~---~~~Cs~--~C~n~~-----~~~~C~-~~g~~l~~   45 (440)
                      ||.+.++.+|+++++|..   ...|.+  .|.+..     ++|+|. ..||.+..
T Consensus        32 G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~   86 (186)
T 1z1y_A           32 GLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE   86 (186)
T ss_dssp             TEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET
T ss_pred             CCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC
Confidence            566556678999999994   467875  799988     899999 99998753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=90.46  E-value=11  Score=34.91  Aligned_cols=234  Identities=10%  Similarity=-0.021  Sum_probs=122.2

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR  251 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~  251 (440)
                      .....+++.|. |.++.+-..   ..+...+++..  +.+..........+++.+..+.+.++-...+.|..-+......
T Consensus        20 ~~V~~v~fs~d-g~~la~g~~---~~~~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~   93 (355)
T 3vu4_A           20 NPVTDYEFNQD-QSCLILSTL---KSFEIYNVHPV--AHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD   93 (355)
T ss_dssp             CCCCEEEECTT-SSEEEEECS---SEEEEEEETTE--EEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred             CceEEEEECCC-CCEEEEEcC---CEEEEEecCCc--ceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence            44667777774 444433322   13434443321  1111111112334555555666655555555676666543222


Q ss_pred             EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCC-CceEEEecCCCCeEEEEeccCCCCCCCCCceeEEee-cC
Q psy14258        252 KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNS-DDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYA-KG  329 (440)
Q Consensus       252 ~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g-~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~-~~  329 (440)
                      ......  -....++++..+.++.+.  .+.|...+..++ +....+..   |.++..+.+          .+|.++ ..
T Consensus        94 ~~~~~~--~~~v~~v~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~----------~~la~~sg~  156 (355)
T 3vu4_A           94 VSRIKV--DAPVKDLFLSREFIVVSY--GDVISVFKFGNPWKRITDDIR---FGGVCEFSN----------GLLVYSNEF  156 (355)
T ss_dssp             EEEEEC--SSCEEEEEECSSEEEEEE--TTEEEEEESSTTCCBSSCCEE---EEEEEEEET----------TEEEEEESS
T ss_pred             EEEEEC--CCceEEEEEcCCEEEEEE--cCEEEEEECCCCceeeEEecc---CCceEEEEc----------cEEEEeCCC
Confidence            111121  224567777777666654  455666665544 32222222   455554432          345554 34


Q ss_pred             CccEEEEEEcCCCCC-----Cce------e-eeeecC-CCCceEEEEEcCCCEEEEEECCCCe-EEEEecCCCCeEEEEE
Q psy14258        330 KPAIIKGLTFKRDGT-----TEQ------A-IMPITD-LKRPSVIDYHEKEEYIYYAELTSYV-IERRKMFGRGKEVVID  395 (440)
Q Consensus       330 ~~~~I~~i~~~~~~~-----~~~------~-~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~-I~r~~~~g~~~~~~~~  395 (440)
                      ..+.|+..++.....     ...      . ...+.+ -....+++|++.+..+ .+-...++ |..-++........+.
T Consensus       157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l-~s~s~d~~~v~iwd~~~~~~~~~~~  235 (355)
T 3vu4_A          157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV-ATCSQDGTIIRVFKTEDGVLVREFR  235 (355)
T ss_dssp             CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE-EEEETTCSEEEEEETTTCCEEEEEE
T ss_pred             cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE-EEEeCCCCEEEEEECCCCcEEEEEE
Confidence            457888888765410     000      0 111222 2356799999976654 55556777 8888887543333333


Q ss_pred             C--CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        396 T--GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       396 ~--~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      .  .-..+..+++.+.+..|..+ ...++|.+.++..
T Consensus       236 ~g~h~~~v~~~~~s~~~~~l~s~-s~d~~v~iw~~~~  271 (355)
T 3vu4_A          236 RGLDRADVVDMKWSTDGSKLAVV-SDKWTLHVFEIFN  271 (355)
T ss_dssp             CTTCCSCEEEEEECTTSCEEEEE-ETTCEEEEEESSC
T ss_pred             cCCCCCcEEEEEECCCCCEEEEE-ECCCEEEEEEccC
Confidence            2  34678999999876655544 4568999999864

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=90.46  E-value=0.11  Score=36.67  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             eecccCCC-CCCCCC--CcccCCCceEEc--cCCeeee
Q psy14258         12 VDADECLI-DGSCDQ--TCTNTHLSYTYT--DEGFSFQ   44 (440)
Q Consensus        12 ~d~~~C~~-~~~Cs~--~C~n~~~~~~C~--~~g~~l~   44 (440)
                      +|+|||.. ...|..  .|.|++++|.|.  ..||...
T Consensus         1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~   38 (71)
T 2kl7_A            1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND   38 (71)
T ss_dssp             CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred             CccccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence            47899985 457854  799999999998  5677653

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=90.39  E-value=0.12  Score=40.56  Aligned_cols=33  Identities=27%  Similarity=0.575  Sum_probs=28.5

Q ss_pred             eecccCCCCCCCCCCcccC-CCceEEc-cCCeeeec
Q psy14258         12 VDADECLIDGSCDQTCTNT-HLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~~~~~Cs~~C~n~-~~~~~C~-~~g~~l~~   45 (440)
                      +|+|||. ...|.+.|.+. +++|+|. ++||.+..
T Consensus         2 ~dideC~-~~pC~~~C~~~~~g~y~C~C~~Gy~g~~   36 (118)
T 1dx5_I            2 EPVDPCF-RANCEYQCQPLDQTSYLCVCAEGFAPIP   36 (118)
T ss_dssp             CCCCGGG-GCCCSSEEEECSSSCEEEECCTTEEEET
T ss_pred             CccccCC-CCCCCCCCCCCCCCCEEeECCCCccccC
Confidence            4789996 47899999999 9999999 99998754

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=90.22  E-value=0.097  Score=43.53  Aligned_cols=34  Identities=32%  Similarity=0.607  Sum_probs=28.3

Q ss_pred             eecccCCCCCCC-CCCcccCCCceEEc-cCCeeeec
Q psy14258         12 VDADECLIDGSC-DQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~~~~~C-s~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +|+|||.....| .+.|.|++++|+|. ++||.+.+
T Consensus         1 ~dideC~~~~~C~~~~C~n~~gsy~C~C~~Gy~~~~   36 (162)
T 1uzk_A            1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP   36 (162)
T ss_dssp             CCCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECT
T ss_pred             CccccCCCCCCCCCCEeECCCCCEEEeCCCCCeECC
Confidence            478999865677 46899999999999 99999753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=89.92  E-value=14  Score=35.45  Aligned_cols=138  Identities=9%  Similarity=-0.085  Sum_probs=82.0

Q ss_pred             ccce-eeeecCCcEEE---e----ceEEEEecCCc------eE-----EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCC
Q psy14258        135 DGTE-RFPMVTHKIVY---P----EAIYFCTHYME------HC-----MIAIDLNLSKPRGIALDPTSGYMFFTKWGATR  195 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~---~----~~I~~~~~dg~------~~-----~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~  195 (440)
                      .+.. ++.+.++.|++   +    +.|.+.++...      ..     ..+.......+.+++..|..+.++.+-...  
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D--  171 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD--  171 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT--
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC--
Confidence            3666 77777877876   4    57777776432      10     111111235688999999767777665443  


Q ss_pred             CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccC-----ceeeeeEec
Q psy14258        196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQ-----NLYDITVFE  270 (440)
Q Consensus       196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~-----~p~gl~~~~  270 (440)
                      +.|...++............-..+..+++.+.+..|+.+. ..+.|...+..+.....+.......     ...+++..+
T Consensus       172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIG  250 (434)
T ss_dssp             SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred             CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEec
Confidence            5788877765422111111134678999998877777765 5678888888865444443221111     345666666


Q ss_pred             CEEEE
Q psy14258        271 NNLFV  275 (440)
Q Consensus       271 ~~ly~  275 (440)
                      +..|.
T Consensus       251 ~~~~l  255 (434)
T 2oit_A          251 TYVFA  255 (434)
T ss_dssp             TTEEE
T ss_pred             CceEE
Confidence            64444

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=89.65  E-value=0.16  Score=40.74  Aligned_cols=34  Identities=29%  Similarity=0.626  Sum_probs=28.3

Q ss_pred             ceeecccCCC-CCCCCC--CcccCCCceEEc-cCCeee
Q psy14258         10 QCVDADECLI-DGSCDQ--TCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus        10 ~C~d~~~C~~-~~~Cs~--~C~n~~~~~~C~-~~g~~l   43 (440)
                      +|+|++||.. ...|.+  .|.+..++|+|. ++||..
T Consensus         1 Sc~dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G   38 (135)
T 2vj3_A            1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG   38 (135)
T ss_dssp             --CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEES
T ss_pred             CCcccccccCCCCCCCCCCEeECCCCCEEEECCCCCcC
Confidence            5899999985 468987  799999999999 999975

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=89.21  E-value=0.16  Score=41.22  Aligned_cols=38  Identities=24%  Similarity=0.571  Sum_probs=31.0

Q ss_pred             CCceee-cccC---C-CCCCCCCCcccCCC-ceEEc-cCCeeeec
Q psy14258          8 KTQCVD-ADEC---L-IDGSCDQTCTNTHL-SYTYT-DEGFSFQG   45 (440)
Q Consensus         8 ~~~C~d-~~~C---~-~~~~Cs~~C~n~~~-~~~C~-~~g~~l~~   45 (440)
                      ++.|++ +++|   . .++.|+|.|.++.+ +|+|. +.||.+..
T Consensus        78 G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~  122 (142)
T 2c4f_L           78 GRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA  122 (142)
T ss_dssp             STTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECT
T ss_pred             CCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECC
Confidence            567986 6775   3 36789999999999 99999 99998753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=89.19  E-value=20  Score=36.02  Aligned_cols=67  Identities=6%  Similarity=-0.069  Sum_probs=43.6

Q ss_pred             CCEEEEEeCCCCcEEEEEc--cCCCcEEEecCCc---c------CceeeeeEecCEEEEEecCCCeEEEEeccCCCceE
Q psy14258        228 TKHVYWVDTYLDFIDRINY--DGTDRKTIRKGFP---V------QNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       228 ~~~ly~~d~~~~~i~~~~~--dG~~~~~i~~~~~---~------~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      +++||++....+.+..++.  +|..+-.......   .      ....++++.++.||+... .+.|+.++..+|+..=
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-NGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-CCEEEEEECCCCCEEE
Confidence            7788888653567888887  4544333221110   0      012467889999999864 6789999998887654

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=88.88  E-value=0.3  Score=32.32  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=24.6

Q ss_pred             Ccee-ecccCCCCCCCCC--Cc-----ccCCCceEEc-cCCeeeec
Q psy14258          9 TQCV-DADECLIDGSCDQ--TC-----TNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         9 ~~C~-d~~~C~~~~~Cs~--~C-----~n~~~~~~C~-~~g~~l~~   45 (440)
                      .+|+ ++|||.. ..|.+  .|     .+..++|+|. +.||....
T Consensus         2 ~~c~~~~~eC~s-~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~   46 (55)
T 3u7u_G            2 TSHLVKCAEKEK-TFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDR   46 (55)
T ss_dssp             -CCEEECCSTTT-TTSCTTCEEEEECCC--CCCEEEEECTTEESTT
T ss_pred             CCCcccCCCCcC-CCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCC
Confidence            4577 7899885 45555  56     3567899999 99998643

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=87.79  E-value=0.11  Score=47.12  Aligned_cols=34  Identities=12%  Similarity=0.379  Sum_probs=25.0

Q ss_pred             eecccCCC-CCCCCC--CcccCCCceEEc-cCCeeeec
Q psy14258         12 VDADECLI-DGSCDQ--TCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~~-~~~Cs~--~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +|+|||.. .+.|+.  .|.|++|+|.|. ..||....
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG   40 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNG   40 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECS
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCC
Confidence            57899984 468975  599999999999 99998543

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=87.66  E-value=0.38  Score=48.93  Aligned_cols=42  Identities=29%  Similarity=0.524  Sum_probs=33.7

Q ss_pred             ceecCCCCceeecccCCC-CCCCCC-----CcccCCCceEEc--cCCeeee
Q psy14258          2 TFRGPNKTQCVDADECLI-DGSCDQ-----TCTNTHLSYTYT--DEGFSFQ   44 (440)
Q Consensus         2 ~~~~~~~~~C~d~~~C~~-~~~Cs~-----~C~n~~~~~~C~--~~g~~l~   44 (440)
                      ||. .++++|++++||.. ++.|.+     .|.|+.++|+|.  +.||...
T Consensus        33 Gyt-Gdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~   82 (634)
T 1yo8_A           33 GFL-GNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGN   82 (634)
T ss_dssp             TBC-SCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEEC
T ss_pred             ccC-CCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccC
Confidence            454 35578999999985 456987     799999999996  8899864

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=87.58  E-value=0.22  Score=30.13  Aligned_cols=30  Identities=30%  Similarity=0.529  Sum_probs=23.5

Q ss_pred             ecccCCCCCCCCC--CcccCCCceEEc-cCCeee
Q psy14258         13 DADECLIDGSCDQ--TCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus        13 d~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~l   43 (440)
                      |+++|.. ..|.+  .|.+..++|+|. +.||..
T Consensus         2 d~d~C~~-~pC~ngg~C~~~~~~~~C~C~~G~~G   34 (39)
T 1edm_B            2 DGDQCES-NPCLNGGSCKDDINSYECWCPFGFEG   34 (39)
T ss_dssp             CCCTTTT-CCCCTTCEEEEETTEEEEECCTTCCS
T ss_pred             ccccCCC-CCCCCCCEeEcCCCceEeECCCCCcC
Confidence            5678874 45765  688899999999 999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=85.86  E-value=20  Score=32.59  Aligned_cols=156  Identities=8%  Similarity=-0.017  Sum_probs=88.0

Q ss_pred             CceEEEEeC--CCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCce
Q psy14258        218 YPYGVTVDF--PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDY  294 (440)
Q Consensus       218 ~P~gl~vD~--~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~  294 (440)
                      ....+++++  .+..|..+ ...+.|...++.......+.....-.....+++..+ .++.+-..++.|...+..+++..
T Consensus       127 ~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWA-DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             CEEEEECCC---CCEEEEE-ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             CEEEEEcCCCCCCCEEEEE-eCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            466788876  45554444 456788888887655543333211223567777765 55555566788888888777765


Q ss_pred             -EEEec--CCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCc---eEEEEEcCC
Q psy14258        295 -ETIAN--FSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRP---SVIDYHEKE  367 (440)
Q Consensus       295 -~~~~~--~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p---~~l~~d~~~  367 (440)
                       ..+..  ......+.+.          |+ .+|+.+..  +.|+..++... .......+...-..+   ..++|++.+
T Consensus       206 ~~~~~~~h~~~v~~l~fs----------~~g~~l~s~~~--~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          206 SSRFPVDEEAKIKEVKFA----------DNGYWMVVECD--QTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             CEECCCCTTSCEEEEEEC----------TTSSEEEEEES--SBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECTTS
T ss_pred             ccEEeccCCCCEEEEEEe----------CCCCEEEEEeC--CeEEEEEcCCC-CcceeecccccccccccceEEEECCCC
Confidence             44433  2233444433          34 34555443  48888888665 111001110000011   469999998


Q ss_pred             CEEEEEECCCCeEEEEecCC
Q psy14258        368 EYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       368 ~~vy~~d~~~~~I~r~~~~g  387 (440)
                      .++..+....+.|...+++.
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECT
T ss_pred             CEEEEecCCCCcEEEEEEcc
Confidence            87777655477777777654

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=85.74  E-value=0.36  Score=39.33  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=23.4

Q ss_pred             CceeecccCCCCCCCCC--CcccCCCceEEc-cCCeee
Q psy14258          9 TQCVDADECLIDGSCDQ--TCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus         9 ~~C~d~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~l   43 (440)
                      ..|.|+|+|.. ..|.+  .|.+.+++|.|. +.||..
T Consensus        43 ~~c~dideC~~-~pC~n~g~C~~~~~~y~C~C~~G~~G   79 (146)
T 1x7a_L           43 KQYVDGDQCEP-NPCLNGGLCKDDINSYECWCQVGFEG   79 (146)
T ss_dssp             -------CCSS-CSSCTTCEEEECSSCEEEECCSSEES
T ss_pred             ccCCCcCcCCC-CCCCCCCEeECCCCCEEEecCCCCcC
Confidence            47999999985 56876  899999999999 999974

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.73  E-value=1.7  Score=38.01  Aligned_cols=68  Identities=10%  Similarity=-0.047  Sum_probs=51.4

Q ss_pred             CCCceEEEEEcCCCEEEEEECCCCeEEEEecCC-------CCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258        355 LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG-------RGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAK  427 (440)
Q Consensus       355 ~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g-------~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~  427 (440)
                      ..+...++|+| ++.||-.  ..+.+++.++..       ...+.+-..+......+.+|. .++||.+.  .+.|.+.+
T Consensus        40 w~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~--dG~iyr~~  113 (236)
T 1tl2_A           40 WSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVS--KDKLYKAS  113 (236)
T ss_dssp             CTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEE--TTEEEEES
T ss_pred             cccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeC--CCEEEEeC
Confidence            56777999999 7779998  678899999843       123445455667789999995 77899993  38888776


Q ss_pred             e
Q psy14258        428 I  428 (440)
Q Consensus       428 ~  428 (440)
                      .
T Consensus       114 p  114 (236)
T 1tl2_A          114 P  114 (236)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=84.68  E-value=0.64  Score=31.22  Aligned_cols=27  Identities=19%  Similarity=0.300  Sum_probs=21.4

Q ss_pred             ceec-CCCCceeecccCCCCCCCCCCcccCCC
Q psy14258          2 TFRG-PNKTQCVDADECLIDGSCDQTCTNTHL   32 (440)
Q Consensus         2 ~~~~-~~~~~C~d~~~C~~~~~Cs~~C~n~~~   32 (440)
                      ||++ .|+++|.|+++    ..|+|.|.|...
T Consensus        28 Gy~L~~D~~tC~d~~~----~pC~~~c~n~~~   55 (59)
T 2wph_E           28 GYRLAENQKSCEPAVP----FPCGRVSVSQTS   55 (59)
T ss_dssp             TEEECTTSSCEEESSS----SCTTCCCSCCCS
T ss_pred             CcEECCCCCcccCCCC----CCCCCccccccc
Confidence            6775 89999999754    579999988643

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=84.02  E-value=0.21  Score=33.92  Aligned_cols=32  Identities=22%  Similarity=0.577  Sum_probs=25.2

Q ss_pred             ceeecccCCCCCCCCC----CcccCCCceEEc-cCCee
Q psy14258         10 QCVDADECLIDGSCDQ----TCTNTHLSYTYT-DEGFS   42 (440)
Q Consensus        10 ~C~d~~~C~~~~~Cs~----~C~n~~~~~~C~-~~g~~   42 (440)
                      .|.++++|.. ..|.+    .|.+..++|.|. ++||.
T Consensus         7 ~~~~~d~C~s-nPC~nga~gtC~~~~g~y~C~C~~Gy~   43 (61)
T 2k2s_B            7 LSETPAACSS-NPCGPEAAGTCKETNSGYICRCNQGYR   43 (61)
T ss_dssp             CTTSCCHHHH-CSSCSSSCCEEEECSSEEEEECCTTEE
T ss_pred             hcCCCCcCcC-CCCcCCCccccccCCCceEeECCCCCc
Confidence            3667778864 34654    589999999999 99998

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=82.91  E-value=0.41  Score=38.90  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=27.6

Q ss_pred             eecccCCCCCCCCC-CcccCCCceEEc-cCCeeeec
Q psy14258         12 VDADECLIDGSCDQ-TCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~~~~~Cs~-~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +|+|||.. ..|.+ .|.|++++|+|. +.||.+..
T Consensus         2 ~dideC~~-~pC~ng~C~n~~g~y~C~C~~G~~g~~   36 (147)
T 2w86_A            2 ADIDECES-SPCINGVCKNSPGSFICECSSESTLDP   36 (147)
T ss_dssp             CCCCGGGG-CCSBTSEEEEETTEEEEECCTTEEECT
T ss_pred             CcCccCcC-CCCCCCEeECCCCCEEeECCCCcccCC
Confidence            37889986 46875 899999999999 99998754

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=82.62  E-value=0.77  Score=29.98  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=24.3

Q ss_pred             ecccCCCC--CCCCC--Ccc--cCCCceEEc-cCCeeee
Q psy14258         13 DADECLID--GSCDQ--TCT--NTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        13 d~~~C~~~--~~Cs~--~C~--n~~~~~~C~-~~g~~l~   44 (440)
                      |+++|...  ..|.+  .|.  +..++|.|. ++||...
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~   40 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD   40 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSS
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCC
Confidence            56778753  46776  687  788999999 9999753

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=82.14  E-value=0.75  Score=46.79  Aligned_cols=37  Identities=19%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             CCCceeecccCCC-CCCCC--CCcccCC----CceEEc-cCCeee
Q psy14258          7 NKTQCVDADECLI-DGSCD--QTCTNTH----LSYTYT-DEGFSF   43 (440)
Q Consensus         7 ~~~~C~d~~~C~~-~~~Cs--~~C~n~~----~~~~C~-~~g~~l   43 (440)
                      ++++|++++||.. ++.|.  ..|.+++    ++|+|. ++||..
T Consensus        95 dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~G  139 (634)
T 1yo8_A           95 EKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG  139 (634)
T ss_dssp             CCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEE
T ss_pred             CCCcccccccccCCCcccccCccccccccccccceeeeccCCccc
Confidence            5678999999996 47897  4899988    999999 999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=81.97  E-value=32  Score=31.80  Aligned_cols=196  Identities=7%  Similarity=-0.050  Sum_probs=101.7

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCC
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTD  250 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~  250 (440)
                      ..++.+++.|...+|..+....+ ..|...++........+. .-.....+++.+.+..|..+.  .+.+..++.. |..
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d-~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~~  209 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVP-AIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGSC  209 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSS-CEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTCCE
T ss_pred             cCEEEEEEcCCCCEEEEEECCCC-CEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc--ceeEEEEEeccCcc
Confidence            34778999996556666554333 577777776433322222 223467899988777776653  4556666643 333


Q ss_pred             cEEEecCCccCceeeeeEecC-EEEEE-ecCCC---eEEEEeccCCCceE----EEecCC-CCeEEEEeccCCCCCCCCC
Q psy14258        251 RKTIRKGFPVQNLYDITVFEN-NLFVT-SWRNQ---SIIRVNKFNSDDYE----TIANFS-RPFAIHIYHRQKQPDALKP  320 (440)
Q Consensus       251 ~~~i~~~~~~~~p~gl~~~~~-~ly~t-d~~~~---~i~~~~~~~g~~~~----~~~~~~-~p~~~~v~~~~~qp~~~~~  320 (440)
                      .........-.....+++..+ ..+.+ .....   .++..+...+....    .+..-. ....+.+.          |
T Consensus       210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S----------p  279 (365)
T 4h5i_A          210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD----------M  279 (365)
T ss_dssp             EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC----------T
T ss_pred             eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC----------C
Confidence            222222111223456666544 33333 22211   23333433222211    111111 12333332          4


Q ss_pred             ceeEEeecCCccEEEEEEcCCCCCCceeeeee-cC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258        321 STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMF  386 (440)
Q Consensus       321 ~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~  386 (440)
                      ++.++++-+..+.|+..++...    .....+ .+ -....+|+|.|++.+ ..+-...++|+..++.
T Consensus       280 dg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          280 KGELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISPDSTY-VASVSAANTIHIIKLP  342 (365)
T ss_dssp             TSCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECTTSCE-EEEEETTSEEEEEECC
T ss_pred             CCCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECCCCCE-EEEEeCCCeEEEEEcC
Confidence            4444444344578888887654    222222 22 335679999997664 4666678888888874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=81.24  E-value=53  Score=33.88  Aligned_cols=228  Identities=9%  Similarity=-0.019  Sum_probs=118.1

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-C--ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH-K--IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG  248 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-~--~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG  248 (440)
                      ....+|+-|. .|+|++....    .+.|.  ||...+..... .  -.....|..| ..++||+...  +-+.+.+...
T Consensus        22 n~V~~I~qD~-~G~lWigT~~----GL~ry--DG~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigT~--~Gl~~yd~~~   91 (758)
T 3ott_A           22 SVVSCFLQDS-EGLIWIGSNK----GLFSY--DGYSTQQHFTYGENNNTRIYCGVII-DNTYLYMGTD--NGILVYNYRA   91 (758)
T ss_dssp             CCEEEEEECT-TSCEEEEESS----CEEEE--CSSCEEECSCTTSTTSSCEEEEEEE-TTTEEEEEET--TEEEEEETTT
T ss_pred             ceEEEEEECC-CCCEEEEECC----Ccccc--CCCceEEEEccCCCCCceEEEEEEc-CCCcEEEEeC--CCeEEEeCCC
Confidence            4578899998 7999997743    56665  45443222111 1  1234567778 6778888753  3577766543


Q ss_pred             CCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEe---cCC--CCeEEEEeccCCCCCCCCCcee
Q psy14258        249 TDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA---NFS--RPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       249 ~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~---~~~--~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      ..... ...........+...++.||+...  +.+++++..+++......   .+.  ....+...          .++.
T Consensus        92 ~~f~~-~~~~~~~~i~~i~~~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d----------~~g~  158 (758)
T 3ott_A           92 DRYEQ-PETDFPTDVRTMALQGDTLWLGAL--NGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRT----------KDNQ  158 (758)
T ss_dssp             TEECC-CSCCCCSCEEEEEEETTEEEEEET--TEEEEEETTTCCEEEECHHHHCCSCSCEEEEEEC----------TTCC
T ss_pred             CEEEC-cccCCCceEEEEEecCCcEEEEcC--CcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEc----------CCCC
Confidence            21111 111001123345555678888754  378888875544322211   111  11122111          2456


Q ss_pred             EEeecCCccEEEEEEcCCCCCCceeeeeec-CC--CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCC
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DL--KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYN  400 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~--~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~  400 (440)
                      |+++..  +.+.+++.... .......+.. .+  ....++..|..++.|++.. . +-+++.++.....+.+....-..
T Consensus       159 lWigt~--~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~-~Gl~~~~~~~~~~~~~~~l~~~~  233 (758)
T 3ott_A          159 IYVGTY--NGLCRYIPSNG-KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-E-GYLFQYFPSTGQIKQTEAFHNNS  233 (758)
T ss_dssp             EEEEET--TEEEEEETTTT-EEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-E-EEEEEEETTTTEEEEEEEEEEEE
T ss_pred             EEEEeC--CCHhhCccCCC-ceEEecCCCccccccceeEEEEEECCCCEEEEEE-C-CCCeEEcCCCCeEEeccCCCCCe
Confidence            666654  45766665443 1100011110 01  1245787887777677765 2 46888887654322221111134


Q ss_pred             eeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        401 VEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       401 ~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +..|+.|. .++||+...  +.+.+++...
T Consensus       234 i~~i~~d~-~g~lWigT~--~Gl~~~~~~~  260 (758)
T 3ott_A          234 IKSLALDG-NGDLLAGTD--NGLYVYHNDT  260 (758)
T ss_dssp             EEEEEECT-TCCEEEEET--TEEEEECCTT
T ss_pred             EEEEEEcC-CCCEEEEeC--CceeEEecCC
Confidence            67788884 566777652  3566666554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=81.12  E-value=52  Score=33.67  Aligned_cols=16  Identities=6%  Similarity=0.389  Sum_probs=13.4

Q ss_pred             eEEEEEcCCCEEEEEE
Q psy14258        359 SVIDYHEKEEYIYYAE  374 (440)
Q Consensus       359 ~~l~~d~~~~~vy~~d  374 (440)
                      .+++||+.++.+|+..
T Consensus       396 ~~~a~dp~~~~~yv~~  411 (677)
T 1kb0_A          396 HPMSFNPQTGLVYLPA  411 (677)
T ss_dssp             SCCEEETTTTEEEEEE
T ss_pred             CCceEcCCCCEEEEeC
Confidence            3689999999999864

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=80.05  E-value=0.7  Score=37.17  Aligned_cols=37  Identities=22%  Similarity=0.555  Sum_probs=30.4

Q ss_pred             CCcee-ecccCCCCCCCCC--CcccCCCceEEc-cCCeeeec
Q psy14258          8 KTQCV-DADECLIDGSCDQ--TCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus         8 ~~~C~-d~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +..|+ ++++|.. ..|..  .|.+..++|+|. ++||....
T Consensus        90 G~~C~~~i~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~G~~  130 (143)
T 4d90_A           90 GIHCQHNINECEV-EPCKNGGICTDLVANYSCECPGEFMGRN  130 (143)
T ss_dssp             STTSCEECCTTTT-CCSCTTCEEEEETTEEEEECCTTCBSTT
T ss_pred             CCCcccCCCcCCC-CCCCCCCEeECCCCCeEeECCCCCccCC
Confidence            56798 9999985 45654  899999999999 99998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	3e-36
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	1e-12
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	8e-10
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	2e-04
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-32
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	8e-13
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	3e-07
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	4e-05
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	6e-05
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	3e-04
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.003
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	0.004

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (331), Expect = 3e-36
 Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 31/265 (11%)

Query: 75  SFLTFAQ----EAIYFCTHYMEH--CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM 128
           + L FAQ    E +    + M+       + +      G+A D     +++T      P 
Sbjct: 2   THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--EPS 59

Query: 129 LERSLLDGTERFPMVTHKIVYPEA-------------------IYFCTHYMEHCMIAIDL 169
           + R+ L G E   ++   +  PE                    I           +  D 
Sbjct: 60  IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119

Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
            L  PRGI  DP  G +++T W    P +E S +DGT R  +    +  P G+T D  + 
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179

Query: 230 HVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKF 289
            + WVD      + +N     R+ + +G  +Q  + +T +  NL+ T W+  S+I ++  
Sbjct: 180 QLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237

Query: 290 NSDDYETI--ANFSRPFAIHIYHRQ 312
            S + +T      +R + I I   Q
Sbjct: 238 ISKEMDTFHPHKQTRLYGITIALSQ 262

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.7 bits (159), Expect = 1e-12
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIM--PITDLKRPSVIDYHEKEEYIYYAELTSYV 379
           T LL+A+     I+ L  +R+   +           K    + +   ++ +Y+ +++   
Sbjct: 2   THLLFAQTG--KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS 59

Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
           I R  + G     +I   + + EG+A+D +   ++WTD+ +  I VAK+     R +   
Sbjct: 60  IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (137), Expect = 8e-10
 Identities = 41/259 (15%), Positives = 83/259 (32%), Gaps = 16/259 (6%)

Query: 185 YMFFTKWGATRPM-LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDR 243
           ++ F + G    + LER+ +  TE    +        G+  D   K VYW D     I R
Sbjct: 3   HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62

Query: 244 INYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIANFS 301
            +  G +  TI +   + +   I +      +F T  +   I       +          
Sbjct: 63  ASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121

Query: 302 RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVI 361
                 +    +          L +        K  T   DG T + I+   +L  P+ +
Sbjct: 122 VNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGL 172

Query: 362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG 421
            +      + + +  ++  E       G+  V++ G+     +       NLY+TD    
Sbjct: 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTN 229

Query: 422 TINVAKISDFSIRKVLYKG 440
           ++    ++        +  
Sbjct: 230 SVIAMDLAISKEMDTFHPH 248

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 20/213 (9%)

Query: 236 TYLDF-----IDRINYDGTD-RKTIRKGFPVQNLYDIT-----VFENNLFVTSWRNQSII 284
           T+L F     I+R+  +    +KT  K F       I        +  ++ T     SI 
Sbjct: 2   THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61

Query: 285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT 344
           R +         +        I       +  AL      ++          +       
Sbjct: 62  RAS---------LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112

Query: 345 TEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGM 404
                       R  V D      Y       +  IE   M G  + ++    +    G+
Sbjct: 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL 172

Query: 405 AVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
             D  ++ L W DAG         +    RKVL
Sbjct: 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL 205

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-32
 Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 28/241 (11%)

Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERFPMVTHKIVYPEAIYFC 156
           NL     +  +  S  ++++     + M+  + LD     +    +++  I  P+ +   
Sbjct: 28  NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85

Query: 157 THYME-------------------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM 197
             +                             N SKPR I +DP  G+M++T WG T   
Sbjct: 86  WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAK 144

Query: 198 LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG 257
           +++  L+G + + +VT  I +P G+T+D  +  +YWVD+ L  I  I+ +G +RKTI + 
Sbjct: 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED 204

Query: 258 FP-VQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
              + + + + VFE+ +F T   N++I   N+    D   +A N   P  + ++H   QP
Sbjct: 205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264

Query: 316 D 316
            
Sbjct: 265 R 265

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 8e-13
 Identities = 33/263 (12%), Positives = 82/263 (31%), Gaps = 22/263 (8%)

Query: 184 GYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDR 243
            Y+FF      R  + +  LD +E   ++ + +     +  +  +  +YW D     I  
Sbjct: 2   AYLFF----TNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICS 56

Query: 244 INYDGTDRKTIRKGFPVQNLYD-----ITVFENNLFVTSWRNQSI-IRVNKFNSDDYETI 297
              D     +       +++       +    +N++ T     ++ +   K         
Sbjct: 57  TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 116

Query: 298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKR 357
            N S+P AI +             T              +        +   +   +++ 
Sbjct: 117 ENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENIQW 165

Query: 358 PSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTD 417
           P+ I        +Y+ +   + I    + G  ++ +++         ++    + ++WTD
Sbjct: 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225

Query: 418 AGIGTINVAKISDFSIRKVLYKG 440
                I  A     S   +L + 
Sbjct: 226 IINEAIFSANRLTGSDVNLLAEN 248

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 3e-07
 Identities = 34/243 (13%), Positives = 83/243 (34%), Gaps = 19/243 (7%)

Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERFPMVTHKIVYPYGVTVD 225
           NL     +  +  S  ++++     + M+  + LD     +    +++  I  P G+ VD
Sbjct: 28  NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85

Query: 226 FPTKHVYWVDTYLDFIDRINYDG-TDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSII 284
           +   ++YW D+ L  +   +  G   +   R+         +      ++ T W   + I
Sbjct: 86  WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145

Query: 285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT 344
           +    N  D  ++   +  +   I               L +   K   I  +    +G 
Sbjct: 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSG-------RLYWVDSKLHSISSIDV--NGG 196

Query: 345 TEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG 403
             + I+     L  P  +   E  + +++ ++ +  I            ++   + + E 
Sbjct: 197 NRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPED 254

Query: 404 MAV 406
           M +
Sbjct: 255 MVL 257

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 11 CVDADECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQG 45
           VD DEC   D      C NT  SY      G+   G
Sbjct: 2  AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAG 38

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)

Query: 13 DADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG 45
          D DEC   G C   C N   ++        +  G
Sbjct: 1  DIDECENGGFCSGVCHNLPGTFECICGPDSALAG 34

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 15 DECLIDGSCDQTCTNTHLSYT 35
          DEC    +C Q C N    Y 
Sbjct: 2  DECQDPDTCSQLCVNLEGGYK 22

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.003
 Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 10/44 (22%)

Query: 12 VDADECLI---------DGSCDQTCTNTHLSYTYT-DEGFSFQG 45
          VD DEC              C   C N    Y  +   G+  Q 
Sbjct: 2  VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE 45

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 15 DECLID-GSCDQTCTNTHLSYT 35
          +ECL + G C   C +  + Y 
Sbjct: 3  NECLDNNGGCSHVCNDLKIGYE 24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	100.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	100.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.88
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.87
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.86
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.82
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.81
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.75
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.66
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.64
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.64
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.55
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.5
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.48
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.47
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.46
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.86
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.73
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.73
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.72
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.69
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.54
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.54
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.39
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.38
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.37
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.3
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.26
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.24
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.22
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.11
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.09
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.09
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.99
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.91
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.91
d1szba2	45	Mannose-binding protein associated serine protease	97.9
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.84
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.82
d1nt0a3	45	Mannose-binding protein associated serine protease	97.81
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.74
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.73
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.72
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.37
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.29
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.26
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.13
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.11
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	97.08
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.02
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.0
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	96.96
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.7
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.51
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	96.36
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.18
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	96.11
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	95.93
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	95.8
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	94.72
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	94.56
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.46
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.18
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	92.33
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	91.69
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	90.36
d1tbga_	340	beta1-subunit of the signal-transducing G protein	89.24
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	88.6
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	88.11
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	86.7
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	86.15
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.2
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	80.17

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-46  Score=345.65  Aligned_cols=257  Identities=23%  Similarity=0.400  Sum_probs=225.1

Q ss_pred             eeEEEEeecccceeeeEEEecCCCceeeee-ecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccc
Q psy14258         47 KTHLYETIEAFWEECFGPMDIEEWDEGLSF-LTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT  125 (440)
Q Consensus        47 ~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~  125 (440)
                      |||||+++++     |+++++++...+..+ ...+  ++|||||+.+++|||+|...+.|+++.+++.....      ..
T Consensus         2 ~fLl~s~~~~-----I~~~~l~~~~~~~~~~~~~~--~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~------~~   68 (266)
T d1ijqa1           2 AYLFFTNRHE-----VRKMTLDRSEYTSLIPNLRN--VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------SY   68 (266)
T ss_dssp             CEEEEECBSS-----EEEEETTSCCCEEEECSCSS--EEEEEEETTTTEEEEEETTTTEEEEEEC--------------C
T ss_pred             CEEEEECCCe-----EEEEECCCCcceeeeCCCCc--eEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc------ce
Confidence            7999999999     999999998877333 3555  99999999999999999999999999998754321      12


Q ss_pred             cceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEE
Q psy14258        126 RPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLER  200 (440)
Q Consensus       126 ~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r  200 (440)
                      +.++..++..|.+ |+||.+++|||+    ++|++++++|..+..++...+..|++|++||.+|+|||++++.. ++|+|
T Consensus        69 ~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~-~~I~r  147 (266)
T d1ijqa1          69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKK  147 (266)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEEE
T ss_pred             EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC-cceeE
Confidence            2345677889999 999999999999    78999999999998888888999999999999999999999876 89999


Q ss_pred             EeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC-CccCceeeeeEecCEEEEEecC
Q psy14258        201 SLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFENNLFVTSWR  279 (440)
Q Consensus       201 ~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~-~~~~~p~gl~~~~~~ly~td~~  279 (440)
                      ++|||++++.++...+..|+||++|+.+++|||+|...++|++++++|+++..+... ..+.+|++|++++++|||+|+.
T Consensus       148 ~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~  227 (266)
T d1ijqa1         148 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII  227 (266)
T ss_dssp             EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT
T ss_pred             eccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECC
Confidence            999999999999888999999999999999999999999999999999998887763 3468999999999999999999


Q ss_pred             CCeEEEEeccCCCceEEEe-cCCCCeEEEEeccCCCCCC
Q psy14258        280 NQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDA  317 (440)
Q Consensus       280 ~~~i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~  317 (440)
                      +++|+++++.+|+..+.+. +...|.+++++|+.+||.+
T Consensus       228 ~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~~QP~g  266 (266)
T d1ijqa1         228 NEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRG  266 (266)
T ss_dssp             TTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCC
T ss_pred             CCeEEEEECCCCcceEEEEcCCCCceEEEEECCccCCCC
Confidence            9999999999998888554 6678999999999999963

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-44  Score=332.41  Aligned_cols=247  Identities=21%  Similarity=0.348  Sum_probs=220.5

Q ss_pred             eeEEEEeecccceeeeEEEecCCCcee-------eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCccee
Q psy14258         47 KTHLYETIEAFWEECFGPMDIEEWDEG-------LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFF  119 (440)
Q Consensus        47 ~~ll~s~~~~~~~~~I~~~~l~~~~~~-------~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~  119 (440)
                      -||||++++.     |+++++++....       +..+...  +.|||||+.+++|||+|...++|+++.++++....  
T Consensus         2 ~fLl~s~~~~-----I~~~~ld~~~~~~~~~~~~~~~~~~~--~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~--   72 (263)
T d1npea_           2 THLLFAQTGK-----IERLPLERNTMKKTEAKAFLHIPAKV--IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--   72 (263)
T ss_dssp             EEEEEEEEEE-----EEEEEESSSCBCGGGCEEEEEEEEEE--EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--
T ss_pred             CEEEEeCCCe-----EEEEECCCccccccccccccccCCCc--EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE--
Confidence            3899999999     999999987644       2223334  89999999999999999999999999999876433  


Q ss_pred             eccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC
Q psy14258        120 TKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT  194 (440)
Q Consensus       120 ~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~  194 (440)
                              ++..++..|.+ |+||.+++|||+    ++|++++++|+.+++++...+..|++|++||.+|+|||++++..
T Consensus        73 --------v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~  144 (263)
T d1npea_          73 --------IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD  144 (263)
T ss_dssp             --------EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred             --------EEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCC
Confidence                    24567789999 999999999999    79999999999999998888899999999999999999998864


Q ss_pred             CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEE
Q psy14258        195 RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLF  274 (440)
Q Consensus       195 ~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly  274 (440)
                      .++|+|++|||++++.++..++..|+||++|+.+++|||+|.+.++|++++++|.+++++..+  +.+|+||++++++||
T Consensus       145 ~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~--~~~P~~lav~~~~lY  222 (263)
T d1npea_         145 NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLY  222 (263)
T ss_dssp             SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--CCSEEEEEEETTEEE
T ss_pred             CcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC--CCCcEEEEEECCEEE
Confidence            478999999999999999888999999999999999999999999999999999999988876  789999999999999


Q ss_pred             EEecCCCeEEEEeccCCCceEEEe--cCCCCeEEEEeccC
Q psy14258        275 VTSWRNQSIIRVNKFNSDDYETIA--NFSRPFAIHIYHRQ  312 (440)
Q Consensus       275 ~td~~~~~i~~~~~~~g~~~~~~~--~~~~p~~~~v~~~~  312 (440)
                      ||||.+++|+++++.+|+...++.  ...+|++|++.|++
T Consensus       223 wtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~~  262 (263)
T d1npea_         223 YTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             EEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCCC
Confidence            999999999999999998877663  55589999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-30  Score=238.60  Aligned_cols=247  Identities=17%  Similarity=0.208  Sum_probs=200.6

Q ss_pred             EEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEc
Q psy14258         94 CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAID  168 (440)
Q Consensus        94 ~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~  168 (440)
                      .|+|+..  +.|.++.+++......     .....+......+.+ |+|+.++.|||+    ++|.+.+++|+..++++.
T Consensus         3 fLl~s~~--~~I~~~~ld~~~~~~~-----~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~   75 (263)
T d1npea_           3 HLLFAQT--GKIERLPLERNTMKKT-----EAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR   75 (263)
T ss_dssp             EEEEEEE--EEEEEEEESSSCBCGG-----GCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC
T ss_pred             EEEEeCC--CeEEEEECCCcccccc-----ccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE
Confidence            5778877  5899999988765432     111223445566889 999999999999    789999999999999988


Q ss_pred             CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEc
Q psy14258        169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINY  246 (440)
Q Consensus       169 ~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~  246 (440)
                      .++..|.+||+|..++.|||+|...  .+|+++++||+.++++....+..|.+|++|+..+.|||++.+.+  +|+++++
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~--~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~  153 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQL--DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             eccccccEEEEeccCCeEEEeccCC--CEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecC
Confidence            8889999999999999999999876  59999999999999888888899999999999999999997654  6999999


Q ss_pred             cCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeE
Q psy14258        247 DGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFL  324 (440)
Q Consensus       247 dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l  324 (440)
                      ||++++.+... .+..|.||+++  ++.|||+|...+.|.+++..++ ..                              
T Consensus       154 dG~~~~~i~~~-~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-~~------------------------------  201 (263)
T d1npea_         154 DGTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GR------------------------------  201 (263)
T ss_dssp             TSCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EE------------------------------
T ss_pred             CCCCceeeeee-cccccceEEEeecCcEEEEEeCCCCEEEEEECCCC-Ce------------------------------
Confidence            99999888764 37899999998  5699999998888887776311 11                              


Q ss_pred             EeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCe-EEEEECCCCCeee
Q psy14258        325 LYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK-EVVIDTGIYNVEG  403 (440)
Q Consensus       325 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~-~~~~~~~~~~~~g  403 (440)
                                              ...+.++..|.+|+++  +++|||+|...++|+|++..++.. .++.......|.|
T Consensus       202 ------------------------~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~g  255 (263)
T d1npea_         202 ------------------------RKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYG  255 (263)
T ss_dssp             ------------------------EEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCC
T ss_pred             ------------------------EEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcce
Confidence                                    1112245578899998  689999999999999999986544 3444456678999


Q ss_pred             EEEe
Q psy14258        404 MAVD  407 (440)
Q Consensus       404 lAvD  407 (440)
                      |++=
T Consensus       256 i~v~  259 (263)
T d1npea_         256 ITIA  259 (263)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9974

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-30  Score=234.97  Aligned_cols=234  Identities=18%  Similarity=0.251  Sum_probs=187.8

Q ss_pred             EEEe--ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC----ceeEEecCccCce
Q psy14258        147 IVYP--EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE----RFPMVTHKIVYPY  220 (440)
Q Consensus       147 lY~~--~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~----~~~l~~~~~~~P~  220 (440)
                      |+++  ..|.+.++++.....++. ++..|.+|++|+.+++|||+|...  ..|.++++||..    .+.++...+..|.
T Consensus         4 Ll~s~~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~--~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           4 LFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQ--RMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTT--TEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEECCCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCC--CEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            6777  779999999998887765 788999999999999999999876  599999999843    4556666788999


Q ss_pred             EEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEe
Q psy14258        221 GVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIA  298 (440)
Q Consensus       221 gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~  298 (440)
                      |||+|..+++|||+|...++|++++++|.....+.... +.+|.+|+++  .+.|||++++..                 
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~-~~~P~~l~vd~~~g~ly~~~~~~~-----------------  142 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTP-----------------  142 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEEETTTTEEEEEECSSS-----------------
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCC-CCCcceEEEEcccCeEEEeccCCC-----------------
Confidence            99999999999999999999999999999887776642 7889999998  459999997532                 


Q ss_pred             cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCC
Q psy14258        299 NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY  378 (440)
Q Consensus       299 ~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~  378 (440)
                                                       .+|.++.+++. ..  ..+...++..|.||++|+.+++|||+|...+
T Consensus       143 ---------------------------------~~I~r~~~dGs-~~--~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         143 ---------------------------------AKIKKGGLNGV-DI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             ---------------------------------CEEEEEETTSC-CE--EEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ---------------------------------cceeEeccCCC-ce--ecccccccceeeEEEeeccccEEEEecCCcC
Confidence                                             34444555554 11  1111235678999999999999999999999


Q ss_pred             eEEEEecCCCCeEEEEEC--CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEeee
Q psy14258        379 VIERRKMFGRGKEVVIDT--GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK  439 (440)
Q Consensus       379 ~I~r~~~~g~~~~~~~~~--~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l~~  439 (440)
                      .|++++++|+.+++++..  .+..|.|||++  +++|||+|...++|.+++..+.+..+.|..
T Consensus       187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence            999999999988887763  35679999999  789999999999999998654354555543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=2e-23  Score=191.43  Aligned_cols=240  Identities=16%  Similarity=0.204  Sum_probs=185.3

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR  251 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~  251 (440)
                      -.|++||+|+ +|.+|+++.... .+|.+.+.++.....+.......|.||++| ..++|||+|.....+ ++..++...
T Consensus        14 ~~P~~vavd~-dG~i~v~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~gvav~-~~g~i~v~d~~~~~i-~~~~~~~~~   89 (260)
T d1rwia_          14 LSPSGVAVDS-AGNVYVTSEGMY-GRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVV-TLAAGSNNQ   89 (260)
T ss_dssp             CCEEEEEECT-TCCEEEEECSSS-CEEEEEC----CEEECCCCSCCSCCCEEEC-TTCCEEEEETTTEEE-EECTTCSCC
T ss_pred             CCCCEEEEcC-CCCEEEEEcCCC-CEEEEEcCCCceEEEeccCCccCceEEEEc-CCCCEEEeeeeecee-eeeeeccce
Confidence            4799999998 699999998765 789999988887766655667899999999 467899999876555 444455544


Q ss_pred             EEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEE-EecCCCCeEEEEeccCCCCCCCCCceeEEeecC
Q psy14258        252 KTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYET-IANFSRPFAIHIYHRQKQPDALKPSTFLLYAKG  329 (440)
Q Consensus       252 ~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~-~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~  329 (440)
                      ..... ..+..|.+|+++.+ .||++|..++.+.+++..+...... ...+..|.++.+.          +++.+++++.
T Consensus        90 ~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~----------~~g~~~v~~~  158 (260)
T d1rwia_          90 TVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD----------NSGNVYVTDT  158 (260)
T ss_dssp             EECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC----------TTCCEEEEEG
T ss_pred             eeeee-eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec----------CCCCEeeecc
Confidence            44333 23788999999865 9999999999999888754333332 2356688998876          3566889888


Q ss_pred             CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258        330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       330 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~  409 (440)
                      ..++|.+++.++. .  ........+..|.+|++|+. +.|||+|...++|+++..++.....+...++..|.|||+|. 
T Consensus       159 ~~~~i~~~d~~~~-~--~~~~~~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~-  233 (260)
T d1rwia_         159 DNNRVVKLEAESN-N--QVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-  233 (260)
T ss_dssp             GGTEEEEECTTTC-C--EEECCCSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECT-
T ss_pred             ccccccccccccc-e--eeeeeccccCCCccceeeee-eeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeC-
Confidence            7789999988776 1  22344466789999999986 46999999999999999998877776667788999999996 


Q ss_pred             CCcEEEEeCCCCeEEEEEeCCC
Q psy14258        410 ANNLYWTDAGIGTINVAKISDF  431 (440)
Q Consensus       410 ~~~lYwtd~~~~~I~~~~~~g~  431 (440)
                      .++|||+|.++++|.+++..+.
T Consensus       234 ~g~l~vad~~~~rI~~i~~~~~  255 (260)
T d1rwia_         234 DRTVYVADRGNDRVVKLTSLEH  255 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCEEEEECCCCEEEEEeCCCC
Confidence            4689999999999999987763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=2.5e-21  Score=177.32  Aligned_cols=233  Identities=13%  Similarity=0.204  Sum_probs=179.4

Q ss_pred             cccce-eeeecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258        134 LDGTE-RFPMVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  207 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~  207 (440)
                      ..|.+ |+|.. +++|++     ++|.+.+.++.............|.+|++|+ .|.|||++...   .+.+...++..
T Consensus        14 ~~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~---~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNN---RVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTT---EEEEECTTCSC
T ss_pred             CCCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeee---ceeeeeeeccc
Confidence            47999 99965 569998     5788888888776666556678999999998 68999999874   45556666666


Q ss_pred             ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEE
Q psy14258        208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRV  286 (440)
Q Consensus       208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~  286 (440)
                      ........+..|.++++| ..++||++|...+++..++.++......... .+..|.+|+++.+ .+|++++.+++|.++
T Consensus        89 ~~~~~~~~~~~p~~iavd-~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             CEECCCCSCCSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eeeeeeeeeeeccccccc-ccceeEeeccccccccccccccceeeeeeec-ccCCcceeeecCCCCEeeecccccccccc
Confidence            554444557889999999 4678999999999999999888776665443 3789999999755 999999999999999


Q ss_pred             eccCCCceEEE-ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc
Q psy14258        287 NKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE  365 (440)
Q Consensus       287 ~~~~g~~~~~~-~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~  365 (440)
                      +..+....... ..+..|.++.+.          +++.|++++...++|.++..++. .  .......++..|.+|++|+
T Consensus       167 d~~~~~~~~~~~~~~~~p~gi~~d----------~~g~l~vsd~~~~~i~~~~~~~~-~--~~~~~~~~~~~P~~i~~d~  233 (260)
T d1rwia_         167 EAESNNQVVLPFTDITAPWGIAVD----------EAGTVYVTEHNTNQVVKLLAGST-T--STVLPFTGLNTPLAVAVDS  233 (260)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEEC----------TTCCEEEEETTTTEEEEECTTCS-C--CEECCCCSCCCEEEEEECT
T ss_pred             ccccceeeeeeccccCCCccceee----------eeeeeeeeecCCCEEEEEeCCCC-e--EEEEccCCCCCeEEEEEeC
Confidence            97544333322 356689999887          46789999998899999987766 1  1233445678999999998


Q ss_pred             CCCEEEEEECCCCeEEEEecCC
Q psy14258        366 KEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       366 ~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                      . +.|||+|...++|.|++..+
T Consensus       234 ~-g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         234 D-RTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             T-CCEEEEEGGGTEEEEECCCG
T ss_pred             C-CCEEEEECCCCEEEEEeCCC
Confidence            6 46999999999999998765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.87  E-value=6.9e-20  Score=172.26  Aligned_cols=256  Identities=16%  Similarity=0.111  Sum_probs=191.4

Q ss_pred             EEcCCCCCceEEEEcCCCCeEEEEEcCCC-----CCcEEEEeCCCCCceeEEec----CccCceEEEEeCCCCEEEEEeC
Q psy14258        166 AIDLNLSKPRGIALDPTSGYMFFTKWGAT-----RPMLERSLLDGTERFPMVTH----KIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       166 ~~~~~~~~P~~iavd~~~g~lywtd~~~~-----~~~I~r~~~dG~~~~~l~~~----~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      .+..++..|+|+++|+ .|.||+++....     .++|.|.+.++.....+...    ....|+||++|+.+++||++|.
T Consensus        12 ~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~   90 (314)
T d1pjxa_          12 KVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             EEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred             EeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC
Confidence            3456889999999998 799999986531     25799999988766554332    2346999999988889999986


Q ss_pred             CCCcEEEEEccCCCcEEEec---CCccCceeeeeEecC-EEEEEecC---------------CCeEEEEeccCCCceEEE
Q psy14258        237 YLDFIDRINYDGTDRKTIRK---GFPVQNLYDITVFEN-NLFVTSWR---------------NQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       237 ~~~~i~~~~~dG~~~~~i~~---~~~~~~p~gl~~~~~-~ly~td~~---------------~~~i~~~~~~~g~~~~~~  297 (440)
                      . +.|.+++.+|.....+..   +..+..|.+++++.+ .||+||..               .+.|+++++ .|+...+.
T Consensus        91 ~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~  168 (314)
T d1pjxa_          91 R-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD  168 (314)
T ss_dssp             T-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE
T ss_pred             C-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee
Confidence            5 579999999876554433   334667999999875 99999853               347888887 45555566


Q ss_pred             ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCce--eeeee--cCCCCceEEEEEcCCCEEEEE
Q psy14258        298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQ--AIMPI--TDLKRPSVIDYHEKEEYIYYA  373 (440)
Q Consensus       298 ~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~--~~~~~--~~~~~p~~l~~d~~~~~vy~~  373 (440)
                      ..+..|.++.+.....     ....+|++++...++|++++++..+....  ....+  .....|.||++|..+ .||++
T Consensus       169 ~~~~~pNGi~~~~d~d-----~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa  242 (314)
T d1pjxa_         169 TAFQFPNGIAVRHMND-----GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVA  242 (314)
T ss_dssp             EEESSEEEEEEEECTT-----SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEE
T ss_pred             CCcceeeeeEECCCCC-----cceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEE
Confidence            6777899998763111     01257999999889999998876532211  11122  223468899999875 59999


Q ss_pred             ECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        374 ELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       374 d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      +...++|++++++|......+......|.++|+...++.||+|++.+++|.++++.-
T Consensus       243 ~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            999999999999976554445555578999999987778999999999999999865

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=3.2e-19  Score=164.83  Aligned_cols=239  Identities=12%  Similarity=0.056  Sum_probs=185.3

Q ss_pred             cccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcC-----CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEE
Q psy14258        132 SLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDL-----NLSKPRGIALDPTSGYMFFTKWGATRPMLERS  201 (440)
Q Consensus       132 ~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~-----~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~  201 (440)
                      .+..|.+ |+|+. ++||++    ++|.+.+.+|...+.+...     ....|.+++++...+..+|+....+ .+|.+.
T Consensus        21 ~f~~P~gvavd~d-g~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~i~~~   98 (279)
T d1q7fa_          21 QFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-HQIQIY   98 (279)
T ss_dssp             CBSCEEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-CEEEEE
T ss_pred             eECCccEEEEcCC-CCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCc-cccccc
Confidence            4778999 99975 569999    7999999999887765331     3457999999887788888766554 699999


Q ss_pred             eCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCC
Q psy14258        202 LLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRN  280 (440)
Q Consensus       202 ~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~  280 (440)
                      +.+|.....+....+..|.++++| ..+++|+++....++...+.+|+....+.....+..|.+++++.+ .+|++++..
T Consensus        99 ~~~g~~~~~~~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_          99 NQYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cccccceeecCCCcccccceeccc-cCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccc
Confidence            999987766655567889999999 677899999999999999999987777655445789999999865 999999998


Q ss_pred             CeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceE
Q psy14258        281 QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSV  360 (440)
Q Consensus       281 ~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~  360 (440)
                      +.|+.++.. |+.                                        +..+.  ..          ..+..|.+
T Consensus       178 ~~V~~~d~~-G~~----------------------------------------~~~~g--~~----------g~~~~P~g  204 (279)
T d1q7fa_         178 HCVKVFNYE-GQY----------------------------------------LRQIG--GE----------GITNYPIG  204 (279)
T ss_dssp             TEEEEEETT-CCE----------------------------------------EEEES--CT----------TTSCSEEE
T ss_pred             cceeeeecC-Cce----------------------------------------eeeec--cc----------ccccCCcc
Confidence            888877652 211                                        11110  11          12457999


Q ss_pred             EEEEcCCCEEEEEECCC-CeEEEEecCCCCeEEEEE-CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        361 IDYHEKEEYIYYAELTS-YVIERRKMFGRGKEVVID-TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~-~~I~r~~~~g~~~~~~~~-~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      |++|+.++ ||++|... ++|...+.+|+-..++.. .....|.+||+|+. ++||+++. +++|.+++..
T Consensus       205 iavD~~G~-i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~d-G~l~V~~~-n~~v~~fr~~  272 (279)
T d1q7fa_         205 VGINSNGE-ILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDD-GSVVLASK-DYRLYIYRYV  272 (279)
T ss_dssp             EEECTTCC-EEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETT-TEEEEEET-TTEEEEEECS
T ss_pred             cccccCCe-EEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCC-CcEEEEeC-CCeEEEEEee
Confidence            99999765 99999765 479988999976555544 23457999999985 57999985 7899999865

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.82  E-value=3e-18  Score=161.37  Aligned_cols=211  Identities=14%  Similarity=0.128  Sum_probs=155.4

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC----CCcEEEEEcc
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY----LDFIDRINYD  247 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~----~~~i~~~~~d  247 (440)
                      ..++|+++|+ .|.|||+|...  ++|.|.+.+|.............|+||+++ ..++||+++..    ...+..++..
T Consensus        40 ~~lEG~~~D~-~G~Ly~~D~~~--g~I~ri~p~g~~~~~~~~~~~~~p~gla~~-~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          40 LQLEGLNFDR-QGQLFLLDVFE--GNIFKINPETKEIKRPFVSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CCEEEEEECT-TSCEEEEETTT--CEEEEECTTTCCEEEEEECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             cCcEeCEECC-CCCEEEEECCC--CEEEEEECCCCeEEEEEeCCCCCeeEEEEC-CCCCEEEEecCCCccceeEEEEcCC
Confidence            3468999998 68999999876  699999999987666666666789999999 46799999854    3468888888


Q ss_pred             CCCcEEEecC-CccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEE
Q psy14258        248 GTDRKTIRKG-FPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLL  325 (440)
Q Consensus       248 G~~~~~i~~~-~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~  325 (440)
                      +.....+... .....|.+++++.+ ++|++|.......                                         
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~-----------------------------------------  154 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN-----------------------------------------  154 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB-----------------------------------------
T ss_pred             CceeeeeccCCCcccCCcceeEEeccceeeccccccccc-----------------------------------------
Confidence            8777666552 23567999998865 8999986432100                                         


Q ss_pred             eecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC--eE----E--EEECC
Q psy14258        326 YAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG--KE----V--VIDTG  397 (440)
Q Consensus       326 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~--~~----~--~~~~~  397 (440)
                          ..+.+++++.++.    .......++..|.||+++++++.||++|...++|++++++...  ..    .  ....+
T Consensus       155 ----~~g~v~~~~~dg~----~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~  226 (319)
T d2dg1a1         155 ----PLGGVYYVSPDFR----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG  226 (319)
T ss_dssp             ----CCEEEEEECTTSC----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred             ----CcceeEEEecccc----eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCC
Confidence                0144555555554    2222234566799999999999999999999999999986432  11    1  11234


Q ss_pred             CCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEE
Q psy14258        398 IYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKV  436 (440)
Q Consensus       398 ~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~  436 (440)
                      ...|.|||+|. .++||+++.+.++|.+++.+|+...++
T Consensus       227 ~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         227 HEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             SSEEEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred             ccceeeeeEcC-CCCEEEEEcCCCEEEEECCCCcEEEEE
Confidence            56799999996 668999999999999999999544433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=1.3e-17  Score=153.81  Aligned_cols=238  Identities=12%  Similarity=0.135  Sum_probs=183.8

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-----ceEEEE
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-----EAIYFC  156 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-----~~I~~~  156 (440)
                      |.+|++|+. +.||++|..+++|++++.+|..+..+.....     .......|.+ +++...+..+|+     .+|.+.
T Consensus        25 P~gvavd~d-g~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          25 PSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGK-----RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             EEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCBSS-----STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             ccEEEEcCC-CCEEEEECCCCEEEEEeCCCCEEEEecccCC-----CcccccccccccccccccccceeccCCccccccc
Confidence            999999975 7799999999999988877654443311111     1123457999 988887777776     689999


Q ss_pred             ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe-cCccCceEEEEeCCCCEEEEEe
Q psy14258        157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d  235 (440)
                      +.+|.....+....+..|.++++|+ +|.+|+++...  .++.+.+.+|+....+-. ..+..|.++++| .+++||++|
T Consensus        99 ~~~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~--~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d-~~g~i~v~d  174 (279)
T d1q7fa_          99 NQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKV--MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVN-DKQEIFISD  174 (279)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTT--TEEEEECTTSCEEEEEECTTTCSSEEEEEEC-SSSEEEEEE
T ss_pred             cccccceeecCCCcccccceecccc-CCcEEEEeecc--ceeeEeccCCceeecccccccccccceeeec-cceeEEeee
Confidence            9999988877666788999999998 68999999876  589999999976555432 347789999999 667999999


Q ss_pred             CCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCC-eEEEEeccCCCceEEEe-c--CCCCeEEEEec
Q psy14258        236 TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQ-SIIRVNKFNSDDYETIA-N--FSRPFAIHIYH  310 (440)
Q Consensus       236 ~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~-~i~~~~~~~g~~~~~~~-~--~~~p~~~~v~~  310 (440)
                      ...++|..++.+|.....+.....+.+|.||+++.+ +||++|+.++ +|..+++ +|+....+. .  ...|.++++. 
T Consensus       175 ~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~-  252 (279)
T d1q7fa_         175 NRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM-  252 (279)
T ss_dssp             GGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE-
T ss_pred             ccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe-
Confidence            999999999999987777754334789999999855 9999998654 5777775 576555443 2  3468999887 


Q ss_pred             cCCCCCCCCCceeEEeecCCccEEEEEEcCCC
Q psy14258        311 RQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD  342 (440)
Q Consensus       311 ~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~  342 (440)
                               +++.|++++. +++|+.+....-
T Consensus       253 ---------~dG~l~V~~~-n~~v~~fr~~~~  274 (279)
T d1q7fa_         253 ---------DDGSVVLASK-DYRLYIYRYVQL  274 (279)
T ss_dssp             ---------TTTEEEEEET-TTEEEEEECSCC
T ss_pred             ---------CCCcEEEEeC-CCeEEEEEeeee
Confidence                     5778999885 588887775443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.80  E-value=1.5e-17  Score=156.15  Aligned_cols=241  Identities=12%  Similarity=0.059  Sum_probs=177.6

Q ss_pred             eeccccccce-eeeecCCcEEEe-----------ceEEEEecCCceEEEEEcC----CCCCceEEEEcCCCCeEEEEEcC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP-----------EAIYFCTHYMEHCMIAIDL----NLSKPRGIALDPTSGYMFFTKWG  192 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~-----------~~I~~~~~dg~~~~~~~~~----~~~~P~~iavd~~~g~lywtd~~  192 (440)
                      +..++..|+| |+|..+ +||++           ++|.+.++++.....+...    ....|.||++|+..+.||+++..
T Consensus        13 v~~~~~g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~   91 (314)
T d1pjxa_          13 VTEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             EECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             eecCCCCCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC
Confidence            5678999999 999755 59987           3699999988776655432    12469999999976688998865


Q ss_pred             CCCCcEEEEeCCCCCceeEEec----CccCceEEEEeCCCCEEEEEeCC---------------CCcEEEEEccCCCcEE
Q psy14258        193 ATRPMLERSLLDGTERFPMVTH----KIVYPYGVTVDFPTKHVYWVDTY---------------LDFIDRINYDGTDRKT  253 (440)
Q Consensus       193 ~~~~~I~r~~~dG~~~~~l~~~----~~~~P~gl~vD~~~~~ly~~d~~---------------~~~i~~~~~dG~~~~~  253 (440)
                         .+|.+.+.+|...+.+...    .+..|+.+++| ..++||++|..               .++|++++.+|.... 
T Consensus        92 ---~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~-  166 (314)
T d1pjxa_          92 ---LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQ-  166 (314)
T ss_dssp             ---TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEE-
T ss_pred             ---CeEEEEeCCCcEEEEEeccccccccCCCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEEeecCceeE-
Confidence               4899999999765544332    25579999999 56799999854               237889988886443 


Q ss_pred             EecCCccCceeeeeEecC------EEEEEecCCCeEEEEeccCCCce---EEEecC-----CCCeEEEEeccCCCCCCCC
Q psy14258        254 IRKGFPVQNLYDITVFEN------NLFVTSWRNQSIIRVNKFNSDDY---ETIANF-----SRPFAIHIYHRQKQPDALK  319 (440)
Q Consensus       254 i~~~~~~~~p~gl~~~~~------~ly~td~~~~~i~~~~~~~g~~~---~~~~~~-----~~p~~~~v~~~~~qp~~~~  319 (440)
                      +..+  +..|.||++..+      .||++|..+++|++++.......   +++..+     ..|.++++.          
T Consensus       167 ~~~~--~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD----------  234 (314)
T d1pjxa_         167 VDTA--FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD----------  234 (314)
T ss_dssp             EEEE--ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB----------
T ss_pred             eeCC--cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEe----------
Confidence            3333  778999998532      69999999999999876443222   122221     136678776          


Q ss_pred             CceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCe
Q psy14258        320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK  390 (440)
Q Consensus       320 ~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~  390 (440)
                      .++.|++++...++|.+++.++.....  .+... ...|..++|.++++.||+++...++|+|+++.-.++
T Consensus       235 ~~GnlyVa~~~~g~I~~~dp~~g~~~~--~i~~p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         235 EDNNLLVANWGSSHIEVFGPDGGQPKM--RIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             TTCCEEEEEETTTEEEEECTTCBSCSE--EEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             cCCcEEEEEcCCCEEEEEeCCCCEEEE--EEECC-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence            468899998777999999987651111  22222 357899999998889999999999999999876554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.75  E-value=1.7e-15  Score=142.25  Aligned_cols=246  Identities=11%  Similarity=0.048  Sum_probs=176.2

Q ss_pred             cccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC--CCcEEEEeCC
Q psy14258        132 SLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT--RPMLERSLLD  204 (440)
Q Consensus       132 ~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~--~~~I~r~~~d  204 (440)
                      .....+| ++|..+ +|||+    ++|.+.+++|.............|.||++++ .|.||+++.+..  ...|.+.+.+
T Consensus        38 ~~~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          38 KGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             SCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CCcCcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCC
Confidence            3345689 999765 69999    8999999999876555555667899999999 699999986532  2568888888


Q ss_pred             CCCceeEEec--CccCceEEEEeCCCCEEEEEeCCC------CcEEEEEccCCCcEEEecCCccCceeeeeEec--CEEE
Q psy14258        205 GTERFPMVTH--KIVYPYGVTVDFPTKHVYWVDTYL------DFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--NNLF  274 (440)
Q Consensus       205 G~~~~~l~~~--~~~~P~gl~vD~~~~~ly~~d~~~------~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly  274 (440)
                      +.....+...  ....|+++++| ..++||++|...      +.+.+++.+|+..+.+..+  +..|.||++..  +.||
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d-~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLW  192 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEE
T ss_pred             CceeeeeccCCCcccCCcceeEE-eccceeecccccccccCcceeEEEecccceeEEEeec--cceeeeeeeccccceEE
Confidence            8776666543  35679999999 566899999653      3689999999887777665  78899999974  4899


Q ss_pred             EEecCCCeEEEEeccCCC-ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec
Q psy14258        275 VTSWRNQSIIRVNKFNSD-DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT  353 (440)
Q Consensus       275 ~td~~~~~i~~~~~~~g~-~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~  353 (440)
                      ++|...++|++++..... .....                                  ..             .......
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~----------------------------------~~-------------~~~~~~~  225 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPF----------------------------------GA-------------TIPYYFT  225 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEE----------------------------------EE-------------EEEEECC
T ss_pred             EecccCCceEEEEEcCCCceeccc----------------------------------cc-------------eeeeccC
Confidence            999999999888753211 10000                                  00             0011112


Q ss_pred             CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC-----CCCeeeEEEecCCCcEEEEe-----CCCCeE
Q psy14258        354 DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG-----IYNVEGMAVDWMANNLYWTD-----AGIGTI  423 (440)
Q Consensus       354 ~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~-----~~~~~glAvD~~~~~lYwtd-----~~~~~I  423 (440)
                      ....|.|+++|..++ ||+++...++|.+++++|.....+....     ...+..+|+......||.|.     .+.+.|
T Consensus       226 ~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l  304 (319)
T d2dg1a1         226 GHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSML  304 (319)
T ss_dssp             SSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEE
T ss_pred             CccceeeeeEcCCCC-EEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeE
Confidence            233589999998654 9999999999999999996555543221     23567889987666777774     235667


Q ss_pred             EEEEeCC
Q psy14258        424 NVAKISD  430 (440)
Q Consensus       424 ~~~~~~g  430 (440)
                      .+++...
T Consensus       305 ~~~~~~~  311 (319)
T d2dg1a1         305 YTVNGFA  311 (319)
T ss_dssp             EEEECSS
T ss_pred             EEEeCCC
Confidence            7777655

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.72  E-value=1.5e-15  Score=141.29  Aligned_cols=228  Identities=11%  Similarity=0.105  Sum_probs=166.2

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC-
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD-  250 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~-  250 (440)
                      ..|++||++| .|.||+++...  ++|++.+.+|...  .+......|++|++++ .++||+++...+.+..++.++.. 
T Consensus        28 ~~~e~iAv~p-dG~l~vt~~~~--~~I~~i~p~g~~~--~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          28 TFLENLASAP-DGTIFVTNHEV--GEIVSITPDGNQQ--IHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CCEEEEEECT-TSCEEEEETTT--TEEEEECTTCCEE--EEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcCCEEECC-CCCEEEEeCCC--CEEEEEeCCCCEE--EEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccc
Confidence            3689999999 69999999986  5999999999744  2333456899999994 56799999888888888876543 


Q ss_pred             -cEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEec-C----------CCCeEEEEeccCCCCCC
Q psy14258        251 -RKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIAN-F----------SRPFAIHIYHRQKQPDA  317 (440)
Q Consensus       251 -~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~-~----------~~p~~~~v~~~~~qp~~  317 (440)
                       ...+........|.++++..+ .+|+++...+.+++++..++........ .          ..+.++...        
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--------  173 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--------  173 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--------
T ss_pred             ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--------
Confidence             233333223567999998765 9999999999999999866543332211 0          012233222        


Q ss_pred             CCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE--
Q psy14258        318 LKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID--  395 (440)
Q Consensus       318 ~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~--  395 (440)
                         +.+|++++...++|++++.+..+...... .......|.++++|++++ ||+++...++|.|++++|.. ..+..  
T Consensus       174 ---~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~~-~~~~~~~  247 (302)
T d2p4oa1         174 ---GNFLYVSNTEKMLLLRIPVDSTDKPGEPE-IFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRST-TIIAQAE  247 (302)
T ss_dssp             ---TTEEEEEETTTTEEEEEEBCTTSCBCCCE-EEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCCE-EEEECGG
T ss_pred             ---CCceeeecCCCCeEEeccccccccccccc-cccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCCE-EEEEecC
Confidence               36899999989999999998763332222 223456799999999765 99999999999999999843 33332  


Q ss_pred             CCCCCeeeEEEe---cCCCcEEEEeCC
Q psy14258        396 TGIYNVEGMAVD---WMANNLYWTDAG  419 (440)
Q Consensus       396 ~~~~~~~glAvD---~~~~~lYwtd~~  419 (440)
                      .++..|.++|++   +.++.||++..+
T Consensus       248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         248 QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            467789999995   356789999754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.66  E-value=3e-14  Score=132.34  Aligned_cols=222  Identities=14%  Similarity=0.056  Sum_probs=164.2

Q ss_pred             ccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC---
Q psy14258        135 DGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT---  206 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~---  206 (440)
                      -|++ |+++.++ ||++    ++|.+.+.+|+... +. .....|.+|++++ +|.||.+++..+  .+.+..+++.   
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~-~~-~~~~~~~gla~~~-dG~l~v~~~~~~--~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI-HA-TVEGKVSGLAFTS-NGDLVATGWNAD--SIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE-EE-ECSSEEEEEEECT-TSCEEEEEECTT--SCEEEEEECTTSC
T ss_pred             CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE-EE-cCCCCcceEEEcC-CCCeEEEecCCc--eEEEEEecccccc
Confidence            4889 9998764 9999    89999999998543 32 2447899999999 689999998764  6666665443   


Q ss_pred             CceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC---------CccCceeeeeEecCEEEEEe
Q psy14258        207 ERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG---------FPVQNLYDITVFENNLFVTS  277 (440)
Q Consensus       207 ~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~---------~~~~~p~gl~~~~~~ly~td  277 (440)
                      ............|+++++| ..+++|+++...+.+.+++.++.........         .....|.|++.+++.+|+++
T Consensus       103 ~~~~~~~~~~~~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~  181 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN  181 (302)
T ss_dssp             EEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred             eeeccccCCccccceeEEc-cCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeec
Confidence            2222222346789999999 6679999999999999999887765544331         12446889999999999999


Q ss_pred             cCCCeEEEEeccCCCce---EEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee-c
Q psy14258        278 WRNQSIIRVNKFNSDDY---ETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI-T  353 (440)
Q Consensus       278 ~~~~~i~~~~~~~g~~~---~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~  353 (440)
                      ...+.|++++.......   ........|.++.+.          +++.|+++....++|.+++.++. .  .....+ .
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d----------~dG~l~va~~~~~~V~~i~p~G~-~--~~~~~~~~  248 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD----------VEGNLYGATHIYNSVVRIAPDRS-T--TIIAQAEQ  248 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB----------TTCCEEEECBTTCCEEEECTTCC-E--EEEECGGG
T ss_pred             CCCCeEEeccccccccccccccccCCCCCcceEEC----------CCCCEEEEEcCCCcEEEECCCCC-E--EEEEecCC
Confidence            99999999987654332   244455567788777          46779999877789999988876 1  112222 3


Q ss_pred             CCCCceEEEEE---cCCCEEEEEECC
Q psy14258        354 DLKRPSVIDYH---EKEEYIYYAELT  376 (440)
Q Consensus       354 ~~~~p~~l~~d---~~~~~vy~~d~~  376 (440)
                      .+..|.+++|+   ++.+.||++...
T Consensus       249 ~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         249 GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            56789999995   466899998643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.64  E-value=3.4e-12  Score=116.44  Aligned_cols=273  Identities=15%  Similarity=0.106  Sum_probs=188.0

Q ss_pred             cEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceE
Q psy14258        146 KIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG  221 (440)
Q Consensus       146 ~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~g  221 (440)
                      .+|++    +.|.+.+++.......+..+ ..|.+|+++|...+||++....  .+|...++........+. ....|.+
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~--~~i~v~d~~t~~~~~~~~-~~~~~~~   78 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHS--NDVSIIDTATNNVIATVP-AGSSPQG   78 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGG--TEEEEEETTTTEEEEEEE-CSSSEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCC--CEEEEEECCCCceeeeee-ccccccc
Confidence            36887    78999998765544333322 5799999999877899998765  589999986543332222 2457999


Q ss_pred             EEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEec
Q psy14258        222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIAN  299 (440)
Q Consensus       222 l~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~~  299 (440)
                      +++++.+..++.+......+...+............  ...|..+++..  ..++.+......+...+..+++....+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccccccceeeecccccceeeeeccc--cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence            999988899999988877888777655433333332  34677777754  48888887777777777766665555555


Q ss_pred             CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC--CC
Q psy14258        300 FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL--TS  377 (440)
Q Consensus       300 ~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~--~~  377 (440)
                      ...|..+....         ...+++++......+........    ...........|.++++++.+..+|++..  ..
T Consensus       157 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         157 GRSPKGIAVTP---------DGTKVYVANFDSMSISVIDTVTN----SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             CSSEEEEEECT---------TSSEEEEEETTTTEEEEEETTTT----EEEEEEECSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             CCCceEEEeec---------cccceeeecccccccccccccce----eeeecccccCCcceeecccccccccccccccee
Confidence            55566665441         13567777665455555554443    22333333456899999999999999864  45


Q ss_pred             CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEee
Q psy14258        378 YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY  438 (440)
Q Consensus       378 ~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l~  438 (440)
                      ++|+..++........+..+ ..|.+||+++.++.||++....++|.+.++...+..+.|-
T Consensus       224 ~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            78999888653332223333 6799999999999999999999999999986535555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.64  E-value=1.2e-13  Score=127.84  Aligned_cols=190  Identities=10%  Similarity=0.081  Sum_probs=137.8

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe--ceEEEEecC
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHY  159 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~d  159 (440)
                      ..|..+|++++.|||+|...++|++.++++.....+            .--..|.+ |.+..+ .|+++  +.|.+.+++
T Consensus        20 gEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~------------~~~~~~~~i~~~~dg-~l~va~~~gl~~~d~~   86 (295)
T d2ghsa1          20 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH------------ALPFMGSALAKISDS-KQLIASDDGLFLRDTA   86 (295)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE------------ECSSCEEEEEEEETT-EEEEEETTEEEEEETT
T ss_pred             eeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE------------ECCCCcEEEEEecCC-CEEEEEeCccEEeecc
Confidence            367779999999999999999999988876543221            11124667 887654 57776  789999999


Q ss_pred             CceEEEEEcC----CCCCceEEEEcCCCCeEEEEEcCCC----CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258        160 MEHCMIAIDL----NLSKPRGIALDPTSGYMFFTKWGAT----RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV  231 (440)
Q Consensus       160 g~~~~~~~~~----~~~~P~~iavd~~~g~lywtd~~~~----~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l  231 (440)
                      +...+.+...    ....|.++++|| .|.||+++....    .+.+.+.. +|..  ..+...+..|+|+++++.++.|
T Consensus        87 tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~~--~~~~~~~~~~Ng~~~s~d~~~l  162 (295)
T d2ghsa1          87 TGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKV--TKLFADISIPNSICFSPDGTTG  162 (295)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEE--EEEEEEESSEEEEEECTTSCEE
T ss_pred             cceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CCcE--EEEeeccCCcceeeecCCCceE
Confidence            7776666542    234689999999 699999975322    23456554 3432  2333467889999999999999


Q ss_pred             EEEeCCCCcEEEEEccCCC------cEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEecc
Q psy14258        232 YWVDTYLDFIDRINYDGTD------RKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKF  289 (440)
Q Consensus       232 y~~d~~~~~i~~~~~dG~~------~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~  289 (440)
                      ||+|...+.|+++++|+..      +..... ......|.|++++.+ +||++.|..+.|.++++.
T Consensus       163 ~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         163 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             EEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence            9999999999999987532      233322 122457999999865 999999988888888863

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.55  E-value=5.2e-11  Score=108.30  Aligned_cols=280  Identities=11%  Similarity=0.062  Sum_probs=185.6

Q ss_pred             cEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEE
Q psy14258         93 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAI  167 (440)
Q Consensus        93 ~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~  167 (440)
                      ..+|+++...+.|..+++....+  +      ..  + .....|.+ |+++.++.||++    ++|.+.++........+
T Consensus         2 ~~~yV~~~~~~~v~v~D~~t~~~--~------~~--i-~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~   70 (301)
T d1l0qa2           2 TFAYIANSESDNISVIDVTSNKV--T------AT--I-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV   70 (301)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEE--E------EE--E-ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             eEEEEEECCCCEEEEEECCCCeE--E------EE--E-ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee
Confidence            35788888888887766543221  1      11  1 22357999 999999999998    68999999865544333


Q ss_pred             cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc
Q psy14258        168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD  247 (440)
Q Consensus       168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d  247 (440)
                      . ....|.++++++....+|.+....  ..+...+.........+. ....|..+++++.+..++.+......+...+..
T Consensus        71 ~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~  146 (301)
T d1l0qa2          71 P-AGSSPQGVAVSPDGKQVYVTNMAS--STLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (301)
T ss_dssp             E-CSSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             e-cccccccccccccccccccccccc--ceeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeecc
Confidence            3 335799999999877888888765  477777776543333332 345788999998999999988777777777655


Q ss_pred             CCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEE
Q psy14258        248 GTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLL  325 (440)
Q Consensus       248 G~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~  325 (440)
                      ..........  ...|..+++..+  .+|++......+........+..........|.++.+..         ....++
T Consensus       147 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~  215 (301)
T d1l0qa2         147 TKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP---------EGTKAY  215 (301)
T ss_dssp             TTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT---------TSSEEE
T ss_pred             ccceeeeccc--CCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccc---------cccccc
Confidence            4433333222  456888887654  888888776666665554443334444444677776652         124455


Q ss_pred             ee--cCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeee
Q psy14258        326 YA--KGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG  403 (440)
Q Consensus       326 ~~--~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~g  403 (440)
                      ++  +...+.|..+++...    .....+.....|.+++|++++++||++....++|...++........+..+ ..|.+
T Consensus       216 v~~~~~~~~~v~v~D~~t~----~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg-~~P~~  290 (301)
T d1l0qa2         216 VTNVDKYFNTVSMIDTGTN----KITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG-KNPYA  290 (301)
T ss_dssp             EEEECSSCCEEEEEETTTT----EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEC
T ss_pred             cccccceeeeeeeeecCCC----eEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCC-CCCcE
Confidence            44  343467888887655    333333344579999999999999999999999999998754332223333 34554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.1e-10  Score=107.84  Aligned_cols=274  Identities=9%  Similarity=0.031  Sum_probs=176.3

Q ss_pred             CcEEEe----ceEEEEecCCceE-E--EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce-eEEe--c
Q psy14258        145 HKIVYP----EAIYFCTHYMEHC-M--IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF-PMVT--H  214 (440)
Q Consensus       145 ~~lY~~----~~I~~~~~dg~~~-~--~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~-~l~~--~  214 (440)
                      ..+|++    ++|.+.+++.... +  ..+. .-..|.+|++.|...+||.+....  ..|...+++..... ++..  .
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~-~~~~v~~la~spDG~~L~v~~~~d--~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEEEEEEEE
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEc-CCCCEeEEEEeCCCCEEEEEECCC--CeEEEEEEeCCCCcEEEeeecc
Confidence            458888    6788888764322 2  2222 337899999999878899998765  47887777654332 2222  2


Q ss_pred             CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeeeEec--CEEEEEecCCCeEEEEeccCC
Q psy14258        215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNS  291 (440)
Q Consensus       215 ~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g  291 (440)
                      ....|.+|++++.+++||+++.....+.....+......... ......|.++.+..  ..+|+++.....|...+....
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            245699999999999999999888888887776554433322 22245677777764  489999988888877776544


Q ss_pred             CceEEE-----e--cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCcee--ee-----eecCCCC
Q psy14258        292 DDYETI-----A--NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQA--IM-----PITDLKR  357 (440)
Q Consensus       292 ~~~~~~-----~--~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~--~~-----~~~~~~~  357 (440)
                      ......     .  ....|..+.+..         ...+++++....+.......+........  .+     .......
T Consensus       161 ~~~~~~~~~~~~~~~g~~p~~i~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (333)
T d1ri6a_         161 GHLVAQDPAEVTTVEGAGPRHMVFHP---------NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  231 (333)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECT---------TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             CcceeeeceeeeeecCCCccEEEEec---------cceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence            333211     1  122455665542         12445555444444444444333111111  11     1122345


Q ss_pred             ceEEEEEcCCCEEEEEECCCCeEEEEecCC--CCeEEEE-ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258        358 PSVIDYHEKEEYIYYAELTSYVIERRKMFG--RGKEVVI-DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       358 p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g--~~~~~~~-~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      |.++++.+.++++|.+....+.+....++.  ...+... ......|.+||+++.++.||+++...++|.++++|.
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             ceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            778999999999999998887776665543  3222221 123367999999999999999999889999998875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.3e-10  Score=107.24  Aligned_cols=297  Identities=10%  Similarity=0.017  Sum_probs=184.8

Q ss_pred             ccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCce--EE
Q psy14258         92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEH--CM  164 (440)
Q Consensus        92 ~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~--~~  164 (440)
                      ++.||++...++.|+..+++....-.+        +.....-..|.+ |+.+.++.||++    +.|.+.+++...  .+
T Consensus         3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~--------~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~   74 (333)
T d1ri6a_           3 KQTVYIASPESQQIHVWNLNHEGALTL--------TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT   74 (333)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEE--------EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             ceEEEEECCCCCcEEEEEEcCCCCeEE--------EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            467999999999998888864321111        111133467899 999999999998    678887776432  22


Q ss_pred             EEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE--ecCccCceEEEEeCCCCEEEEEeCCCCcE
Q psy14258        165 IAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV--THKIVYPYGVTVDFPTKHVYWVDTYLDFI  241 (440)
Q Consensus       165 ~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~--~~~~~~P~gl~vD~~~~~ly~~d~~~~~i  241 (440)
                      .+.. .....|.+|+++|...+||.++...  ..|.....+........  ......|.++++++.+.++|+++.....|
T Consensus        75 ~~~~~~~~~~p~~l~~spDg~~l~v~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i  152 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDHQGQFVFVGSYNA--GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI  152 (333)
T ss_dssp             EEEEEECSSCCSEEEECTTSSEEEEEETTT--TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred             EeeecccCCCceEEEEcCCCCEEeecccCC--CceeeeccccccceecccccCCCccceEEEeeecceeeecccccccee
Confidence            2222 2346799999999888899998765  46766666554433332  23455788999999999999999988888


Q ss_pred             EEEEccCCCcEEEe-----cCCccCceeeeeEecC--EEEEEecCCCeEEEEeccC--CCceE--EEecCC-------CC
Q psy14258        242 DRINYDGTDRKTIR-----KGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFN--SDDYE--TIANFS-------RP  303 (440)
Q Consensus       242 ~~~~~dG~~~~~i~-----~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~--g~~~~--~~~~~~-------~p  303 (440)
                      ...+..........     .......|..+++..+  .+|++....+.........  .....  .+....       .|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (333)
T d1ri6a_         153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  232 (333)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             eEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccc
Confidence            88886544322211     1122457888888654  8888877666544333221  11111  111111       12


Q ss_pred             eEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEE
Q psy14258        304 FAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERR  383 (440)
Q Consensus       304 ~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~  383 (440)
                      .++.+.         ....+++++....+.+..+.++..+..............|.+++|+|++++||+++...+.|...
T Consensus       233 ~~~~~s---------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         233 ADIHIT---------PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             EEEEEC---------TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             eeEEEe---------cccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEE
Confidence            233222         11256777666556666666655422222222233445799999999999999998878877766


Q ss_pred             ecCCC-C-eEEE--EECCCCCeeeEEEec
Q psy14258        384 KMFGR-G-KEVV--IDTGIYNVEGMAVDW  408 (440)
Q Consensus       384 ~~~g~-~-~~~~--~~~~~~~~~glAvD~  408 (440)
                      ++|.. + .+.+  +..| ..|..|++..
T Consensus       304 ~id~~tG~l~~~~~~~~g-~~p~~v~~~~  331 (333)
T d1ri6a_         304 EIVGEQGLLHEKGRYAVG-QGPMWVVVNA  331 (333)
T ss_dssp             EEETTTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred             EEECCCCcEEEEEeccCC-CCCcEEEEEc
Confidence            55542 2 2322  3333 5699998863

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.47  E-value=5.3e-11  Score=109.62  Aligned_cols=236  Identities=14%  Similarity=0.014  Sum_probs=168.8

Q ss_pred             ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE
Q psy14258        174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT  253 (440)
Q Consensus       174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~  253 (440)
                      -+|-.-|+..|.|||+|...  ++|.|.++++...+.+. . -..|.+++++ ..++|+++..  +.|.+++..+...+.
T Consensus        20 gEgp~wd~~~~~l~wvDi~~--~~I~r~d~~~g~~~~~~-~-~~~~~~i~~~-~dg~l~va~~--~gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          20 GEGPTFDPASGTAWWFNILE--RELHELHLASGRKTVHA-L-PFMGSALAKI-SDSKQLIASD--DGLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEEEETTTTEEEEEEGGG--TEEEEEETTTTEEEEEE-C-SSCEEEEEEE-ETTEEEEEET--TEEEEEETTTCCEEE
T ss_pred             eeCCeEECCCCEEEEEECCC--CEEEEEECCCCeEEEEE-C-CCCcEEEEEe-cCCCEEEEEe--CccEEeecccceeeE
Confidence            47888899999999999876  59999999887655432 2 2468899998 5678888864  579999988777776


Q ss_pred             Eec---CCccCceeeeeEecC-EEEEEecC------CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCcee
Q psy14258        254 IRK---GFPVQNLYDITVFEN-NLFVTSWR------NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       254 i~~---~~~~~~p~gl~~~~~-~ly~td~~------~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      +..   +.....|..+.++.+ ++|+++..      .+.+++..  .|+...+..++..|.++.+..         ....
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~~~~~~Ng~~~s~---------d~~~  161 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP---------DGTT  161 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT---------TSCE
T ss_pred             EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec--CCcEEEEeeccCCcceeeecC---------CCce
Confidence            654   222456888888855 89998753      23455543  355455666677788887662         2367


Q ss_pred             EEeecCCccEEEEEEcCCCCCC--c--eeeeeec-CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCC
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTT--E--QAIMPIT-DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGI  398 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~--~--~~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~  398 (440)
                      |+++++..+.|++++++.....  .  ....... ....|.|+++|..+ .||++....+.|.|++++|.....+ ....
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~G~~~~~i-~lP~  239 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIARY-EVPG  239 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEEE-ECSC
T ss_pred             EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCCCcEeeEe-cCCC
Confidence            9999998899999999865211  1  1222222 23468999999865 5999999999999999999655444 4344


Q ss_pred             CCeeeEEEe-cCCCcEEEEeCC-------------CCeEEEEEeC
Q psy14258        399 YNVEGMAVD-WMANNLYWTDAG-------------IGTINVAKIS  429 (440)
Q Consensus       399 ~~~~glAvD-~~~~~lYwtd~~-------------~~~I~~~~~~  429 (440)
                      ..|..+|+. ...+.||+|.+.             .+.|..++++
T Consensus       240 ~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~~  284 (295)
T d2ghsa1         240 KQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIE  284 (295)
T ss_dssp             SBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSSC
T ss_pred             CceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcCC
Confidence            679999996 345689999653             3567766654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.46  E-value=1.8e-10  Score=109.28  Aligned_cols=265  Identities=11%  Similarity=-0.035  Sum_probs=163.6

Q ss_pred             ccccce-eeeecCCcEEEe--ceEEEE--ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC--C
Q psy14258        133 LLDGTE-RFPMVTHKIVYP--EAIYFC--THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD--G  205 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~--~~I~~~--~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d--G  205 (440)
                      -..|.. |++..++.||.+  +.+...  +.++..........-..|..+++++....+|.+........+......  |
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~  118 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence            335678 999999999999  555444  445554433333234679999999988888887654322455544332  2


Q ss_pred             CCce------------eEEe---cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE-E---ecCCccCceeee
Q psy14258        206 TERF------------PMVT---HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT-I---RKGFPVQNLYDI  266 (440)
Q Consensus       206 ~~~~------------~l~~---~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~-i---~~~~~~~~p~gl  266 (440)
                      ....            ....   ..-.+|.++++++.+++||++|.+.++|..++.+...... +   .....-..|.++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i  198 (365)
T d1jofa_         119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             CcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEE
Confidence            1111            1100   1234688999999999999999999999988865433222 1   111124579999


Q ss_pred             eEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC
Q psy14258        267 TVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT  344 (440)
Q Consensus       267 ~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~  344 (440)
                      ++..+  .+|++....+.|..++...++...+.                                   .+..+++...+.
T Consensus       199 ~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~  243 (365)
T d1jofa_         199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-----------------------------------THHSFPLIPPGI  243 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-----------------------------------EEEEEESSCTTC
T ss_pred             EECCCCceEEEeccCCCEEEEEEecCCCceEEE-----------------------------------Eeeeeccccccc
Confidence            99765  89999988888877765433222111                                   001111111100


Q ss_pred             CceeeeeecCCCCceEEEEEcCCCEEEEEECCCC-----eEEEEecC--CCCeE--EEEE--CCCCCeeeEEEec-CCCc
Q psy14258        345 TEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY-----VIERRKMF--GRGKE--VVID--TGIYNVEGMAVDW-MANN  412 (440)
Q Consensus       345 ~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~-----~I~r~~~~--g~~~~--~~~~--~~~~~~~glAvD~-~~~~  412 (440)
                      .............+.+|.+++.+++||+++...+     .|..++.+  |.-.+  .+..  .....|.+|++++ .++.
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~  323 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence            0000001112234668999999999999975433     36555554  32111  1222  2336799999986 5788


Q ss_pred             EEEEeCCCCeEEEEEeCCCe
Q psy14258        413 LYWTDAGIGTINVAKISDFS  432 (440)
Q Consensus       413 lYwtd~~~~~I~~~~~~g~~  432 (440)
                      ||+++...+.|.+++.+++.
T Consensus       324 l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         324 MAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEECSSSCEEEEEEEETTE
T ss_pred             EEEEeCCCCeEEEEEEeCCc
Confidence            99999999999999999854

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=2.4e-09  Score=101.38  Aligned_cols=268  Identities=13%  Similarity=0.039  Sum_probs=156.8

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe------ceEEE
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP------EAIYF  155 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~------~~I~~  155 (440)
                      +..|++++.++.||.++..  .+....++... ...       ..........|.. ++++.++.+|++      ..|..
T Consensus        42 ~s~la~s~d~~~ly~~~~~--~~~~~~i~~~~-~~~-------~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~  111 (365)
T d1jofa_          42 ISWMTFDHERKNIYGAAMK--KWSSFAVKSPT-EIV-------HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYA  111 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBT--EEEEEEEEETT-EEE-------EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred             CCEEEEcCCCCEEEEEeCC--cEEEEEEeCCC-CeE-------EEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEE
Confidence            5679999999999999764  45555554221 000       0111223457999 999999988886      34444


Q ss_pred             Eec--CCceE------------EEE---EcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe-----
Q psy14258        156 CTH--YMEHC------------MIA---IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT-----  213 (440)
Q Consensus       156 ~~~--dg~~~------------~~~---~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~-----  213 (440)
                      ...  ++..-            ...   -...-.+|++++++|..++||.++.+.+  +|.+.+.+.........     
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d--~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T d1jofa_         112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN--KLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTSCEEEEEEEECS
T ss_pred             eEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCC--EEEEEEccCCCceeeccceeec
Confidence            322  12111            111   0122347899999998889999998874  88888776554433322     


Q ss_pred             cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-C-----------------CccCceeeeeEe--cCEE
Q psy14258        214 HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-G-----------------FPVQNLYDITVF--ENNL  273 (440)
Q Consensus       214 ~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~-----------------~~~~~p~gl~~~--~~~l  273 (440)
                      .....|.++++++.+..+|++....+.|..++++......+.. +                 .....|..|++.  +.+|
T Consensus       190 ~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence            1245799999999999999999999999999987654322211 0                 001123445554  2366


Q ss_pred             EEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCce---eee
Q psy14258        274 FVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQ---AIM  350 (440)
Q Consensus       274 y~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~---~~~  350 (440)
                      |++.+..+..        .          .                            ..|..+.++..+.-..   ...
T Consensus       270 yvsnr~~~~~--------~----------~----------------------------~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         270 FASSRANKFE--------L----------Q----------------------------GYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             EEEEEESSTT--------S----------C----------------------------CEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEcccCCCc--------c----------c----------------------------eEEEEEEecCCCceeeEeEeeE
Confidence            6665432110        0          0                            0111111111100000   001


Q ss_pred             eecCCCCceEEEEEc-CCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCe-eeEEEec
Q psy14258        351 PITDLKRPSVIDYHE-KEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNV-EGMAVDW  408 (440)
Q Consensus       351 ~~~~~~~p~~l~~d~-~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~-~glAvD~  408 (440)
                      .......|.++++++ .+++||+++..++.|...+.++...+.+....+..| -++.+=|
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p~~~~~~~w  363 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIW  363 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEEEEEEE
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEECCCCCCCeEEEe
Confidence            111235799999997 678899999999999988887765555544333333 3444443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.97  E-value=1e-07  Score=92.34  Aligned_cols=247  Identities=13%  Similarity=0.124  Sum_probs=153.2

Q ss_pred             eeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcC-C-------CCCceEEEEcCC---CCeEEEEEcC
Q psy14258        129 LERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDL-N-------LSKPRGIALDPT---SGYMFFTKWG  192 (440)
Q Consensus       129 ~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~-~-------~~~P~~iavd~~---~g~lywtd~~  192 (440)
                      +.+++..|.+ |+.+.++ ||++    ++|.+.+.++...+.+... .       ..-.-+||+||.   ++++|++-..
T Consensus        22 ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~  100 (450)
T d1crua_          22 ILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (450)
T ss_dssp             EECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             EECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEec
Confidence            4578999999 9998765 9998    6899998777666555431 1       122357999983   7899987421


Q ss_pred             C----------CCCcEEEEeCCCCCc-----eeEEec----CccCceEEEEeCCCCEEEEEeCC----------------
Q psy14258        193 A----------TRPMLERSLLDGTER-----FPMVTH----KIVYPYGVTVDFPTKHVYWVDTY----------------  237 (440)
Q Consensus       193 ~----------~~~~I~r~~~dG~~~-----~~l~~~----~~~~P~gl~vD~~~~~ly~~d~~----------------  237 (440)
                      .          ....+.|...++...     +.++..    ....-..|++++ .++||++-..                
T Consensus       101 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~~~~~~~  179 (450)
T d1crua_         101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQ  179 (450)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTT
T ss_pred             CCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCcccccccccccccc
Confidence            0          012355666555432     222221    123456799985 6689998532                


Q ss_pred             ----------------CCcEEEEEccCCCc-----------EEEecCCccCceeeeeEe-cCEEEEEecCC---CeEEEE
Q psy14258        238 ----------------LDFIDRINYDGTDR-----------KTIRKGFPVQNLYDITVF-ENNLFVTSWRN---QSIIRV  286 (440)
Q Consensus       238 ----------------~~~i~~~~~dG~~~-----------~~i~~~~~~~~p~gl~~~-~~~ly~td~~~---~~i~~~  286 (440)
                                      .++|.+++.||+..           ++...+  +++|++++++ .+.||.+|.+.   ..|..+
T Consensus       180 ~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G--~RNp~g~~~~p~g~l~~~e~G~~~~dEln~i  257 (450)
T d1crua_         180 HTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG--HRNPQGLAFTPNGKLLQSEQGPNSDDEINLI  257 (450)
T ss_dssp             CCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC--CSEEEEEEECTTSCEEEEEECSSSCEEEEEC
T ss_pred             cCcccccccccccccccCceEEeeccccccccccccccccceEEEec--cccccceeecccceeeecccccccccccccc
Confidence                            36899999988743           334445  8999999998 45999998643   234443


Q ss_pred             eccCCCce-----------------------------------------EEEe---------------------------
Q psy14258        287 NKFNSDDY-----------------------------------------ETIA---------------------------  298 (440)
Q Consensus       287 ~~~~g~~~-----------------------------------------~~~~---------------------------  298 (440)
                      .+  |+..                                         .+..                           
T Consensus       258 ~~--G~nYGWP~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  335 (450)
T d1crua_         258 VK--GGNYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYND  335 (450)
T ss_dssp             CT--TCBCCTTTCSSSSSCSSCCEECGGGSSCTTCCCCCSTTSSCCTTCCEECGGGCCCSSBCCCSEEECCCCTTCCSCC
T ss_pred             cc--ccccCCceecCCcCCCCcccCCcccccccccccccccccccccCCCcccccccccccccccccccccccccccccc
Confidence            21  1100                                         0000                           


Q ss_pred             -----------cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc--eeeeeecCCCCceEEEEEc
Q psy14258        299 -----------NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE--QAIMPITDLKRPSVIDYHE  365 (440)
Q Consensus       299 -----------~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~--~~~~~~~~~~~p~~l~~d~  365 (440)
                                 ....|.++.+|....+.-+ .-++.|++++-..+.|.++.++..+...  +.........+|++|++.+
T Consensus       336 ~~~~~~~~~~~Psiapsg~~fY~g~~~~fp-~~~g~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~~~~~~R~rdv~~gp  414 (450)
T d1crua_         336 PTCGEMTYICWPTVAPSSAYVYKGGKKAIT-GWENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASP  414 (450)
T ss_dssp             GGGTTCGGGGSSCCCBCCCEECCCCTTCCT-TCTTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECT
T ss_pred             cccCCCceeecccccCccceEecCCcccCc-ccCCCEEEEECcCCEEEEEEEcCCCceeeEEEEeccCCCCCceEEEECC
Confidence                       0001233333322111100 1246677887777899999998774432  2233444556899999999


Q ss_pred             CCCEEEEEECCCCeEEE
Q psy14258        366 KEEYIYYAELTSYVIER  382 (440)
Q Consensus       366 ~~~~vy~~d~~~~~I~r  382 (440)
                      ++..+|+++...+.|+|
T Consensus       415 DGs~lyv~~d~~G~i~r  431 (450)
T d1crua_         415 DGNVLYVLTDTAGNVQK  431 (450)
T ss_dssp             TSSCEEEEECSSCCEEC
T ss_pred             CCCEEEEEECCCCCEec
Confidence            87678999999999998

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.86  E-value=1.7e-05  Score=73.41  Aligned_cols=304  Identities=8%  Similarity=-0.095  Sum_probs=163.8

Q ss_pred             EEEEEeeecccEEEEEEcCC----CCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-------
Q psy14258         83 AIYFCTHYMEHCMIAIDLNL----SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-------  150 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~----~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-------  150 (440)
                      +..+++.+..+++|.++...    ..++.++..  ..+.+      .  .+  ....+.+ ++.+.++.||++       
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~--tg~~~------~--~~--~~~~~~~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAG--SGSIL------G--HV--NGGFLPNPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECC--CCCEE------E--EE--eCCCCccEEEcCCCCEEEEEeecCCcc
Confidence            56677788888998886543    234443322  21111      0  01  2234447 999999999987       


Q ss_pred             ------ceEEEEecCCceEEEEEcC-------CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCcc
Q psy14258        151 ------EAIYFCTHYMEHCMIAIDL-------NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV  217 (440)
Q Consensus       151 ------~~I~~~~~dg~~~~~~~~~-------~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~  217 (440)
                            +.|.+.+.........+..       ....|.++++.+..+.+|...+... ..+...+.....  .+  ....
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-~~~~~~~~~~~~--~~--~~~~  165 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG-PAVGLVVQGGSS--DD--QLLS  165 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC-CceEEeeccCCe--EE--EEec
Confidence                  3467777765443322221       1245788888887777777766543 344444443322  12  1234


Q ss_pred             CceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC-----CccCceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258        218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-----FPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSD  292 (440)
Q Consensus       218 ~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~-----~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~  292 (440)
                      .|.++.+.+.+..+|++....+.+..++............     .....+..+...++..++.....+.+..++..++.
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            5788899888999999999889998888766544332221     01122334444455444443445566655554333


Q ss_pred             ceEEEecCCCCeEE-EEe-cc-CCCCCCCCCc-eeE---------EeecCCccEEEEEEcCCCCCCceeeeeecCCCCce
Q psy14258        293 DYETIANFSRPFAI-HIY-HR-QKQPDALKPS-TFL---------LYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPS  359 (440)
Q Consensus       293 ~~~~~~~~~~p~~~-~v~-~~-~~qp~~~~~~-~~l---------~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~  359 (440)
                      ...+......+... ... .+ ..++....++ ..+         ++.....+.|..++....    .....+..-..|.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~----~~~~~~~~~~~~~  321 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG----QTSSQISLGHDVD  321 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC----cEEEEecCCCCee
Confidence            22211100000000 000 00 0000000011 112         222222356666665444    2233333345788


Q ss_pred             EEEEEcCCCE-EEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEe
Q psy14258        360 VIDYHEKEEY-IYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVD  407 (440)
Q Consensus       360 ~l~~d~~~~~-vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD  407 (440)
                      +++|.+++++ +|++....+.|+..+.........+...-..|.+|++.
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            9999998876 56778888999999987544333333223679999987

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.73  E-value=1.3e-06  Score=81.11  Aligned_cols=203  Identities=13%  Similarity=0.150  Sum_probs=120.1

Q ss_pred             CCceEEEEcCCCCeEEEEEcC----------CCCCcEEEEeCCCCCceeE---EecC-----ccCceEEEEeC---CCCE
Q psy14258        172 SKPRGIALDPTSGYMFFTKWG----------ATRPMLERSLLDGTERFPM---VTHK-----IVYPYGVTVDF---PTKH  230 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~----------~~~~~I~r~~~dG~~~~~l---~~~~-----~~~P~gl~vD~---~~~~  230 (440)
                      .-|+.|+++| .|.+|.+...          ...++|...+++.......   +...     ...|.||.+-.   ...+
T Consensus        35 ~G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~  113 (340)
T d1v04a_          35 NGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  113 (340)
T ss_dssp             SCCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEE
T ss_pred             CCcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEE
Confidence            4577777776 5777766421          0025777777765433321   1111     24799998721   2337


Q ss_pred             EEEEeC--CCCcEEEEEccCCC--cEEEec--CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEe-cCCC
Q psy14258        231 VYWVDT--YLDFIDRINYDGTD--RKTIRK--GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIA-NFSR  302 (440)
Q Consensus       231 ly~~d~--~~~~i~~~~~dG~~--~~~i~~--~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~-~~~~  302 (440)
                      ||++++  ...+|+...++-..  ...+..  ...+..|..+++.++ .+|+|+.....       .+ ....+. -+..
T Consensus       114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~-------~~-~~~~~e~~~~~  185 (340)
T d1v04a_         114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFI-------DP-YLKSWEMHLGL  185 (340)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCC-------SH-HHHHHHHHTTC
T ss_pred             EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCc-------Ch-hhhhhhHhhcC
Confidence            899986  34577777765333  222221  334678999997765 99999742110       00 000000 0011


Q ss_pred             CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEE
Q psy14258        303 PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIER  382 (440)
Q Consensus       303 p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r  382 (440)
                      |.                 +++++.+.            .    ...+...++..|.||+++++++.||++++..++|++
T Consensus       186 ~~-----------------g~v~~~~~------------~----~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~  232 (340)
T d1v04a_         186 AW-----------------SFVTYYSP------------N----DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHV  232 (340)
T ss_dssp             CC-----------------EEEEEECS------------S----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             Cc-----------------eeEEEEcC------------C----ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEE
Confidence            11                 22222222            2    233445567789999999999999999999999999


Q ss_pred             EecCCCCe---EEEEECCCCCeeeEEEecCCCcEEEEe
Q psy14258        383 RKMFGRGK---EVVIDTGIYNVEGMAVDWMANNLYWTD  417 (440)
Q Consensus       383 ~~~~g~~~---~~~~~~~~~~~~glAvD~~~~~lYwtd  417 (440)
                      ..+++.+.   ..++.. -..|++|.+|..++.+|.+-
T Consensus       233 y~~~~~~~l~~~~~~~l-~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         233 YEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEE
T ss_pred             EEeCCCcccceEEEecC-CCCCCccEEecCCCEEEEEE
Confidence            99987542   122222 25699999998788887773

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.73  E-value=0.00012  Score=69.40  Aligned_cols=319  Identities=8%  Similarity=-0.003  Sum_probs=189.0

Q ss_pred             cEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEc
Q psy14258         93 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAID  168 (440)
Q Consensus        93 ~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~  168 (440)
                      +.++++....++|...++....  .+      ..  +.. ...|.+ |+.+.++.||.+   +.|.+.+++......+..
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~--~~------~~--l~~-g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~  100 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKK--IV------KV--IDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE  100 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCS--EE------EE--EEC-CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCc--EE------EE--EeC-CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence            4455777777877766554322  11      11  222 347999 999999999988   689999988655433222


Q ss_pred             -CCCCCceEEEEcCC----CCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-----------CccCceEEEEeCCCCEEE
Q psy14258        169 -LNLSKPRGIALDPT----SGYMFFTKWGATRPMLERSLLDGTERFPMVTH-----------KIVYPYGVTVDFPTKHVY  232 (440)
Q Consensus       169 -~~~~~P~~iavd~~----~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-----------~~~~P~gl~vD~~~~~ly  232 (440)
                       .....|.++++.+.    ..+||.+....  ..+...+............           ....+..++..+....++
T Consensus       101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~  178 (426)
T d1hzua2         101 IKIGIEARSVESSKFKGYEDRYTIAGAYWP--PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  178 (426)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEES--SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EeCCCCCcceEEeeeecCCCCEEEEeecCC--CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence             23356889988763    45788887664  4677766665443333221           122345677777888899


Q ss_pred             EEeCCCCcEEEEEccCCC-cEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCC--CCeE-E
Q psy14258        233 WVDTYLDFIDRINYDGTD-RKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFS--RPFA-I  306 (440)
Q Consensus       233 ~~d~~~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~--~p~~-~  306 (440)
                      ++....+.+..+...... ......+ .-..|.++++..+  ++|.+....+.+..++..+++.........  .+.. .
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         179 VNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             EEETTTTEEEEEECSSSSSCEEEEEE-CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred             EecCCCCeEEEEEeccccceeeEEec-cCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence            999888888888764433 2222111 1467899998644  888998888888888887776665443221  2221 1


Q ss_pred             EEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC---CceeeeeecC-CCCceEEEEEcCCCEEEEEEC------C
Q psy14258        307 HIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT---TEQAIMPITD-LKRPSVIDYHEKEEYIYYAEL------T  376 (440)
Q Consensus       307 ~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~---~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~------~  376 (440)
                      ....+..       ......+....+.+..+.......   .......+.+ ...+.+++|.|.+.+|+++..      .
T Consensus       258 ~~~~~~~-------~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~  330 (426)
T d1hzua2         258 NFVHPKY-------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  330 (426)
T ss_dssp             EEEETTT-------EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHH
T ss_pred             eeecCCC-------CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCccc
Confidence            1121110       111222222334554444333210   0112222333 346889999999998876432      2


Q ss_pred             CCeEEEEecCC-CCeEEEEE--------CCCCCeeeEEEecCCCcEEEEe----CCCCeEEEEEeCCCe
Q psy14258        377 SYVIERRKMFG-RGKEVVID--------TGIYNVEGMAVDWMANNLYWTD----AGIGTINVAKISDFS  432 (440)
Q Consensus       377 ~~~I~r~~~~g-~~~~~~~~--------~~~~~~~glAvD~~~~~lYwtd----~~~~~I~~~~~~g~~  432 (440)
                      .++|...++.. .....+..        .+...+..+++-+.++.||++-    ...++|.+.+.....
T Consensus       331 ~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         331 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             CCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            35788888753 22223321        2233466788999999999873    346789998877633

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.73  E-value=7.2e-06  Score=74.53  Aligned_cols=281  Identities=9%  Similarity=-0.046  Sum_probs=143.0

Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceEEEEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHCMIAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH  214 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~  214 (440)
                      |+...++.|+.+   ++|.+.|++......-+. ..-..|.+|++.|...+||++....  +.|...+++..........
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~--~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY--GDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEES
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCC--CcEEEEeCccCeeeeeecc
Confidence            555555555555   789999998665432222 2345799999999878899998665  5899999875433222221


Q ss_pred             C------ccCceEEEEeCCCCEEEEEeCC-----------CCcEEEEEcc-CCCcEEEecCCccCceeeeeEec-CEEEE
Q psy14258        215 K------IVYPYGVTVDFPTKHVYWVDTY-----------LDFIDRINYD-GTDRKTIRKGFPVQNLYDITVFE-NNLFV  275 (440)
Q Consensus       215 ~------~~~P~gl~vD~~~~~ly~~d~~-----------~~~i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~-~~ly~  275 (440)
                      .      ...|.++++++.+.+||++...           ...+..++.. +.....+.....-.....+.... +.+|+
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            1      2368899999999999998642           2234444332 21111111100001112222223 36666


Q ss_pred             EecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCC-Cc---------------eeEEeecCCccEEEEEEc
Q psy14258        276 TSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALK-PS---------------TFLLYAKGKPAIIKGLTF  339 (440)
Q Consensus       276 td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~-~~---------------~~l~~~~~~~~~I~~i~~  339 (440)
                      ++   ..+..++..+++....+.....|..+........-.... .+               ...+.+......+..+++
T Consensus       161 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         161 AG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             ES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             eC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            54   334445555555444433222222211110000000000 00               000011111123334443


Q ss_pred             CCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC
Q psy14258        340 KRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG  419 (440)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~  419 (440)
                      ... .. .............++++.+.++.+....  .+.|...++........+..+ ..|.+||+.+.++.||.+.. 
T Consensus       238 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~d~~~~~~~~~~~~~-~~~~~va~s~DG~~l~v~~~-  311 (346)
T d1jmxb_         238 KTG-KT-HTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGT-  311 (346)
T ss_dssp             TTC-CE-EEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESB-
T ss_pred             CCC-ce-EEEEeecccceeEEEEEeCCCCEEEEec--CCeEEEEECCCCcEEEEEcCC-CCEEEEEEcCCCCEEEEEeC-
Confidence            332 10 0111111222344566666666554432  457777777643332223333 57999999999999999875 


Q ss_pred             CCeEEEEEeCC
Q psy14258        420 IGTINVAKISD  430 (440)
Q Consensus       420 ~~~I~~~~~~g  430 (440)
                      .+.|.+.++.-
T Consensus       312 d~~v~v~D~~t  322 (346)
T d1jmxb_         312 FNDLAVFNPDT  322 (346)
T ss_dssp             SSEEEEEETTT
T ss_pred             CCcEEEEECcc
Confidence            57899999875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.72  E-value=3e-05  Score=69.92  Aligned_cols=272  Identities=7%  Similarity=-0.046  Sum_probs=150.9

Q ss_pred             ceEEEEecCCceEEEEEc--CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-----ccCceEEE
Q psy14258        151 EAIYFCTHYMEHCMIAID--LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-----IVYPYGVT  223 (440)
Q Consensus       151 ~~I~~~~~dg~~~~~~~~--~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-----~~~P~gl~  223 (440)
                      ++|.+.|+........+.  .....|.+|++.|...+||.+....  +.|...++.......-+...     ...|.+++
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~--~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~   88 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS--ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT--TEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC--CeEEEEECCCCcEEEEEecCCCcccccceeeEE
Confidence            688898888655443333  2235799999999777899987654  58999998654332222211     34678999


Q ss_pred             EeCCCCEEEEEeCC-----------CCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccC
Q psy14258        224 VDFPTKHVYWVDTY-----------LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFN  290 (440)
Q Consensus       224 vD~~~~~ly~~d~~-----------~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~  290 (440)
                      +.+.++++|++...           ...+...+............  ...|.++++..+  .+|.++   +.+..++..+
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~---~~~~~~d~~~  163 (337)
T d1pbyb_          89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGLG---RDLHVMDPEA  163 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEES---SSEEEEETTT
T ss_pred             EcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc--cCCceEEEEcCCCCEEEEEc---CCcceeeeec
Confidence            99999999998642           23444444433322222222  346778887754  788764   3344556655


Q ss_pred             CCceEEEecCCCCeE--EEEeccCCCCCCCCCc--eeEEee----------cCCccEEEEEEcCCCCCCceeeeeecCCC
Q psy14258        291 SDDYETIANFSRPFA--IHIYHRQKQPDALKPS--TFLLYA----------KGKPAIIKGLTFKRDGTTEQAIMPITDLK  356 (440)
Q Consensus       291 g~~~~~~~~~~~p~~--~~v~~~~~qp~~~~~~--~~l~~~----------~~~~~~I~~i~~~~~~~~~~~~~~~~~~~  356 (440)
                      ++....+.....+..  .........+......  ......          ......+..+++... ... .......-.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~  241 (337)
T d1pbyb_         164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG-EMA-MREVRIMDV  241 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC-CEE-EEEEEECSS
T ss_pred             CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC-cEE-EEEecCCCc
Confidence            554443321111111  0000000000000000  000000          001123444444332 110 111112223


Q ss_pred             CceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEE
Q psy14258        357 RPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKV  436 (440)
Q Consensus       357 ~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~  436 (440)
                      .+..+++.+....+|.++   +.|...++........+..+ ..|.+||+.+.++.||.+.. .++|.+.++...+..+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dG~~l~v~~~-~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         242 FYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGA-LGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             CEEEEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESB-SSEEEEEETTTCCEEEE
T ss_pred             ceEEEEecccceEEEEcc---ccEEEEECCCCcEEEEEcCC-CCEEEEEECCCCCEEEEEeC-CCcEEEEECCCCcEEEE
Confidence            566788888888888775   67888888754433333332 57899999999999998864 56799999875343333

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.71  E-value=1.8e-06  Score=83.37  Aligned_cols=154  Identities=10%  Similarity=-0.054  Sum_probs=100.6

Q ss_pred             cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccce-eeccccccce-eeee---cCCcEEEe--
Q psy14258         78 TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM-LERSLLDGTE-RFPM---VTHKIVYP--  150 (440)
Q Consensus        78 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~p~~-avD~---~~~~lY~~--  150 (440)
                      +..  |.+|++.+. ++||+++...++|+++..+......+...   +.+. ...+-...-+ |+|+   .++.||++  
T Consensus        26 L~~--P~~la~~pd-g~llVter~~G~i~~v~~~~g~~~~i~~~---~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt   99 (450)
T d1crua_          26 LNK--PHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQV---PEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (450)
T ss_dssp             CSS--EEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEEC---TTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCC--ceEEEEeCC-CeEEEEEecCCEEEEEECCCCcEeecccC---CccccccCCCCceeeEEeCCCCccCCEEEEEEe
Confidence            555  999999986 78999998778888876554443322111   1110 1112233457 8876   46778885  


Q ss_pred             --------------ceEEEEecCCce-----EEEEEc----CCCCCceEEEEcCCCCeEEEEEcCC--------------
Q psy14258        151 --------------EAIYFCTHYMEH-----CMIAID----LNLSKPRGIALDPTSGYMFFTKWGA--------------  193 (440)
Q Consensus       151 --------------~~I~~~~~dg~~-----~~~~~~----~~~~~P~~iavd~~~g~lywtd~~~--------------  193 (440)
                                    ..+.+...++..     .+.++.    ..-+.-..|+++| .|+||++-...              
T Consensus       100 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~~~~~~  178 (450)
T d1crua_         100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQA  178 (450)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCT
T ss_pred             cCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCccccccccccccc
Confidence                          124444444321     223322    2335677999999 68999995421              


Q ss_pred             ----------------CCCcEEEEeCCCCCc----------eeEEecCccCceEEEEeCCCCEEEEEeCCCC
Q psy14258        194 ----------------TRPMLERSLLDGTER----------FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD  239 (440)
Q Consensus       194 ----------------~~~~I~r~~~dG~~~----------~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~  239 (440)
                                      ..++|.|.+.||+..          .++...++..|.||++|+ +++||.+|.+..
T Consensus       179 ~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~G~~  249 (450)
T d1crua_         179 QHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGPN  249 (450)
T ss_dssp             TCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECSS
T ss_pred             ccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeecccccc
Confidence                            036899999999753          357778899999999996 789999997654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.69  E-value=5e-05  Score=70.07  Aligned_cols=281  Identities=6%  Similarity=-0.065  Sum_probs=153.2

Q ss_pred             eeeecCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-------CCcEEEEeC
Q psy14258        139 RFPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-------RPMLERSLL  203 (440)
Q Consensus       139 avD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-------~~~I~r~~~  203 (440)
                      |+-+.++.+|++        .++.+.+.+.......+.  ...+.++++.|...+||++.....       ...|...+.
T Consensus        27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~--~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~  104 (373)
T d2madh_          27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN--GGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             ccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe--CCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEEC
Confidence            788888889887        357777755433222222  334558999998889999875431       134666666


Q ss_pred             CCCCceeEEec-------CccCceEEEEeCCCCEEEEEeCCC-CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEE
Q psy14258        204 DGTERFPMVTH-------KIVYPYGVTVDFPTKHVYWVDTYL-DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNL  273 (440)
Q Consensus       204 dG~~~~~l~~~-------~~~~P~gl~vD~~~~~ly~~d~~~-~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~l  273 (440)
                      ........+..       ....|.++++.+.+..+|+..... +.+...+....  +....   ...|.++++.  +..+
T Consensus       105 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~s~~g~~~  179 (373)
T d2madh_         105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS--SDDQL---LSSPTCYHIHPGAPST  179 (373)
T ss_pred             CCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC--eEEEE---eccceeEEEecCCCcE
Confidence            54332211111       133577888888888888766433 34444443332  22222   2345555554  4588


Q ss_pred             EEEecCCCeEEEEeccCCCceEEEecCC-----CCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCC---
Q psy14258        274 FVTSWRNQSIIRVNKFNSDDYETIANFS-----RPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGT---  344 (440)
Q Consensus       274 y~td~~~~~i~~~~~~~g~~~~~~~~~~-----~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~---  344 (440)
                      |++....+.+..++..+++.........     .+.......        .++ .+++.+..  +.+..++......   
T Consensus       180 ~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~v~~~~~~~~~~~~~  249 (373)
T d2madh_         180 FYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQA--------NKSGRIVWPVYS--GKILQADISAAGATNK  249 (373)
T ss_pred             EEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEE--------CCCceEEEecCC--ceEEEEEcCCCeEEEE
Confidence            9998888998888876655444322111     122111110        111 22333322  4454444433300   


Q ss_pred             ------CceeeeeecCCCCceEEEEEcCCCEEEEEEC---------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258        345 ------TEQAIMPITDLKRPSVIDYHEKEEYIYYAEL---------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       345 ------~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~---------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~  409 (440)
                            ..........-..+..+++.+.+..+|++..         ..+.|...+.........+.. -..|.+|++.+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~-~~~~~~~a~spD  328 (373)
T d2madh_         250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQD  328 (373)
T ss_pred             EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC-CCCeeEEEECCC
Confidence                  0000000001113345677777777776643         345666666654332222222 257899999888


Q ss_pred             CCc-EEEEeCCCCeEEEEEeCCCeeeEEe
Q psy14258        410 ANN-LYWTDAGIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       410 ~~~-lYwtd~~~~~I~~~~~~g~~~~~~l  437 (440)
                      ++. ||.+....++|.+.++...+..+.|
T Consensus       329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         329 GGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            875 6778888999999998743444444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.65  E-value=0.00021  Score=67.63  Aligned_cols=330  Identities=7%  Similarity=-0.026  Sum_probs=182.3

Q ss_pred             eEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccc
Q psy14258         48 THLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRP  127 (440)
Q Consensus        48 ~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v  127 (440)
                      .++++....   ++|..+++......-.++.+.. +.+++|++.+++||.+..+ +.|...+++.......        .
T Consensus        33 ~~~V~~~~d---g~v~vwD~~t~~~~~~l~~g~~-~~~vafSPDGk~l~~~~~d-~~v~vwd~~t~~~~~~--------~   99 (426)
T d1hzua2          33 LFSVTLRDA---GQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKV--------A   99 (426)
T ss_dssp             EEEEEETTT---TEEEEEETTTCSEEEEEECCSS-EEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEE--------E
T ss_pred             EEEEEEcCC---CEEEEEECCCCcEEEEEeCCCC-eeEEEECCCCCEEEEEeCC-CCEEEEEccCCceeEE--------E
Confidence            444555433   3499999987665544444432 9999999999999988754 5677666654432211        0


Q ss_pred             eeeccccccce-eee----ecCCcEEEe----ceEEEEecCCceEEEEEcC-----------CCCCceEEEEcCCCCeEE
Q psy14258        128 MLERSLLDGTE-RFP----MVTHKIVYP----EAIYFCTHYMEHCMIAIDL-----------NLSKPRGIALDPTSGYMF  187 (440)
Q Consensus       128 ~~~~~~~~p~~-avD----~~~~~lY~~----~~I~~~~~dg~~~~~~~~~-----------~~~~P~~iavd~~~g~ly  187 (440)
                      .+ .....|.+ ++.    +.++.||++    +.+...+........+...           ....+..++..+....++
T Consensus       100 ~i-~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~  178 (426)
T d1hzua2         100 EI-KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  178 (426)
T ss_dssp             EE-ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EE-eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence            01 12234555 554    457778887    6677777776554433321           123456778888777778


Q ss_pred             EEEcCCCCCcEEEEeCCCCCceeE-EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCcee-
Q psy14258        188 FTKWGATRPMLERSLLDGTERFPM-VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLY-  264 (440)
Q Consensus       188 wtd~~~~~~~I~r~~~dG~~~~~l-~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~-  264 (440)
                      ++..+.  ..|............+ .......|.++++++.++++|.+....+.+..++........... +. ..+|. 
T Consensus       179 ~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  255 (426)
T d1hzua2         179 VNVKET--GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK-TPHPGR  255 (426)
T ss_dssp             EEETTT--TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS-CCCCSC
T ss_pred             EecCCC--CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC-cccccc
Confidence            877765  4676666544332222 222346799999999999999999888888888765444333322 22 22322 


Q ss_pred             eeeE--ecC-EEEE-EecCCCeEEEEeccCC-------CceEEEec-CCCCeEEEEeccCCCCCCCCCc-eeEEeecCC-
Q psy14258        265 DITV--FEN-NLFV-TSWRNQSIIRVNKFNS-------DDYETIAN-FSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK-  330 (440)
Q Consensus       265 gl~~--~~~-~ly~-td~~~~~i~~~~~~~g-------~~~~~~~~-~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~-  330 (440)
                      .+.+  .+. .++. +...++.+........       +....+.. ...+..+.+.          |+ .+|+++... 
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~s----------Pdg~~l~v~~~~~  325 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH----------PKSSHLYVDTTFN  325 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECC----------TTCSEEEECCTTC
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcC----------CCCceEEEeecCC
Confidence            1111  122 2222 2223444444433221       22222222 1234444322          44 345443211 


Q ss_pred             -----ccEEEEEEcCCCCCCceeeeeec-------CCCCceEEEEEcCCCEEEEEE----CCCCeEEEEecCCCCeEEEE
Q psy14258        331 -----PAIIKGLTFKRDGTTEQAIMPIT-------DLKRPSVIDYHEKEEYIYYAE----LTSYVIERRKMFGRGKEVVI  394 (440)
Q Consensus       331 -----~~~I~~i~~~~~~~~~~~~~~~~-------~~~~p~~l~~d~~~~~vy~~d----~~~~~I~r~~~~g~~~~~~~  394 (440)
                           ...|..+++... ......+++.       +..+...++|.|+++++|++-    ...++|...+........++
T Consensus       326 ~s~~~~~tv~vwd~~t~-~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         326 PDARISQSVAVFDLKNL-DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             SSHHHHTCEEEEETTCT-TSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred             CCcccCCEEEEEECCCC-CcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE
Confidence                 246788887654 2211222221       122455788999999999874    34677888877653332233


Q ss_pred             E-CCCCCeeeEE
Q psy14258        395 D-TGIYNVEGMA  405 (440)
Q Consensus       395 ~-~~~~~~~glA  405 (440)
                      . ..+..|.|..
T Consensus       405 ~~~~~~tp~Gk~  416 (426)
T d1hzua2         405 KDPRLITPTGKF  416 (426)
T ss_dssp             CCTTCCSEEEEE
T ss_pred             CCCCccCCCceE
Confidence            2 2344676654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=3e-05  Score=71.99  Aligned_cols=283  Identities=6%  Similarity=-0.091  Sum_probs=159.2

Q ss_pred             eeeecCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-------CCcEEEEeC
Q psy14258        139 RFPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-------RPMLERSLL  203 (440)
Q Consensus       139 avD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-------~~~I~r~~~  203 (440)
                      |..+.++..|++        .++.+.+.++......+.... .| ++++.|....||+++....       ...|...+.
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CC-cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence            666677777766        458888887766544443333 24 7999998888999875211       124777777


Q ss_pred             CCCCceeEEec-------CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEE
Q psy14258        204 DGTERFPMVTH-------KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVT  276 (440)
Q Consensus       204 dG~~~~~l~~~-------~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~t  276 (440)
                      ........+..       ....|.++++.+.+++||+++...+.+..+++..........   ......+.-.+...+.+
T Consensus       104 ~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~v~  180 (368)
T d1mdah_         104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK---SASCFHIHPGAAATHYL  180 (368)
T ss_dssp             TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE---CSSCCCCEEEETTEEEC
T ss_pred             CCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee---ccCcceEccCCCceEEE
Confidence            65433222221       134688999999999999999888899999987654433332   11222233334444555


Q ss_pred             ecCCCeEEEEeccCCCceEEEe--cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC
Q psy14258        277 SWRNQSIIRVNKFNSDDYETIA--NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD  354 (440)
Q Consensus       277 d~~~~~i~~~~~~~g~~~~~~~--~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~  354 (440)
                      ....+++..+....+.......  ....+.....     ++....+.+.+++...  +.++.++++.. ... .......
T Consensus       181 ~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~--~~v~~~~~~~~-~~~-~~~~~~~  251 (368)
T d1mdah_         181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS-----QAAQANYPGMLVWAVA--SSILQGDIPAA-GAT-MKAAIDG  251 (368)
T ss_dssp             CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS-----CCEEETTTTEEEECBS--SCCEEEECCSS-CCE-EECCCCS
T ss_pred             EcCCCCEEEEEecCCceeeeeeecccccccccce-----eecccccCcEEEEecC--CCEEEEeecCC-ceE-EEeeccc
Confidence            4455555555443332222111  0001100000     0000012345555554  55555665444 110 0000000


Q ss_pred             -----------CCCceEEEEEcCCCEEEEEECC--------CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCC-cEE
Q psy14258        355 -----------LKRPSVIDYHEKEEYIYYAELT--------SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN-NLY  414 (440)
Q Consensus       355 -----------~~~p~~l~~d~~~~~vy~~d~~--------~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~-~lY  414 (440)
                                 -..+..+++.+.++.+|++...        ...|+.++.....+..-+..+ ..|.+|++.+.++ .||
T Consensus       252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly  330 (368)
T d1mdah_         252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNY  330 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEE
T ss_pred             ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEE
Confidence                       0123468899999999998532        245777777654322222222 4688999998887 489


Q ss_pred             EEeCCCCeEEEEEeCCCeeeEE
Q psy14258        415 WTDAGIGTINVAKISDFSIRKV  436 (440)
Q Consensus       415 wtd~~~~~I~~~~~~g~~~~~~  436 (440)
                      .+..+.++|.+.+....+..+.
T Consensus       331 ~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         331 ANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEETTTTEEEEEESSSCEEEEE
T ss_pred             EEeCCCCeEEEEECCCCCEEEE
Confidence            9999899999999754243333

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=1.4e-05  Score=76.53  Aligned_cols=202  Identities=6%  Similarity=-0.109  Sum_probs=136.2

Q ss_pred             CeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCce
Q psy14258        184 GYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNL  263 (440)
Q Consensus       184 g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p  263 (440)
                      ..++.+....  ++|...+++.......+... ..|.++++.+.+++||.+.. .+.+...+++......+.+-.....|
T Consensus        32 ~~~~v~~~d~--g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          32 NLFSVTLRDA--GQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             GEEEEEETTT--TEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             cEEEEEEcCC--CEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecCCCC
Confidence            3456777665  68988888766555445443 46999999999999999864 57899999865444333321113567


Q ss_pred             eeeeEe------cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEE
Q psy14258        264 YDITVF------ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGL  337 (440)
Q Consensus       264 ~gl~~~------~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i  337 (440)
                      .++++.      +.+||.+....+.|...+..+++...++...                                     
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~-------------------------------------  150 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR-------------------------------------  150 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC-------------------------------------
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC-------------------------------------
Confidence            777653      4588998887888877776655443322110                                     


Q ss_pred             EcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC-eEE-EEECCCCCeeeEEEecCCCcEEE
Q psy14258        338 TFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG-KEV-VIDTGIYNVEGMAVDWMANNLYW  415 (440)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~-~~~-~~~~~~~~~~glAvD~~~~~lYw  415 (440)
                         +. ...  ...+..-..+.++.+.+.+..+||+....+.|..++..... .++ -+..+ ..|.++++++.++.+|.
T Consensus       151 ---~~-~~~--~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~v  223 (432)
T d1qksa2         151 ---GM-TYD--EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFIT  223 (432)
T ss_dssp             ---EE-CTT--TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEE
T ss_pred             ---Cc-ccc--ceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEE
Confidence               00 000  00111123466788888899999999889999999876433 222 22333 57999999999999999


Q ss_pred             EeCCCCeEEEEEeCCCee
Q psy14258        416 TDAGIGTINVAKISDFSI  433 (440)
Q Consensus       416 td~~~~~I~~~~~~g~~~  433 (440)
                      +....+.|.+.+.+....
T Consensus       224 a~~~~~~v~v~d~~~~~~  241 (432)
T d1qksa2         224 AANARNKLVVIDTKEGKL  241 (432)
T ss_dssp             EEGGGTEEEEEETTTTEE
T ss_pred             eccccceEEEeecccceE
Confidence            999999999999987443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.46  E-value=1.9e-05  Score=71.34  Aligned_cols=233  Identities=8%  Similarity=-0.014  Sum_probs=124.8

Q ss_pred             ccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCC-----CCCceEEEEcCCCCeEEEEEcCCC--------
Q psy14258        133 LLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLN-----LSKPRGIALDPTSGYMFFTKWGAT--------  194 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~-----~~~P~~iavd~~~g~lywtd~~~~--------  194 (440)
                      ...|.+ |+.+.++.||++    +.|.+.++.......-+...     ...|.++++.|...++|++.....        
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence            456889 999999989988    67999998764433222211     246889999998889999864311        


Q ss_pred             -CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEecCC----ccCceeeeeE
Q psy14258        195 -RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGF----PVQNLYDITV  268 (440)
Q Consensus       195 -~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~----~~~~p~gl~~  268 (440)
                       ...+...+.........+. ....|.++++++.+.++|.++.   .+..++...... ..+..+.    ....|.+..+
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR---DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS---SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             cccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC---CcceeeeecCcEEEEeecCCccccceecCCccee
Confidence             1345555554333222222 2356899999999999998753   344455433222 2221111    0111222221


Q ss_pred             e----cCEE----EEEe-cC---------CCeEEEEeccCCCceEE-EecCC-CCeEEEEeccCCCCCCCCCc-eeEEee
Q psy14258        269 F----ENNL----FVTS-WR---------NQSIIRVNKFNSDDYET-IANFS-RPFAIHIYHRQKQPDALKPS-TFLLYA  327 (440)
Q Consensus       269 ~----~~~l----y~td-~~---------~~~i~~~~~~~g~~~~~-~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~~~  327 (440)
                      .    ....    +... +.         ...+...+..+++.... ..... .+..+.+.          ++ .+++.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  258 (337)
T d1pbyb_         189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN----------PAKTRAFGA  258 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC----------TTSSEEEEE
T ss_pred             eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec----------ccceEEEEc
Confidence            1    0000    0110 00         01222233222222111 11111 11111111          23 344443


Q ss_pred             cCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        328 KGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       328 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                       .  +.|..+++...    .....+..-..|.+++|.+++++||++. ..++|...+...
T Consensus       259 -~--~~i~v~d~~~~----~~~~~~~~~~~~~~~~~s~dG~~l~v~~-~~~~i~v~D~~t  310 (337)
T d1pbyb_         259 -Y--NVLESFDLEKN----ASIKRVPLPHSYYSVNVSTDGSTVWLGG-ALGDLAAYDAET  310 (337)
T ss_dssp             -E--SEEEEEETTTT----EEEEEEECSSCCCEEEECTTSCEEEEES-BSSEEEEEETTT
T ss_pred             -c--ccEEEEECCCC----cEEEEEcCCCCEEEEEECCCCCEEEEEe-CCCcEEEEECCC
Confidence             3  57888887655    3333333345788999999999999885 567899888874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.39  E-value=9.8e-05  Score=67.32  Aligned_cols=280  Identities=8%  Similarity=-0.045  Sum_probs=145.7

Q ss_pred             eeecCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-------CCcEEEEeCC
Q psy14258        140 FPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-------RPMLERSLLD  204 (440)
Q Consensus       140 vD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-------~~~I~r~~~d  204 (440)
                      .-+.++.+|++        ..|.+.+.+.......+..+  ...++++.|...+||+++....       ...|...++.
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~   86 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV   86 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence            34567778886        46888888765433222222  3337999998888999864210       1357777776


Q ss_pred             CCCceeEEec-------CccCceEEEEeCCCCEEEEEeCCCC-cEEEEEccCCC-cEEEecCC-cc----CceeeeeEec
Q psy14258        205 GTERFPMVTH-------KIVYPYGVTVDFPTKHVYWVDTYLD-FIDRINYDGTD-RKTIRKGF-PV----QNLYDITVFE  270 (440)
Q Consensus       205 G~~~~~l~~~-------~~~~P~gl~vD~~~~~ly~~d~~~~-~i~~~~~dG~~-~~~i~~~~-~~----~~p~gl~~~~  270 (440)
                      .......+..       ....|.++++.+.++++|+++.... .+...+..... ...+.... ..    ..+..+++..
T Consensus        87 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (355)
T d2bbkh_          87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR  166 (355)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred             CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC
Confidence            5433322221       1346889999999999999986554 34444443322 22222110 00    0111233322


Q ss_pred             --CEEEEEecCCCeEEEEeccCCCceEEEecCCCCe-EEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCC--
Q psy14258        271 --NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF-AIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTT--  345 (440)
Q Consensus       271 --~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~-~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~--  345 (440)
                        ..+++.....+.+...+........     ..+. ......        .+...++.+..  +.++.++++.....  
T Consensus       167 dg~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------~~~~~~~~~~~--~~~~v~~~~~~~~~~~  231 (355)
T d2bbkh_         167 DGSLAKVAFGTEGTPEITHTEVFHPED-----EFLINHPAYSQ--------KAGRLVWPTYT--GKIHQIDLSSGDAKFL  231 (355)
T ss_dssp             TSCEEEEECCSSSCCEEEECCCCSCTT-----SCBCSCCEEET--------TTTEEEEEBTT--SEEEEEECTTSSCEEC
T ss_pred             CCCEEEEEecCCCeEEEEeccccccee-----cceeeeccccC--------CCCeEEEecCC--CeEEEEecCCCcEEEE
Confidence              2555554444443333322111000     0000 001110        11123333333  67777776654110  


Q ss_pred             --ce----eeeeec-CCCCceEEEEEcCCCEEEEEECC---------CCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258        346 --EQ----AIMPIT-DLKRPSVIDYHEKEEYIYYAELT---------SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM  409 (440)
Q Consensus       346 --~~----~~~~~~-~~~~p~~l~~d~~~~~vy~~d~~---------~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~  409 (440)
                        .+    ...... .-..+..+++.+.+..+|++...         .+.|...++.......-+..+ ..|.+||+.+.
T Consensus       232 ~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spD  310 (355)
T d2bbkh_         232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQD  310 (355)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCS
T ss_pred             eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCC
Confidence              00    000000 00123468999999999998532         246888887754332222222 46899999988


Q ss_pred             CCc-EEEEeCCCCeEEEEEeCCCeeeEEe
Q psy14258        410 ANN-LYWTDAGIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       410 ~~~-lYwtd~~~~~I~~~~~~g~~~~~~l  437 (440)
                      ++. ||.+....+.|.+.++...+..+.|
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence            874 6778888899999998442444443

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2e-08  Score=60.55  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=30.1

Q ss_pred             ecccCCCCCCCCCCcccCCCceEEc-cCCeeee
Q psy14258         13 DADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        13 d~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      |+|||+.++.|+|.|.|++|+|+|. ++||.|.
T Consensus         1 DidEC~~~~~C~~~C~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3           1 DIDECENGGFCSGVCHNLPGTFECICGPDSALA   33 (40)
T ss_dssp             ECCHHHHCSSCSSEEEECSSSEEEEECSSSSCE
T ss_pred             CccccCCCcCccCEeeCCCCCeEeECCCCCeeC
Confidence            7899998899999999999999999 9999985

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9.7e-08  Score=58.49  Aligned_cols=32  Identities=34%  Similarity=0.699  Sum_probs=29.8

Q ss_pred             cccCCCCCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         14 ADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        14 ~~~C~~~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +|||+.++.|+|.|.|++|+|.|. ++||.|.+
T Consensus         1 idEC~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~   33 (41)
T d1i0ua2           1 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP   33 (41)
T ss_dssp             CCTTTTTTSCSSCEECSSSCCEECCCTTEEECT
T ss_pred             CccCCCCCCCCCEeECCCCCEEeECCCCCeECC
Confidence            589998899999999999999999 99999865

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.4e-07  Score=58.40  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             ceeecccCCCC-CCCCCCcccCCCceEEc-cCCeeee
Q psy14258         10 QCVDADECLID-GSCDQTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        10 ~C~d~~~C~~~-~~Cs~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      +|.|+|||..+ ..|.+.|.|++|+|.|. ++||.+.
T Consensus         1 sCvDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~   37 (43)
T d1emoa1           1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA   37 (43)
T ss_dssp             CCCCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEES
T ss_pred             CCcceeccCCcCCCCCCEeECCCCCeEeECCCCcccC
Confidence            69999999854 56777999999999999 9999874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.30  E-value=6.1e-05  Score=68.80  Aligned_cols=258  Identities=7%  Similarity=-0.084  Sum_probs=127.2

Q ss_pred             ccce-eeeecCCcEEEe-------------ceEEEEecCCceEEEEEc-C------CCCCceEEEEcCCCCeEEEEEcCC
Q psy14258        135 DGTE-RFPMVTHKIVYP-------------EAIYFCTHYMEHCMIAID-L------NLSKPRGIALDPTSGYMFFTKWGA  193 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~-------------~~I~~~~~dg~~~~~~~~-~------~~~~P~~iavd~~~g~lywtd~~~  193 (440)
                      ...+ |+.+.++.||++             +.|.+.++........+. .      ....|.++++.|..+++|+++...
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence            3448 999999999987             357788877544332222 1      135689999999989999988765


Q ss_pred             CCCcEEEEeCCCCCceeEEec-------CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc--EEEec-CCccCce
Q psy14258        194 TRPMLERSLLDGTERFPMVTH-------KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR--KTIRK-GFPVQNL  263 (440)
Q Consensus       194 ~~~~I~r~~~dG~~~~~l~~~-------~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~--~~i~~-~~~~~~p  263 (440)
                      . ..+...+.........+..       ....+..+++...+..+++.....+.+...+......  ..... ......+
T Consensus       128 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (355)
T d2bbkh_         128 A-PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  206 (355)
T ss_dssp             S-CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             C-ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence            4 4555555543322222221       1123445677777777887776666555554322110  00000 0000011


Q ss_pred             eeeeE--ecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCe---EEEEeccCCCCCCCCCc-eeEEeec---------
Q psy14258        264 YDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF---AIHIYHRQKQPDALKPS-TFLLYAK---------  328 (440)
Q Consensus       264 ~gl~~--~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~---~~~v~~~~~qp~~~~~~-~~l~~~~---------  328 (440)
                      ..+..  .++.+|..+...+.+..++..++...........|.   .+.+.          ++ ..++++.         
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----------~d~~~~~~~~~~~~~~~~~  276 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH----------RALDRIYLLVDQRDEWRHK  276 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE----------TTTTEEEEEEEECCTTCTT
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEe----------CCCCeEEEEeccCCceeec
Confidence            11111  122444444443333333322221111000000011   11111          11 2233221         


Q ss_pred             CCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCE-EEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEe
Q psy14258        329 GKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEY-IYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVD  407 (440)
Q Consensus       329 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~-vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD  407 (440)
                      .....|..+++...    .....+..-..|.++++.++++. +|++....++|+..+........-+...-..|+-+++.
T Consensus       277 ~~~~~v~v~d~~t~----~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~  352 (355)
T d2bbkh_         277 TASRFVVVLDAKTG----ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA  352 (355)
T ss_dssp             SCEEEEEEEETTTC----CEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred             CCCCeEEEEeCCCC----cEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeC
Confidence            11245666666544    11111121235789999998774 67777778999999986433222222112557777654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.26  E-value=0.00015  Score=66.73  Aligned_cols=218  Identities=10%  Similarity=0.056  Sum_probs=129.2

Q ss_pred             eeeEEEecCCCcee---eeeec-----ccceEEEEEeeecc-c--EEEEEEc--CCCCceeEEeCCCCCcceeecccccc
Q psy14258         60 ECFGPMDIEEWDEG---LSFLT-----FAQEAIYFCTHYME-H--CMIAIDL--NLSKPRGIALDPTSGYMFFTKWGATR  126 (440)
Q Consensus        60 ~~I~~~~l~~~~~~---~~~~~-----~~~~~~~i~~d~~~-~--~ly~~d~--~~~~I~~~~~~~~~~~~~~~~~~~~~  126 (440)
                      ++|..++++.....   +.+..     ..-.|.||++.... +  +||..+-  ...+|....++....+-....     
T Consensus        68 G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~-----  142 (340)
T d1v04a_          68 GKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK-----  142 (340)
T ss_dssp             CEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE-----
T ss_pred             CeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEe-----
Confidence            56888888755443   22211     01138999974432 2  5777764  334454444432221111100     


Q ss_pred             ceeeccccccce-eeeecCCcEEEe-------------------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeE
Q psy14258        127 PMLERSLLDGTE-RFPMVTHKIVYP-------------------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYM  186 (440)
Q Consensus       127 v~~~~~~~~p~~-avD~~~~~lY~~-------------------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~l  186 (440)
                      .+-...+..|.+ ++...+ .+|+|                   ....++..+++..+++. .++..|.||+++|...+|
T Consensus       143 ~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~l  220 (340)
T d1v04a_         143 TIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYV  220 (340)
T ss_dssp             EECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEE
T ss_pred             ecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEE
Confidence            112245677999 777655 48988                   23455666777776655 478899999999988899


Q ss_pred             EEEEcCCCCCcEEEEeCCCCCceeEEe--cCccCceEEEEeCCCCEEEEEeCCC--------------CcEEEEE-ccC-
Q psy14258        187 FFTKWGATRPMLERSLLDGTERFPMVT--HKIVYPYGVTVDFPTKHVYWVDTYL--------------DFIDRIN-YDG-  248 (440)
Q Consensus       187 ywtd~~~~~~~I~r~~~dG~~~~~l~~--~~~~~P~gl~vD~~~~~ly~~d~~~--------------~~i~~~~-~dG-  248 (440)
                      |+++...  .+|.+..+++....+...  .-...|-.|.+|..++.++.+-.-.              ..+.++. .++ 
T Consensus       221 yVa~t~~--~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~  298 (340)
T d1v04a_         221 YIAELLA--HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSE  298 (340)
T ss_dssp             EEEEGGG--TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSS
T ss_pred             EEEeCCC--CeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCC
Confidence            9999887  599999998765433322  1234689999997788887764211              1244443 222 


Q ss_pred             -CCcEEEec--CCccCceeeeeEecCEEEEEecCCCeEEEEe
Q psy14258        249 -TDRKTIRK--GFPVQNLYDITVFENNLFVTSWRNQSIIRVN  287 (440)
Q Consensus       249 -~~~~~i~~--~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~  287 (440)
                       .....+..  +..+........++++||+.......+ .|+
T Consensus       299 ~~~v~~~~~~~G~~~~~~T~a~~~~g~L~iGs~~~~~l-~C~  339 (340)
T d1v04a_         299 EPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKAL-YCD  339 (340)
T ss_dssp             SCEEEEEEEECSSSSCSEEEEEEETTEEEEEESSSCEE-EEE
T ss_pred             CCeEEEEEeCCCcEeeceEEEEEECCEEEEEeeeCCce-Eec
Confidence             23333333  333444455556788999987665544 344

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.24  E-value=0.0014  Score=62.11  Aligned_cols=214  Identities=7%  Similarity=-0.100  Sum_probs=122.4

Q ss_pred             ccce-eeeecCCcEE-Ee----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        135 DGTE-RFPMVTHKIV-YP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       135 ~p~~-avD~~~~~lY-~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      .|.. ..+....+|+ ++    ++|.+.+++...+...+..+ ..|.++++.|...+||.+...   +.|...+++....
T Consensus        20 ~~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~d---g~v~~~d~~t~~~   95 (432)
T d1qksa2          20 RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRD---GKVNMIDLWMKEP   95 (432)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETT---SEEEEEETTSSSC
T ss_pred             CCCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCC---CCEEEEEeeCCCc
Confidence            3444 4444445564 66    79999999977665555544 579999999987888888754   5899999875444


Q ss_pred             eeEEec-CccCceEEEEeC----CCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEecCCC
Q psy14258        209 FPMVTH-KIVYPYGVTVDF----PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQ  281 (440)
Q Consensus       209 ~~l~~~-~~~~P~gl~vD~----~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~~~  281 (440)
                      ..+..- ....|.++++.+    .+++||.+....+.|...+............. ...+..+++  .++..++..... 
T Consensus        96 ~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~s~d-  173 (432)
T d1qksa2          96 TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR-GMTYDEQEYHPEPRVAAILASHY-  173 (432)
T ss_dssp             CEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC-EECTTTCCEESCCCEEEEEECSS-
T ss_pred             eEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC-CccccceeccCCCceeEEEECCC-
Confidence            333221 234678887754    56789999888888988887655544333210 000010111  011111110000 


Q ss_pred             eEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEE
Q psy14258        282 SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVI  361 (440)
Q Consensus       282 ~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l  361 (440)
                                                             ...++++....+.|..++.... . ......+..-..|.++
T Consensus       174 ---------------------------------------g~~~~vs~~~~~~i~~~d~~~~-~-~~~~~~i~~g~~~~~~  212 (432)
T d1qksa2         174 ---------------------------------------RPEFIVNVKETGKILLVDYTDL-N-NLKTTEISAERFLHDG  212 (432)
T ss_dssp             ---------------------------------------SSEEEEEETTTTEEEEEETTCS-S-EEEEEEEECCSSEEEE
T ss_pred             ---------------------------------------CCEEEEEEccCCeEEEEEccCC-C-cceEEEEcccCccccc
Confidence                                                   1222333222244444433221 0 0011122223457888


Q ss_pred             EEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE
Q psy14258        362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID  395 (440)
Q Consensus       362 ~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~  395 (440)
                      ++++.+.++|++....+.|...+.+.........
T Consensus       213 ~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             eECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            8999888899988888888888887654444444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.22  E-value=9.7e-05  Score=66.69  Aligned_cols=292  Identities=6%  Similarity=-0.105  Sum_probs=141.3

Q ss_pred             eeEEEEee-cccceeeeEEEecCCCcee--eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccc
Q psy14258         47 KTHLYETI-EAFWEECFGPMDIEEWDEG--LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG  123 (440)
Q Consensus        47 ~~ll~s~~-~~~~~~~I~~~~l~~~~~~--~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~  123 (440)
                      .+|++++. +.     |..+++......  +.++... .|.++++++.++++|++....+.|...++.............
T Consensus         9 ~~l~~~~~~~~-----v~v~D~~t~~~~~t~~~~~~~-~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_           9 EYMIVTNYPNN-----LHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             EEEEEEETTTE-----EEEEETTTTEEEEEEECSSCC-SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             cEEEEEcCCCE-----EEEEECCCCCEEEEEEcCCCC-CcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence            34554443 35     999999866654  3343222 288999999999999999988888887765332211000000


Q ss_pred             cccceeeccccccce-eeeecCCcEEEe---------------ceEEEEecCC-ceEEEEEcCCCCCceEEEEcCCCCeE
Q psy14258        124 ATRPMLERSLLDGTE-RFPMVTHKIVYP---------------EAIYFCTHYM-EHCMIAIDLNLSKPRGIALDPTSGYM  186 (440)
Q Consensus       124 ~~~v~~~~~~~~p~~-avD~~~~~lY~~---------------~~I~~~~~dg-~~~~~~~~~~~~~P~~iavd~~~g~l  186 (440)
                      .    .......|.+ ++.+.++.+|++               ..+.+.+... .....+..........+...+..+++
T Consensus        83 ~----~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          83 V----PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             S----TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             c----ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            0    0122346889 999999999988               1122222221 11100000000111122333445667


Q ss_pred             EEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeee
Q psy14258        187 FFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDI  266 (440)
Q Consensus       187 ywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl  266 (440)
                      |.++     ..+...+.........+. ...+|.++.+.+.+..+|.+....+.+..........           +...
T Consensus       159 ~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~  221 (346)
T d1jmxb_         159 YVAG-----PDIYKMDVKTGKYTVALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK-----------DDKQ  221 (346)
T ss_dssp             EEES-----SSEEEECTTTCCEEEEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----------------
T ss_pred             EEeC-----CcceEEEccCCCEEEEEe-cCCCccceEEeccccEEEEEecCCCceEeeeeeeeec-----------cCce
Confidence            7654     234444443221111111 1234555566656666666655555444433221100           0000


Q ss_pred             eEecCEEEEEecCCCeEEEEeccCCCceEE-EecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC
Q psy14258        267 TVFENNLFVTSWRNQSIIRVNKFNSDDYET-IANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT  344 (440)
Q Consensus       267 ~~~~~~ly~td~~~~~i~~~~~~~g~~~~~-~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~  344 (440)
                            .+.+......+..++..++..... ..... ....+....         .+.++.+...  +.|..+++...  
T Consensus       222 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~v~v~d~~~~--  282 (346)
T d1jmxb_         222 ------DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP---------KDPNQIYGVL--NRLAKYDLKQR--  282 (346)
T ss_dssp             --------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS---------SCTTEEEEEE--SEEEEEETTTT--
T ss_pred             ------eEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeC---------CCCEEEEecC--CeEEEEECCCC--
Confidence                  000000112233333333322221 11111 122222221         1233444433  56777776544  


Q ss_pred             CceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258        345 TEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG  387 (440)
Q Consensus       345 ~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g  387 (440)
                        .....+..-..|.+++|.+++.+||++. ..+.|...++..
T Consensus       283 --~~~~~~~~~~~~~~va~s~DG~~l~v~~-~d~~v~v~D~~t  322 (346)
T d1jmxb_         283 --KLIKAANLDHTYYCVAFDKKGDKLYLGG-TFNDLAVFNPDT  322 (346)
T ss_dssp             --EEEEEEECSSCCCEEEECSSSSCEEEES-BSSEEEEEETTT
T ss_pred             --cEEEEEcCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECcc
Confidence              2222233334688999999999999986 468899988874

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.11  E-value=1.4e-05  Score=75.95  Aligned_cols=238  Identities=13%  Similarity=0.052  Sum_probs=140.9

Q ss_pred             CCCCceEEEEc--CCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-ccCceEEEEeCCCCEEEEEeCCCCcEE----
Q psy14258        170 NLSKPRGIALD--PTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-IVYPYGVTVDFPTKHVYWVDTYLDFID----  242 (440)
Q Consensus       170 ~~~~P~~iavd--~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-~~~P~gl~vD~~~~~ly~~d~~~~~i~----  242 (440)
                      ...+|..-..+  |..++||.+|...  .+|.+.+++--....++..+ ...|.|+++.+.++++|++......+.    
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~--~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKAN--TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTT--TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCC--CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            44566655543  4457899999887  59999999865555555433 567999999988999999876554432    


Q ss_pred             --------------EEEccCCCc-EEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeE
Q psy14258        243 --------------RINYDGTDR-KTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFA  305 (440)
Q Consensus       243 --------------~~~~dG~~~-~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~  305 (440)
                                    .++...... ..+..+   ..|.++++.  +.++|++...++.+..++..+.+....+.....|..
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~---~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVD---GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecC---CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence                          233222221 111112   356666664  559999988776665555544444433322222333


Q ss_pred             EEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        306 IHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       306 ~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                      +.+..         ...|+.+...  + +..+.....   ......++.-..|.|++++|+++++|++...+++|..+++
T Consensus       223 ~~~~~---------dGk~~~v~~~--~-v~vvd~~~~---~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         223 AAAVK---------AGNFKTIGDS--K-VPVVDGRGE---SEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             HHHHH---------TTCCBCCTTC--C-CCEEECSSS---CSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             EEEec---------CCCEEEeCCC--C-cEEEEcccC---CceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence            32221         1133333322  2 222221111   1233334444679999999999999999999999999996


Q ss_pred             CC-------C--CeE-EEEECCC-CCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        386 FG-------R--GKE-VVIDTGI-YNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       386 ~g-------~--~~~-~~~~~~~-~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      .-       .  .+. +..+.++ -.|-.-++|. .++.|-+-.....|..-++
T Consensus       288 ~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         288 DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             GGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEH
T ss_pred             ehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEecc
Confidence            42       1  112 2222211 2477779996 4689988776677766665

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.09  E-value=5.1e-06  Score=79.07  Aligned_cols=195  Identities=11%  Similarity=-0.044  Sum_probs=110.1

Q ss_pred             CceEEEE--eCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEE--------
Q psy14258        218 YPYGVTV--DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIR--------  285 (440)
Q Consensus       218 ~P~gl~v--D~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~--------  285 (440)
                      +|.....  .+.+++||++|...++|.+++++-.....+..-.....|.|+++.  +..+|++......+-.        
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            4544333  245889999999999999999986655544442125689999986  5588988765554422        


Q ss_pred             ----------EeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecC
Q psy14258        286 ----------VNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD  354 (440)
Q Consensus       286 ----------~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~  354 (440)
                                ++..+.+....+.-...|.++.+.          |+ .+++++..+...+..+..... ...+ .+.+. 
T Consensus       151 ~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~s----------pdGk~a~vt~~nse~~~~id~~t~-~~~d-~i~v~-  217 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDAD----------YTGKYATSTCYNSERAVDLAGTMR-NDRD-WVVVF-  217 (441)
T ss_dssp             GGGEEEEEEEEETTTCSEEEEEEESSCCCCEEEC----------SSSSEEEEEESCTTCCSSHHHHTC-SSBC-EEEEE-
T ss_pred             cccccceEEeecCccceeeEEEecCCCccceEEC----------CCCCEEEEEecCCCceEEEeccCc-ceEE-EEEeC-
Confidence                      222222211111111123333222          23 567766554333322221111 0011 11221 


Q ss_pred             CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        355 LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       355 ~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                       ..|.++++-+.++++++.+  .+.+.............+..+ ..|.|+++++.++.||.+....++|.++++.
T Consensus       218 -n~p~~~~~~~dGk~~~v~~--~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         218 -NVERIAAAVKAGNFKTIGD--SKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             -EHHHHHHHHHTTCCBCCTT--CCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             -CccceEEEecCCCEEEeCC--CCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence             2456666667777666532  222222222333333334433 6799999999999999999999999999964

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.09  E-value=5.7e-05  Score=70.03  Aligned_cols=250  Identities=7%  Similarity=-0.015  Sum_probs=126.8

Q ss_pred             ce-eeeecCCcEEEe-------------ceEEEEecCCceEEEEEc-------CCCCCceEEEEcCCCCeEEEEEcCCCC
Q psy14258        137 TE-RFPMVTHKIVYP-------------EAIYFCTHYMEHCMIAID-------LNLSKPRGIALDPTSGYMFFTKWGATR  195 (440)
Q Consensus       137 ~~-avD~~~~~lY~~-------------~~I~~~~~dg~~~~~~~~-------~~~~~P~~iavd~~~g~lywtd~~~~~  195 (440)
                      .+ ++.+.++.||++             +.|.+.+.........+.       .....|.++++.|...+||+++...  
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~--  145 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS--  145 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS--
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC--
Confidence            37 888888889986             348888887655433222       1235688999999888999998765  


Q ss_pred             CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEecCC----ccCceeeeeEe-
Q psy14258        196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGF----PVQNLYDITVF-  269 (440)
Q Consensus       196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~----~~~~p~gl~~~-  269 (440)
                      +.|...++........+...    ....+-+...+.+.+....+++..+.++.... .......    ....+...... 
T Consensus       146 ~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         146 SAAAGLSVPGASDDQLTKSA----SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             SCEEEEEETTTEEEEEEECS----SCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred             CeEEEEECCCCcEeEEeecc----CcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc
Confidence            48888887665433333221    11111112334444444455555555432221 1111100    01122222222 


Q ss_pred             --------cCEEEEEecCCCeEEEEeccCCCceEEEecC---CCCeEEEEeccCCCCCCCCCceeEEeecC--------C
Q psy14258        270 --------ENNLFVTSWRNQSIIRVNKFNSDDYETIANF---SRPFAIHIYHRQKQPDALKPSTFLLYAKG--------K  330 (440)
Q Consensus       270 --------~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~---~~p~~~~v~~~~~qp~~~~~~~~l~~~~~--------~  330 (440)
                              ++.+|..++..+.+...+...+.........   ..+..+.+.         .....+|++..        .
T Consensus       222 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~---------~~~~~~~v~~~~~~~~~~~~  292 (368)
T d1mdah_         222 PGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL---------KNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             TTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE---------TTTTEEEEEEEECSSCTTSC
T ss_pred             CcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc---------CCCCEEEEEecCCCceeecC
Confidence                    2244444444444443333222111100000   001111111         01233444321        1


Q ss_pred             ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCC-EEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEE
Q psy14258        331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE-YIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAV  406 (440)
Q Consensus       331 ~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~-~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAv  406 (440)
                      ...|..++....    .....+..-..|.++++.++++ .+|.+....++|+..+........-+..+ ..|++|+|
T Consensus       293 ~~~v~v~D~~t~----~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g-~~P~~l~~  364 (368)
T d1mdah_         293 AENTSSVTASVG----QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSV  364 (368)
T ss_dssp             EEEEEEEESSSC----CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEEC
T ss_pred             CceEEEEECCCC----cEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC-CCCCEEEE
Confidence            235666776544    1111222223577899999876 58999988999999998653322222323 46999997

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6.6e-07  Score=54.14  Aligned_cols=31  Identities=29%  Similarity=0.853  Sum_probs=27.9

Q ss_pred             cccCCC-CCCCCCCcccCCCceEEc-cCCeeee
Q psy14258         14 ADECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        14 ~~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~   44 (440)
                      .|||.. ++.|+|+|.|++++|+|. ++||.|.
T Consensus         2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~   34 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV   34 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE
T ss_pred             cccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC
Confidence            588974 789999999999999999 9999885

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.8e-06  Score=52.69  Aligned_cols=31  Identities=23%  Similarity=0.459  Sum_probs=27.6

Q ss_pred             ccCCC--CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         15 DECLI--DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        15 ~~C~~--~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      |||..  .+.|+|.|.|++|+|+|. +.||.|.+
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~   34 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHD   34 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECT
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECC
Confidence            68873  479999999999999999 99999865

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.0071  Score=54.30  Aligned_cols=273  Identities=6%  Similarity=-0.056  Sum_probs=146.8

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|++.++.|+-..  .+.|+..++........     .........-..... ++.+.++.|+.+   +.|.+.+
T Consensus        53 ~V~~v~fs~~g~~latg~--dg~V~iWd~~~~~~~~~-----~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSP-----VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSC-----SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEE--CCEEEEEEccCCcccce-----eEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            388999999877766443  45666555543221110     000001111223455 666666655544   6788888


Q ss_pred             cCCceEEEE--EcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEe
Q psy14258        158 HYMEHCMIA--IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       158 ~dg~~~~~~--~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d  235 (440)
                      +.....+..  +.........+++.|....++.+...   ..|...++..................+++.+.+..++.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~  202 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD---GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence            876443322  22334556788899865555544433   5788888875544333333334567888887777777765


Q ss_pred             CCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCC
Q psy14258        236 TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQK  313 (440)
Q Consensus       236 ~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~  313 (440)
                       ..+.+...++...........  ...+..+++..+  .++.. ..++.|...+..+++.............+.+.    
T Consensus       203 -~d~~v~i~d~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s----  274 (337)
T d1gxra_         203 -LDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPDKYQLHLHESCVLSLKFA----  274 (337)
T ss_dssp             -TTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSCEEEECCCSSCEEEEEEC----
T ss_pred             -ccccccccccccceeeccccc--ccceEEEEEccccccccee-ccccccccccccccccccccccccccceEEEC----
Confidence             456777777654332222221  234567776533  44443 34667776676555433322222233444432    


Q ss_pred             CCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEE
Q psy14258        314 QPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERR  383 (440)
Q Consensus       314 qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~  383 (440)
                            |++-++++-+..+.|+..+....    ........-.....++|.+.+++|..+ ...++|+.-
T Consensus       275 ------~~g~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~~~~v~~~~~s~d~~~l~t~-s~D~~I~vW  333 (337)
T d1gxra_         275 ------YCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYIVTG-SGDKKATVY  333 (337)
T ss_dssp             ------TTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSCEEEEEECTTSCEEEEE-ETTSCEEEE
T ss_pred             ------CCCCEEEEEeCCCeEEEEECCCC----CEEEEccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEE
Confidence                  33334444344477887776544    222233334466789999877766443 355666543

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.8e-06  Score=56.16  Aligned_cols=34  Identities=32%  Similarity=0.618  Sum_probs=28.6

Q ss_pred             eecccCCCC---------CCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         12 VDADECLID---------GSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~~~---------~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      .|+|||...         ..|+|.|.|++|+|+|. ++||.|..
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~   45 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECT
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECC
Confidence            588999842         35789999999999999 99999864

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.1e-06  Score=53.55  Aligned_cols=32  Identities=25%  Similarity=0.654  Sum_probs=27.6

Q ss_pred             cccCCCCC----CCCCCcccCCCceEEc-cCCeeeec
Q psy14258         14 ADECLIDG----SCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        14 ~~~C~~~~----~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      ||||+...    .|+|.|.|++|+|+|. +.||.|..
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~   37 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHR   37 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECT
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECC
Confidence            58998532    6999999999999999 99999864

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.8e-06  Score=53.41  Aligned_cols=34  Identities=29%  Similarity=0.477  Sum_probs=29.1

Q ss_pred             eecccCCC-CCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         12 VDADECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~~-~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      .|+|||+. +..|.+.|.|++|+|.|. ++||.+.+
T Consensus         1 TDidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~   36 (43)
T d1uzka1           1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP   36 (43)
T ss_dssp             CCCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECT
T ss_pred             CCccccCCCCcCcCCEeECCCCCEEEecCCCCEECC
Confidence            48999985 456778999999999999 99999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=0.0034  Score=56.40  Aligned_cols=170  Identities=8%  Similarity=-0.072  Sum_probs=110.6

Q ss_pred             eeEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCC-CceeEEeCCCCCcceeeccccc
Q psy14258         47 KTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLS-KPRGIALDPTSGYMFFTKWGAT  125 (440)
Q Consensus        47 ~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~-~I~~~~~~~~~~~~~~~~~~~~  125 (440)
                      ..+.++.+.+     |+..++++.... .+.. ...+.+++|.+.++.|+++....+ .|+..++.+.....        
T Consensus        16 ~~~a~~~~g~-----v~v~d~~~~~~~-~~~~-~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~--------   80 (360)
T d1k32a3          16 DLIAFVSRGQ-----AFIQDVSGTYVL-KVPE-PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK--------   80 (360)
T ss_dssp             GCEEEEETTE-----EEEECTTSSBEE-ECSC-CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE--------
T ss_pred             CEEEEEECCe-----EEEEECCCCcEE-EccC-CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE--------
Confidence            3455666677     888888766554 2222 223999999999989888765543 45555554433221        


Q ss_pred             cceeeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-------
Q psy14258        126 RPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-------  194 (440)
Q Consensus       126 ~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-------  194 (440)
                         +......+.. ++.+.++.|..+   ..+...++++.....+..........+++.|...+|.++.....       
T Consensus        81 ---~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  157 (360)
T d1k32a3          81 ---FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV  157 (360)
T ss_dssp             ---CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred             ---eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecc
Confidence               2234455667 888888877766   67888999888777666656667889999997777877753221       


Q ss_pred             CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEe
Q psy14258        195 RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVD  235 (440)
Q Consensus       195 ~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d  235 (440)
                      ...+...++.+.....+. .......++++.+.+.+|++..
T Consensus       158 ~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         158 MQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEE
T ss_pred             ccceeeeccccCceeeec-ccccccccccccCCCCEEEEEe
Confidence            134566666654333222 2234456788888888888765

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.2e-06  Score=53.74  Aligned_cols=33  Identities=33%  Similarity=0.507  Sum_probs=28.9

Q ss_pred             ecccCC-CCCCCCC-CcccCCCceEEc-cCCeeeec
Q psy14258         13 DADECL-IDGSCDQ-TCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        13 d~~~C~-~~~~Cs~-~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      |+|||+ .++.|.+ .|.|++|+|+|. ++||.+.+
T Consensus         1 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~   36 (42)
T d1lmja2           1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP   36 (42)
T ss_dssp             ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCS
T ss_pred             CccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECc
Confidence            789998 4678887 899999999999 99999754

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1e-06  Score=54.39  Aligned_cols=34  Identities=32%  Similarity=0.672  Sum_probs=28.9

Q ss_pred             eecccCC-CCCCCC-CCcccCCCceEEc-cCCeeeec
Q psy14258         12 VDADECL-IDGSCD-QTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        12 ~d~~~C~-~~~~Cs-~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      +|+|||. .++.|. |.|.|++|+|+|. ++||.+..
T Consensus         1 qDinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~   37 (43)
T d1uzka2           1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE   37 (43)
T ss_dssp             EECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCT
T ss_pred             CCcccccCCCCCcCCCEEECCCCCeEeECCCCCeECc
Confidence            5899998 456775 6899999999999 99999854

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.82  E-value=0.0045  Score=55.50  Aligned_cols=138  Identities=10%  Similarity=-0.017  Sum_probs=89.6

Q ss_pred             cccce-eeeecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258        134 LDGTE-RFPMVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  207 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~  207 (440)
                      ..+.. ++.+.++.|+++     ..|.+.+.++...+.+ ......+.++++.|...+|..+...   ..+...++++..
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~~---~~~~~~~~~~~~  118 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGK  118 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCC
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe-eCCCceEEeeeecccccccceeccc---cccccccccccc
Confidence            35667 888888888877     3688888888766554 3455678999999976666666654   488999998877


Q ss_pred             ceeEEecCccCceEEEEeCCCCEEEEEeCCC---------CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEE
Q psy14258        208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYL---------DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVT  276 (440)
Q Consensus       208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~---------~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~t  276 (440)
                      ...+..........+++.+.+..|.++....         ..+...+..+.....+...  .....++++.  +..|++.
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE--NSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS--SSBEEEEEECTTSCEEEEE
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccc--ccccccccccCCCCEEEEE
Confidence            7666665555667899988888888765322         1355555555433333222  2233444444  3366655


Q ss_pred             e
Q psy14258        277 S  277 (440)
Q Consensus       277 d  277 (440)
                      .
T Consensus       197 s  197 (360)
T d1k32a3         197 S  197 (360)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=3e-06  Score=52.86  Aligned_cols=32  Identities=28%  Similarity=0.565  Sum_probs=26.3

Q ss_pred             cccCCCC----CCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         14 ADECLID----GSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        14 ~~~C~~~----~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      ||||...    ..|+|.|.|++|+|+|. ++||.|..
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~   37 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQ   37 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECT
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECC
Confidence            5889852    35999999999999999 99999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=0.013  Score=52.15  Aligned_cols=275  Identities=8%  Similarity=-0.056  Sum_probs=143.6

Q ss_pred             EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEec
Q psy14258         83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTH  158 (440)
Q Consensus        83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~  158 (440)
                      +..+++++.+++|+++..  +.|...+++......          .+...-..... ++.+.++.|..+   +.|.+-++
T Consensus        20 ~~~~a~~~~g~~l~~~~~--~~v~i~~~~~~~~~~----------~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~   87 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCNG--TSVYTVPVGSLTDTE----------IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT   87 (311)
T ss_dssp             CCCCEECTTSSEEEEEET--TEEEEEETTCSSCCE----------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred             eEEEEEcCCCCEEEEEeC--CEEEEEECCCCceeE----------EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence            677889999999888753  345544443222111          12222344555 676665544333   68888887


Q ss_pred             CCceE--EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC
Q psy14258        159 YMEHC--MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT  236 (440)
Q Consensus       159 dg~~~--~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~  236 (440)
                      .....  ...+........+|++.|...+|..+-.+.. ..+...+++-......+.........+++++.+..++++-.
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~-~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs  166 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS  166 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred             eccccccccccccccCcccccccccccccccccccccc-ccccccccccccccccccccccccccccccccceeeecccc
Confidence            76432  2333333456789999996555555543322 34566666643322222222334678888877777777655


Q ss_pred             CCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC--------CCeEEE
Q psy14258        237 YLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS--------RPFAIH  307 (440)
Q Consensus       237 ~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~--------~p~~~~  307 (440)
                      ..+.|...+...........+ .......+++..+ .++.+-...+.|...+..++.....+....        ....+.
T Consensus       167 ~d~~i~i~d~~~~~~~~~~~~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~  245 (311)
T d1nr0a1         167 DDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT  245 (311)
T ss_dssp             TTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred             ccccccccccccccccccccc-ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            667788777765444333332 1233467777644 344444446777777766655444332111        112232


Q ss_pred             EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC--CceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258        308 IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK--RPSVIDYHEKEEYIYYAELTSYVIERRKM  385 (440)
Q Consensus       308 v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~--~p~~l~~d~~~~~vy~~d~~~~~I~r~~~  385 (440)
                      +.          |++-++++-+..+.|+..++...    .....+....  ....+.+.+.++.++.+. ..+.|.-.++
T Consensus       246 ~s----------~~~~~l~tgs~Dg~v~iwd~~t~----~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s-~dG~i~~wd~  310 (311)
T d1nr0a1         246 WS----------PDGTKIASASADKTIKIWNVATL----KVEKTIPVGTRIEDQQLGIIWTKQALVSIS-ANGFINFVNP  310 (311)
T ss_dssp             EC----------TTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSGGGCEEEEEECSSCEEEEE-TTCCEEEEET
T ss_pred             cC----------CCCCEEEEEeCCCeEEEEECCCC----cEEEEEECCCCccceEEEEEecCCEEEEEE-CCCEEEEEeC
Confidence            22          23223333333467777776544    2222222111  112344555556565554 4666666554


Q ss_pred             C
Q psy14258        386 F  386 (440)
Q Consensus       386 ~  386 (440)
                      +
T Consensus       311 d  311 (311)
T d1nr0a1         311 E  311 (311)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.3e-06  Score=50.45  Aligned_cols=33  Identities=36%  Similarity=0.704  Sum_probs=28.6

Q ss_pred             eecccCCC-CCCCCC-CcccCCCceEEc-cCCeeee
Q psy14258         12 VDADECLI-DGSCDQ-TCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        12 ~d~~~C~~-~~~Cs~-~C~n~~~~~~C~-~~g~~l~   44 (440)
                      .|+|||.. +..|.+ .|.|++|+|+|. ++||.+.
T Consensus         1 TDidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEEC
T ss_pred             CcccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccC
Confidence            48999985 567877 899999999999 9999874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.72  E-value=0.014  Score=51.97  Aligned_cols=277  Identities=11%  Similarity=0.015  Sum_probs=157.6

Q ss_pred             ccce-eeeecCCcEEEe--ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce--
Q psy14258        135 DGTE-RFPMVTHKIVYP--EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF--  209 (440)
Q Consensus       135 ~p~~-avD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~--  209 (440)
                      .|.. |+++.+++|+++  +.|.+.+++......+..........+++.|. |.+..+-...  +.|...++......  
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~d--g~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVH--GNVRIWDTTQTTHILK   95 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SSEEEEEETT--SEEEEEESSSTTCCEE
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC-CCeEeccccC--ceEeeeeeeccccccc
Confidence            4666 888888888877  67888888765544444545577899999995 5544443332  57888888765432  


Q ss_pred             eEEecCccCceEEEEeCCCCEEEEEeCCC-CcEEEEEccCCCcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEEE
Q psy14258        210 PMVTHKIVYPYGVTVDFPTKHVYWVDTYL-DFIDRINYDGTDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRV  286 (440)
Q Consensus       210 ~l~~~~~~~P~gl~vD~~~~~ly~~d~~~-~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~  286 (440)
                      ..+...-.....+++.+.+..|..+-... ..+...+++-........+ .......+++..  +.++++-...+.|...
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~-h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG-QARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC-CSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             cccccccCccccccccccccccccccccccccccccccccccccccccc-cccccccccccccceeeecccccccccccc
Confidence            22222234567899987777777664433 2345555553322111121 123456777653  4567776667778777


Q ss_pred             eccCCCceEEEecCCCC-eEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec------CCCCce
Q psy14258        287 NKFNSDDYETIANFSRP-FAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT------DLKRPS  359 (440)
Q Consensus       287 ~~~~g~~~~~~~~~~~p-~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~------~~~~p~  359 (440)
                      +..+++....+..-..+ ..+...          |++.++++-+..+.|...++... ... ......      .-....
T Consensus       175 d~~~~~~~~~~~~~~~~i~~v~~~----------p~~~~l~~~~~d~~v~~~d~~~~-~~~-~~~~~~~~~~~~h~~~V~  242 (311)
T d1nr0a1         175 EGPPFKFKSTFGEHTKFVHSVRYN----------PDGSLFASTGGDGTIVLYNGVDG-TKT-GVFEDDSLKNVAHSGSVF  242 (311)
T ss_dssp             ETTTBEEEEEECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTC-CEE-EECBCTTSSSCSSSSCEE
T ss_pred             cccccccccccccccccccccccC----------ccccccccccccccccccccccc-ccc-cccccccccccccccccc
Confidence            77665544444433333 344332          23223333333467777776544 110 011111      112346


Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCC-CeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        360 VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIY-NVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       360 ~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~-~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      +++|++.++.|+.+. ..+.|+-.++........+..+-. ...-+++.|.+..|+-+. ..+.|.+.+++
T Consensus       243 ~~~~s~~~~~l~tgs-~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s-~dG~i~~wd~d  311 (311)
T d1nr0a1         243 GLTWSPDGTKIASAS-ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS-ANGFINFVNPE  311 (311)
T ss_dssp             EEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE-TTCCEEEEETT
T ss_pred             ccccCCCCCEEEEEe-CCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEE-CCCEEEEEeCC
Confidence            899999888766544 577888888764332222332222 123467778777776664 46778877764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.69  E-value=0.013  Score=50.67  Aligned_cols=109  Identities=10%  Similarity=0.036  Sum_probs=73.4

Q ss_pred             CCcEEEe--ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC---CCcEEEEeCCCCCceeEEecC---
Q psy14258        144 THKIVYP--EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT---RPMLERSLLDGTERFPMVTHK---  215 (440)
Q Consensus       144 ~~~lY~~--~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~---~~~I~r~~~dG~~~~~l~~~~---  215 (440)
                      ++.|.|+  +.|++.+++|...+.|.. ......+.+..|...+|.|+.....   ...|+..+.+|...+.|....   
T Consensus        12 G~~v~f~~~~dl~~~d~~~g~~~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~   90 (281)
T d1k32a2          12 GDRIIFVCCDDLWEHDLKSGSTRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS   90 (281)
T ss_dssp             TTEEEEEETTEEEEEETTTCCEEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE
T ss_pred             CCEEEEEeCCcEEEEECCCCCEEEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc
Confidence            5556666  789999999988877644 4455677889997777887753221   236999999988776654321   


Q ss_pred             ---ccCceEEEEeCCCCEEEEEeCCCC-----cEEEEEccCCCcEE
Q psy14258        216 ---IVYPYGVTVDFPTKHVYWVDTYLD-----FIDRINYDGTDRKT  253 (440)
Q Consensus       216 ---~~~P~gl~vD~~~~~ly~~d~~~~-----~i~~~~~dG~~~~~  253 (440)
                         .......+..+.++.|+++.....     .+..++.++...+.
T Consensus        91 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (281)
T d1k32a2          91 TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP  136 (281)
T ss_dssp             ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE
T ss_pred             cCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE
Confidence               234556778888899998865432     45666666665443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.55  E-value=0.02  Score=49.31  Aligned_cols=228  Identities=7%  Similarity=-0.119  Sum_probs=122.3

Q ss_pred             eEEEEeecccceeeeEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCCC-----CceeEEeCCCCCcceeec
Q psy14258         48 THLYETIEAFWEECFGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNLS-----KPRGIALDPTSGYMFFTK  121 (440)
Q Consensus        48 ~ll~s~~~~~~~~~I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~-----~I~~~~~~~~~~~~~~~~  121 (440)
                      .+.|+....     |..+++.+...+ |.-....  ..+..+.+.+++|.|+....+     .|+.+...+.....+   
T Consensus        14 ~v~f~~~~d-----l~~~d~~~g~~~~Lt~~~~~--~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l---   83 (281)
T d1k32a2          14 RIIFVCCDD-----LWEHDLKSGSTRKIVSNLGV--INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI---   83 (281)
T ss_dssp             EEEEEETTE-----EEEEETTTCCEEEEECSSSE--EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC---
T ss_pred             EEEEEeCCc-----EEEEECCCCCEEEEecCCCc--ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe---
Confidence            577777788     999999987766 4332233  777889999999988754322     366666655443222   


Q ss_pred             cccccceeeccccccce-eeeecCCcEEEe---------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEE-E
Q psy14258        122 WGATRPMLERSLLDGTE-RFPMVTHKIVYP---------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFT-K  190 (440)
Q Consensus       122 ~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywt-d  190 (440)
                      +.... ........... +..+.++.|+++         ..+...+.++...+....   .........+ .+.++.. .
T Consensus        84 t~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~  158 (281)
T d1k32a2          84 TYFSG-KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GPATHILFAD-GRRVIGRNT  158 (281)
T ss_dssp             CCCCE-EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CSCSEEEEET-TEEEEEESC
T ss_pred             eecCC-CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC---CccceeeecC-CCeEEEeec
Confidence            00000 00111123344 666677778876         245666777665543321   2222333333 3333333 2


Q ss_pred             cCCC--------CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC--CCcEEEEEccCCCcEEEecCCcc
Q psy14258        191 WGAT--------RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY--LDFIDRINYDGTDRKTIRKGFPV  260 (440)
Q Consensus       191 ~~~~--------~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~--~~~i~~~~~dG~~~~~i~~~~~~  260 (440)
                      ....        .................. ............  .+.+++....  ...|+.++++|...+.+.... .
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~-~  234 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIV--GHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-D  234 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEE--TTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-S
T ss_pred             cccceeeeeccCCcceeeeeccccceeecc-CCccccceeeee--ccccceecccccccceEEEeCCCCceEEeecCC-C
Confidence            2111        011122222222211111 111122223333  4566665543  348999999999888775532 2


Q ss_pred             CceeeeeEecCEEEEEecCCCeEEEEeccCCCceEE
Q psy14258        261 QNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYET  296 (440)
Q Consensus       261 ~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~  296 (440)
                      ..+..++.++..|+|+.  .+.|+.++..+|+...+
T Consensus       235 ~~~~~~SpDG~~I~f~~--~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         235 YYPRHLNTDGRRILFSK--GGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             SCEEEEEESSSCEEEEE--TTEEEEECTTTCCEEEC
T ss_pred             cccccCcCCCCEEEEEe--CCEEEEEECCCCCEEEe
Confidence            23456777888998865  46799999877765543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.41  E-value=0.019  Score=52.06  Aligned_cols=192  Identities=11%  Similarity=0.166  Sum_probs=110.7

Q ss_pred             CCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe------cC---EEEEEecCC--Ce--EEEEeccCCCc
Q psy14258        227 PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF------EN---NLFVTSWRN--QS--IIRVNKFNSDD  293 (440)
Q Consensus       227 ~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~------~~---~ly~td~~~--~~--i~~~~~~~g~~  293 (440)
                      ....++=+|.. .-|+..+++|..+..+..+    .+..+.+.      ++   .++.++...  .+  ++.++...+..
T Consensus        39 ~~SlI~gTdK~-~Gl~vYdL~G~~l~~~~~G----r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          39 QNSKLITTNKK-SGLAVYSLEGKMLHSYHTG----KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGCEEEEEETT-SCCEEEETTCCEEEECCSS----CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             CccEEEEEcCc-CCEEEEcCCCcEEEecccC----CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            44556666644 4488888988877665433    34444432      22   456666542  33  44555432211


Q ss_pred             eE-------EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEc--CCCCCC-ceeeeeecCCCCceEEEE
Q psy14258        294 YE-------TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTF--KRDGTT-EQAIMPITDLKRPSVIDY  363 (440)
Q Consensus       294 ~~-------~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~--~~~~~~-~~~~~~~~~~~~p~~l~~  363 (440)
                      ..       .......++|+.+++....     ...++++++. .+.+....+  ++.+.. ......+..-..+.|+++
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~-----g~~~afv~~k-~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVv  187 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKT-----GKYYAMVTGK-EGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAA  187 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTT-----CCEEEEEECS-SSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEE
T ss_pred             ccccccccccccccCcceEEEEEecCCC-----CeEEEEEEcC-CceEEEEEEEcCCCCceeeEeeeccCCCCccceEEE
Confidence            11       1122335788888863221     1245666654 366655544  333111 111222233346779999


Q ss_pred             EcCCCEEEEEECCCCeEEEEecC---CCCeEEEEEC-C---CCCeeeEEEecC---CCcEEEEeCCCCeEEEEEeCC
Q psy14258        364 HEKEEYIYYAELTSYVIERRKMF---GRGKEVVIDT-G---IYNVEGMAVDWM---ANNLYWTDAGIGTINVAKISD  430 (440)
Q Consensus       364 d~~~~~vy~~d~~~~~I~r~~~~---g~~~~~~~~~-~---~~~~~glAvD~~---~~~lYwtd~~~~~I~~~~~~g  430 (440)
                      |..+++||+++.. ..|++...+   +...+.+... +   ...|+|||+=..   .+.|..++.+.++..+++-.+
T Consensus       188 Dde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         188 DDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             ETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9999999999864 468888775   2334444332 2   257999997432   458888899999999998765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.034  Score=47.60  Aligned_cols=235  Identities=7%  Similarity=-0.033  Sum_probs=123.0

Q ss_pred             EEEEEcCCC--CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccC
Q psy14258        186 MFFTKWGAT--RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQ  261 (440)
Q Consensus       186 lywtd~~~~--~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~  261 (440)
                      -|.++....  ...|+.++.||++.+.+.... ......+..|.+++|.++.....  .+...+.++...+.+...  ..
T Consensus         7 ay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   83 (269)
T d2hqsa1           7 AYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PR   83 (269)
T ss_dssp             EEEEECSSSSCCEEEEEEETTSCSCEEEEEES-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC--SS
T ss_pred             EEEEEeCCCCceEEEEEEcCCCCCcEEEecCC-CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee--ec
Confidence            366665432  126999999999999887643 22234578889999977654443  577777777777666553  22


Q ss_pred             ceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEE-EecCCCCeEEEEeccCCCCCCCCCceeEEeec-CCccEEEEE
Q psy14258        262 NLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYET-IANFSRPFAIHIYHRQKQPDALKPSTFLLYAK-GKPAIIKGL  337 (440)
Q Consensus       262 ~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~-~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~-~~~~~I~~i  337 (440)
                      ........  +..+.+.....+............... ..............  .     ..+..++... .....|...
T Consensus        84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~g~~~i~~~  156 (269)
T d2hqsa1          84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF--P-----DSQNLAFTSDQAGRPQVYKV  156 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEEC--T-----TSSEEEEEECTTSSCEEEEE
T ss_pred             ccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccc--c-----ccccceecccccCCceEeee
Confidence            33333333  334433332222211111111111111 10000011111110  0     1122333332 223467777


Q ss_pred             EcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEE
Q psy14258        338 TFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYW  415 (440)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYw  415 (440)
                      ++++. ..   .............++.+.+..+++.+..  ...|+..+..+...+.....  ......++.+.++.|++
T Consensus       157 ~~~~~-~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~p~~SPDG~~i~f  230 (269)
T d2hqsa1         157 NINGG-AP---QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST--FLDETPSLAPNGTMVIY  230 (269)
T ss_dssp             ETTSS-CC---EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS--SSCEEEEECTTSSEEEE
T ss_pred             ecccc-cc---eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecC--ccccceEECCCCCEEEE
Confidence            77666 11   1111112233355677888888877644  44677777776555443322  33456688888999977


Q ss_pred             Ee--CCCCeEEEEEeCCCeeeEEe
Q psy14258        416 TD--AGIGTINVAKISDFSIRKVL  437 (440)
Q Consensus       416 td--~~~~~I~~~~~~g~~~~~~l  437 (440)
                      +.  .+...|.+++++|+. .+.|
T Consensus       231 ~s~~~~~~~l~~~~~dg~~-~~~l  253 (269)
T d2hqsa1         231 SSSQGMGSVLNLVSTDGRF-KARL  253 (269)
T ss_dssp             EEEETTEEEEEEEETTSCC-EEEC
T ss_pred             EEcCCCCcEEEEEECCCCC-EEEE
Confidence            64  345679999999944 4433

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.053  Score=48.18  Aligned_cols=271  Identities=7%  Similarity=-0.046  Sum_probs=153.9

Q ss_pred             cccce-eeeecCCcEEEe--ceEEEEecCCceE----EEEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC
Q psy14258        134 LDGTE-RFPMVTHKIVYP--EAIYFCTHYMEHC----MIAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG  205 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~--~~I~~~~~dg~~~----~~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG  205 (440)
                      ..+.. ++.+.++.|+-.  +.|.+-++.....    ..... .......++++.|...+|+.+...   +.|...++..
T Consensus        52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d---g~i~iwd~~~  128 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---STLSIWDLAA  128 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---SEEEEEECCC
T ss_pred             CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc---cccccccccc
Confidence            34566 777666555433  6677777754221    11111 122346799999865556555443   5788888876


Q ss_pred             CCceeEEe--cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCC
Q psy14258        206 TERFPMVT--HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQ  281 (440)
Q Consensus       206 ~~~~~l~~--~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~  281 (440)
                      ...+....  ........+++++.+..++.+. ....|...++..........+ .......+++..+  .++... ..+
T Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~~~~~~-~d~  205 (337)
T d1gxra_         129 PTPRIKAELTSSAPACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGG-LDN  205 (337)
T ss_dssp             C--EEEEEEECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccccccccccccccccccccc-ccc
Confidence            54433322  2233456778886666665554 556788888765544433332 1334567776543  555544 467


Q ss_pred             eEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceE
Q psy14258        282 SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSV  360 (440)
Q Consensus       282 ~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~  360 (440)
                      .|...+..+++..........+..+.+.          |+ .+|+.+. ..+.|+..+++..    +.......-....+
T Consensus       206 ~v~i~d~~~~~~~~~~~~~~~i~~l~~~----------~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~i~~  270 (337)
T d1gxra_         206 TVRSWDLREGRQLQQHDFTSQIFSLGYC----------PTGEWLAVGM-ESSNVEVLHVNKP----DKYQLHLHESCVLS  270 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEEC----------TTSSEEEEEE-TTSCEEEEETTSS----CEEEECCCSSCEEE
T ss_pred             cccccccccceeecccccccceEEEEEc----------ccccccceec-ccccccccccccc----ccccccccccccce
Confidence            7777777666655444333344455433          23 3344433 3477888887665    22222222334678


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~  428 (440)
                      ++|.+.++.++ +-...+.|+..+......... ...-..+..+++.+.++.|... ...++|.+.++
T Consensus       271 v~~s~~g~~l~-s~s~Dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~-s~D~~I~vWdl  335 (337)
T d1gxra_         271 LKFAYCGKWFV-STGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTG-SGDKKATVYEV  335 (337)
T ss_dssp             EEECTTSSEEE-EEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEE-ETTSCEEEEEE
T ss_pred             EEECCCCCEEE-EEeCCCeEEEEECCCCCEEEE-ccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEE
Confidence            99999877554 444578888888765433222 2244678889998766655443 44567877765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.047  Score=46.92  Aligned_cols=280  Identities=10%  Similarity=0.014  Sum_probs=144.6

Q ss_pred             ccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258        133 LLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE  207 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~  207 (440)
                      -..... ++.+.++ +.++    +.|.+-++........+........+++.+|....+......   ..+...+.....
T Consensus        17 ~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   92 (317)
T d1vyhc1          17 RSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFE   92 (317)
T ss_dssp             SSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT---SCCCEEETTSSC
T ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc---cccccccccccc
Confidence            344556 7766555 4444    678888876544433334445667899999854444444433   244444443333


Q ss_pred             ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEE
Q psy14258        208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRV  286 (440)
Q Consensus       208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~  286 (440)
                      ..............+.+.+.+..+..+. ..+.+...++..........+. ......+++..+ .++.+-...+.|...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTVRVW  170 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccceeeeccCCCceEEeec-cCcceeEeecccceeeeEEccC-CCcceeeecccCCCEEEEEeCCCeEEEE
Confidence            2222222233455667776666665544 4556666666543333222221 234556666544 444444456677766


Q ss_pred             eccCCCceEEEecCCCCeEEEEeccCCCCCCC------------CCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC
Q psy14258        287 NKFNSDDYETIANFSRPFAIHIYHRQKQPDAL------------KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD  354 (440)
Q Consensus       287 ~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~------------~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~  354 (440)
                      +..+++....+.....+.....+.+..+....            .+..+++.+ +..+.|+..++...    .....+.+
T Consensus       171 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~----~~~~~~~~  245 (317)
T d1vyhc1         171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-SRDKTIKMWDVSTG----MCLMTLVG  245 (317)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-ETTSEEEEEETTTT----EEEEEEEC
T ss_pred             eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec-cCCCEEEEEECCCC----cEEEEEeC
Confidence            66555544444332222211122221111000            112333333 33467777776544    22222322


Q ss_pred             C-CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258        355 L-KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINV  425 (440)
Q Consensus       355 ~-~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~  425 (440)
                      . ....++++.+.+..|+.+ ...+.|...++........+...-..+..|++.+.++.|+-+. ..++|.+
T Consensus       246 ~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s-~Dg~i~i  315 (317)
T d1vyhc1         246 HDNWVRGVLFHSGGKFILSC-ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS-VDQTVKV  315 (317)
T ss_dssp             CSSCEEEEEECSSSSCEEEE-ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE-TTSEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEE-ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEE
Confidence            2 245689999987766544 4678898888865433333344456788899987666665443 3455554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.13  E-value=0.069  Score=48.23  Aligned_cols=191  Identities=10%  Similarity=-0.043  Sum_probs=105.4

Q ss_pred             ceeEEEEeecccceeeeEEEecCCCcee-eeeecccceEEEEEeee----cc---cEEEEEEcCC--CCceeEEeCCCCC
Q psy14258         46 VKTHLYETIEAFWEECFGPMDIEEWDEG-LSFLTFAQEAIYFCTHY----ME---HCMIAIDLNL--SKPRGIALDPTSG  115 (440)
Q Consensus        46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~----~~---~~ly~~d~~~--~~I~~~~~~~~~~  115 (440)
                      ..+|++.+.+.   .-|...+|+|.... +...  .  +-.||+-+    ..   ..++.++...  .+|....++....
T Consensus        39 ~~SlI~gTdK~---~Gl~vYdL~G~~l~~~~~G--r--~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          39 QNSKLITTNKK---SGLAVYSLEGKMLHSYHTG--K--LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGCEEEEEETT---SCCEEEETTCCEEEECCSS--C--EEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             CccEEEEEcCc---CCEEEEcCCCcEEEecccC--C--cCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            45688877653   33889999988776 3322  1  22222221    11   1234444432  2344444443221


Q ss_pred             cceeeccccccceeeccccccce-ee--eecCCcEEEe-----ceEEEEec--C--CceEEEEEc--CCCCCceEEEEcC
Q psy14258        116 YMFFTKWGATRPMLERSLLDGTE-RF--PMVTHKIVYP-----EAIYFCTH--Y--MEHCMIAID--LNLSKPRGIALDP  181 (440)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~p~~-av--D~~~~~lY~~-----~~I~~~~~--d--g~~~~~~~~--~~~~~P~~iavd~  181 (440)
                      . +... ..+.......+..|.| ++  +..++.+|..     +++....+  +  |.....++.  ..-..++|+++|.
T Consensus       112 ~-l~~~-~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd  189 (353)
T d1h6la_         112 T-LQSI-TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD  189 (353)
T ss_dssp             E-EEEC-SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET
T ss_pred             c-cccc-cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC
Confidence            1 1000 1111112345667889 87  7777877754     55544332  3  322222222  1235799999999


Q ss_pred             CCCeEEEEEcCCCCCcEEEEeCC---CCCceeEEec---C-ccCceEEEEeC---CCCEEEEEeCCCCcEEEEEccC
Q psy14258        182 TSGYMFFTKWGATRPMLERSLLD---GTERFPMVTH---K-IVYPYGVTVDF---PTKHVYWVDTYLDFIDRINYDG  248 (440)
Q Consensus       182 ~~g~lywtd~~~~~~~I~r~~~d---G~~~~~l~~~---~-~~~P~gl~vD~---~~~~ly~~d~~~~~i~~~~~dG  248 (440)
                      .++.||+++..   ..|++..++   +...+.+...   . ..-|.||||=.   .++.|..++.+.++...++..+
T Consensus       190 e~~~LyisEE~---~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         190 EYGSLYIAEED---EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             TTTEEEEEETT---TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             CCCcEEEecCc---cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            99999999986   489998876   3333333332   1 34699999842   2457777777666666665544

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=7e-05  Score=47.42  Aligned_cols=27  Identities=15%  Similarity=0.354  Sum_probs=24.8

Q ss_pred             CCCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         19 IDGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        19 ~~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      .++.|+|+|.+++++|+|+ +.||.|.+
T Consensus         5 ~NGgC~~~C~~~~g~~~C~C~~Gy~L~~   32 (50)
T d1autl2           5 DNGGCTHYCLEEVGWRRCSCAPGYKLGD   32 (50)
T ss_dssp             GGGGCSSEEEECSSSEEEECCTTEEECT
T ss_pred             CCCCcccEeecCCCCeEEECCCCCEECC
Confidence            3689999999999999999 99999976

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0001  Score=46.57  Aligned_cols=32  Identities=16%  Similarity=0.436  Sum_probs=26.2

Q ss_pred             cccCC-CCCCCCCCcc------cCCCceEEc-cCCeeeec
Q psy14258         14 ADECL-IDGSCDQTCT------NTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        14 ~~~C~-~~~~Cs~~C~------n~~~~~~C~-~~g~~l~~   45 (440)
                      .+||. .+++|+|+|.      +..++|+|+ ++||.|.+
T Consensus         4 cneC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~   43 (50)
T d1ijqa2           4 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR   43 (50)
T ss_dssp             TSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECT
T ss_pred             ccccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECC
Confidence            36776 4789999996      455799999 99999975

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.02  E-value=0.00012  Score=46.62  Aligned_cols=28  Identities=21%  Similarity=0.496  Sum_probs=25.4

Q ss_pred             CCCCCCCCcccCCCceEEc-cCCeeeecc
Q psy14258         19 IDGSCDQTCTNTHLSYTYT-DEGFSFQGV   46 (440)
Q Consensus        19 ~~~~Cs~~C~n~~~~~~C~-~~g~~l~~~   46 (440)
                      .++.|+|+|.+++++|.|. +.||.|.++
T Consensus         4 ~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D   32 (51)
T d1kigl_           4 DNGGCDQFCREERSEVRCSCAHGYVLGDD   32 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECTT
T ss_pred             CCCCcccEeEcCCCcEEeEcCCCCEECCC
Confidence            4789999999999999999 999999763

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.00  E-value=0.023  Score=52.43  Aligned_cols=157  Identities=10%  Similarity=0.032  Sum_probs=94.3

Q ss_pred             cCceeeeeE-----ecCEEEEEecCCCeEEEEeccCCCceEEEe--cCCCCeEEEEeccCCCCCCCCCceeEEeecC---
Q psy14258        260 VQNLYDITV-----FENNLFVTSWRNQSIIRVNKFNSDDYETIA--NFSRPFAIHIYHRQKQPDALKPSTFLLYAKG---  329 (440)
Q Consensus       260 ~~~p~gl~~-----~~~~ly~td~~~~~i~~~~~~~g~~~~~~~--~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~---  329 (440)
                      ..|| .++.     ++.+||+.|..+.+|.+++..+-+..+++.  +...+.++.++.   .|.    -.|++-...   
T Consensus        85 ~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~---~p~----T~YV~~~~e~~v  156 (459)
T d1fwxa2          85 LHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQK---WPR----SNYVFCNGEDET  156 (459)
T ss_dssp             BCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECC---SSB----CSEEEEEECSCE
T ss_pred             cCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeeccc---CCC----eEEEEccCcccc
Confidence            5677 3443     456999999999999999998777655543  344566655442   111    022221111   


Q ss_pred             --------------CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC------------------
Q psy14258        330 --------------KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS------------------  377 (440)
Q Consensus       330 --------------~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~------------------  377 (440)
                                    ..+.+..++.+..    ++...+.--.+|..+++++.++++|++...+                  
T Consensus       157 P~pndg~~l~d~~~y~~~~t~ID~~tm----~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~  232 (459)
T d1fwxa2         157 PLVNDGTNMEDVANYVNVFTAVDADKW----EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV  232 (459)
T ss_dssp             ESSCSSSSTTCGG-EEEEEEEEETTTT----EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred             ccCCCCccccchhhcceEEEEEecCCc----eEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEE
Confidence                          0122334444433    3333333234788999999999999986322                  


Q ss_pred             -------------------CeEEEEecC---CCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        378 -------------------YVIERRKMF---GRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       378 -------------------~~I~r~~~~---g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                                         +.+..++..   +......+..+ .+|.|+.+++.++.+|.+.....++.|+++.
T Consensus       233 V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         233 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                               111222221   11111112222 5799999999999999999999999999984

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=7.3e-05  Score=47.55  Aligned_cols=27  Identities=26%  Similarity=0.614  Sum_probs=24.9

Q ss_pred             CCCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258         19 IDGSCDQTCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        19 ~~~~Cs~~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      .++.|+|+|.|++++|.|. +.||.|.+
T Consensus         6 ~NGgC~h~C~n~~g~~~C~C~~Gy~L~~   33 (51)
T d2p3ua1           6 DNGDCDQFCHEEQNSVVCSCARGYTLAD   33 (51)
T ss_dssp             GGGGCSSEEEEETTEEEEECCTTEEECT
T ss_pred             CCCCcccEeecCCCCeEeEcCCCCEECC
Confidence            3689999999999999999 99999976

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.096  Score=44.56  Aligned_cols=228  Identities=9%  Similarity=-0.033  Sum_probs=123.2

Q ss_pred             eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258        152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV  231 (440)
Q Consensus       152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l  231 (440)
                      .|.+++.||++.+.+... ......-+..|...+|.|+........+.....++...+.+.. ....+......+.+.+|
T Consensus        20 ~l~i~d~dG~~~~~l~~~-~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSCEEEEEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-CSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCcEEEecC-CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee-eecccccceecCCCCee
Confidence            588899999998888653 3344567888877788666544433678888988888765554 34566778888888888


Q ss_pred             EEEeCCCCcEEEEEccC--CCcEEEecCCccCceeeeeEecCEEEEEecC--CCeEEEEeccCCCceEEEecCCCCeEEE
Q psy14258        232 YWVDTYLDFIDRINYDG--TDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQSIIRVNKFNSDDYETIANFSRPFAIH  307 (440)
Q Consensus       232 y~~d~~~~~i~~~~~dG--~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~~i~~~~~~~g~~~~~~~~~~~p~~~~  307 (440)
                      .+.....+.........  .....................++.++++...  ...|+..+...+....+.... ...   
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~-~~~---  173 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG-SQN---  173 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS-SEE---
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccc-ccc---
Confidence            87665554333333322  2222222221111111222334456665533  335666666554433322111 111   


Q ss_pred             EeccCCCCCCCCCceeEEeecCC--ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC--CCCeEEEE
Q psy14258        308 IYHRQKQPDALKPSTFLLYAKGK--PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL--TSYVIERR  383 (440)
Q Consensus       308 v~~~~~qp~~~~~~~~l~~~~~~--~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~--~~~~I~r~  383 (440)
                       .++...|    ...++++....  ...|..++.++.    ...+. .....-....+.|++++|+++..  ....|+++
T Consensus       174 -~~~~~sp----dg~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~  243 (269)
T d2hqsa1         174 -QDADVSS----DGKFMVMVSSNGGQQHIAKQDLATG----GVQVL-SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV  243 (269)
T ss_dssp             -EEEEECT----TSSEEEEEEECSSCEEEEEEETTTC----CEEEC-CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             -ccccccc----ccceeEEEeecCCceeeeEeecccc----cceEe-ecCccccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence             1111111    12333333222  234555554443    11111 11112235578999999987753  35679999


Q ss_pred             ecCCCCeEEEEE
Q psy14258        384 KMFGRGKEVVID  395 (440)
Q Consensus       384 ~~~g~~~~~~~~  395 (440)
                      +++|+..+.+..
T Consensus       244 ~~dg~~~~~lt~  255 (269)
T d2hqsa1         244 STDGRFKARLPA  255 (269)
T ss_dssp             ETTSCCEEECCC
T ss_pred             ECCCCCEEEEeC
Confidence            999987655543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.70  E-value=0.16  Score=44.04  Aligned_cols=272  Identities=11%  Similarity=0.038  Sum_probs=129.7

Q ss_pred             ccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        133 LLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       133 ~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      -....+ ++.+.+..|.-+   +.|.+-++........+.........+++.|...+++.....   ..|...+......
T Consensus        55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---~~i~~~~~~~~~~  131 (340)
T d1tbga_          55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD---NICSIYNLKTREG  131 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETT---CCEEEEESSSSCS
T ss_pred             CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccc---ceeeccccccccc
Confidence            344556 666655533333   678888887655444444444667899999965566555544   3555555443222


Q ss_pred             eeEEe---cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe-cCEEEEEecCCCeEE
Q psy14258        209 FPMVT---HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF-ENNLFVTSWRNQSII  284 (440)
Q Consensus       209 ~~l~~---~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~-~~~ly~td~~~~~i~  284 (440)
                      .....   .................+.... ...................... .......... .+.++.+-...+.|.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~  209 (340)
T d1tbga_         132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSS-GDTTCALWDIETGQQTTTFTGH-TGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEEEETTEEEEEE-TTTEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ccccceeccccccccccccccccccccccc-cccccccccccccccccccccc-ceeEeeeccccccceeEEeecCceEE
Confidence            11110   0001111111111223333222 2222222222221111111110 1111222222 224555555566666


Q ss_pred             EEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeee--c-CCCCceE
Q psy14258        285 RVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPI--T-DLKRPSV  360 (440)
Q Consensus       285 ~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~--~-~~~~p~~  360 (440)
                      ..+..+++....+..-. ....+.+.          |++.++++-+..+.|+..++...    ......  . .......
T Consensus       210 i~d~~~~~~~~~~~~h~~~i~~v~~~----------p~~~~l~s~s~d~~i~~~~~~~~----~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         210 LWDVREGMCRQTFTGHESDINAICFF----------PNGNAFATGSDDATCRLFDLRAD----QELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEC----------TTSSEEEEEETTSCEEEEETTTT----EEEEEECCTTCCSCEEE
T ss_pred             EEECCCCcEEEEEeCCCCCeEEEEEC----------CCCCEEEEEeCCCeEEEEeeccc----ccccccccccccCceEE
Confidence            66665555544443322 23444433          23223333333477777777655    211111  1 1223468


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINV  425 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~  425 (440)
                      ++|++.+..|+. -...+.|+..++........+...-..+..|++.+.+..|+-.. ..++|.+
T Consensus       276 ~~~s~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s-~Dg~v~i  338 (340)
T d1tbga_         276 VSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS-WDSFLKI  338 (340)
T ss_dssp             EEECSSSCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSCEEE
T ss_pred             EEECCCCCEEEE-EECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc-cCCEEEE
Confidence            999987776654 44678898888865444333333446788899887666554433 3345543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.51  E-value=0.0091  Score=55.17  Aligned_cols=225  Identities=11%  Similarity=0.078  Sum_probs=126.2

Q ss_pred             CCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-ccCceEEEEeCCCCEEEEEeCCCCc-------------------EE
Q psy14258        183 SGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-IVYPYGVTVDFPTKHVYWVDTYLDF-------------------ID  242 (440)
Q Consensus       183 ~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-~~~P~gl~vD~~~~~ly~~d~~~~~-------------------i~  242 (440)
                      .++||.+|..+  +||.|.+++--....++..+ ...|.|+.+....+..|+.......                   +.
T Consensus        99 GrylFVNDkan--~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          99 GRFLFMNDKAN--TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEETTT--TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             eeEEEEEcCCC--ceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            36899999886  69999999987666676653 5578899987777777877533322                   23


Q ss_pred             EEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCC
Q psy14258        243 RINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKP  320 (440)
Q Consensus       243 ~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~  320 (440)
                      .++  ....++..+-.--..|..+++  ++.++|+|...+.....+.-.+.++..-         +.++...+.-.....
T Consensus       177 ~ID--~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~---------i~V~n~~rie~av~~  245 (459)
T d1fwxa2         177 AVD--ADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH---------IVVFNIAEIEKAIAA  245 (459)
T ss_dssp             EEE--TTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE---------EEEEEHHHHHHHHHH
T ss_pred             EEe--cCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceE---------EEEechHHhHHhhhc
Confidence            343  334443333100123444444  5669999876543321111111122111         122211100000000


Q ss_pred             ceeEEeecCCccEEEEEEcCCCCCCcee--eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC--------CC-C
Q psy14258        321 STFLLYAKGKPAIIKGLTFKRDGTTEQA--IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF--------GR-G  389 (440)
Q Consensus       321 ~~~l~~~~~~~~~I~~i~~~~~~~~~~~--~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~--------g~-~  389 (440)
                      ..|-.+     +.+..++.... .....  .+|+.  ..|.|++++|+++++|++..-+.++..+++.        .. .
T Consensus       246 Gk~~ei-----ngV~VVD~~~~-~~~~v~~yIPVp--KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~  317 (459)
T d1fwxa2         246 GDYQEL-----NGVKVVDGRKE-ASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP  317 (459)
T ss_dssp             TCSEEE-----TTEEEEECSGG---CSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-G
T ss_pred             CCcEEe-----CCceeeccccc-CCcceeEEEecC--CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCc
Confidence            011111     23344444322 11122  34554  4799999999999999999999999999874        21 1


Q ss_pred             eEEE-EECCC-CCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258        390 KEVV-IDTGI-YNVEGMAVDWMANNLYWTDAGIGTINVAKIS  429 (440)
Q Consensus       390 ~~~~-~~~~~-~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~  429 (440)
                      +.++ .+..+ -+|---++|- .++.|-|-.-...|..-+++
T Consensus       318 ~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         318 RSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             GGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHH
T ss_pred             cccEEeecccCcCccccccCC-CceEEEEeeccceEEEEecc
Confidence            2222 22222 3588889996 56999997777777766653

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00057  Score=44.28  Aligned_cols=30  Identities=27%  Similarity=0.643  Sum_probs=25.2

Q ss_pred             cCC-CCCCCCCCcccCCC-ceEEc-cCCeeeec
Q psy14258         16 ECL-IDGSCDQTCTNTHL-SYTYT-DEGFSFQG   45 (440)
Q Consensus        16 ~C~-~~~~Cs~~C~n~~~-~~~C~-~~g~~l~~   45 (440)
                      +|. .++.|+|+|.++++ +|.|. +.||.|++
T Consensus         2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~   34 (57)
T d1rfnb_           2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAE   34 (57)
T ss_dssp             CTTGGGGGCSSEEEECTTSCEEEECCTTEEECT
T ss_pred             ccCCCCCCcccEeeeCCCCCeEeECCCCCEECC
Confidence            355 47899999999874 89999 99999976

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.18  E-value=0.32  Score=41.59  Aligned_cols=231  Identities=8%  Similarity=0.002  Sum_probs=121.7

Q ss_pred             cccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258        134 LDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER  208 (440)
Q Consensus       134 ~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~  208 (440)
                      ..... |+.+.++.|+-+   +.|.+-+++...+..... .......++++.| +|.++.+...   ..+...+..+...
T Consensus        13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~~~~~~d---~~v~~~~~~~~~~   88 (299)
T d1nr0a2          13 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTVSWD---DHLKVVPAGGSGV   88 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCEEEEETT---TEEEEECSSSSSS
T ss_pred             CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cceeecccce---eeEEEeccCCccc
Confidence            34556 776655544433   678888876544433322 2234568899988 5777776654   4777777765432


Q ss_pred             e---eEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEE
Q psy14258        209 F---PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSII  284 (440)
Q Consensus       209 ~---~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~  284 (440)
                      .   .+.......|..+++.+.+..+.....  +.+...+  ......+..   ...+..+++..+ .++.+-..++.|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~--~~i~~~~--~~~~~~~~~---~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          89 DSSKAVANKLSSQPLGLAVSADGDIAVAACY--KHIAIYS--HGKLTEVPI---SYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CTTSCCEEECSSCEEEEEECTTSSCEEEEES--SEEEEEE--TTEEEEEEC---SSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccccccccccccc--ccccccc--ccccccccc---cccccccccccccccccccccccccc
Confidence            2   122222346788888866666655543  3444433  111222211   123455666544 3333334467777


Q ss_pred             EEeccCCCceEEE--ecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceE
Q psy14258        285 RVNKFNSDDYETI--ANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSV  360 (440)
Q Consensus       285 ~~~~~~g~~~~~~--~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~  360 (440)
                      ..+..+++...+.  .....+..+.+.          |+ .+|+.+. ..+.|+..++... ........... -....+
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~l~~~~-~d~~i~~~~~~~~-~~~~~~~~~~~h~~~v~~  229 (299)
T d1nr0a2         162 VYKLSGASVSEVKTIVHPAEITSVAFS----------NNGAFLVATD-QSRKVIPYSVANN-FELAHTNSWTFHTAKVAC  229 (299)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEEC----------TTSSEEEEEE-TTSCEEEEEGGGT-TEESCCCCCCCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccc----------cccccccccc-ccccccccccccc-cccccccccccccccccc
Confidence            7676554433322  122233444333          23 3444443 3477888887654 11000111111 224568


Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258        361 IDYHEKEEYIYYAELTSYVIERRKMFGR  388 (440)
Q Consensus       361 l~~d~~~~~vy~~d~~~~~I~r~~~~g~  388 (440)
                      +++.+.+..++... ..+.|+.-++...
T Consensus       230 l~~s~~~~~l~sgs-~dg~i~iwd~~~~  256 (299)
T d1nr0a2         230 VSWSPDNVRLATGS-LDNSVIVWNMNKP  256 (299)
T ss_dssp             EEECTTSSEEEEEE-TTSCEEEEETTCT
T ss_pred             ccccccccceEEEc-CCCEEEEEECCCC
Confidence            99999877665444 5788888887753

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.00074  Score=43.02  Aligned_cols=30  Identities=27%  Similarity=0.667  Sum_probs=24.7

Q ss_pred             CC-CCCCCCCCcccCCC-ceEEc-cCCeeeecc
Q psy14258         17 CL-IDGSCDQTCTNTHL-SYTYT-DEGFSFQGV   46 (440)
Q Consensus        17 C~-~~~~Cs~~C~n~~~-~~~C~-~~g~~l~~~   46 (440)
                      |. .++.|+|+|.++++ +|.|. +.||.|.++
T Consensus         2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D   34 (53)
T d2bz6l1           2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLAD   34 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTT
T ss_pred             CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCC
Confidence            44 36899999999886 57899 999999763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.4  Score=40.55  Aligned_cols=269  Identities=7%  Similarity=-0.013  Sum_probs=130.8

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|++.++.| .+-...+.|+..++.......          .+......+.. ++++.+..+...   ..+...+
T Consensus        19 ~I~~l~~sp~~~~l-~s~s~Dg~i~iWd~~~~~~~~----------~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          19 PVTRVIFHPVFSVM-VSASEDATIKVWDYETGDFER----------TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             CEEEEEECSSSSEE-EEEESSSCEEEEETTTCCCCE----------EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCEEE----------EEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            38999999876554 454455677665554222111          12222233444 555544433333   3444444


Q ss_pred             cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258        158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY  237 (440)
Q Consensus       158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~  237 (440)
                      ...................+...+....+......   +.+...++........+.........+++++.+..|..+. .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  163 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS-N  163 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccC---cceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe-C
Confidence            44433333333334567778888865555544433   4677777654443333333344566788876666555443 4


Q ss_pred             CCcEEEEEccCCCcEEEecCCccCceeeee---------------------EecCEEEEEecCCCeEEEEeccCCCceEE
Q psy14258        238 LDFIDRINYDGTDRKTIRKGFPVQNLYDIT---------------------VFENNLFVTSWRNQSIIRVNKFNSDDYET  296 (440)
Q Consensus       238 ~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~---------------------~~~~~ly~td~~~~~i~~~~~~~g~~~~~  296 (440)
                      .+.|...+...........+. ......++                     ...+.+..+-...+.|...+..+++....
T Consensus       164 d~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             TSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCeEEEEeeccceeeEEEecC-CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence            456666665433322221110 00011111                     11223334444456666666655554444


Q ss_pred             EecCCC-CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEE
Q psy14258        297 IANFSR-PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAE  374 (440)
Q Consensus       297 ~~~~~~-p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d  374 (440)
                      +..-.. ...+.+.          |++.++++-+..+.|+..++...    .....+.+ -....+++|.+.++.|+-+ 
T Consensus       243 ~~~~~~~v~~~~~~----------~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~V~~~~~s~~~~~l~s~-  307 (317)
T d1vyhc1         243 LVGHDNWVRGVLFH----------SGGKFILSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLDFHKTAPYVVTG-  307 (317)
T ss_dssp             EECCSSCEEEEEEC----------SSSSCEEEEETTTEEEEECCTTS----CCCEEEECCSSCEEEEEECSSSSCEEEE-
T ss_pred             EeCCCCCEEEEEEC----------CCCCEEEEEECCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEE-
Confidence            433222 2333332          23223333333478888877554    11222222 2345689998877766543 


Q ss_pred             CCCCeEE
Q psy14258        375 LTSYVIE  381 (440)
Q Consensus       375 ~~~~~I~  381 (440)
                      ...++|+
T Consensus       308 s~Dg~i~  314 (317)
T d1vyhc1         308 SVDQTVK  314 (317)
T ss_dssp             ETTSEEE
T ss_pred             eCCCeEE
Confidence            3456664

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0024  Score=38.51  Aligned_cols=32  Identities=31%  Similarity=0.658  Sum_probs=27.1

Q ss_pred             eecccCCC-CCCCCC--CcccCCCceEEc-cCCeee
Q psy14258         12 VDADECLI-DGSCDQ--TCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus        12 ~d~~~C~~-~~~Cs~--~C~n~~~~~~C~-~~g~~l   43 (440)
                      +|+|||.. ...|.+  .|.|..++|+|. ++||..
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G   36 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG   36 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEES
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCcC
Confidence            57899984 467877  899999999999 999974

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.72  E-value=1.5  Score=40.11  Aligned_cols=103  Identities=9%  Similarity=0.030  Sum_probs=56.0

Q ss_pred             ceeEEeecCC--ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC------CCeEEEEecCCCCeEE
Q psy14258        321 STFLLYAKGK--PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT------SYVIERRKMFGRGKEV  392 (440)
Q Consensus       321 ~~~l~~~~~~--~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~------~~~I~r~~~~g~~~~~  392 (440)
                      +.++++...+  -..|+.++.++. ..   .....+-.....+ +.+.++.+|++...      ...|||++++|+....
T Consensus       331 ~~~~~~~s~~dg~~~ly~~~~~g~-~~---~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~  405 (470)
T d2bgra1         331 NSFYKIISNEEGYRHICYFQIDKK-DC---TFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT  405 (470)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCS-CC---EESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEE
T ss_pred             CCcEEEEeccCcCceeEEEeccCC-ce---eeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCcee
Confidence            4554443322  346777777766 11   1111222223333 34457889988543      2359999999876655


Q ss_pred             EEECCC----CCeeeEEEecCCCcEEEEeCCC--CeEEEEEe
Q psy14258        393 VIDTGI----YNVEGMAVDWMANNLYWTDAGI--GTINVAKI  428 (440)
Q Consensus       393 ~~~~~~----~~~~glAvD~~~~~lYwtd~~~--~~I~~~~~  428 (440)
                      .+...+    ......++-+.++.+--+-.+.  -.+...+.
T Consensus       406 ~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~  447 (470)
T d2bgra1         406 CLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS  447 (470)
T ss_dssp             ESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred             EecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEEC
Confidence            554322    2345688988888555444332  33555543

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.01  Score=33.18  Aligned_cols=31  Identities=35%  Similarity=0.714  Sum_probs=26.8

Q ss_pred             ccCCCCCCCCC-CcccCCCceEEc-cCCeeeec
Q psy14258         15 DECLIDGSCDQ-TCTNTHLSYTYT-DEGFSFQG   45 (440)
Q Consensus        15 ~~C~~~~~Cs~-~C~n~~~~~~C~-~~g~~l~~   45 (440)
                      |||+....|.. .|.|..|+|.|. .+||...+
T Consensus         2 dECsignpCGnGTCtNviGgFec~C~~GFepgp   34 (39)
T d1emoa2           2 DECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP   34 (39)
T ss_dssp             CGGGTTCSSSSSCEEECSSSEEECCSSSSCCCS
T ss_pred             CccccCCccCCceeeecccceEEeecCCcCCCc
Confidence            78998788888 899999999999 99987643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.46  E-value=1.4  Score=38.27  Aligned_cols=126  Identities=8%  Similarity=-0.112  Sum_probs=69.9

Q ss_pred             CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc
Q psy14258        172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR  251 (440)
Q Consensus       172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~  251 (440)
                      .....|+..+...+|.....+.. ..+.....+.......+...-...+.+++.+.+..+..+-...+.+...+......
T Consensus       116 ~~v~~v~~s~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~  194 (325)
T d1pgua1         116 GPISDISWDFEGRRLCVVGEGRD-NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF  194 (325)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSS-CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred             CcEEEEEECCCCCccceeecccc-ceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccccc
Confidence            34568888886555555554433 45666666533322222222234577888877777666555566676665432222


Q ss_pred             -EEEecC-CccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEe
Q psy14258        252 -KTIRKG-FPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIA  298 (440)
Q Consensus       252 -~~i~~~-~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~  298 (440)
                       ..+... ........+++..  +.++.+-...+.|...+..+++....+.
T Consensus       195 ~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~  245 (325)
T d1pgua1         195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  245 (325)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             ceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc
Confidence             222221 1122346777754  3666666667888888877776555544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.18  E-value=2  Score=36.02  Aligned_cols=230  Identities=7%  Similarity=-0.027  Sum_probs=116.1

Q ss_pred             eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258         82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT  157 (440)
Q Consensus        82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~  157 (440)
                      .+.+++|++.++.|. +-...+.|+..++.......         ......-....+ ++.+.+ .++.+   +.+...+
T Consensus        14 ~V~~l~~s~dg~~l~-s~s~Dg~v~vWd~~~~~~~~---------~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2          14 AITALSSSADGKTLF-SADAEGHINSWDISTGISNR---------VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVP   82 (299)
T ss_dssp             CEEEEEECTTSSEEE-EEETTSCEEEEETTTCCEEE---------CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEEC
T ss_pred             CcEEEEECCCCCEEE-EEcCCCeEEEEECCCCcEEE---------EEcCCCCCcEEEEEeeccc-eeecccceeeEEEec
Confidence            389999998766555 44444666655554221100         000011122344 555443 35544   6677766


Q ss_pred             cCCceEE---EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEE
Q psy14258        158 HYMEHCM---IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV  234 (440)
Q Consensus       158 ~dg~~~~---~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~  234 (440)
                      ..+....   .+.......+.++++.+....+..+..+    .+...+.. . ...+  .....+..+++.+.+..|+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~----~i~~~~~~-~-~~~~--~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK----HIAIYSHG-K-LTEV--PISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS----EEEEEETT-E-EEEE--ECSSCEEEEEECTTSCEEEEE
T ss_pred             cCCccccccccccccccccccccccccccccccccccc----cccccccc-c-cccc--ccccccccccccccccccccc
Confidence            6553321   1111123568899998854444444332    45554422 1 1111  112345678888766666665


Q ss_pred             eCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCC----CCeEEEE
Q psy14258        235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFS----RPFAIHI  308 (440)
Q Consensus       235 d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~----~p~~~~v  308 (440)
                      . ..+.|...++.+.....+.....-.....+++..+  .|+..+ .++.|...+..++........+.    ....+.+
T Consensus       155 ~-~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  232 (299)
T d1nr0a2         155 G-QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW  232 (299)
T ss_dssp             E-TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            4 55788888887655433322111234567777644  454444 46777777765554433222211    1233332


Q ss_pred             eccCCCCCCCCCceeEEeecCCccEEEEEEcCCC
Q psy14258        309 YHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD  342 (440)
Q Consensus       309 ~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~  342 (440)
                      .          |++.++++-+..+.|+..++...
T Consensus       233 s----------~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         233 S----------PDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             C----------TTSSEEEEEETTSCEEEEETTCT
T ss_pred             c----------ccccceEEEcCCCEEEEEECCCC
Confidence            2          33333443333478888887655

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.33  E-value=3.3  Score=36.28  Aligned_cols=148  Identities=9%  Similarity=-0.067  Sum_probs=82.3

Q ss_pred             cce-eeeecCCcEEEe---ceEEEEecCCceEE--EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce
Q psy14258        136 GTE-RFPMVTHKIVYP---EAIYFCTHYMEHCM--IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF  209 (440)
Q Consensus       136 p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~--~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~  209 (440)
                      ... |+.+.+..|..+   +.|.+.+.++...+  ..+........+|++.|...+|.-....   ..|...+++....+
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D---~~i~vWd~~~~~~~   86 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD---RNAYVWTLKGRTWK   86 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT---SCEEEEEEETTEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC---CeEEEEeecccccc
Confidence            355 777776655555   67888888765432  2233344568999999965555544433   47777777654433


Q ss_pred             eEEe-c-CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec---CCccCceeeeeEecC-EEEEEecCCCeE
Q psy14258        210 PMVT-H-KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK---GFPVQNLYDITVFEN-NLFVTSWRNQSI  283 (440)
Q Consensus       210 ~l~~-~-~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~---~~~~~~p~gl~~~~~-~ly~td~~~~~i  283 (440)
                      .... . .-..+..+++++.+..|+.+. ..+.|...+++.........   ...-.....+++..+ ..+.+-..++.|
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccceeec-ccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            2222 1 233477899998887777765 45566666665544332221   111123455666543 333333334444


Q ss_pred             EEEe
Q psy14258        284 IRVN  287 (440)
Q Consensus       284 ~~~~  287 (440)
                      ...+
T Consensus       166 ~v~~  169 (371)
T d1k8kc_         166 RIFS  169 (371)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4333

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.69  E-value=3.8  Score=35.61  Aligned_cols=238  Identities=7%  Similarity=-0.017  Sum_probs=121.1

Q ss_pred             ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE
Q psy14258        174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT  253 (440)
Q Consensus       174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~  253 (440)
                      ..+|++.|...+|+-+...   +.|...+...................+++.+....++.+. ..+.+...+........
T Consensus       124 V~~l~~s~~~~~l~s~~~d---g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~  199 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAED---RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSL  199 (388)
T ss_dssp             EEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCcceecccc---cccccccccccccccccccccccccccccccccccccccc-cceeeeeeecccccccc
Confidence            5688898854444444433   4677776654433222222233456777776666666665 44567666665543333


Q ss_pred             EecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCC--------CCeEEEEeccCCCCCCCCCcee
Q psy14258        254 IRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFS--------RPFAIHIYHRQKQPDALKPSTF  323 (440)
Q Consensus       254 i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~--------~p~~~~v~~~~~qp~~~~~~~~  323 (440)
                      ....  ...+..+.+.  ++.++.+-...+.|...+..++.....+....        ....+.+.          |++.
T Consensus       200 ~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----------~~~~  267 (388)
T d1erja_         200 TLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT----------RDGQ  267 (388)
T ss_dssp             EEEC--SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC----------TTSS
T ss_pred             cccc--ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC----------CCCC
Confidence            2222  2233344443  22444444456777777766665544332111        11223222          2322


Q ss_pred             EEeecCCccEEEEEEcCCCCCCc---------eeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE
Q psy14258        324 LLYAKGKPAIIKGLTFKRDGTTE---------QAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI  394 (440)
Q Consensus       324 l~~~~~~~~~I~~i~~~~~~~~~---------~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~  394 (440)
                      ++++-+..+.|+..++.......         ........-.....+++.+.+..|+.+. ..+.|+..++........+
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcEEEEE
Confidence            33333334777777765441110         0111112223456899999877665544 6788988888754443334


Q ss_pred             ECCCCCeeeEEEecC-----CCcEEEEeCCCCeEEEEEe
Q psy14258        395 DTGIYNVEGMAVDWM-----ANNLYWTDAGIGTINVAKI  428 (440)
Q Consensus       395 ~~~~~~~~glAvD~~-----~~~lYwtd~~~~~I~~~~~  428 (440)
                      ...-+.+..+++-..     .+++..|-...++|.+-++
T Consensus       347 ~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            434456676765321     2345556555677777665

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.36  E-value=4.8  Score=34.44  Aligned_cols=211  Identities=7%  Similarity=-0.100  Sum_probs=104.3

Q ss_pred             eEEEEEeeec-ccEEEEEEcCCCCceeEEeCCCC-Ccceeeccccccceeeccccccce-eeeecCCcEEEe-----ceE
Q psy14258         82 EAIYFCTHYM-EHCMIAIDLNLSKPRGIALDPTS-GYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-----EAI  153 (440)
Q Consensus        82 ~~~~i~~d~~-~~~ly~~d~~~~~I~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-----~~I  153 (440)
                      .+.+++|.|. .+++..+-...+.|...++.... ...+.... ..  ........... ++.+.+..|..+     ..+
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~-~~--~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~  141 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV-KS--EFQVLAGPISDISWDFEGRRLCVVGEGRDNFG  141 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE-EE--EEECCSSCEEEEEECTTSSEEEEEECCSSCSE
T ss_pred             CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccc-cc--ccccccCcEEEEEECCCCCccceeeccccceE
Confidence            3889999874 34555555555666544432111 11110000 00  01111112233 444444444443     346


Q ss_pred             EEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec---CccCceEEEEeCCCCE
Q psy14258        154 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH---KIVYPYGVTVDFPTKH  230 (440)
Q Consensus       154 ~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~---~~~~P~gl~vD~~~~~  230 (440)
                      .+.+.+...+...+........++++.|...++..+-...  +.|...++.......-...   .......+++.+..+.
T Consensus       142 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~  219 (325)
T d1pgua1         142 VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD--GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE  219 (325)
T ss_dssp             EEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT--TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred             EEEeecccccceeeeecccccccccccccccceEEEeecc--cccccccccccccceecccccCCCCccEEeeeccccce
Confidence            6666664443333333345567899998766666554332  4666665532221111111   1234677889887777


Q ss_pred             EEEEeCCCCcEEEEEccCCCc-EEEecCC-cc-CceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258        231 VYWVDTYLDFIDRINYDGTDR-KTIRKGF-PV-QNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI  297 (440)
Q Consensus       231 ly~~d~~~~~i~~~~~dG~~~-~~i~~~~-~~-~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~  297 (440)
                      ++.+-...+.|...+..-... ..+.... .. .-.+.++...+..+.+-...+.|...+..+++....+
T Consensus       220 ~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         220 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            777666677888887643332 3322111 01 1123343334444555556777777777666655433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.24  E-value=5.4  Score=33.44  Aligned_cols=225  Identities=6%  Similarity=-0.100  Sum_probs=108.8

Q ss_pred             eEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-ee
Q psy14258         62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RF  140 (440)
Q Consensus        62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-av  140 (440)
                      |+..++........+..+...+.++++++.+..++..... +.|.............      ....+ .+...... ..
T Consensus        79 v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~  150 (340)
T d1tbga_          79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD-NICSIYNLKTREGNVR------VSREL-AGHTGYLSCCR  150 (340)
T ss_dssp             EEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETT-CCEEEEESSSSCSCCC------EEEEE-CCCSSCEEEEE
T ss_pred             eeeeecccceeEEEEecccccEEeeEeeccceeeeeeccc-ceeecccccccccccc------cceec-ccccccccccc
Confidence            7777776554433333333348999999987777666554 4454443332211110      00001 11111111 22


Q ss_pred             eecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCcc
Q psy14258        141 PMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV  217 (440)
Q Consensus       141 D~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~  217 (440)
                      ......+...   ..........................+...+ .+.++.+-...  +.|...++........+...-.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d--~~v~i~d~~~~~~~~~~~~h~~  227 (340)
T d1tbga_         151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACD--ASAKLWDVREGMCRQTFTGHES  227 (340)
T ss_dssp             EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETT--TEEEEEETTTTEEEEEECCCSS
T ss_pred             cccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeecC--ceEEEEECCCCcEEEEEeCCCC
Confidence            2222222222   2333333333333322222333344555555 34444444333  4677666654332222222234


Q ss_pred             CceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceE
Q psy14258        218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYE  295 (440)
Q Consensus       218 ~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~  295 (440)
                      ....+++++.+..|+.+. ..+.|...++.......... .........+++..+ .+.++-...+.|...+..+++...
T Consensus       228 ~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  306 (340)
T d1tbga_         228 DINAICFFPNGNAFATGS-DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CeEEEEECCCCCEEEEEe-CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEE
Confidence            567889987666665554 56678888776544433332 211223456666654 444554557788888877776655


Q ss_pred             EEe
Q psy14258        296 TIA  298 (440)
Q Consensus       296 ~~~  298 (440)
                      .+.
T Consensus       307 ~~~  309 (340)
T d1tbga_         307 VLA  309 (340)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            554

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.084  Score=30.75  Aligned_cols=30  Identities=30%  Similarity=0.529  Sum_probs=23.9

Q ss_pred             ecccCCCCCCCCC--CcccCCCceEEc-cCCeee
Q psy14258         13 DADECLIDGSCDQ--TCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus        13 d~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~l   43 (440)
                      |+|+|.. ..|.+  .|.+..++|+|. ++||..
T Consensus         2 d~d~C~~-~PC~ngg~C~~~~~~y~C~C~~g~~G   34 (39)
T d1edmb_           2 DGDQCES-NPCLNGGSCKDDINSYECWCPFGFEG   34 (39)
T ss_dssp             CCCTTTT-CCCCTTCEEEEETTEEEEECCTTCCS
T ss_pred             ccccCCC-CCCCCCcEEEcCCCCEEEECCCCCCC
Confidence            6778875 45666  788899999999 999874

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.11  E-value=0.077  Score=30.53  Aligned_cols=30  Identities=27%  Similarity=0.562  Sum_probs=22.1

Q ss_pred             ecccCCCCCCCCC--CcccCCCceEEc-cCCeee
Q psy14258         13 DADECLIDGSCDQ--TCTNTHLSYTYT-DEGFSF   43 (440)
Q Consensus        13 d~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~l   43 (440)
                      |+|+|.. ..|.+  .|.+..++|+|. ++||..
T Consensus         1 D~d~C~~-~PC~ngg~C~~~~~~y~C~C~~g~~G   33 (37)
T d2c4fl1           1 DGDQCAS-SPCQNGGSCKDQLQSYICFCLPAFEG   33 (37)
T ss_dssp             TCCGGGG-CCCCTTCEEEEETTEEEEECCTTEES
T ss_pred             CcccCCC-CCCCCCCEEECCCCCeEEECCCCCcC
Confidence            4566664 34554  677888999999 999874

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=0.2  Score=29.03  Aligned_cols=30  Identities=20%  Similarity=0.506  Sum_probs=23.1

Q ss_pred             cccCCCCCCCCC--CcccCCCceEEc-cCCeeee
Q psy14258         14 ADECLIDGSCDQ--TCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        14 ~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~l~   44 (440)
                      ||+|.. ..|.+  .|.+..++|+|. ++||...
T Consensus         1 Id~C~~-~PC~n~g~C~~~~~~y~C~C~~G~~G~   33 (39)
T d2vj3a2           1 VNECVS-NPCQNDATCLDQIGEFQCICMPGYEGV   33 (39)
T ss_dssp             CCTTTT-CCCCSSCEEEECSSCEEEECCTTEESS
T ss_pred             CcCCcC-CCCCCCCEEECCCCCEEEeCCCCCccC
Confidence            467765 34665  788899999999 9999753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.15  E-value=9.8  Score=32.94  Aligned_cols=196  Identities=10%  Similarity=-0.085  Sum_probs=102.4

Q ss_pred             eEEEecCCCcee--eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-
Q psy14258         62 FGPMDIEEWDEG--LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-  138 (440)
Q Consensus        62 I~~~~l~~~~~~--~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-  138 (440)
                      |+..++++....  ..+..+...+.+++|++.++.|.-.. ..+.|+..+++......        ...+...-..+.. 
T Consensus        31 i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-~D~~i~vWd~~~~~~~~--------~~~~~~~~~~v~~i  101 (371)
T d1k8kc_          31 VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKP--------TLVILRINRAARCV  101 (371)
T ss_dssp             EEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEE--------EEECCCCSSCEEEE
T ss_pred             EEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-CCCeEEEEeeccccccc--------cccccccccccccc
Confidence            666666654433  22222223389999999877665444 34566666654332111        1112222334566 


Q ss_pred             eeeecCCcEEEe---ceEEEEecCCceEE----EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce--
Q psy14258        139 RFPMVTHKIVYP---EAIYFCTHYMEHCM----IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF--  209 (440)
Q Consensus       139 avD~~~~~lY~~---~~I~~~~~dg~~~~----~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~--  209 (440)
                      ++.+.++.|+..   +.|.+.+++.....    ............++.+|. |.++.+-...  +.|...++......  
T Consensus       102 ~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~D--~~v~v~~~~~~~~~~~  178 (371)
T d1k8kc_         102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCD--FKCRIFSAYIKEVEER  178 (371)
T ss_dssp             EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-SSEEEEEETT--SCEEEEECCCTTTSCC
T ss_pred             ccccccccceeecccCcceeeeeeccccccccccccccccccccccccccc-ccceeccccC--cEEEEEeeccCccccc
Confidence            777777766665   56666665543321    111122345788999995 5444443222  46666555432111  


Q ss_pred             --------------eEEe--cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC
Q psy14258        210 --------------PMVT--HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN  271 (440)
Q Consensus       210 --------------~l~~--~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~  271 (440)
                                    .+..  .......++++++.+.+|+.+. ..+.|...++............ .....++++..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~-~~~v~s~~fs~d  254 (371)
T d1k8kc_         179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASE-TLPLLAVTFITE  254 (371)
T ss_dssp             CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEET
T ss_pred             cccccccccccceeeeeeccCccCcEEEEEeecccccccccc-cCCcceEEeeecccceeeeecc-cccceeeeecCC
Confidence                          1111  1233467889998888887765 4577888887544332222221 112356666544

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.20  E-value=8.4  Score=31.30  Aligned_cols=139  Identities=13%  Similarity=0.086  Sum_probs=82.9

Q ss_pred             cEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCe---EEEEEcC--CCCCcEEEEeCC--CCCceeEEecC
Q psy14258        146 KIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGY---MFFTKWG--ATRPMLERSLLD--GTERFPMVTHK  215 (440)
Q Consensus       146 ~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~---lywtd~~--~~~~~I~r~~~d--G~~~~~l~~~~  215 (440)
                      .||++   +.+...-++|.....+.    ..|-+...+|..+.   +|.-|..  ..++.|..+++.  |...+ +-+-.
T Consensus        28 ll~~~~seG~vni~~l~g~~~vkLt----kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~-i~spk  102 (313)
T d2hu7a1          28 LLVVGFSEGSVNAYLYDGGETVKLN----REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR-LEAVK  102 (313)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEECC----SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE-CTTSC
T ss_pred             EEEEEeccceEEEEEEeCCEEEEEe----cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE-ecCCc
Confidence            35555   77877778887665543    46778888887653   4444532  235789999998  65443 11111


Q ss_pred             ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCc--------cCceeeeeEecC---EEEEEecCCCeEE
Q psy14258        216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFP--------VQNLYDITVFEN---NLFVTSWRNQSII  284 (440)
Q Consensus       216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~--------~~~p~gl~~~~~---~ly~td~~~~~i~  284 (440)
                      --+...++-|  +.++-++-+..+.....-++|...+.+..-..        -.+..|+.++.+   .+|.+|..++.+.
T Consensus       103 ~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         103 PMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             SBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             eEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence            1123345554  66666666666666666678877766654111        124556666644   6778887777776


Q ss_pred             EEeccCC
Q psy14258        285 RVNKFNS  291 (440)
Q Consensus       285 ~~~~~~g  291 (440)
                      .++...|
T Consensus       181 i~tpkeG  187 (313)
T d2hu7a1         181 VFDSGEG  187 (313)
T ss_dssp             EECCSSE
T ss_pred             EecCCCC
Confidence            6655433

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.17  E-value=0.39  Score=27.89  Aligned_cols=19  Identities=5%  Similarity=0.235  Sum_probs=16.9

Q ss_pred             CcccCCCceEEc-cCCeeee
Q psy14258         26 TCTNTHLSYTYT-DEGFSFQ   44 (440)
Q Consensus        26 ~C~n~~~~~~C~-~~g~~l~   44 (440)
                      .|.|++++|.|. .+||...
T Consensus        14 ~C~Nt~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2          14 ECRDYATGFCCRCVANYTGN   33 (40)
T ss_dssp             EEEECSSCEEEEECTTEEEC
T ss_pred             EeecCCCCeEeECCCCCcCC
Confidence            588999999999 9999854