Psyllid ID: psy14262

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
Protein Sequence
MIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS
Secondary Structure (PSIPRED)
cccccccccEEccccccccccccccccccccccccccccccccccccccEEccccccccccEEEccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEccccccccccccccccccccccccccEEEcccccEEccccccccccccccccccccccccccccccEEcccccEEcccccccccccccccccccccccccccccccEEcccccccccccEEEcccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEEEcccccEEccccccccccccccccccEEEEEccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEcccccEcccEEEEcccccccccccccccccccEEEEEEEccccccEEEEEEccccccccccccEEEEEccccccEEEEEccccccccEEEEEccccccccccccccEEEccccccccccEEEEccccEEEEEcccccccccccccccccccEccccccEcccccEEEcccEEccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccEcccccEEccccEEcccccccccccccccccccccccccccccccEcccccEEccccEEEcccccccccccccccccccccccccccccccccccEcccccEEccccEEccccccccccccccccccccccccccccccccEccccccEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEccccEEEEccccc
Coil and Loop (DISEMBL)
mihqcfngqvqcalskkciphnwlcdeemdcstddivdntdeDWDKYFKRILNGTHTLALEFnhrnqslcfiqqqnvssVRLRCAQINDLlnswdlpapeifplderlekagmhgenrsplvtkniqwpsslvidynQDILYWCDSHLNTVESVrvdgshnavlchpnelrcgssnqcvalskfcdgkpdcsngedegpfcnaectpgqfscgmgkcipeswkcdgfvdcledgsdepntcihqcfngqvqcalskkciphnwlcdeemdcstddivdntdedwdkfhqcfngqvqcalskkciphnwlcdeemdcstddivdntdedwdkyfshnavlchpnelrcgssnqcvalskfcdgkpdcsngedegpfcnnkadcenlkcshkcsptprgamcfcpagqnpnktqcvdadeclidgscdqtctnthlsyvcsctegytlrpdgksctavnvpqdepasiifssTVDIRRIHLNGS
Flexible Loop (DISEMBL)
MIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLlnswdlpapEIFPLDERLEKAGMhgenrsplvtkniqwpSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAvnvpqdepasiifsstvdiRRIHLNGS
Low Complexity Region (SEG)
MIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS
Disordered region (IsUnstruct)
***QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDERL***********PLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDC*****EGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGK***********FCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRI*****
Disordered Region (DISOPRED)
MIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHL***
Disordered Region (DISEMBL)
MIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS
Disordered Region (DISPRO)
*IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	482	2.2.26 [Sep-21-2011]
A2ARV4	4660	Low-density lipoprotein r	yes	N/A	0.616	0.063	0.370	8e-35
P98164	4655	Low-density lipoprotein r	yes	N/A	0.614	0.063	0.363	2e-34
Q04833	4753	Low-density lipoprotein r	yes	N/A	0.595	0.060	0.361	4e-34
Q91ZX7	4545	Prolow-density lipoprotei	no	N/A	0.595	0.063	0.345	9e-34
P98165	863	Very low-density lipoprot	no	N/A	0.632	0.353	0.340	2e-33
P98158	4660	Low-density lipoprotein r	no	N/A	0.609	0.063	0.352	3e-33
Q07954	4544	Prolow-density lipoprotei	no	N/A	0.595	0.063	0.339	5e-33
P98163	1984	Putative vitellogenin rec	no	N/A	0.632	0.153	0.307	1e-32
P98157	4543	Low-density lipoprotein r	no	N/A	0.593	0.062	0.338	5e-32
P35953	873	Very low-density lipoprot	no	N/A	0.605	0.334	0.326	7e-32

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score =  148 bits (374), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 162/329 (49%), Gaps = 32/329 (9%)

Query: 162 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPES 221
              C   +L C S+ QCV +   CD   DC +G DE       C   Q +C  G C   S
Sbjct: 105 GTTCSSQQLTC-SNGQCVPIEYRCDHVSDCPDGSDERNCYYPTCD--QLTCANGACYNTS 161

Query: 222 WKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTD 281
            KCD  VDC  D SDE N C   C   + QC  S +CI   ++CD + DC      DN+D
Sbjct: 162 QKCDHKVDC-RDSSDEAN-CTTLCSQKEFQCG-SGECILRAYVCDHDNDCE-----DNSD 213

Query: 282 EDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW-DKYFSHNAVLC 340
           E    +  C   Q  C+ + +CI  NW+CD + DC      D+ DED  +    H+   C
Sbjct: 214 EHNCNYDTCGGHQFTCS-NGQCINQNWVCDGDDDCQ-----DSGDEDGCESNQRHHT--C 265

Query: 341 HPNELRCGSSNQCVALSKFCDGKPDCSNGEDE-----GPFCNNKADCENLKCSHKCSPTP 395
           +P E  C  S +C+++ K CDG PDC  GEDE     G +C     C  L C ++C  TP
Sbjct: 266 YPREWACPGSGRCISMDKVCDGVPDCPEGEDENNATSGRYCGTGL-CSILNCEYQCHQTP 324

Query: 396 RGAMCFCPAGQ--NPNKTQ-CVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKS 452
            G  CFCP G   N N ++ C+D D+C I G CDQ C +    + C C EGY L   G+ 
Sbjct: 325 YGGECFCPPGHIINSNDSRTCIDFDDCQIWGICDQKCESRQGRHQCLCEEGYILE-RGQH 383

Query: 453 CTAVNVPQDEPASIIFSSTVDIRRIHLNG 481
           C + +      ASIIFS+  D+    L+G
Sbjct: 384 CKSND--SFSAASIIFSNGRDLLVGDLHG 410

Acts together with cubilin to mediate HDL endocytosis.
Mus musculus (taxid: 10090)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 158/325 (48%), Gaps = 29/325 (8%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C  +++ C S+ QC+     CD   DC +G DE       C   Q +C  G C   S KC
Sbjct: 108 CSSHQITC-SNGQCIPSEYRCDHVRDCPDGADENDCQYPTCE--QLTCDNGACYNTSQKC 164

Query: 225 DGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW 284
           D  VDC  D SDE N C   C + +  C  + +CIP  ++CD + DC      D +DE  
Sbjct: 165 DWKVDC-RDSSDEIN-CTEICLHNEFSCG-NGECIPRAYVCDHDNDCQ-----DGSDEHA 216

Query: 285 DKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNE 344
             +  C   Q  C  S +CI  NW+CD E DC      DN DED  +   H+   C P E
Sbjct: 217 CNYPTCGGYQFTCP-SGRCIYQNWVCDGEDDCK-----DNGDEDGCESGPHDVHKCSPRE 270

Query: 345 LRCGSSNQCVALSKFCDGKPDCSNGEDE-----GPFCNNKADCENLKCSHKCSPTPRGAM 399
             C  S +C+++ K CDG  DC   EDE     G +C+    C  L C ++C  TP G  
Sbjct: 271 WSCPESGRCISIYKVCDGILDCPGREDENNTSTGKYCSMTL-CSALNCQYQCHETPYGGA 329

Query: 400 CFCPAGQNPN---KTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV 456
           CFCP G   N      CV+ D+C I G CDQ C +    ++C C EGY L   G+ C A 
Sbjct: 330 CFCPPGYIINHNDSRTCVEFDDCQIWGICDQKCESRPGRHLCHCEEGYILE-RGQYCKAN 388

Query: 457 NVPQDEPASIIFSSTVDIRRIHLNG 481
           +   +  ASIIFS+  D+    ++G
Sbjct: 389 DSFGE--ASIIFSNGRDLLIGDIHG 411

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 151/307 (49%), Gaps = 20/307 (6%)

Query: 165  CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NAECTPGQFSCGMGK-CIPES 221
            C  N+  C ++ +C+ +   CDG  DC +G DE        +C+  QF C  G+ C+P  
Sbjct: 1187 CAANQFSC-ANGRCIPIYWLCDGDNDCYDGTDEDKERCPPVQCSALQFRCANGRQCVPLR 1245

Query: 222  WKCDGFVDCLEDGSDEPNTCI--HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDN 279
              CDG  DC EDGSDE +  +    C   Q +C  S  CIP +W CD + DC  DD  D 
Sbjct: 1246 NHCDGQSDC-EDGSDEDSCAVTAESCTPDQFKCVSSGLCIPASWKCDGQQDC--DDGSDE 1302

Query: 280  TDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK--YFSHNA 337
                     QC + Q +C  + +CI +NWLCD E DC      D +DE  ++    S NA
Sbjct: 1303 PKFGCTSGRQCSSDQFKCG-NGRCILNNWLCDGENDCG-----DGSDESSERGCKTSMNA 1356

Query: 338  VLCHPNELRCGSSNQ-CVALSKFCDGKPDCSNGEDEGPFCNNKA-DCENLKCSHKCSPTP 395
              C    + C +  + C+ L + CDGK  C  G DEG  C       +   CS KC  +P
Sbjct: 1357 RKCPFEHVACENDQETCIPLHQLCDGKTHCPGGTDEGGRCARDLCSADRAGCSFKCHNSP 1416

Query: 396  RGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
             G +C CP G Q  NKT+C   +ECL   SC Q C +    + CSC EGY L  D ++C 
Sbjct: 1417 NGPICSCPFGEQLVNKTKCEPENECLDSSSCSQRCKDEKHGFTCSCDEGYELDVDKRTCK 1476

Query: 455  AVNVPQD 461
              +  +D
Sbjct: 1477 VADNVKD 1483

May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin.

Caenorhabditis elegans (taxid: 6239)

>sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 156/321 (48%), Gaps = 34/321 (10%)

Query: 174  SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLED 233
            ++ +C+ ++  CD   DC +  DE   C+  C+  QF C  G+CIPE W CDG  DC + 
Sbjct: 986  NNGRCININWRCDNDNDCGDNSDEAG-CSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDY 1044

Query: 234  GSDEPNTCIHQ-------CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW-- 284
              +    C +Q       C + + QC L   CIP  W CD + DC     +D++DE    
Sbjct: 1045 SDETHANCTNQATRPPGGCHSDEFQCRLDGLCIPLRWRCDGDTDC-----MDSSDEKSCE 1099

Query: 285  DKFHQC-FNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPN 343
               H C  N +  C  S +CI   W+CD + DC      DN+DE+     +  A+ C P 
Sbjct: 1100 GVTHVCDPNVKFGCKDSARCISKAWVCDGDSDCE-----DNSDEE-----NCEALACRPP 1149

Query: 344  ELRCGS-SNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTP-RGAMCF 401
               C + ++ C+   K CDGK DC +G DEG  C+ +    N  CSH CS  P  G +C 
Sbjct: 1150 SHPCANNTSVCLPPDKLCDGKDDCGDGSDEGELCD-QCSLNNGGCSHNCSVAPGEGIVCS 1208

Query: 402  CPAGQ--NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVP 459
            CP G     +   C     C     C Q C     S  CSC EG+ L PDG+SC +++  
Sbjct: 1209 CPLGMELGSDNHTCQIQSYCAKHLKCSQKCDQNKFSVKCSCYEGWVLEPDGESCRSLDPF 1268

Query: 460  QDEPASIIFSSTVDIRRIHLN 480
            +     IIFS+  +IRRI L+
Sbjct: 1269 K---PFIIFSNRHEIRRIDLH 1286

Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A.

Mus musculus (taxid: 10090)

>sp|P98165|VLDLR_CHICK Very low-density lipoprotein receptor OS=Gallus gallus GN=VLDLR PE=1 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 174/376 (46%), Gaps = 71/376 (18%)

Query: 157 DGS-HNAVLCH-----PNELRCG-SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQ 209
           DGS  +A LCH      NE+ CG  S QC+ +S  CDG+ DC +GEDE    N  C+  +
Sbjct: 117 DGSDESAELCHMRTCRVNEISCGPQSTQCIPVSWKCDGEKDCDSGEDEENCGNVTCSAAE 176

Query: 210 FSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEM 269
           F+C  G+CI +S+ C+G  DC  DGSDE       C   + QC  S  CIP +W+CD++ 
Sbjct: 177 FTCSSGQCISKSFVCNGQDDC-SDGSDELECAPPTCGVHEFQCK-SSTCIPISWVCDDDA 234

Query: 270 DCS--TDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 327
           DCS  +D+ ++          +C   +VQC  S +CI   W CD + DC      D +DE
Sbjct: 235 DCSDHSDESLEQCGRQPAPPVKCSTSEVQCG-SGECIHKKWRCDGDPDCK-----DGSDE 288

Query: 328 DWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE----------GP--- 374
                 +  +  C P++ RC   N C+  S+ C+G  DC +G DE          GP   
Sbjct: 289 -----INCPSRTCRPDQFRCEDGN-CIHGSRQCNGVRDCLDGTDEANCNNVIQCSGPGKF 342

Query: 375 ------------FCNNKADCE------------------NLKCSHKCSPTPRGAMCFCPA 404
                        CN+  DC+                  N  CSH C     G  C CPA
Sbjct: 343 KCRSGECIDINKVCNHHGDCKDWSDEPLKECNINECLVNNGGCSHICRDLVIGYECDCPA 402

Query: 405 G-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEP 463
           G +  ++  C D DEC   G C Q C N    Y C C+ GY +      C AV     EP
Sbjct: 403 GFELVDRRTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVG---KEP 459

Query: 464 ASIIFSSTVDIRRIHL 479
             +IF++  DIR+I L
Sbjct: 460 C-LIFTNRRDIRKIGL 474

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Gallus gallus (taxid: 9031)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score =  143 bits (361), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 163/332 (49%), Gaps = 38/332 (11%)

Query: 162 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEG----PFCNAECTPGQFSCGMGKC 217
              C   ++ C S+ QC+     CD   DC +G DE     P C+      Q +C  G C
Sbjct: 105 GTTCSAQQMTC-SNGQCIPSEYRCDHVSDCPDGSDERNCHYPTCD------QLTCANGAC 157

Query: 218 IPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIV 277
              S +CD  VDC  D SDE N C   C   + +C  S +CI   ++CD + DC      
Sbjct: 158 YNTSQRCDQKVDC-RDSSDEAN-CTTLCSQKEFECG-SGECILRAYVCDHDNDCE----- 209

Query: 278 DNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW-DKYFSHN 336
           DN+DE    +  C   Q  C+ + +CI  NW+CD + DC      D+ DED  +   SH+
Sbjct: 210 DNSDERNCNYDTCGGHQFTCS-NGQCINQNWVCDGDDDCQ-----DSGDEDGCESNQSHH 263

Query: 337 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNK----ADCENLKCSHKCS 392
              C+P E  C  S +C+++ K CDG PDC  G+DE    + +      C  L C ++C 
Sbjct: 264 R--CYPREWACPGSGRCISIDKVCDGVPDCPEGDDENNVTSGRTCGMGVCSVLNCEYQCH 321

Query: 393 PTPRGAMCFCPAGQ--NPNKTQ-CVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPD 449
            TP G  CFCP G   N N ++ C+D D+C I G CDQ C N    + C C EGY L   
Sbjct: 322 QTPFGGECFCPPGHIINSNDSRTCIDFDDCQIWGICDQKCENRQGRHQCLCEEGYILE-R 380

Query: 450 GKSCTAVNVPQDEPASIIFSSTVDIRRIHLNG 481
           G+ C + +      AS+IFS+  D+    L+G
Sbjct: 381 GQHCKSSD--SFSAASVIFSNGRDLLVGDLHG 410

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score =  142 bits (359), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 155/321 (48%), Gaps = 34/321 (10%)

Query: 174  SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLED 233
            ++ +C+ ++  CD   DC +  DE   C+  C+  QF C  G+CIPE W CDG  DC + 
Sbjct: 985  NNGRCININWRCDNDNDCGDNSDEAG-CSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDY 1043

Query: 234  GSDEPNTCIHQ-------CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW-- 284
              +    C +Q       C   + QC L   CIP  W CD + DC     +D++DE    
Sbjct: 1044 SDETHANCTNQATRPPGGCHTDEFQCRLDGLCIPLRWRCDGDTDC-----MDSSDEKSCE 1098

Query: 285  DKFHQC-FNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPN 343
               H C  + +  C  S +CI   W+CD + DC      DN+DE+     +  ++ C P 
Sbjct: 1099 GVTHVCDPSVKFGCKDSARCISKAWVCDGDNDCE-----DNSDEE-----NCESLACRPP 1148

Query: 344  ELRCGS-SNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTP-RGAMCF 401
               C + ++ C+   K CDG  DC +G DEG  C+ +    N  CSH CS  P  G +C 
Sbjct: 1149 SHPCANNTSVCLPPDKLCDGNDDCGDGSDEGELCD-QCSLNNGGCSHNCSVAPGEGIVCS 1207

Query: 402  CPAGQ--NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVP 459
            CP G    P+   C     C     C Q C     S  CSC EG+ L PDG+SC +++  
Sbjct: 1208 CPLGMELGPDNHTCQIQSYCAKHLKCSQKCDQNKFSVKCSCYEGWVLEPDGESCRSLDPF 1267

Query: 460  QDEPASIIFSSTVDIRRIHLN 480
            +     IIFS+  +IRRI L+
Sbjct: 1268 K---PFIIFSNRHEIRRIDLH 1285

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

>sp|P98163|YL_DROME Putative vitellogenin receptor OS=Drosophila melanogaster GN=yl PE=1 SV=2

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 169/367 (46%), Gaps = 62/367 (16%)

Query: 165  CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNA--ECTPGQFSCGMGKCIPESW 222
            CH ++  C  + +CV  S  CDG  DC +  DE   C A   C PG F CG G CI  SW
Sbjct: 1118 CHVHQHGC-DNGKCVDSSLVCDGTNDCGDNSDE-LLCEATSRCEPGMFQCGSGSCIAGSW 1175

Query: 223  KCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCD---------EEMDCST 273
            +CDG +DC  DGSDE + C+H+     +Q  L  +C+  + +CD         +E++C T
Sbjct: 1176 ECDGRIDC-SDGSDEHDKCVHRSCPPDMQRCLLGQCLDRSLVCDGHNDCGDKSDELNCGT 1234

Query: 274  DDIVDNTDEDWDKFH-------------------QCFNGQ-------------VQCALSK 301
            D    N     D++                    +C  G+              +C   +
Sbjct: 1235 DSSTMNISCAEDQYQCTSNLKICLPSTVRCNGTTECPRGEDEADCGDVCSIYEFKCRSGR 1294

Query: 302  KCIPHNWLCDEEMDCS--TDDIV-----DNTDEDWDKYFSHNAVLCHPNELRCGSSNQCV 354
            +CI   + CD + DC   +D++       + ++   + +S ++  C P+   C    +CV
Sbjct: 1295 ECIRREFRCDGQKDCGDGSDELSCELEKGHHNQSQIQPWSTSSRSCRPHLFDC-QDGECV 1353

Query: 355  ALSKFCDGKPDCSNGEDEGPFCNN--KADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQ 412
             LS+ C+  PDC+NG DEGP C    ++      C HKC  TP GA+C C  G   +  Q
Sbjct: 1354 DLSRVCNNFPDCTNGHDEGPKCATACRSASGRQVCQHKCRATPAGAVCSCFDGYRLDADQ 1413

Query: 413  --CVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSS 470
              C+D DEC     C Q C NT   Y C C   + LR D  SC ++       A+++FSS
Sbjct: 1414 KSCLDIDECQEQQPCAQLCENTLGGYQCQCHADFMLRQDRVSCKSLQ----SGATLLFSS 1469

Query: 471  TVDIRRI 477
              ++R +
Sbjct: 1470 FNEVRNL 1476

Involved in uptake of vitellogenin by endocytosis.

Drosophila melanogaster (taxid: 7227)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 155/322 (48%), Gaps = 36/322 (11%)

Query: 174  SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLED 233
            ++ +C+ ++  CD   DC +  DE   C+  C+  QF C  G+CIP  W CDG  DC + 
Sbjct: 983  NNGRCININWRCDNDNDCGDNSDEAG-CSHSCSSNQFKCNSGRCIPVHWTCDGDNDCGDY 1041

Query: 234  GSDEPNTCIHQ-------CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED--W 284
              +    C +Q       C   + QC L   CIP  W CD + DC     +D++DE    
Sbjct: 1042 SDETHANCTNQATRPPGGCHTDEFQCRLDGLCIPMRWRCDGDTDC-----MDSSDEKNCE 1096

Query: 285  DKFHQC-FNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPN 343
               H C  N +  C  S +CI   W+CD + DC      DN+DE+     +  +++C P 
Sbjct: 1097 GVTHVCDPNVKFGCKDSARCISKAWVCDGDSDCE-----DNSDEE-----NCESLVCKPP 1146

Query: 344  ELRCGSSNQ-CVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTP-RGAMCF 401
               C ++   C+   K CDG  DC +G DEG  C+ +    N  CSH C+  P  G +C 
Sbjct: 1147 SHTCANNTSICLPPEKLCDGSDDCGDGSDEGELCD-QCSLNNGGCSHNCTVAPGEGIVCS 1205

Query: 402  CPAGQN---PNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV 458
            CP G      NKT C     C     C Q C     +  CSC EG+ L PDG+SC +++ 
Sbjct: 1206 CPLGMELGADNKT-CQIQSYCAKHLKCSQKCEQDKYNVKCSCYEGWMLEPDGESCRSLDP 1264

Query: 459  PQDEPASIIFSSTVDIRRIHLN 480
             +     IIFS+  +IRRI L+
Sbjct: 1265 FK---PFIIFSNRHEIRRIDLH 1283

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

>sp|P35953|VLDLR_RABIT Very low-density lipoprotein receptor OS=Oryctolagus cuniculus GN=VLDLR PE=2 SV=1

 Score =  138 bits (348), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 168/367 (45%), Gaps = 75/367 (20%)

Query: 165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWK 223
           C  NE+ CG+ S QC+ +S  CDG+ DC +GEDE    N  C+  +F+C  G+CI  ++ 
Sbjct: 113 CRINEISCGARSTQCIPVSWRCDGESDCDSGEDEENCGNVTCSSDEFTCSSGRCISRNFV 172

Query: 224 CDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
           C+G  DC  DGSDE +     C   + QC+ S  CIP +W+CD++ DCS     D +DE 
Sbjct: 173 CNGQDDC-SDGSDELDCAPPTCGAHEFQCSTSS-CIPISWVCDDDADCS-----DQSDES 225

Query: 284 WDK-------FHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHN 336
            ++         +C   ++QC  S +CI   W CD + DC      D +DE      +  
Sbjct: 226 LEQCGRQPVIHTKCPASEIQCG-SGECIHKKWRCDGDPDCK-----DGSDE-----VNCP 274

Query: 337 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE----------GP------------ 374
           +  C P++  C     C+  S+ C+G  DC +G DE          GP            
Sbjct: 275 SRTCRPDQFEC-EDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECID 333

Query: 375 ---FCNNKADCE------------------NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQ 412
               CN + DC                   N  CSH C  +  G  C C AG +  ++  
Sbjct: 334 ISKVCNQEQDCRDWSDEPLKECHVNECLVNNGGCSHICKDSVIGYECDCAAGFELIDRKT 393

Query: 413 CVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTV 472
           C D DEC   G C Q C N    Y C C+ GY +      C AV     EP S+IF++  
Sbjct: 394 CGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVG---KEP-SLIFTNRR 449

Query: 473 DIRRIHL 479
           DIR+I L
Sbjct: 450 DIRKIGL 456

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
328702065	2150	PREDICTED: low-density lipoprotein recep	0.483	0.108	0.407	3e-47
270010181	4576	hypothetical protein TcasGA2_TC009548 [T	0.475	0.050	0.425	6e-43
427796811	4696	Putative prolow-density lipoprotein rece	0.477	0.048	0.418	3e-41
432117303	1645	Low-density lipoprotein receptor-related	0.605	0.177	0.377	3e-40
157115039	4649	low-density lipoprotein receptor (ldl) [	0.475	0.049	0.381	3e-39
156407458	629	predicted protein [Nematostella vectensi	0.614	0.470	0.360	2e-38
158300186	4718	AGAP012372-PA [Anopheles gambiae str. PE	0.468	0.047	0.402	3e-38
297471646	4680	PREDICTED: low-density lipoprotein recep	0.624	0.064	0.345	3e-38
170035892	4695	very low-density lipoprotein receptor [C	0.452	0.046	0.426	5e-38
427788305	4586	Putative megalin [Rhipicephalus pulchell	0.614	0.064	0.390	6e-38

>gi|328702065|ref|XP_001946912.2| PREDICTED: low-density lipoprotein receptor-related protein 1-like [Acyrthosiphon pisum]

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 144/282 (51%), Gaps = 49/282 (17%)

Query: 203 AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC-IHQCFNGQVQCALSKKCIPH 261
           + C   QF CG G+CIP  WKCD   DC  DGSDE ++C +  C   Q QCALSKKCIP 
Sbjct: 33  SSCNSNQFFCGSGECIPLKWKCDFNPDC-ADGSDEFDSCGLPTCKYSQFQCALSKKCIPR 91

Query: 262 NWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDI 321
            W+CD E+DC                                     L   E D S +D 
Sbjct: 92  EWICDGELDCGAS----------------------------------LNSTEQDASDEDS 117

Query: 322 VDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKAD 381
           +                 C PN  RCG+S QC  +  FCDG   C N  DEG FC N   
Sbjct: 118 LQ----------CQKPSSCPPNMARCGNSTQCKYIESFCDGTSHCENSTDEGRFCENMVP 167

Query: 382 CENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADEC-LIDGSCDQTCTNTHLSYVCSC 440
           C  L C+H C PT +G  CFCP G  P+  +C+D DEC +++ +CDQ CTN   S+ CSC
Sbjct: 168 CHGLNCAHGCKPTGKGPACFCPEGMQPHNNECIDMDECEVLNYTCDQICTNKKGSFSCSC 227

Query: 441 TEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
             GY       +C A+NVP++E ASI+ S++ DIRRI+LNGS
Sbjct: 228 VPGYI--QTNSTCKAINVPENEDASILVSTSKDIRRIYLNGS 267

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010181|gb|EFA06629.1| hypothetical protein TcasGA2_TC009548 [Tribolium castaneum]

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 136/240 (56%), Gaps = 11/240 (4%)

Query: 245 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD--KFHQCFNGQVQCALSKK 302
           C + Q QC L   CIP +W CD + DC+     D +DE ++  +   C   Q QCAL++K
Sbjct: 32  CDSDQFQC-LDGPCIPSHWRCDGQPDCA-----DGSDEPFECIQTQTCRPEQFQCALTRK 85

Query: 303 CIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDG 362
           C+P  W+CDE+ DC T   +     D D    H  + C  N+ +CG   +C  + KFCD 
Sbjct: 86  CLPLGWVCDEDQDCGTSTTLGVDTSDEDPSQCHKEIKCPWNQAKCGFGPECAPIKKFCDK 145

Query: 363 KPDCSNGEDEGPFCNNKA-DCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLI 421
           + DC NG DE  FC N    C+ L CS+ C PT  G  CFCP GQ P  ++CVDADEC +
Sbjct: 146 QRDCVNGGDEWDFCRNSTFSCDKLVCSYGCRPTGEGPKCFCPEGQRPEGSRCVDADECEL 205

Query: 422 DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNG 481
           D +C Q C NT  S+ CSC  GY    +G  C A+NVP    ASI+FS+  +I R+ L+G
Sbjct: 206 DNTCAQVCKNTVGSFECSCVSGY--EKNGTDCVALNVPPALDASIVFSTQAEIARLKLSG 263

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796811|gb|JAA63857.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus]

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/246 (41%), Positives = 144/246 (58%), Gaps = 16/246 (6%)

Query: 244 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKF-HQCFNGQVQCALSKK 302
           +C + Q  CA  + CIP  W CD   DC+     D +DE  D     C +GQ QCALS++
Sbjct: 48  KCPDNQFACADGQGCIPKQWKCDFSPDCA-----DGSDEPEDCVPSTCASGQFQCALSRR 102

Query: 303 CIPHNWLCDEEMDCS-TDDIV-DNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFC 360
           CIP  ++CD E DC  T+D+V D +DED  +    N+  C  N  RC     C  ++  C
Sbjct: 103 CIPKGFVCDRESDCGFTEDLVPDTSDEDARRCHLGNS--CPQNYFRCHDGITCRRIAVLC 160

Query: 361 DGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNK---TQCVDAD 417
           DG  DC +  DEGPFC+  A C N  C H C P P+G +CFC  G  P++   + CVDAD
Sbjct: 161 DGHHDCPDFSDEGPFCSETAQCANASCDHGCKPGPQGPVCFCKKGMEPHREMPSLCVDAD 220

Query: 418 ECLIDGSCDQTCTNT-HLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRR 476
            C + G+CDQ CT+    S+ CSC EGY  +  G  C  +NVP+DE A+++F+++++I+ 
Sbjct: 221 PCSVPGTCDQNCTSGPKGSHNCSCVEGY--KAVGSQCFGINVPEDEEATLLFANSINIQH 278

Query: 477 IHLNGS 482
           I L+GS
Sbjct: 279 IRLDGS 284

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432117303|gb|ELK37690.1| Low-density lipoprotein receptor-related protein 2 [Myotis davidii]

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/323 (37%), Positives = 166/323 (51%), Gaps = 31/323 (9%)

Query: 156 VDGSHNAVLCHPNE---LRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSC 212
           VDGS       P E   +RC +  +CV  S  CDG  DCS+ EDE    + +C+  +F C
Sbjct: 661 VDGSDELDCWKPTEDCSVRCDNKTRCVPKSWLCDGNADCSDKEDEQGCIHEKCSISEFRC 720

Query: 213 GMGKCIPESWKCDGFVDCLEDGSDE--PNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMD 270
             G+CI  S  CDG  DCL+   +E  P     QC +G+V+C  S +C+   W+CD ++D
Sbjct: 721 KNGQCISYSLHCDGNRDCLDRSDEEGCPVAWPQQCPSGEVKCPRSGECVLTEWICDHDLD 780

Query: 271 CSTDDIVDNTDED--WDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 328
           C      D +DE     +  +C + Q  CA + +C+P +W CD + DC      D +DE 
Sbjct: 781 CK-----DGSDEKNCHPEELRCGSRQWSCASADQCMPDSWRCDGQRDCR-----DGSDE- 829

Query: 329 WDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCS 388
                +     C  +E +C SS  C+ LS  CDGK DC++G DEG  C+  A C   +CS
Sbjct: 830 ----AACAPEKCGSSEFQCRSS-ACLHLSLVCDGKEDCADGSDEGGQCSASA-CGQAQCS 883

Query: 389 HKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGS--CDQTCTNTHLSYVCSCTEGY 444
           H C P+PRG +C C  G     +   C D DEC   G   C QTC NT  SY C+C  GY
Sbjct: 884 HTCYPSPRGPICACEQGFELKSSGGSCEDVDECQRSGGRPCSQTCINTEGSYHCTCHPGY 943

Query: 445 TLRPDGKSCTAVNVPQDEPASII 467
            L PDG +C A      EP  ++
Sbjct: 944 LLEPDGHTCKATGT---EPILLV 963

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157115039|ref|XP_001652530.1| low-density lipoprotein receptor (ldl) [Aedes aegypti] gi|108877064|gb|EAT41289.1| AAEL007041-PA [Aedes aegypti]

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 145/286 (50%), Gaps = 57/286 (19%)

Query: 202 NAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIHQCFNGQVQCALSKKCIP 260
           +  C    F+CG GKCIP+ WKCD + DC  DGSDE +    HQC   Q QC L+ KCIP
Sbjct: 23  DVTCPRSHFTCGDGKCIPQHWKCDTYADC-ADGSDEIDCDKAHQCKEEQFQCKLTNKCIP 81

Query: 261 HNWLCDEEMDCSTDD---IVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCS 317
            +W CD + DC   +    +D +DED D           C  SK C+P   +C       
Sbjct: 82  RSWTCDGDADCGVVEKFQTIDVSDEDAD----------LCRSSKHCLPTQTVC------- 124

Query: 318 TDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN 377
                                          S+ +C+ + KFCDG  DC+N E   P  N
Sbjct: 125 -------------------------------SNGKCLDIEKFCDGVWDCTNDELRCPK-N 152

Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYV 437
           N ++C  L+CS  C  TP G  CFC  G  PN + C D DEC I+G CDQTC N   SY 
Sbjct: 153 NASECAKLQCSFDCRQTPNGPKCFCAKGSQPNGSLCEDFDECQIEGICDQTCKNLPGSYK 212

Query: 438 CSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIH-LNGS 482
           C+C  GY  R D K C A+N P++EP S++F+++ D+++   +NGS
Sbjct: 213 CTCASGYA-RIDNK-CLAINTPKEEPMSLLFATSADVQKFPVINGS 256

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156407458|ref|XP_001641561.1| predicted protein [Nematostella vectensis] gi|156228700|gb|EDO49498.1| predicted protein [Nematostella vectensis]

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 158/322 (49%), Gaps = 26/322 (8%)

Query: 162 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPES 221
           A  C  +  RC ++ QC      CDG  DC +G DE    N  CTP QFSC  G+CIP  
Sbjct: 83  ATNCSASMFRC-ANGQCKPRDWVCDGFDDCGDGSDEKGCANHSCTPAQFSCPSGRCIPLR 141

Query: 222 WKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTD 281
           W+CDG  DC  DG+DE       C + Q  C+ + +CI   W CD + DC+     D +D
Sbjct: 142 WRCDGDGDC-SDGADERGCPPKNCTDSQFSCS-NGQCISLAWRCDGDHDCA-----DKSD 194

Query: 282 EDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCH 341
           E       C   +  CA  + CI   W+CD E DC      D +DE            C 
Sbjct: 195 ERNCTGKTCKPFEFACANGRHCIQRKWICDGENDCG-----DRSDE-----VDCGLESCG 244

Query: 342 PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN-NKADCENLKCSHKCSPTPRGAMC 400
            +  RC ++++C+A S+ CDG+ DC +  DEGP C  ++    N  C+  C   P G  C
Sbjct: 245 NDRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLDQCHSNNGGCAQLCMDVPEGVQC 304

Query: 401 FCPAG---QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
            C  G    + NKT C D +ECL   SC Q C NT  S+ C C +GY L PD + C A +
Sbjct: 305 SCRPGFTLASDNKT-CEDINECLNSSSCSQRCFNTRGSFSCKCVQGYRLEPDKRRCKAAD 363

Query: 458 VPQDEPASIIFSSTVDIRRIHL 479
             +     + FS+  +IR++ L
Sbjct: 364 SIR---PFLYFSTRREIRKLGL 382

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|158300186|ref|XP_320185.4| AGAP012372-PA [Anopheles gambiae str. PEST] gi|157013036|gb|EAA00393.5| AGAP012372-PA [Anopheles gambiae str. PEST]

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 133/246 (54%), Gaps = 20/246 (8%)

Query: 245 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW-DKFHQCFNGQVQCALSKKC 303
           C   Q  C +  KCIP  W CD   DCS     D +DE   DK H C  G   C +S +C
Sbjct: 5   CSQSQFTCVMDGKCIPALWRCDTSADCS-----DGSDEVGCDKAHACNEGMFHCTVSNRC 59

Query: 304 IPHNWLCDEEMDCS---TDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFC 360
           IPH+W CD ++DC      D+VD +DED     +H    C P +  C S  +C+ + +FC
Sbjct: 60  IPHDWTCDGDVDCGLVEKYDMVDVSDEDPQLCRAHTK--CLPTQALC-SDGKCLEIDRFC 116

Query: 361 DGKPDCSNGE------DEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCV 414
           DG  DCSN E      D        + C+ LKCS+ C  T  GA CFC     PN + C 
Sbjct: 117 DGAWDCSNDELNCSSNDTATASAPTSACDALKCSYDCRLTSEGARCFCAKDSQPNGSVCE 176

Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDI 474
           D DEC I+G CDQ C N   +Y CSCT GY  +  G +CTAVN+P+DEP S+ F++   +
Sbjct: 177 DFDECQIEGLCDQMCKNQPGAYQCSCTTGYVRQ--GNTCTAVNLPKDEPTSLFFTTFNKV 234

Query: 475 RRIHLN 480
           +++ ++
Sbjct: 235 KKVSIS 240

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|297471646|ref|XP_002685354.1| PREDICTED: low-density lipoprotein receptor-related protein 2 [Bos taurus] gi|296490675|tpg|DAA32788.1| TPA: low-density lipoprotein receptor-related protein 2-like [Bos taurus]

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 173/362 (47%), Gaps = 61/362 (16%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC-NAECTPGQFSCGMGKCIPESWK 223
           CH N+  C +   C+  S  CDG+ DC++G DE   C    C+  QF+C  G+CIP  ++
Sbjct: 102 CHSNQFLCPNEQLCIPESWVCDGEDDCNDGADERRHCPGITCSSRQFTCENGECIPGEFR 161

Query: 224 CDGFVDCLEDGSDEPN------------------------------------TCIHQCFN 247
           CD   DCL DG+DE N                                     C H+C  
Sbjct: 162 CDHSTDCL-DGTDEKNCRYPVCEQLTCADGACYNTSQRCNGQVDCRDASDERNCTHRCTR 220

Query: 248 GQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW-DKFHQCFNGQVQCALSKKCIPH 306
            + QC  S +CIP  ++CD E+DC      D +DE     +  C   +  C  +  CI  
Sbjct: 221 TEFQCG-SGQCIPRTYVCDHEIDCE-----DGSDEHSCPAYRTCKGNEFTCP-NGVCIAQ 273

Query: 307 NWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDC 366
           +W+CD E DC     VDN DED  +   +    C+PNE  C  S +C+ +SK CDG  DC
Sbjct: 274 SWVCDGESDC-----VDNADEDGCESKINRTFECYPNEWACPKSGKCIPISKVCDGTLDC 328

Query: 367 SNGEDEGPFCNNKA----DCENLKCSHKCSPTPRGAMCFCPAG--QNPNKT-QCVDADEC 419
             GEDE      +      C +L C ++C  +P G MC+CP+G   N N+T  CVD D+C
Sbjct: 329 PGGEDESNITAGQQCDVNLCPSLGCEYQCHRSPGGGMCYCPSGFIVNQNRTNNCVDFDDC 388

Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHL 479
            I G CDQ C +    + C+C EGY L    K C A N    E A +IFS+  ++ +  +
Sbjct: 389 QIWGVCDQLCEDRIGHHRCNCVEGYVLERQ-KHCRA-NSSFGE-AFVIFSNGRNLLKGSI 445

Query: 480 NG 481
            G
Sbjct: 446 RG 447

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170035892|ref|XP_001845800.1| very low-density lipoprotein receptor [Culex quinquefasciatus] gi|167878399|gb|EDS41782.1| very low-density lipoprotein receptor [Culex quinquefasciatus]

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/230 (42%), Positives = 130/230 (56%), Gaps = 12/230 (5%)

Query: 257 KCIPHNWLCDEEMDCSTDDIVDNTDE-DWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMD 315
           KCIP +W CD   DC+     D +DE D DK H+C + Q QC L+ KCIP  W CD + D
Sbjct: 77  KCIPQHWKCDTYSDCA-----DGSDEIDCDKTHKCKDEQFQCKLTNKCIPRGWTCDGDAD 131

Query: 316 CSTDDIVDNTD-EDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 374
           C   +     D  D D     ++  C P +  C S+ +C+ + +FCDG  DCSN E   P
Sbjct: 132 CGVVEKFRTIDVSDEDAELCRSSRHCLPTQTVC-SNGKCLDIDRFCDGVWDCSNDELRCP 190

Query: 375 F-CNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTH 433
                 A+C+ LKCS+ C  TP G  CFC  G  PN + C D DEC IDG CDQ C N  
Sbjct: 191 KNTTTVAECDALKCSYDCRQTPNGPRCFCAKGSQPNGSICEDFDECQIDGMCDQICKNLP 250

Query: 434 LSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIH-LNGS 482
            +Y C+C  GY     G  C AVN P++EPAS++F+++ +IR+   +NGS
Sbjct: 251 GTYKCTCATGYARI--GNQCRAVNTPKEEPASLLFATSTEIRKFPVINGS 298

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427788305|gb|JAA59604.1| Putative megalin [Rhipicephalus pulchellus]

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 165/333 (49%), Gaps = 37/333 (11%)

Query: 165  CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGK-CIPESWK 223
            C   +  C  S  C+  S  CDG  DC +  DE     A C+  QF C   K CI ES++
Sbjct: 1121 CAYYQFTCPGSGHCIPRSWVCDGDNDCFDQADENNCPPAVCSSSQFQCSNKKQCIHESYR 1180

Query: 224  CDGFVDCLEDGSDE---PNTCIHQC-FNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDN 279
            CDG  DC +DGSDE   P+    QC      QC  S+ CIP  W CD   DC      D 
Sbjct: 1181 CDGVSDC-QDGSDEQGCPSLAPDQCDLEKSFQCKKSRVCIPKLWYCDGNADCE-----DG 1234

Query: 280  TDEDWDKFHQCFNGQVQCALS------KKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYF 333
            +DE       C  GQV+C  +       KCI  +W+CD   DC      DN+DED     
Sbjct: 1235 SDEP----SSC--GQVECPQNHFKCNNSKCIFKSWICDGSDDCG-----DNSDEDSRHAC 1283

Query: 334  SHNAVLCHPNELRC-GSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLK--CSHK 390
                  C   +  C G +++CV +S  CDGKPDC NG DEGP C +   C+  K  C+H 
Sbjct: 1284 VAPKFQCEHGQWLCPGVTDRCVNISSVCDGKPDCPNGADEGPGCASTP-CKGNKAGCTHG 1342

Query: 391  CSPTPRGAMCFCPAGQNPN-KTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPD 449
            C  TP G +C CP G+  N  T CVD +ECLI G+C Q CTN+  S+ CSC  GYTL   
Sbjct: 1343 CHVTPVGPLCTCPKGEVLNDTTTCVDLNECLIAGTCSQHCTNSKGSFTCSCEPGYTLELK 1402

Query: 450  GKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
             + C A N      A ++ S+   I   +L+ S
Sbjct: 1403 HR-CKATNRSD---AFLVISNRRSILVANLDTS 1431

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
UNIPROTKB|P98164	4655	LRP2 "Low-density lipoprotein	0.597	0.061	0.377	2.2e-64
ZFIN|ZDB-GENE-050208-608	4616	lrp1ba "low density lipoprotei	0.655	0.068	0.338	6e-64
MGI|MGI:95794	4660	Lrp2 "low density lipoprotein	0.639	0.066	0.349	1.9e-63
UNIPROTKB|E2R4Q1	4528	LRP1 "Uncharacterized protein"	0.609	0.064	0.364	2.2e-62
UNIPROTKB|J9P315	4544	LRP1 "Uncharacterized protein"	0.609	0.064	0.364	2.3e-62
UNIPROTKB|G3V928	4545	Lrp1 "Protein Lrp1" [Rattus no	0.609	0.064	0.364	3.7e-62
UNIPROTKB|F1NJS9	4644	LRP2 "Uncharacterized protein"	0.562	0.058	0.352	4.4e-62
UNIPROTKB|F1NCT2	4645	LRP2 "Uncharacterized protein"	0.562	0.058	0.352	4.4e-62
FB|FBgn0053087	4699	LRP1 "LDL receptor protein 1"	0.435	0.044	0.414	2.3e-42
ZFIN|ZDB-GENE-070912-401	4456	lrp1bb "low density lipoprotei	0.605	0.065	0.351	1.7e-61

UNIPROTKB|P98164 LRP2 "Low-density lipoprotein receptor-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 499 (180.7 bits), Expect = 2.2e-64, Sum P(4) = 2.2e-64
 Identities = 123/326 (37%), Positives = 154/326 (47%)

Query:   143 W-CDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC 201
             W CD+  +  +       ++   C P++  C  +++C+ LS  CDG  DC +G DE   C
Sbjct:  1126 WVCDTDNDCGDGSDEKNCNSTETCQPSQFNC-PNHRCIDLSFVCDGDKDCVDGSDEVG-C 1183

Query:   202 NAECTPGQFSCGMG-KCIPESWKCDGFVDCLEDGSDE---PNTCIHQCFNGQVQCALSKK 257
                CT  QF C  G KCI  + +CDG  DC  D SDE   P      C + + QC     
Sbjct:  1184 VLNCTASQFKCASGDKCIGVTNRCDGVFDC-SDNSDEAGCPTRPPGMCHSDEFQCQEDGI 1242

Query:   258 CIPHNWLCDEEMDC--STDD---IVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDE 312
             CIP+ W CD   DC   +D+    V  T      FH C NG         CI   WLCD 
Sbjct:  1243 CIPNFWECDGHPDCLYGSDEHNACVPKTCPS-SYFH-CDNGN--------CIHRAWLCDR 1292

Query:   313 EMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
             + DC      D +DE   K        C   + +C   N CV LS  CDG  DC NG DE
Sbjct:  1293 DNDCG-----DMSDE---KDCPTQPFRCPSWQWQCLGHNICVNLSVVCDGIFDCPNGTDE 1344

Query:   373 GPFCNNKADCENLK--CSHKCSPTPRGAMCFCPAG---QNPNKTQCVDADECLIDGSCDQ 427
              P CN  + C +    C+H+C   P GA C CP G    N +KT C D DEC I GSC Q
Sbjct:  1345 SPLCNGNS-CSDFNGGCTHECVQEPFGAKCLCPLGFLLANDSKT-CEDIDECDILGSCSQ 1402

Query:   428 TCTNTHLSYVCSCTEGYTLRPDGKSC 453
              C N   S+ CSC  GY L  DG++C
Sbjct:  1403 HCYNMRGSFRCSCDTGYMLESDGRTC 1428

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005764 "lysosome" evidence=TAS

GO:0006486 "protein glycosylation" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006897 "endocytosis" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0042359 "vitamin D metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

ZFIN|ZDB-GENE-050208-608 lrp1ba "low density lipoprotein receptor-related protein 1Ba" [Danio rerio (taxid:7955)]

 Score = 483 (175.1 bits), Expect = 6.0e-64, Sum P(5) = 6.0e-64
 Identities = 120/354 (33%), Positives = 171/354 (48%)

Query:   143 W-CDSHLNTVESVRVDGSHNAVLCHP-NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPF 200
             W CD   +  +      S +   C P  +  C ++ +C+++   CD + DC +G DE   
Sbjct:   911 WRCDRDDDCGDQSDESSSCDFPTCEPLTQFGC-TNGKCISVKWHCDSEDDCGDGSDEVG- 968

Query:   201 CNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC-------IHQCFNGQVQCA 253
             C   C+  QF C  GKCIPE W CDG  DC  D SDE  TC       I+ C   +  C 
Sbjct:   969 CVHACSVAQFQCSSGKCIPEHWMCDGDNDC-GDLSDENATCSRTAISAINDCSEKEFHCR 1027

Query:   254 LSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCF-NGQVQCALSKKCIPHNWLCDE 312
                 CIP  W CD + DC  +D  D    +  K   C    +  C +S KC+  +W+CD 
Sbjct:  1028 GDGTCIPEIWRCDGDKDC--EDGSDEFACEGAK-RMCDPKAKFTCKVSGKCVSKDWVCDG 1084

Query:   313 EMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQ-CVALSKFCDGKPDCSNGED 371
             ++DC      D +DE+          +C P +  C +    C+   + C+G  DC++  D
Sbjct:  1085 DIDCE-----DQSDEE-----GCEVSVCKPPKFPCANDTSVCLPPERICNGWKDCADHSD 1134

Query:   372 EGPFCNNKADCENLK--CSHKCSPTP-RGAMCFCPAG-QNPNKTQ-CVDADECLIDGSCD 426
             EGP+C+   +C   K  CSH+CS  P +G +C CPAG Q  +  Q C   D C     C 
Sbjct:  1135 EGPYCD---ECSIRKGGCSHECSVAPGKGVVCSCPAGFQLGSDAQTCEILDYCSKHLRCS 1191

Query:   427 QTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLN 480
             Q C     +  CSC  G++L  DG SC + + P +  A IIFS   +IRRI+L+
Sbjct:  1192 QVCEQHKNTVKCSCYPGWSLGSDGDSCYSTD-PFE--AFIIFSIRHEIRRINLH 1242

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:95794 Lrp2 "low density lipoprotein receptor-related protein 2" [Mus musculus (taxid:10090)]

 Score = 496 (179.7 bits), Expect = 1.9e-63, Sum P(4) = 1.9e-63
 Identities = 117/335 (34%), Positives = 157/335 (46%)

Query:   129 PSSLVIDYNQDI-LYW-CDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCD 186
             P+S   D +  I   W CD+  +  +         +  CHP + RC   ++C++    CD
Sbjct:  1112 PTSFTCDNHMCIPKEWVCDTDNDCSDGSDEKNCQASGTCHPTQFRC-PDHRCISPLYVCD 1170

Query:   187 GKPDCSNGEDEGPFCNAECTPGQFSCGMGK-CIPESWKCDGFVDCLEDGSDE---PNTCI 242
             G  DC +G DE   C   CT  QF C  G  CI   ++CDG  DC +D SDE   P    
Sbjct:  1171 GDKDCVDGSDEAG-CVLNCTSSQFKCADGSSCINSRYRCDGVYDC-KDNSDEAGCPTRPP 1228

Query:   243 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQ-CFNGQVQCALSK 301
               C   + QC     CIP+ W CD   DC     +  +DE      + C      C  + 
Sbjct:  1229 GMCHPDEFQCQGDGTCIPNTWECDGHPDC-----IQGSDEHNGCVPKTCSPSHFLCD-NG 1282

Query:   302 KCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCD 361
              CI ++W+CD + DC   D+ D  D     +  H    C  ++ +C   + CV LS  CD
Sbjct:  1283 NCIYNSWVCDGDNDCR--DMSDEKDCPTQPF--H----CPSSQWQCPGYSICVNLSALCD 1334

Query:   362 GKPDCSNGEDEGPFCNNKADCE-NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQ-CVDADE 418
             G  DC NG DE P CN  +    N  C+H+C   P GA C CP G Q  N T+ C D +E
Sbjct:  1335 GVFDCPNGTDESPLCNQDSCLHFNGGCTHRCIQGPFGATCVCPIGYQLANDTKTCEDVNE 1394

Query:   419 CLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
             C I G C Q C N   S+ C+C   YTL  DG++C
Sbjct:  1395 CDIPGFCSQHCVNMRGSFRCACDPEYTLESDGRTC 1429

GO:0004872 "receptor activity" evidence=ISO;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=IMP

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010165 "response to X-ray" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030492 "hemoglobin binding" evidence=ISO

GO:0030900 "forebrain development" evidence=IMP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0042954 "lipoprotein transporter activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045056 "transcytosis" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046879 "hormone secretion" evidence=ISO

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISO

UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 526 (190.2 bits), Expect = 2.2e-62, Sum P(4) = 2.2e-62
 Identities = 121/332 (36%), Positives = 166/332 (50%)

Query:   165 CHP-NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWK 223
             C P  +  C ++ +C+ ++  CD   DC +  DE   C+  C+  QF C  G+CIPE W 
Sbjct:   976 CFPLTQFTC-NNGRCININWRCDNDNDCGDNSDEAG-CSHSCSSTQFKCNSGRCIPEHWT 1033

Query:   224 CDGFVDCLEDGSDEPNT-CIHQ-------CFNGQVQCALSKKCIPHNWLCDEEMDCSTDD 275
             CDG  DC  D SDE +  C +Q       C N + QC L   CIP  W CD + DC    
Sbjct:  1034 CDGDNDC-GDYSDETHANCTNQATRPPGGCHNDEFQCRLDSLCIPLRWRCDGDTDC---- 1088

Query:   276 IVDNTDEDWDK--FHQCF-NGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKY 332
              +D++DE   +   H C  N +  C  S +CI   W+CD + DC      DN+DE+    
Sbjct:  1089 -MDSSDEKSCEGVTHVCDPNVKFGCKDSARCISKAWVCDGDSDCE-----DNSDEE---- 1138

Query:   333 FSHNAVLCHPNELRCGSSNQ-CVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKC 391
              +  ++ C P    C ++   C+ L K CDG  DC +G DEG  C+ +    N  CSH C
Sbjct:  1139 -NCESLACRPPSHPCANNTSVCLPLDKLCDGNDDCGDGSDEGELCD-QCSLNNGGCSHNC 1196

Query:   392 SPTP-RGAMCFCPAGQN--PNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRP 448
             S  P  G +C CP G    P+   C     C     C Q C     S  CSC EG+ L P
Sbjct:  1197 SVAPGEGIVCSCPLGMELGPDNHTCQIQSYCAKHLKCSQKCDQNKFSVKCSCYEGWVLEP 1256

Query:   449 DGKSCTAVNVPQDEPASIIFSSTVDIRRIHLN 480
             DG+SC +++ P  +P  IIFS+  +IRRI L+
Sbjct:  1257 DGESCRSLD-PF-KPF-IIFSNRHEIRRIDLH 1285

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 526 (190.2 bits), Expect = 2.3e-62, Sum P(4) = 2.3e-62
 Identities = 121/332 (36%), Positives = 166/332 (50%)

Query:   165 CHP-NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWK 223
             C P  +  C ++ +C+ ++  CD   DC +  DE   C+  C+  QF C  G+CIPE W 
Sbjct:   976 CFPLTQFTC-NNGRCININWRCDNDNDCGDNSDEAG-CSHSCSSTQFKCNSGRCIPEHWT 1033

Query:   224 CDGFVDCLEDGSDEPNT-CIHQ-------CFNGQVQCALSKKCIPHNWLCDEEMDCSTDD 275
             CDG  DC  D SDE +  C +Q       C N + QC L   CIP  W CD + DC    
Sbjct:  1034 CDGDNDC-GDYSDETHANCTNQATRPPGGCHNDEFQCRLDSLCIPLRWRCDGDTDC---- 1088

Query:   276 IVDNTDEDWDK--FHQCF-NGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKY 332
              +D++DE   +   H C  N +  C  S +CI   W+CD + DC      DN+DE+    
Sbjct:  1089 -MDSSDEKSCEGVTHVCDPNVKFGCKDSARCISKAWVCDGDSDCE-----DNSDEE---- 1138

Query:   333 FSHNAVLCHPNELRCGSSNQ-CVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKC 391
              +  ++ C P    C ++   C+ L K CDG  DC +G DEG  C+ +    N  CSH C
Sbjct:  1139 -NCESLACRPPSHPCANNTSVCLPLDKLCDGNDDCGDGSDEGELCD-QCSLNNGGCSHNC 1196

Query:   392 SPTP-RGAMCFCPAGQN--PNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRP 448
             S  P  G +C CP G    P+   C     C     C Q C     S  CSC EG+ L P
Sbjct:  1197 SVAPGEGIVCSCPLGMELGPDNHTCQIQSYCAKHLKCSQKCDQNKFSVKCSCYEGWVLEP 1256

Query:   449 DGKSCTAVNVPQDEPASIIFSSTVDIRRIHLN 480
             DG+SC +++ P  +P  IIFS+  +IRRI L+
Sbjct:  1257 DGESCRSLD-PF-KPF-IIFSNRHEIRRIDLH 1285

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)]

 Score = 523 (189.2 bits), Expect = 3.7e-62, Sum P(4) = 3.7e-62
 Identities = 121/332 (36%), Positives = 167/332 (50%)

Query:   165 CHP-NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWK 223
             C P  +  C ++ +C+ ++  CD   DC +  DE   C+  C+  QF C  G+CIPE W 
Sbjct:   977 CFPLTQFTC-NNGRCININWRCDNDNDCGDNSDEAG-CSHSCSSTQFKCNSGRCIPEHWT 1034

Query:   224 CDGFVDCLEDGSDEPNT-CIHQ-------CFNGQVQCALSKKCIPHNWLCDEEMDCSTDD 275
             CDG  DC  D SDE +  C +Q       C + + QC L   CIP  W CD + DC    
Sbjct:  1035 CDGDNDC-GDYSDETHANCTNQATRPPGGCHSDEFQCRLDGLCIPLRWRCDGDTDC---- 1089

Query:   276 IVDNTDEDWDK--FHQCF-NGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKY 332
              +D++DE   +   H C  N +  C  S +CI   W+CD + DC      DN+DE+    
Sbjct:  1090 -MDSSDEKGCEGVTHVCDPNVKFGCKDSARCISKAWVCDGDSDCE-----DNSDEE---- 1139

Query:   333 FSHNAVLCHPNELRCGSSNQ-CVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKC 391
              +  A+ C P    C ++   C++  K CDGK DC +G DEG  C+ +    N  CSH C
Sbjct:  1140 -NCEALACRPPSHPCANNTSVCLSPDKLCDGKDDCGDGSDEGELCD-QCSLNNGGCSHNC 1197

Query:   392 SPTP-RGAMCFCPAGQN--PNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRP 448
             S  P  G +C CP G    P+   C     C     C Q C     S  CSC EG+ L P
Sbjct:  1198 SVAPGEGIVCSCPLGMELGPDNHTCQIQSYCAKHLKCSQKCDQNKFSVKCSCYEGWVLEP 1257

Query:   449 DGKSCTAVNVPQDEPASIIFSSTVDIRRIHLN 480
             DG+SC +++ P  +P  IIFS+  +IRRI L+
Sbjct:  1258 DGESCRSLD-PF-KPF-IIFSNRHEIRRIDLH 1286

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

UNIPROTKB|F1NJS9 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 466 (169.1 bits), Expect = 4.4e-62, Sum P(4) = 4.4e-62
 Identities = 105/298 (35%), Positives = 141/298 (47%)

Query:   165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMG-KCIPESWK 223
             C P + +C   ++C+     CDG  DC +G DE   C   C+  +F C  G +CI   ++
Sbjct:  1134 CEPRQFQC-PDHRCIDPYYVCDGDKDCVDGADEHD-CIYNCSGTEFKCVSGDQCISSYYQ 1191

Query:   224 CDGFVDCLEDGSDE---PNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
             CDG  DC  D SDE   P      C   + QC     CIP NW CD  +DC+     D +
Sbjct:  1192 CDGVFDC-NDHSDETDCPTRPPGMCHQNEFQCQSDGNCIPANWECDGHLDCA-----DGS 1245

Query:   281 DEDWD-KFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVL 339
             DE        C     +C  +  C+   W+CD + DC   D+ D  D     +       
Sbjct:  1246 DEHHRCPARTCPPSLFRCD-NGNCVYRAWICDGDNDCR--DMSDERDCPTQPF------R 1296

Query:   340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCEN-LKCSHKCSPTPRGA 398
             C   + +C   + CV LSK CD   DC NG DE P CN ++  +N   C+H+C   P GA
Sbjct:  1297 CPSWQWQCPGHSICVNLSKVCDNSADCPNGADESPLCNQESCSDNNAGCTHECIQGPFGA 1356

Query:   399 MCFCPAGQ---NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
              C CP G    N +KT C D +EC   G C Q C N   S+ C C EGY L  +G++C
Sbjct:  1357 QCTCPVGYQLTNDSKT-CEDINECDPPGFCSQHCYNERGSFRCYCDEGYILETNGRTC 1413

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NCT2 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 466 (169.1 bits), Expect = 4.4e-62, Sum P(4) = 4.4e-62
 Identities = 105/298 (35%), Positives = 141/298 (47%)

Query:   165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMG-KCIPESWK 223
             C P + +C   ++C+     CDG  DC +G DE   C   C+  +F C  G +CI   ++
Sbjct:  1134 CEPRQFQC-PDHRCIDPYYVCDGDKDCVDGADEHD-CIYNCSGTEFKCVSGDQCISSYYQ 1191

Query:   224 CDGFVDCLEDGSDE---PNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
             CDG  DC  D SDE   P      C   + QC     CIP NW CD  +DC+     D +
Sbjct:  1192 CDGVFDC-NDHSDETDCPTRPPGMCHQNEFQCQSDGNCIPANWECDGHLDCA-----DGS 1245

Query:   281 DEDWD-KFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVL 339
             DE        C     +C  +  C+   W+CD + DC   D+ D  D     +       
Sbjct:  1246 DEHHRCPARTCPPSLFRCD-NGNCVYRAWICDGDNDCR--DMSDERDCPTQPF------R 1296

Query:   340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCEN-LKCSHKCSPTPRGA 398
             C   + +C   + CV LSK CD   DC NG DE P CN ++  +N   C+H+C   P GA
Sbjct:  1297 CPSWQWQCPGHSICVNLSKVCDNSADCPNGADESPLCNQESCSDNNAGCTHECIQGPFGA 1356

Query:   399 MCFCPAGQ---NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
              C CP G    N +KT C D +EC   G C Q C N   S+ C C EGY L  +G++C
Sbjct:  1357 QCTCPVGYQLTNDSKT-CEDINECDPPGFCSQHCYNERGSFRCYCDEGYILETNGRTC 1413

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

FB|FBgn0053087 LRP1 "LDL receptor protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 468 (169.8 bits), Expect = 2.3e-42, P = 2.3e-42
 Identities = 95/229 (41%), Positives = 127/229 (55%)

Query:   258 CIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCS 317
             CIP  W CD + DC      D +DE  +   +C  GQ +C +S+ CIP+NWLCD E DC 
Sbjct:    51 CIPMRWKCDSKADCP-----DMSDEGSECAPKCNEGQFRCGVSRHCIPNNWLCDGEFDCG 105

Query:   318 TDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN 377
               DI D  +       + +   C   E +C + + C+ LS+FCDG+ DC N E +   C+
Sbjct:   106 KGDISDELNCP-----NGDTPKCRAFEGQCRNGD-CLELSRFCDGRWDCDNDELQ---CD 156

Query:   378 NK-ADCENLKCSHKCSPTPRGAMCFCPAGQNP---NKTQCVDADECLIDGSCDQTCTNTH 433
              + A C  L CS  C  TP+GA C+CP  Q P   N T+CVD DEC   G+CDQ C NT 
Sbjct:   157 KQNAACAALNCSFNCKLTPQGARCYCPKDQVPESSNSTRCVDYDECSEPGTCDQVCRNTP 216

Query:   434 LSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
              SY CSC  GY  +  G  C A+NVP  EP ++IF S   ++ +  NG+
Sbjct:   217 GSYECSCVSGYA-KTKGNRCRAINVPPTEPTTLIFLSRDGVQSVGTNGT 264

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-070912-401 lrp1bb "low density lipoprotein receptor-related protein 1Bb" [Danio rerio (taxid:7955)]

 Score = 481 (174.4 bits), Expect = 1.7e-61, Sum P(3) = 1.7e-61
 Identities = 115/327 (35%), Positives = 161/327 (49%)

Query:   168 NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGF 227
             ++  C ++ +C+++   CD   DC +  DE   C   C  GQ+ C  G+CIP+ W CDG 
Sbjct:   858 SQFSC-ANGRCISMKWHCDSDDDCGDNSDEAG-CVHFCANGQYKCTSGRCIPDHWACDGD 915

Query:   228 VDCLEDGSDEPNTCIH--------QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDN 279
              DC  D SDE  TC          +C   +  C     CIP  W CD + DC  +D  D 
Sbjct:   916 NDC-GDFSDENVTCAGVAPALPPVECSAEEFHCRADGTCIPERWRCDGDKDC--EDGSDE 972

Query:   280 TDEDWDKFHQCF-NGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAV 338
             T+    K   C    +  C  S KCI  +W+CD + DC      D +DE+     S  + 
Sbjct:   973 TNCKGVK-RMCDPQAKFTCKTSGKCISKSWVCDGDDDCE-----DRSDEE-----SCVSS 1021

Query:   339 LCHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTP-R 396
             +C P    C + S+ C+  +K CDG+ DC++  DEGPFC       N  CSH+CS  P +
Sbjct:  1022 ICKPPTQPCANDSSICLPQNKICDGRMDCADRSDEGPFCERCLQ-GNGGCSHQCSVIPSK 1080

Query:   397 GAMCFCPAGQN---PNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
             G +C CPAG +    N+T C   D C     C Q C     +  CSC  G+ L  DG+SC
Sbjct:  1081 GVVCSCPAGLHLGSDNRT-CEAVDYCSAHLKCSQICEQHKTTVKCSCYPGWRLDADGESC 1139

Query:   454 TAVNVPQDEPASIIFSSTVDIRRIHLN 480
              + + P +  A +IFS   +IRRI L+
Sbjct:  1140 HSTD-PFE--AFVIFSIRHEIRRIDLH 1163

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	482
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	1e-08
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	8e-08
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	2e-07
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	9e-07
cd01475	224	cd01475, vWA_Matrilin, VWA_Matrilin: In cartilagin	8e-06
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	1e-04
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	1e-04
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	3e-04
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	3e-04
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	4e-04
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	4e-04
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	0.001
pfam12662	24	pfam12662, cEGF, Complement Clr-like EGF-like	0.001
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	0.002

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 21/35 (60%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C P +F C  G+CIP SW CDG  DC  DGSDE N
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDC-GDGSDEEN 34

Length = 35

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 121 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSH 160
           L++  +  P+ L +D+ +  LYW D  L+ +E   +DG++
Sbjct: 3   LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 21/34 (61%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDE 237
            C PG+F C  G+CIP SW CDG  DC  DGSDE
Sbjct: 1   TCPPGEFQCDNGRCIPSSWVCDGVDDC-GDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C P +F CG G+CIP SW CDG  DC EDGSDE N
Sbjct: 3   CGPDEFQCGSGECIPMSWVCDGDPDC-EDGSDEKN 36

Length = 37

>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 413 CVDADEC-LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKS 452
           CV  D C  +   C Q C +T  SY+C+CTEGY L  D K+
Sbjct: 184 CVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. Length = 224

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C PNE RC +  +C+  S  CDG+ DC +G DE
Sbjct: 1   CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDE 32

Length = 35

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C PNE RC +  +C+  S  CDG+ DC +G DE
Sbjct: 1   CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDE 32

Length = 35

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C P E +C +  +C+  S  CDG  DC +G DE
Sbjct: 2   CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C P E +C +  +C+  S  CDG  DC +G DE
Sbjct: 2   CPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C P+E +CGS  +C+ +S  CDG PDC +G DE
Sbjct: 3   CGPDEFQCGSG-ECIPMSWVCDGDPDCEDGSDE 34

Length = 37

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C P+E +CGS  +C+ +S  CDG PDC +G DE
Sbjct: 3   CGPDEFQCGSG-ECIPMSWVCDGDPDCEDGSDE 34

Length = 37

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 104 LDERLEKAGMHGENRSPLVTKNIQWPSSLVIDY 136
           L   +  A ++G +R  L ++++QWP+ + +D 
Sbjct: 10  LRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 435 SYVCSCTEGYTLRPDGKSCTAVN 457
           SY CSC  GY L  DG++C  ++
Sbjct: 1   SYTCSCPPGYQLSGDGRTCEDID 23

cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteristic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue. Length = 24

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 415 DADECLIDGSCDQ--TCTNTHLSYVCSCTEGYTLRPDGKSCT 454
           D DEC     C    TC NT  SY C C  GYT   DG++C 
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	482
KOG1215|consensus	877		99.84
KOG1215|consensus	877		99.24
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.91
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.89
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.81
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.74
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.65
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.47
KOG1214|consensus	1289		98.43
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.43
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	98.4
KOG1219|consensus	4289		98.18
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.09
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.06
PF12662	24	cEGF: Complement Clr-like EGF-like	98.0
KOG1219|consensus	4289		97.38
KOG1214|consensus	1289		97.28
KOG4260|consensus	350		97.17
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	96.98
PF12662	24	cEGF: Complement Clr-like EGF-like	96.78
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	96.2
KOG2397|consensus	480		96.13
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	95.94
KOG1217|consensus	487		95.88
KOG4289|consensus	2531		95.4
KOG1217|consensus	487		95.27
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	95.01
KOG4260|consensus	350		94.84
KOG3509|consensus	964		94.3
KOG2397|consensus	480		93.84
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	93.42
smart00181	35	EGF Epidermal growth factor-like domain.	93.42
KOG4289|consensus	2531		92.95
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	92.94
KOG3509|consensus	964		92.91
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	91.45
cd00053	36	EGF Epidermal growth factor domain, found in epide	89.25
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	89.23
smart00181	35	EGF Epidermal growth factor-like domain.	88.69
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	84.59
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	84.16
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	81.98
cd00053	36	EGF Epidermal growth factor domain, found in epide	81.26
KOG1225|consensus	525		80.21

>KOG1215|consensus

Probab=99.84  E-value=3.5e-20  Score=211.54  Aligned_cols=324  Identities=32%  Similarity=0.614  Sum_probs=250.1

Q ss_pred             CCCCcceeeCCceecCceeeCCCCCCCcccCCCCCCccccccCCCC----------------------------------
Q psy14262        115 GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSH----------------------------------  160 (482)
Q Consensus       115 ~~~~~~~~~~~~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~~~c----------------------------------  160 (482)
                      |+.+..++-...-||+++..|....+.+|.|++...+|..++++.-                                  
T Consensus        25 g~~~~~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~~l~~~~~~~y~~d~~v~~~~~~sg~~~~~~~~  104 (877)
T KOG1215|consen   25 GGERKILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRRALTLFEDGLYWTDKSVSAANKKTGKDVTRLSQ  104 (877)
T ss_pred             CcceEEeeccceeCCCcceecchhheeeeccccCCceEEeccCCccceeeeeeccceeeccchhhhhccCCCCcceeehh
Confidence            3444455555677888888888899999999999888887776631                                  


Q ss_pred             -----------------------------CCccCCCCCeecC--CCCceecCCcccCCCCCCCCCCCCCCCCC---CCCC
Q psy14262        161 -----------------------------NAVLCHPNELRCG--SSNQCVALSKFCDGKPDCSNGEDEGPFCN---AECT  206 (482)
Q Consensus       161 -----------------------------~~~~C~~~~f~C~--~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~---~~C~  206 (482)
                                                   +...|...+|+|.  +. +||+..|+|||..+|.+|+||.+ |.   ....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~Cip~~~~cd~~~~C~dg~de~~-~~~~~~~~~  182 (877)
T KOG1215|consen  105 DSHFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSCRTGSC-KCIPGDWLCDGEADCPDGSDELN-CAVRRCEPR  182 (877)
T ss_pred             cCCCCcceeEEecCCCCCCCCcccccCCCCCccccCCCCCCcCccc-cCCCCceeCCCCCccccchhhhc-ccccccCcc
Confidence                                         0123566789998  44 89999999999999999999998 64   1222


Q ss_pred             CCceecCCCCeeccCCCCCCCcCCCCCCCCCCCccccccc---CCccccCCCCceecCCCccCccCCCCCCCCCCCCCCC
Q psy14262        207 PGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCF---NGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED  283 (482)
Q Consensus       207 ~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~---~~~f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE~  283 (482)
                      ...|+|     |...++||+..+| .+++|+.......+.   ...++|.+.++||...+.|||..+|.     +++||.
T Consensus       183 ~~~~~~-----~~~~~~~d~~~~~-~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~-----~~~de~  251 (877)
T KOG1215|consen  183 GASLDC-----IVAIKVCDIQHDC-ADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCV-----DGPDEG  251 (877)
T ss_pred             cccccc-----ceeeeecCccccc-ccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccc-----cCCcCc
Confidence            344555     9999999999999 999999887544443   46788985569999999999999999     999994


Q ss_pred             --CCCCccccCcccccCCCCccCCCCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCCCcccCCCCcccccccccC
Q psy14262        284 --WDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCD  361 (482)
Q Consensus       284 --~C~~~~C~~~~f~C~~g~~Ci~~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~~f~C~~g~~Ci~~~~~CD  361 (482)
                        ++....|...++.|.++ .|++...+|+|..||+     +|+||..   |..  ..+.+..|.|..+ + |...++|+
T Consensus       252 ~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~g~~d~p-----dg~de~~---~~~--~~~~~~~~d~~~~-~-i~~~~~~~  318 (877)
T KOG1215|consen  252 VMNCSDATCEAPEIECADG-DCSDRQKLCDGDLDCP-----DGLDEDY---CKK--KLYWSMNVDGSGR-R-ILLSKLCH  318 (877)
T ss_pred             eeEeeccccCCcceeecCC-CCccceEEecCccCCC-----Ccccccc---ccc--ceeeeeecccCCc-e-eeecccCc
Confidence              66667788889999876 9999999999999999     9999987   754  2233667888877 8 99999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcc--CCCCcCCCCCCCCCccccCCCCc--cCCCCCccccccccCCCCCCceee-ecCCce
Q psy14262        362 GKPDCSNGEDEGPFCNNKADCE--NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADECLIDGSCDQTCT-NTHLSY  436 (482)
Q Consensus       362 g~~dC~dgsDE~~~C~~~~~C~--~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~eC~~~~~Cs~~C~-n~~gsy  436 (482)
                      +     ...+..+      ++.  ...+.+.+.+......+.|..++  .....+ ....++..++.|+|.|. +.++.|
T Consensus       319 ~-----~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~Csq~C~~~~p~~~  386 (877)
T KOG1215|consen  319 G-----YWTDGLN------ECAERVLKCSHKCPDVSVGPRCDCMGAKVLPLGART-DSNPCESDNGGCSQLCVPNSPGTF  386 (877)
T ss_pred             c-----ccccccc------cchhhcccccCCCCccccCCcccCCccceecccccc-cCCcccccCCccceeccCCCCCce
Confidence            8     1233322      443  45666778888888999999988  222322 12233336799999999 569999


Q ss_pred             EEecCCCeEECCCCCccccCCCCCCCCcEEEeccCCceEEEeccC
Q psy14262        437 VCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNG  481 (482)
Q Consensus       437 ~C~C~~Gy~l~~d~~tC~didec~~~p~~l~~~~~~~ir~~~l~~  481 (482)
                      +|.|..||.+..++  |...+   ...++|+|+++++||++.|..
T Consensus       387 ~c~c~~g~~~~~~~--c~~~~---~~~~~l~~s~~~~ir~~~~~~  426 (877)
T KOG1215|consen  387 KCACSPGYELRLDK--CEASD---QPEAFLLFSNRHDIRRISLDC  426 (877)
T ss_pred             eEecCCCcEeccCC--ceecC---CCCcEEEEecCccceecccCC
Confidence            99999999998766  66554   334599999999999999875

>KOG1215|consensus

Probab=99.24  E-value=3.8e-11  Score=137.56  Aligned_cols=166  Identities=27%  Similarity=0.421  Sum_probs=136.8

Q ss_pred             ceeeC--C-ceecCceeeCCCCCCCcccCCCCCCccccccCCCCCCcc--CCCCCeecCCCCceecCCcccCCCCCCCCC
Q psy14262        120 PLVTK--N-IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL--CHPNELRCGSSNQCVALSKFCDGKPDCSNG  194 (482)
Q Consensus       120 ~~~~~--~-~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~~~c~~~~--C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dg  194 (482)
                      .|.|.  . .|||..|+||+..+|.+      |+||.     .+....  .....|.|      |...++||+..+|.++
T Consensus       142 ~~~c~~~~~~Cip~~~~cd~~~~C~d------g~de~-----~~~~~~~~~~~~~~~~------~~~~~~~d~~~~~~~~  204 (877)
T KOG1215|consen  142 KFSCRTGSCKCIPGDWLCDGEADCPD------GSDEL-----NCAVRRCEPRGASLDC------IVAIKVCDIQHDCADD  204 (877)
T ss_pred             CCCCcCccccCCCCceeCCCCCcccc------chhhh-----cccccccCcccccccc------ceeeeecCcccccccc
Confidence            45565  4 99999999999999999      99999     454221  22233444      8899999999999999


Q ss_pred             CCCCCCCC-CCCC---CCceecCCC-CeeccCCCCCCCcCCCCCCCCCC--CcccccccCCccccCCCCceecCCCccCc
Q psy14262        195 EDEGPFCN-AECT---PGQFSCGMG-KCIPESWKCDGFVDCLEDGSDEP--NTCIHQCFNGQVQCALSKKCIPHNWLCDE  267 (482)
Q Consensus       195 sDE~~~C~-~~C~---~~~f~C~~g-~Ci~~~~~CDg~~dC~~dgsDE~--~C~~~~C~~~~f~C~~~g~Ci~~~~~CDg  267 (482)
                      +|+.. +. ..+.   ...++|..+ +||..++.|||..|| .+++||.  ++....|...++.|. ++.|++..++|+|
T Consensus       205 ~d~~~-~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc-~~~~de~~~~~~~~~~~~~e~~~~-~~~~~~~~~~~~g  281 (877)
T KOG1215|consen  205 YDESE-GRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDC-VDGPDEGVMNCSDATCEAPEIECA-DGDCSDRQKLCDG  281 (877)
T ss_pred             ccccc-CcccccCCcceeEEEecCCCcEEeehhccCCCccc-ccCCcCceeEeeccccCCcceeec-CCCCccceEEecC
Confidence            99987 43 1122   467899875 999999999999999 9999994  676667888899998 9999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCccccCcccccCCCCccCCCCCCCCC
Q psy14262        268 EMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDE  312 (482)
Q Consensus       268 ~~dC~~~~~~dgsDE~~C~~~~C~~~~f~C~~g~~Ci~~~~~CDg  312 (482)
                      ..+|+     +|+||..|....+....|.|..+ + |+...+|++
T Consensus       282 ~~d~p-----dg~de~~~~~~~~~~~~~d~~~~-~-i~~~~~~~~  319 (877)
T KOG1215|consen  282 DLDCP-----DGLDEDYCKKKLYWSMNVDGSGR-R-ILLSKLCHG  319 (877)
T ss_pred             ccCCC-----CcccccccccceeeeeecccCCc-e-eeecccCcc
Confidence            99999     99999998866665778899866 8 999998876

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.91  E-value=9e-10  Score=74.98  Aligned_cols=36  Identities=39%  Similarity=0.985  Sum_probs=33.2

Q ss_pred             ccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         4 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      .|.+++|+|. ++.|||..|+|||+.||+     |+|||.+|
T Consensus         2 ~C~~~~f~C~-~~~CI~~~~~CDg~~DC~-----dgsDE~~C   37 (37)
T PF00057_consen    2 TCPPGEFRCG-NGQCIPKSWVCDGIPDCP-----DGSDEQNC   37 (37)
T ss_dssp             SSSTTEEEET-TSSEEEGGGTTSSSCSSS-----SSTTTSSH
T ss_pred             cCcCCeeEcC-CCCEEChHHcCCCCCCCC-----CCcccccC
Confidence            6899999999 888999999999999998     99999754

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.89  E-value=8.4e-10  Score=74.27  Aligned_cols=35  Identities=43%  Similarity=1.048  Sum_probs=32.0

Q ss_pred             cCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          5 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         5 C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      |.+++|+|. +++|||..|+|||+.||+     |+|||..|
T Consensus         1 C~~~~f~C~-~~~Ci~~~~~CDg~~DC~-----dgsDE~~C   35 (35)
T cd00112           1 CPPNEFRCA-NGRCIPSSWVCDGEDDCG-----DGSDEENC   35 (35)
T ss_pred             CCCCeEEcC-CCCeeCHHHcCCCccCCC-----CCcccccC
Confidence            678999998 799999999999999998     99999743

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.81  E-value=3.6e-09  Score=72.01  Aligned_cols=35  Identities=51%  Similarity=1.155  Sum_probs=18.4

Q ss_pred             cCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        164 LCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       164 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      .|.+.+|+|.++ +||+..|+|||+.||.|||||.+
T Consensus         2 ~C~~~~f~C~~~-~CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    2 TCPPGEFRCGNG-QCIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             SSSTTEEEETTS-SEEEGGGTTSSSCSSSSSTTTSS
T ss_pred             cCcCCeeEcCCC-CEEChHHcCCCCCCCCCCccccc
Confidence            345555555554 35555555555555555555543

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.74  E-value=6e-09  Score=70.11  Aligned_cols=34  Identities=47%  Similarity=1.116  Sum_probs=20.9

Q ss_pred             CCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       165 C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      |.+.+|+|.++ +||+..++|||+.||+|||||.+
T Consensus         1 C~~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CCCCeEEcCCC-CeeCHHHcCCCccCCCCCccccc
Confidence            44556666664 66666666666666666666654

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.65  E-value=1.7e-08  Score=67.00  Aligned_cols=33  Identities=48%  Similarity=1.145  Sum_probs=30.2

Q ss_pred             ccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCc
Q psy14262          4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE   42 (482)
Q Consensus         4 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE   42 (482)
                      .|.+.+|+|. ++.|||..|+|||++||+     |+|||
T Consensus         1 ~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~-----dgsDE   33 (33)
T smart00192        1 TCPPGEFQCD-NGRCIPLSWVCDGVDDCS-----DGSDE   33 (33)
T ss_pred             CCCCCeEECC-CCCEECchhhCCCcCcCc-----CCCCC
Confidence            3777899998 899999999999999998     88997

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.47  E-value=1.1e-07  Score=63.14  Aligned_cols=32  Identities=50%  Similarity=1.183  Sum_probs=24.6

Q ss_pred             CCCCCeecCCCCceecCCcccCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE  197 (482)
Q Consensus       165 C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE  197 (482)
                      |...+|+|.++ .||+..++|||+.||+|||||
T Consensus         2 C~~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNG-RCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence            44567888766 688888888888888888887

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1214|consensus

Probab=98.43  E-value=3e-07  Score=99.03  Aligned_cols=147  Identities=32%  Similarity=0.762  Sum_probs=100.3

Q ss_pred             ccCcccccCCCCccCCC---CCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCCCcccCCCCccccc--ccccCCCC
Q psy14262        290 CFNGQVQCALSKKCIPH---NWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVAL--SKFCDGKP  364 (482)
Q Consensus       290 C~~~~f~C~~g~~Ci~~---~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~~f~C~~g~~Ci~~--~~~CDg~~  364 (482)
                      |..+.-.|..+..|.+.   .|.|    .|+.++-+||   .+   |.. +..|......|+....||+.  +++|    
T Consensus       695 Cy~gsh~cdt~a~C~pg~~~~~tc----ecs~g~~gdg---r~---c~d-~~eca~~~~~CGp~s~Cin~pg~~rc----  759 (1289)
T KOG1214|consen  695 CYDGSHMCDTTARCHPGTGVDYTC----ECSSGYQGDG---RN---CVD-ENECATGFHRCGPNSVCINLPGSYRC----  759 (1289)
T ss_pred             ceecCcccCCCccccCCCCcceEE----EEeeccCCCC---CC---CCC-hhhhccCCCCCCCCceeecCCCceeE----
Confidence            43334445555566653   4555    5664443333   33   443 23566666788887799976  7888    


Q ss_pred             CCCCC---CCCCCCCC-------CCCCcc--CCCCc----CCCCCC-CCCccccCCCCccCCCCCccccccccCCCCC--
Q psy14262        365 DCSNG---EDEGPFCN-------NKADCE--NLKCS----HKCSPT-PRGAMCFCPAGQNPNKTQCVDADECLIDGSC--  425 (482)
Q Consensus       365 dC~dg---sDE~~~C~-------~~~~C~--~~~C~----~~C~~~-~~~~~C~C~~G~~~~~~~C~di~eC~~~~~C--  425 (482)
                      .|.-|   +|+...|.       .+ .|.  ++.|.    .+|+.. .+.|.|.|.+||..++..|.+++||. +..|  
T Consensus       760 eC~~gy~F~dd~~tCV~i~~pap~n-~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvDeC~-psrChp  837 (1289)
T KOG1214|consen  760 ECRSGYEFADDRHTCVLITPPAPAN-PCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDVDECS-PSRCHP  837 (1289)
T ss_pred             EEeecceeccCCcceEEecCCCCCC-ccccCccccCcCCceEEEecCCceEEEeecCCccCCccccccccccC-ccccCC
Confidence            77776   46655576       23 565  34442    145543 34799999999988999999999998 7788  


Q ss_pred             CceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        426 DQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       426 s~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      ..+|+|++|+|.|.|.+||.  .|+..|..
T Consensus       838 ~A~CyntpgsfsC~C~pGy~--GDGf~CVP  865 (1289)
T KOG1214|consen  838 AATCYNTPGSFSCRCQPGYY--GDGFQCVP  865 (1289)
T ss_pred             CceEecCCCcceeecccCcc--CCCceecC
Confidence            45999999999999999998  45777764

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.43  E-value=2.2e-07  Score=84.76  Aligned_cols=68  Identities=35%  Similarity=0.688  Sum_probs=60.1

Q ss_pred             CCCeecCCCCce-ecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCC----CeeccCCCCCCCcC---CCCCCCCC
Q psy14262        167 PNELRCGSSNQC-VALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMG----KCIPESWKCDGFVD---CLEDGSDE  237 (482)
Q Consensus       167 ~~~f~C~~~~~C-i~~~~~CDg~~dC~dgsDE~~~C~~~C~~~~f~C~~g----~Ci~~~~~CDg~~d---C~~dgsDE  237 (482)
                      .+.|+|.++.+= |+.+.+.|++-||+|||||.++  ..|+...|.|.|.    .-||.+++=||+-|   | -|||||
T Consensus        35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGT--sAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~C-CDGSDE  110 (176)
T PF12999_consen   35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGT--SACSNGKFYCENKGHIPRYIPSSRVNDGICDYDIC-CDGSDE  110 (176)
T ss_pred             CCceEecCCCCceecHHHccCcceeCCCCCCcccc--ccCcCceEeeccCCCCCceeehhhhcCCcCccccc-CCCCCC
Confidence            357999988666 9999999999999999999872  3688789999875    67899999999999   9 999999

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=98.40  E-value=2.8e-07  Score=62.18  Aligned_cols=33  Identities=48%  Similarity=1.095  Sum_probs=28.8

Q ss_pred             CCCCCCceeeecCCceEEecCCCeEECCCCCcc
Q psy14262        421 IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       421 ~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      .++.|+|+|++++++|+|.|++||+|..|+++|
T Consensus         4 ~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    4 NNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             GGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred             CCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence            358899999999999999999999999999987

...

>KOG1219|consensus

Probab=98.18  E-value=1.8e-06  Score=100.77  Aligned_cols=105  Identities=28%  Similarity=0.726  Sum_probs=86.5

Q ss_pred             cccccCCCcccCCCCccccc---ccccCCCCCCCCCCCCCCCCCCC-CCccCCCCcC--CCCCCCCCccccCCCCccCCC
Q psy14262        337 AVLCHPNELRCGSSNQCVAL---SKFCDGKPDCSNGEDEGPFCNNK-ADCENLKCSH--KCSPTPRGAMCFCPAGQNPNK  410 (482)
Q Consensus       337 ~~~C~~~~f~C~~g~~Ci~~---~~~CDg~~dC~dgsDE~~~C~~~-~~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~  410 (482)
                      +..|+  ..+|.+|+.|++.   .|.|    .|+..+-+.+ |.+. .+|.++||..  +|....++|.|.|+.||  .|
T Consensus      3864 ~d~C~--~npCqhgG~C~~~~~ggy~C----kCpsqysG~~-CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gy--TG 3934 (4289)
T KOG1219|consen 3864 TDPCN--DNPCQHGGTCISQPKGGYKC----KCPSQYSGNH-CEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGY--TG 3934 (4289)
T ss_pred             ccccc--cCcccCCCEecCCCCCceEE----eCcccccCcc-cccccccccCCCCCCCCEEEecCCCeeEeCCCCc--cC
Confidence            34563  4589999999986   7899    9999888888 8732 2788888875  89999999999999999  78


Q ss_pred             CCcc--ccccccCCCCC--CceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        411 TQCV--DADECLIDGSC--DQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       411 ~~C~--di~eC~~~~~C--s~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      .+|+  .++||+ ...|  .++|+|++|+|.|.|.+||.    +++|.+
T Consensus      3935 ~~Ce~~Gi~eCs-~n~C~~gg~C~n~~gsf~CncT~g~~----gr~c~~ 3978 (4289)
T KOG1219|consen 3935 KRCEARGISECS-KNVCGTGGQCINIPGSFHCNCTPGIL----GRTCCA 3978 (4289)
T ss_pred             ceeecccccccc-cccccCCceeeccCCceEeccChhHh----cccCcc
Confidence            8885  378998 5677  56999999999999999997    677643

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.09  E-value=3e-06  Score=77.46  Aligned_cols=68  Identities=44%  Similarity=0.785  Sum_probs=58.4

Q ss_pred             CCceecCCC-Ce-eccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCC---ceecCCCccCccCC---CCCCCCCC
Q psy14262        207 PGQFSCGMG-KC-IPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSK---KCIPHNWLCDEEMD---CSTDDIVD  278 (482)
Q Consensus       207 ~~~f~C~~g-~C-i~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g---~Ci~~~~~CDg~~d---C~~~~~~d  278 (482)
                      .+.|.|.+| .= |+.+++.|++.|| +|||||.+-  ..|..+.|+|.|.|   .-||.++|=||+-|   |=     |
T Consensus        35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC-~DGSDEPGT--sAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CC-----D  106 (176)
T PF12999_consen   35 NGKFTCLDGSKIVIPFSQINDDYCDC-PDGSDEPGT--SACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICC-----D  106 (176)
T ss_pred             CCceEecCCCCceecHHHccCcceeC-CCCCCcccc--ccCcCceEeeccCCCCCceeehhhhcCCcCcccccC-----C
Confidence            457999887 34 8999999999999 999999853  35777899999655   57889999999999   98     9


Q ss_pred             CCCC
Q psy14262        279 NTDE  282 (482)
Q Consensus       279 gsDE  282 (482)
                      ||||
T Consensus       107 GSDE  110 (176)
T PF12999_consen  107 GSDE  110 (176)
T ss_pred             CCCC
Confidence            9999

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.06  E-value=5.3e-06  Score=58.16  Aligned_cols=39  Identities=51%  Similarity=1.016  Sum_probs=32.7

Q ss_pred             cccccc-CCCCCC--ceeeecCCceEEecCCCeEECCCCCcc
Q psy14262        415 DADECL-IDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       415 di~eC~-~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      ||+||. ....|.  +.|+|+.|+|+|.|++||++...+.+|
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C   42 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC   42 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence            689998 457885  799999999999999999977666554

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=98.00  E-value=3.8e-06  Score=51.13  Aligned_cols=24  Identities=54%  Similarity=1.266  Sum_probs=22.5

Q ss_pred             ceEEecCCCeEECCCCCccccCCC
Q psy14262        435 SYVCSCTEGYTLRPDGKSCTAVNV  458 (482)
Q Consensus       435 sy~C~C~~Gy~l~~d~~tC~dide  458 (482)
                      ||+|+|++||+|.+++++|.||||
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            699999999999999999999986

>KOG1219|consensus

Probab=97.38  E-value=0.00017  Score=85.21  Aligned_cols=102  Identities=23%  Similarity=0.651  Sum_probs=81.4

Q ss_pred             cccCcccccCCCCccCC---CCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCCCcccCCCCccccc--ccccCCC
Q psy14262        289 QCFNGQVQCALSKKCIP---HNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVAL--SKFCDGK  363 (482)
Q Consensus       289 ~C~~~~f~C~~g~~Ci~---~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~~f~C~~g~~Ci~~--~~~CDg~  363 (482)
                      .|..  ..|.+||+|++   ..|.|    .|+     .-....+   |+.....|.++  +|.+|++||+.  .++|   
T Consensus      3866 ~C~~--npCqhgG~C~~~~~ggy~C----kCp-----sqysG~~---CEi~~epC~sn--PC~~GgtCip~~n~f~C--- 3926 (4289)
T KOG1219|consen 3866 PCND--NPCQHGGTCISQPKGGYKC----KCP-----SQYSGNH---CEIDLEPCASN--PCLTGGTCIPFYNGFLC--- 3926 (4289)
T ss_pred             cccc--CcccCCCEecCCCCCceEE----eCc-----ccccCcc---cccccccccCC--CCCCCCEEEecCCCeeE---
Confidence            4554  35989999994   78999    898     5555566   76656678654  89999999986  8899   


Q ss_pred             CCCCCCCCCCCCCC---CCCCccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        364 PDCSNGEDEGPFCN---NKADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       364 ~dC~dgsDE~~~C~---~~~~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                       .|+.|.-+.. |.   ++ +|+.+.|.+  .|.|.+++|.|.|.+||  -+++|.
T Consensus      3927 -nC~~gyTG~~-Ce~~Gi~-eCs~n~C~~gg~C~n~~gsf~CncT~g~--~gr~c~ 3977 (4289)
T KOG1219|consen 3927 -NCPNGYTGKR-CEARGIS-ECSKNVCGTGGQCINIPGSFHCNCTPGI--LGRTCC 3977 (4289)
T ss_pred             -eCCCCccCce-eeccccc-ccccccccCCceeeccCCceEeccChhH--hcccCc
Confidence             9999998887 87   34 798888876  89999999999999999  555663

>KOG1214|consensus

Probab=97.28  E-value=0.00049  Score=75.01  Aligned_cols=112  Identities=27%  Similarity=0.676  Sum_probs=76.1

Q ss_pred             CcccCCCCccccc---ccccCCCCCCCCCC--CCCCCCCCCCCcc--CCCCcC--CCCCCCCCccccCCCCc--cCCCCC
Q psy14262        344 ELRCGSSNQCVAL---SKFCDGKPDCSNGE--DEGPFCNNKADCE--NLKCSH--KCSPTPRGAMCFCPAGQ--NPNKTQ  412 (482)
Q Consensus       344 ~f~C~~g~~Ci~~---~~~CDg~~dC~dgs--DE~~~C~~~~~C~--~~~C~~--~C~~~~~~~~C~C~~G~--~~~~~~  412 (482)
                      ...|..+..|.+.   .|.|    .|.-|+  |... |...++|.  .+.|.+  .|++.+++|+|.|..||  ..++.+
T Consensus       699 sh~cdt~a~C~pg~~~~~tc----ecs~g~~gdgr~-c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~t  773 (1289)
T KOG1214|consen  699 SHMCDTTARCHPGTGVDYTC----ECSSGYQGDGRN-CVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHT  773 (1289)
T ss_pred             CcccCCCccccCCCCcceEE----EEeeccCCCCCC-CCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcc
Confidence            3344444445443   3444    555553  4445 76444777  566754  89999999999999999  667788


Q ss_pred             ccc------ccccc-CCCCC----CceeeecCC-ceEEecCCCeEECCCCCccccCCCCCCC
Q psy14262        413 CVD------ADECL-IDGSC----DQTCTNTHL-SYVCSCTEGYTLRPDGKSCTAVNVPQDE  462 (482)
Q Consensus       413 C~d------i~eC~-~~~~C----s~~C~n~~g-sy~C~C~~Gy~l~~d~~tC~didec~~~  462 (482)
                      |.-      ++.|. ..+.|    ...|+...| .|.|.|.+||.  .|+..|.++|||+..
T Consensus       774 CV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfs--GDG~~c~dvDeC~ps  833 (1289)
T KOG1214|consen  774 CVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFS--GDGHQCTDVDECSPS  833 (1289)
T ss_pred             eEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCcc--CCccccccccccCcc
Confidence            864      34565 33555    125666654 59999999998  579999999999854

>KOG4260|consensus

Probab=97.17  E-value=0.00082  Score=64.77  Aligned_cols=46  Identities=37%  Similarity=0.733  Sum_probs=31.3

Q ss_pred             cCCCCccCCCCCcccccccc-CCCCC--CceeeecCCceEEecCCCeEE
Q psy14262        401 FCPAGQNPNKTQCVDADECL-IDGSC--DQTCTNTHLSYVCSCTEGYTL  446 (482)
Q Consensus       401 ~C~~G~~~~~~~C~di~eC~-~~~~C--s~~C~n~~gsy~C~C~~Gy~l  446 (482)
                      .|..||..+...|.||+||. .+.+|  .|+|+|+.|||+|.+.+||+.
T Consensus       221 kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~  269 (350)
T KOG4260|consen  221 KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK  269 (350)
T ss_pred             hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence            46777744455677777776 44555  467777777777777777764

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=96.98  E-value=0.00018  Score=48.57  Aligned_cols=30  Identities=40%  Similarity=0.841  Sum_probs=24.8

Q ss_pred             CCCCcCCCCCCCCCccccCCCCc--cCCCCCc
Q psy14262        384 NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQC  413 (482)
Q Consensus       384 ~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C  413 (482)
                      +++|+|.|++++++|+|.|++||  .+++++|
T Consensus         5 NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    5 NGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             GGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred             CCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence            57899999999999999999999  6677765

...

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.78  E-value=0.00079  Score=41.03  Aligned_cols=22  Identities=41%  Similarity=0.939  Sum_probs=19.7

Q ss_pred             CccccCCCCc--cCCCCCcccccc
Q psy14262        397 GAMCFCPAGQ--NPNKTQCVDADE  418 (482)
Q Consensus       397 ~~~C~C~~G~--~~~~~~C~di~e  418 (482)
                      +|+|.|++||  .+++++|.||+|
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            5899999999  578999999986

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=96.20  E-value=0.0039  Score=59.97  Aligned_cols=44  Identities=43%  Similarity=0.872  Sum_probs=38.3

Q ss_pred             CCCCcccccccc-CCCCCCceeeecCCceEEecCCCeEECCCCCc
Q psy14262        409 NKTQCVDADECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKS  452 (482)
Q Consensus       409 ~~~~C~di~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~t  452 (482)
                      .+..|.++++|. .++.|.+.|.+++|+|.|.|++||.|..++++
T Consensus       180 ~~~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~~  224 (224)
T cd01475         180 QGKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT  224 (224)
T ss_pred             ccccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCCC
Confidence            567788899997 56789999999999999999999999877754

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG2397|consensus

Probab=96.13  E-value=0.0055  Score=63.89  Aligned_cols=69  Identities=36%  Similarity=0.649  Sum_probs=60.2

Q ss_pred             CCeecCCCCceecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCC----CeeccCCCCCCCcCCCCCCCCCCC
Q psy14262        168 NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMG----KCIPESWKCDGFVDCLEDGSDEPN  239 (482)
Q Consensus       168 ~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~C~~~~f~C~~g----~Ci~~~~~CDg~~dC~~dgsDE~~  239 (482)
                      ..|+|.++..=|+.+.+=|..-||.||+||..+  ..|+.+.|.|.+.    .=|+.+.+=||+.|| -|||||..
T Consensus        43 ~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGt--sACpngkF~C~N~G~~p~~i~ssrV~DGICDC-CDgSDE~~  115 (480)
T KOG2397|consen   43 SMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGT--SACPNGKFYCVNQGHQPKYIPSSRVNDGICDC-CDGSDEYL  115 (480)
T ss_pred             cceeeccCCcccCHHHhccccccCCCCCCCCcc--ccCCCCceeeeecCCCceeeechhccCccccc-ccCCCCcc
Confidence            479999988889988888999999999999762  4688999999764    678889999999999 99999974

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=95.94  E-value=0.009  Score=40.26  Aligned_cols=35  Identities=51%  Similarity=1.123  Sum_probs=25.7

Q ss_pred             cccccCCCCCCc--eeeecCCceEEecCCCeEECCCCCcc
Q psy14262        416 ADECLIDGSCDQ--TCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       416 i~eC~~~~~Cs~--~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      +++|....+|.+  .|+++.++|.|.|++||.   +++.|
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C   38 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNC   38 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence            566752256754  899999999999999987   35554

>KOG1217|consensus

Probab=95.88  E-value=0.21  Score=52.56  Aligned_cols=116  Identities=28%  Similarity=0.606  Sum_probs=79.8

Q ss_pred             ccccCCCcccCCCCccccc--ccccCCCCCCCCCCCCCCCC---CCCCCcc----CCCCcC--CC--CCCCCCccccCCC
Q psy14262        338 VLCHPNELRCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFC---NNKADCE----NLKCSH--KC--SPTPRGAMCFCPA  404 (482)
Q Consensus       338 ~~C~~~~f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C---~~~~~C~----~~~C~~--~C--~~~~~~~~C~C~~  404 (482)
                      ..|..... |.+++.|+..  .++|    .|+.|..... |   ....+|.    ...|..  .|  ......+.|.|..
T Consensus       272 ~~C~~~~~-c~~~~~C~~~~~~~~C----~C~~g~~g~~-~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~  345 (487)
T KOG1217|consen  272 DSCALIAS-CPNGGTCVNVPGSYRC----TCPPGFTGRL-CTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGP  345 (487)
T ss_pred             cccCCCCc-cCCCCeeecCCCccee----eCCCCCCCCC-CccccccccccccccCCcCCCCcccccCCCCCCCCcCCCC
Confidence            34555444 8777789887  3788    6998887766 4   1112553    333443  45  3344578899999


Q ss_pred             CccCCCCCccccc-cccCC-CCCCceeee-cCCceEEecCCCeEEC--CCCCccccCCCCCC
Q psy14262        405 GQNPNKTQCVDAD-ECLID-GSCDQTCTN-THLSYVCSCTEGYTLR--PDGKSCTAVNVPQD  461 (482)
Q Consensus       405 G~~~~~~~C~di~-eC~~~-~~Cs~~C~n-~~gsy~C~C~~Gy~l~--~d~~tC~didec~~  461 (482)
                      |+  .+..|+... +|... ......|++ +.++|.|.|+.+|.+.  .+...+.++++|..
T Consensus       346 ~~--~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~c~~  405 (487)
T KOG1217|consen  346 GF--TGRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAGKANGDGVGCEDIDECSG  405 (487)
T ss_pred             CC--CCCccccCCccccCCccccCCEeccCCCCCeEecCCCccccCCccccccccccccccC
Confidence            96  778898774 88732 223678999 7999999999999863  57788888888753

>KOG4289|consensus

Probab=95.40  E-value=0.02  Score=66.15  Aligned_cols=88  Identities=25%  Similarity=0.643  Sum_probs=65.5

Q ss_pred             ccccCCCCCCCCCCCCCCCCC-CCCCccCCCCcC--CCCCCCCCccccCCCCccCCCCCcccc---ccccCCCCC--Cce
Q psy14262        357 SKFCDGKPDCSNGEDEGPFCN-NKADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDA---DECLIDGSC--DQT  428 (482)
Q Consensus       357 ~~~CDg~~dC~dgsDE~~~C~-~~~~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~di---~eC~~~~~C--s~~  428 (482)
                      .++|    .|+.|..... |. ..++|-+++|.+  +|....++|+|.|.+||  .+..|+-.   -.|. ++.|  ..+
T Consensus      1221 glrC----rCPpGFTgd~-CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~--tGehCEvs~~agrCv-pGvC~nggt 1292 (2531)
T KOG4289|consen 1221 GLRC----RCPPGFTGDY-CETEIDLCYSGPCGNNGRCRSREGGYTCECRPGF--TGEHCEVSARAGRCV-PGVCKNGGT 1292 (2531)
T ss_pred             ceeE----eCCCCCCccc-ccchhHhhhcCCCCCCCceEEecCceeEEecCCc--cccceeeecccCccc-cceecCCCE
Confidence            4677    8999987776 87 223788889976  89988999999999999  77778532   2243 6788  468


Q ss_pred             eeecC-CceEEecCCCeEECCCCCcccc
Q psy14262        429 CTNTH-LSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       429 C~n~~-gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      |++.+ |+|.|.|+.| .  .....|+-
T Consensus      1293 C~~~~nggf~c~Cp~g-e--~e~prC~v 1317 (2531)
T KOG4289|consen 1293 CVNLLNGGFCCHCPYG-E--FEDPRCEV 1317 (2531)
T ss_pred             EeecCCCceeccCCCc-c--cCCCceEE
Confidence            98875 7799999999 3  23555653

>KOG1217|consensus

Probab=95.27  E-value=0.15  Score=53.78  Aligned_cols=150  Identities=26%  Similarity=0.599  Sum_probs=86.8

Q ss_pred             CCCCCCCCCC--ccccCcccccCCCCccCC--CCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCCCcccCCCCcc
Q psy14262        278 DNTDEDWDKF--HQCFNGQVQCALSKKCIP--HNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQC  353 (482)
Q Consensus       278 dgsDE~~C~~--~~C~~~~f~C~~g~~Ci~--~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~~f~C~~g~~C  353 (482)
                      .+.....+..  ..|......|.+++.|..  ..|.|    .|.     .+.-...   |...           .++..|
T Consensus       158 ~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C----~c~-----~~~~~~~---~~~~-----------~~~~~c  214 (487)
T KOG1217|consen  158 EGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLC----SCP-----PGYTGST---CETT-----------GNGGTC  214 (487)
T ss_pred             CCcccccccccccccccCCCCcCCCcccccCCCCeeE----eCC-----CCccCCc---CcCC-----------CCCceE
Confidence            5555544442  356655556776667773  44667    566     4433333   3211           222344


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCC-CCccCCCCcCCCCCCCCCccccCCCCccCCC-CCccccccccCCCCC--Ccee
Q psy14262        354 VALSKFCDGKPDCSNGEDEGPFCNNK-ADCENLKCSHKCSPTPRGAMCFCPAGQNPNK-TQCVDADECLIDGSC--DQTC  429 (482)
Q Consensus       354 i~~~~~CDg~~dC~dgsDE~~~C~~~-~~C~~~~C~~~C~~~~~~~~C~C~~G~~~~~-~~C~di~eC~~~~~C--s~~C  429 (482)
                      +.. +.|    .+..+..... |... .+|....  .+|.+..++|.|.|++||.... ..|.++++|.....|  .++|
T Consensus       215 ~~~-~~~----~~~~g~~~~~-c~~~~~~~~~~~--~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C  286 (487)
T KOG1217|consen  215 VDS-VAC----SCPPGARGPE-CEVSIVECASGD--GTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTC  286 (487)
T ss_pred             ecc-eec----cCCCCCCCCC-cccccccccCCC--CcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCee
Confidence            443 222    3444443322 3321 1232221  4788888899999999994344 467889999843236  4699


Q ss_pred             eecCCceEEecCCCeEECCCCCccccCCCC
Q psy14262        430 TNTHLSYVCSCTEGYTLRPDGKSCTAVNVP  459 (482)
Q Consensus       430 ~n~~gsy~C~C~~Gy~l~~d~~tC~didec  459 (482)
                      ++..+.|.|.|++||..... ..+.++.+|
T Consensus       287 ~~~~~~~~C~C~~g~~g~~~-~~~~~~~~C  315 (487)
T KOG1217|consen  287 VNVPGSYRCTCPPGFTGRLC-TECVDVDEC  315 (487)
T ss_pred             ecCCCcceeeCCCCCCCCCC-ccccccccc
Confidence            99999999999999986544 334455555

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=95.01  E-value=0.0073  Score=42.16  Aligned_cols=26  Identities=31%  Similarity=0.810  Sum_probs=21.5

Q ss_pred             Ccc--CCCCc--CCCCCCCCCccccCCCCc
Q psy14262        381 DCE--NLKCS--HKCSPTPRGAMCFCPAGQ  406 (482)
Q Consensus       381 ~C~--~~~C~--~~C~~~~~~~~C~C~~G~  406 (482)
                      ||.  .+.|.  ..|+|+.|+|.|.|++||
T Consensus         4 EC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy   33 (42)
T PF07645_consen    4 ECAEGPHNCPENGTCVNTEGSYSCSCPPGY   33 (42)
T ss_dssp             TTTTTSSSSSTTSEEEEETTEEEEEESTTE
T ss_pred             ccCCCCCcCCCCCEEEcCCCCEEeeCCCCc
Confidence            665  34565  489999999999999999

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG4260|consensus

Probab=94.84  E-value=0.06  Score=52.22  Aligned_cols=76  Identities=28%  Similarity=0.621  Sum_probs=56.5

Q ss_pred             CCCCCC--CCCCCCCCCCCcc--CCCCcC--CCCCCCCCccccCCCCccCCCCCcccccccc-CCCCC---CceeeecCC
Q psy14262        365 DCSNGE--DEGPFCNNKADCE--NLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDADECL-IDGSC---DQTCTNTHL  434 (482)
Q Consensus       365 dC~dgs--DE~~~C~~~~~C~--~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~di~eC~-~~~~C---s~~C~n~~g  434 (482)
                      .|..|.  ||.. |...+||.  ..+|.+  .|+|+.++|.|.+.+||..      ++++|. ....|   ...|+|+.+
T Consensus       221 kCkkGW~lde~g-CvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~------g~d~C~~~~d~~~~kn~~c~ni~~  293 (350)
T KOG4260|consen  221 KCKKGWKLDEEG-CVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK------GVDECQFCADVCASKNRPCMNIDG  293 (350)
T ss_pred             hhcccceecccc-cccHHHHhcCCCCCChhheeecCCCceEecccccccC------ChHHhhhhhhhcccCCCCcccCCc
Confidence            455563  7777 88545897  566753  8999999999999999932      256665 22444   357999999


Q ss_pred             ceEEecCCCeEEC
Q psy14262        435 SYVCSCTEGYTLR  447 (482)
Q Consensus       435 sy~C~C~~Gy~l~  447 (482)
                      +|+|.|+.|+...
T Consensus       294 ~~r~v~f~~~~~~  306 (350)
T KOG4260|consen  294 QYRCVCFSGLIII  306 (350)
T ss_pred             cEEEEecccceee
Confidence            9999999998643

>KOG3509|consensus

Probab=94.30  E-value=0.17  Score=57.75  Aligned_cols=104  Identities=29%  Similarity=0.628  Sum_probs=86.0

Q ss_pred             ceecCCCccCccCCCCCCCCCCCCCCCCCC--CccccCcccccCCCCccCCCCCCCCCCCCCCCCCcCCCCCCCcCCcCc
Q psy14262        257 KCIPHNWLCDEEMDCSTDDIVDNTDEDWDK--FHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFS  334 (482)
Q Consensus       257 ~Ci~~~~~CDg~~dC~~~~~~dgsDE~~C~--~~~C~~~~f~C~~g~~Ci~~~~~CDg~~DC~~g~~~dgsDE~~~~~C~  334 (482)
                      .|....+.|++..++.     +.+|+.+..  ...+.+++|.|.++ ++.-..+.+|....+.     +++.+.+   |.
T Consensus         2 ~c~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~---~~   67 (964)
T KOG3509|consen    2 ECVKNRYACDRQPDCR-----DRSDVANDPAIGSACSPNEFKCNNP-RCVQPEALLDADSTCG-----PNSTPSG---CN   67 (964)
T ss_pred             chhhhhhhhccchhhH-----hhcccCCCccccccCCcchhccCCc-cccCchhhhccccccC-----CCCCcCC---cc
Confidence            4666778899999998     999997765  34688899999887 9999999999999999     7776665   43


Q ss_pred             c--CcccccCCCcccCCCCcccccccccCCCCCCCCCCCCCC
Q psy14262        335 H--NAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  374 (482)
Q Consensus       335 ~--~~~~C~~~~f~C~~g~~Ci~~~~~CDg~~dC~dgsDE~~  374 (482)
                      .  .+..|.+..+.|.+-.++...+..|+|..+|.++++|..
T Consensus        68 ~~~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~  109 (964)
T KOG3509|consen   68 AKPSASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEVG  109 (964)
T ss_pred             ccccccccCCcccccccchhcCCccccccCCCCCCccchhcc
Confidence            2  245677888999887678888999999999999999977

>KOG2397|consensus

Probab=93.84  E-value=0.056  Score=56.56  Aligned_cols=68  Identities=43%  Similarity=0.638  Sum_probs=56.2

Q ss_pred             ceecCCC-CeeccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCC---ceecCCCccCccCCCCCCCCCCCCCCCC
Q psy14262        209 QFSCGMG-KCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSK---KCIPHNWLCDEEMDCSTDDIVDNTDEDW  284 (482)
Q Consensus       209 ~f~C~~g-~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g---~Ci~~~~~CDg~~dC~~~~~~dgsDE~~  284 (482)
                      .|.|.+| .=|+.+++-|...|| .||+||..=  ..|..+.|+|.|-|   .=|+.+.+=||+.||-     |||||..
T Consensus        44 ~~~CLdgs~~i~f~qlNDd~CDC-~DGsDEPGt--sACpngkF~C~N~G~~p~~i~ssrV~DGICDCC-----DgSDE~~  115 (480)
T KOG2397|consen   44 MFKCLDGSKTISFSQLNDDSCDC-LDGSDEPGT--SACPNGKFYCVNQGHQPKYIPSSRVNDGICDCC-----DGSDEYL  115 (480)
T ss_pred             ceeeccCCcccCHHHhccccccC-CCCCCCCcc--ccCCCCceeeeecCCCceeeechhccCcccccc-----cCCCCcc
Confidence            5788877 678888899999999 999999752  35888999998543   4688888999999999     9999953

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=93.42  E-value=0.099  Score=34.51  Aligned_cols=30  Identities=53%  Similarity=1.011  Sum_probs=22.6

Q ss_pred             cccccCCCCC--CceeeecCCceEEecCCCeE
Q psy14262        416 ADECLIDGSC--DQTCTNTHLSYVCSCTEGYT  445 (482)
Q Consensus       416 i~eC~~~~~C--s~~C~n~~gsy~C~C~~Gy~  445 (482)
                      +++|....+|  .+.|+++.++|+|.|++||.
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~   33 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYT   33 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence            4556522467  46899999999999999987

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>smart00181 EGF Epidermal growth factor-like domain

Probab=93.42  E-value=0.094  Score=34.45  Aligned_cols=25  Identities=56%  Similarity=1.077  Sum_probs=20.5

Q ss_pred             CCCCc-eeeecCCceEEecCCCeEEC
Q psy14262        423 GSCDQ-TCTNTHLSYVCSCTEGYTLR  447 (482)
Q Consensus       423 ~~Cs~-~C~n~~gsy~C~C~~Gy~l~  447 (482)
                      .+|.+ +|+++.++|.|.|++||.+.
T Consensus         6 ~~C~~~~C~~~~~~~~C~C~~g~~g~   31 (35)
T smart00181        6 GPCSNGTCINTPGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCCCEEECCCCCeEeECCCCCccC
Confidence            46755 89999999999999999753

>KOG4289|consensus

Probab=92.95  E-value=0.087  Score=61.19  Aligned_cols=49  Identities=33%  Similarity=0.880  Sum_probs=40.4

Q ss_pred             CCCCccccCCCCccCCCCCcc-ccccccCCCCC--CceeeecCCceEEecCCCeE
Q psy14262        394 TPRGAMCFCPAGQNPNKTQCV-DADECLIDGSC--DQTCTNTHLSYVCSCTEGYT  445 (482)
Q Consensus       394 ~~~~~~C~C~~G~~~~~~~C~-di~eC~~~~~C--s~~C~n~~gsy~C~C~~Gy~  445 (482)
                      ...+++|.||+||  .+..|+ .+++|- .++|  ...|....|+|.|.|.+||+
T Consensus      1218 pvnglrCrCPpGF--Tgd~CeTeiDlCY-s~pC~nng~C~srEggYtCeCrpg~t 1269 (2531)
T KOG4289|consen 1218 PVNGLRCRCPPGF--TGDYCETEIDLCY-SGPCGNNGRCRSREGGYTCECRPGFT 1269 (2531)
T ss_pred             ccCceeEeCCCCC--CcccccchhHhhh-cCCCCCCCceEEecCceeEEecCCcc
Confidence            4568999999999  445674 578886 5788  46899999999999999997

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=92.94  E-value=0.099  Score=35.24  Aligned_cols=30  Identities=53%  Similarity=1.114  Sum_probs=20.8

Q ss_pred             CCCC--CceeeecCCceEEecCCCeEECCCCCcc
Q psy14262        422 DGSC--DQTCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       422 ~~~C--s~~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      ++.|  ...|++++++|.|+|.+||..  +|..|
T Consensus         5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C   36 (36)
T PF12947_consen    5 NGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC   36 (36)
T ss_dssp             GGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred             CCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence            3556  358999999999999999984  35543

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG3509|consensus

Probab=92.91  E-value=0.098  Score=59.68  Aligned_cols=103  Identities=28%  Similarity=0.593  Sum_probs=87.2

Q ss_pred             ceecCCcccCCCCCCCCCCCCCCCCC---CCCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCcc----cccccCCc
Q psy14262        177 QCVALSKFCDGKPDCSNGEDEGPFCN---AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC----IHQCFNGQ  249 (482)
Q Consensus       177 ~Ci~~~~~CDg~~dC~dgsDE~~~C~---~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~----~~~C~~~~  249 (482)
                      .|....+.|++..|+.+.+|+.+ .+   ..+++++|.|.++++.-..+.+|....+ ..++++.+|.    +..|.+..
T Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~   79 (964)
T KOG3509|consen    2 ECVKNRYACDRQPDCRDRSDVAN-DPAIGSACSPNEFKCNNPRCVQPEALLDADSTC-GPNSTPSGCNAKPSASDCKPTE   79 (964)
T ss_pred             chhhhhhhhccchhhHhhcccCC-CccccccCCcchhccCCccccCchhhhcccccc-CCCCCcCCccccccccccCCcc
Confidence            57778899999999999999987 54   6788999999999999999999999999 8888877763    23467778


Q ss_pred             cccCCCCceecCCCccCccCCCCCCCCCCCCCCCCCC
Q psy14262        250 VQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK  286 (482)
Q Consensus       250 f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE~~C~  286 (482)
                      +.|.+--++.+.+..|+|.++|.     ++++|..+.
T Consensus        80 ~~c~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~  111 (964)
T KOG3509|consen   80 TQCRDRLRCNPQSFQCDGTNDCK-----DGSDEVGCK  111 (964)
T ss_pred             cccccchhcCCccccccCCCCCC-----ccchhcccc
Confidence            88984447888999999999999     999886553

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=91.45  E-value=0.16  Score=33.89  Aligned_cols=32  Identities=28%  Similarity=0.789  Sum_probs=23.9

Q ss_pred             CccC-CCCcC--CCCCCCCCccccCCCCccCCCCCc
Q psy14262        381 DCEN-LKCSH--KCSPTPRGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       381 ~C~~-~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C  413 (482)
                      +|.. .+|.+  +|+++.++|.|.|++||. .+..|
T Consensus         4 ~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~-~g~~C   38 (39)
T smart00179        4 ECASGNPCQNGGTCVNTVGSYRCECPPGYT-DGRNC   38 (39)
T ss_pred             cCcCCCCcCCCCEeECCCCCeEeECCCCCc-cCCcC
Confidence            5554 56665  799999999999999994 35544

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=89.25  E-value=0.46  Score=30.59  Aligned_cols=24  Identities=50%  Similarity=0.953  Sum_probs=19.0

Q ss_pred             CCCC--ceeeecCCceEEecCCCeEE
Q psy14262        423 GSCD--QTCTNTHLSYVCSCTEGYTL  446 (482)
Q Consensus       423 ~~Cs--~~C~n~~gsy~C~C~~Gy~l  446 (482)
                      ..|.  ++|+++.++|+|.|+.||..
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~g~~g   31 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPPGYTG   31 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCCCCcc
Confidence            4553  68888888999999999874

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=89.23  E-value=0.087  Score=35.51  Aligned_cols=25  Identities=24%  Similarity=0.553  Sum_probs=18.6

Q ss_pred             CCCCCCCCCccccCCCCccCCCCCc
Q psy14262        389 HKCSPTPRGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       389 ~~C~~~~~~~~C~C~~G~~~~~~~C  413 (482)
                      +.|.+++++|.|.|++||..++..|
T Consensus        12 A~C~~~~~~~~C~C~~Gy~GdG~~C   36 (36)
T PF12947_consen   12 ATCTNTGGSYTCTCKPGYEGDGFFC   36 (36)
T ss_dssp             CEEEE-TTSEEEEE-CEEECCSTCE
T ss_pred             cEeecCCCCEEeECCCCCccCCcCC
Confidence            3788889999999999996666554

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=88.69  E-value=0.34  Score=31.71  Aligned_cols=22  Identities=41%  Similarity=0.886  Sum_probs=18.9

Q ss_pred             CCCcC-CCCCCCCCccccCCCCc
Q psy14262        385 LKCSH-KCSPTPRGAMCFCPAGQ  406 (482)
Q Consensus       385 ~~C~~-~C~~~~~~~~C~C~~G~  406 (482)
                      .+|.+ +|+++.++|.|.|++||
T Consensus         6 ~~C~~~~C~~~~~~~~C~C~~g~   28 (35)
T smart00181        6 GPCSNGTCINTPGSYTCSCPPGY   28 (35)
T ss_pred             CCCCCCEEECCCCCeEeECCCCC
Confidence            45666 79888999999999999

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=84.59  E-value=1  Score=29.29  Aligned_cols=23  Identities=39%  Similarity=0.998  Sum_probs=19.2

Q ss_pred             CCCC--ceeeecC-CceEEecCCCeE
Q psy14262        423 GSCD--QTCTNTH-LSYVCSCTEGYT  445 (482)
Q Consensus       423 ~~Cs--~~C~n~~-gsy~C~C~~Gy~  445 (482)
                      .+|.  .+|++.. ++|.|.|++||+
T Consensus         4 ~~C~n~g~C~~~~~~~y~C~C~~G~~   29 (32)
T PF00008_consen    4 NPCQNGGTCIDLPGGGYTCECPPGYT   29 (32)
T ss_dssp             TSSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred             CcCCCCeEEEeCCCCCEEeECCCCCc
Confidence            3664  4899998 899999999997

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=84.16  E-value=0.23  Score=32.44  Aligned_cols=23  Identities=35%  Similarity=0.873  Sum_probs=18.4

Q ss_pred             CCCCcC--CCCCCC-CCccccCCCCc
Q psy14262        384 NLKCSH--KCSPTP-RGAMCFCPAGQ  406 (482)
Q Consensus       384 ~~~C~~--~C~~~~-~~~~C~C~~G~  406 (482)
                      ..+|++  +|++.. .+|+|.|++||
T Consensus         3 ~~~C~n~g~C~~~~~~~y~C~C~~G~   28 (32)
T PF00008_consen    3 SNPCQNGGTCIDLPGGGYTCECPPGY   28 (32)
T ss_dssp             TTSSTTTEEEEEESTSEEEEEEBTTE
T ss_pred             CCcCCCCeEEEeCCCCCEEeECCCCC
Confidence            345655  788777 89999999999

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=81.98  E-value=1.2  Score=29.10  Aligned_cols=26  Identities=31%  Similarity=0.778  Sum_probs=19.8

Q ss_pred             CccC-CCCc--CCCCCCCCCccccCCCCc
Q psy14262        381 DCEN-LKCS--HKCSPTPRGAMCFCPAGQ  406 (482)
Q Consensus       381 ~C~~-~~C~--~~C~~~~~~~~C~C~~G~  406 (482)
                      +|.. .+|.  ..|.+..++|.|.|++||
T Consensus         4 ~C~~~~~C~~~~~C~~~~~~~~C~C~~g~   32 (38)
T cd00054           4 ECASGNPCQNGGTCVNTVGSYRCSCPPGY   32 (38)
T ss_pred             cCCCCCCcCCCCEeECCCCCeEeECCCCC
Confidence            4443 4564  378888999999999999

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=81.26  E-value=1.3  Score=28.41  Aligned_cols=18  Identities=39%  Similarity=0.922  Sum_probs=16.0

Q ss_pred             CCCCCCCCCccccCCCCc
Q psy14262        389 HKCSPTPRGAMCFCPAGQ  406 (482)
Q Consensus       389 ~~C~~~~~~~~C~C~~G~  406 (482)
                      .+|++..++|.|.|+.||
T Consensus        12 ~~C~~~~~~~~C~C~~g~   29 (36)
T cd00053          12 GTCVNTPGSYRCVCPPGY   29 (36)
T ss_pred             CEEecCCCCeEeECCCCC
Confidence            478888889999999999

>KOG1225|consensus

Probab=80.21  E-value=7  Score=42.31  Aligned_cols=72  Identities=25%  Similarity=0.495  Sum_probs=38.4

Q ss_pred             eecCCCCeeccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCCceecCCCccCccCCCCCCCCCCCCCCCCCCCcc
Q psy14262        210 FSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQ  289 (482)
Q Consensus       210 f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE~~C~~~~  289 (482)
                      ++|..|+||           | ..|+...+|....|...   |.+++.+++      |+-.|.     ++.-...|....
T Consensus       260 g~c~~G~CI-----------C-~~Gf~G~dC~e~~Cp~~---cs~~g~~~~------g~CiC~-----~g~~G~dCs~~~  313 (525)
T KOG1225|consen  260 GQCVEGRCI-----------C-PPGFTGDDCDELVCPVD---CSGGGVCVD------GECICN-----PGYSGKDCSIRR  313 (525)
T ss_pred             ceEeCCeEe-----------C-CCCCcCCCCCcccCCcc---cCCCceecC------CEeecC-----CCcccccccccc
Confidence            566666666           3 55555555543334332   332344443      223376     666666676555


Q ss_pred             ccCcccccCCCCccCCCCCCC
Q psy14262        290 CFNGQVQCALSKKCIPHNWLC  310 (482)
Q Consensus       290 C~~~~f~C~~g~~Ci~~~~~C  310 (482)
                      |..   .|..+++||+..-+|
T Consensus       314 cpa---dC~g~G~Ci~G~C~C  331 (525)
T KOG1225|consen  314 CPA---DCSGHGKCIDGECLC  331 (525)
T ss_pred             CCc---cCCCCCcccCCceEe
Confidence            653   477777888544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	482
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		1e-28
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		1e-28
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		1e-12
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		2e-09
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		8e-09
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		7e-08
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		7e-08
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		7e-08
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		7e-08
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		3e-07
1hz8_A	82	Solution Structure And Backbone Dynamics Of A Conca		3e-07
1f5y_A	85	Nmr Structure Of A Concatemer Of The First And Seco		4e-07
1f5y_A	85	Nmr Structure Of A Concatemer Of The First And Seco		1e-05
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		8e-07
2fyj_A	82	Nmr Solution Structure Of Calcium-Loaded Lrp Double		1e-06
2w2m_E	107	Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length =		3e-06
1hj7_A	80	Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Ep		3e-06
3bps_E	83	Pcsk9:egf-a Complex Length = 83		4e-06
2fcw_B	80	Structure Of A Complex Between The Pair Of The Ldl		1e-05
2fcw_B	80	Structure Of A Complex Between The Pair Of The Ldl		4e-05
2w2n_E	107	Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr		1e-05
3gcw_E	83	Pcsk9:egfa(H306y) Length = 83		1e-05
2lgp_A	94	Solution Structure Of La45 From Ldlr Length = 94		4e-05
1d2l_A	45	Nmr Solution Structure Of Complement-Like Repeat Cr		1e-04

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 149/332 (44%), Gaps = 37/332 (11%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C  +E RC    +C++    CD   DC +G DE       C P  F C    CIP+ W C
Sbjct: 106 CSQDEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 164
Query: 225 DGFVDCLEDGSDE-PNTC----IHQ-----CFNGQVQCALSKKCIPHNWLCDEEMDCSTD 274
           D   DC EDGSDE P  C    + Q     C   +  C LS +CI  +W CD   DC   
Sbjct: 165 DNDPDC-EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC-LSGECIHSSWRCDGGPDCK-- 220
Query: 275 DIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFS 334
              D +DE+      C   + QC+    CI  +  CD E DC      D +DE       
Sbjct: 221 ---DKSDEENCAVATCRPDEFQCS-DGNCIHGSRQCDREYDCK-----DMSDE----VGC 267
Query: 335 HNAVLCH-PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC--ENLKCSHKC 391
            N  LC  PN+ +C  S +C+ L K C+   DC +  DE        +C   N  CSH C
Sbjct: 268 VNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVC 326
Query: 392 SPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDG 450
           +    G  C CP G Q   + +C D DEC    +C Q C N    Y C C EG+ L P  
Sbjct: 327 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHT 386
Query: 451 KSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
           K+C AV       A + F++  ++R++ L+ S
Sbjct: 387 KACKAVG----SIAYLFFTNRHEVRKMTLDRS 414

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 149/332 (44%), Gaps = 37/332 (11%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C  +E RC    +C++    CD   DC +G DE       C P  F C    CIP+ W C
Sbjct: 88  CSQDEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 146
Query: 225 DGFVDCLEDGSDE-PNTC----IHQ-----CFNGQVQCALSKKCIPHNWLCDEEMDCSTD 274
           D   DC EDGSDE P  C    + Q     C   +  C LS +CI  +W CD   DC   
Sbjct: 147 DNDPDC-EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC-LSGECIHSSWRCDGGPDCK-- 202
Query: 275 DIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFS 334
              D +DE+      C   + QC+    CI  +  CD E DC      D +DE       
Sbjct: 203 ---DKSDEENCAVATCRPDEFQCS-DGNCIHGSRQCDREYDCK-----DMSDE----VGC 249
Query: 335 HNAVLCH-PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC--ENLKCSHKC 391
            N  LC  PN+ +C  S +C+ L K C+   DC +  DE        +C   N  CSH C
Sbjct: 250 VNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVC 308
Query: 392 SPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDG 450
           +    G  C CP G Q   + +C D DEC    +C Q C N    Y C C EG+ L P  
Sbjct: 309 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHT 368
Query: 451 KSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
           K+C AV       A + F++  ++R++ L+ S
Sbjct: 369 KACKAVG----SIAYLFFTNRHEVRKMTLDRS 396

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 342 PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC--ENLKCSHKCSPTPRGAM 399
           PN+ +C  S +C+ L K C+   DC +  DE        +C   N  CSH C+    G  
Sbjct: 4   PNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 62
Query: 400 CFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV 458
           C CP G Q   + +C D DEC    +C Q C N    Y C C EG+ L P  K+C AV  
Sbjct: 63  CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG- 121
Query: 459 PQDEPASIIFSSTVDIRRIHLNGS 482
                A + F++  ++R++ L+ S
Sbjct: 122 ---SIAYLFFTNRHEVRKMTLDRS 142

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 381 DCENLKCSHKCSPTPRGAMCFCPAGQNPNK--TQCVDADECLIDGSCDQTCTNTHLSYVC 438
           +  N  C+ KC        C C  G    +    C D +EC  +G C Q CTN+  ++ C
Sbjct: 7   NVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQC 66
Query: 439 SCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRI 477
            C  GY LRPD +SC A+     EP  ++F++ +DIR++
Sbjct: 67  WCEAGYELRPDRRSCKALG---PEPV-LLFANRIDIRQV 101

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
           N  CSH C+    G  C CP G Q   + +C D DEC    +C Q C N    Y C C E
Sbjct: 7   NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 66
Query: 443 GYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
           G+ L P  K+C AV       A + F++  ++R++ L+ S
Sbjct: 67  GFQLDPHTKACKAVG----SIAYLFFTNRHEVRKMTLDRS 102

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++E+AGM G +R  ++   I WP+ L +DY +  LYW D+ LN +    +DG++   +  
Sbjct: 146 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 205
Query: 167 PNELRCGSSNQCVALSKFCD 186
                 GS     AL+ F D
Sbjct: 206 ------GSLPHPFALTLFED 219

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++E+AGM G +R  ++   I WP+ L +DY +  LYW D+ LN +    +DG++   +  
Sbjct: 143 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 202
Query: 167 PNELRCGSSNQCVALSKFCD 186
                 GS     AL+ F D
Sbjct: 203 ------GSLPHPFALTLFED 216

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++E+AGM G +R  ++   I WP+ L +DY +  LYW D+ LN +    +DG++   +  
Sbjct: 143 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 202
Query: 167 PNELRCGSSNQCVALSKFCD 186
                 GS     AL+ F D
Sbjct: 203 ------GSLPHPFALTLFED 216

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++E+AGM G +R  ++   I WP+ L +DY +  LYW D+ LN +    +DG++   +  
Sbjct: 151 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 210
Query: 167 PNELRCGSSNQCVALSKFCD 186
                 GS     AL+ F D
Sbjct: 211 ------GSLPHPFALTLFED 224

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 94  WDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 153
           W  PA        +++K G++G +   LVT+NIQWP+ + +D     LYW DS L+++ S
Sbjct: 139 WGTPA--------KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190
Query: 154 VRVDGSHNAV-------LCHPNEL 170
           + V+G +          L HP  L
Sbjct: 191 IDVNGGNRKTILEDEKRLAHPFSL 214

>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of Egf-Homology Modules Of The Human Low Density Lipoprotein Receptor Length = 82

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
           N  CSH C+    G  C CP G Q   + +C D DEC    +C Q C N    Y C C E
Sbjct: 9   NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 68
Query: 443 GYTLRPDGKSCTAV 456
           G+ L P  K+C AV
Sbjct: 69  GFQLDPHTKACKAV 82

>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEG--PFCNAECTPGQFSCG--MGKCIPE 220
           C  NE +C    +C++    CDG  +C +G DE      +  C  G FSCG  + +CIP+
Sbjct: 8   CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 66
Query: 221 SWKCDGFVDCLEDGSDEPN 239
            W+CDG VDC ++GSDE  
Sbjct: 67  FWRCDGQVDC-DNGSDEQG 84

>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIH-QCFNGQVQC-ALSKKCIP 260
            C   +F C  GKCI   W CDG  +C +DGSDE   TC+   C +G   C     +CIP
Sbjct: 7   RCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 65
Query: 261 HNWLCDEEMDC 271
             W CD ++DC
Sbjct: 66  QFWRCDGQVDC 76

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 416 ADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIR 475
            +EC  +G C Q CTN+  ++ C C  GY LRPD +SC A+     EP  ++F++ +DIR
Sbjct: 1   VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG---PEPV-LLFANRIDIR 56
Query: 476 RI 477
           ++
Sbjct: 57  QV 58

>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module Length = 82

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIH-QCFNGQVQCALSKKCIPHNW 263
           C P QFSC  G+CIP SW CD   DC  D SDE  +C +  CF        + +CI  NW
Sbjct: 5   CPPNQFSCASGRCIPISWTCDLDDDC-GDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Query: 264 LCDEEMDCSTDDIVDNTDE 282
            CD + DC      DN+DE
Sbjct: 64  RCDNDNDCG-----DNSDE 77

>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
           N  CSH C+    G  C CP G Q   + +C D DEC    +C Q C N    Y C C E
Sbjct: 36  NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 95
Query: 443 GYTLRPDGKSC 453
           G+ L P  K+C
Sbjct: 96  GFQLDPHTKAC 106

>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal Growth Factor-Like Domains, 20 Structures Length = 80

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
           N  CSH C+    G  C CP G Q   + +C D DEC    +C Q C N    Y C C E
Sbjct: 9   NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 68
Query: 443 GYTLRPDGKSC 453
           G+ L P  K+C
Sbjct: 69  GFQLDPHTKAC 79

>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex Length = 83

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
           N  CSH C+    G  C CP G Q   + +C D DEC    +C Q C N    Y C C E
Sbjct: 12  NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 71
Query: 443 GYTLRPDGKSC 453
           G+ L P  K+C
Sbjct: 72  GFQLDPHTKAC 82

>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C   E RC    +C++    CD   DC +G DE       C P  F C    CIP+ W C
Sbjct: 3   CSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 225 DGFVDCLEDGSDE-PNTC 241
           D   DC EDGSDE P  C
Sbjct: 62  DNDPDC-EDGSDEWPQRC 78

>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWL 264
           C+  +F C  GKCI   + CD   DCL DGSDE +  +  C     QC  S  CIP  W 
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCL-DGSDEASCPVLTCGPASFQCN-SSTCIPQLWA 60
Query: 265 CDEEMDC 271
           CD + DC
Sbjct: 61  CDNDPDC 67

>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
           N  CS+ C+    G  C CP G Q   + +C D DEC    +C Q C N    Y C C E
Sbjct: 36  NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 95
Query: 443 GYTLRPDGKSC 453
           G+ L P  K+C
Sbjct: 96  GFQLDPHTKAC 106

>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y) Length = 83

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
           N  CS+ C+    G  C CP G Q   + +C D DEC    +C Q C N    Y C C E
Sbjct: 12  NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 71
Query: 443 GYTLRPDGKSC 453
           G+ L P  K+C
Sbjct: 72  GFQLDPHTKAC 82

>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr Length = 94

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 162 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP-FC---------NAECTPGQFS 211
            + C P   +C SS  C+     CD  PDC +G DE P  C         ++ C+  +F 
Sbjct: 4   VLTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 62
Query: 212 CGMGKCIPESWKCDGFVDCLEDGSDEPNTCI 242
           C  G+CI  SW+CDG  DC +D SDE N  +
Sbjct: 63  CLSGECIHSSWRCDGGPDC-KDKSDEENCAV 92

>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From The Low Density Lipoprotein Receptor-Related Protein (Lrp) . Evidence For Specific Binding To The Receptor Binding Domain Of Human Alpha-2 Macroglobulin Length = 45

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC 241
           +C PG+F+C   +CI E WKCDG  DCL++  + P  C
Sbjct: 5   QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALC 42

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	482
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	5e-37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	6e-28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-22
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	8e-08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-29
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-23
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-18
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-06
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	1e-17
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	1e-16
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	2e-10
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	1e-16
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-08
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	7e-16
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-15
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-09
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	5e-04
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	3e-14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	5e-10
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	3e-06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	6e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	5e-04
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	5e-14
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	2e-07
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	3e-10
2xrc_A	565	Human complement factor I; immune system, hydrolas	2e-12
2xrc_A	565	Human complement factor I; immune system, hydrolas	2e-05
3v65_B	386	Low-density lipoprotein receptor-related protein;	3e-12
3v65_B	386	Low-density lipoprotein receptor-related protein;	5e-10
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-05
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	8e-12
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	2e-11
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	4e-11
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	3e-05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	6e-05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	9e-04
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	2e-10
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	3e-06
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	9e-10
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	8e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-09
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	5e-09
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	7e-09
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	1e-09
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-09
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	5e-04
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	3e-09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	3e-07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-04
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	7e-09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	6e-08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	8e-08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-04
3a7q_B	44	Low-density lipoprotein receptor-related protein;	2e-08
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	2e-08
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	2e-07
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	1e-04
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	8e-04
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	4e-08
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	2e-05
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	6e-04
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	6e-08
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	7e-08
1aut_L	114	Activated protein C; serine proteinase, plasma cal	8e-08
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	1e-07
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	3e-05
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	3e-05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	3e-07
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	6e-04
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	6e-04
1cr8_A	42	Protein (LOW density lipoprotein receptor related	3e-07
1cr8_A	42	Protein (LOW density lipoprotein receptor related	2e-05
1cr8_A	42	Protein (LOW density lipoprotein receptor related	2e-05
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	4e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	4e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	9e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	5e-05
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	4e-07
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	5e-07
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-05
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	5e-05
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	5e-07
2bou_A	143	EGF-like module containing mucin-like hormone rece	6e-07
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	2e-06
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	3e-06
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	2e-05
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	2e-05
2wph_E	59	Coagulation factor IXA light chain; serine proteas	9e-06
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	1e-05
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	3e-05
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-05
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	2e-05
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	3e-05
1nzi_A	159	Complement C1S component; calcium, innate immunity	4e-05
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	6e-05
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	7e-05
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-04
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	2e-04
1szb_A	170	Mannose binding lectin-associated serine protease-	7e-04

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  143 bits (362), Expect = 5e-37
 Identities = 99/304 (32%), Positives = 129/304 (42%), Gaps = 31/304 (10%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C  +E RC    +C++    CD   DC +G DE       C P  F C    CIP+ W C
Sbjct: 88  CSQDEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 146

Query: 225 DGFVDCLEDGSDEPN----------TCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTD 274
           D   DC EDGSDE                 C   +  C  S +CI  +W CD   DC   
Sbjct: 147 DNDPDC-EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL-SGECIHSSWRCDGGPDCK-- 202

Query: 275 DIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFS 334
              D +DE+      C   + QC+    CI  +  CD E DC      D +DE       
Sbjct: 203 ---DKSDEENCAVATCRPDEFQCS-DGNCIHGSRQCDREYDCK-----DMSDEV---GCV 250

Query: 335 HNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NNKADCENLKCSHKCS 392
           +  +   PN+ +C  S +C+ L K C+   DC +  DE       N+    N  CSH C+
Sbjct: 251 NVTLCEGPNKFKCH-SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCN 309

Query: 393 PTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGK 451
               G  C CP G Q   + +C D DEC    +C Q C N    Y C C EG+ L P  K
Sbjct: 310 DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK 369

Query: 452 SCTA 455
           +C A
Sbjct: 370 ACKA 373

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  116 bits (292), Expect = 6e-28
 Identities = 88/332 (26%), Positives = 125/332 (37%), Gaps = 62/332 (18%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NAECTPGQFSCG--MGKCIPE 220
           C  NE +C    +C++    CDG  +C +G DE      +  C  G FSCG  + +CIP+
Sbjct: 6   CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 64

Query: 221 SWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
            W+CDG VDC ++GSDE       C   + +C    KCI   ++CD + DC      D +
Sbjct: 65  FWRCDGQVDC-DNGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCL-----DGS 117

Query: 281 DEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW--DKYFSHNAV 338
           DE       C     QC  S  CIP  W CD + DC   D  D   +       F  ++ 
Sbjct: 118 DEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCE--DGSDEWPQRCRGLYVFQGDSS 174

Query: 339 LCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP-----------------------F 375
            C   E  C  S +C+  S  CDG PDC +  DE                          
Sbjct: 175 PCSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQ 233

Query: 376 CNNKADC------ENLKCSHKCSPT-----------PRGAMC----FCPAGQNPNKTQCV 414
           C+ + DC              C                  +C     C    +    +C 
Sbjct: 234 CDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECG 293

Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTL 446
             +    +G C   C +  + Y C C +G+ L
Sbjct: 294 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQL 325

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  100 bits (249), Expect = 1e-22
 Identities = 65/234 (27%), Positives = 93/234 (39%), Gaps = 26/234 (11%)

Query: 202 NAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC--IHQCFNGQVQCA-LSKKC 258
              C   +F C  GKCI   W CDG  +C +DGSDE         C +G   C     +C
Sbjct: 3   GDRCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCLSVTCKSGDFSCGGRVNRC 61

Query: 259 IPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCST 318
           IP  W CD ++DC      + +DE       C   + +C    KCI   ++CD + DC  
Sbjct: 62  IPQFWRCDGQVDCD-----NGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCL- 114

Query: 319 DDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNN 378
               D +DE      +     C P   +C +S+ C+     CD  PDC +G DE P    
Sbjct: 115 ----DGSDEASCPVLT-----CGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWP-QRC 163

Query: 379 KADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNT 432
           +        S  CS         C +G+  + +   D      D S ++ C   
Sbjct: 164 RGLYVFQGDSSPCSAF----EFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVA 213

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 83.7 bits (206), Expect = 3e-17
 Identities = 49/227 (21%), Positives = 73/227 (32%), Gaps = 12/227 (5%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C   E  C  S +C+  S  CDG PDC +  DE     A C P +F C  G CI  S +C
Sbjct: 176 CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 234

Query: 225 DGFVDCLEDGSDEPN--TCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 282
           D   DC +D SDE             + +C  S +CI  + +C+   DC      D +DE
Sbjct: 235 DREYDC-KDMSDEVGCVNVTLCEGPNKFKCH-SGECITLDKVCNMARDCR-----DWSDE 287

Query: 283 DWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHP 342
              +             S  C  ++     E  C     +       D     +   C  
Sbjct: 288 PIKECGTNECLDNNGGCSHVC--NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 345

Query: 343 NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSH 389
             +      +C     F       +             +   ++   
Sbjct: 346 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 392

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 21/63 (33%), Positives = 39/63 (61%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           +++K G++G +   LVT+NIQWP+ + +D     LYW DS L+++ S+ V+G +   +  
Sbjct: 520 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 579

Query: 167 PNE 169
             +
Sbjct: 580 DEK 582

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  136 bits (343), Expect = 2e-34
 Identities = 101/341 (29%), Positives = 129/341 (37%), Gaps = 64/341 (18%)

Query: 165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWK 223
           C   +  CG   N+C+     CDG+ DC NG DE       C+  +F C  GKCI   + 
Sbjct: 65  CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFV 124

Query: 224 CDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCS-----TDDIVD 278
           CD   DCL DGSDE +  +  C     QC  S  CIP  W CD + DC            
Sbjct: 125 CDSDRDCL-DGSDEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCR 182

Query: 279 NTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAV 338
                      C   +  C  S +CI  +W CD   DC      D +DE+     +    
Sbjct: 183 GLYVFQGDSSPCSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDEE-----NCAVA 231

Query: 339 LCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP------------------------ 374
            C P+E +C     C+  S+ CD + DC +  DE                          
Sbjct: 232 TCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD 290

Query: 375 -FCNNKADCE------------------NLKCSHKCSPTPRGAMCFCPAGQN-PNKTQCV 414
             CN   DC                   N  CSH C+    G  C CP G     + +C 
Sbjct: 291 KVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 350

Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
           D DEC    +C Q C N    Y C C EG+ L P  K+C A
Sbjct: 351 DIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 391

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  120 bits (302), Expect = 3e-29
 Identities = 90/342 (26%), Positives = 129/342 (37%), Gaps = 68/342 (19%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NAECTPGQFSCG--MGKCIPE 220
           C  NE +C    +C++    CDG  +C +G DE      +  C  G FSCG  + +CIP+
Sbjct: 24  CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 82

Query: 221 SWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
            W+CDG VDC ++GSDE       C   + +C    KCI   ++CD + DC      D +
Sbjct: 83  FWRCDGQVDC-DNGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCL-----DGS 135

Query: 281 DEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKY-----FSH 335
           DE       C     QC  S  CIP  W CD + DC      D +DE   +      F  
Sbjct: 136 DEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDC-----EDGSDEWPQRCRGLYVFQG 189

Query: 336 NAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP--------------------- 374
           ++  C   E  C  S +C+  S  CDG PDC +  DE                       
Sbjct: 190 DSSPCSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHG 248

Query: 375 --FCNNKADC-----ENLKCSHKCSPTPRGAMCF----------------CPAGQNPNKT 411
              C+ + DC     E    +      P    C                 C    +    
Sbjct: 249 SRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 308

Query: 412 QCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
           +C   +    +G C   C +  + Y C C +G+ L    +  
Sbjct: 309 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 350

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  101 bits (252), Expect = 6e-23
 Identities = 66/252 (26%), Positives = 95/252 (37%), Gaps = 29/252 (11%)

Query: 185 CDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC--I 242
                  +            C   +F C  GKCI   W CDG  +C +DGSDE       
Sbjct: 7   WTVALLLAAAGTA---VGDRCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCLS 62

Query: 243 HQCFNGQVQCA-LSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSK 301
             C +G   C     +CIP  W CD ++DC      + +DE       C   + +C    
Sbjct: 63  VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD-----NGSDEQGCPPKTCSQDEFRCH-DG 116

Query: 302 KCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCD 361
           KCI   ++CD + DC      D +DE      S   + C P   +C +S+ C+     CD
Sbjct: 117 KCISRQFVCDSDRDCL-----DGSDEA-----SCPVLTCGPASFQC-NSSTCIPQLWACD 165

Query: 362 GKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLI 421
             PDC +G DE P    +        S  CS         C +G+  + +   D      
Sbjct: 166 NDPDCEDGSDEWP-QRCRGLYVFQGDSSPCSAF----EFHCLSGECIHSSWRCDGGPDCK 220

Query: 422 DGSCDQTCTNTH 433
           D S ++ C    
Sbjct: 221 DKSDEENCAVAT 232

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 86.8 bits (214), Expect = 3e-18
 Identities = 49/227 (21%), Positives = 73/227 (32%), Gaps = 12/227 (5%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C   E  C S  +C+  S  CDG PDC +  DE     A C P +F C  G CI  S +C
Sbjct: 194 CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 252

Query: 225 DGFVDCLEDGSDEPNTCIHQ--CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 282
           D   DC +D SDE             + +C  S +CI  + +C+   DC      D +DE
Sbjct: 253 DREYDC-KDMSDEVGCVNVTLCEGPNKFKCH-SGECITLDKVCNMARDCR-----DWSDE 305

Query: 283 DWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHP 342
              +             S  C  ++     E  C     +       D     +   C  
Sbjct: 306 PIKECGTNECLDNNGGCSHVC--NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 363

Query: 343 NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSH 389
             +      +C     F       +             +   ++   
Sbjct: 364 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 21/54 (38%), Positives = 37/54 (68%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSH 160
           +++K G++G +   LVT+NIQWP+ + +D     LYW DS L+++ S+ V+G +
Sbjct: 538 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 19/184 (10%)

Query: 157 DGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPF---------------- 200
            G  N  LC         S +C+ L K C+   DC +  DE                   
Sbjct: 265 VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSH 324

Query: 201 -CNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCI 259
            CN      +  C  G  +    +C+   +C +D       C++     + QC      +
Sbjct: 325 VCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGGYKCQCE-EGFQL 382

Query: 260 PHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTD 319
             +    + +         N  E                  +  +  +          +D
Sbjct: 383 DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 442

Query: 320 DIVD 323
               
Sbjct: 443 LSQR 446

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C   E RC    +C++    CD   DC +G DE       C P  F C    CIP+ W C
Sbjct: 3   CSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61

Query: 225 DGFVDCLEDGSDEPN 239
           D   DC EDGSDE  
Sbjct: 62  DNDPDC-EDGSDEWP 75

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNW 263
            C+  +F C  GKCI   + CD   DC  DGSDE +  +  C     QC  S  CIP  W
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDC-LDGSDEASCPVLTCGPASFQCN-SSTCIPQLW 59

Query: 264 LCDEEMDCSTDDIVDNTDED 283
            CD + DC      D +DE 
Sbjct: 60  ACDNDPDCE-----DGSDEW 74

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 290 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGS 349
           C   + +C    KCI   ++CD + DC      D +DE      S   + C P   +C +
Sbjct: 3   CSQAEFRCH-DGKCISRQFVCDSDRDCL-----DGSDEA-----SCPVLTCGPASFQC-N 50

Query: 350 SNQCVALSKFCDGKPDCSNGEDE 372
           S+ C+     CD  PDC +G DE
Sbjct: 51  SSTCIPQLWACDNDPDCEDGSDE 73

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 364 PDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLID 422
           P   N   +G    N+    N  CS+ C+    G  C CP G Q   + +C D DEC   
Sbjct: 16  PTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDP 75

Query: 423 GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
            +C Q C N    Y C C EG+ L P  K+C
Sbjct: 76  DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 389 HKCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLSYVCSCTEGYTLR 447
           H                        +  +ECL + G C   C +  + Y C C +G+ L 
Sbjct: 4   HHHHHPMSDYDIPTTENLYFQG--AMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61

Query: 448 PDGKSCTAVN 457
                C  ++
Sbjct: 62  AQR-RCEDID 70

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NAECTPGQFSCGMGKCIPESW 222
           C PN+  C S  +C+ +S  CD   DC +  DE   C         QF+C  G+CI  +W
Sbjct: 5   CPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63

Query: 223 KCDGFVDCLEDGSDEPN 239
           +CD   DC  D SDE  
Sbjct: 64  RCDNDNDC-GDNSDEAG 79

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 35/81 (43%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQ--CFNGQVQCALSKKCIPH 261
            C P QFSC  G+CIP SW CD   DC  D SDE  +C +       Q  C  + +CI  
Sbjct: 4   TCPPNQFSCASGRCIPISWTCDLDDDC-GDRSDESASCAYPTCFPLTQFTCN-NGRCINI 61

Query: 262 NWLCDEEMDCSTDDIVDNTDE 282
           NW CD + DC      DN+DE
Sbjct: 62  NWRCDNDNDCG-----DNSDE 77

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRC 347
             C   Q  CA S +CIP +W CD + DC      D +DE     +          +  C
Sbjct: 3   RTCPPNQFSCA-SGRCIPISWTCDLDDDCG-----DRSDESASCAYPTC---FPLTQFTC 53

Query: 348 GSSNQCVALSKFCDGKPDCSNGEDE 372
            +  +C+ ++  CD   DC +  DE
Sbjct: 54  NNG-RCININWRCDNDNDCGDNSDE 77

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCEN 384
           C PN+  C S  +C+ +S  CD   DC +  DE   C        
Sbjct: 5   CPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPL 48

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 71.8 bits (176), Expect = 3e-14
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++E + M G NR  L   N+  P+ L  D     L W D+  +  E +         +  
Sbjct: 147 KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 105 DERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
           +  + +A +HG   + ++ +++  P  + +D+    ++W DS L+ +E  ++DG+   VL
Sbjct: 57  EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNT--VESVRVDGSHNAVL 164
           R+E A M G  R  L    +  P  +V D  +  LYW D + +   +E+  +DG++  +L
Sbjct: 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 9/57 (15%), Positives = 18/57 (31%)

Query: 108 LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
           LE+  M        +    +    L  D    ++YW D    ++    + G     +
Sbjct: 17  LERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI 73

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           R E        R  ++   +Q+P ++        LY+ D   N+V ++ +  S      H
Sbjct: 190 RAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246

Query: 167 P 167
           P
Sbjct: 247 P 247

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 66.5 bits (163), Expect = 5e-14
 Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 387 CSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCT--E 442
            +  C   P    C CP G   N     C D DEC  +  C Q C N    Y C C   +
Sbjct: 14  GTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS-ENMCAQLCVNYPGGYTCYCDGKK 72

Query: 443 GYTLRPDGKSCTAVN 457
           G+ L  D KSC  V+
Sbjct: 73  GFKLAQDQKSCEVVS 87

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 415 DADECLID--GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
           D DEC +         C N    + C C EGY      KSC  ++
Sbjct: 2   DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDID 46

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 67.9 bits (165), Expect = 2e-12
 Identities = 30/72 (41%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 387 CSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYT 445
           CSH C+    G  C CP G Q   + +C D DEC    +C Q C N    Y C C EG+ 
Sbjct: 10  CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQ 69

Query: 446 LRPDGKSCTAVN 457
           L P  K+C AV 
Sbjct: 70  LDPHTKACKAVG 81

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 60.6 bits (146), Expect = 3e-10
 Identities = 21/63 (33%), Positives = 39/63 (61%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           +++K G++G +   LVT+NIQWP+ + +D     LYW DS L+++ S+ V+G +   +  
Sbjct: 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 285

Query: 167 PNE 169
             +
Sbjct: 286 DEK 288

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 13/161 (8%)

Query: 161 NAVLCHPNELRCG----SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGK 216
           +        + C     S  +C    +   G  D ++        +       F C  GK
Sbjct: 157 SINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKAD-SPMDDFFQCVNGK 215

Query: 217 CIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCST-DD 275
            I +   CDG  DC  D SDE   C   C      C  S  CIP  + C+ E+DC T +D
Sbjct: 216 YISQMKACDGINDC-GDQSDELC-C-KACQGKGFHCK-SGVCIPSQYQCNGEVDCITGED 271

Query: 276 IVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDC 316
            V           +           ++ I        ++ C
Sbjct: 272 EVGCAGFASVAQEETEILTADMDAERRRIKS---LLPKLSC 309

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 27/155 (17%)

Query: 303 CIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDG 362
           C           D +  D+V  T +               +  +C +  + ++  K CDG
Sbjct: 178 CTFTKRRTMGYQDFA--DVVCYTQKA---------DSPMDDFFQCVNG-KYISQMKACDG 225

Query: 363 KPDCSNGEDE---GPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADEC 419
             DC +  DE            C++  C                   N         DE 
Sbjct: 226 INDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQ------------CNGEVDCITGEDEV 273

Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
              G        T +       E   ++      +
Sbjct: 274 GCAGFASVAQEETEILTADMDAERRRIKSLLPKLS 308

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 387 CSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGY 444
           C+ KC        C C  G     +   C D +EC  +G C Q CTN+  ++ C C  GY
Sbjct: 13  CAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGY 72

Query: 445 TLRPDGKSCTAVNVPQ 460
            LRPD +SC A+    
Sbjct: 73  ELRPDRRSCKALGPEP 88

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 60.2 bits (145), Expect = 5e-10
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           R+E + M G  R  +   ++ WP+ L IDY    +YW D+  + +E   +DGSH   +  
Sbjct: 226 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS 285

Query: 167 PN 168
             
Sbjct: 286 QG 287

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 20/182 (10%)

Query: 3   HQCFN--GQVQCALSK--KCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFK--------- 49
            +C    G VQC      +       C +  +C+ +        + +  F+         
Sbjct: 15  QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYEL 74

Query: 50  ----RILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLD 105
               R         +        +  +         L     N +   +      +F  D
Sbjct: 75  RPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSD 134

Query: 106 E---RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNA 162
               R+ +A ++G N   +V+  ++ P  L +D+  D LYW DS  + +E   +DG+H  
Sbjct: 135 VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194

Query: 163 VL 164
           VL
Sbjct: 195 VL 196

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 376 CNNKADCENLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHL 434
              +  C    C   C P    A C CP G    +   C D DEC   G C   C N   
Sbjct: 40  HRCQMFCNQTACPADCDPNT-QASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPG 98

Query: 435 SYVCSCTEGYTLRP-DGKSC 453
           ++ C C     L    G  C
Sbjct: 99  TFECICGPDSALAGQIGTDC 118

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 387 CSHKCSPTPRGAMCFCPAG---QNPNKTQCVDADECLID--GSCDQTCTNTHLSYVCSCT 441
              +C  TP    C C  G          C+D DEC  D        C NT  SY C C 
Sbjct: 14  GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECP 73

Query: 442 EGYTLRPDGKSC 453
            G+ L P+  +C
Sbjct: 74  PGHQLSPNISAC 85

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 63.2 bits (153), Expect = 4e-11
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC- 165
           ++E+AGM G +R  ++   I WP+ L +DY +  LYW D+ LN +    +DG++   +  
Sbjct: 146 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 205

Query: 166 ----HPNELRCGS---------SNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSC 212
               HP  L             ++  +A +K+        + +   P      +  +   
Sbjct: 206 GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPN 265

Query: 213 GMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHN 262
               C  ++  C     CL         C   C  G       K C   N
Sbjct: 266 ATNPCGIDNGGCSHL--CLMSPVKPFYQCA--CPTGVKLLENGKTCKDGN 311

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 105 DERLEKAGMHGENRSP-LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAV 163
           +E +++   +       +V   +  P  L  D+  + LYW DS  N +E   +DGS   V
Sbjct: 56  EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115

Query: 164 L 164
           L
Sbjct: 116 L 116

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLS-- 435
           NK   E L+  H    +P     F    Q             + +G C   C  + +   
Sbjct: 235 NKYTGEGLREIHSDIFSPMDIHAFSQQRQ-----PNATNPCGIDNGGCSHLCLMSPVKPF 289

Query: 436 YVCSCTEGYTLRPDGKSCTAVN 457
           Y C+C  G  L  +GK+C   N
Sbjct: 290 YQCACPTGVKLLENGKTCKDGN 311

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 374 PFCNNKADCENLKCSHKCSPTPR--GAMCFCPAGQ--NPNKTQCVDADEC 419
           P   N    +N  CSH C  +P      C CP G     N   C D +  
Sbjct: 264 PNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 341 HPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMC 400
            P +  C  + +        DG+ +     +          C +L  +     T      
Sbjct: 35  DPTKTICIETIKGTCWQTVIDGRCEI----NINGATLKSQCCSSLGAAWGSPCTLCQVDP 90

Query: 401 FCPAG-QNPNKTQCVDADECLIDGSC--DQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
            C  G      TQC D DEC +      +  C NT  S+ C C  G TL   G+ C
Sbjct: 91  ICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
           D DEC      +  C N+  S++C C+   TL P    C    
Sbjct: 3   DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI 45

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 54.1 bits (131), Expect = 9e-10
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 387 CSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLSYVCSCTEGYT 445
              +C  T     C CP G      +CVD DEC +     + TC N    + C+C EG+ 
Sbjct: 15  KHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFE 74

Query: 446 LRPDG 450
             P  
Sbjct: 75  PGPMM 79

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 413 CVDADECLIDGSC-DQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
            VD DEC     C    C NT  SY C C  GY L   G  C   +
Sbjct: 2   AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTD 45

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLID--GSCDQTCTNTH 433
            KA     +     + +    +C    G   NP      D DEC           C NT 
Sbjct: 82  GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTF 141

Query: 434 LSYVCSCTEGYTLRPDGKSC 453
            S+ C C  GY L  D + C
Sbjct: 142 GSFQCRCPTGYYLNEDTRVC 161

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 8/76 (10%), Positives = 15/76 (19%), Gaps = 2/76 (2%)

Query: 384 NLKCSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCT 441
           N     +         C    G   +     C                  +    +C   
Sbjct: 48  NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGG 107

Query: 442 EGYTLRPDGKSCTAVN 457
           EG+   P       ++
Sbjct: 108 EGFRPNPITVILEDID 123

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 387 CSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGY 444
            S  C  TP   +C CP     NP +  CVD      +   D      +    CS   G 
Sbjct: 13  ISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG--NCYLDIRPRGDNGDTACSNEIGV 70

Query: 445 TLRPDGKSC 453
            +      C
Sbjct: 71  GVSKASCCC 79

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 201 CNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIHQ 244
              +C PG+F+C   +CI E WKCDG  DC  D SDE    C   
Sbjct: 2   SPPQCQPGEFACANSRCIQERWKCDGDNDC-LDNSDEAPALCHQH 45

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 21/63 (33%), Positives = 39/63 (61%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           +++K G++G +   LVT+NIQWP+ + +D     LYW DS L+++ S+ V+G +   +  
Sbjct: 144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 203

Query: 167 PNE 169
             +
Sbjct: 204 DEK 206

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 117 NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
           +   +++++IQ P  L +D+    +YW DS L TV      G     L
Sbjct: 67  SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 114

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSHNAVLC 165
            +  A   G  R  L  +N   P ++V+D     +YW D      ++   ++G     L 
Sbjct: 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159

Query: 166 HPN 168
             N
Sbjct: 160 TEN 162

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHL--- 434
           N+    ++    +   +P   + F    Q      C      L +G C   C        
Sbjct: 235 NRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWC--ERTTLSNGGCQYLCLPAPQINP 292

Query: 435 ---SYVCSCTEGYTLRPDGKSC 453
               + C+C +G  L  D +SC
Sbjct: 293 HSPKFTCACPDGMLLARDMRSC 314

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 9/51 (17%)

Query: 414 VDADECLID---------GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
           VD DEC              C   C N    Y CSC  GY L+ D  SC A
Sbjct: 2   VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++E+A + G  R  L    +  P +L +D     L+W DS L  +ES  + G++  VL  
Sbjct: 457 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLED 516

Query: 167 PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFS--CGMGKCIPESWKC 224
            N L+            + D +       D            + +    +      + + 
Sbjct: 517 SNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQE 576

Query: 225 DGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDC 271
                C +D     + C+ +  +G  +C+    C  H  L  +E+ C
Sbjct: 577 YRQHPCAQDNGGCSHICLVK-GDGTTRCS----CPMHLVLLQDELSC 618

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 19/221 (8%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++++A M G  R+ LV  N+   + L IDY +  LYW D   N +ES  + G +  V+  
Sbjct: 147 KIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 205

Query: 167 PNELRCGSSNQCVALSKF------CDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPE 220
                         L+++       D         ++    N     G     M   +  
Sbjct: 206 -------DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFH 258

Query: 221 SWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
           S +  G+ +C    +     C H C            C  H  L  +   CS        
Sbjct: 259 SSRQSGWNEC----ASSNGHCSHLCLAVP-VGGFVCGCPAHYSLNADNRTCSAPTTFLLF 313

Query: 281 DEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDI 321
            +         + Q    +         +   + D     +
Sbjct: 314 SQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQL 354

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 105 DERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
            + + +A M+G     +V   + +P  + +D+    LYW D+  N +E  ++DG H  VL
Sbjct: 58  LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL 117

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 107 RLEKAGMHGENRSPLVTKNIQ------WPSSLVIDYNQDILYWCDSHLNTVESVRVDGSH 160
            + KA   G     +V  ++        P  L ID     +YW     N +   R+DG  
Sbjct: 363 MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS 422

Query: 161 NAVL 164
             V+
Sbjct: 423 VGVV 426

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 17/182 (9%), Positives = 55/182 (30%), Gaps = 23/182 (12%)

Query: 5   CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNH 64
           C           +              S  + +   ++        I +  +  A++++ 
Sbjct: 291 CPAHY-SLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDP 349

Query: 65  RNQSLCF--IQQQNVSSVRL-----RCAQINDLLNSWDLPAPEIFPLDE----------- 106
            ++ L +   +Q  +   +          ++ + +      P    +D            
Sbjct: 350 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA 409

Query: 107 --RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN--TVESVRVDGSHNA 162
              +    + G +   ++      P ++V++  +  +Y+ +       +E   +DG+   
Sbjct: 410 TNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE 469

Query: 163 VL 164
           VL
Sbjct: 470 VL 471

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 50.3 bits (121), Expect = 7e-09
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C+  +F C  G+CI  SW+CDG  DC +D SDE N
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDC-KDKSDEEN 35

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++E+A + G +R  LV  ++ WP+ L +DY++  +YW D+  + +E +  DG+   VL  
Sbjct: 459 KIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE 518

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           ++E+AGM G +R  ++   I WP+ L +DY +  LYW D+ LN +    +DG++   +  
Sbjct: 151 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 210

Query: 167 PN 168
            +
Sbjct: 211 GS 212

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 12  CALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCF 71
           C +S     +   C   +    +     T +D       +   T    +  +  + +   
Sbjct: 286 CLMSPVKPFYQCACPTGVKLLENG---KTCKDGATELLLLARRTDLRRISLDTPDFTDIV 342

Query: 72  IQQQNVSSVR-LRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPS 130
           +Q +++     +    +   +   D     I        ++ + G     +VT  I  P 
Sbjct: 343 LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIR-------RSFIDGSGSQFVVTAQIAHPD 395

Query: 131 SLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPN 168
            + +D+    LYW D+  + +E  R++G+   +L   +
Sbjct: 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISED 433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 105 DERLEKAGMHGENRSP-LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAV 163
           +E +++   +       +V   +  P  L  D+  + LYW DS  N +E   +DGS   V
Sbjct: 61  EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 120

Query: 164 LCHPN 168
           L    
Sbjct: 121 LFWQE 125

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 14/44 (31%)

Query: 410 KTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
                       +G C   C        C+C  G+ L  D K+C
Sbjct: 573 HRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 201 CNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
              EC   QF C   +CIP  W+CD   DC  D SDE +
Sbjct: 4   PAKECEKDQFQCRNERCIPSVWRCDEDDDC-LDHSDEDD 41

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 15/62 (24%), Positives = 21/62 (33%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
           C P+   C  ++ CV     CDG  DC++G DE               G G       + 
Sbjct: 9   CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRL 68

Query: 225 DG 226
             
Sbjct: 69  AS 70

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 205 CTPGQFSC-GMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCAL-SKKCIPHN 262
           C P  FSC G   C+PE W CDG  DC  DG+DE       C          S       
Sbjct: 9   CGPSSFSCPGTHVCVPERWLCDGDKDC-ADGADESIAA--GCLYNSTGSGSGSGSTEELR 65

Query: 263 WLCDEEMDC 271
                 +  
Sbjct: 66  VRLASHLRK 74

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPR 396
           C P+   C  ++ CV     CDG  DC++G DE        +          +   R
Sbjct: 9   CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELR 65

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 13/76 (17%)

Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRC 347
             C      C  +  C+P  WLCD + DC+     D  DE         A  C  N    
Sbjct: 7   KTCGPSSFSCPGTHVCVPERWLCDGDKDCA-----DGADE-------SIAAGCLYNSTGS 54

Query: 348 GSSNQCVALSKF-CDG 362
           GS +      +     
Sbjct: 55  GSGSGSTEELRVRLAS 70

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 52.9 bits (126), Expect = 4e-08
 Identities = 24/128 (18%), Positives = 37/128 (28%), Gaps = 7/128 (5%)

Query: 167 PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAE---CTPGQFSCGM--GKCIPES 221
            N++    S+    L    D K     G         E   C   +  CG    +CI + 
Sbjct: 14  TNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKL 73

Query: 222 WKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALS-KKCIPHNWLCDEEMDCSTDDIVDNT 280
           + CDG  DC  +G DE +  +      +    +    C             S+      T
Sbjct: 74  FVCDGHNDC-RNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFT 132

Query: 281 DEDWDKFH 288
                  H
Sbjct: 133 PIADLHVH 140

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 3/122 (2%)

Query: 165 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSC--GMGKCIPES 221
           C  +E +CG  + QC++    CDG  DC NGEDE           +F        C    
Sbjct: 55  CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRR 114

Query: 222 WKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTD 281
            +           +           + +++    +     +   D E   +   +  +  
Sbjct: 115 PEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPP 174

Query: 282 ED 283
           E+
Sbjct: 175 EE 176

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 16/100 (16%)

Query: 274 DDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYF 333
           D+I+D   E  +K        V+  L  +  P        +    +++ D +        
Sbjct: 4   DEIIDKLIERTNKI-TTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPS-------- 54

Query: 334 SHNAVLCHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDE 372
                 C  +E +CG  + QC++    CDG  DC NGEDE
Sbjct: 55  ------CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 47.7 bits (114), Expect = 6e-08
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 202 NAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIHQ 244
           +  C+  QF C  G+CIPE W CDG  DC  D SDE +  C +Q
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDC-GDYSDETHANCTNQ 44

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 417 DECLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
             C +D G CDQ C     S VCSC  GYTL  +GK+C    
Sbjct: 2   KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 43

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 4/82 (4%)

Query: 376 CNNKADCENLKCSH--KCSPTPRGAMCFCPAG-QNPNKTQCVDADECLID-GSCDQTCTN 431
                      C     C        C C +G +     + V    C +D G C   C  
Sbjct: 11  VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLE 70

Query: 432 THLSYVCSCTEGYTLRPDGKSC 453
                 CSC  GY L  D   C
Sbjct: 71  EVGWRRCSCAPGYKLGDDLLQC 92

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 201 CNAECTPGQFSCGMGK-CIPESWKCDGFVDCLEDGSDEPN 239
               CT  QF C  G  CI   ++CDG  DC  D SDE  
Sbjct: 3   MVLNCTSAQFKCADGSSCINSRYRCDGVYDC-RDNSDEAG 41

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C   + +C   + C+     CDG  DC +  DE
Sbjct: 7   CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C   + +C   + C+     CDG  DC +  DE
Sbjct: 7   CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 205 CTPGQFSCGMG--KCIPESWKCDGFVDCLEDGSDEPN 239
           C   + SCG    +CIP SW+CDG  DC + G DE N
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDC-DSGEDEEN 36

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 197
           C  +E+ CG+ S QC+ +S  CDG+ DC +GEDE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 340 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 372
           C  +E+ CG+ S QC+ +S  CDG+ DC +GEDE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 205 CTPGQFSCGM-GKCIPESWKCDGFVDCLEDGSDEPN 239
           C   +F C + G CIP  W+CDG  DC  D SDE +
Sbjct: 4   CHTDEFQCRLDGLCIPLRWRCDGDTDC-MDSSDEKS 38

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENL 385
           CH +E +C     C+ L   CDG  DC +  DE         CE +
Sbjct: 4   CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE-------KSCEGV 42

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           CH +E +C     C+ L   CDG  DC +  DE
Sbjct: 4   CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 202 NAECTPGQFSCG-----MGKCIPESWKCDGFVDCLEDGSDEPN 239
           ++ C PGQF C       G+C P+ W CDG  DC +DG DE  
Sbjct: 2   SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDC-DDGRDEWG 43

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
           R+E + M G  R  +   ++ WP+ L IDY    +YW D+  + +E   +DGSH   +  
Sbjct: 183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS 242

Query: 167 PN 168
             
Sbjct: 243 QG 244

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 49.9 bits (118), Expect = 9e-07
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 417 DECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
           +EC  +G C Q CTN+  ++ C C  GY LRPD +SC A+ 
Sbjct: 2   NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG 42

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 110 KAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
           +A ++G N   +V+  ++ P  L +D+  D LYW DS  + +E   +DG+H  VL
Sbjct: 99  RANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 419 CLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV 456
           C +D G CDQ C        CSC  GY L  D KSC + 
Sbjct: 1   CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVST 39

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 205 CTPGQFSC-GMGKCIPESWKCDGFVDCLEDGSDEPNTC 241
           C P  FSC G   C+PE W CDG  DC  DG+DE    
Sbjct: 7   CGPSSFSCPGTHVCVPERWLCDGDKDC-ADGADESIAA 43

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC 382
           C P+   C  ++ CV     CDG  DC++G DE        + 
Sbjct: 7   CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNS 49

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN 202
           C P+   C  ++ CV     CDG  DC++G DE     
Sbjct: 7   CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 202 NAECTPGQFSC-----GMGKCIPESWKCDGFVDCLEDGSDEPN 239
              C PGQF C       G+C P+ W CDG  DC +DG DE  
Sbjct: 4   FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDC-DDGRDEWG 45

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 376 CNNKADCENLKCSHKCS-PTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCD--QTCTN 431
           C   +DC N + S+ C        +      +N ++  C D DEC      CD    C N
Sbjct: 55  CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114

Query: 432 THLSYVCSCTEGYTLRPDGKSCTAVNV 458
           T  SY C C  G+  R    +     V
Sbjct: 115 TVGSYSCRCRPGWKPRHGIPNNQKDTV 141

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 413 CVDADECLID-GSCDQTCTNTHLS-YVCSCTEGYTLRPDGKSCTAV 456
             D   C+ + G C+Q C++   +   C C EGY+L  DG SCT  
Sbjct: 2   KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 47

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 202 NAECTPGQFSCGMG-KCIPESWKCDGFVDCLEDGSDEPN 239
           + +C+ G F CG   KC+P+   C+G  DC  + +DE N
Sbjct: 4   DVKCSLGYFPCGNITKCLPQLLHCNGVDDC-GNQADEDN 41

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C      CG+  +C+     C+G  DC N  DE
Sbjct: 7   CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C      CG+  +C+     C+G  DC N  DE
Sbjct: 7   CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 42.1 bits (99), Expect = 9e-06
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 419 CLID-GSCDQTCTNT-HLSYVCSCTEGYTLRPDGKSCTAV 456
           C I  G C+Q C N+     VCSCTEGY L  + KSC   
Sbjct: 2   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA 41

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 12/151 (7%)

Query: 189 PDCSNGEDEGPFCNAE---CTPGQFSCGM--GKCIPESWKCDGFVDCLEDGSDEPNTCIH 243
           P+    E +      E   C    F CG    +CI +   CDG  DC  +  DE      
Sbjct: 34  PEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDC-HNAHDEDPDV-- 90

Query: 244 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD-KFHQCFNGQVQCALSK- 301
            C    V+             C    D  T   +  +               V+  L + 
Sbjct: 91  -CDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERH 149

Query: 302 -KCIPHNWLCDEEMDCSTDDIVDNTDEDWDK 331
            + +  ++      + ++  ++    +D D 
Sbjct: 150 GENVTSSFNAKGYYNFASRRLILLPTDDHDD 180

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 12/135 (8%)

Query: 165 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESW- 222
           C     +CG +  +C++    CDG  DC N  DE P     C       G       +W 
Sbjct: 53  CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP---DVCDTSVVKAGNVFSGTSTWH 109

Query: 223 ----KCDGFVDCLEDGSDEPNTCI-HQCFNGQVQCALSK--KCIPHNWLCDEEMDCSTDD 275
               + D         S               V+  L +  + +  ++      + ++  
Sbjct: 110 GCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRR 169

Query: 276 IVDNTDEDWDKFHQC 290
           ++    +D D     
Sbjct: 170 LILLPTDDHDDHLAV 184

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 382 CENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLSYVC 438
           C +  C H   C  +  G  C C  G   +  +    +        C   C     SY C
Sbjct: 8   CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67

Query: 439 SCTEGYTLRPDGKSCTAVNVPQDEP 463
           SC +GY L  D K C   +      
Sbjct: 68  SCAQGYRLGEDHKQCVPHDQCACGV 92

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 4/54 (7%)

Query: 410 KTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEP 463
           K +C           C   C     SY CSC +GY L  D K C   +      
Sbjct: 2   KNECHPER----TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV 51

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 419 CLID-GSCDQTCTNTHLS-YVCSCTEGYTLRPDGKSCTAV 456
           C+ + G C+Q C++   +   C C EGY+L  DG SCT  
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 411 TQCVDADEC--LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
               D +EC   +D  C   C N    Y CSC   Y L  D K+C 
Sbjct: 112 YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 105 DERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
           D  +    ++  N   L   NI+  +     Y   I Y        +  V+ DG+    L
Sbjct: 206 DNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPALCVVKNDGTGFKEL 261

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 15/132 (11%), Positives = 31/132 (23%), Gaps = 7/132 (5%)

Query: 165 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDEGP-----FCNAECTPGQFSCGMGKCI 218
           C  +E  C     +C+    FCDG+ DC +G DE P           +          C 
Sbjct: 54  CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCE 113

Query: 219 PESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVD 278
             +                    +        +                  +    +++ 
Sbjct: 114 DLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELD-EHDHTVSTTQLRGFYNFGKRELLL 172

Query: 279 NTDEDWDKFHQC 290
              +   + +  
Sbjct: 173 APLKGQSEGYGV 184

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 360 CDGKPDCSNGEDEGPFCNNKADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDAD 417
            +   D     +      +   CE   C +  KC        C C  G      +     
Sbjct: 23  REVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 82

Query: 418 ECLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
            C +D G CDQ C     S VCSC  GYTL  +GK+C
Sbjct: 83  LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 376 CNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQ---CVDADECLID---GSCDQTC 429
           C      E+ +C  +     + A C C  G  PN      C    E        + ++ C
Sbjct: 94  CQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVC 153

Query: 430 TNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
            N    Y C C EG+T   +   C   +
Sbjct: 154 XNVEGVYXCQCMEGFTFDXEXNVCLGPH 181

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 411 TQCVDADECLI----DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV 458
               D DEC +      +CD  C N    + CSC  GY L  + ++C+  ++
Sbjct: 119 YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQSL 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	482
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.79
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.76
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.76
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.43
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.39
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.27
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.25
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.25
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.2
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.19
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.13
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.12
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.12
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.09
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.07
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.06
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.04
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.03
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.03
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.02
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.0
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.99
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.99
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.97
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.95
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.95
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.93
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.92
1cr8_A	42	Protein (LOW density lipoprotein receptor related	98.91
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.9
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.89
2vh0_B	134	Activated factor XA light chain; serine protease,	98.88
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	98.87
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.87
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.86
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.86
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.86
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	98.85
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.82
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	98.82
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.81
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.81
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	98.8
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.8
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.78
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.73
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.72
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.7
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.68
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.68
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.63
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.6
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.59
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.59
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.58
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.55
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.55
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.54
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	98.49
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.49
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	98.47
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	98.46
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.37
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.33
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.25
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	98.23
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.23
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.2
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.19
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.17
2wph_E	59	Coagulation factor IXA light chain; serine proteas	98.13
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.07
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.01
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	97.9
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.83
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	97.79
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.76
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.76
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	97.63
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	97.62
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	97.61
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.56
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.54
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.52
2wph_E	59	Coagulation factor IXA light chain; serine proteas	97.45
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.45
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.32
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.28
1szb_A	170	Mannose binding lectin-associated serine protease-	97.19
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.15
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	97.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.12
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.09
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.07
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	97.04
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.0
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	96.99
2vh0_B	134	Activated factor XA light chain; serine protease,	96.85
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	96.85
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	96.8
1nzi_A	159	Complement C1S component; calcium, innate immunity	96.6
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	96.31
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	96.19
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	96.04
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	95.82
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	95.67
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	95.53
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.48
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.47
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	95.47
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	95.29
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.87
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	94.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.43
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	94.16
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	93.97
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	93.76
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	93.17
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	93.17
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	92.94
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	92.9
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	91.77
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	91.5
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	91.41
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	90.88
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	90.87
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	90.8
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	90.32
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	90.24
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	90.21
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	89.69
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	89.46
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	88.56
1szb_A	170	Mannose binding lectin-associated serine protease-	87.9
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	87.85
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	87.44
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.4
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	87.25
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	86.66
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	85.42
1ob1_C	99	Major merozoite surface protein; immune system, im	83.77
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	83.07
1nzi_A	159	Complement C1S component; calcium, innate immunity	80.37
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	80.27

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=2.4e-65  Score=567.09  Aligned_cols=371  Identities=33%  Similarity=0.729  Sum_probs=292.5

Q ss_pred             cccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCccc--ccccceeccCcccccceeccCCCceeeecccccccc
Q psy14262          3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW--DKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSV   80 (482)
Q Consensus         3 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~--~~~~~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~~   80 (482)
                      +.|.++||+|. ||+|||..|+|||++||+     |+|||..  |...                                
T Consensus         4 ~~C~~~~f~C~-~g~ci~~~~~Cdg~~dC~-----d~sDE~~~~C~~~--------------------------------   45 (699)
T 1n7d_A            4 DRCERNEFQCQ-DGKCISYKWVCDGSAECQ-----DGSDESQETCLSV--------------------------------   45 (699)
T ss_dssp             ----------------------------------------------CC--------------------------------
T ss_pred             CCCCccceeCC-CCcEEcHHhcCCCcccCC-----CCCCCCccccCCc--------------------------------
Confidence            57999999998 899999999999999998     9999975  3110                                


Q ss_pred             cccccccccCCCCCCCCCCCCCChhhhhhhccCCCCCCcceeeCC---ceecCceeeCCCCCCCcccCCCCCCccccccC
Q psy14262         81 RLRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKN---IQWPSSLVIDYNQDILYWCDSHLNTVESVRVD  157 (482)
Q Consensus        81 ~~~c~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~  157 (482)
                        .|                                ....|.|.+   +|||..|+|||..||.|      ||||.    
T Consensus        46 --~C--------------------------------~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~d------gsDE~----   81 (699)
T 1n7d_A           46 --TC--------------------------------KSGDFSCGGRVNRCIPQFWRCDGQVDCDN------GSDEQ----   81 (699)
T ss_dssp             --SC--------------------------------SSSSCCCCC--CCCCCSSSTTSSSCCC-C------CCTTT----
T ss_pred             --CC--------------------------------CCCccCCCCCCCceeCcceecCCcccCCC------CcccC----
Confidence              01                                001244433   79999999999999999      99998    


Q ss_pred             CCCCCccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCeeccCCCCCCCcCCCCCCCC
Q psy14262        158 GSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN-AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSD  236 (482)
Q Consensus       158 ~~c~~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~-~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsD  236 (482)
                       +|...+|.+.+|+|.++ +||+.+|+|||..||.|||||.+ |. ..|.+.+|+|.+|+||+..|+|||..|| .||||
T Consensus        82 -~C~~~~C~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~-C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC-~dgsD  157 (699)
T 1n7d_A           82 -GCPPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEAS-CPVLTCGPASFQCNSSTCIPQLWACDNDPDC-EDGSD  157 (699)
T ss_dssp             -SCSSCCCCSSCCCSSCC-----CCCTTCSSCCSSSSCSSSS-CCCCCCCSSCCCCSSSCCCCTTSTTCSSCCS-SSSSS
T ss_pred             -cccccccccCcEEcCCC-CEecHHHcCCCcCcCCCCCccCC-cCccccCccccCCCCCcccchhcccCCCCcC-CCCcc
Confidence             89888899999999987 89999999999999999999998 97 5799999999999999999999999999 99999


Q ss_pred             C--CCccc--------ccccCCccccCCCCceecCCCccCccCCCCCCCCCCCCCCCCCCCccccCcccccCCCCccCCC
Q psy14262        237 E--PNTCI--------HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPH  306 (482)
Q Consensus       237 E--~~C~~--------~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE~~C~~~~C~~~~f~C~~g~~Ci~~  306 (482)
                      |  .+|..        ..|...+|+|. +|.||+..|+|||..||.     ||+||.+|....|.+.+|+|.++ +||+.
T Consensus       158 E~~~~C~~~~~~~~~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~dC~-----dgsDE~~C~~~~C~~~~f~C~~g-~Ci~~  230 (699)
T 1n7d_A          158 EWPQRCRGLYVFQGDSSPCSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDEENCAVATCRPDEFQCSDG-NCIHG  230 (699)
T ss_dssp             SSCSSSSCCCCCSSCCCCSCSSSCCCS-SSCCCSTTCTTSSSCCST-----TSCSSCSCCCCCCCSSEEESSSS-CEEET
T ss_pred             cccccCCCcccccCCCCCCCCcceecC-CCceEechhccCCCCCCC-----CCcccccCCCcccCCCcEecCCC-ceeee
Confidence            9  88953        46999999999 889999999999999999     99999999878899999999976 99999


Q ss_pred             CCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccc-cCCCcccCCCCcccccccccCCCCCCCCCCCCCC-CCCCCCCcc-
Q psy14262        307 NWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLC-HPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP-FCNNKADCE-  383 (482)
Q Consensus       307 ~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C-~~~~f~C~~g~~Ci~~~~~CDg~~dC~dgsDE~~-~C~~~~~C~-  383 (482)
                      +|+|||+.||.     ||+||.+   |.. ...| .+.+|+|.++ .||+..++||+..+|.+|+||.. .|.++ +|. 
T Consensus       231 ~~~Cdg~~dC~-----dgsde~~---C~~-~~~C~~~~~~~C~~g-~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~-eC~~  299 (699)
T 1n7d_A          231 SRQCDREYDCK-----DMSDEVG---CVN-VTLCEGPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPIKECGTN-ECLD  299 (699)
T ss_dssp             TCCSSSCCCSS-----SSCSSSS---TTC-CCCCCSTTCCCCTTS-CCCCSSCCSCSSCCSSSSCSCCCSSCCCC-CTTS
T ss_pred             ecccCCCCCCC-----CCCccCC---CCC-CCcccCCCceecCCC-cEeCCcccccccceecCcccccccccccc-cccc
Confidence            99999999999     9999998   865 3467 4778999997 99999999999999999999974 37777 897 


Q ss_pred             -CCCCcCCCCCCCCCccccCCCCc-cCCCCCccccccccCCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCCC
Q psy14262        384 -NLKCSHKCSPTPRGAMCFCPAGQ-NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQD  461 (482)
Q Consensus       384 -~~~C~~~C~~~~~~~~C~C~~G~-~~~~~~C~di~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~  461 (482)
                       +++|+++|.+++++|+|.|++|| ..++++|++++||..+++|+++|+|++|+|+|.|++||++..++++|++++   .
T Consensus       300 ~~~~C~~~C~~~~~~~~C~C~~G~~~~~~~~C~dideC~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~---~  376 (699)
T 1n7d_A          300 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG---S  376 (699)
T ss_dssp             STTTSCTTCCCCTTCCCCCCCSSSCCCSSSCCCCCCCCSSSSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCS---S
T ss_pred             cccCcCCCcccCCCCcEEeCCCCeEcCCCCcccCccccCCCCccccccccCCCCeeeeeecccccCCCCCcccccc---c
Confidence             46799999999999999999999 556889999999986788999999999999999999999999999999886   4


Q ss_pred             CCcEEEeccCCceEEEeccC
Q psy14262        462 EPASIIFSSTVDIRRIHLNG  481 (482)
Q Consensus       462 ~p~~l~~~~~~~ir~~~l~~  481 (482)
                      .+ +|||+++++|++|.|.+
T Consensus       377 ~~-~ll~~~~~~I~~id~~~  395 (699)
T 1n7d_A          377 IA-YLFFTNRHEVRKMTLDR  395 (699)
T ss_dssp             CC-CBCCCCTTC-CEECTTS
T ss_pred             ce-eEEecCccceEEEeCCC
Confidence            56 99999999999999865

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=4.9e-65  Score=569.07  Aligned_cols=373  Identities=34%  Similarity=0.722  Sum_probs=123.0

Q ss_pred             cccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccccccceeccCcccccceeccCCCceeeecccccccccc
Q psy14262          3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRL   82 (482)
Q Consensus         3 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~~~~~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~   82 (482)
                      ..|.++||+|. ||+|||..|+|||++||+     |+|||..+.                 |..        ..|.+   
T Consensus        22 ~~C~~~~f~C~-~g~Ci~~~~~CDg~~dC~-----D~sDE~~~~-----------------C~~--------~~C~~---   67 (791)
T 3m0c_C           22 DRCERNEFQCQ-DGKCISYKWVCDGSAECQ-----DGSDESQET-----------------CLS--------VTCKS---   67 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcCcCccCCC-CCCEEehhhcCCCCccCC-----CCCcccccc-----------------ccc--------CccCc---
Confidence            47999999998 899999999999999998     999997521                 000        00111   


Q ss_pred             cccccccCCCCCCCCCCCCCChhhhhhhccCCCCCCcceeeC---CceecCceeeCCCCCCCcccCCCCCCccccccCCC
Q psy14262         83 RCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTK---NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS  159 (482)
Q Consensus        83 ~c~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~~~  159 (482)
                                                          ..|+|.   ++|||..|+|||..||.|      ++||.     +
T Consensus        68 ------------------------------------~~f~C~~~~~~Ci~~~~~CDg~~dC~d------gsDE~-----~  100 (791)
T 3m0c_C           68 ------------------------------------GDFSCGGRVNRCIPQFWRCDGQVDCDN------GSDEQ-----G  100 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------CccccCCCCCCEeeccccCCCCcCcCC------CcccC-----C
Confidence                                                123443   379999999999999999      99998     8


Q ss_pred             CCCccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCC
Q psy14262        160 HNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN-AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEP  238 (482)
Q Consensus       160 c~~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~-~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~  238 (482)
                      |...+|.+.+|+|.++ +||+.+|+|||+.||.|||||.+ |. ..|.+.+|+|.+|+||+..|+|||..|| .|||||.
T Consensus       101 C~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~-C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC-~dgsDE~  177 (791)
T 3m0c_C          101 CPPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEAS-CPVLTCGPASFQCNSSTCIPQLWACDNDPDC-EDGSDEW  177 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCccccCCeEECCCC-CEECHHHcCCCcccCCCCccccc-ccccccccceeccCCCccccccccCCCCCcC-CCCCCcc
Confidence            9888899999999987 89999999999999999999998 97 5799999999999999999999999999 9999997


Q ss_pred             --Ccc--------cccccCCccccCCCCceecCCCccCccCCCCCCCCCCCCCCCCCCCccccCcccccCCCCccCCCCC
Q psy14262        239 --NTC--------IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNW  308 (482)
Q Consensus       239 --~C~--------~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE~~C~~~~C~~~~f~C~~g~~Ci~~~~  308 (482)
                        +|.        ...|...+|+|. +|.||+..|+|||..||.     |++||.+|....|.+.+|+|.++ .||+.+|
T Consensus       178 ~~~C~~~~~~~~~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~dC~-----dgsDE~~C~~~~C~~~~f~C~~g-~Ci~~~~  250 (791)
T 3m0c_C          178 PQRCRGLYVFQGDSSPCSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDEENCAVATCRPDEFQCSDG-NCIHGSR  250 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCccccCCCCCCCCCCccccc-CCceeccccccCCCCCCC-----CCCCCCCccccccCCCcceecCC-ceEecce
Confidence              673        345888999999 899999999999999999     99999999877899999999987 9999999


Q ss_pred             CCCCCCCCCCCCcCCCCCCCcCCcCccCcccc-cCCCcccCCCCcccccccccCCCCCCCCCCCCCCC-CCCCCCcc--C
Q psy14262        309 LCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLC-HPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPF-CNNKADCE--N  384 (482)
Q Consensus       309 ~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C-~~~~f~C~~g~~Ci~~~~~CDg~~dC~dgsDE~~~-C~~~~~C~--~  384 (482)
                      +|||..||.     |++||.+   |... ..| .+.+|+|.+| .||+..++||+..+|.+|+||... |..+ +|.  +
T Consensus       251 ~Cdg~~dC~-----dgsDE~~---C~~~-~~C~~~~~~~C~~G-~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~-~C~~~~  319 (791)
T 3m0c_C          251 QCDREYDCK-----DMSDEVG---CVNV-TLCEGPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPIKECGTN-ECLDNN  319 (791)
T ss_dssp             -------------------------------CCSTTCCCCTTS-CCCCSSCCSCSSCCSSSSCSCCCTTBSCC-STTTGG
T ss_pred             ecCChhccc-----cccccCc---cccc-ccccCCCccccCCC-cccccccccCCccccccccCccccccccc-cccccc
Confidence            999999999     9999998   8653 345 4789999997 999999999999999999999753 7777 887  4


Q ss_pred             CCCcCCCCCCCCCccccCCCCc-cCCCCCccccccccCCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCCCCC
Q psy14262        385 LKCSHKCSPTPRGAMCFCPAGQ-NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEP  463 (482)
Q Consensus       385 ~~C~~~C~~~~~~~~C~C~~G~-~~~~~~C~di~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~~p  463 (482)
                      ..|++.|.+++++|+|.|++|| ..++++|.+++||..++.|++.|+|++|+|+|.|++||+|..++++|++++   ..|
T Consensus       320 ~~C~~~C~~~~~~y~C~C~~Gy~l~~g~~C~dideC~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~---~~p  396 (791)
T 3m0c_C          320 GGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG---SIA  396 (791)
T ss_dssp             GGCSSEEEECSBSEEEECCTTCEEETTTEEECCCCCSSSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEETT---SCC
T ss_pred             cCccccccCCCCCcccCCCCCCccCCCCccccCcccCCCCCCCCeeecCCCCceeecCCCCEeCCCCceeeecc---ccc
Confidence            5788999999999999999999 557889999999987789999999999999999999999999999999998   456


Q ss_pred             cEEEeccCCceEEEeccC
Q psy14262        464 ASIIFSSTVDIRRIHLNG  481 (482)
Q Consensus       464 ~~l~~~~~~~ir~~~l~~  481 (482)
                       +|||+++++||+|.|.+
T Consensus       397 -~Ll~an~~~Ir~i~l~~  413 (791)
T 3m0c_C          397 -YLFFTNRHEVRKMTLDR  413 (791)
T ss_dssp             -EEEEECBSSEEEECTTS
T ss_pred             -ccccccccceeEeeccC
Confidence             99999999999999875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=2e-51  Score=455.48  Aligned_cols=310  Identities=31%  Similarity=0.713  Sum_probs=238.1

Q ss_pred             cceeeCC-ceecCceeeCCCCCCCcccCCCCCCccccccCCCCCCccCCCCCeecCCC-CceecCCcccCCCCCCCCCCC
Q psy14262        119 SPLVTKN-IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSS-NQCVALSKFCDGKPDCSNGED  196 (482)
Q Consensus       119 ~~~~~~~-~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~~~c~~~~C~~~~f~C~~~-~~Ci~~~~~CDg~~dC~dgsD  196 (482)
                      .+|+|.+ +|||..|+|||..||.|      +|||.   ...|...+|...+|+|.++ ++|||..|+|||+.||.||||
T Consensus         9 ~~f~C~~g~ci~~~~~Cdg~~dC~d------~sDE~---~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsD   79 (699)
T 1n7d_A            9 NEFQCQDGKCISYKWVCDGSAECQD------GSDES---QETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSD   79 (699)
T ss_dssp             --------------------------------------------CCSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCT
T ss_pred             cceeCCCCcEEcHHhcCCCcccCCC------CCCCC---ccccCCcCCCCCccCCCCCCCceeCcceecCCcccCCCCcc
Confidence            3578877 99999999999999999      99998   1128888899999999875 489999999999999999999


Q ss_pred             CCCCCC-CCCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCCceecCCCccCccCCCCCCC
Q psy14262        197 EGPFCN-AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDD  275 (482)
Q Consensus       197 E~~~C~-~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~~~~  275 (482)
                      |.+ |. ..|.+.+|+|.+|+||+..|+|||..|| .|||||.+|....|.+.+|+|. +|+||+..|+|||..||.   
T Consensus        80 E~~-C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC-~dgsDE~~C~~~~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~---  153 (699)
T 1n7d_A           80 EQG-CPPKTCSQDEFRCHDGKCISRQFVCDSDRDC-LDGSDEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCE---  153 (699)
T ss_dssp             TTS-CSSCCCCSSCCCSSCC----CCCTTCSSCCS-SSSCSSSSCCCCCCCSSCCCCS-SSCCCCTTSTTCSSCCSS---
T ss_pred             cCc-ccccccccCcEEcCCCCEecHHHcCCCcCcC-CCCCccCCcCccccCccccCCC-CCcccchhcccCCCCcCC---
Confidence            998 97 5799999999999999999999999999 9999999998888999999998 899999999999999999   


Q ss_pred             CCCCCCC--CCCCC--------ccccCcccccCCCCccCCCCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCCCc
Q psy14262        276 IVDNTDE--DWDKF--------HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNEL  345 (482)
Q Consensus       276 ~~dgsDE--~~C~~--------~~C~~~~f~C~~g~~Ci~~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~~f  345 (482)
                        |||||  .+|..        ..|.+.+|+|.++ +||+.+|+|||+.||.     ||+||.+   |.  ...|.+.+|
T Consensus       154 --dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~-----dgsDE~~---C~--~~~C~~~~f  220 (699)
T 1n7d_A          154 --DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCK-----DKSDEEN---CA--VATCRPDEF  220 (699)
T ss_dssp             --SSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSS-CCCSTTCTTSSSCCST-----TSCSSCS---CC--CCCCCSSEE
T ss_pred             --CCcccccccCCCcccccCCCCCCCCcceecCCC-ceEechhccCCCCCCC-----CCccccc---CC--CcccCCCcE
Confidence              99999  88953        4799999999987 9999999999999999     9999998   86  357999999


Q ss_pred             ccCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCcc---CCCCcC-CCCCCCC--CccccCCCCccCCCCCccccccc
Q psy14262        346 RCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCE---NLKCSH-KCSPTPR--GAMCFCPAGQNPNKTQCVDADEC  419 (482)
Q Consensus       346 ~C~~g~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~~~C~---~~~C~~-~C~~~~~--~~~C~C~~G~~~~~~~C~di~eC  419 (482)
                      +|.++ .||+.+++|||+.||.+|+||.. |....+|.   ...|.+ .|++...  .+.+.|+.|+.+....| +++||
T Consensus       221 ~C~~g-~Ci~~~~~Cdg~~dC~dgsde~~-C~~~~~C~~~~~~~C~~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C-~~~eC  297 (699)
T 1n7d_A          221 QCSDG-NCIHGSRQCDREYDCKDMSDEVG-CVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC-GTNEC  297 (699)
T ss_dssp             ESSSS-CEEETTCCSSSCCCSSSSCSSSS-TTCCCCCCSTTCCCCTTSCCCCSSCCSCSSCCSSSSCSCCCSSC-CCCCT
T ss_pred             ecCCC-ceeeeecccCCCCCCCCCCccCC-CCCCCcccCCCceecCCCcEeCCcccccccceecCccccccccc-ccccc
Confidence            99987 99999999999999999999988 86432563   345543 5654332  35678998884444456 68999


Q ss_pred             c-CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCC
Q psy14262        420 L-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQ  460 (482)
Q Consensus       420 ~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~  460 (482)
                      . ..+.|++.|+|++++|+|.|++||+| .++++|++|+||.
T Consensus       298 ~~~~~~C~~~C~~~~~~~~C~C~~G~~~-~~~~~C~dideC~  338 (699)
T 1n7d_A          298 LDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQ  338 (699)
T ss_dssp             TSSTTTSCTTCCCCTTCCCCCCCSSSCC-CSSSCCCCCCCCS
T ss_pred             cccccCcCCCcccCCCCcEEeCCCCeEc-CCCCcccCccccC
Confidence            8 55789999999999999999999998 6899999999997

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=1.1e-50  Score=453.33  Aligned_cols=311  Identities=32%  Similarity=0.709  Sum_probs=59.3

Q ss_pred             CcceeeCC-ceecCceeeCCCCCCCcccCCCCCCccccccCCCCCCccCCCCCeecCCC-CceecCCcccCCCCCCCCCC
Q psy14262        118 RSPLVTKN-IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSS-NQCVALSKFCDGKPDCSNGE  195 (482)
Q Consensus       118 ~~~~~~~~-~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~~~c~~~~C~~~~f~C~~~-~~Ci~~~~~CDg~~dC~dgs  195 (482)
                      ..+|+|.+ +|||..|+|||..||.|      +|||.   ...|...+|.+.+|+|.++ ++|||..|+|||+.||.|||
T Consensus        26 ~~~f~C~~g~Ci~~~~~CDg~~dC~D------~sDE~---~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgs   96 (791)
T 3m0c_C           26 RNEFQCQDGKCISYKWVCDGSAECQD------GSDES---QETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGS   96 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCCCCCEEehhhcCCCCccCCC------CCccc---ccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCc
Confidence            34688988 99999999999999999      99998   1237778899999999872 48999999999999999999


Q ss_pred             CCCCCCC-CCCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCCceecCCCccCccCCCCCC
Q psy14262        196 DEGPFCN-AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTD  274 (482)
Q Consensus       196 DE~~~C~-~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~~~  274 (482)
                      ||.+ |. ..|.+.+|+|.+|+||+..|+|||..|| .|||||.+|....|.+.+|+|. ++.||+..|+|||..||.  
T Consensus        97 DE~~-C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC-~dgsDE~~C~~~~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~--  171 (791)
T 3m0c_C           97 DEQG-CPPKTCSQDEFRCHDGKCISRQFVCDSDRDC-LDGSDEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCE--  171 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCC-ccCccccCCeEECCCCCEECHHHcCCCcccC-CCCcccccccccccccceeccC-CCccccccccCCCCCcCC--
Confidence            9998 97 5799999999999999999999999999 9999999998778999999999 899999999999999999  


Q ss_pred             CCCCCCCCC--CCC--------CccccCcccccCCCCccCCCCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCCC
Q psy14262        275 DIVDNTDED--WDK--------FHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNE  344 (482)
Q Consensus       275 ~~~dgsDE~--~C~--------~~~C~~~~f~C~~g~~Ci~~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~~  344 (482)
                         ||+||.  +|.        ...|.+.+|+|.++ .||+..|+|||+.||.     |++||.+   |..  ..|.+.+
T Consensus       172 ---dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~-----dgsDE~~---C~~--~~C~~~~  237 (791)
T 3m0c_C          172 ---DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCK-----DKSDEEN---CAV--ATCRPDE  237 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---CCCCcccccCCCccccCCCCCCCCCCcccccCC-ceeccccccCCCCCCC-----CCCCCCC---ccc--cccCCCc
Confidence               999996  673        34688999999977 9999999999999999     9999998   863  5698999


Q ss_pred             cccCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCcc---CCCCcC-CCCCCCC--CccccCCCCccCCCCCcccccc
Q psy14262        345 LRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCE---NLKCSH-KCSPTPR--GAMCFCPAGQNPNKTQCVDADE  418 (482)
Q Consensus       345 f~C~~g~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~~~C~---~~~C~~-~C~~~~~--~~~C~C~~G~~~~~~~C~di~e  418 (482)
                      |+|.++ .||+.+++|||..||.+|+||.. |....+|.   ...|.+ .|++...  .+.+.|+.|+.+....| ++++
T Consensus       238 f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~-C~~~~~C~~~~~~~C~~G~Ci~~~~~Cd~~~dC~dgsDe~~~~C-~~~~  314 (791)
T 3m0c_C          238 FQCSDG-NCIHGSRQCDREYDCKDMSDEVG-CVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC-GTNE  314 (791)
T ss_dssp             -------------------------------------CCSTTCCCCTTSCCCCSSCCSCSSCCSSSSCSCCCTTB-SCCS
T ss_pred             ceecCC-ceEecceecCChhccccccccCc-ccccccccCCCccccCCCcccccccccCCccccccccCcccccc-cccc
Confidence            999998 99999999999999999999998 87432553   334543 5654332  34678999985555567 5788


Q ss_pred             cc-CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCC
Q psy14262        419 CL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQ  460 (482)
Q Consensus       419 C~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~  460 (482)
                      |. ..+.|++.|+|++++|+|.|++||+| .++++|++|+||.
T Consensus       315 C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l-~~g~~C~dideC~  356 (791)
T 3m0c_C          315 CLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQ  356 (791)
T ss_dssp             TTTGGGGCSSEEEECSBSEEEECCTTCEE-ETTTEEECCCCCS
T ss_pred             ccccccCccccccCCCCCcccCCCCCCcc-CCCCccccCcccC
Confidence            97 45789999999999999999999999 6799999999996

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.79  E-value=1.8e-19  Score=144.63  Aligned_cols=76  Identities=41%  Similarity=0.962  Sum_probs=69.9

Q ss_pred             ccCCCCCeecCCCCceecCCcccCCCCCCCCCCCC-CCCCC-CCCCC-CceecCCCCeeccCCCCCCCcCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE-GPFCN-AECTP-GQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN  239 (482)
Q Consensus       163 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE-~~~C~-~~C~~-~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~  239 (482)
                      .+|.+.+|+|.++ +||+.+|+|||+.||.||||| .+ |. ..|.+ .+|+|.+|+||+..|+|||+.|| .|||||.+
T Consensus         3 ~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~~-C~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC-~DgSDE~~   79 (82)
T 2fyj_A            3 RTCPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESAS-CAYPTCFPLTQFTCNNGRCININWRCDNDNDC-GDNSDEAG   79 (82)
T ss_dssp             SSSCTTEEETTSS-CEEETTSSSSCSSSSCSTTTTTSS-CCCSSSCSSSEEECTTSCEEETTCBSSSSBCC-SSSSSCSC
T ss_pred             CCCCCCceEeCCC-CEEeccccCCCcccCCCccccccc-cccccCCCCCceECCCCCeEcHHHccCCCCcC-CCCccccC
Confidence            4688999999987 899999999999999999999 77 86 46864 89999999999999999999999 99999998


Q ss_pred             cc
Q psy14262        240 TC  241 (482)
Q Consensus       240 C~  241 (482)
                      |.
T Consensus        80 C~   81 (82)
T 2fyj_A           80 CS   81 (82)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.76  E-value=1.5e-19  Score=144.09  Aligned_cols=74  Identities=42%  Similarity=1.015  Sum_probs=68.6

Q ss_pred             cCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCeeccCCCCCCCcCCCCCCCCC--CCc
Q psy14262        164 LCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN-AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDE--PNT  240 (482)
Q Consensus       164 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~-~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE--~~C  240 (482)
                      +|.+.+|+|.++ +||+.+|+|||+.||.|||||.+ |. ..|.+.+|+|.+|+|||..|+|||+.|| .|||||  .+|
T Consensus         2 ~C~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~-C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC-~dgsDE~~~~C   78 (80)
T 2fcw_B            2 TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEAS-CPVLTCGPASFQCNSSTCIPQLWACDNDPDC-EDGSDEWPQRC   78 (80)
T ss_dssp             CCCTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTT-HHHHHCCTTEEECTTSCEEEGGGTTSSSCCS-TTCGGGCGGGC
T ss_pred             CCCCCccCCCCC-CEEeeecccCCcccCCCcccccc-cccccCCceeeECCCCCEEecccccCCCcCC-CCCCCcCcccC
Confidence            478899999987 89999999999999999999998 86 4699999999999999999999999999 999999  555

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.76  E-value=1.2e-18  Score=139.74  Aligned_cols=77  Identities=47%  Similarity=0.983  Sum_probs=71.7

Q ss_pred             CCCCCCceecCCCCeeccCCCCCCCcCCCCCCCCC-CCcccccccC-CccccCCCCceecCCCccCccCCCCCCCCCCCC
Q psy14262        203 AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDE-PNTCIHQCFN-GQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT  280 (482)
Q Consensus       203 ~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE-~~C~~~~C~~-~~f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgs  280 (482)
                      ..|++++|+|.+|+|||.+|+|||+.|| .||||| .+|....|.+ .+|+|. +|+||+..|+|||+.||.     |||
T Consensus         3 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC-~DgsDE~~~C~~~~C~~~~~f~C~-~g~CI~~~~~CDG~~DC~-----DgS   75 (82)
T 2fyj_A            3 RTCPPNQFSCASGRCIPISWTCDLDDDC-GDRSDESASCAYPTCFPLTQFTCN-NGRCININWRCDNDNDCG-----DNS   75 (82)
T ss_dssp             SSSCTTEEETTSSCEEETTSSSSCSSSS-CSTTTTTSSCCCSSSCSSSEEECT-TSCEEETTCBSSSSBCCS-----SSS
T ss_pred             CCCCCCceEeCCCCEEeccccCCCcccC-CCccccccccccccCCCCCceECC-CCCeEcHHHccCCCCcCC-----CCc
Confidence            3688999999999999999999999999 999999 7898778965 899999 899999999999999999     999


Q ss_pred             CCCCCC
Q psy14262        281 DEDWDK  286 (482)
Q Consensus       281 DE~~C~  286 (482)
                      ||.+|.
T Consensus        76 DE~~C~   81 (82)
T 2fyj_A           76 DEAGCS   81 (82)
T ss_dssp             SCSCCC
T ss_pred             cccCCC
Confidence            999874

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.74  E-value=6.9e-19  Score=140.30  Aligned_cols=75  Identities=41%  Similarity=0.900  Sum_probs=70.7

Q ss_pred             CCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCCceecCCCccCccCCCCCCCCCCCCCC-
Q psy14262        204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE-  282 (482)
Q Consensus       204 ~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE-  282 (482)
                      .|++++|+|.+|+||+.+|+|||+.|| .|||||.+|....|.+.+|+|. +|+|||..|+|||+.||.     ||||| 
T Consensus         2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC-~DgSDE~~C~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~-----dgsDE~   74 (80)
T 2fcw_B            2 TCSQAEFRCHDGKCISRQFVCDSDRDC-LDGSDEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCE-----DGSDEW   74 (80)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCS-TTCTTTTTHHHHHCCTTEEECT-TSCEEEGGGTTSSSCCST-----TCGGGC
T ss_pred             CCCCCccCCCCCCEEeeecccCCcccC-CCcccccccccccCCceeeECC-CCCEEecccccCCCcCCC-----CCCCcC
Confidence            588999999999999999999999999 9999999998777999999999 899999999999999999     99999 


Q ss_pred             -CCC
Q psy14262        283 -DWD  285 (482)
Q Consensus       283 -~~C  285 (482)
                       .+|
T Consensus        75 ~~~C   78 (80)
T 2fcw_B           75 PQRC   78 (80)
T ss_dssp             GGGC
T ss_pred             cccC
Confidence             555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.43  E-value=6.3e-14  Score=144.95  Aligned_cols=97  Identities=35%  Similarity=0.787  Sum_probs=87.1

Q ss_pred             Ccc--CCCCcCCCCCCCCCccccCCCCc-cCCCCCccccccccCCCCCCceeeecCCceEEecCCCeEECCCCCccccCC
Q psy14262        381 DCE--NLKCSHKCSPTPRGAMCFCPAGQ-NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN  457 (482)
Q Consensus       381 ~C~--~~~C~~~C~~~~~~~~C~C~~G~-~~~~~~C~di~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~did  457 (482)
                      ||.  +..|++.|.+++++|.|.|++|| ..++++|++++||..+++|++.|+|++|+|+|.|.+||.+..++++|++++
T Consensus         2 eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~dideC~~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~   81 (400)
T 3p5b_L            2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG   81 (400)
T ss_dssp             CTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEEECCCCSTTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCCST
T ss_pred             cccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCcccCchhhhccCCCCCccCCCccceeeeccccccccccccceeecc
Confidence            565  24577899999999999999999 556889999999986789999999999999999999999999999999987


Q ss_pred             CCCCCCcEEEeccCCceEEEeccC
Q psy14262        458 VPQDEPASIIFSSTVDIRRIHLNG  481 (482)
Q Consensus       458 ec~~~p~~l~~~~~~~ir~~~l~~  481 (482)
                         ..| +|+|+++++||+|+|++
T Consensus        82 ---~~~-~ll~~~~~~I~~i~l~~  101 (400)
T 3p5b_L           82 ---SIA-YLFFTNRHEVRKMTLDR  101 (400)
T ss_dssp             ---TSC-EEEEEETTEEEEECTTS
T ss_pred             ---ccc-eeEEeccceeEEEccCC
Confidence               556 99999999999999975

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.39  E-value=1.8e-13  Score=140.73  Aligned_cols=97  Identities=36%  Similarity=0.850  Sum_probs=45.6

Q ss_pred             Ccc--CCCCcCCCCCCCCCccccCCCCc--cCCCCCccccccccCCCCCCceeeecCCceEEecCCCeEECCCCCccccC
Q psy14262        381 DCE--NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV  456 (482)
Q Consensus       381 ~C~--~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~di  456 (482)
                      +|.  +.+|+++|.+..++|+|.|++||  .+++++|.+++||...++|++.|+|++|+|+|.|++||.|.+++++|+++
T Consensus         5 ~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~   84 (386)
T 3v65_B            5 NCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKAL   84 (386)
T ss_dssp             -----------------------------------------------CCTTEEC-----CCEECCTTEEECTTSSCEEEC
T ss_pred             cccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeCCcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCc
Confidence            676  45688899988899999999999  45688999999998668999999999999999999999999999999998


Q ss_pred             CCCCCCCcEEEeccCCceEEEeccC
Q psy14262        457 NVPQDEPASIIFSSTVDIRRIHLNG  481 (482)
Q Consensus       457 dec~~~p~~l~~~~~~~ir~~~l~~  481 (482)
                      +   ..+ +|+|+++++|++|.|++
T Consensus        85 ~---~~~-~l~~~~~~~I~~i~~~~  105 (386)
T 3v65_B           85 G---PEP-VLLFANRIDIRQVLPHR  105 (386)
T ss_dssp             S---SCC-EEEEECBSCEEEECTTS
T ss_pred             c---ccc-eeEeecCccceeeccCC
Confidence            7   455 99999999999999875

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.27  E-value=2.3e-12  Score=139.11  Aligned_cols=106  Identities=25%  Similarity=0.436  Sum_probs=78.9

Q ss_pred             CCCCcceeeCC-ceecCceeeCCCCCCCcccCCCCCCccccccCCCCCCccCCCCCeecCCCCceecCCcccCCCCCCCC
Q psy14262        115 GENRSPLVTKN-IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSN  193 (482)
Q Consensus       115 ~~~~~~~~~~~-~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~~~c~~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~d  193 (482)
                      |.....+.|.. .+++..+.+|+..+|.+      .++           ..+...+|+|.++ +||+..++|||+.||+|
T Consensus       170 G~E~sl~~C~~~~~~~~~h~~DagV~C~~------~~~-----------~c~~~~~~~C~~~-~ci~~~~~Cdg~~dC~d  231 (565)
T 2xrc_A          170 GLETSLAECTFTKRRTMGYQDFADVVCYT------QKA-----------DSPMDDFFQCVNG-KYISQMKACDGINDCGD  231 (565)
T ss_dssp             SCCSCGGGSEEECCCCCSSCCCCEEEBCC------C--------------------CBCTTS-CBCCTTSTTSSSCCSSS
T ss_pred             CccCchhhcccCcccccccccCCceeccc------ccc-----------CCCCcCeeECCCC-CccCHHHcCCCcccCCC
Confidence            33344444444 44455555555555554      221           1234466999987 89999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCcc
Q psy14262        194 GEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC  241 (482)
Q Consensus       194 gsDE~~~C~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~  241 (482)
                      +|||.+ |. .|+..+|+|.++.||+..++|||..|| .||+||.+|.
T Consensus       232 ~sDE~~-C~-~c~~~~~~C~~~~C~~~~~~cdG~~dC-~~gsDE~~C~  276 (565)
T 2xrc_A          232 QSDELC-CK-ACQGKGFHCKSGVCIPSQYQCNGEVDC-ITGEDEVGCA  276 (565)
T ss_dssp             SSSSSS-BS-SCSSSCEEETTTEEECGGGTTSSSCCS-SSCTTSSSCC
T ss_pred             Cccccc-cc-ccCCCceecCCCcccCccccCCCcccC-CCCccccCcC
Confidence            999998 96 599999999999999999999999999 9999999885

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.25  E-value=2.9e-14  Score=133.04  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceec--CCCCeeccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCCceecCCCc
Q psy14262        187 GKPDCSNGEDEGPFCNAECTPGQFSC--GMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWL  264 (482)
Q Consensus       187 g~~dC~dgsDE~~~C~~~C~~~~f~C--~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g~Ci~~~~~  264 (482)
                      +..+|.|++||.+ |. .|++++|+|  .+|+|||.+|+|||..|| .|||||.+|....|.+.+|+|.      +    
T Consensus        39 ~~~~c~d~sDE~~-C~-~C~~~~F~C~~~~g~CIp~~~~CDG~~DC-~DgSDE~~C~~~~C~~~~F~c~------~----  105 (215)
T 2gtl_O           39 KAGSLRHRVEELE-DP-SCDEHEHQCGGDDPQCISKLFVCDGHNDC-RNGEDEKDCTLPTKAGDKFIGD------V----  105 (215)
T ss_dssp             HHHHHHHHHHHHS-CC-SSCTTEEECCSSSCCEEEGGGTTSSSCCS-SSCHHHHCCCCSSCTTCEEEEE------E----
T ss_pred             ccccCCcchhhcc-CC-CCCCcceeeCCCCCcCccccccCCCCCcC-CCcccccCCCCCCcCCCceeee------E----
Confidence            3458899999998 85 799999999  789999999999999999 9999999998888999999874      2    


Q ss_pred             cCccCCCCCCCCCCCCCCCCCCCcccc--CcccccCCC--CccCC-----------CCCCCCCCCCCCCCCcCCCCCCCc
Q psy14262        265 CDEEMDCSTDDIVDNTDEDWDKFHQCF--NGQVQCALS--KKCIP-----------HNWLCDEEMDCSTDDIVDNTDEDW  329 (482)
Q Consensus       265 CDg~~dC~~~~~~dgsDE~~C~~~~C~--~~~f~C~~g--~~Ci~-----------~~~~CDg~~DC~~g~~~dgsDE~~  329 (482)
                       ++ ..|.     +..++..|. ..|.  ..+|.|.+.  ..||.           .+|.|||+.+       ++++|..
T Consensus       106 -~~-~~C~-----~~~~~~~c~-~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd-------~gs~el~  170 (215)
T 2gtl_O          106 -CF-DHCT-----KRRPEHMTL-AFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS-------FADHRLT  170 (215)
T ss_dssp             -EE-ESSC-----SSCCSEEEE-EEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE-------TTTTEEE
T ss_pred             -CC-Cccc-----CCCCCCcee-eeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec-------CCcceee
Confidence             22 2377     777777664 3444  366888754  34776           7788988888       3688876

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.25  E-value=1.3e-13  Score=128.77  Aligned_cols=128  Identities=19%  Similarity=0.180  Sum_probs=98.2

Q ss_pred             CCCCCCcccCCCCCCccccccCCCCCCccCCCCCeec--CCCCceecCCcccCCCCCCCCCCCCCCCCC-CCCCCCceec
Q psy14262        136 YNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRC--GSSNQCVALSKFCDGKPDCSNGEDEGPFCN-AECTPGQFSC  212 (482)
Q Consensus       136 g~~dc~dw~d~~~~sdE~~~~~~~c~~~~C~~~~f~C--~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~-~~C~~~~f~C  212 (482)
                      ...+|.+      ++||.     +|.  +|.+.+|+|  .++ +|||.+|+|||..||.|||||.+ |. .+|.+.+|+|
T Consensus        39 ~~~~c~d------~sDE~-----~C~--~C~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~~-C~~~~C~~~~F~c  103 (215)
T 2gtl_O           39 KAGSLRH------RVEEL-----EDP--SCDEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEKD-CTLPTKAGDKFIG  103 (215)
T ss_dssp             HHHHHHH------HHHHH-----SCC--SSCTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHHC-CCCSSCTTCEEEE
T ss_pred             ccccCCc------chhhc-----cCC--CCCCcceeeCCCCC-cCccccccCCCCCcCCCcccccC-CCCCCcCCCceee
Confidence            3457888      99999     783  699999999  565 99999999999999999999998 97 5799999998


Q ss_pred             CCCCeeccCCCCCCCcCCCCCCCCCCCccccccc--CCccccCCC--Cceec-----------CCCccCccCCCCCCCCC
Q psy14262        213 GMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCF--NGQVQCALS--KKCIP-----------HNWLCDEEMDCSTDDIV  277 (482)
Q Consensus       213 ~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~--~~~f~C~~~--g~Ci~-----------~~~~CDg~~dC~~~~~~  277 (482)
                      .     +..      ..| .+++++..|. ..|.  ..+|.|...  ..||.           .+|.|||+.+       
T Consensus       104 ~-----~~~------~~C-~~~~~~~~c~-~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd-------  163 (215)
T 2gtl_O          104 D-----VCF------DHC-TKRRPEHMTL-AFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS-------  163 (215)
T ss_dssp             E-----EEE------ESS-CSSCCSEEEE-EEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE-------
T ss_pred             e-----ECC------Ccc-cCCCCCCcee-eeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec-------
Confidence            3     222      247 7778877664 3444  467888832  24777           7888999888       


Q ss_pred             CCCCCCCCCCccccCcccccC
Q psy14262        278 DNTDEDWDKFHQCFNGQVQCA  298 (482)
Q Consensus       278 dgsDE~~C~~~~C~~~~f~C~  298 (482)
                      ++++|..|.++.+...+|+|.
T Consensus       164 ~gs~el~~~pp~~~~l~f~C~  184 (215)
T 2gtl_O          164 FADHRLTIHPPEEDGLGLVGE  184 (215)
T ss_dssp             TTTTEEEECCSSTTTEEEEEE
T ss_pred             CCcceeeecCCCCCCceeEEE
Confidence            578888776666666677775

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.20  E-value=6.6e-12  Score=135.47  Aligned_cols=102  Identities=27%  Similarity=0.453  Sum_probs=84.2

Q ss_pred             CeecCCCCceecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCcccccccCC
Q psy14262        169 ELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNG  248 (482)
Q Consensus       169 ~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~  248 (482)
                      .|.|..+ .+++..+.+|+..+|.+.+++   |   +...+|+|.+|.||+..++|||..|| .|++||.+|..  |.+.
T Consensus       175 l~~C~~~-~~~~~~h~~DagV~C~~~~~~---c---~~~~~~~C~~~~ci~~~~~Cdg~~dC-~d~sDE~~C~~--c~~~  244 (565)
T 2xrc_A          175 LAECTFT-KRRTMGYQDFADVVCYTQKAD---S---PMDDFFQCVNGKYISQMKACDGINDC-GDQSDELCCKA--CQGK  244 (565)
T ss_dssp             GGGSEEE-CCCCCSSCCCCEEEBCCC---------------CBCTTSCBCCTTSTTSSSCCS-SSSSSSSSBSS--CSSS
T ss_pred             hhhcccC-cccccccccCCceeccccccC---C---CCcCeeECCCCCccCHHHcCCCcccC-CCCcccccccc--cCCC
Confidence            3566555 477778999999999877544   2   23456999999999999999999999 99999999963  9999


Q ss_pred             ccccCCCCceecCCCccCccCCCCCCCCCCCCCCCCCC
Q psy14262        249 QVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK  286 (482)
Q Consensus       249 ~f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE~~C~  286 (482)
                      +|+|. ++.||+..++|||..||.     +|+||.+|.
T Consensus       245 ~~~C~-~~~C~~~~~~cdG~~dC~-----~gsDE~~C~  276 (565)
T 2xrc_A          245 GFHCK-SGVCIPSQYQCNGEVDCI-----TGEDEVGCA  276 (565)
T ss_dssp             CEEET-TTEEECGGGTTSSSCCSS-----SCTTSSSCC
T ss_pred             ceecC-CCcccCccccCCCcccCC-----CCccccCcC
Confidence            99999 889999999999999999     999999886

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.19  E-value=3.8e-12  Score=107.24  Aligned_cols=85  Identities=35%  Similarity=0.739  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCCCCCcc--CCCCcCCCCCCCCCccccCCCCc-cCCCCCccccccccCCCCCCceeeecCCceEEecCCCe
Q psy14262        368 NGEDEGPFCNNKADCE--NLKCSHKCSPTPRGAMCFCPAGQ-NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGY  444 (482)
Q Consensus       368 dgsDE~~~C~~~~~C~--~~~C~~~C~~~~~~~~C~C~~G~-~~~~~~C~di~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy  444 (482)
                      ++..... |.++ +|.  +++|+++|++++++|+|.|++|| ..+++.|++|+||....+|.+.|+|++|+|+|.|++||
T Consensus        20 ~~~~~~~-Cd~n-eC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~~g~~C~dideC~~~~~C~~~C~n~~gsy~C~C~~Gy   97 (107)
T 2w2n_E           20 NLYFQGA-MGTN-ECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF   97 (107)
T ss_dssp             CCCCSCC-BSCC-GGGTGGGGCSSEEECCSBSCEEECCTTCEEETTTEEEC-----------------------------
T ss_pred             CCcCCCC-CcCc-cCcCCCCCCCCEeEeCCCCeEEECCCCccccCCCccccccccCCCCCcCCeeecCCCCEEEECCCCc
Confidence            3344444 7666 887  46788899999999999999999 44568899999998557899999999999999999999


Q ss_pred             EECCCCCccc
Q psy14262        445 TLRPDGKSCT  454 (482)
Q Consensus       445 ~l~~d~~tC~  454 (482)
                      ++..++++|+
T Consensus        98 ~~~~d~~~C~  107 (107)
T 2w2n_E           98 QLDPHTKACK  107 (107)
T ss_dssp             ----------
T ss_pred             eECCCCCccC
Confidence            9998888874

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.13  E-value=3.2e-11  Score=97.61  Aligned_cols=76  Identities=37%  Similarity=0.833  Sum_probs=65.1

Q ss_pred             CccCCC--C-cCCCCCCCCCccccCCCCc--cCCCCCccccccccCCCCCCceeeecCCceEEec--CCCeEECCCCCcc
Q psy14262        381 DCENLK--C-SHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSC--TEGYTLRPDGKSC  453 (482)
Q Consensus       381 ~C~~~~--C-~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~eC~~~~~Cs~~C~n~~gsy~C~C--~~Gy~l~~d~~tC  453 (482)
                      +|...+  | ..+|++++++|+|.|++||  ..+++.|++++||. .++|.+.|+|++|+|+|.|  .+||.+..++++|
T Consensus         5 eC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~-~~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~~~C   83 (87)
T 1z6c_A            5 ECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS-ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC   83 (87)
T ss_dssp             SSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHH-HSCCSSEECCCSSSCCEECCSSSCCBCCTTSSSC
T ss_pred             cccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeC-CCCCCCEEEccCCCEEEECCCCcCCcccCCCCcc
Confidence            666433  6 3489999999999999999  44578999999997 4679999999999999999  6999999999999


Q ss_pred             ccCC
Q psy14262        454 TAVN  457 (482)
Q Consensus       454 ~did  457 (482)
                      ++|+
T Consensus        84 ~di~   87 (87)
T 1z6c_A           84 EVVS   87 (87)
T ss_dssp             BCCC
T ss_pred             eECc
Confidence            8875

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.12  E-value=7.9e-11  Score=103.20  Aligned_cols=116  Identities=23%  Similarity=0.643  Sum_probs=86.3

Q ss_pred             cccCCCcccCCCCccccc--ccccCCCCCCCCCCCCCCCCC--CCCCccCCCCcC--CCCCCCCCccccCCCCccCCCCC
Q psy14262        339 LCHPNELRCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFCN--NKADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQ  412 (482)
Q Consensus       339 ~C~~~~f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C~--~~~~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~  412 (482)
                      +|.....+|.++++|++.  +++|    .|+.|+.... |.  ++ +|...+|.+  +|++..++|+|.|++||  .+..
T Consensus         7 eC~~~~~~C~~~g~C~~~~g~~~C----~C~~Gy~G~~-C~~~~~-~C~~~~C~~~~~C~~~~g~~~C~C~~G~--~G~~   78 (135)
T 2vj3_A            7 ECSLGANPCEHAGKCINTLGSFEC----QCLQGYTGPR-CEIDVN-ECVSNPCQNDATCLDQIGEFQCICMPGY--EGVH   78 (135)
T ss_dssp             TTTSSSCSSSTTCEEEECSSSEEE----ECCTTEESTT-SCEECC-TTTTCCCCSSCEEEECSSCEEEECCTTE--ESSS
T ss_pred             cccCCCCCCCCCCEeECCCCCEEE----ECCCCCcCCc-ccccCc-cCCCCCCCCCCEEeCCCCCceeeCCCCC--cCCc
Confidence            454445678887799876  7889    8999987766 86  44 888778864  79999999999999999  5667


Q ss_pred             cc-ccccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCccc-cCCCCCCCCcEEEe
Q psy14262        413 CV-DADECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCT-AVNVPQDEPASIIF  468 (482)
Q Consensus       413 C~-di~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~-didec~~~p~~l~~  468 (482)
                      |. ++++|. ..+|.  +.|+++.++|+|.|++||.    ++.|. +|++|+..+ .+.+
T Consensus        79 C~~~~~~C~-~~~C~~~g~C~~~~g~~~C~C~~G~~----G~~C~~~i~~C~~~~-~~c~  132 (135)
T 2vj3_A           79 CEVNTDECA-SSPCLHNGRCLDKINEFQCECPTGFT----GHLCQVDLHHILDAQ-KMVW  132 (135)
T ss_dssp             SCEECCTTT-TCCSTTTCEEEECSSCEEEECCTTEE----SSSSCEECC-----------
T ss_pred             ceecCCccc-CCCcCCCCEeECCCCCeEEECCCCCc----CCccCccCccccCCC-ccee
Confidence            85 788997 45784  6899999999999999998    77895 899998776 4433

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.12  E-value=2e-11  Score=107.97  Aligned_cols=109  Identities=29%  Similarity=0.625  Sum_probs=85.9

Q ss_pred             ccCCCCcccccccccCCCCCCCCCCCCC--------CCCCCCCCccCC---CCcC--CCCCCCCCccccCCCCc-cC-C-
Q psy14262        346 RCGSSNQCVALSKFCDGKPDCSNGEDEG--------PFCNNKADCENL---KCSH--KCSPTPRGAMCFCPAGQ-NP-N-  409 (482)
Q Consensus       346 ~C~~g~~Ci~~~~~CDg~~dC~dgsDE~--------~~C~~~~~C~~~---~C~~--~C~~~~~~~~C~C~~G~-~~-~-  409 (482)
                      .|.++++|++. ++|    .|+.|+...        ..|...++|...   +|.+  +|++++++|+|.|++|| .. . 
T Consensus         8 ~C~~~~~C~~~-~~C----~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~   82 (143)
T 2bou_A            8 WCPQDSSCVNA-TAC----RCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGA   82 (143)
T ss_dssp             TCCTTEEESSS-SCE----EECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCC
T ss_pred             cCCCCCEEcCC-CEE----eCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCc
Confidence            57666678764 777    788886431        238633489843   7873  89999999999999999 22 1 


Q ss_pred             -------CCCcccccccc-CCCCCC--ceeeecCCceEEecCCCeEECCCCCccccCCCC
Q psy14262        410 -------KTQCVDADECL-IDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVP  459 (482)
Q Consensus       410 -------~~~C~di~eC~-~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec  459 (482)
                             +..|++++||. ...+|.  +.|+|++|+|+|.|++||++..+++.|.++++|
T Consensus        83 ~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~~~C  142 (143)
T 2bou_A           83 KTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC  142 (143)
T ss_dssp             SCBSSGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTTCCB
T ss_pred             cccccCCCCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccCCcc
Confidence                   45899999998 457895  799999999999999999999999999988865

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.09  E-value=1.7e-11  Score=97.30  Aligned_cols=66  Identities=21%  Similarity=0.445  Sum_probs=56.6

Q ss_pred             CCCCccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC--CCC--CCCCCCceecCC--CCeeccCCCC
Q psy14262        159 SHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP--FCN--AECTPGQFSCGM--GKCIPESWKC  224 (482)
Q Consensus       159 ~c~~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~--~C~--~~C~~~~f~C~~--g~Ci~~~~~C  224 (482)
                      +|+...|.+.+|+|.++++|||.+|+|||+.||.|||||.+  .|.  .+|.+.+|+|.+  +.||+..++.
T Consensus         3 ~C~~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~g   74 (80)
T 2kny_A            3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRK   74 (80)
T ss_dssp             SCSSCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTT
T ss_pred             CCCCCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHH
Confidence            57778899999999865599999999999999999999984  265  679999999998  6899887654

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.07  E-value=3.8e-11  Score=106.79  Aligned_cols=78  Identities=33%  Similarity=0.719  Sum_probs=68.6

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCcccccccc-CCCCCCcee-eecCCceEEecCCCeEECCCCCccccC
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDADECL-IDGSCDQTC-TNTHLSYVCSCTEGYTLRPDGKSCTAV  456 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~di~eC~-~~~~Cs~~C-~n~~gsy~C~C~~Gy~l~~d~~tC~di  456 (482)
                      +|..++|.+  +|++++++|+|.|++||  .+..|.++++|. .+++|.+.| +|+.|+|+|.|++||.|..++++|.++
T Consensus        50 eC~~~pC~n~g~C~~~~~~y~C~C~~G~--~G~~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~  127 (146)
T 1x7a_L           50 QCEPNPCLNGGLCKDDINSYECWCQVGF--EGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA  127 (146)
T ss_dssp             CCSSCSSCTTCEEEECSSCEEEECCSSE--ESTTTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEEC
T ss_pred             cCCCCCCCCCCEeECCCCCEEEecCCCC--cCCcCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCC
Confidence            676667765  89999999999999999  577899999998 357898899 999999999999999999999999998


Q ss_pred             CCCC
Q psy14262        457 NVPQ  460 (482)
Q Consensus       457 dec~  460 (482)
                      ++..
T Consensus       128 ~~~p  131 (146)
T 1x7a_L          128 VPFP  131 (146)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            8643

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.06  E-value=7.7e-11  Score=95.07  Aligned_cols=74  Identities=34%  Similarity=0.712  Sum_probs=61.8

Q ss_pred             CccC--CCCcC-CCCCCCCCccccCCCCcc---CCCCCcccccccc-CCCCCC-ceeeecCCceEEecCCCeEECCCCCc
Q psy14262        381 DCEN--LKCSH-KCSPTPRGAMCFCPAGQN---PNKTQCVDADECL-IDGSCD-QTCTNTHLSYVCSCTEGYTLRPDGKS  452 (482)
Q Consensus       381 ~C~~--~~C~~-~C~~~~~~~~C~C~~G~~---~~~~~C~di~eC~-~~~~Cs-~~C~n~~gsy~C~C~~Gy~l~~d~~t  452 (482)
                      ||..  ++|.+ +|++++++|+|.|++||.   ..++.|++|+||. .+..|. +.|+|++|+|+|.|++||++..++++
T Consensus         5 eC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~   84 (86)
T 1lmj_A            5 ECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISA   84 (86)
T ss_dssp             TTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCC
T ss_pred             cccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCc
Confidence            6663  33765 899999999999999993   3478999999998 455675 69999999999999999999988887


Q ss_pred             cc
Q psy14262        453 CT  454 (482)
Q Consensus       453 C~  454 (482)
                      |.
T Consensus        85 Ci   86 (86)
T 1lmj_A           85 CI   86 (86)
T ss_dssp             CC
T ss_pred             cC
Confidence            73

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.04  E-value=1.1e-10  Score=82.02  Aligned_cols=38  Identities=42%  Similarity=0.908  Sum_probs=35.2

Q ss_pred             CcccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          2 IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         2 ~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      ...|.+++|+|. ||+|||..|+|||+.||+     |+|||..|
T Consensus         3 ~~~C~~~~F~C~-~g~CI~~~~~CDG~~DC~-----DgSDE~~c   40 (45)
T 1d2l_A            3 PPQCQPGEFACA-NSRCIQERWKCDGDNDCL-----DNSDEAPA   40 (45)
T ss_dssp             CCBTTBTCEEET-TTEEECGGGTTTSSCTTT-----TCSTTSTT
T ss_pred             CCcCCCCceEcC-CCCeEehhhccCCCCCCC-----CCCCCCCC
Confidence            468999999998 899999999999999998     99999865

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.03  E-value=1.1e-10  Score=78.65  Aligned_cols=36  Identities=36%  Similarity=0.791  Sum_probs=33.4

Q ss_pred             ccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         4 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      .|.+++|+|. +|+|||..|+|||+.||+     |+|||..|
T Consensus         1 ~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~-----DgsDE~~C   36 (37)
T 1ajj_A            1 PCSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDEENC   36 (37)
T ss_dssp             CCCTTCEECT-TSCEECGGGTTSSSCCST-----TCGGGTTC
T ss_pred             CCCCCceEcC-CCCeechhhccCCCCCCC-----CCccccCC
Confidence            4889999998 899999999999999998     99999865

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.03  E-value=1.4e-10  Score=80.49  Aligned_cols=39  Identities=38%  Similarity=0.877  Sum_probs=35.2

Q ss_pred             cccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCccccc
Q psy14262          3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK   46 (482)
Q Consensus         3 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~~   46 (482)
                      ..|.+++|+|.++|+|||..|+|||+.||+     |+|||..|.
T Consensus         2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~-----DgSDE~~C~   40 (42)
T 1cr8_A            2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCM-----DSSDEKSCE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSS-----SSTTTTTCC
T ss_pred             CCCCCCceEeCCCCeEcChhhcCCCCcCCC-----CCCcccCCC
Confidence            479999999985699999999999999998     999998763

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.02  E-value=1.5e-10  Score=80.71  Aligned_cols=39  Identities=31%  Similarity=0.586  Sum_probs=34.9

Q ss_pred             CcccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          2 IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         2 ~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      ...|.+++|+|.++++|||..|+|||+.||+     |+|||.+|
T Consensus         4 ~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~-----DgSDE~~C   42 (43)
T 2jm4_A            4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCG-----NQADEDNC   42 (43)
T ss_dssp             SCSCCTTEEECSSSSCEEEGGGTTSSCCCSS-----SCCTTSSC
T ss_pred             CCCCCCCeeECCCCCeEcCHhhccCCCCCCC-----CCcccCCC
Confidence            4679999999993399999999999999998     99999865

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.00  E-value=2.7e-10  Score=91.00  Aligned_cols=72  Identities=35%  Similarity=0.828  Sum_probs=60.6

Q ss_pred             Ccc-CCCCcC-CCCCCCCCccccCCCCccCCCCCccccccccCCCCCC-ceeeecCCceEEecCCCeEECCCCCcc
Q psy14262        381 DCE-NLKCSH-KCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCD-QTCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       381 ~C~-~~~C~~-~C~~~~~~~~C~C~~G~~~~~~~C~di~eC~~~~~Cs-~~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      +|. ..+|.+ +|++++++|+|.|++||..+++.|++++||....+|. +.|+|+.|+|+|.|++||++..+ ++|
T Consensus         7 eC~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~g~~C~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~~-~~C   81 (82)
T 1emn_A            7 ECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPM-MTC   81 (82)
T ss_dssp             SSSSTTSCSSSEECCCSSCCCEECCTTEEEETTEEEECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCSS-SCC
T ss_pred             cCCCCCCcCCCEEEecCCCEEEECCCCeECCCCccCCcccccCCCCCCCCEeECCCCCEEeECCCCeEeCCC-Ccc
Confidence            676 367765 8999999999999999943578899999997556784 69999999999999999998766 555

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.99  E-value=1e-10  Score=84.38  Aligned_cols=40  Identities=35%  Similarity=0.871  Sum_probs=36.2

Q ss_pred             cccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCccccccc
Q psy14262          3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYF   48 (482)
Q Consensus         3 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~~~~   48 (482)
                      ..|.++||+|. ||+|||..|+|||+.||+     |+|||..+..+
T Consensus         5 ~~C~~~~F~C~-nG~CIp~~~~CDG~~DC~-----DgSDE~~~~~~   44 (52)
T 2m0p_A            5 ASCLDTQYTCD-NHQCISKNWVCDTDNDCG-----DGSDEKNCNST   44 (52)
T ss_dssp             CSSCSSEEECT-TCCEEETTSTTSSSCSSS-----SCHHHHSCCCC
T ss_pred             CCCCCCceECC-CCCEEecCccCCCCCCCC-----CCCccccchhh
Confidence            57999999998 899999999999999998     99999876543

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.99  E-value=1.7e-10  Score=80.83  Aligned_cols=38  Identities=45%  Similarity=0.960  Sum_probs=33.3

Q ss_pred             CcccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          2 IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         2 ~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      ...|.+++|+|. |++|||..|+|||+.||+     |+|||..|
T Consensus         5 ~~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~-----DgSDE~~C   42 (44)
T 3a7q_B            5 AKECEKDQFQCR-NERCIPSVWRCDEDDDCL-----DHSDEDDC   42 (44)
T ss_dssp             ---CCTTEEECT-TSCEEEGGGTTSSSCCSS-----SSTTTSCC
T ss_pred             CCCCCCCceEcC-CCCEeChhhccCCCCCCC-----CCccccCC
Confidence            357999999998 899999999999999998     99999876

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.97  E-value=3e-10  Score=96.57  Aligned_cols=66  Identities=26%  Similarity=0.507  Sum_probs=58.1

Q ss_pred             CCCCCCCCccccCCCCccCCCCCcccc---cccc-CCCCCCceeeecCCceEEecCCCeEECCCCCccccCC
Q psy14262        390 KCSPTPRGAMCFCPAGQNPNKTQCVDA---DECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN  457 (482)
Q Consensus       390 ~C~~~~~~~~C~C~~G~~~~~~~C~di---~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~did  457 (482)
                      +|+++.++|+|.|++||  .+..|+++   ++|. .++.|.+.|+|+.++|+|.|++||++..++++|.++.
T Consensus        27 ~C~~~~~~y~C~C~~G~--~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~~   96 (114)
T 1aut_L           27 TCIDGIGSFSCDCRSGW--EGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV   96 (114)
T ss_dssp             EECCCSSCCCEEECTTE--ESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCCCCCCcEeeCCCCC--cCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcCc
Confidence            78999999999999999  55668764   4687 4678989999999999999999999999999999876

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.95  E-value=3.3e-10  Score=81.51  Aligned_cols=39  Identities=33%  Similarity=0.835  Sum_probs=35.3

Q ss_pred             CcccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          2 IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         2 ~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      ...|.+++|+|..+++|||..|+|||+.||+     |+|||..|
T Consensus         4 ~~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~-----DgSDE~~C   42 (50)
T 2knx_A            4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCA-----DGADESIA   42 (50)
T ss_dssp             TCTTCTTEEEETTTTEEEETTTTTSSSCCST-----TCGGGSGG
T ss_pred             CCCCCCCcEEcCCCCeEcChhhcCCCCCCCC-----CCCccccc
Confidence            3579999999965899999999999999998     99999875

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.95  E-value=3.1e-10  Score=80.74  Aligned_cols=38  Identities=39%  Similarity=0.851  Sum_probs=34.4

Q ss_pred             cccCCCCeeeCC----CCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          3 HQCFNGQVQCAL----SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         3 ~~C~~~~f~C~~----~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      ..|.+++|+|.+    +++|||..|+|||+.||+     |+|||..|
T Consensus         5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~-----DgSDE~~C   46 (47)
T 1k7b_A            5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDEWGC   46 (47)
T ss_dssp             -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSS-----SSTTTGGG
T ss_pred             CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCC-----CCcccCCC
Confidence            579999999985    799999999999999998     99999876

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.93  E-value=3.8e-10  Score=79.08  Aligned_cols=38  Identities=42%  Similarity=1.002  Sum_probs=34.9

Q ss_pred             CcccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          2 IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         2 ~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      ...|.+++|+|. ||+|||..|+|||+.||+     |+|||..+
T Consensus         2 ~~~C~~~~F~C~-~g~CI~~~~~CDg~~DC~-----DgSDE~~~   39 (44)
T 1j8e_A            2 SHSCSSTQFKCN-SGRCIPEHWTCDGDNDCG-----DYSDETHA   39 (44)
T ss_dssp             CSSSCTTEEECT-TSCEEEGGGTTSSSCCSS-----SSGGGSHH
T ss_pred             CCCCCCCceEeC-CCCeEecCcccCCCCCCC-----CCCCCCCc
Confidence            468999999998 899999999999999998     99999854

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.92  E-value=2.8e-10  Score=105.77  Aligned_cols=75  Identities=36%  Similarity=0.785  Sum_probs=37.6

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCccc-c-cccc-CCCCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVD-A-DECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~d-i-~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      +|..++|.+  +|++..++|.|.|++||  .+..|.+ + ++|. .+++|.+.|+++.|+|+|.|++||.|..++++|.+
T Consensus        44 eC~~~pC~ngg~C~n~~g~y~C~C~~Gf--~G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~  121 (195)
T 1nfu_B           44 QCETSPCQNQGKCKDGLGEYTCTCLEGF--EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP  121 (195)
T ss_dssp             ---------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             ccCCCCCCCCCEeECCCCCeeEeCCCCc--eeccccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCcccc
Confidence            677677876  89999999999999999  5788986 5 8898 45789889999999999999999999999999998


Q ss_pred             CC
Q psy14262        456 VN  457 (482)
Q Consensus       456 id  457 (482)
                      ++
T Consensus       122 ~~  123 (195)
T 1nfu_B          122 TG  123 (195)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.91  E-value=8.8e-10  Score=76.39  Aligned_cols=38  Identities=37%  Similarity=0.905  Sum_probs=28.6

Q ss_pred             cCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCCCCC
Q psy14262        164 LCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN  202 (482)
Q Consensus       164 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~  202 (482)
                      .|...+|+|.+.++||+..|+|||+.||.|||||.+ |.
T Consensus         3 ~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~-C~   40 (42)
T 1cr8_A            3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS-CE   40 (42)
T ss_dssp             CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT-CC
T ss_pred             CCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccC-CC
Confidence            466778888754478888888888888888888876 53

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.90  E-value=5.6e-10  Score=76.09  Aligned_cols=36  Identities=39%  Similarity=0.890  Sum_probs=32.8

Q ss_pred             cCCCCeeeCC-CCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          5 CFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         5 C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      |.+++|+|.+ +++|||..|+|||+.||+     |+|||.+|
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~-----dgsDE~~C   37 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCD-----SGEDEENC   37 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCST-----TTTTSTTC
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCc-----CCcccccC
Confidence            7889999984 499999999999999998     99999876

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.89  E-value=4.7e-10  Score=79.80  Aligned_cols=40  Identities=38%  Similarity=0.806  Sum_probs=35.9

Q ss_pred             CcccCCCCeeeCC----CCCeecCccccCCCCCCCCCCCCCCCCccccc
Q psy14262          2 IHQCFNGQVQCAL----SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK   46 (482)
Q Consensus         2 ~~~C~~~~f~C~~----~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~~   46 (482)
                      ...|.+++|+|.+    +++|||..|+|||+.||.     |+|||..|.
T Consensus         2 ~~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~-----DgSDE~~C~   45 (47)
T 1jrf_A            2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDEWGCG   45 (47)
T ss_dssp             CCCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSS-----SSCTTHHHH
T ss_pred             CCCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCC-----CCcccccCC
Confidence            3579999999985    799999999999999998     999998763

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.88  E-value=9e-10  Score=96.41  Aligned_cols=75  Identities=36%  Similarity=0.785  Sum_probs=37.4

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCccc-c-cccc-CCCCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVD-A-DECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~d-i-~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      +|..++|.+  +|+++.++|+|.|++||  .+..|.+ + ++|. .+++|.+.|+++.++|+|.|++||+|..++++|.+
T Consensus        44 ~C~~~pC~n~g~C~~~~~~y~C~C~~G~--~G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B           44 QCETSPCQNQGKCKDGLGEYTCTCLEGF--EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP  121 (134)
T ss_dssp             ---------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             cCCCCCCCCcCCcccCCCCEEeeCCCCc--cCCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCc
Confidence            676667765  89999999999999999  5778987 6 8898 35789889999999999999999999999999998


Q ss_pred             CC
Q psy14262        456 VN  457 (482)
Q Consensus       456 id  457 (482)
                      ++
T Consensus       122 ~~  123 (134)
T 2vh0_B          122 TG  123 (134)
T ss_dssp             SS
T ss_pred             CC
Confidence            86

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=98.87  E-value=9.6e-10  Score=74.05  Aligned_cols=34  Identities=41%  Similarity=0.851  Sum_probs=18.1

Q ss_pred             CCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       165 C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      |.+.+|+|.++ +||+.+|+|||+.||.|||||.+
T Consensus         2 C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~   35 (37)
T 1ajj_A            2 CSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCceEcCCC-CeechhhccCCCCCCCCCccccC
Confidence            44455555544 45555555555555555555554

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.87  E-value=1.8e-10  Score=98.54  Aligned_cols=99  Identities=33%  Similarity=0.745  Sum_probs=76.0

Q ss_pred             ccCCCCccccc---ccccCCCCCCCCCCCCCC----CCCCCCCccCCCCcCCCCCCCCCccccCCCCc-cCCCCCccccc
Q psy14262        346 RCGSSNQCVAL---SKFCDGKPDCSNGEDEGP----FCNNKADCENLKCSHKCSPTPRGAMCFCPAGQ-NPNKTQCVDAD  417 (482)
Q Consensus       346 ~C~~g~~Ci~~---~~~CDg~~dC~dgsDE~~----~C~~~~~C~~~~C~~~C~~~~~~~~C~C~~G~-~~~~~~C~di~  417 (482)
                      +|.+  +|++.   +|+|    .|+.|+....    .|..  +|.+++|.++|++ .++|+|.|++|| ...++.|++|+
T Consensus        11 pC~~--~C~~~~~g~y~C----~C~~Gy~g~~~~~~~C~~--~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~g~~C~did   81 (118)
T 1dx5_I           11 NCEY--QCQPLDQTSYLC----VCAEGFAPIPHEPHRCQM--FCNQTACPADCDP-NTQASCECPEGYILDDGFICTDID   81 (118)
T ss_dssp             CCSS--EEEECSSSCEEE----ECCTTEEEETTEEEEEEE--CCCSSEEECEECT-TSTTCEECCTTEEEETTTEEEECC
T ss_pred             CCCC--CCCCCCCCCEEe----ECCCCccccCCCCCcccc--ccCCCCCCCcccC-CCCeEeECCCCccCCCCCcccccc
Confidence            5653  77765   6888    8988864432    1332  3556778788988 589999999999 22288999999


Q ss_pred             cccCCCCCCceeeecCCceEEecCCCeEECCC-CCcc
Q psy14262        418 ECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPD-GKSC  453 (482)
Q Consensus       418 eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d-~~tC  453 (482)
                      ||...++|.+.|+|++|+|+|.|++||++..+ +++|
T Consensus        82 eC~~~~~C~~~C~n~~g~y~C~C~~G~~g~~~~g~~C  118 (118)
T 1dx5_I           82 ECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC  118 (118)
T ss_dssp             HHHHCSSCSSEEEECSSSEEEEECSSSSCEEEESCCC
T ss_pred             ccCCCCCCcCeEEeCCCCEEEECCCCCccCCCCCCCC
Confidence            99854789899999999999999999987765 5554

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.86  E-value=1.1e-09  Score=96.78  Aligned_cols=81  Identities=30%  Similarity=0.712  Sum_probs=67.4

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCccc-cccc---c-CCCCCCceeeecCC-ceEEecCCCeEECCCCCc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVD-ADEC---L-IDGSCDQTCTNTHL-SYVCSCTEGYTLRPDGKS  452 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~d-i~eC---~-~~~~Cs~~C~n~~g-sy~C~C~~Gy~l~~d~~t  452 (482)
                      +|..++|.+  +|+++.++|+|.|++||  .++.|.+ +++|   . ..+.|.+.|+++.+ +|+|.|++||.|..++++
T Consensus        49 ~C~~~pC~n~g~C~~~~g~y~C~C~~G~--~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~  126 (142)
T 2c4f_L           49 QCASSPCQNGGSCKDQLQSYICFCLPAF--EGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS  126 (142)
T ss_dssp             GGGGCCCCTTCEEEEETTEEEEECCTTE--ESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSC
T ss_pred             cCcCCCcCCCCEEeCCCCCEEeeCCCCc--cCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCC
Confidence            666667765  79999999999999999  5778976 5664   3 35778889999999 999999999999999999


Q ss_pred             cccCCC--CCCCC
Q psy14262        453 CTAVNV--PQDEP  463 (482)
Q Consensus       453 C~dide--c~~~p  463 (482)
                      |.++++  |.+.|
T Consensus       127 C~~~~e~pCg~~p  139 (142)
T 2c4f_L          127 CTPTVEYPCGKIP  139 (142)
T ss_dssp             EEESSSSCTTCCT
T ss_pred             CCCCCccCCCCCC
Confidence            999886  44444

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.86  E-value=6.6e-10  Score=79.33  Aligned_cols=38  Identities=37%  Similarity=0.731  Sum_probs=34.9

Q ss_pred             cccCCCCeeeCCCC-CeecCccccCCCCCCCCCCCCCCCCccccc
Q psy14262          3 HQCFNGQVQCALSK-KCIPHNWLCDEEMDCSTDDIVDNTDEDWDK   46 (482)
Q Consensus         3 ~~C~~~~f~C~~~~-~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~~   46 (482)
                      ..|.+++|+|. |+ +|||..|+|||+.||.     |+|||..|.
T Consensus         5 ~~C~~~~F~C~-~g~~CI~~~~~CDG~~DC~-----DgSDE~~C~   43 (48)
T 2i1p_A            5 LNCTSAQFKCA-DGSSCINSRYRCDGVYDCR-----DNSDEAGCP   43 (48)
T ss_dssp             CCCCSSSEECS-SSSCEECGGGSSSSSCCSS-----SSHHHHSSC
T ss_pred             CCCCCCeeECC-CCCEeCCHhhcCCCCCCCC-----CCcccccCC
Confidence            57999999999 77 8999999999999998     999998774

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.86  E-value=5.2e-10  Score=79.89  Aligned_cols=42  Identities=26%  Similarity=0.710  Sum_probs=30.2

Q ss_pred             CCCCccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCCCCC
Q psy14262        159 SHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN  202 (482)
Q Consensus       159 ~c~~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~  202 (482)
                      .|+ ..|.+.+|+|.++.+||+.+|+|||+.||.|||||.+ |.
T Consensus         2 ~C~-~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~-C~   43 (48)
T 2i1p_A            2 AMV-LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG-CP   43 (48)
T ss_dssp             CSC-CCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHS-SC
T ss_pred             CCC-CCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCccccc-CC
Confidence            344 4577777777776568877788888888888887776 64

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=98.85  E-value=7e-10  Score=87.94  Aligned_cols=61  Identities=30%  Similarity=0.593  Sum_probs=52.1

Q ss_pred             CCCCCCceecC-CCCeeccCCCCCCCcCCCCCCCCCCC---cc-cccccCCccccCCC--CceecCCCcc
Q psy14262        203 AECTPGQFSCG-MGKCIPESWKCDGFVDCLEDGSDEPN---TC-IHQCFNGQVQCALS--KKCIPHNWLC  265 (482)
Q Consensus       203 ~~C~~~~f~C~-~g~Ci~~~~~CDg~~dC~~dgsDE~~---C~-~~~C~~~~f~C~~~--g~Ci~~~~~C  265 (482)
                      ..|.+++|+|. +|+|||.+|+|||+.|| .|||||..   |. ...|.+.+|+|. +  +.||+..+..
T Consensus         7 ~~C~~~~f~C~~~g~CIp~~~~CDg~~DC-~DgsDE~~~~~C~~~~~C~~~~f~c~-~~~~~ci~~~~~g   74 (80)
T 2kny_A            7 KTCGPSSFSCPGTHVCVPERWLCDGDKDC-ADGADESIAAGCLYNSTGSGSGSGST-EELRVRLASHLRK   74 (80)
T ss_dssp             CCCSSSEEECTTSSCEEEHHHHTTSSCCS-SSSTTTSGGGTCSSSSTTTTCSSCHH-HHHHHHTTTTTTT
T ss_pred             CCCCCCceecCCCCeEcChhhcCCCCCCC-CCCCccccccCCCCCcccCcccchhh-hHHHHHHHHHHHH
Confidence            56889999998 68999999999999999 99999984   65 356888999998 6  6888876654

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.82  E-value=2e-09  Score=73.33  Aligned_cols=37  Identities=49%  Similarity=1.108  Sum_probs=28.2

Q ss_pred             CCCCCeecCC-CCceecCCcccCCCCCCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDEGPFCN  202 (482)
Q Consensus       165 C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~dgsDE~~~C~  202 (482)
                      |.+.+|+|.+ .++|||.+|+|||+.||.|||||.+ |.
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~-C~   38 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN-CG   38 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT-CC
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCccccc-CC
Confidence            4567888876 2478888888888888888888876 53

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.82  E-value=2e-09  Score=75.58  Aligned_cols=36  Identities=39%  Similarity=0.918  Sum_probs=29.2

Q ss_pred             ccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       163 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      ..|.+.+|+|.++ +||+.+|+|||+.||.|||||.+
T Consensus         4 ~~C~~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~   39 (45)
T 1d2l_A            4 PQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAP   39 (45)
T ss_dssp             CBTTBTCEEETTT-EEECGGGTTTSSCTTTTCSTTST
T ss_pred             CcCCCCceEcCCC-CeEehhhccCCCCCCCCCCCCCC
Confidence            3567788888876 78888888888888888888886

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.81  E-value=1.7e-10  Score=106.57  Aligned_cols=139  Identities=23%  Similarity=0.593  Sum_probs=100.7

Q ss_pred             ccCCCCccC--CCCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCC--CcccCCCCccccc-------ccccCCCC
Q psy14262        296 QCALSKKCI--PHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPN--ELRCGSSNQCVAL-------SKFCDGKP  364 (482)
Q Consensus       296 ~C~~g~~Ci--~~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~--~f~C~~g~~Ci~~-------~~~CDg~~  364 (482)
                      .|.++ +|+  +.+|+|    .|..||.+.  +...   |.. ...|...  ..+|.++++|++.       +|+|    
T Consensus        12 pC~ng-~C~~~~g~~~C----~C~~G~~g~--~~~~---C~~-id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C----   76 (186)
T 1z1y_A           12 ICXNG-QLVQMSNHFXC----MCNEGLVHL--SENT---CEE-XNECXXETLGXACGEFGQCIENPDPAQVNMYXC----   76 (186)
T ss_dssp             CCBTE-EEEECSSCEEE----EECTTEEEE--ETTE---EEE-CCCCSGGGTTSEEETTEEEEECSSTTSSCSEEE----
T ss_pred             CCCCC-EeECCCCCeEe----ECCCCCccC--CCCc---cCC-CCcccCCCCCCCCCCCCEeecCCCCcCCCCEEC----
Confidence            46655 787  467889    799666443  3333   642 3567543  4578887789865       4788    


Q ss_pred             CCCCCCCCCC-CCCCCCCccCCCCcC--CCC----CCCCCccccCCCCccC---CCCCcccc--ccccCCCCC---Ccee
Q psy14262        365 DCSNGEDEGP-FCNNKADCENLKCSH--KCS----PTPRGAMCFCPAGQNP---NKTQCVDA--DECLIDGSC---DQTC  429 (482)
Q Consensus       365 dC~dgsDE~~-~C~~~~~C~~~~C~~--~C~----~~~~~~~C~C~~G~~~---~~~~C~di--~eC~~~~~C---s~~C  429 (482)
                      .|+.|+.... .|.++ +|...+|.+  +|+    ++.++|+|.|++||..   ++..|+++  ++|.  .+|   .+.|
T Consensus        77 ~C~~G~~g~~~~C~~d-~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~--~~C~~~~~~C  153 (186)
T 1z1y_A           77 GCIEGYTLXEDTCVLD-VCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ--LXCNTDNEVC  153 (186)
T ss_dssp             EECTTEEEETTEEEEG-GGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC--CCCCTTTEEE
T ss_pred             CCCCCCccCCCCCCCC-cCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc--ccccccCcce
Confidence            8999875442 15555 888777863  677    8888999999999932   66889876  7887  478   4689


Q ss_pred             eecCCceEEecCCCeEECCCCCc
Q psy14262        430 TNTHLSYVCSCTEGYTLRPDGKS  452 (482)
Q Consensus       430 ~n~~gsy~C~C~~Gy~l~~d~~t  452 (482)
                      +++.++|+|.|++||++....+.
T Consensus       154 ~n~~g~y~C~C~~G~~g~~~~~~  176 (186)
T 1z1y_A          154 XNVEGVYXCQCMEGFTFDXEXNV  176 (186)
T ss_dssp             EEETTEEEEEECTTCEEETTTTE
T ss_pred             ecCCCCeeeECCCCCccCccccc
Confidence            99999999999999998655444

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.81  E-value=2.2e-09  Score=77.19  Aligned_cols=42  Identities=33%  Similarity=0.789  Sum_probs=32.7

Q ss_pred             ccCCCCCeecC-CCCceecCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCG-SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTP  207 (482)
Q Consensus       163 ~~C~~~~f~C~-~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~C~~  207 (482)
                      ..|.+.+|+|. ++ +||+..|+|||+.||.|||||.+ |. .|.+
T Consensus         5 ~~C~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~~-C~-~C~~   47 (50)
T 2knx_A            5 KTCGPSSFSCPGTH-VCVPERWLCDGDKDCADGADESI-AA-GCLY   47 (50)
T ss_dssp             CTTCTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGSG-GG-TCCC
T ss_pred             CCCCCCcEEcCCCC-eEcChhhcCCCCCCCCCCCcccc-cc-CCCC
Confidence            35778888885 55 89998899999999999999887 64 4543

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=98.80  E-value=3.2e-09  Score=73.91  Aligned_cols=37  Identities=32%  Similarity=0.728  Sum_probs=20.8

Q ss_pred             ccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       163 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      ..|.+.+|+|.++++||+..|+|||+.||.|||||.+
T Consensus         5 ~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (43)
T 2jm4_A            5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN   41 (43)
T ss_dssp             CSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred             CCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence            4455555555552255555555555555555555554

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.80  E-value=3e-09  Score=74.49  Aligned_cols=35  Identities=46%  Similarity=1.012  Sum_probs=19.7

Q ss_pred             CCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCc
Q psy14262        205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNT  240 (482)
Q Consensus       205 C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C  240 (482)
                      |...+|+|.+|+||+..|+|||+.|| .|||||.+|
T Consensus         8 C~~~~f~C~~g~CI~~~~~CDg~~DC-~DgSDE~~C   42 (44)
T 3a7q_B            8 CEKDQFQCRNERCIPSVWRCDEDDDC-LDHSDEDDC   42 (44)
T ss_dssp             CCTTEEECTTSCEEEGGGTTSSSCCS-SSSTTTSCC
T ss_pred             CCCCceEcCCCCEeChhhccCCCCCC-CCCccccCC
Confidence            44555555555555555555555555 555555544

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.78  E-value=1.2e-09  Score=78.71  Aligned_cols=36  Identities=31%  Similarity=0.756  Sum_probs=25.8

Q ss_pred             ccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       163 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      ..|.+.+|+|.+| +||+.+|+|||..||.|||||.+
T Consensus         5 ~~C~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~   40 (52)
T 2m0p_A            5 ASCLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKN   40 (52)
T ss_dssp             CSSCSSEEECTTC-CEEETTSTTSSSCSSSSCHHHHS
T ss_pred             CCCCCCceECCCC-CEEecCccCCCCCCCCCCCcccc
Confidence            3466677777766 67777777777777777777765

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.73  E-value=1.7e-08  Score=100.73  Aligned_cols=78  Identities=31%  Similarity=0.731  Sum_probs=68.6

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc-ccccccC--CCCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV-DADECLI--DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~-di~eC~~--~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      +|.+.+|.+  +|.++.++|+|.|++||  .++.|+ +++||..  ..+|.+.|+|+.++|+|.|++||.+..++++|.+
T Consensus         7 ~C~~~pC~~~g~C~~~~~~~~C~C~~g~--~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~   84 (317)
T 3h5c_B            7 PCISQPCLHNGSCQDSIWGYTCTCSPGY--EGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVP   84 (317)
T ss_dssp             CTTSCCCTTTCCCCCCSSSCCCCCSSSC--CSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEE
T ss_pred             cCCCCCCCCCCEeECCCCCeEEECCCCC--cCCccccCcccCCCCCCCCCcCccccCCCeeEEecccccccccccccccc
Confidence            566666765  79999999999999999  678898 9999984  3789889999999999999999999999999999


Q ss_pred             CCCCC
Q psy14262        456 VNVPQ  460 (482)
Q Consensus       456 idec~  460 (482)
                      +++|.
T Consensus        85 ~~~c~   89 (317)
T 3h5c_B           85 HDQCA   89 (317)
T ss_dssp             CSSCC
T ss_pred             ccccc
Confidence            98874

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.72  E-value=5e-09  Score=74.41  Aligned_cols=37  Identities=38%  Similarity=0.928  Sum_probs=20.7

Q ss_pred             ccCCCCCeecCC----CCceecCCcccCCCCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCGS----SNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       163 ~~C~~~~f~C~~----~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      ..|.+.+|+|.+    .++|||.+|+|||+.||.|||||.+
T Consensus         5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~   45 (47)
T 1k7b_A            5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   45 (47)
T ss_dssp             -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence            445556666652    2256666666666666666666654

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.70  E-value=1.3e-08  Score=89.62  Aligned_cols=99  Identities=28%  Similarity=0.746  Sum_probs=74.7

Q ss_pred             ccCCCCccccc----ccccCCCCCCCCCCCCCCCCCC-------------CCCccCCCCcC--CCC-------CCCCCcc
Q psy14262        346 RCGSSNQCVAL----SKFCDGKPDCSNGEDEGPFCNN-------------KADCENLKCSH--KCS-------PTPRGAM  399 (482)
Q Consensus       346 ~C~~g~~Ci~~----~~~CDg~~dC~dgsDE~~~C~~-------------~~~C~~~~C~~--~C~-------~~~~~~~  399 (482)
                      +|.++++|++.    +++|    .|+.|+.... |..             .++|...+|.+  +|+       ++.++|+
T Consensus         7 pC~~~g~C~~~~~~g~~~C----~C~~G~~G~~-C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~   81 (143)
T 4d90_A            7 PCENGGICLPGLADGSFSC----ECPDGFTDPN-CSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV   81 (143)
T ss_dssp             CCGGGCEEEC-----CCEE----ECCTTCCTTT-TCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEE
T ss_pred             cCCCCCEeeCCCCCCCEEe----ECCCCCCCCC-CccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCeE
Confidence            57766688764    4778    7888876655 642             12566666765  677       6678999


Q ss_pred             ccCCCCccCCCCCcc-ccccccCCCCC--CceeeecCCceEEecCCCeEECCCCCccccC
Q psy14262        400 CFCPAGQNPNKTQCV-DADECLIDGSC--DQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV  456 (482)
Q Consensus       400 C~C~~G~~~~~~~C~-di~eC~~~~~C--s~~C~n~~gsy~C~C~~Gy~l~~d~~tC~di  456 (482)
                      |.|++||  .+..|+ ++++|. ..+|  .+.|+++.++|+|.|++||+    +..|..+
T Consensus        82 C~C~~G~--~G~~C~~~i~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~----G~~c~~~  134 (143)
T 4d90_A           82 CKCPRGF--NGIHCQHNINECE-VEPCKNGGICTDLVANYSCECPGEFM----GRNCQYK  134 (143)
T ss_dssp             EECCTTE--ESTTSCEECCTTT-TCCSCTTCEEEEETTEEEEECCTTCB----STTSCBC
T ss_pred             eECcCCC--cCCCcccCCCcCC-CCCCCCCCEeECCCCCeEeECCCCCc----cCCceec
Confidence            9999999  678897 999997 4567  36999999999999999998    5566543

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.68  E-value=1.4e-08  Score=78.26  Aligned_cols=49  Identities=35%  Similarity=0.653  Sum_probs=44.2

Q ss_pred             ccccccc-CCCCCCceeeecCC-ceEEecCCCeEECCCCCccccCCCCCCC
Q psy14262        414 VDADECL-IDGSCDQTCTNTHL-SYVCSCTEGYTLRPDGKSCTAVNVPQDE  462 (482)
Q Consensus       414 ~di~eC~-~~~~Cs~~C~n~~g-sy~C~C~~Gy~l~~d~~tC~didec~~~  462 (482)
                      .+++||. .++.|+|+|+|++| +|+|.|++||+|..++++|.+++||.-.
T Consensus         3 ~d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~Cg   53 (69)
T 1kli_L            3 DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCG   53 (69)
T ss_dssp             SCCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSCTT
T ss_pred             cccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCcccccCC
Confidence            5789997 56889999999999 8999999999999999999999987643

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.68  E-value=1.3e-08  Score=74.80  Aligned_cols=47  Identities=38%  Similarity=0.743  Sum_probs=41.6

Q ss_pred             cccc-CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCCCCC
Q psy14262        417 DECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEP  463 (482)
Q Consensus       417 ~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~~p  463 (482)
                      +||. ..+.|+|.|+|++|+|+|.|++||+|..++++|.+|+||.-..
T Consensus         2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~cg~   49 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGK   49 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSCTTC
T ss_pred             ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCccccCCC
Confidence            5776 4578999999999999999999999999999999999986544

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.63  E-value=8.4e-09  Score=72.16  Aligned_cols=35  Identities=54%  Similarity=1.207  Sum_probs=23.6

Q ss_pred             CCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCC
Q psy14262        204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN  239 (482)
Q Consensus       204 ~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~  239 (482)
                      .|++.+|+|.+|+|||..|+|||+.|| .|||||.+
T Consensus         4 ~C~~~~F~C~~g~CI~~~~~CDg~~DC-~DgSDE~~   38 (44)
T 1j8e_A            4 SCSSTQFKCNSGRCIPEHWTCDGDNDC-GDYSDETH   38 (44)
T ss_dssp             SSCTTEEECTTSCEEEGGGTTSSSCCS-SSSGGGSH
T ss_pred             CCCCCceEeCCCCeEecCcccCCCCCC-CCCCCCCC
Confidence            355666777666777777777777777 67777654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.60  E-value=2.9e-08  Score=100.33  Aligned_cols=62  Identities=40%  Similarity=0.916  Sum_probs=47.8

Q ss_pred             cccccCCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCCCCCcEEEeccCCceEEEeccC
Q psy14262        416 ADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNG  481 (482)
Q Consensus       416 i~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~~p~~l~~~~~~~ir~~~l~~  481 (482)
                      ++||..++.|+|.|+|++|+|+|.|++||.|.+++++|++++   ..| +|+|+++++|++++|++
T Consensus         1 i~ec~~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~---~~~-~ll~~~~~~I~~i~~~g   62 (349)
T 3v64_C            1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG---PEP-VLLFANRIDIRQVLPHR   62 (349)
T ss_dssp             --------CCSSEECCC---CCEECCTTEEECTTSSCEEESS---SCC-EEEEECBSCEEEECTTS
T ss_pred             CcccCCCCCCcCeeecCCCCeEEECCCCccCCCCCCcccccc---cCc-eeEeecccceEEEeCCC
Confidence            478876689999999999999999999999999999999988   456 99999999999999876

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.59  E-value=1.3e-08  Score=90.24  Aligned_cols=106  Identities=31%  Similarity=0.654  Sum_probs=73.6

Q ss_pred             CcccCCCCccccc--ccccCCCCCCCCCCCCCC---CCCCCC-----------Ccc--CCCCc--CCCCCCCCC------
Q psy14262        344 ELRCGSSNQCVAL--SKFCDGKPDCSNGEDEGP---FCNNKA-----------DCE--NLKCS--HKCSPTPRG------  397 (482)
Q Consensus       344 ~f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~---~C~~~~-----------~C~--~~~C~--~~C~~~~~~------  397 (482)
                      ..+|.++ .|++.  +|+|    .|+.|+....   .|....           .|.  ...|.  ..|.+..++      
T Consensus         9 ~~pC~ng-~C~n~~g~y~C----~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~~g~~~g~~C   83 (147)
T 2w86_A            9 SSPCING-VCKNSPGSFIC----ECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPC   83 (147)
T ss_dssp             GCCSBTS-EEEEETTEEEE----ECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTTTCSEETTTT
T ss_pred             CCCCCCC-EeECCCCCEEe----ECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCccccCCccccCcCcccCCCc
Confidence            3578776 89986  8999    8999964221   132110           111  01111  123333332      


Q ss_pred             ----ccccCCCCc-cCCCCCcccccccc-CCCCCC-ceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        398 ----AMCFCPAGQ-NPNKTQCVDADECL-IDGSCD-QTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       398 ----~~C~C~~G~-~~~~~~C~di~eC~-~~~~Cs-~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                          |.|.|++|| ...++.|++|+||. .++.|. ++|+|++|+|+|.|++||++..++++|.
T Consensus        84 ~~c~~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~  147 (147)
T 2w86_A           84 TLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL  147 (147)
T ss_dssp             EECCCCTTTCTTEEEEETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred             ccCCCcccCCCccccCCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence                788999999 33578899999998 567796 4999999999999999999999998873

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.59  E-value=1e-08  Score=72.81  Aligned_cols=35  Identities=54%  Similarity=1.336  Sum_probs=19.6

Q ss_pred             CCCCceecC-----CCCeeccCCCCCCCcCCCCCCCCCCCc
Q psy14262        205 CTPGQFSCG-----MGKCIPESWKCDGFVDCLEDGSDEPNT  240 (482)
Q Consensus       205 C~~~~f~C~-----~g~Ci~~~~~CDg~~dC~~dgsDE~~C  240 (482)
                      |.+.+|+|.     +++|||.+|+|||+.|| .|||||.+|
T Consensus         5 C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC-~DgSDE~~C   44 (47)
T 1jrf_A            5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDC-DDGRDEWGC   44 (47)
T ss_dssp             CCCCCSCSSSCSCCCTTTSGGGGSSSSSCCS-SSSCTTHHH
T ss_pred             CCCCeeECCCCCCCCCeEcCHhhcCCCCcCC-CCCcccccC
Confidence            455555555     44555555555555555 555555544

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.58  E-value=1.2e-08  Score=91.90  Aligned_cols=103  Identities=33%  Similarity=0.665  Sum_probs=68.6

Q ss_pred             ccCCCCccccc--ccccCCCCCCCCCCC----CCCCCCCCCC--ccC--CCC----cCCCCCCCC---------------
Q psy14262        346 RCGSSNQCVAL--SKFCDGKPDCSNGED----EGPFCNNKAD--CEN--LKC----SHKCSPTPR---------------  396 (482)
Q Consensus       346 ~C~~g~~Ci~~--~~~CDg~~dC~dgsD----E~~~C~~~~~--C~~--~~C----~~~C~~~~~---------------  396 (482)
                      +|.++ .|++.  +|.|    .|+.|+-    +.. |...++  |..  .+|    ..+|++..+               
T Consensus        11 ~C~~~-~C~n~~gsy~C----~C~~Gy~~~~~g~~-C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~   84 (162)
T 1uzk_A           11 TCISG-NCVNTPGSYIC----DCPPDFELNPTRVG-CVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA   84 (162)
T ss_dssp             SSBTS-EEEEETTEEEE----ECCTTCEECTTSSB-EECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCE
T ss_pred             CCCCC-EeECCCCCEEE----eCCCCCeECCCCCc-ccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCC
Confidence            56644 78876  7888    7888873    444 763224  642  222    224544433               


Q ss_pred             --------------CccccCCC--Cc--cCCCCCcccccccc-CCCCCC-ceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        397 --------------GAMCFCPA--GQ--NPNKTQCVDADECL-IDGSCD-QTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       397 --------------~~~C~C~~--G~--~~~~~~C~di~eC~-~~~~Cs-~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                                    +|+|.|++  ||  ...+..|.+|+||. .+++|. +.|+|++|+|+|.|++||++..++++|+
T Consensus        85 ~~~~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~C~  162 (162)
T 1uzk_A           85 WGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD  162 (162)
T ss_dssp             ETTTTEECCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred             cCCCcccCCCCCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCccC
Confidence                          44555554  55  23346789999998 456786 5999999999999999999999999884

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.55  E-value=5.1e-09  Score=96.59  Aligned_cols=109  Identities=28%  Similarity=0.610  Sum_probs=83.3

Q ss_pred             CcccCCCCccccc--ccccCCCCCCCCCCCC---CCCCCCCCCcc----CCCCcC--CCCCCC-----CCccccCCCCcc
Q psy14262        344 ELRCGSSNQCVAL--SKFCDGKPDCSNGEDE---GPFCNNKADCE----NLKCSH--KCSPTP-----RGAMCFCPAGQN  407 (482)
Q Consensus       344 ~f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE---~~~C~~~~~C~----~~~C~~--~C~~~~-----~~~~C~C~~G~~  407 (482)
                      ..+|.++ +|++.  +++|    .|+.|+..   .. |...++|.    ..+|.+  +|+++.     ++|+|.|++||.
T Consensus        10 ~~pC~ng-~C~~~~g~~~C----~C~~G~~g~~~~~-C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~   83 (186)
T 1z1y_A           10 DTICXNG-QLVQMSNHFXC----MCNEGLVHLSENT-CEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYT   83 (186)
T ss_dssp             TCCCBTE-EEEECSSCEEE----EECTTEEEEETTE-EEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEE
T ss_pred             CCCCCCC-EeECCCCCeEe----ECCCCCccCCCCc-cCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCc
Confidence            3478877 88876  7888    89988743   24 76334887    677874  899988     899999999993


Q ss_pred             CCCCCccccccccCCCCCC--ceee----ecCCceEEecCCCeEECC-CCCccccC--CCCC
Q psy14262        408 PNKTQCVDADECLIDGSCD--QTCT----NTHLSYVCSCTEGYTLRP-DGKSCTAV--NVPQ  460 (482)
Q Consensus       408 ~~~~~C~di~eC~~~~~Cs--~~C~----n~~gsy~C~C~~Gy~l~~-d~~tC~di--dec~  460 (482)
                      .....|. +++|. ..+|.  +.|+    ++.++|+|.|++||++.. +++.|+++  ++|.
T Consensus        84 g~~~~C~-~d~C~-~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~  143 (186)
T 1z1y_A           84 LXEDTCV-LDVCQ-YXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ  143 (186)
T ss_dssp             EETTEEE-EGGGT-TCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC
T ss_pred             cCCCCCC-CCcCc-CCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc
Confidence            3334676 78997 34574  5787    888999999999999855 67899876  7776

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.55  E-value=1.1e-07  Score=102.71  Aligned_cols=111  Identities=26%  Similarity=0.589  Sum_probs=86.2

Q ss_pred             cccCCCCccccc---ccccCCCCCCCCCCCC--CCCCCCCCCccCCC--CcC-----CCCCCCCCcccc-CCCCccC---
Q psy14262        345 LRCGSSNQCVAL---SKFCDGKPDCSNGEDE--GPFCNNKADCENLK--CSH-----KCSPTPRGAMCF-CPAGQNP---  408 (482)
Q Consensus       345 f~C~~g~~Ci~~---~~~CDg~~dC~dgsDE--~~~C~~~~~C~~~~--C~~-----~C~~~~~~~~C~-C~~G~~~---  408 (482)
                      .+|.++.+|++.   +|+|-   .|+.|+..  .. |...+||...+  |.+     +|+++.++|+|. |++||..   
T Consensus         9 nPC~~gg~C~n~~~Gsy~C~---~C~~GytGdg~~-CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c   84 (634)
T 1yo8_A            9 NPCFPGAQCSSFPDGSWSCG---FCPVGFLGNGTH-CEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQP   84 (634)
T ss_dssp             CCSCTTCCEEECTTSCEEEC---CCCTTBCSCSSS-CCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCC
T ss_pred             CCCCCCCEEecCCCCCeECC---cCCCccCCCCCC-ccccccccCCCCcccCCccccceeeccCceecccCCCCcccCcc
Confidence            368887789875   37782   48888754  44 87444898554  875     799999999998 9999921   


Q ss_pred             ----------CCCCcccccccc-CCCCCC--ceeeecC----CceEEecCCCeEECCCCCccc---cCCCCCC
Q psy14262        409 ----------NKTQCVDADECL-IDGSCD--QTCTNTH----LSYVCSCTEGYTLRPDGKSCT---AVNVPQD  461 (482)
Q Consensus       409 ----------~~~~C~di~eC~-~~~~Cs--~~C~n~~----gsy~C~C~~Gy~l~~d~~tC~---didec~~  461 (482)
                                .++.|.++++|. ..++|.  +.|+++.    ++|+|.|++||..  ++++|.   +|+||..
T Consensus        85 ~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~G--dG~~Ce~d~DiDeC~~  155 (634)
T 1yo8_A           85 VGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG--DGLICGEDSDLDGWPN  155 (634)
T ss_dssp             EESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEE--SSSSEEECTTSSSSCS
T ss_pred             ccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccc--cCcccccccCcccccC
Confidence                      345699999998 357895  6899999    9999999999984  468896   7888853

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.54  E-value=6.5e-09  Score=88.85  Aligned_cols=78  Identities=26%  Similarity=0.663  Sum_probs=61.6

Q ss_pred             CccCCCCcCCCCCC-CCCccccCCCCccCCCCCcccccccc---CCCCCCceeeecCCceEEecCCCeEECCCCCccccC
Q psy14262        381 DCENLKCSHKCSPT-PRGAMCFCPAGQNPNKTQCVDADECL---IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV  456 (482)
Q Consensus       381 ~C~~~~C~~~C~~~-~~~~~C~C~~G~~~~~~~C~di~eC~---~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~di  456 (482)
                      +|.+++|.++|+++ .++|+|.|++||...  .+ ++++|.   ..++|.+.|++ .++|+|.|++||++.. +++|++|
T Consensus         6 eC~~~pC~~~C~~~~~g~y~C~C~~Gy~g~--~~-~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~-g~~C~di   80 (118)
T 1dx5_I            6 PCFRANCEYQCQPLDQTSYLCVCAEGFAPI--PH-EPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDD-GFICTDI   80 (118)
T ss_dssp             GGGGCCCSSEEEECSSSCEEEECCTTEEEE--TT-EEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEET-TTEEEEC
T ss_pred             cCCCCCCCCCCCCCCCCCEEeECCCCcccc--CC-CCCccccccCCCCCCCcccC-CCCeEeECCCCccCCC-CCccccc
Confidence            78778898899999 899999999999211  11 344443   25677788998 5999999999999876 8899999


Q ss_pred             CCCCC-CC
Q psy14262        457 NVPQD-EP  463 (482)
Q Consensus       457 dec~~-~p  463 (482)
                      +||+. .|
T Consensus        81 deC~~~~~   88 (118)
T 1dx5_I           81 DECENGGF   88 (118)
T ss_dssp             CHHHHCSS
T ss_pred             cccCCCCC
Confidence            99876 44

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=98.49  E-value=6.9e-08  Score=69.74  Aligned_cols=41  Identities=37%  Similarity=0.712  Sum_probs=37.4

Q ss_pred             CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCCC
Q psy14262        421 IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQD  461 (482)
Q Consensus       421 ~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~  461 (482)
                      .++.|+|.|+|++|+|+|.|++||+|..++++|.+|+|+.-
T Consensus         4 ~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~pC   44 (51)
T 1kig_L            4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPC   44 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSSCT
T ss_pred             CCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCcccC
Confidence            35789999999999999999999999999999999998753

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.49  E-value=1.5e-07  Score=101.63  Aligned_cols=82  Identities=34%  Similarity=0.732  Sum_probs=67.9

Q ss_pred             CccCCCCcC--CCCCCCCC-ccc-cCCCCccCCCCCcccccccc-CCCCCCc-----eeeecCCceEEe-cCCCeEECC-
Q psy14262        381 DCENLKCSH--KCSPTPRG-AMC-FCPAGQNPNKTQCVDADECL-IDGSCDQ-----TCTNTHLSYVCS-CTEGYTLRP-  448 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~-~~C-~C~~G~~~~~~~C~di~eC~-~~~~Cs~-----~C~n~~gsy~C~-C~~Gy~l~~-  448 (482)
                      +|..++|.+  +|+++.++ |+| .|++||...+++|++++||. .++.|.+     .|+|+.++|+|. |++||+... 
T Consensus         5 eC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c   84 (634)
T 1yo8_A            5 GCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQP   84 (634)
T ss_dssp             GGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCC
T ss_pred             ccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCcc
Confidence            677677875  89988865 999 99999965668999999998 4556954     899999999998 999999653 


Q ss_pred             ----------CCCccccCCCCCCC
Q psy14262        449 ----------DGKSCTAVNVPQDE  462 (482)
Q Consensus       449 ----------d~~tC~didec~~~  462 (482)
                                ++++|++|+||...
T Consensus        85 ~g~g~~~~~~dg~~C~dideC~~~  108 (634)
T 1yo8_A           85 VGVGLEAAKTEKQVCEPENPCKDK  108 (634)
T ss_dssp             EESSSHHHHSCCCCEEECCTTTTT
T ss_pred             ccccccccccCCCcccccccccCC
Confidence                      45679999999853

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=98.47  E-value=1.9e-07  Score=81.44  Aligned_cols=76  Identities=30%  Similarity=0.763  Sum_probs=62.2

Q ss_pred             Ccc--CCCCcC--CCCCCCCCccccCCCCccCCCCCcc-ccccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCcc
Q psy14262        381 DCE--NLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV-DADECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       381 ~C~--~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~-di~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      +|.  .++|.+  +|+++.++|+|.|++||  .+..|. ++++|. ..+|.  +.|+++.++|+|.|++||.    +..|
T Consensus         7 eC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy--~G~~C~~~~~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~----G~~C   79 (135)
T 2vj3_A            7 ECSLGANPCEHAGKCINTLGSFECQCLQGY--TGPRCEIDVNECV-SNPCQNDATCLDQIGEFQCICMPGYE----GVHC   79 (135)
T ss_dssp             TTTSSSCSSSTTCEEEECSSSEEEECCTTE--ESTTSCEECCTTT-TCCCCSSCEEEECSSCEEEECCTTEE----SSSS
T ss_pred             cccCCCCCCCCCCEeECCCCCEEEECCCCC--cCCcccccCccCC-CCCCCCCCEEeCCCCCceeeCCCCCc----CCcc
Confidence            666  567765  79999999999999999  556784 789997 45673  6899999999999999998    6678


Q ss_pred             c-cCCCCCCCC
Q psy14262        454 T-AVNVPQDEP  463 (482)
Q Consensus       454 ~-didec~~~p  463 (482)
                      . ++++|...|
T Consensus        80 ~~~~~~C~~~~   90 (135)
T 2vj3_A           80 EVNTDECASSP   90 (135)
T ss_dssp             CEECCTTTTCC
T ss_pred             eecCCcccCCC
Confidence            5 788887654

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=98.46  E-value=1.1e-07  Score=69.18  Aligned_cols=41  Identities=37%  Similarity=0.720  Sum_probs=37.3

Q ss_pred             CCCCCCceeeecCC-ceEEecCCCeEECCCCCccccCCCCCC
Q psy14262        421 IDGSCDQTCTNTHL-SYVCSCTEGYTLRPDGKSCTAVNVPQD  461 (482)
Q Consensus       421 ~~~~Cs~~C~n~~g-sy~C~C~~Gy~l~~d~~tC~didec~~  461 (482)
                      .++.|+|.|+|++| +|+|.|++||+|..++++|.+++||.-
T Consensus         5 ~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec~c   46 (53)
T 2bz6_L            5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC   46 (53)
T ss_dssp             GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSCT
T ss_pred             CCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCccccC
Confidence            35789999999999 799999999999999999999998753

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.37  E-value=2e-07  Score=86.31  Aligned_cols=57  Identities=26%  Similarity=0.698  Sum_probs=45.0

Q ss_pred             ccCCCCCeecC-CCCceecCCcccCCCCCCCCCCCCC--CCCC-C-CCCCCce--ecCCCCeecc
Q psy14262        163 VLCHPNELRCG-SSNQCVALSKFCDGKPDCSNGEDEG--PFCN-A-ECTPGQF--SCGMGKCIPE  220 (482)
Q Consensus       163 ~~C~~~~f~C~-~~~~Ci~~~~~CDg~~dC~dgsDE~--~~C~-~-~C~~~~f--~C~~g~Ci~~  220 (482)
                      ..|.+.+|+|. +.++||+..|+|||..||+|||||.  + |. . +|.+.+|  +|.++.|+..
T Consensus        51 ~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~-C~~~~tc~~~qF~g~~~~d~C~kr  114 (220)
T 2gtl_N           51 THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV-CDTSVVKAGNVFSGTSTWHGCLAR  114 (220)
T ss_dssp             CSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGG-GCGGGGCTTCEEEEEEEECSSCCC
T ss_pred             CCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCccc-CCCCCccCCcceeeEecCChhhcC
Confidence            45888999996 3348999999999999999999996  6 86 3 6766654  5777777643

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.33  E-value=5e-07  Score=73.37  Aligned_cols=79  Identities=25%  Similarity=0.604  Sum_probs=61.2

Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCcCCCCCCCCCccccCCCCccCCCCCcc--ccccccCCCCCC--ceeeecC--CceEE
Q psy14262        365 DCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCV--DADECLIDGSCD--QTCTNTH--LSYVC  438 (482)
Q Consensus       365 dC~dgsDE~~~C~~~~~C~~~~C~~~C~~~~~~~~C~C~~G~~~~~~~C~--di~eC~~~~~Cs--~~C~n~~--gsy~C  438 (482)
                      .|.+|..... |.++ +|...+    |++..++|+|.|++||.    .|+  ++++|. ..+|.  ..|+++.  ++|+|
T Consensus         5 ~C~~g~~g~~-c~~~-~c~~~p----C~n~~~~y~C~C~~G~~----~C~~~~~~~C~-~~pC~ngg~C~~~~~~~~~~C   73 (91)
T 1tpg_A            5 ICRDEKTQMI-YQQH-QSWLRP----VLRSNRVEYCWCNSGRA----QCHSVPVKSCS-EPRCFNGGTCQQALYFSDFVC   73 (91)
T ss_dssp             CCBCSSSCCB-CCSS-CEEEEE----CSSSSCEEEEECSSSCC----BCCEECEEECS-SCCSCTTCEEEEESSSSCEEE
T ss_pred             ECCCCCcCCe-ECCC-cccCCc----cccCCCCcEeECCCCCc----ccccCcCCccc-CCCCCCCCEeecCCCCCCeEe
Confidence            6777776655 7655 665433    56778899999999993    685  789997 46784  5899988  99999


Q ss_pred             ecCCCeEECCCCCccc-cCCC
Q psy14262        439 SCTEGYTLRPDGKSCT-AVNV  458 (482)
Q Consensus       439 ~C~~Gy~l~~d~~tC~-dide  458 (482)
                      .|++||.    ++.|+ +|+|
T Consensus        74 ~C~~G~~----G~~Ce~~ide   90 (91)
T 1tpg_A           74 QCPEGFA----GKSCEIDTRA   90 (91)
T ss_dssp             ECCTTCB----SSSCCBCSSC
T ss_pred             ECCCCCc----CCcCCcCCCC
Confidence            9999997    78886 6764

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.25  E-value=1e-06  Score=77.24  Aligned_cols=76  Identities=33%  Similarity=0.826  Sum_probs=55.3

Q ss_pred             CccCCCCcC--CCCCCC--CCccccCCCCccCCCCCccc-------------cccccCCCCCC--ceee-------ecCC
Q psy14262        381 DCENLKCSH--KCSPTP--RGAMCFCPAGQNPNKTQCVD-------------ADECLIDGSCD--QTCT-------NTHL  434 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~--~~~~C~C~~G~~~~~~~C~d-------------i~eC~~~~~Cs--~~C~-------n~~g  434 (482)
                      +|...+|.+  +|++..  ++|+|.|++||  .+..|+.             +++|. ..+|.  ..|+       ++.+
T Consensus         2 ~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~--~G~~C~~~~~~~~~~~~c~~~~~C~-~~~C~~~g~C~~~~~~~~~~~~   78 (143)
T 4d90_A            2 ICDPNPCENGGICLPGLADGSFSCECPDGF--TDPNCSSVVEVASDEEEPTSAGPCT-PNPCHNGGTCEISEAYRGDTFI   78 (143)
T ss_dssp             -CCSCCCGGGCEEEC-----CCEEECCTTC--CTTTTCSCCCCTTTTTSCCCCCTTS-SCCCCTTCEEEECCCEETTEEC
T ss_pred             cCCCCcCCCCCEeeCCCCCCCEEeECCCCC--CCCCCccCccccccccccccCCcCC-CCCCCCCCEecCCCccccCCCC
Confidence            555566754  788765  58999999999  4555653             45564 45573  5888       7788


Q ss_pred             ceEEecCCCeEECCCCCccc-cCCCCCCCC
Q psy14262        435 SYVCSCTEGYTLRPDGKSCT-AVNVPQDEP  463 (482)
Q Consensus       435 sy~C~C~~Gy~l~~d~~tC~-didec~~~p  463 (482)
                      +|+|.|++||.    +..|. +|++|...|
T Consensus        79 ~~~C~C~~G~~----G~~C~~~i~~C~~~~  104 (143)
T 4d90_A           79 GYVCKCPRGFN----GIHCQHNINECEVEP  104 (143)
T ss_dssp             CEEEECCTTEE----STTSCEECCTTTTCC
T ss_pred             CeEeECcCCCc----CCCcccCCCcCCCCC
Confidence            99999999996    78897 999998665

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=98.23  E-value=1.1e-06  Score=63.68  Aligned_cols=42  Identities=45%  Similarity=0.910  Sum_probs=36.6

Q ss_pred             cccccccC---------CCCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        414 VDADECLI---------DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       414 ~di~eC~~---------~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      .+|+||..         .++|.+.|+|++|+|+|.|++||+|..++++|.+
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~   52 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred             CccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence            36788873         3689999999999999999999999999999864

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.23  E-value=4.7e-07  Score=84.50  Aligned_cols=40  Identities=35%  Similarity=0.660  Sum_probs=35.3

Q ss_pred             CcccCCCCeeeCC-CCCeecCccccCCCCCCCCCCCCCCCCcc--ccc
Q psy14262          2 IHQCFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDED--WDK   46 (482)
Q Consensus         2 ~~~C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~--~~~   46 (482)
                      ...|.+++|+|.+ +|+|||..|+|||+.||+     |+|||.  .|.
T Consensus        51 ~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~-----DgSDE~~~~C~   93 (217)
T 2gtl_M           51 EHHCDEHESECRGDVPECIHDLLFCDGEKDCR-----DGSDEDPETCS   93 (217)
T ss_dssp             CCCCCTTEEECSSSSCCEEEGGGTTSSSCCSS-----SSTTTSHHHHC
T ss_pred             CCCCCCCceecCCCCCcEechhhccCCCCCCC-----CCCccccCcCC
Confidence            3579999999973 699999999999999998     999997  564

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.20  E-value=8.9e-07  Score=82.02  Aligned_cols=55  Identities=25%  Similarity=0.565  Sum_probs=44.2

Q ss_pred             CCCCCceecC--CCCeeccCCCCCCCcCCCCCCCCCC--Ccccc-cccCCcc--ccCCCCceec
Q psy14262        204 ECTPGQFSCG--MGKCIPESWKCDGFVDCLEDGSDEP--NTCIH-QCFNGQV--QCALSKKCIP  260 (482)
Q Consensus       204 ~C~~~~f~C~--~g~Ci~~~~~CDg~~dC~~dgsDE~--~C~~~-~C~~~~f--~C~~~g~Ci~  260 (482)
                      .|.+.+|+|.  +|.|||..|+|||..|| .|||||.  +|... .|.+.+|  +|. ++.|+.
T Consensus        52 ~C~~~eFqC~~~~g~CIp~~wvCDG~~DC-~DGSDE~~~~C~~~~tc~~~qF~g~~~-~d~C~k  113 (220)
T 2gtl_N           52 HCEKRTFQCGGNEQECISDLLVCDGHKDC-HNAHDEDPDVCDTSVVKAGNVFSGTST-WHGCLA  113 (220)
T ss_dssp             SSCTTEEECCSSSCCEEETTTTTSSSCCS-TTCTTSCGGGGCGGGGCTTCEEEEEEE-ECSSCC
T ss_pred             CCCCCccCcCCCCCcEeCcceecCCCCCC-CCCCccCcccCCCCCccCCcceeeEec-CChhhc
Confidence            5788999995  68999999999999999 9999996  79776 7766554  455 555543

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.19  E-value=1.1e-07  Score=85.63  Aligned_cols=82  Identities=27%  Similarity=0.571  Sum_probs=57.0

Q ss_pred             Ccc-CCCCc-CCCCCCCCCccccCCCCc--cCCCCCcccccc--cc-CCCCC----CceeeecCC----ceEEecCC---
Q psy14262        381 DCE-NLKCS-HKCSPTPRGAMCFCPAGQ--NPNKTQCVDADE--CL-IDGSC----DQTCTNTHL----SYVCSCTE---  442 (482)
Q Consensus       381 ~C~-~~~C~-~~C~~~~~~~~C~C~~G~--~~~~~~C~di~e--C~-~~~~C----s~~C~n~~g----sy~C~C~~---  442 (482)
                      ||. ..+|. .+|++++++|+|.|++||  .+++++|+++++  |. ...+|    .+.|+++.+    +|+|.|++   
T Consensus         5 eC~~~~~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~   84 (162)
T 1uzk_A            5 ECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA   84 (162)
T ss_dssp             GGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCE
T ss_pred             cCCCCCCCCCCEeECCCCCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCC
Confidence            676 46774 489999999999999999  456899999887  86 22333    457887766    56666655   


Q ss_pred             ------------------------CeEECCCCCccccCCCCCCC
Q psy14262        443 ------------------------GYTLRPDGKSCTAVNVPQDE  462 (482)
Q Consensus       443 ------------------------Gy~l~~d~~tC~didec~~~  462 (482)
                                              ||++..+++.|.+||||+..
T Consensus        85 ~~~~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~  128 (162)
T 1uzk_A           85 WGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQEL  128 (162)
T ss_dssp             ETTTTEECCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHC
T ss_pred             cCCCcccCCCCCCCCceeECCCCCCcccCCCCCccCccccccCC
Confidence                                    55555556778999998754

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.17  E-value=1.1e-06  Score=77.19  Aligned_cols=69  Identities=30%  Similarity=0.636  Sum_probs=54.7

Q ss_pred             CCCCCCCCccccCCCCcc-------CCCCCccccccccCC--CCCC--ceeeecCCceEEecCCCeEECCC--------C
Q psy14262        390 KCSPTPRGAMCFCPAGQN-------PNKTQCVDADECLID--GSCD--QTCTNTHLSYVCSCTEGYTLRPD--------G  450 (482)
Q Consensus       390 ~C~~~~~~~~C~C~~G~~-------~~~~~C~di~eC~~~--~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d--------~  450 (482)
                      +|++   .|+|.|++||.       .++..|+++++|...  .+|.  +.|++++++|+|.|++||++...        +
T Consensus        14 ~C~~---~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~   90 (143)
T 2bou_A           14 SCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESE   90 (143)
T ss_dssp             EESS---SSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGG
T ss_pred             EEcC---CCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCC
Confidence            5655   38999999992       235789999999833  3785  69999999999999999998753        4


Q ss_pred             CccccCCCCCC
Q psy14262        451 KSCTAVNVPQD  461 (482)
Q Consensus       451 ~tC~didec~~  461 (482)
                      ..|++|+||..
T Consensus        91 ~~C~dideC~~  101 (143)
T 2bou_A           91 NTCQDVDECSS  101 (143)
T ss_dssp             CCEEECCHHHH
T ss_pred             CCcCCccCccC
Confidence            58999998864

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=98.13  E-value=2e-06  Score=63.97  Aligned_cols=38  Identities=45%  Similarity=0.872  Sum_probs=34.5

Q ss_pred             CCCCCCceeeecC-CceEEecCCCeEECCCCCccccCCC
Q psy14262        421 IDGSCDQTCTNTH-LSYVCSCTEGYTLRPDGKSCTAVNV  458 (482)
Q Consensus       421 ~~~~Cs~~C~n~~-gsy~C~C~~Gy~l~~d~~tC~dide  458 (482)
                      .++.|+|+|+|++ |+|+|.|++||+|..|+++|.++++
T Consensus         5 ~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~   43 (59)
T 2wph_E            5 KNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP   43 (59)
T ss_dssp             GGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESSS
T ss_pred             CCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC
Confidence            3578999999999 6999999999999999999999874

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.07  E-value=1.6e-06  Score=80.84  Aligned_cols=37  Identities=35%  Similarity=0.817  Sum_probs=22.1

Q ss_pred             CccCCCCCeecCC-CCceecCCcccCCCCCCCCCCCCC
Q psy14262        162 AVLCHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDEG  198 (482)
Q Consensus       162 ~~~C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~dgsDE~  198 (482)
                      ...|.+.+|+|.+ .++||+.+|+|||..||+|||||.
T Consensus        51 ~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~   88 (217)
T 2gtl_M           51 EHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED   88 (217)
T ss_dssp             CCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccc
Confidence            4456666666655 235666666666666666666665

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.01  E-value=6.5e-06  Score=82.42  Aligned_cols=152  Identities=23%  Similarity=0.576  Sum_probs=60.2

Q ss_pred             ccCCCCceecCCCccCccCCCCCCCCCCCCCCCCCCCccccCcccccCCCCccCCCCCCCCCCCCCCCCCcCCCCCCCcC
Q psy14262        251 QCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD  330 (482)
Q Consensus       251 ~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE~~C~~~~C~~~~f~C~~g~~Ci~~~~~CDg~~DC~~g~~~dgsDE~~~  330 (482)
                      .|.++|.|+. .+.|    .|.     .|.....|....|.+   .|.++++|+. .+.|    .|..|+     .... 
T Consensus       154 ~C~~~G~C~~-~~~C----~C~-----~G~~G~~C~~~~C~~---~C~~~G~C~~-~~~C----~C~~G~-----~G~~-  209 (324)
T 2ygq_A          154 GCRNGGFCNE-RRIC----ECP-----DGFHGPHCEKALCTP---RCMNGGLCVT-PGFC----ICPPGF-----YGVN-  209 (324)
T ss_dssp             CCCSSCEECT-TSCE----ECC-----TTEESSSSCEESSSS---CCCTTCEECS-SCCE----ECCTTC-----BTTT-
T ss_pred             CCCCCCEECC-CCeE----ECC-----CCCcCCCCCCCCCCC---CCCCCCEEcC-CCEE----eCCCCc-----cCCC-
Confidence            5666778875 3444    477     666666776556654   5888789986 4677    898444     3334 


Q ss_pred             CcCccCcccccCCCcccCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCccCCCCcC--CCCCCCCCccccCCCCccC
Q psy14262        331 KYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSH--KCSPTPRGAMCFCPAGQNP  408 (482)
Q Consensus       331 ~~C~~~~~~C~~~~f~C~~g~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~~~C~~~~C~~--~C~~~~~~~~C~C~~G~~~  408 (482)
                        |..  ..|.   ..|.+++.|+.. ++|    .|..|+.+.. |... +|. .+|.+  +|..   .++|.|++||  
T Consensus       210 --C~~--~~C~---~~C~~~G~C~~~-~~C----~C~~G~~G~~-C~~~-~C~-~~C~~~g~C~~---~~~C~C~~G~--  269 (324)
T 2ygq_A          210 --CDK--ANCS---TTCFNGGTCFYP-GKC----ICPPGLEGEQ-CEIS-KCP-QPCRNGGKCIG---KSKCKCSKGY--  269 (324)
T ss_dssp             --TCB--CCCS---SCCCSSCCBSCS-SCB----CCCTTCCTTT-TC---------------------------------
T ss_pred             --ccc--CcCC---CCCCCCCeeCCC-Cee----eCCCCccCCC-CCcC-cCC-CcCCCCCEECC---CCEEECCCCC--
Confidence              543  2353   368887789863 567    8999988777 8765 664 34543  5653   5799999999  


Q ss_pred             CCCCccccccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCccccC
Q psy14262        409 NKTQCVDADECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCTAV  456 (482)
Q Consensus       409 ~~~~C~di~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~di  456 (482)
                      .+..|+ +++|.  ..|.  ..|++   .++|.|.+||.    |..|...
T Consensus       270 ~G~~C~-~~~C~--~~C~~~g~C~~---~~~C~C~~G~~----G~~C~~~  309 (324)
T 2ygq_A          270 QGDLCS-KPVCE--PGCGAHGTCHE---PNKCQCQEGWH----GRHCNKR  309 (324)
T ss_dssp             --------------------------------------------------
T ss_pred             cCCCCc-CCCCC--CCCCCCCEECC---CCEeECCCCCc----CCCCCCC
Confidence            556675 45564  4562  46765   57999999997    6778543

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=97.90  E-value=5.8e-06  Score=65.59  Aligned_cols=50  Identities=38%  Similarity=0.769  Sum_probs=42.3

Q ss_pred             CccccccccCCCCCC-ceeeecCCceEEecCCCeEECCCCCccccCCCCC-CCC
Q psy14262        412 QCVDADECLIDGSCD-QTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQ-DEP  463 (482)
Q Consensus       412 ~C~di~eC~~~~~Cs-~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~-~~p  463 (482)
                      +|.+|+||....+|. +.|+|++++|+|.|++||++  +++.|.+|+||. ..|
T Consensus         1 sC~dideC~~~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~dideC~~~~~   52 (82)
T 1emn_A            1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNP   52 (82)
T ss_dssp             CCCCCCSSSSTTSCSSSEECCCSSCCCEECCTTEEE--ETTEEEECCGGGTCCT
T ss_pred             CCCccccCCCCCCcCCCEEEecCCCEEEECCCCeEC--CCCccCCcccccCCCC
Confidence            478899998557785 49999999999999999998  488999999997 444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.83  E-value=1.5e-05  Score=86.88  Aligned_cols=61  Identities=28%  Similarity=0.704  Sum_probs=54.0

Q ss_pred             cccccc-CCCCCCceeeecC-CceEEecCCCeEECCCCCccccCCCCCCCCcEEEeccCCceEEEeccC
Q psy14262        415 DADECL-IDGSCDQTCTNTH-LSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNG  481 (482)
Q Consensus       415 di~eC~-~~~~Cs~~C~n~~-gsy~C~C~~Gy~l~~d~~tC~didec~~~p~~l~~~~~~~ir~~~l~~  481 (482)
                      .+++|. .++.|+|.|.+++ ++|+|.|+.||.|.+++++|.+..     + +|+|+++.+||++.|..
T Consensus       264 ~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~-----~-~Ll~s~~~~i~~i~l~~  326 (628)
T 4a0p_A          264 GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPT-----T-FLLFSQKSAINRMVIDE  326 (628)
T ss_dssp             CCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCS-----S-EEEEEETTEEEEECCCT
T ss_pred             cceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcccc-----c-eeeeeccceEEEEeccc
Confidence            467887 5689999999999 999999999999999999998753     4 99999999999998864

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=97.79  E-value=8.7e-06  Score=73.69  Aligned_cols=87  Identities=32%  Similarity=0.731  Sum_probs=63.7

Q ss_pred             CCCCcccccccccCCCCCCCCCCCCCCCCCCCCCccCCC-CcC-CCCCCCCCccccCCCCccCCCCCcc-ccccccCCCC
Q psy14262        348 GSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLK-CSH-KCSPTPRGAMCFCPAGQNPNKTQCV-DADECLIDGS  424 (482)
Q Consensus       348 ~~g~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~~~C~~~~-C~~-~C~~~~~~~~C~C~~G~~~~~~~C~-di~eC~~~~~  424 (482)
                      .++ .|+. .++|    .|..|+.+.. |.   +|...+ |.+ +|+   +.|+|.|++||  .+..|+ ++++|....+
T Consensus        75 ~~g-~C~~-~~~C----~C~~G~~G~~-C~---~C~~~~~C~~g~C~---~~~~C~C~~G~--~G~~C~~~~~~C~~~~~  139 (169)
T 2vj2_A           75 KHG-SCKL-PGDC----RCQYGWQGLY-CD---KCIPHPGCVHGICN---EPWQCLCETNW--GGQLCDKDLNYCGTHQP  139 (169)
T ss_dssp             TTE-ECSS-TTCC----EECTTEESSS-SC---EECCCTTCSSEECS---STTCCEECTTE--ETTTTCEESCHHHHTCC
T ss_pred             CCc-ccCC-CCee----ECCCCCCCCC-cc---cCCCCCCCCCCCcC---CCCEEeCCCCC--CCCcccCCCCCCCCCCC
Confidence            344 6765 5667    7888887666 74   454333 554 565   57999999999  567797 7899974467


Q ss_pred             CC--ceeeec-CCceEEecCCCeEECCCCCcc
Q psy14262        425 CD--QTCTNT-HLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       425 Cs--~~C~n~-~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      |.  ..|+++ +++|+|.|++||+    +..|
T Consensus       140 C~~~g~C~~~~~~~~~C~C~~G~~----G~~C  167 (169)
T 2vj2_A          140 CLNGGTCSNTGPDKYQCSCPEGYS----GPNC  167 (169)
T ss_dssp             CCTTCEEEECSTTCEEEECCTTCC----STTS
T ss_pred             CCCCCEEcCCCCCCcEeECCCCCc----CcCc
Confidence            84  589997 8999999999997    5555

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.76  E-value=9.4e-06  Score=64.91  Aligned_cols=49  Identities=35%  Similarity=0.673  Sum_probs=40.8

Q ss_pred             cccccc-CCCCCC-ceeeecCCceEEecCCCeEECC-CCCccccCCCCCCCC
Q psy14262        415 DADECL-IDGSCD-QTCTNTHLSYVCSCTEGYTLRP-DGKSCTAVNVPQDEP  463 (482)
Q Consensus       415 di~eC~-~~~~Cs-~~C~n~~gsy~C~C~~Gy~l~~-d~~tC~didec~~~p  463 (482)
                      +|+||. .+..|. +.|+|++++|+|.|++||++.. +++.|++||||...|
T Consensus         2 dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~   53 (86)
T 1lmj_A            2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDP   53 (86)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCS
T ss_pred             ccccccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCC
Confidence            688997 446685 4899999999999999999863 578999999997655

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.76  E-value=1.4e-05  Score=66.82  Aligned_cols=55  Identities=25%  Similarity=0.655  Sum_probs=40.5

Q ss_pred             CCCccCCCCCcccccccc-CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCCC
Q psy14262        403 PAGQNPNKTQCVDADECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQD  461 (482)
Q Consensus       403 ~~G~~~~~~~C~di~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~  461 (482)
                      ..+|  .+..| +++||. .++.|++.|++++++|+|.|++||++. ++++|++|+||..
T Consensus        19 ~~~~--~~~~C-d~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~dideC~~   74 (107)
T 2w2n_E           19 ENLY--FQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-AQRRCEDIDECQD   74 (107)
T ss_dssp             -CCC--CSCCB-SCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE-TTTEEEC------
T ss_pred             CCCc--CCCCC-cCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc-CCCccccccccCC
Confidence            3455  45567 789998 457899999999999999999999985 5789999999974

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.63  E-value=3.1e-05  Score=82.58  Aligned_cols=46  Identities=30%  Similarity=0.540  Sum_probs=38.7

Q ss_pred             CceecC-CCCeeccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCCceec
Q psy14262        208 GQFSCG-MGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIP  260 (482)
Q Consensus       208 ~~f~C~-~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g~Ci~  260 (482)
                      .+|+|. +|+||+..|+|||..|| .|+|||.+|..     ..+.|. .+.++|
T Consensus        69 ~~f~C~~~g~Ci~~~~~Cdg~~dC-~d~sdE~~c~~-----~~~~C~-~~~~~~  115 (537)
T 3ojy_B           69 EGFVCAQTGRCVNRRLLCNGDNDC-GDQSDEANCRR-----IYKKCQ-HEMDQY  115 (537)
T ss_dssp             SSEECTTTCCEECGGGTTSSSCCS-SSSCTTSSCSS-----CSSCCS-SCCBCC
T ss_pred             CccCcCCCCcEeeccccCCCCCCC-CCccccccCCC-----CCCccc-cCcCCC
Confidence            689999 99999999999999999 99999998852     345676 556666

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.62  E-value=3.7e-05  Score=82.03  Aligned_cols=46  Identities=24%  Similarity=0.535  Sum_probs=39.9

Q ss_pred             CCeecC-CCCceecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCeec
Q psy14262        168 NELRCG-SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIP  219 (482)
Q Consensus       168 ~~f~C~-~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~C~~~~f~C~~g~Ci~  219 (482)
                      .+|+|. +| +||+..|+|||..||.|||||.+ |.    ..++.|..+.+||
T Consensus        69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~-c~----~~~~~C~~~~~~~  115 (537)
T 3ojy_B           69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEAN-CR----RIYKKCQHEMDQY  115 (537)
T ss_dssp             SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSS-CS----SCSSCCSSCCBCC
T ss_pred             CccCcCCCC-cEeeccccCCCCCCCCCcccccc-CC----CCCCccccCcCCC
Confidence            799998 77 99999999999999999999997 64    4456787777877

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=97.61  E-value=2.9e-05  Score=62.15  Aligned_cols=71  Identities=23%  Similarity=0.687  Sum_probs=50.1

Q ss_pred             ccCCCcccCCCCccccc--ccccCCCCCCCCCCC----CCCCCCCCCCccCCCCcCCCCCCCCCccccCC--CCc--cCC
Q psy14262        340 CHPNELRCGSSNQCVAL--SKFCDGKPDCSNGED----EGPFCNNKADCENLKCSHKCSPTPRGAMCFCP--AGQ--NPN  409 (482)
Q Consensus       340 C~~~~f~C~~g~~Ci~~--~~~CDg~~dC~dgsD----E~~~C~~~~~C~~~~C~~~C~~~~~~~~C~C~--~G~--~~~  409 (482)
                      |......| +++.|++.  +|+|    .|+.|+.    ... |...++|..++|.++|++++++|+|.|+  +||  ..+
T Consensus         6 C~~~~~~C-~~~~C~n~~g~y~C----~C~~G~~~~~~g~~-C~dideC~~~~C~~~C~n~~g~y~C~C~g~~G~~~~~~   79 (87)
T 1z6c_A            6 CSLKPSIC-GTAVCKNIPGDFEC----ECPEGYRYNLKSKS-CEDIDECSENMCAQLCVNYPGGYTCYCDGKKGFKLAQD   79 (87)
T ss_dssp             SSSSSSSB-TTSSCCCBTTBCCC----SSSTTCEEETTTTE-EECCCHHHHSCCSSEECCCSSSCCEECCSSSCCBCCTT
T ss_pred             ccCCCCCC-CCCEeECCCCCEEE----ECCCCceECCCCCc-CCCcCeeCCCCCCCEEEccCCCEEEECCCCcCCcccCC
Confidence            33333346 44477765  7889    8999875    444 8644489877899999999999999994  676  345


Q ss_pred             CCCcccc
Q psy14262        410 KTQCVDA  416 (482)
Q Consensus       410 ~~~C~di  416 (482)
                      ++.|.+|
T Consensus        80 ~~~C~di   86 (87)
T 1z6c_A           80 QKSCEVV   86 (87)
T ss_dssp             SSSCBCC
T ss_pred             CCcceEC
Confidence            5666655

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.56  E-value=1.4e-05  Score=58.45  Aligned_cols=40  Identities=23%  Similarity=0.568  Sum_probs=35.2

Q ss_pred             Ccc--CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccccccc
Q psy14262        381 DCE--NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADECL  420 (482)
Q Consensus       381 ~C~--~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~eC~  420 (482)
                      ||.  +++|++.|+|++++|+|.|++||  ..++++|.+++||.
T Consensus         3 EC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~   46 (55)
T 2jkh_L            3 LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP   46 (55)
T ss_dssp             CTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSC
T ss_pred             cccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcccc
Confidence            565  46788999999999999999999  57889999999985

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.54  E-value=3.8e-05  Score=82.15  Aligned_cols=35  Identities=40%  Similarity=0.910  Sum_probs=32.6

Q ss_pred             CCCCceecC-CCCeeccCCCCCCCcCCCCCCCCCCCcc
Q psy14262        205 CTPGQFSCG-MGKCIPESWKCDGFVDCLEDGSDEPNTC  241 (482)
Q Consensus       205 C~~~~f~C~-~g~Ci~~~~~CDg~~dC~~dgsDE~~C~  241 (482)
                      |. ++|+|. +|+||+..|+|||..|| .|+|||.+|.
T Consensus        66 c~-~~f~C~~~g~Ci~~~~~Cdg~~dC-~d~sDE~~C~  101 (554)
T 3ojy_A           66 CG-QDFQCKETGRCLKRHLVCNGDQDC-LDGSDEDDCE  101 (554)
T ss_dssp             CS-SSEECSSSCCEECGGGTTSSSCCS-SSCTTSSSCC
T ss_pred             CC-CcCccCCCCEEcccccccCCcccC-CCccccccCC
Confidence            53 699999 99999999999999999 9999999986

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.52  E-value=5e-05  Score=67.04  Aligned_cols=70  Identities=26%  Similarity=0.558  Sum_probs=57.4

Q ss_pred             cccCCCCccccc--ccccCCCCCCCCCCCCCCCCCCCCCcc--CCCCcCCC-CCCCCCccccCCCCc--cCCCCCccccc
Q psy14262        345 LRCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFCNNKADCE--NLKCSHKC-SPTPRGAMCFCPAGQ--NPNKTQCVDAD  417 (482)
Q Consensus       345 f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C~~~~~C~--~~~C~~~C-~~~~~~~~C~C~~G~--~~~~~~C~di~  417 (482)
                      .+|.+++.|++.  +|+|    .|+.|+.+.. |...++|.  +.+|.++| +++.++|+|.|++||  ..++++|.+++
T Consensus        54 ~pC~n~g~C~~~~~~y~C----~C~~G~~G~~-C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~~  128 (146)
T 1x7a_L           54 NPCLNGGLCKDDINSYEC----WCQVGFEGKN-CELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAV  128 (146)
T ss_dssp             CSSCTTCEEEECSSCEEE----ECCSSEESTT-TCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEECS
T ss_pred             CCCCCCCEeECCCCCEEE----ecCCCCcCCc-CCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCCC
Confidence            368887799876  7889    8999988776 88545888  35788899 999999999999999  46788998876


Q ss_pred             cc
Q psy14262        418 EC  419 (482)
Q Consensus       418 eC  419 (482)
                      +.
T Consensus       129 ~~  130 (146)
T 1x7a_L          129 PF  130 (146)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=97.45  E-value=3.4e-05  Score=57.22  Aligned_cols=46  Identities=22%  Similarity=0.521  Sum_probs=39.0

Q ss_pred             CCCCcCCCCCCC-CCccccCCCCc--cCCCCCccccccccCCCCCCceeeecC
Q psy14262        384 NLKCSHKCSPTP-RGAMCFCPAGQ--NPNKTQCVDADECLIDGSCDQTCTNTH  433 (482)
Q Consensus       384 ~~~C~~~C~~~~-~~~~C~C~~G~--~~~~~~C~di~eC~~~~~Cs~~C~n~~  433 (482)
                      +++|+|.|++++ ++|+|.|++||  .+++++|.+++    ..+|.+.|+|..
T Consensus         6 nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~----~~pC~~~c~n~~   54 (59)
T 2wph_E            6 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAV----PFPCGRVSVSQT   54 (59)
T ss_dssp             GGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESS----SSCTTCCCSCCC
T ss_pred             CCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCC----CCCCCCcccccc
Confidence            567899999999 59999999999  67899999875    367889998854

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.45  E-value=4.7e-05  Score=54.66  Aligned_cols=37  Identities=22%  Similarity=0.526  Sum_probs=33.2

Q ss_pred             CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccccccc
Q psy14262        384 NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADECL  420 (482)
Q Consensus       384 ~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~eC~  420 (482)
                      +++|++.|+|++++|+|.|++||  ..++++|.+++|+.
T Consensus         5 ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~p   43 (51)
T 1kig_L            5 NGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP   43 (51)
T ss_dssp             TTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSSC
T ss_pred             CCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCccc
Confidence            46788999999999999999999  57899999999874

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.39  E-value=7.9e-05  Score=79.68  Aligned_cols=54  Identities=28%  Similarity=0.712  Sum_probs=39.9

Q ss_pred             cCCCCCeecC-CCCceecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCeeccC
Q psy14262        164 LCHPNELRCG-SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPES  221 (482)
Q Consensus       164 ~C~~~~f~C~-~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~C~~~~f~C~~g~Ci~~~  221 (482)
                      .|. .+|+|. +| +||+..|+|||..||.|||||.+ |. ......+.|.....||..
T Consensus        65 ~c~-~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~-C~-~~~~~~~~C~~~~~iPg~  119 (554)
T 3ojy_A           65 QCG-QDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDD-CE-DVRAIDEDCSQYEPIPGS  119 (554)
T ss_dssp             CCS-SSEECSSSC-CEECGGGTTSSSCCSSSCTTSSS-CC-SCCCCCTTTTTSCBCTTH
T ss_pred             CCC-CcCccCCCC-EEcccccccCCcccCCCcccccc-CC-CCCCCccccccccccCcc
Confidence            354 799998 76 99999999999999999999998 85 222223456544555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.32  E-value=0.00021  Score=77.63  Aligned_cols=61  Identities=28%  Similarity=0.655  Sum_probs=52.0

Q ss_pred             ccccc-CCCCCCceeeecC--CceEEecCCCeEECCCCCccccCCCCCCCCcEEEeccCCceEEEeccC
Q psy14262        416 ADECL-IDGSCDQTCTNTH--LSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNG  481 (482)
Q Consensus       416 i~eC~-~~~~Cs~~C~n~~--gsy~C~C~~Gy~l~~d~~tC~didec~~~p~~l~~~~~~~ir~~~l~~  481 (482)
                      .++|. .++.|+|.|..++  ++|+|.|+.||.|..++++|.+..    .| +|+|+.+.+||+|.|..
T Consensus       272 ~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~----~~-~Ll~~~~~~i~~i~l~~  335 (619)
T 3s94_A          272 TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA----TE-LLLLARRTDLRRISLDT  335 (619)
T ss_dssp             CCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSC----SE-EEEEEESSCEEEEESSS
T ss_pred             cccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCC----ce-EEEEEcccceEEEecCC
Confidence            45676 4689999999987  479999999999999999998643    34 99999999999999865

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.28  E-value=4.8e-05  Score=58.24  Aligned_cols=40  Identities=25%  Similarity=0.460  Sum_probs=35.7

Q ss_pred             Ccc--CCCCcCCCCCCCC-CccccCCCCc--cCCCCCcccccccc
Q psy14262        381 DCE--NLKCSHKCSPTPR-GAMCFCPAGQ--NPNKTQCVDADECL  420 (482)
Q Consensus       381 ~C~--~~~C~~~C~~~~~-~~~C~C~~G~--~~~~~~C~di~eC~  420 (482)
                      +|.  +++|++.|+++++ +|+|.|++||  ..++++|.+++||.
T Consensus         7 eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~   51 (69)
T 1kli_L            7 ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP   51 (69)
T ss_dssp             CTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred             cccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCccccc
Confidence            675  6789999999998 7999999999  67899999999985

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=97.19  E-value=0.00028  Score=63.47  Aligned_cols=46  Identities=35%  Similarity=0.881  Sum_probs=38.8

Q ss_pred             CccccccccC-CC---CCCceeeecCCceEEecCCCeEECCCCCccccCC
Q psy14262        412 QCVDADECLI-DG---SCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN  457 (482)
Q Consensus       412 ~C~di~eC~~-~~---~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~did  457 (482)
                      .+.+++||.. .+   .|++.|+|++|+|.|.|++||+|..++++|++++
T Consensus       120 ~~~di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~~  169 (170)
T 1szb_A          120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS  169 (170)
T ss_dssp             EEEECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEEC-
T ss_pred             eccccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCcccccc
Confidence            3567899983 33   3999999999999999999999999999998764

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.15  E-value=7.4e-05  Score=54.09  Aligned_cols=37  Identities=24%  Similarity=0.445  Sum_probs=33.0

Q ss_pred             CCCCcCCCCCCCC-CccccCCCCc--cCCCCCcccccccc
Q psy14262        384 NLKCSHKCSPTPR-GAMCFCPAGQ--NPNKTQCVDADECL  420 (482)
Q Consensus       384 ~~~C~~~C~~~~~-~~~C~C~~G~--~~~~~~C~di~eC~  420 (482)
                      +++|+|.|+++++ +|+|.|++||  ..++++|.+++||.
T Consensus         6 nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec~   45 (53)
T 2bz6_L            6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP   45 (53)
T ss_dssp             GGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred             CCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCcccc
Confidence            4678999999998 7999999999  67899999999985

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=97.15  E-value=0.00053  Score=68.45  Aligned_cols=147  Identities=22%  Similarity=0.517  Sum_probs=54.9

Q ss_pred             CCeeccCCCCCCCcCCCCCCCCCCCcccccccCCccccCCCCceecCCCccCccCCCCCCCCCCCCCCCCCCCccccCcc
Q psy14262        215 GKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQ  294 (482)
Q Consensus       215 g~Ci~~~~~CDg~~dC~~dgsDE~~C~~~~C~~~~f~C~~~g~Ci~~~~~CDg~~dC~~~~~~dgsDE~~C~~~~C~~~~  294 (482)
                      |.|+..     +.-.| ..|.....|....|.+   .|.++|.|+. ...|    .|.     .|.....|....|..  
T Consensus       159 G~C~~~-----~~C~C-~~G~~G~~C~~~~C~~---~C~~~G~C~~-~~~C----~C~-----~G~~G~~C~~~~C~~--  217 (324)
T 2ygq_A          159 GFCNER-----RICEC-PDGFHGPHCEKALCTP---RCMNGGLCVT-PGFC----ICP-----PGFYGVNCDKANCST--  217 (324)
T ss_dssp             CEECTT-----SCEEC-CTTEESSSSCEESSSS---CCCTTCEECS-SCCE----ECC-----TTCBTTTTCBCCCSS--
T ss_pred             CEECCC-----CeEEC-CCCCcCCCCCCCCCCC---CCCCCCEEcC-CCEE----eCC-----CCccCCCcccCcCCC--
Confidence            466642     33467 7777777776556654   6877788976 3444    487     666666776666752  


Q ss_pred             cccCCCCccCCCCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCCCcccCCCCcccccccccCCCCCCCCCCCCCC
Q psy14262        295 VQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  374 (482)
Q Consensus       295 f~C~~g~~Ci~~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~~f~C~~g~~Ci~~~~~CDg~~dC~dgsDE~~  374 (482)
                       .|.++++|+. .+.|    .|..|+     ....   |..  ..|.   ..|.+++.|+. .+.|    .|..|+.+..
T Consensus       218 -~C~~~G~C~~-~~~C----~C~~G~-----~G~~---C~~--~~C~---~~C~~~g~C~~-~~~C----~C~~G~~G~~  273 (324)
T 2ygq_A          218 -TCFNGGTCFY-PGKC----ICPPGL-----EGEQ---CEI--SKCP---QPCRNGGKCIG-KSKC----KCSKGYQGDL  273 (324)
T ss_dssp             -CCCSSCCBSC-SSCB----CCCTTC-----CTTT---TC----------------------------------------
T ss_pred             -CCCCCCeeCC-CCee----eCCCCc-----cCCC---CCc--CcCC---CcCCCCCEECC-CCEE----ECCCCCcCCC
Confidence             5888889986 4678    899444     4444   642  3453   36888778985 4677    8999987776


Q ss_pred             CCCCCCCccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        375 FCNNKADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       375 ~C~~~~~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                       |... +|. .+|.+  +|.+   .++|.|++||  .+..|+
T Consensus       274 -C~~~-~C~-~~C~~~g~C~~---~~~C~C~~G~--~G~~C~  307 (324)
T 2ygq_A          274 -CSKP-VCE-PGCGAHGTCHE---PNKCQCQEGW--HGRHCN  307 (324)
T ss_dssp             ------------------------------------------
T ss_pred             -CcCC-CCC-CCCCCCCEECC---CCEeECCCCC--cCCCCC
Confidence             8765 665 34543  6764   4789999999  566674

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.12  E-value=7.1e-05  Score=76.34  Aligned_cols=46  Identities=33%  Similarity=0.770  Sum_probs=0.0

Q ss_pred             cccccc-CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCC
Q psy14262        415 DADECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQ  460 (482)
Q Consensus       415 di~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~  460 (482)
                      +++||. .++.|++.|.++.|+|+|.|++||+|..++++|.+|+||.
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~   48 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECA   48 (386)
T ss_dssp             -----------------------------------------------
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeC
Confidence            578897 5678999999999999999999999999999999999996

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.11  E-value=0.00049  Score=68.11  Aligned_cols=71  Identities=30%  Similarity=0.712  Sum_probs=59.0

Q ss_pred             cccCCCCccccc--ccccCCCCCCCCCCCCCCCCC-CCCCccC---CCCcCCCCCCCCCccccCCCCc--cCCCCCcccc
Q psy14262        345 LRCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFCN-NKADCEN---LKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDA  416 (482)
Q Consensus       345 f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C~-~~~~C~~---~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di  416 (482)
                      .+|.+++.|++.  +++|    .|+.|..+.. |. ..++|..   .+|.+.|.++.++|+|.|++||  ..++..|.++
T Consensus        11 ~pC~~~g~C~~~~~~~~C----~C~~g~~g~~-C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~   85 (317)
T 3h5c_B           11 QPCLHNGSCQDSIWGYTC----TCSPGYEGSN-CELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPH   85 (317)
T ss_dssp             CCCTTTCCCCCCSSSCCC----CCSSSCCSSS-SCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEEC
T ss_pred             CCCCCCCEeECCCCCeEE----ECCCCCcCCc-cccCcccCCCCCCCCCcCccccCCCeeEEeccccccccccccccccc
Confidence            358887788875  7889    9999998777 97 3349984   7899999999999999999999  5567889988


Q ss_pred             cccc
Q psy14262        417 DECL  420 (482)
Q Consensus       417 ~eC~  420 (482)
                      ++|.
T Consensus        86 ~~c~   89 (317)
T 3h5c_B           86 DQCA   89 (317)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            8874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.09  E-value=0.00035  Score=71.61  Aligned_cols=44  Identities=32%  Similarity=0.917  Sum_probs=38.6

Q ss_pred             cccc-CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCCC
Q psy14262        417 DECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQD  461 (482)
Q Consensus       417 ~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~  461 (482)
                      +||. .+..|++.|+|++++|.|.|++||+| .++++|++||||..
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~-~~~~~C~dideC~~   45 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQD   45 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEE-CSSSCEEECCCCST
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCc-CCCCcccCchhhhc
Confidence            4676 45678999999999999999999999 57899999999974

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.07  E-value=0.00015  Score=61.07  Aligned_cols=68  Identities=28%  Similarity=0.586  Sum_probs=53.0

Q ss_pred             ccCCCCccccc--ccccCCCCCCCCCCCCCCCCCCC---CCcc--CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccc
Q psy14262        346 RCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFCNNK---ADCE--NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDA  416 (482)
Q Consensus       346 ~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C~~~---~~C~--~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di  416 (482)
                      .|.++++|++.  +|+|    .|+.|+.+.. |...   ++|.  +++|+++|+++.++|+|.|++||  ..++++|.++
T Consensus        21 ~C~~~g~C~~~~~~y~C----~C~~G~~G~~-C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           21 LCCGHGTCIDGIGSFSC----DCRSGWEGRF-CQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             TTTTSEEECCCSSCCCE----EECTTEESTT-SCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEEC
T ss_pred             cCCCcCCCCCCCCCcEe----eCCCCCcCCC-cCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcC
Confidence            46666688875  7889    8999987776 8732   2686  56788899999999999999999  4678888765


Q ss_pred             cc
Q psy14262        417 DE  418 (482)
Q Consensus       417 ~e  418 (482)
                      .+
T Consensus        96 ~~   97 (114)
T 1aut_L           96 VK   97 (114)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=97.04  E-value=0.00031  Score=68.53  Aligned_cols=46  Identities=33%  Similarity=0.694  Sum_probs=39.7

Q ss_pred             ccccc-C-CCCCCceeeecCCceEEecCCCeEECCCCCccccCCCCCC
Q psy14262        416 ADECL-I-DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQD  461 (482)
Q Consensus       416 i~eC~-~-~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~  461 (482)
                      .|||. . ++.|+|+|.|+.++|+|.|++||+|..++++|.++++|.-
T Consensus         2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~C   49 (283)
T 3f1s_B            2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC   49 (283)
T ss_dssp             -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTCT
T ss_pred             CCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCcccccccccc
Confidence            57887 4 6899999999999999999999999999999999887753

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.00  E-value=0.00056  Score=52.53  Aligned_cols=26  Identities=27%  Similarity=0.583  Sum_probs=15.1

Q ss_pred             Ccc--CCCCcC--CCCCCCCCcccc-CCCCc
Q psy14262        381 DCE--NLKCSH--KCSPTPRGAMCF-CPAGQ  406 (482)
Q Consensus       381 ~C~--~~~C~~--~C~~~~~~~~C~-C~~G~  406 (482)
                      ||.  .++|.+  +|+|++++|+|. +..||
T Consensus         5 EC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~   35 (71)
T 2kl7_A            5 ECLTIPEACKGEMKCINHYGGYLCLPRSAAV   35 (71)
T ss_dssp             CTTCCCCSCTTEEEEEETTCCEEEEETTSCC
T ss_pred             cccCCCCCCCCCCEeECCCCCeEecccCCcc
Confidence            665  345643  577777777775 33455

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=96.99  E-value=0.00025  Score=62.05  Aligned_cols=68  Identities=24%  Similarity=0.473  Sum_probs=55.2

Q ss_pred             cccCCCCccccc--ccccCCCCCCCCCCCCCCCCCC--CCCc---c--CCCCcCCCCCCCC-CccccCCCCc--cCCCCC
Q psy14262        345 LRCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFCNN--KADC---E--NLKCSHKCSPTPR-GAMCFCPAGQ--NPNKTQ  412 (482)
Q Consensus       345 f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C~~--~~~C---~--~~~C~~~C~~~~~-~~~C~C~~G~--~~~~~~  412 (482)
                      .+|.++++|++.  +|.|    .|+.|+.+.. |..  + +|   .  +++|.++|+++.+ +|+|.|++||  ..++++
T Consensus        53 ~pC~n~g~C~~~~g~y~C----~C~~G~~G~~-C~~~~~-~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~  126 (142)
T 2c4f_L           53 SPCQNGGSCKDQLQSYIC----FCLPAFEGRN-CETHKD-DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS  126 (142)
T ss_dssp             CCCCTTCEEEEETTEEEE----ECCTTEESTT-SCEEGG-GCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSC
T ss_pred             CCcCCCCEEeCCCCCEEe----eCCCCccCCc-cccCcc-ccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCC
Confidence            368887799876  7889    8999988777 874  3 43   3  5678889999999 9999999999  467889


Q ss_pred             cccccc
Q psy14262        413 CVDADE  418 (482)
Q Consensus       413 C~di~e  418 (482)
                      |.++++
T Consensus       127 C~~~~e  132 (142)
T 2c4f_L          127 CTPTVE  132 (142)
T ss_dssp             EEESSS
T ss_pred             CCCCCc
Confidence            988876

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=96.85  E-value=0.00017  Score=62.49  Aligned_cols=68  Identities=21%  Similarity=0.546  Sum_probs=31.9

Q ss_pred             ccCCCCccccc--ccccCCCCCCCCCCCCCCCCCC-C-CCccC--CCCcCCCCCCCCCccccCCCCc--cCCCCCccccc
Q psy14262        346 RCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFCNN-K-ADCEN--LKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDAD  417 (482)
Q Consensus       346 ~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C~~-~-~~C~~--~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~  417 (482)
                      +|.+++.|++.  +|.|    .|+.|+.+.. |.. . ++|..  .+|.++|+++.++|+|.|++||  ..++++|.+++
T Consensus        49 pC~n~g~C~~~~~~y~C----~C~~G~~G~~-C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~~  123 (134)
T 2vh0_B           49 PCQNQGKCKDGLGEYTC----TCLEGFEGKN-CELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG  123 (134)
T ss_dssp             -------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             CCCCcCCcccCCCCEEe----eCCCCccCCc-cccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcCC
Confidence            58777788875  7889    8999988776 874 1 37873  5788899999999999999999  46688898765


Q ss_pred             c
Q psy14262        418 E  418 (482)
Q Consensus       418 e  418 (482)
                      +
T Consensus       124 ~  124 (134)
T 2vh0_B          124 P  124 (134)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=96.85  E-value=0.00036  Score=56.30  Aligned_cols=53  Identities=11%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             CccccCCCCccCCCCCccccccccCCCCCCceeeecCCceEEecCCCeEECCCCCccc--cCCCCCCCC
Q psy14262        397 GAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT--AVNVPQDEP  463 (482)
Q Consensus       397 ~~~C~C~~G~~~~~~~C~di~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~--didec~~~p  463 (482)
                      +|+|.|++||  .+..| ++++|+     ...|+|..++|+|.|++||+      .|+  ++++|.+.|
T Consensus         1 sy~C~C~~g~--~g~~c-~~~~c~-----~~pC~n~~~~y~C~C~~G~~------~C~~~~~~~C~~~p   55 (91)
T 1tpg_A            1 SYQVICRDEK--TQMIY-QQHQSW-----LRPVLRSNRVEYCWCNSGRA------QCHSVPVKSCSEPR   55 (91)
T ss_dssp             CCCCCCBCSS--SCCBC-CSSCEE-----EEECSSSSCEEEEECSSSCC------BCCEECEEECSSCC
T ss_pred             CeeeECCCCC--cCCeE-CCCccc-----CCccccCCCCcEeECCCCCc------ccccCcCCcccCCC
Confidence            5899999999  45566 577775     23467889999999999995      574  678887665

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=96.80  E-value=0.0002  Score=66.18  Aligned_cols=68  Identities=22%  Similarity=0.555  Sum_probs=32.0

Q ss_pred             cccCCCCccccc--ccccCCCCCCCCCCCCCCCCCCC--CCcc--CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccc
Q psy14262        345 LRCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFCNNK--ADCE--NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDA  416 (482)
Q Consensus       345 f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C~~~--~~C~--~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di  416 (482)
                      .+|.+++.|++.  +|.|    .|+.|+.+.. |...  ++|.  +.+|.++|+++.++|+|.|++||  ..++++|.++
T Consensus        48 ~pC~ngg~C~n~~g~y~C----~C~~Gf~G~~-Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~  122 (195)
T 1nfu_B           48 SPCQNQGKCKDGLGEYTC----TCLEGFEGKN-CELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT  122 (195)
T ss_dssp             --------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred             CCCCCCCEeECCCCCeeE----eCCCCceecc-ccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccC
Confidence            368887789875  8899    8999998777 9741  3898  36788899999999999999999  4668899876


Q ss_pred             c
Q psy14262        417 D  417 (482)
Q Consensus       417 ~  417 (482)
                      .
T Consensus       123 ~  123 (195)
T 1nfu_B          123 G  123 (195)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.60  E-value=0.0015  Score=57.76  Aligned_cols=43  Identities=37%  Similarity=0.729  Sum_probs=37.6

Q ss_pred             ccccccccC--CCCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        413 CVDADECLI--DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       413 C~di~eC~~--~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      +.++++|..  ...|++.|.|++++|+|.|.+||.|..++++|++
T Consensus       114 ~~d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             EEECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             cccCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence            567889973  3579999999999999999999999999999975

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=96.31  E-value=5.5e-05  Score=73.04  Aligned_cols=130  Identities=10%  Similarity=0.031  Sum_probs=73.0

Q ss_pred             ccccCCCCccC--CCCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccC----CCcccCCCCcccccccccCCCCCCC
Q psy14262        294 QVQCALSKKCI--PHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHP----NELRCGSSNQCVALSKFCDGKPDCS  367 (482)
Q Consensus       294 ~f~C~~g~~Ci--~~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~----~~f~C~~g~~Ci~~~~~CDg~~dC~  367 (482)
                      ...|.++++||  ..+|.|    +|+     .|.....   |......|..    ..-+|.++.+|+             
T Consensus        37 ~~~c~ngG~C~~g~~~y~C----~Cp-----~Gf~G~~---Ce~ni~ec~~~~~c~s~pC~nggtc~-------------   91 (267)
T 4fbr_A           37 DIKSDDGGKTLKGTMTYNG----EGP-----IGFRGTL---SSANNYTVENQWGGTSAPWQPGGVWV-------------   91 (267)
T ss_dssp             EEECSSTTSEEEEEEEETT----SCC-----EEEEEEE---CSTTEEEEEEESSSTTSCEEEEEEEE-------------
T ss_pred             CCCcCCCCeecCCCCCeEE----eCC-----CCccccc---ccccccccccccCcCCCcccCCCeee-------------
Confidence            34688888999  588999    899     4444444   4433333210    111333333332             


Q ss_pred             CCCCCCCCCCCCCCccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc-cccccc------------------------
Q psy14262        368 NGEDEGPFCNNKADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV-DADECL------------------------  420 (482)
Q Consensus       368 dgsDE~~~C~~~~~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~-di~eC~------------------------  420 (482)
                      .   ... |..+.+|.+.+|..  +|++...+|+|.|++||  .+..|. ++++|.                        
T Consensus        92 ~---G~~-c~~~~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf--~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~  165 (267)
T 4fbr_A           92 L---GAR-DKQNIVAVSIKSNDGGKTLTGTTTYNGEGPIGF--KSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQ  165 (267)
T ss_dssp             C---CCC-SSCCEEEEEEECSSTTSEEEEEEEETTSCCEEE--EEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTS
T ss_pred             c---cCc-cccccccCCCCCCCCCEEecCCccEEeeCCCCc--cccCCCCCcccccccCCcCCccccCCcceeccccccc
Confidence            1   111 44333566556654  67777778888888888  222232 122210                        


Q ss_pred             ----CCCCC--CceeeecCCceEEecCCCeEECCCCCccc-cCCC
Q psy14262        421 ----IDGSC--DQTCTNTHLSYVCSCTEGYTLRPDGKSCT-AVNV  458 (482)
Q Consensus       421 ----~~~~C--s~~C~n~~gsy~C~C~~Gy~l~~d~~tC~-dide  458 (482)
                          ...+|  ...|++...+|+|.|++||+    ++.|. +|++
T Consensus       166 ~i~c~~~~c~ngg~C~dg~~~y~C~Cp~Gf~----G~~c~~~i~e  206 (267)
T 4fbr_A          166 NVINVDAKSNDGGKTLSGTMTYNGEGPIGFR----GTLTSPDTYT  206 (267)
T ss_dssp             CEEEEEEECSSTTSEEEEEEEETTSCCEEEE----EEEEETTEEE
T ss_pred             ccccCCCCCCCCCEeeCCCCCeEEeCCCCcc----ccccccccce
Confidence                01223  24688888999999999998    55665 4454

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=96.19  E-value=0.0017  Score=73.58  Aligned_cols=34  Identities=35%  Similarity=0.685  Sum_probs=31.5

Q ss_pred             CCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccccc
Q psy14262          8 GQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKY   47 (482)
Q Consensus         8 ~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~~~   47 (482)
                      ++|+|. +|+||+..|+|||.+||+     |+|||.+|..
T Consensus       121 ~~F~C~-~g~ci~~~~~c~g~~dC~-----d~sde~~C~~  154 (913)
T 3t5o_A          121 NKFRCD-SGRCIARKLECNGENDCG-----DNSDERDCGR  154 (913)
T ss_dssp             SEEECT-TSCEEEGGGSSSSSCCSS-----SSGGGTTCSS
T ss_pred             cccccC-CCceEccceecCCcccCC-----CccccccCCC
Confidence            679999 899999999999999998     8999998864

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.07  E-value=0.0016  Score=46.54  Aligned_cols=30  Identities=27%  Similarity=0.733  Sum_probs=25.7

Q ss_pred             CCCcCCCCCCCCCccccCCCCc--cCCCCCcc
Q psy14262        385 LKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCV  414 (482)
Q Consensus       385 ~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~  414 (482)
                      .+|+++|+|++++|+|.|++||  ..++++|.
T Consensus        20 ~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~   51 (53)
T 1apq_A           20 PQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             CTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             CCCCCEeECCCCCeEEECCCCCeECCCCCccC
Confidence            5788899999999999999999  45677775

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=96.04  E-value=0.0052  Score=53.68  Aligned_cols=42  Identities=33%  Similarity=0.730  Sum_probs=34.9

Q ss_pred             ccccccCCCCCC-ceeeecCCceEEecCCCeEECCCCCccccCC
Q psy14262        415 DADECLIDGSCD-QTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN  457 (482)
Q Consensus       415 di~eC~~~~~Cs-~~C~n~~gsy~C~C~~Gy~l~~d~~tC~did  457 (482)
                      +|+||+ ..+|. ++|+|++++|+|.|++||++...+++|.++.
T Consensus         3 dideC~-~~pC~ng~C~n~~g~y~C~C~~G~~g~~~~~~C~~~~   45 (147)
T 2w86_A            3 DIDECE-SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI   45 (147)
T ss_dssp             CCCGGG-GCCSBTSEEEEETTEEEEECCTTEEECTTSSBEEECC
T ss_pred             cCccCc-CCCCCCCEeECCCCCEEeECCCCcccCCCCCeecCCC
Confidence            678887 46785 5899999999999999999988888887654

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=95.82  E-value=0.0076  Score=40.10  Aligned_cols=34  Identities=38%  Similarity=0.940  Sum_probs=26.6

Q ss_pred             ccccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCcc
Q psy14262        415 DADECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       415 di~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      ++++|. ..+|.  ..|+++.++|+|.|++||.    ++.|
T Consensus         2 d~d~C~-~~pC~ngg~C~~~~~~~~C~C~~G~~----G~~C   37 (39)
T 1edm_B            2 DGDQCE-SNPCLNGGSCKDDINSYECWCPFGFE----GKNC   37 (39)
T ss_dssp             CCCTTT-TCCCCTTCEEEEETTEEEEECCTTCC----STTS
T ss_pred             ccccCC-CCCCCCCCEeEcCCCceEeECCCCCc----CCcc
Confidence            567776 45774  5899999999999999996    5555

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=95.67  E-value=0.0087  Score=65.44  Aligned_cols=83  Identities=24%  Similarity=0.601  Sum_probs=56.6

Q ss_pred             cccCCCCcccccccccCCCCCCC----CCCCCCCCCC--CCCCccC---CCCcC--CCCCCCCCccccCCCCccCCCCCc
Q psy14262        345 LRCGSSNQCVALSKFCDGKPDCS----NGEDEGPFCN--NKADCEN---LKCSH--KCSPTPRGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       345 f~C~~g~~Ci~~~~~CDg~~dC~----dgsDE~~~C~--~~~~C~~---~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C  413 (482)
                      ..|.+++.|+.  ..|    .|.    .|+.+.. |.  .. +|..   .+|+.  +|.+    +.|.|++||  .+..|
T Consensus       493 ~~Cs~~G~C~~--g~C----~C~~~~~~Gy~G~~-Ce~~~~-~C~~~~~~~C~~~G~C~~----g~C~C~~Gy--~G~~C  558 (690)
T 3fcs_B          493 PVCSQRGECLC--GQC----VCHSSDFGKITGKY-CECDDF-SCVRYKGEMCSGHGQCSC----GDCLCDSDW--TGYYC  558 (690)
T ss_dssp             CGGGGSEEECS--SSE----EECCCSSCCCBSTT-SCBCSS-CCCBSSSSBGGGSEEEET----TEEEECTTE--ESSSS
T ss_pred             CCCCCCCEEEC--Cee----EeecCCCCCeeCCC-cCcccC-cCcCCCCCCCCCCCEecC----CeeECcCCC--cCCCC
Confidence            45877678884  455    787    7777666 86  33 6762   45653  5654    789999999  55566


Q ss_pred             c---ccccccC--CCCCC--ceeeecCCceEEec-CCCeE
Q psy14262        414 V---DADECLI--DGSCD--QTCTNTHLSYVCSC-TEGYT  445 (482)
Q Consensus       414 ~---di~eC~~--~~~Cs--~~C~n~~gsy~C~C-~~Gy~  445 (482)
                      +   ++++|..  ...|+  ..|++    .+|.| .+||.
T Consensus       559 eC~~~~~~C~~~~g~~C~~~G~C~~----g~C~C~~~Gy~  594 (690)
T 3fcs_B          559 NCTTRTDTCMSSNGLLCSGRGKCEC----GSCVCIQPGSY  594 (690)
T ss_dssp             CEECCCTTTBCTTSSBTSSSCEEET----TEEECCSTTCB
T ss_pred             ccCCCCCcccCCCCCCCCCCCEEeC----CEEECCCCCcc
Confidence            5   5677762  25674  47865    38999 89997

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=95.53  E-value=0.0034  Score=46.59  Aligned_cols=42  Identities=26%  Similarity=0.661  Sum_probs=31.0

Q ss_pred             CccccccccCCCCCC----ceeeecCCceEEecCCCeEECCCCCccccCC
Q psy14262        412 QCVDADECLIDGSCD----QTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN  457 (482)
Q Consensus       412 ~C~di~eC~~~~~Cs----~~C~n~~gsy~C~C~~Gy~l~~d~~tC~did  457 (482)
                      .+.++++|. ..+|.    ..|+++.++|.|.|++||.+   +..|...+
T Consensus         7 ~~~~~d~C~-snPC~nga~gtC~~~~g~y~C~C~~Gy~~---G~~C~~~~   52 (61)
T 2k2s_B            7 LSETPAACS-SNPCGPEAAGTCKETNSGYICRCNQGYRI---SLDGTGNV   52 (61)
T ss_dssp             CTTSCCHHH-HCSSCSSSCCEEEECSSEEEEECCTTEEE---EECSSSCE
T ss_pred             hcCCCCcCc-CCCCcCCCccccccCCCceEeECCCCCcc---CCCCCCCC
Confidence            356778887 46684    48999999999999999983   23454444

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.48  E-value=0.0052  Score=59.67  Aligned_cols=43  Identities=23%  Similarity=0.675  Sum_probs=33.7

Q ss_pred             ccccccc-CCCCCC--ceeeecCCceEEecCCCeEECCCCCccccCCC
Q psy14262        414 VDADECL-IDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV  458 (482)
Q Consensus       414 ~di~eC~-~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~dide  458 (482)
                      .+++||. ..+.|.  ..|+|+.|+|+|.|.+||..  ++++|.++|+
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~G--nG~~C~d~d~   48 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTG--NGRQCVAEGS   48 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEE--CSSSEEETTC
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCC--CCCcCCCCCC
Confidence            4788997 557885  47999999999999999984  5889999986

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.47  E-value=0.0092  Score=58.63  Aligned_cols=40  Identities=28%  Similarity=0.728  Sum_probs=34.1

Q ss_pred             cccccc-C---CCCCCceeeecC------CceEEecCCCeEECCCCCccc
Q psy14262        415 DADECL-I---DGSCDQTCTNTH------LSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       415 di~eC~-~---~~~Cs~~C~n~~------gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      ..++|. .   ++.|+|.|.+++      ++|+|.|+.||+|..++++|.
T Consensus       266 ~~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C~~g~~l~~d~~~C~  315 (316)
T 1ijq_A          266 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL  315 (316)
T ss_dssp             CCCTTSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             ccccccccccCCCCcCcccCCCccccCCCCCeEeeCCCCCEECCCCCccC
Confidence            446676 3   678999999986      589999999999999999995

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=95.47  E-value=0.0075  Score=68.32  Aligned_cols=34  Identities=38%  Similarity=0.849  Sum_probs=32.0

Q ss_pred             CceecCCCCeeccCCCCCCCcCCCCCCCCCCCccc
Q psy14262        208 GQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCI  242 (482)
Q Consensus       208 ~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C~~  242 (482)
                      +.|+|.+|+||+..|+|||..|| .|+|||.+|..
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC-~d~sde~~C~~  154 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDC-GDNSDERDCGR  154 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCS-SSSGGGTTCSS
T ss_pred             cccccCCCceEccceecCCcccC-CCccccccCCC
Confidence            67999999999999999999999 99999999963

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=95.29  E-value=0.0039  Score=56.01  Aligned_cols=105  Identities=22%  Similarity=0.446  Sum_probs=64.7

Q ss_pred             CCCCCCCCCCccccCccccc--CCCCccCCCCCCCCCCCCCCCCCcCCCCCCCcCCcCccCcccccCCCcccCCCCcccc
Q psy14262        278 DNTDEDWDKFHQCFNGQVQC--ALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVA  355 (482)
Q Consensus       278 dgsDE~~C~~~~C~~~~f~C--~~g~~Ci~~~~~CDg~~DC~~g~~~dgsDE~~~~~C~~~~~~C~~~~f~C~~g~~Ci~  355 (482)
                      .|.....|....|..   .|  .++ .|+. .++|    .|..||     ....   |.    .|... ..|.++ .|+ 
T Consensus        56 ~G~~G~~C~~~~C~~---~C~~~~g-~C~~-~~~C----~C~~G~-----~G~~---C~----~C~~~-~~C~~g-~C~-  111 (169)
T 2vj2_A           56 EGWMGPECNRAICRQ---GCSPKHG-SCKL-PGDC----RCQYGW-----QGLY---CD----KCIPH-PGCVHG-ICN-  111 (169)
T ss_dssp             TTEESTTSCEECCCT---TCCTTTE-ECSS-TTCC----EECTTE-----ESSS---SC----EECCC-TTCSSE-ECS-
T ss_pred             CCCcCCCCCCCCCCC---CCCCCCc-ccCC-CCee----ECCCCC-----CCCC---cc----cCCCC-CCCCCC-CcC-
Confidence            444344454334442   24  333 6775 5677    788444     3334   52    23221 237776 787 


Q ss_pred             cccccCCCCCCCCCCCCCCCCC-CCCCcc-CCCCcC--CCCCC-CCCccccCCCCccCCCCCc
Q psy14262        356 LSKFCDGKPDCSNGEDEGPFCN-NKADCE-NLKCSH--KCSPT-PRGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       356 ~~~~CDg~~dC~dgsDE~~~C~-~~~~C~-~~~C~~--~C~~~-~~~~~C~C~~G~~~~~~~C  413 (482)
                      .+++|    .|..|+.... |. ..++|. ..+|.+  +|+++ +++|+|.|++||  .+..|
T Consensus       112 ~~~~C----~C~~G~~G~~-C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~--~G~~C  167 (169)
T 2vj2_A          112 EPWQC----LCETNWGGQL-CDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY--SGPNC  167 (169)
T ss_dssp             STTCC----EECTTEETTT-TCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTC--CSTTS
T ss_pred             CCCEE----eCCCCCCCCc-ccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCC--cCcCc
Confidence            46777    8888887766 87 223776 467875  78886 788999999999  55555

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.87  E-value=0.014  Score=57.61  Aligned_cols=42  Identities=31%  Similarity=0.767  Sum_probs=35.1

Q ss_pred             ccccc-CCCCCCceeeecCC--ceEEecCCCeEECCCCCccccCC
Q psy14262        416 ADECL-IDGSCDQTCTNTHL--SYVCSCTEGYTLRPDGKSCTAVN  457 (482)
Q Consensus       416 i~eC~-~~~~Cs~~C~n~~g--sy~C~C~~Gy~l~~d~~tC~did  457 (482)
                      .++|. .++.|+|.|...++  +|+|.|+.||+|..++++|.+-+
T Consensus       267 ~n~C~~~ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~~~  311 (318)
T 3sov_A          267 TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGN  311 (318)
T ss_dssp             CCTTTTTGGGCSSEEEECSSTTSEEEECSTTCCBCTTSSCBCC--
T ss_pred             ccccccCCCCcceEEecCCCCCCeEEECCCCCEECCCCCCCCCCC
Confidence            45676 46899999999876  79999999999999999998754

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=94.64  E-value=0.00087  Score=64.63  Aligned_cols=94  Identities=7%  Similarity=0.017  Sum_probs=62.0

Q ss_pred             cccCCCCccccc--ccccCCCCCCCCCCCCCCCCCCC-CCccC-CCCcC-CCCCCCCCccccCCCCccCCCCCccccccc
Q psy14262        345 LRCGSSNQCVAL--SKFCDGKPDCSNGEDEGPFCNNK-ADCEN-LKCSH-KCSPTPRGAMCFCPAGQNPNKTQCVDADEC  419 (482)
Q Consensus       345 f~C~~g~~Ci~~--~~~CDg~~dC~dgsDE~~~C~~~-~~C~~-~~C~~-~C~~~~~~~~C~C~~G~~~~~~~C~di~eC  419 (482)
                      ..|.++++|+..  +|.|    +|+.|+.... |..+ ++|.+ ..|.. .|++   +..|     |  .+..|..+++|
T Consensus        38 ~~c~ngG~C~~g~~~y~C----~Cp~Gf~G~~-Ce~ni~ec~~~~~c~s~pC~n---ggtc-----~--~G~~c~~~~eC  102 (267)
T 4fbr_A           38 IKSDDGGKTLKGTMTYNG----EGPIGFRGTL-SSANNYTVENQWGGTSAPWQP---GGVW-----V--LGARDKQNIVA  102 (267)
T ss_dssp             EECSSTTSEEEEEEEETT----SCCEEEEEEE-CSTTEEEEEEESSSTTSCEEE---EEEE-----E--CCCCSSCCEEE
T ss_pred             CCcCCCCeecCCCCCeEE----eCCCCccccc-ccccccccccccCcCCCcccC---CCee-----e--ccCcccccccc
Confidence            478888899986  9999    9999987766 7632 24431 11111 2222   1122     2  45567777888


Q ss_pred             cCCCCC--CceeeecCCceEEecCCCeEECCCCCccc-cCCC
Q psy14262        420 LIDGSC--DQTCTNTHLSYVCSCTEGYTLRPDGKSCT-AVNV  458 (482)
Q Consensus       420 ~~~~~C--s~~C~n~~gsy~C~C~~Gy~l~~d~~tC~-dide  458 (482)
                      + ..+|  ..+|++...+|+|.|+.||+    +..|. ++++
T Consensus       103 ~-s~pC~ngG~C~~~~~sy~C~C~~Gf~----G~~Ce~~~d~  139 (267)
T 4fbr_A          103 V-SIKSNDGGKTLTGTTTYNGEGPIGFK----SEVTDGDTYS  139 (267)
T ss_dssp             E-EEECSSTTSEEEEEEEETTSCCEEEE----EEECCCCEEE
T ss_pred             C-CCCCCCCCEEecCCccEEeeCCCCcc----ccCCCCCccc
Confidence            7 3556  46999999999999999998    44554 3444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.43  E-value=0.019  Score=62.11  Aligned_cols=54  Identities=37%  Similarity=0.873  Sum_probs=44.3

Q ss_pred             hhhhhccCCCCCCcceeeCCceecCceeeCCCCCCCcccCCCCCCccccccCCC
Q psy14262        106 ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS  159 (482)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~~~  159 (482)
                      .+|+++.|+|+.+..+.-...-+|+++..|....-+||.|+..+..+.+.++|.
T Consensus       150 ~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          150 PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             CEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            467888999998888876667789999999888899999988888887766553

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=94.16  E-value=0.012  Score=39.03  Aligned_cols=32  Identities=28%  Similarity=0.780  Sum_probs=24.7

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      +|...+|.+  +|++..++|+|.|++||  .+..|+
T Consensus         5 ~C~~~pC~ngg~C~~~~~~~~C~C~~G~--~G~~Ce   38 (39)
T 1edm_B            5 QCESNPCLNGGSCKDDINSYECWCPFGF--EGKNCE   38 (39)
T ss_dssp             TTTTCCCCTTCEEEEETTEEEEECCTTC--CSTTSC
T ss_pred             cCCCCCCCCCCEeEcCCCceEeECCCCC--cCCccC
Confidence            566666764  78888899999999999  555553

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=93.97  E-value=0.047  Score=39.49  Aligned_cols=36  Identities=28%  Similarity=0.671  Sum_probs=26.5

Q ss_pred             cccccccCCCCCC--ceee-----ecCCceEEecCCCeEECCCCCccc
Q psy14262        414 VDADECLIDGSCD--QTCT-----NTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       414 ~di~eC~~~~~Cs--~~C~-----n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      .+++||. ..+|.  .+|+     +..++|.|.|++||.    |+.|+
T Consensus         6 ~~~~eC~-s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~----G~~CE   48 (55)
T 3u7u_G            6 VKCAEKE-KTFCVNGGECFMVKDLSNPSRYLCKCPNEFT----GDRCQ   48 (55)
T ss_dssp             EECCSTT-TTTSCTTCEEEEECCC--CCCEEEEECTTEE----STTSC
T ss_pred             ccCCCCc-CCCCCCCCCcCCCCccCCCCCEeEeCCCCCc----CCCcC
Confidence            4678887 56783  5884     567889999999998    77886

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=93.76  E-value=0.044  Score=59.87  Aligned_cols=92  Identities=24%  Similarity=0.550  Sum_probs=57.3

Q ss_pred             ccCCCCccCCCCCCCCCCCCCC----CCCcCCCCCCCcCCcCccCcccccC-CCcccCCCCcccccccccCCCCCCCCCC
Q psy14262        296 QCALSKKCIPHNWLCDEEMDCS----TDDIVDNTDEDWDKYFSHNAVLCHP-NELRCGSSNQCVALSKFCDGKPDCSNGE  370 (482)
Q Consensus       296 ~C~~g~~Ci~~~~~CDg~~DC~----~g~~~dgsDE~~~~~C~~~~~~C~~-~~f~C~~g~~Ci~~~~~CDg~~dC~dgs  370 (482)
                      .|.++++|+.  +.|    .|.    .||.+     ..   |......|.. ....|.+++.|+.  +.|    .|..|+
T Consensus       494 ~Cs~~G~C~~--g~C----~C~~~~~~Gy~G-----~~---Ce~~~~~C~~~~~~~C~~~G~C~~--g~C----~C~~Gy  553 (690)
T 3fcs_B          494 VCSQRGECLC--GQC----VCHSSDFGKITG-----KY---CECDDFSCVRYKGEMCSGHGQCSC--GDC----LCDSDW  553 (690)
T ss_dssp             GGGGSEEECS--SSE----EECCCSSCCCBS-----TT---SCBCSSCCCBSSSSBGGGSEEEET--TEE----EECTTE
T ss_pred             CCCCCCEEEC--Cee----EeecCCCCCeeC-----CC---cCcccCcCcCCCCCCCCCCCEecC--Cee----ECcCCC
Confidence            4776678884  455    666    44432     22   5433345542 2346877668876  667    888888


Q ss_pred             CCCCCCC----CCCCccC---CCCcC--CCCCCCCCccccC-CCCccCCCCCccc
Q psy14262        371 DEGPFCN----NKADCEN---LKCSH--KCSPTPRGAMCFC-PAGQNPNKTQCVD  415 (482)
Q Consensus       371 DE~~~C~----~~~~C~~---~~C~~--~C~~~~~~~~C~C-~~G~~~~~~~C~d  415 (482)
                      .+.. |.    .. +|..   .+|.+  +|.+    .+|.| ++||  .+..|+.
T Consensus       554 ~G~~-CeC~~~~~-~C~~~~g~~C~~~G~C~~----g~C~C~~~Gy--~G~~Ce~  600 (690)
T 3fcs_B          554 TGYY-CNCTTRTD-TCMSSNGLLCSGRGKCEC----GSCVCIQPGS--YGDTCEK  600 (690)
T ss_dssp             ESSS-SCEECCCT-TTBCTTSSBTSSSCEEET----TEEECCSTTC--BSTTSCB
T ss_pred             cCCC-CccCCCCC-cccCCCCCCCCCCCEEeC----CEEECCCCCc--cCCCcCc
Confidence            7776 76    33 6763   45654  5643    38999 9999  5666754

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=93.17  E-value=0.069  Score=38.09  Aligned_cols=37  Identities=35%  Similarity=0.843  Sum_probs=27.9

Q ss_pred             ccccccC--CCCCC--ceee--ecCCceEEecCCCeEECCCCCcccc
Q psy14262        415 DADECLI--DGSCD--QTCT--NTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       415 di~eC~~--~~~Cs--~~C~--n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      ++++|..  ..+|.  .+|+  +..++|.|.|++||+    |..|+.
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce~   44 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYS----GDRCQT   44 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCC----SSSSCC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCc----CCcCCc
Confidence            4677762  24784  5898  788999999999996    777854

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=93.17  E-value=0.029  Score=40.59  Aligned_cols=32  Identities=25%  Similarity=0.671  Sum_probs=24.4

Q ss_pred             CccCCCCcC--CC-----CCCCCCccccCCCCccCCCCCcc
Q psy14262        381 DCENLKCSH--KC-----SPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       381 ~C~~~~C~~--~C-----~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      ||.+.+|.+  +|     ++...+|+|.|++||  .+.+|+
T Consensus        10 eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~--~G~~CE   48 (55)
T 3u7u_G           10 EKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEF--TGDRCQ   48 (55)
T ss_dssp             STTTTTSCTTCEEEEECCC--CCCEEEEECTTE--ESTTSC
T ss_pred             CCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCC--cCCCcC
Confidence            777778876  78     466789999999999  677775

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=92.94  E-value=0.12  Score=53.34  Aligned_cols=94  Identities=27%  Similarity=0.678  Sum_probs=57.3

Q ss_pred             ccCCCCcccccccccCCCCCCCCCCCCCCCCCCC-----------CCcc-CCCCcC--CCCCCCCCccccCCCCccCCCC
Q psy14262        346 RCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNK-----------ADCE-NLKCSH--KCSPTPRGAMCFCPAGQNPNKT  411 (482)
Q Consensus       346 ~C~~g~~Ci~~~~~CDg~~dC~dgsDE~~~C~~~-----------~~C~-~~~C~~--~C~~~~~~~~C~C~~G~~~~~~  411 (482)
                      .|.+++.|++..+.|    .|+.|..+.. |...           .+|. +++|.+  .|  .++.|.|.|++||  .+.
T Consensus       204 ~C~~~G~C~~~~g~C----~C~~G~~G~~-Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C--~~~~~~C~C~~G~--~G~  274 (423)
T 2gy5_A          204 ACMNNGVCHEDTGEC----ICPPGFMGRT-CEKACELHTFGRTCKERCSGQEGCKSYVFC--LPDPYGCSCATGW--KGL  274 (423)
T ss_dssp             CCCTTCEECTTTCCE----ECCTTEESTT-SCEECCTTEESTTSCEECCSTTTTTTCCEE--ETTTTEEECCBTC--BSG
T ss_pred             CCCCCCEEECCCCcE----eCCCCccCCC-cccccCCCCCCCCcCccCCCCCCCCCCCEE--CCCCCeEEeCCCc--ccc
Confidence            577777888877778    7888877766 7631           0232 233332  23  2568999999999  455


Q ss_pred             Ccccc-------ccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        412 QCVDA-------DECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       412 ~C~di-------~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      .|+..       ..|...=.|.  ..|.+..   .|.|++||.    |..|..
T Consensus       275 ~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~----G~~Ce~  320 (423)
T 2gy5_A          275 QCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQ----GLQCER  320 (423)
T ss_dssp             GGCBCCCTTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCB----STTSCB
T ss_pred             cccCccCCCCcCCcccccccCCCCCEecCCC---ceECCCCCc----CCCCcc
Confidence            66530       1121111342  3676653   399999997    667754

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=92.90  E-value=0.0088  Score=44.34  Aligned_cols=38  Identities=24%  Similarity=0.629  Sum_probs=29.6

Q ss_pred             CccCCCCcC----CCCCCCCCccccCCCCccCC-CCCcccccccc
Q psy14262        381 DCENLKCSH----KCSPTPRGAMCFCPAGQNPN-KTQCVDADECL  420 (482)
Q Consensus       381 ~C~~~~C~~----~C~~~~~~~~C~C~~G~~~~-~~~C~di~eC~  420 (482)
                      +|.+.||.+    +|+++.++|+|.|++||  . +..|....+|.
T Consensus        13 ~C~snPC~nga~gtC~~~~g~y~C~C~~Gy--~~G~~C~~~~~C~   55 (61)
T 2k2s_B           13 ACSSNPCGPEAAGTCKETNSGYICRCNQGY--RISLDGTGNVTCI   55 (61)
T ss_dssp             HHHHCSSCSSSCCEEEECSSEEEEECCTTE--EEEECSSSCEEEE
T ss_pred             cCcCCCCcCCCccccccCCCceEeECCCCC--ccCCCCCCCCEec
Confidence            676667764    68999999999999999  5 66787666664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=91.77  E-value=0.059  Score=53.68  Aligned_cols=38  Identities=26%  Similarity=0.753  Sum_probs=25.9

Q ss_pred             Ccc-CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccccc
Q psy14262        381 DCE-NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADE  418 (482)
Q Consensus       381 ~C~-~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~e  418 (482)
                      ||. ++.|+|.|.+++++|+|.|++||  .+++++|..+.+
T Consensus         3 ec~~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~   43 (349)
T 3v64_C            3 ECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP   43 (349)
T ss_dssp             ------CCSSEECCC---CCEECCTTEEECTTSSCEEESSS
T ss_pred             ccCCCCCCcCeeecCCCCeEEECCCCccCCCCCCccccccc
Confidence            675 57899999999999999999999  567889976543

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=91.50  E-value=0.2  Score=34.21  Aligned_cols=27  Identities=33%  Similarity=0.812  Sum_probs=20.6

Q ss_pred             CCC--ceee--ecCCceEEecCCCeEECCCCCccc
Q psy14262        424 SCD--QTCT--NTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       424 ~Cs--~~C~--n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      +|.  ..|+  +..++|.|.|++||.    ++.|+
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce   40 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYS----GDRCQ   40 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEE----TTTTC
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCc----CCcCC
Confidence            563  4787  677889999999997    67774

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=91.41  E-value=0.15  Score=37.62  Aligned_cols=39  Identities=31%  Similarity=0.644  Sum_probs=28.4

Q ss_pred             cccCCCCCC--ceeee-----cCCceEEecCCCeEECCCCCccc-cCCCCCC
Q psy14262        418 ECLIDGSCD--QTCTN-----THLSYVCSCTEGYTLRPDGKSCT-AVNVPQD  461 (482)
Q Consensus       418 eC~~~~~Cs--~~C~n-----~~gsy~C~C~~Gy~l~~d~~tC~-didec~~  461 (482)
                      +|. ..+|.  ..|++     ..++|.|.|++||.    |..|. +|+++..
T Consensus         8 ~C~-~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~----G~~Ce~~i~~~~~   54 (63)
T 1hae_A            8 EKE-KTFCVNGGECFMVKDLSNPSRYLCKCQPGFT----GARCTENVPMKVQ   54 (63)
T ss_dssp             HHH-HTTSCTTCEEEEEESSSSSCCEEEECCTTEE----STTSCEECCSSCT
T ss_pred             CCC-CCcCCCCcEEecCCccCCCCCEEEECCCCCc----CCccCcCcCcccc
Confidence            443 34563  57886     67899999999997    78895 7887654

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=90.88  E-value=0.11  Score=36.94  Aligned_cols=33  Identities=21%  Similarity=0.569  Sum_probs=25.2

Q ss_pred             CccCC---CCcC--CCC--CCCCCccccCCCCccCCCCCccc
Q psy14262        381 DCENL---KCSH--KCS--PTPRGAMCFCPAGQNPNKTQCVD  415 (482)
Q Consensus       381 ~C~~~---~C~~--~C~--~~~~~~~C~C~~G~~~~~~~C~d  415 (482)
                      +|...   +|.+  +|+  +..++|+|.|++||  .+.+|+.
T Consensus         5 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~--~G~~Ce~   44 (53)
T 1egf_A            5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGY--SGDRCQT   44 (53)
T ss_dssp             CCCTTSSCSSCSSCEEEEESSSSCEEEECCTTC--CSSSSCC
T ss_pred             cCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCC--cCCcCCc
Confidence            55533   7765  788  78889999999999  6777853

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=90.87  E-value=0.16  Score=49.11  Aligned_cols=40  Identities=33%  Similarity=0.824  Sum_probs=34.8

Q ss_pred             Ccc---CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccccccc
Q psy14262        381 DCE---NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADECL  420 (482)
Q Consensus       381 ~C~---~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~eC~  420 (482)
                      ||.   +++|+|.|.++.++|+|.|++||  ..++++|...++|.
T Consensus         4 eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~   48 (283)
T 3f1s_B            4 ECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA   48 (283)
T ss_dssp             CCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTC
T ss_pred             ccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccccc
Confidence            665   47899999999999999999999  56788999888875

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=90.80  E-value=0.14  Score=44.91  Aligned_cols=35  Identities=37%  Similarity=0.756  Sum_probs=27.4

Q ss_pred             CCC--CceeeecCCceEEecCCCeEECCCCCccccCCCCCC
Q psy14262        423 GSC--DQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQD  461 (482)
Q Consensus       423 ~~C--s~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec~~  461 (482)
                      .+|  ...|+++.++|+|.|++||.    |..|+.+++|+.
T Consensus       125 ~~C~~~g~C~~~~~~~~c~C~~g~~----G~~Ce~~~~c~~  161 (162)
T 1g1s_A          125 MSCSKQGECLETIGNYTCSCYPGFY----GPECEYVRDDDD  161 (162)
T ss_dssp             TGGGGSEEEEECSSSEEEEECTTEE----STTSCEECC---
T ss_pred             CCCCCCCEEecCCCCceEeCCCCCc----CcccccCcccCC
Confidence            455  35899999999999999998    778999888753

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=90.32  E-value=0.11  Score=35.57  Aligned_cols=27  Identities=19%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CCcC--CCC--CCCCCccccCCCCccCCCCCcc
Q psy14262        386 KCSH--KCS--PTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       386 ~C~~--~C~--~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      +|.+  +|+  +..++|+|.|++||  .+.+|+
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~--~G~~Ce   40 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGY--SGDRCQ   40 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTE--ETTTTC
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCC--cCCcCC
Confidence            6665  686  67789999999999  566774

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=90.24  E-value=0.043  Score=40.62  Aligned_cols=38  Identities=21%  Similarity=0.543  Sum_probs=27.2

Q ss_pred             CccCCCCcC--CCCC-----CCCCccccCCCCccCCCCCcc-cccccc
Q psy14262        381 DCENLKCSH--KCSP-----TPRGAMCFCPAGQNPNKTQCV-DADECL  420 (482)
Q Consensus       381 ~C~~~~C~~--~C~~-----~~~~~~C~C~~G~~~~~~~C~-di~eC~  420 (482)
                      +|.+.+|.+  +|++     ..++|+|.|++||  .+..|+ +++++.
T Consensus         8 ~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf--~G~~Ce~~i~~~~   53 (63)
T 1hae_A            8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGF--TGARCTENVPMKV   53 (63)
T ss_dssp             HHHHTTSCTTCEEEEEESSSSSCCEEEECCTTE--ESTTSCEECCSSC
T ss_pred             CCCCCcCCCCcEEecCCccCCCCCEEEECCCCC--cCCccCcCcCccc
Confidence            444556654  6764     5678999999999  677785 677664

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=90.21  E-value=0.19  Score=51.69  Aligned_cols=55  Identities=31%  Similarity=0.805  Sum_probs=36.6

Q ss_pred             CCCCCCCCccccCCCCccCCCCCcccc-----------ccccCCCCCCc--eeeecCCceEEecCCCeEECCCCCccc
Q psy14262        390 KCSPTPRGAMCFCPAGQNPNKTQCVDA-----------DECLIDGSCDQ--TCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       390 ~C~~~~~~~~C~C~~G~~~~~~~C~di-----------~eC~~~~~Cs~--~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      +|.+  ..+.|.|++||  .+..|+..           ++|...+.|.+  .|  .+++|+|.|++||.    +..|.
T Consensus       210 ~C~~--~~g~C~C~~G~--~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C--~~~~~~C~C~~G~~----G~~C~  277 (423)
T 2gy5_A          210 VCHE--DTGECICPPGF--MGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC--LPDPYGCSCATGWK----GLQCN  277 (423)
T ss_dssp             EECT--TTCCEECCTTE--ESTTSCEECCTTEESTTSCEECCSTTTTTTCCEE--ETTTTEEECCBTCB----SGGGC
T ss_pred             EEEC--CCCcEeCCCCc--cCCCcccccCCCCCCCCcCccCCCCCCCCCCCEE--CCCCCeEEeCCCcc----ccccc
Confidence            5654  46789999999  45566531           23443455643  45  46889999999997    55554

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=89.69  E-value=0.24  Score=34.23  Aligned_cols=37  Identities=30%  Similarity=0.691  Sum_probs=25.2

Q ss_pred             ccccccC--CCCCC-ceeeecC--CceEEecCCCeEECCCCCcccc
Q psy14262        415 DADECLI--DGSCD-QTCTNTH--LSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       415 di~eC~~--~~~Cs-~~C~n~~--gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      ++++|..  ..+|. +.|+...  ++|.|.|++||+    |..|+-
T Consensus         2 ~i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~Gyt----G~~Ce~   43 (46)
T 1k36_A            2 SITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYT----GVRCEH   43 (46)
T ss_dssp             CEECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCS----STTSCC
T ss_pred             ccccCCCCCCCCCCCCEeeccCCCCCEEEECCCCCc----cCCCCc
Confidence            3556652  25674 4788754  689999999997    667753

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=89.46  E-value=0.14  Score=55.96  Aligned_cols=88  Identities=27%  Similarity=0.657  Sum_probs=53.3

Q ss_pred             cccCCCCcccccccccCCCCCCC------CCCCCCCCCC--CCCCcc---CCCCcC----CCCCCCCCccccCCCCccCC
Q psy14262        345 LRCGSSNQCVALSKFCDGKPDCS------NGEDEGPFCN--NKADCE---NLKCSH----KCSPTPRGAMCFCPAGQNPN  409 (482)
Q Consensus       345 f~C~~g~~Ci~~~~~CDg~~dC~------dgsDE~~~C~--~~~~C~---~~~C~~----~C~~~~~~~~C~C~~G~~~~  409 (482)
                      ..|.+++.|+..  .|    .|.      .|+-+.. |.  .. .|.   ..+|..    +|..    .+|.|++||  .
T Consensus       482 ~~Cs~~G~C~~G--~C----~C~~~~~~~~G~~G~~-Ce~~~~-~C~~~~~~~C~~~~~G~C~~----g~C~C~~G~--~  547 (687)
T 3k6s_B          482 IICSGLGDCVCG--QC----LCHTSDVPGKLIYGQY-CECDTI-NCERYNGQVCGGPGRGLCFC----GKCRCHPGF--E  547 (687)
T ss_dssp             CGGGSSEEEETT--EE----EECCCCSTTCCEESTT-SCEESS-CSCEETTEETSHHHHEEEET----TEEEECTTC--C
T ss_pred             CcCCCCCEEeCC--EE----EcCCCCCCCCCccccc-cccccc-cccCCCCcCcCCCCCCeEEC----CEEEcCCCC--c
Confidence            357776688742  55    777      6666655 75  33 565   224542    4542    379999999  5


Q ss_pred             CCCcc---ccccccC--CCCCC--ceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        410 KTQCV---DADECLI--DGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       410 ~~~C~---di~eC~~--~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      +..|.   +++.|..  ...|+  ..|..    .+|.|.+||.    |..|.
T Consensus       548 G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~----g~C~C~~Gy~----G~~Ce  591 (687)
T 3k6s_B          548 GSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHSGYQ----LPLCQ  591 (687)
T ss_dssp             STTSCSCCSSCTTBCTTCSBTSSSCCBCS----SCBCCSTTCC----TTTTC
T ss_pred             CCCCccCCCCCCCCCCCCCCCCCCCcCCC----CEEECCCCCc----CCCCC
Confidence            66675   2456652  23563  35655    4699999987    55554

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=88.56  E-value=0.072  Score=46.78  Aligned_cols=38  Identities=24%  Similarity=0.549  Sum_probs=28.9

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCcccccccc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDADECL  420 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~di~eC~  420 (482)
                      +|...+|++  +|.+..++|.|.|++||  .+..|+.+++|.
T Consensus       121 ~c~~~~C~~~g~C~~~~~~~~c~C~~g~--~G~~Ce~~~~c~  160 (162)
T 1g1s_A          121 SCQDMSCSKQGECLETIGNYTCSCYPGF--YGPECEYVRDDD  160 (162)
T ss_dssp             CCCTTGGGGSEEEEECSSSEEEEECTTE--ESTTSCEECC--
T ss_pred             CCcCCCCCCCCEEecCCCCceEeCCCCC--cCcccccCcccC
Confidence            455556654  78888999999999999  667899888886

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=87.90  E-value=0.14  Score=45.47  Aligned_cols=30  Identities=37%  Similarity=0.846  Sum_probs=25.9

Q ss_pred             CcCCCCCCCCCccccCCCCc--cCCCCCcccc
Q psy14262        387 CSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDA  416 (482)
Q Consensus       387 C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di  416 (482)
                      |++.|.+++++|.|.|++||  ..++++|.++
T Consensus       137 C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~  168 (170)
T 1szb_A          137 CDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ  168 (170)
T ss_dssp             SSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred             cCCccccCCCCEEEeCCCCcEECCCCCccccc
Confidence            88899999999999999999  4677888654

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=87.85  E-value=0.18  Score=38.29  Aligned_cols=40  Identities=40%  Similarity=0.903  Sum_probs=31.2

Q ss_pred             cccccc-CCCCCC--ceeeecCCceEEe---------------------------cCCCeEECCCCCcccc
Q psy14262        415 DADECL-IDGSCD--QTCTNTHLSYVCS---------------------------CTEGYTLRPDGKSCTA  455 (482)
Q Consensus       415 di~eC~-~~~~Cs--~~C~n~~gsy~C~---------------------------C~~Gy~l~~d~~tC~d  455 (482)
                      +|+||. ....|.  +.|+|++|+|+|.                           |++||+|. .+.+|.|
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~Gy~~~-~~~~C~D   71 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPPPVPPAQHPNPCPPGYEPD-DQDSCVD   71 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCSSCCCSSCSCSSCCCSCTTEEEE-CCCCSCC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCCccccccccCccccCCCCCeeeC-CCCcccC
Confidence            057786 456784  5899999999999                           99999997 5666764

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=87.44  E-value=0.086  Score=51.08  Aligned_cols=40  Identities=30%  Similarity=0.583  Sum_probs=33.1

Q ss_pred             Ccc--CCCCcC--CCCCCCCCccccCCCCccCCCCCcccccccc
Q psy14262        381 DCE--NLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDADECL  420 (482)
Q Consensus       381 ~C~--~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~di~eC~  420 (482)
                      ||.  .+.|..  .|.|++++|.|.|++||..++..|.++++..
T Consensus         7 EC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~d~d~Pq   50 (285)
T 1gl4_A            7 TCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQ   50 (285)
T ss_dssp             CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEEETTCEE
T ss_pred             hccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCCCCCCCc
Confidence            676  567764  7999999999999999966788999887743

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.40  E-value=0.12  Score=53.96  Aligned_cols=75  Identities=27%  Similarity=0.770  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCcC-CCCCCCCCccccCCCCccCCCCCccccccccCCCCCC--ceeeecCCceEEecC
Q psy14262        365 DCSNGEDEGPFCNNKADCENLKCSH-KCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCD--QTCTNTHLSYVCSCT  441 (482)
Q Consensus       365 dC~dgsDE~~~C~~~~~C~~~~C~~-~C~~~~~~~~C~C~~G~~~~~~~C~di~eC~~~~~Cs--~~C~n~~gsy~C~C~  441 (482)
                      .|..+.-... |... +|.. +|.+ +|.+.   ++|.|++||  .+..|. +++|..  +|+  ..|++.   ++|.|.
T Consensus       380 ~C~~~~~g~~-c~~~-~C~~-~C~nG~C~~~---~~C~C~~G~--~G~~C~-~~~C~~--~C~~~g~C~~~---~~C~C~  445 (463)
T 2wg3_C          380 ECRATVQPAQ-TLTS-ECSR-LCRNGYCTPT---GKCCCSPGW--EGDFCR-TAKCEP--ACRHGGVCVRP---NKCLCK  445 (463)
T ss_dssp             GGCCCCCCCC-CCCC-HHHH-HCCSEEECTT---SCEEECTTE--ESTTSC-EECC------------------------
T ss_pred             cCCCCCcCCC-Cccc-cccC-CCCCCccCCC---CeECCCCCc--CCCcCC-cCcCCC--CCCCCCEECCC---CEEECC
Confidence            4454544444 6554 5653 3554 66542   489999999  566784 567762  774  378765   799999


Q ss_pred             CCeEECCCCCccccCC
Q psy14262        442 EGYTLRPDGKSCTAVN  457 (482)
Q Consensus       442 ~Gy~l~~d~~tC~did  457 (482)
                      +||.    +..|...+
T Consensus       446 ~G~~----G~~C~~~~  457 (463)
T 2wg3_C          446 KGYL----GPQCEQVD  457 (463)
T ss_dssp             ----------------
T ss_pred             CCcc----cCCCCCCc
Confidence            9997    67776544

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=87.25  E-value=0.35  Score=39.39  Aligned_cols=66  Identities=24%  Similarity=0.464  Sum_probs=49.3

Q ss_pred             CCCC-CCCCccccCCCCccCCCCCcccccc-cc-CCCCC--CceeeecC-CceEEecCCCeEE-CCCCCcccc
Q psy14262        390 KCSP-TPRGAMCFCPAGQNPNKTQCVDADE-CL-IDGSC--DQTCTNTH-LSYVCSCTEGYTL-RPDGKSCTA  455 (482)
Q Consensus       390 ~C~~-~~~~~~C~C~~G~~~~~~~C~di~e-C~-~~~~C--s~~C~n~~-gsy~C~C~~Gy~l-~~d~~tC~d  455 (482)
                      .|.. .++.-.|.|..||..++..|..++. |. .++.|  ...|..+. .-..|.|.++|.- ..+|..|..
T Consensus        23 ~C~r~~~G~e~CrCl~gY~~dg~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~~~~~~GvfC~~   95 (105)
T 1n1i_A           23 ACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEPLFEGVFCSS   95 (105)
T ss_dssp             EEEECTTSCEEEEECTTEEECSSSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTCCEEGGGTEECC
T ss_pred             CeEECCCCCEeEEEECCeeccCCEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCCccccceEEECC
Confidence            4554 6777899999999667888988888 76 67889  46898884 7789999999742 224555543

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=86.66  E-value=0.11  Score=36.85  Aligned_cols=41  Identities=32%  Similarity=0.707  Sum_probs=27.7

Q ss_pred             ccccCCCCccCCCCCccccccccCCCCCCceeee----cCCceEEecCCCeEECCCCCccc
Q psy14262        398 AMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTN----THLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       398 ~~C~C~~G~~~~~~~C~di~eC~~~~~Cs~~C~n----~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      ++|.|++||.        .+.|.+.    ..|++    ..++|.|.|++||.    |..|+
T Consensus         3 ~~C~C~~g~~--------~~pC~NG----GtC~~~~~~~~~~y~C~C~~Gf~----G~~Ce   47 (52)
T 3ca7_A            3 PTYKCPETFD--------AWYCLND----AHCFAVKIADLPVYSCECAIGFM----GQRCE   47 (52)
T ss_dssp             CCBCCCHHHH--------HHTSCTT----CEEEEEEETTEEEEEEECCTTEE----STTSC
T ss_pred             eeeECCCCCc--------CCcCCCC----CEEecCccCCCCCEEEECCCCCc----CCCCc
Confidence            4688999882        1233322    35665    35689999999998    66775

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=85.42  E-value=0.19  Score=34.76  Aligned_cols=28  Identities=25%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             CCCcC-CCCCC--CCCccccCCCCccCCCCCcc
Q psy14262        385 LKCSH-KCSPT--PRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       385 ~~C~~-~C~~~--~~~~~C~C~~G~~~~~~~C~  414 (482)
                      ++|.+ +|...  .++|.|.|++||  .+.+|+
T Consensus        12 ~pC~nG~C~~~~~~~~~~C~C~~Gy--tG~~Ce   42 (46)
T 1k36_A           12 GYCLHGQCIYLVDMSQNYCRCEVGY--TGVRCE   42 (46)
T ss_dssp             SSCSSEEEEEETTTTEEEEEECTTC--SSTTSC
T ss_pred             CCCCCCEeeccCCCCCEEEECCCCC--ccCCCC
Confidence            56665 67653  368999999999  667775

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=83.77  E-value=0.47  Score=38.35  Aligned_cols=56  Identities=25%  Similarity=0.613  Sum_probs=42.9

Q ss_pred             CCCC-CCCCccccCCCCccCCCCCcccc--cccc-CCCCCC--ceeeecC-----CceEEecCCCeE
Q psy14262        390 KCSP-TPRGAMCFCPAGQNPNKTQCVDA--DECL-IDGSCD--QTCTNTH-----LSYVCSCTEGYT  445 (482)
Q Consensus       390 ~C~~-~~~~~~C~C~~G~~~~~~~C~di--~eC~-~~~~Cs--~~C~n~~-----gsy~C~C~~Gy~  445 (482)
                      .|.. .++...|.|.+||..++..|..+  ..|+ .++.|.  ..|..+.     +...|.|.+||.
T Consensus        17 ~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C           17 GCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             EEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             CeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            4544 46788999999996677889776  4787 558883  5888774     568999999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=83.07  E-value=0.73  Score=49.78  Aligned_cols=53  Identities=36%  Similarity=0.653  Sum_probs=41.6

Q ss_pred             hhhhhccCCCCCCcceeeCCceecCceeeCCCCCCCcccCCCCCCccccccCCC
Q psy14262        106 ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS  159 (482)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~ci~~~~~cdg~~dc~dw~d~~~~sdE~~~~~~~  159 (482)
                      .+|+++.|+|+.+..+. .+.=+|+++..|....-+||.|+..+..+.+.++|.
T Consensus       146 ~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          146 PKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             CEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            46788889998887765 356688999999888889999988887777666553

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=80.37  E-value=0.49  Score=41.17  Aligned_cols=31  Identities=29%  Similarity=0.670  Sum_probs=25.6

Q ss_pred             CCCcCCCCCCCCCccccCCCCc--cCCCCCccc
Q psy14262        385 LKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVD  415 (482)
Q Consensus       385 ~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~d  415 (482)
                      .+|++.|.+.+++|.|.|++||  ..++++|.+
T Consensus       126 ~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          126 VPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             CCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence            4688889999999999999999  456777753

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=80.27  E-value=0.76  Score=50.10  Aligned_cols=61  Identities=28%  Similarity=0.800  Sum_probs=38.7

Q ss_pred             cccCC--CCcccccccccCCCCCCCCCCCCCCCCC----CCCCccC---CCCcC--CCCCCCCCccccCCCCccCCCCCc
Q psy14262        345 LRCGS--SNQCVALSKFCDGKPDCSNGEDEGPFCN----NKADCEN---LKCSH--KCSPTPRGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       345 f~C~~--g~~Ci~~~~~CDg~~dC~dgsDE~~~C~----~~~~C~~---~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C  413 (482)
                      ..|.+  ++.|+.  .+|    .|..|+-+.. |.    .. .|..   .+|+.  +|..    ++|.|++||  .+..|
T Consensus       525 ~~C~~~~~G~C~~--g~C----~C~~G~~G~~-Cec~~~~~-~C~~~~g~~Cs~~G~C~~----g~C~C~~Gy--~G~~C  590 (687)
T 3k6s_B          525 QVCGGPGRGLCFC--GKC----RCHPGFEGSA-CQCERTTE-GCLNPRRVECSGRGRCRC----NVCECHSGY--QLPLC  590 (687)
T ss_dssp             EETSHHHHEEEET--TEE----EECTTCCSTT-SCSCCSSC-TTBCTTCSBTSSSCCBCS----SCBCCSTTC--CTTTT
T ss_pred             cCcCCCCCCeEEC--CEE----EcCCCCcCCC-CccCCCCC-CCCCCCCCCCCCCCcCCC----CEEECCCCC--cCCCC
Confidence            34665  447764  245    8888888777 86    23 5653   25654  5654    579999999  66667


Q ss_pred             cccccc
Q psy14262        414 VDADEC  419 (482)
Q Consensus       414 ~di~eC  419 (482)
                      +.-..|
T Consensus       591 e~c~~C  596 (687)
T 3k6s_B          591 QECPGC  596 (687)
T ss_dssp             CCCTTS
T ss_pred             CCCCCC
Confidence            643334

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	482
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	7e-10
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	6e-08
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	8e-08
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	8e-04
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	8e-04
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	1e-07
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-07
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	0.001
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	0.001
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-07
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	0.002
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	0.002
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	2e-07
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	9e-04
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	9e-04
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	2e-07
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	4e-07
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	4e-07
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	0.003
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	0.003
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	5e-07
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	8e-04
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	8e-04
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-07
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	0.002
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	0.002
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	6e-07
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	7e-07
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	2e-06
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-06
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	2e-06
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	3e-06
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	4e-06
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	0.001
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	0.001
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	4e-06
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	8e-06
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	1e-05
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	1e-05
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	0.001
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	0.001
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-05
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-05
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-05
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	1e-05
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	0.003
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	0.003
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	2e-05
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	2e-05
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	3e-05
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	3e-05
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	4e-05
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	4e-05
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	5e-05
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	0.002
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	0.002
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	8e-05
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	0.003
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	0.003
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	8e-04
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	0.003

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 7e-10
 Identities = 18/40 (45%), Positives = 21/40 (52%)

Query: 417 DECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV 456
           DEC    +C Q C N    Y C C EG+ L P  K+C AV
Sbjct: 2   DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 6e-08
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 9/51 (17%)

Query: 414 VDADECLI---------DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
           VD DEC              C   C N    Y CSC  GY L+ D  SC A
Sbjct: 2   VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 8e-08
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQ 244
           +C PG+F+C   +CI E WKCDG  DC  D SDE     HQ
Sbjct: 5   QCQPGEFACANSRCIQERWKCDGDNDC-LDNSDEAPALCHQ 44

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 199
           C P E  C + ++C+     CDG  DC +  DE P
Sbjct: 6   CQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAP 39

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 374
           C P E  C + ++C+     CDG  DC +  DE P
Sbjct: 6   CQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAP 39

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 417 DECLID----GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV 456
           DEC         CD  C N    Y CSC  GY L  +  +C+A+
Sbjct: 2   DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 203 AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           A C P +F C  G CI  S +CD   DC +D SDE  
Sbjct: 1   ATCRPDEFQCSDGNCIHGSRQCDREYDC-KDMSDEVG 36

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C P+E +C     C+  S+ CD + DC +  DE
Sbjct: 3   CRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDE 34

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C P+E +C     C+  S+ CD + DC +  DE
Sbjct: 3   CRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDE 34

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 202 NAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           +  C+  QF C  G+CIPE W CDG  DC  D SDE +
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDC-GDYSDETH 38

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C   + +C S  +C+     CDG  DC +  DE
Sbjct: 5   CSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDE 36

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C   + +C S  +C+     CDG  DC +  DE
Sbjct: 5   CSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDE 36

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C+  +F C  GKCI   + CD   DC  DGSDE +
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDC-LDGSDEAS 36

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 9e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C   E RC    +C++    CD   DC +G DE
Sbjct: 3   CSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDE 34

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 9e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C   E RC    +C++    CD   DC +G DE
Sbjct: 3   CSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDE 34

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 417 DEC--LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
           +EC   +D  C   C N    Y CSC   Y L  D K+C  
Sbjct: 1   NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 41

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 17/35 (48%), Positives = 19/35 (54%)

Query: 423 GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
           G CDQ C     S VCSC  GYTL  +GK+C    
Sbjct: 8   GDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 42

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 198 GPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           G      C   +F C  GKCI   W CDG  +C +DGSDE  
Sbjct: 1   GSAVGDRCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQ 41

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C  NE +C    +C++    CDG  +C +G DE
Sbjct: 8   CERNEFQCQD-GKCISYKWVCDGSAECQDGSDE 39

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C  NE +C    +C++    CDG  +C +G DE
Sbjct: 8   CERNEFQCQD-GKCISYKWVCDGSAECQDGSDE 39

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 5e-07
 Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C P  F C    CIP+ W CD   DC EDGSDE  
Sbjct: 3   CGPASFQCNSSTCIPQLWACDNDPDC-EDGSDEWP 36

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 8e-04
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 199
           C P   +C S + C+     CD  PDC +G DE P
Sbjct: 3   CGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWP 36

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 8e-04
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 374
           C P   +C S + C+     CD  PDC +G DE P
Sbjct: 3   CGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWP 36

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 5e-07
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C+  +F C  G+CI  SW+CDG  DC +D SDE N
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDC-KDKSDEEN 35

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           C   E  C S  +C+  S  CDG PDC +  DE
Sbjct: 2   CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDE 33

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           C   E  C S  +C+  S  CDG PDC +  DE
Sbjct: 2   CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDE 33

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 6e-07
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 417 DECLI----DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
           DEC +      +CD  C N    + CSC  GY L  + ++C+ 
Sbjct: 2   DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (104), Expect = 7e-07
 Identities = 15/35 (42%), Positives = 16/35 (45%)

Query: 423 GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
           G CDQ C        CSC  GY L  D KSC +  
Sbjct: 6   GGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTE 40

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 11/35 (31%), Positives = 11/35 (31%)

Query: 423 GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
           G C   C        CSC  GY L  D   C    
Sbjct: 7   GGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 41

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
             P +F C  G+CI     C+   DC  D SDEP 
Sbjct: 7   EGPNKFKCHSGECITLDKVCNMARDC-RDWSDEPI 40

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 415 DADECLID--GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
           D DEC           C NT  S+ C C  GY L  D + C
Sbjct: 2   DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 18/154 (11%)

Query: 30  DCSTDDI--VDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQI 87
           D S   I        +     ++ L     +AL+   R       Q   +   ++   Q 
Sbjct: 54  DISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113

Query: 88  NDLLNSWDLPAPEIFPLDE---------------RLEKAGMHGENRSPLVTKNIQWPSSL 132
             L ++     P     D                ++E + M G NR  L   N+  P+ L
Sbjct: 114 RVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL 172

Query: 133 VIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
             D     L W D+  +  E +         +  
Sbjct: 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 202 NAECTPGQFSC--GMGKCIPESWKCDGFVDCLEDGSDEPN 239
           +  C  G FSC   + +CIP+ W+CDG VDC ++GSDE  
Sbjct: 2   SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDC-DNGSDEQG 40

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 162 AVLCHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDE 197
           +V C   +  CG    +C+     CDG+ DC NG DE
Sbjct: 2   SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 337 AVLCHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDE 372
           +V C   +  CG    +C+     CDG+ DC NG DE
Sbjct: 2   SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 415 DADECLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
           D +ECL         C NT  SY+C C   + L P    C 
Sbjct: 2   DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV 42

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 8e-06
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 415 DADECLID--GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
           D DEC  D        C NT  SY C C  G+ L P+  +C
Sbjct: 1   DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTL-RPDGKSC 453
           D DEC   G C   C N   ++ C C     L    G  C
Sbjct: 1   DIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 205 CTPGQFSCGM--GKCIPESWKCDGFVDCLEDGSDEPN 239
           C   +  CG    +CI + + CDG  DC  +G DE +
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDC-RNGEDEKD 38

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 165 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDE 197
           C  +E +CG  + QC++    CDG  DC NGEDE
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 340 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDE 372
           C  +E +CG  + QC++    CDG  DC NGEDE
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 205 CTPGQFSCGM-GKCIPESWKCDGFVDCLEDGSDEPN 239
           C   +F C + G CIP  W+CDG  DC  D SDE +
Sbjct: 4   CHTDEFQCRLDGLCIPLRWRCDGDTDC-MDSSDEKS 38

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
           CH +E +C     C+ L   CDG  DC +  DE
Sbjct: 4   CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
           CH +E +C     C+ L   CDG  DC +  DE
Sbjct: 4   CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 205 CTPGQFSC--GMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C   + SC     +CIP SW+CDG  DC + G DE N
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDC-DSGEDEEN 36

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 197
           C  +E+ CG+ S QC+ +S  CDG+ DC +GEDE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 340 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 372
           C  +E+ CG+ S QC+ +S  CDG+ DC +GEDE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 417 DECLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
           +ECL + G C   C +  + Y C C +G+ L    + C
Sbjct: 3   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRC 39

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 423 GSCDQTCTNTH-LSYVCSCTEGYTLRPDGKSCTAV 456
           G C+Q C++       C C EGY+L  DG SCT  
Sbjct: 7   GGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 105 DERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
             +++K G++G +   LVT+NIQWP+ + +D     LYW DS L+++ S+ V+G +   +
Sbjct: 142 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201

Query: 165 CHPNE 169
               +
Sbjct: 202 LEDEK 206

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 205 CTPGQFSC-----GMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C PGQF C       G+C P+ W CDG  DC +DG DE  
Sbjct: 2   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDC-DDGRDEWG 40

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 423 GSCDQTCTNTH-LSYVCSCTEGYTLRPDGKSCTAV 456
           G C+Q C N+     VCSCTEGY L  + KSC   
Sbjct: 8   GRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA 42

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 413 CVDADECLI-DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
            VD DEC   D      C NT  SY C C  GY L   G  C 
Sbjct: 2   AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECV 42

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 205 CTPGQFSC--GMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C   +  C   + +CI +   CDG  DC  DGSDE  
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDC-RDGSDEDP 38

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 165 CHPNELRC-GSSNQCVALSKFCDGKPDCSNGEDEGP 199
           C  +E  C G   +C+    FCDG+ DC +G DE P
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP 38

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 340 CHPNELRC-GSSNQCVALSKFCDGKPDCSNGEDEGP 374
           C  +E  C G   +C+    FCDG+ DC +G DE P
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP 38

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 37.9 bits (88), Expect = 8e-05
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 205 CTPGQFSC--GMGKCIPESWKCDGFVDCLEDGSDEPN 239
           C    F C     +CI +   CDG  DC  +  DE  
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDC-HNAHDEDP 37

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 165 CHPNELRC-GSSNQCVALSKFCDGKPDCSNGEDEGP 199
           C     +C G+  +C++    CDG  DC N  DE P
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP 37

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 340 CHPNELRC-GSSNQCVALSKFCDGKPDCSNGEDEGP 374
           C     +C G+  +C++    CDG  DC N  DE P
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP 37

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)

Query: 417 DECLID-GSCDQTC------TNTHLSYVCSCTEGYTLRPDGKSCTA 455
           +   +  G C   C            + C+C +G  L  D +SC  
Sbjct: 5   ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 50

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 415 DADECLI--DGSCDQTCTNTHLSYVCSCTEGYTL-RPDGKSC 453
           D DEC I  D      C NT   + C C EGY       K+C
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	482
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.15
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.09
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.08
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.06
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.06
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.03
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.03
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.02
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.02
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.01
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.0
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.99
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	98.98
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.96
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	98.95
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	98.95
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	98.93
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	98.93
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.93
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	98.93
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	98.91
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.88
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.86
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	98.83
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.82
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	98.82
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	98.76
d1nt0a3	45	Mannose-binding protein associated serine protease	98.75
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	98.73
d1szba2	45	Mannose-binding protein associated serine protease	98.7
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.69
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.66
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.66
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.64
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.58
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.55
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.49
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	98.4
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	98.39
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	98.33
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.1
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.0
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	97.99
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	97.82
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	97.59
d1nt0a3	45	Mannose-binding protein associated serine protease	97.45
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.43
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.42
d1szba2	45	Mannose-binding protein associated serine protease	97.4
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.13
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.12
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	96.93
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.8
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	96.76
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.61
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	96.59
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	96.47
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	96.46
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	96.44
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	96.12
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	96.12
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	96.09
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	96.02
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	95.99
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	95.84
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	95.79
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	95.75
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	95.41
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	95.34
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	95.14
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.01
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	94.96
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	94.74
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	94.62
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	93.96
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	93.83
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	93.69
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	93.45
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	93.4
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	91.23
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	90.65
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	89.66
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	88.64
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	87.48
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	87.44
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	86.81
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	84.17
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	80.62

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=83.37  Aligned_cols=40  Identities=33%  Similarity=0.839  Sum_probs=35.6

Q ss_pred             CCcccCCCCeeeCC-CCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          1 MIHQCFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         1 ~~~~C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      +..+|.++||+|.. +++|||..|+|||+.||+     |+|||.+|
T Consensus         1 ls~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~-----DgsDE~~C   41 (41)
T d1f5ya2           1 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD-----NGSDEQGC   41 (41)
T ss_dssp             TTTTCCSSCEECCSSCCCEECGGGTTCSCCCSS-----SCTTTTTC
T ss_pred             CccccCCCceECCCCCCCCccchhcCCCcCcCc-----CcccccCC
Confidence            46789999999963 689999999999999998     99999864

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.2e-11  Score=80.00  Aligned_cols=36  Identities=36%  Similarity=0.791  Sum_probs=33.6

Q ss_pred             ccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         4 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      +|.++||+|. +|+|||..|+|||+.||+     |+|||..|
T Consensus         1 PC~~~~f~C~-~g~Ci~~~~~CDg~~DC~-----dgsDE~~C   36 (37)
T d1ajja_           1 PCSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDEENC   36 (37)
T ss_dssp             CCCTTCEECT-TSCEECGGGTTSSSCCST-----TCGGGTTC
T ss_pred             CCCCCceEcC-CCCEECchhcCCCCCcCC-----CCchhhcc
Confidence            5899999998 899999999999999998     99999865

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.4e-11  Score=80.85  Aligned_cols=36  Identities=33%  Similarity=0.821  Sum_probs=34.1

Q ss_pred             ccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         4 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      .|.+++|+|. +|+|||..|+|||..||+     |+|||..|
T Consensus         2 tC~~~~f~C~-~g~CI~~~~~CDg~~DC~-----DgsDE~~C   37 (39)
T d2fcwb1           2 TCSQAEFRCH-DGKCISRQFVCDSDRDCL-----DGSDEASC   37 (39)
T ss_dssp             CCCTTEEECT-TSCEEEGGGTTSSSCCST-----TCTTTTTH
T ss_pred             cCCCCCEEcC-CCCEEcchhcCcCcCcCc-----CCchhcCC
Confidence            6999999998 899999999999999998     99999876

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3e-11  Score=80.26  Aligned_cols=36  Identities=36%  Similarity=0.685  Sum_probs=34.0

Q ss_pred             ccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         4 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      +|.+++|+|. ||+|||..|+|||+.||+     |+|||..|
T Consensus         2 sC~~~~f~C~-~g~CI~~~~~CDg~~DC~-----DgsDE~~C   37 (39)
T d1f8za_           2 TCRPDEFQCS-DGNCIHGSRQCDREYDCK-----DMSDEVGC   37 (39)
T ss_dssp             CCCTTEEECS-SSCEEETTTSSSCCCCST-----TSGGGSSS
T ss_pred             CCCCCceEeC-CCCeEChhhcCCCCCcCC-----CCchhccC
Confidence            6999999998 899999999999999998     99999876

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.5e-11  Score=80.88  Aligned_cols=39  Identities=38%  Similarity=0.877  Sum_probs=35.7

Q ss_pred             cccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCccccc
Q psy14262          3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK   46 (482)
Q Consensus         3 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~~   46 (482)
                      ..|.++||+|..+++|||..|+|||+.||+     |+|||.+|.
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~-----DgsDE~~C~   40 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCM-----DSSDEKSCE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSS-----SSTTTTTCC
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCC-----CcchhccCC
Confidence            479999999976899999999999999998     999998763

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.7e-11  Score=81.30  Aligned_cols=38  Identities=34%  Similarity=0.871  Sum_probs=35.1

Q ss_pred             CcccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          2 IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         2 ~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      ...|.+++|+|. ||+|||..|+|||+.||.     |+|||.+|
T Consensus         5 ~~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~-----DgsDE~~c   42 (44)
T d1f5ya1           5 GDRCERNEFQCQ-DGKCISYKWVCDGSAECQ-----DGSDESQE   42 (44)
T ss_dssp             CCCCCSSSEECS-SSCEECTTTTTSSSCSSS-----SSGGGTTS
T ss_pred             CCccCCCCeEcC-CCCeEChhHcCCCcCcCC-----CCCcCCCC
Confidence            468999999998 899999999999999998     99999865

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.9e-11  Score=78.96  Aligned_cols=36  Identities=44%  Similarity=0.953  Sum_probs=22.1

Q ss_pred             CCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCc
Q psy14262        204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNT  240 (482)
Q Consensus       204 ~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C  240 (482)
                      +|++++|+|.+|.||+.+|+|||..|| .|||||.+|
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC-~DgsDE~~C   37 (39)
T d2fcwb1           2 TCSQAEFRCHDGKCISRQFVCDSDRDC-LDGSDEASC   37 (39)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCS-TTCTTTTTH
T ss_pred             cCCCCCEEcCCCCEEcchhcCcCcCcC-cCCchhcCC
Confidence            455566666666666666666666666 666666555

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5e-11  Score=79.20  Aligned_cols=35  Identities=43%  Similarity=0.907  Sum_probs=33.0

Q ss_pred             ccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCccc
Q psy14262          4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW   44 (482)
Q Consensus         4 ~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~   44 (482)
                      +|.++||+|. +|.|||..|+|||+.||+     |+|||..
T Consensus         2 tC~~~~f~C~-~g~CI~~~~~CDg~~DC~-----DgsDE~~   36 (39)
T d2fcwb2           2 TCGPASFQCN-SSTCIPQLWACDNDPDCE-----DGSDEWP   36 (39)
T ss_dssp             HCCTTEEECT-TSCEEEGGGTTSSSCCST-----TCGGGCG
T ss_pred             ccCCCceEcC-CCCeEChhhcCCCCCCCC-----CCCcCCC
Confidence            6899999998 899999999999999998     9999975

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.02  E-value=3.5e-11  Score=80.97  Aligned_cols=39  Identities=28%  Similarity=0.586  Sum_probs=34.6

Q ss_pred             cccCCCCeeeCC-CCCeecCccccCCCCCCCCCCCCCCCCccccc
Q psy14262          3 HQCFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK   46 (482)
Q Consensus         3 ~~C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~~   46 (482)
                      ..|.++||+|.. +++|||..|+|||..||+     |+|||.+|.
T Consensus         1 P~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~-----dgsDE~~C~   40 (41)
T d2gtlo2           1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCR-----NGEDEKDCT   40 (41)
T ss_dssp             CSSCTTEEECCSSSCCEEEGGGTTSSSCCSS-----SCHHHHCCC
T ss_pred             CCCCcCeeECCCCCCcEeechhccCCCCcCC-----CCchhccCc
Confidence            369999999963 689999999999999998     999998763

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.5e-11  Score=81.37  Aligned_cols=38  Identities=42%  Similarity=1.002  Sum_probs=35.7

Q ss_pred             CcccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          2 IHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         2 ~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      .++|.+++|+|. ||+|||..|+|||+.||+     |+|||..|
T Consensus         2 ~~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~-----DgsDE~~c   39 (44)
T d1j8ea_           2 SHSCSSTQFKCN-SGRCIPEHWTCDGDNDCG-----DYSDETHA   39 (44)
T ss_dssp             CSSSCTTEEECT-TSCEEEGGGTTSSSCCSS-----SSGGGSHH
T ss_pred             CccCCCCcEEcC-CCCEEChhhcCcCcccCC-----CCCcCCCC
Confidence            578999999998 899999999999999998     99999876

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=78.66  Aligned_cols=39  Identities=36%  Similarity=0.854  Sum_probs=31.5

Q ss_pred             ccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN  202 (482)
Q Consensus       163 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~~C~  202 (482)
                      .+|.+++|+|.++++||+.+|+|||+.||+|||||.+ |.
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~-C~   40 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS-CE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT-CC
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhcc-CC
Confidence            3577888888765588888888888888888888887 64

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.6e-10  Score=77.91  Aligned_cols=41  Identities=44%  Similarity=0.935  Sum_probs=38.4

Q ss_pred             cccccCCCCCCceeeecCCceEEecCCCeEECCCCCccccC
Q psy14262        416 ADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV  456 (482)
Q Consensus       416 i~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~di  456 (482)
                      ||||+.+++|+|+|+|++|+|+|.|++||+|.+++++|++|
T Consensus         1 idEC~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~ai   41 (41)
T d1i0ua2           1 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV   41 (41)
T ss_dssp             CCTTTTTTSCSSCEECSSSCCEECCCTTEEECTTTCCEEEC
T ss_pred             CccCCCCCCCCCEeECCCCCEEeECCCCCeECCCCCccccC
Confidence            68898778999999999999999999999999999999876

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-10  Score=77.77  Aligned_cols=37  Identities=41%  Similarity=0.922  Sum_probs=27.9

Q ss_pred             ccCCCCCeecCCC-CceecCCcccCCCCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCGSS-NQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       163 ~~C~~~~f~C~~~-~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      .+|.+++|+|..+ ++|||.+|+|||+.||.|||||.+
T Consensus         3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   40 (41)
T d1f5ya2           3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG   40 (41)
T ss_dssp             TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTT
T ss_pred             cccCCCceECCCCCCCCccchhcCCCcCcCcCcccccC
Confidence            4577788888542 468888888888888888888876

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.96  E-value=1.5e-10  Score=78.09  Aligned_cols=37  Identities=38%  Similarity=0.752  Sum_probs=33.4

Q ss_pred             cccCCCCeeeCC-CCCeecCccccCCCCCCCCCCCCCCCCccc
Q psy14262          3 HQCFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDEDW   44 (482)
Q Consensus         3 ~~C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~   44 (482)
                      |.|.++||+|.+ +++|||..|+|||+.||+     |+|||..
T Consensus         1 h~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~-----DgsDE~~   38 (42)
T d2gtlm2           1 HHCDEHESECRGDVPECIHDLLFCDGEKDCR-----DGSDEDP   38 (42)
T ss_dssp             CCCCTTEEECSSSSCCEEEGGGTTSSSCCSS-----SSTTTSH
T ss_pred             CCCCCCeeECCCCCCCEechhhcCCCCccCC-----CCCcCCc
Confidence            679999999973 479999999999999998     9999964

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.6e-10  Score=79.31  Aligned_cols=37  Identities=43%  Similarity=0.956  Sum_probs=34.3

Q ss_pred             cccCCCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         3 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      ..|.+++|+|. ||+|||..|+|||+.||+     |+|||..+
T Consensus         4 ~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~-----DgsDE~~~   40 (45)
T d1d2la_           4 PQCQPGEFACA-NSRCIQERWKCDGDNDCL-----DNSDEAPA   40 (45)
T ss_dssp             CBTTBTCEEET-TTEEECGGGTTTSSCTTT-----TCSTTSTT
T ss_pred             CcCCCCCeEcC-CCCeEChhhhCcCcCcCC-----CCCCCCcC
Confidence            57999999998 899999999999999998     99999854

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-10  Score=77.69  Aligned_cols=36  Identities=39%  Similarity=0.890  Sum_probs=32.2

Q ss_pred             cCCCCeeeCC-CCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          5 CFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         5 C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      |.++||+|.+ +.+|||..|+|||+.||+     |+|||.+|
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~-----DgsDE~~C   37 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCD-----SGEDEENC   37 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCST-----TSGGGSSC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCC-----CCchhccC
Confidence            7899999984 347999999999999998     99999876

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.6e-10  Score=77.91  Aligned_cols=37  Identities=32%  Similarity=0.880  Sum_probs=30.0

Q ss_pred             CccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        162 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       162 ~~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      ...|.+++|+|.++ +|||.+|+|||+.||.|||||.+
T Consensus         5 ~~~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   41 (44)
T d1f5ya1           5 GDRCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQ   41 (44)
T ss_dssp             CCCCCSSSEECSSS-CEECTTTTTSSSCSSSSSGGGTT
T ss_pred             CCccCCCCeEcCCC-CeEChhHcCCCcCcCCCCCcCCC
Confidence            34577788888876 78888888888888888888876

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2e-10  Score=75.28  Aligned_cols=35  Identities=51%  Similarity=1.084  Sum_probs=18.4

Q ss_pred             CCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCc
Q psy14262        205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNT  240 (482)
Q Consensus       205 C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C  240 (482)
                      |.+++|+|.+|+||+.+|+|||+.|| .||+||.+|
T Consensus         2 C~~~~f~C~~g~Ci~~~~~CDg~~DC-~dgsDE~~C   36 (37)
T d1ajja_           2 CSAFEFHCLSGECIHSSWRCDGGPDC-KDKSDEENC   36 (37)
T ss_dssp             CCTTCEECTTSCEECGGGTTSSSCCS-TTCGGGTTC
T ss_pred             CCCCceEcCCCCEECchhcCCCCCcC-CCCchhhcc
Confidence            44455555555555555555555555 555555444

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.93  E-value=2.5e-10  Score=76.57  Aligned_cols=36  Identities=33%  Similarity=0.707  Sum_probs=32.7

Q ss_pred             ccCCCCeeeCC-CCCeecCccccCCCCCCCCCCCCCCCCccc
Q psy14262          4 QCFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDEDW   44 (482)
Q Consensus         4 ~C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~   44 (482)
                      .|.++||+|.+ ++.|||..|+|||+.||+     |+|||..
T Consensus         1 ~C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~-----DgsDE~~   37 (41)
T d2gtln2           1 HCEKRTFQCGGNEQECISDLLVCDGHKDCH-----NAHDEDP   37 (41)
T ss_dssp             SSCTTEEECCSSSCCEEETTTTTSSSCCST-----TCTTSCG
T ss_pred             CCCCCeeECCCcCCCeechHHcCCCCccCC-----CCCcccc
Confidence            58999999963 689999999999999998     9999975

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.4e-10  Score=75.77  Aligned_cols=36  Identities=44%  Similarity=0.900  Sum_probs=21.0

Q ss_pred             CCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCc
Q psy14262        204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNT  240 (482)
Q Consensus       204 ~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C  240 (482)
                      +|++++|+|.+|+||+.+|+|||+.|| .|+|||.+|
T Consensus         2 sC~~~~f~C~~g~CI~~~~~CDg~~DC-~DgsDE~~C   37 (39)
T d1f8za_           2 TCRPDEFQCSDGNCIHGSRQCDREYDC-KDMSDEVGC   37 (39)
T ss_dssp             CCCTTEEECSSSCEEETTTSSSCCCCS-TTSGGGSSS
T ss_pred             CCCCCceEeCCCCeEChhhcCCCCCcC-CCCchhccC
Confidence            355555666555666666666666666 566666554

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-10  Score=76.67  Aligned_cols=37  Identities=46%  Similarity=1.086  Sum_probs=29.5

Q ss_pred             CCCCCeecCCC-CceecCCcccCCCCCCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGSS-NQCVALSKFCDGKPDCSNGEDEGPFCN  202 (482)
Q Consensus       165 C~~~~f~C~~~-~~Ci~~~~~CDg~~dC~dgsDE~~~C~  202 (482)
                      |.+++|+|.++ .+|||.+|+|||+.||+|||||.+ |.
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~-C~   38 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN-CG   38 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSS-CC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhcc-CC
Confidence            56788888764 468888888888888888888887 63

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.88  E-value=3.5e-10  Score=76.47  Aligned_cols=37  Identities=41%  Similarity=0.887  Sum_probs=32.9

Q ss_pred             ccCCCCeeeCC----CCCeecCccccCCCCCCCCCCCCCCCCcccc
Q psy14262          4 QCFNGQVQCAL----SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD   45 (482)
Q Consensus         4 ~C~~~~f~C~~----~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~~~   45 (482)
                      +|.++||+|.+    +++|||..|+|||+.||+     |+|||..|
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~-----DgsDE~~C   41 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDEWGC   41 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSS-----SSTTTGGG
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCc-----CChhhhcc
Confidence            58999999963    357999999999999998     99999876

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=6e-10  Score=75.83  Aligned_cols=35  Identities=31%  Similarity=0.683  Sum_probs=32.1

Q ss_pred             cccC-CCCeeeCCCCCeecCccccCCCCCCCCCCCCCCCCcc
Q psy14262          3 HQCF-NGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED   43 (482)
Q Consensus         3 ~~C~-~~~f~C~~~~~Ci~~~~~CDg~~dC~~~~~~d~sDE~   43 (482)
                      +.|. +++|+|. ||+|||..|+|||+.||+     |+|||.
T Consensus         4 ~~C~~~~~f~C~-~g~CI~~~~~CDg~~DC~-----DgsDE~   39 (44)
T d1xfea2           4 TLCEGPNKFKCH-SGECITLDKVCNMARDCR-----DWSDEP   39 (44)
T ss_dssp             SSCCSTTEEECT-TSCEEESTTTTCSSCCCS-----SCSSSC
T ss_pred             CcCCCCCeEECC-CCCeEchhhcCCCCCCCC-----CCCccC
Confidence            5674 7999998 899999999999999998     999996

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.83  E-value=2.5e-10  Score=76.68  Aligned_cols=37  Identities=46%  Similarity=1.020  Sum_probs=28.0

Q ss_pred             cCCCCCeecCC-CCceecCCcccCCCCCCCCCCCCCCCC
Q psy14262        164 LCHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDEGPFC  201 (482)
Q Consensus       164 ~C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~dgsDE~~~C  201 (482)
                      +|.+++|+|.+ .++||+.+|+|||+.||+|||||.+ |
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~-C   39 (41)
T d2gtlo2           2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD-C   39 (41)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC-C
T ss_pred             CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhcc-C
Confidence            57778888853 2378888888888888888888876 5

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.82  E-value=6.1e-10  Score=75.28  Aligned_cols=36  Identities=42%  Similarity=1.115  Sum_probs=25.7

Q ss_pred             CCCCCeecCCC----CceecCCcccCCCCCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGSS----NQCVALSKFCDGKPDCSNGEDEGPFC  201 (482)
Q Consensus       165 C~~~~f~C~~~----~~Ci~~~~~CDg~~dC~dgsDE~~~C  201 (482)
                      |.+.+|+|.+.    ++|||.+|+|||+.||+|||||.+ |
T Consensus         2 C~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~-C   41 (42)
T d1k7ba_           2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG-C   41 (42)
T ss_dssp             CSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG-G
T ss_pred             CCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhc-c
Confidence            56677777542    257777777777777777777776 5

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.5e-09  Score=74.25  Aligned_cols=36  Identities=39%  Similarity=0.918  Sum_probs=29.7

Q ss_pred             ccCCCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        163 VLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       163 ~~C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      ..|.+++|+|.++ +||+.+|+|||+.||.|||||.+
T Consensus         4 ~~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   39 (45)
T d1d2la_           4 PQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAP   39 (45)
T ss_dssp             CBTTBTCEEETTT-EEECGGGTTTSSCTTTTCSTTST
T ss_pred             CcCCCCCeEcCCC-CeEChhhhCcCcCcCCCCCCCCc
Confidence            4577788888776 78888888888888888888876

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.9e-10  Score=72.79  Aligned_cols=33  Identities=42%  Similarity=0.981  Sum_probs=16.7

Q ss_pred             CCCCCeecCCCCceecCCcccCCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEG  198 (482)
Q Consensus       165 C~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~  198 (482)
                      |.+++|+|.+| +||+..|+|||+.||.|||||.
T Consensus         3 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~   35 (39)
T d2fcwb2           3 CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEW   35 (39)
T ss_dssp             CCTTEEECTTS-CEEEGGGTTSSSCCSTTCGGGC
T ss_pred             cCCCceEcCCC-CeEChhhcCCCCCCCCCCCcCC
Confidence            44455555444 4555555555555555555554

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=3e-09  Score=73.03  Aligned_cols=41  Identities=39%  Similarity=0.814  Sum_probs=34.6

Q ss_pred             ccccc-CC---CCCCceeeecCCceEEecCCCeEECCCCCccccC
Q psy14262        416 ADECL-ID---GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV  456 (482)
Q Consensus       416 i~eC~-~~---~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~di  456 (482)
                      ||||+ .+   .+|+|.|+|++|+|+|+|++||+|..++++|.+|
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~i   45 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL   45 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCccccC
Confidence            57886 22   4589999999999999999999999999999865

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4e-09  Score=71.69  Aligned_cols=41  Identities=34%  Similarity=0.779  Sum_probs=36.4

Q ss_pred             cccccc-CCCCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        415 DADECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       415 di~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      ||+||+ ....|.+.|+|++|+|+|.|++||+|.+++++|.|
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~D   43 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD   43 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCcccC
Confidence            789998 44556889999999999999999999999999875

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.4e-09  Score=74.28  Aligned_cols=36  Identities=53%  Similarity=1.179  Sum_probs=22.0

Q ss_pred             CCCCCceecCCCCeeccCCCCCCCcCCCCCCCCCCCc
Q psy14262        204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNT  240 (482)
Q Consensus       204 ~C~~~~f~C~~g~Ci~~~~~CDg~~dC~~dgsDE~~C  240 (482)
                      .|++++|+|.+|.|||.+++|||+.|| .|+|||.+|
T Consensus         4 ~C~~~~f~C~~g~CI~~~~~CDg~~DC-~DgsDE~~c   39 (44)
T d1j8ea_           4 SCSSTQFKCNSGRCIPEHWTCDGDNDC-GDYSDETHA   39 (44)
T ss_dssp             SSCTTEEECTTSCEEEGGGTTSSSCCS-SSSGGGSHH
T ss_pred             cCCCCcEEcCCCCEEChhhcCcCcccC-CCCCcCCCC
Confidence            455566666666666666666666666 666666544

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=6.5e-09  Score=71.30  Aligned_cols=40  Identities=35%  Similarity=0.892  Sum_probs=35.0

Q ss_pred             ccccc-CC---CCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        416 ADECL-ID---GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       416 i~eC~-~~---~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      |+||+ ..   ..|+|.|+|++|+|+|.|++||+|..++++|.|
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            57886 22   268999999999999999999999999999976

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.69  E-value=3.3e-09  Score=71.42  Aligned_cols=35  Identities=40%  Similarity=0.987  Sum_probs=28.3

Q ss_pred             CCCCCeecCCC-CceecCCcccCCCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGSS-NQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       165 C~~~~f~C~~~-~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      |.+++|+|.++ ++|||.+|+|||+.||+|||||..
T Consensus         3 C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d2gtlm2           3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP   38 (42)
T ss_dssp             CCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred             CCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence            67788888753 479998899999999999998853

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=9.1e-09  Score=69.25  Aligned_cols=39  Identities=38%  Similarity=0.824  Sum_probs=34.8

Q ss_pred             cccc--CCCCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        417 DECL--IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       417 ~eC~--~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      +||+  ..+.|+|+|+|++|+|+|.|++||+|..++++|.+
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~~   41 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV   41 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeecC
Confidence            5776  34789999999999999999999999999999964

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.66  E-value=6.5e-09  Score=69.56  Aligned_cols=35  Identities=37%  Similarity=0.982  Sum_probs=29.0

Q ss_pred             CCCCCeecCC-CCceecCCcccCCCCCCCCCCCCCC
Q psy14262        165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       165 C~~~~f~C~~-~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      |.+++|+|.+ .++||+.+|+|||+.||+|||||..
T Consensus         2 C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            6788899964 3479999999999999999999975

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.1e-09  Score=70.12  Aligned_cols=33  Identities=36%  Similarity=0.815  Sum_probs=28.0

Q ss_pred             CCCCeecCCCCceecCCcccCCCCCCCCCCCCCC
Q psy14262        166 HPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP  199 (482)
Q Consensus       166 ~~~~f~C~~~~~Ci~~~~~CDg~~dC~dgsDE~~  199 (482)
                      .+.+|+|.++ +||+..|+|||+.||+|||||..
T Consensus         8 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           8 GPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             STTEEECTTS-CEEESTTTTCSSCCCSSCSSSCT
T ss_pred             CCCeEECCCC-CeEchhhcCCCCCCCCCCCccCc
Confidence            3688999887 79999999999999999999864

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.1e-08  Score=71.28  Aligned_cols=42  Identities=45%  Similarity=0.902  Sum_probs=34.7

Q ss_pred             ccccccc-CC--------CCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        414 VDADECL-ID--------GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       414 ~di~eC~-~~--------~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      .||+||. ..        ..|+|.|+|++|||+|.|++||+|..++++|++
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCceec
Confidence            3677775 21        235789999999999999999999999999974

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=9.2e-09  Score=69.78  Aligned_cols=41  Identities=41%  Similarity=0.909  Sum_probs=36.1

Q ss_pred             ccccccc-CCCCC-CceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        414 VDADECL-IDGSC-DQTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       414 ~di~eC~-~~~~C-s~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      +||+||+ .++.| .+.|+|++|+|+|.|++||+|..++++|.
T Consensus         1 qDinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2           1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD   43 (43)
T ss_dssp             EECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred             CCcccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCccC
Confidence            4799998 56777 47999999999999999999999999884

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.5e-08  Score=67.42  Aligned_cols=38  Identities=32%  Similarity=1.000  Sum_probs=34.2

Q ss_pred             ccccc-CCCCCCceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        416 ADECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       416 i~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      ++||+ .++.|+|+|+|++++|+|.|++||+|. ++++|+
T Consensus         2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~tC~   40 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE   40 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTEEC
T ss_pred             cccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCcCC
Confidence            68887 678999999999999999999999996 888884

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.4e-08  Score=68.50  Aligned_cols=40  Identities=40%  Similarity=0.760  Sum_probs=35.1

Q ss_pred             cccccc-CCCCCCc-eeeecCCceEEecCCCeEECCCCCccc
Q psy14262        415 DADECL-IDGSCDQ-TCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       415 di~eC~-~~~~Cs~-~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      ||+||. .++.|.+ .|+|++|||+|.|++||+|..++++|.
T Consensus         1 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~Cv   42 (42)
T d1lmja2           1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI   42 (42)
T ss_dssp             ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred             CccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCccC
Confidence            689998 6677855 999999999999999999999888873

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.9e-08  Score=68.09  Aligned_cols=42  Identities=43%  Similarity=0.777  Sum_probs=35.0

Q ss_pred             Ccccccccc-CCCCCCceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        412 QCVDADECL-IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       412 ~C~di~eC~-~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      +|.||+||+ ....+.++|+|++|+|.|.|++||+|.  +++|.|
T Consensus         1 sCvDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~--g~~C~D   43 (43)
T d1emoa1           1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA--GNECVD   43 (43)
T ss_dssp             CCCCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEES--SSCEEE
T ss_pred             CCcceeccCCcCCCCCCEeECCCCCeEeECCCCcccC--CCcccC
Confidence            488999998 444568899999999999999999984  667754

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=9.8e-09  Score=68.02  Aligned_cols=33  Identities=33%  Similarity=0.684  Sum_probs=30.3

Q ss_pred             ccccccCCCCCCceeeecCCceEEecCCCeEEC
Q psy14262        415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTLR  447 (482)
Q Consensus       415 di~eC~~~~~Cs~~C~n~~gsy~C~C~~Gy~l~  447 (482)
                      ||+||+..++|+|.|+|++|+|+|.|++||+|.
T Consensus         1 DidEC~~~~~C~~~C~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3           1 DIDECENGGFCSGVCHNLPGTFECICGPDSALA   33 (40)
T ss_dssp             ECCHHHHCSSCSSEEEECSSSEEEEECSSSSCE
T ss_pred             CccccCCCcCccCEeeCCCCCeEeECCCCCeeC
Confidence            588998668899999999999999999999985

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.40  E-value=7.6e-08  Score=67.57  Aligned_cols=39  Identities=38%  Similarity=0.777  Sum_probs=36.5

Q ss_pred             CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCCC
Q psy14262        421 IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVP  459 (482)
Q Consensus       421 ~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~didec  459 (482)
                      .++.|+|+|++++++|+|.|++||+|..|+++|.+++++
T Consensus         4 ~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_           4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence            468899999999999999999999999999999999865

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-07  Score=66.33  Aligned_cols=38  Identities=29%  Similarity=0.544  Sum_probs=35.5

Q ss_pred             CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCC
Q psy14262        421 IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV  458 (482)
Q Consensus       421 ~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~dide  458 (482)
                      .++.|+|+|++++++|+|+|++||+|..|+++|+++++
T Consensus         5 ~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~   42 (50)
T d1autl2           5 DNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK   42 (50)
T ss_dssp             GGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred             CCCCcccEeecCCCCeEEECCCCCEECCCCCccccCCC
Confidence            45889999999999999999999999999999998884

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.9e-07  Score=63.22  Aligned_cols=39  Identities=38%  Similarity=0.775  Sum_probs=33.0

Q ss_pred             cccccc-CCCCCCc-eeeecCCceEEecCCCeEEC-CCCCcc
Q psy14262        415 DADECL-IDGSCDQ-TCTNTHLSYVCSCTEGYTLR-PDGKSC  453 (482)
Q Consensus       415 di~eC~-~~~~Cs~-~C~n~~gsy~C~C~~Gy~l~-~d~~tC  453 (482)
                      ||+||+ .+..|.+ .|+|++|||+|.|++||++. .++++|
T Consensus         2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~C   43 (44)
T d1lmja1           2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC   43 (44)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSE
T ss_pred             cccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcC
Confidence            789998 5667765 89999999999999999986 467766

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.7e-07  Score=65.73  Aligned_cols=38  Identities=45%  Similarity=0.926  Sum_probs=35.5

Q ss_pred             CCCCCCceeeecCCceEEecCCCeEECCCCCccccCCC
Q psy14262        421 IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV  458 (482)
Q Consensus       421 ~~~~Cs~~C~n~~gsy~C~C~~Gy~l~~d~~tC~dide  458 (482)
                      .++.|+|+|+|++++|+|.|++||+|..|+++|.++++
T Consensus         6 ~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~   43 (51)
T d2p3ua1           6 DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP   43 (51)
T ss_dssp             GGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred             CCCCcccEeecCCCCeEeEcCCCCEECCCCCccccCCc
Confidence            45889999999999999999999999999999999884

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1e-06  Score=63.00  Aligned_cols=38  Identities=45%  Similarity=0.864  Sum_probs=34.5

Q ss_pred             CCCCCCceeeecCC-ceEEecCCCeEECCCCCccccCCC
Q psy14262        421 IDGSCDQTCTNTHL-SYVCSCTEGYTLRPDGKSCTAVNV  458 (482)
Q Consensus       421 ~~~~Cs~~C~n~~g-sy~C~C~~Gy~l~~d~~tC~dide  458 (482)
                      .++.|+|+|+++++ +|+|.|+.||+|..|+++|.++++
T Consensus         6 ~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~   44 (57)
T d1rfnb_           6 KNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP   44 (57)
T ss_dssp             GGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEECSS
T ss_pred             CCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccCCC
Confidence            46889999999975 899999999999999999999885

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.5e-06  Score=57.86  Aligned_cols=36  Identities=28%  Similarity=0.724  Sum_probs=31.4

Q ss_pred             Ccc-CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccc
Q psy14262        381 DCE-NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDA  416 (482)
Q Consensus       381 ~C~-~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di  416 (482)
                      ||. +++|++.|.|++++|+|.|++||  .+++++|++|
T Consensus         3 EC~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~ai   41 (41)
T d1i0ua2           3 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV   41 (41)
T ss_dssp             TTTTTTSCSSCEECSSSCCEECCCTTEEECTTTCCEEEC
T ss_pred             cCCCCCCCCCEeECCCCCEEeECCCCCeECCCCCccccC
Confidence            776 67899999999999999999999  6788888754

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.8e-06  Score=60.06  Aligned_cols=38  Identities=26%  Similarity=0.707  Sum_probs=32.6

Q ss_pred             cccc-CCCCCCceeee------cCCceEEecCCCeEECCCCCccc
Q psy14262        417 DECL-IDGSCDQTCTN------THLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       417 ~eC~-~~~~Cs~~C~n------~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      +||. .++.|+|+|+.      +.++|+|.|+.||+|..|+++|.
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL   49 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence            5666 56899999974      45799999999999999999985

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7e-06  Score=57.62  Aligned_cols=37  Identities=41%  Similarity=0.873  Sum_probs=33.2

Q ss_pred             CCCCCCceeeecCC-ceEEecCCCeEECCCCCccccCC
Q psy14262        421 IDGSCDQTCTNTHL-SYVCSCTEGYTLRPDGKSCTAVN  457 (482)
Q Consensus       421 ~~~~Cs~~C~n~~g-sy~C~C~~Gy~l~~d~~tC~did  457 (482)
                      .++.|+|+|+++++ +|+|.|+.||+|..|+++|..+.
T Consensus         5 ~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~   42 (53)
T d2bz6l1           5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV   42 (53)
T ss_dssp             GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCCC
Confidence            35889999999987 58999999999999999998765

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=3.2e-05  Score=51.50  Aligned_cols=37  Identities=43%  Similarity=0.939  Sum_probs=30.9

Q ss_pred             ccccccc-CCCCCC--ceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        414 VDADECL-IDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       414 ~di~eC~-~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      ++|+||+ ...+|.  ..|+|++++|+|.|++||+    |++|+
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~----G~~Ce   40 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCE   40 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE----STTSC
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCc----CCCCc
Confidence            4789998 467894  5999999999999999998    66664

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=1.3e-05  Score=54.42  Aligned_cols=31  Identities=32%  Similarity=0.739  Sum_probs=26.8

Q ss_pred             CCCcCCCCCCCCCccccCCCCc--cCCCCCccc
Q psy14262        385 LKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVD  415 (482)
Q Consensus       385 ~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~d  415 (482)
                      .+|++.|+|++++|+|.|++||  ..++++|..
T Consensus        12 ~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~   44 (45)
T d1nt0a3          12 VPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSA   44 (45)
T ss_dssp             -CCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCEeecCCCCEEEeCCCCCEECCCCCcccc
Confidence            3588999999999999999999  678888864

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=1.5e-05  Score=53.12  Aligned_cols=34  Identities=29%  Similarity=0.799  Sum_probs=29.5

Q ss_pred             Ccc---CCCCcCCCCCCCCCccccCCCCc--cCCCCCcc
Q psy14262        381 DCE---NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCV  414 (482)
Q Consensus       381 ~C~---~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~  414 (482)
                      ||.   +++|++.|+|++++|+|.|++||  ..++++|.
T Consensus         2 EC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2           2 ECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG   40 (42)
T ss_dssp             TTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             CCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeec
Confidence            665   46899999999999999999999  67888884

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=1e-05  Score=53.38  Aligned_cols=33  Identities=36%  Similarity=0.838  Sum_probs=28.1

Q ss_pred             Ccc--CCCCcCCCCCCCCCccccCCCCc-cCCCCCc
Q psy14262        381 DCE--NLKCSHKCSPTPRGAMCFCPAGQ-NPNKTQC  413 (482)
Q Consensus       381 ~C~--~~~C~~~C~~~~~~~~C~C~~G~-~~~~~~C  413 (482)
                      ||.  +++|+|.|++++++|+|.|++|| +.++++|
T Consensus         4 eC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~d~~tC   39 (40)
T d3bpse1           4 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC   39 (40)
T ss_dssp             GGGTGGGGCSSEEEECSSSEEEECCTTCCEETTTEE
T ss_pred             cCCCCCCCCcCEEEcCCCCEEEECCCCCEECCCCcC
Confidence            676  67899999999999999999999 4466666

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=1.7e-05  Score=53.72  Aligned_cols=30  Identities=37%  Similarity=0.850  Sum_probs=27.0

Q ss_pred             CCcCCCCCCCCCccccCCCCc--cCCCCCccc
Q psy14262        386 KCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVD  415 (482)
Q Consensus       386 ~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~d  415 (482)
                      +|++.|+|++++|+|.|++||  ..++++|.+
T Consensus        13 ~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2          13 TCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             SSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            688999999999999999999  678888865

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.4e-05  Score=50.62  Aligned_cols=36  Identities=28%  Similarity=0.594  Sum_probs=27.4

Q ss_pred             CCcc--CCCCcCCCCCCCCCccccCCCCccCCCCCccc
Q psy14262        380 ADCE--NLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVD  415 (482)
Q Consensus       380 ~~C~--~~~C~~~C~~~~~~~~C~C~~G~~~~~~~C~d  415 (482)
                      +||.  +..+.++|+|++|+|.|.|++||..++++|+|
T Consensus         6 dEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C~D   43 (43)
T d1emoa1           6 DECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVD   43 (43)
T ss_dssp             CSSSSTTSCSSSCCCCCSSCCCCCCCTTEEESSSCEEE
T ss_pred             eccCCcCCCCCCEeECCCCCeEeECCCCcccCCCcccC
Confidence            3776  33456699999999999999999445666753

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=2.4e-05  Score=52.47  Aligned_cols=35  Identities=37%  Similarity=0.807  Sum_probs=28.3

Q ss_pred             Ccc--CCCCcCCCCCCCCCccccCCCCc--cCCCCCccc
Q psy14262        381 DCE--NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVD  415 (482)
Q Consensus       381 ~C~--~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~d  415 (482)
                      ||+  +..|.++|+|++++|+|.|++||  .++++.|.|
T Consensus         5 EC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~D   43 (43)
T d1uzka1           5 ECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD   43 (43)
T ss_dssp             GGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred             ccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCcccC
Confidence            776  44567799999999999999999  566777753

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.13  E-value=8.3e-05  Score=51.59  Aligned_cols=37  Identities=22%  Similarity=0.526  Sum_probs=33.1

Q ss_pred             CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccccccc
Q psy14262        384 NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADECL  420 (482)
Q Consensus       384 ~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~eC~  420 (482)
                      +++|+|.|++++++|+|.|++||  .+++++|..++++.
T Consensus         5 NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~p   43 (51)
T d1kigl_           5 NGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP   43 (51)
T ss_dssp             TTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSSC
T ss_pred             CCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCccC
Confidence            57899999999999999999999  77899999888763

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=2.4e-05  Score=51.31  Aligned_cols=26  Identities=31%  Similarity=0.698  Sum_probs=24.2

Q ss_pred             Ccc-CCCCcCCCCCCCCCccccCCCCc
Q psy14262        381 DCE-NLKCSHKCSPTPRGAMCFCPAGQ  406 (482)
Q Consensus       381 ~C~-~~~C~~~C~~~~~~~~C~C~~G~  406 (482)
                      ||. +++|++.|+|++++|+|.|++||
T Consensus         4 EC~~~~~C~~~C~N~~Gsy~C~C~~Gy   30 (40)
T d1dx5i3           4 ECENGGFCSGVCHNLPGTFECICGPDS   30 (40)
T ss_dssp             HHHHCSSCSSEEEECSSSEEEEECSSS
T ss_pred             ccCCCcCccCEeeCCCCCeEeECCCCC
Confidence            777 67899999999999999999999

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0001  Score=50.85  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=31.4

Q ss_pred             CCCCcCCCCCCCCCccccCCCCc--cCCCCCcccccc
Q psy14262        384 NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADE  418 (482)
Q Consensus       384 ~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~e  418 (482)
                      +++|+|.|++++++|+|.|+.||  ..++++|..+.+
T Consensus         6 NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~   42 (50)
T d1autl2           6 NGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK   42 (50)
T ss_dssp             GGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred             CCCcccEeecCCCCeEEECCCCCEECCCCCccccCCC
Confidence            57899999999999999999999  778999987665

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=7.8e-05  Score=49.55  Aligned_cols=33  Identities=36%  Similarity=0.917  Sum_probs=26.1

Q ss_pred             Ccc--CCCCcC-CCCCCCCCccccCCCCc--cCCCCCc
Q psy14262        381 DCE--NLKCSH-KCSPTPRGAMCFCPAGQ--NPNKTQC  413 (482)
Q Consensus       381 ~C~--~~~C~~-~C~~~~~~~~C~C~~G~--~~~~~~C  413 (482)
                      ||.  ...|.+ +|+|++++|+|.|++||  .+++++|
T Consensus         4 EC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~C   41 (42)
T d1lmja2           4 ECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC   41 (42)
T ss_dssp             HHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred             ccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCcc
Confidence            676  456766 89999999999999999  4555555

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=9.1e-05  Score=49.48  Aligned_cols=33  Identities=33%  Similarity=0.746  Sum_probs=25.8

Q ss_pred             Ccc--CCCCc-CCCCCCCCCccccCCCCc--cCCCCCc
Q psy14262        381 DCE--NLKCS-HKCSPTPRGAMCFCPAGQ--NPNKTQC  413 (482)
Q Consensus       381 ~C~--~~~C~-~~C~~~~~~~~C~C~~G~--~~~~~~C  413 (482)
                      ||.  ...|. ++|+|++|+|+|.|++||  ..++++|
T Consensus         5 EC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~C   42 (43)
T d1uzka2           5 ECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC   42 (43)
T ss_dssp             HHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBB
T ss_pred             cccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCcc
Confidence            675  44564 589999999999999999  4556665

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00012  Score=50.82  Aligned_cols=36  Identities=22%  Similarity=0.581  Sum_probs=31.7

Q ss_pred             CCCCcCCCCCCCCCccccCCCCc--cCCCCCccccccc
Q psy14262        384 NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADEC  419 (482)
Q Consensus       384 ~~~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~di~eC  419 (482)
                      +++|+|.|++++++|+|.|++||  .+++++|..+.+.
T Consensus         7 NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~~   44 (51)
T d2p3ua1           7 NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY   44 (51)
T ss_dssp             GGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSS
T ss_pred             CCCcccEeecCCCCeEeEcCCCCEECCCCCccccCCcc
Confidence            57899999999999999999999  6789999876653

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00027  Score=47.25  Aligned_cols=33  Identities=27%  Similarity=0.679  Sum_probs=25.3

Q ss_pred             Ccc--CCCCcC-CCCCCCCCccccCCCCc-c--CCCCCc
Q psy14262        381 DCE--NLKCSH-KCSPTPRGAMCFCPAGQ-N--PNKTQC  413 (482)
Q Consensus       381 ~C~--~~~C~~-~C~~~~~~~~C~C~~G~-~--~~~~~C  413 (482)
                      ||.  ...|.+ +|+|++|+|+|.|++|| .  .+++.|
T Consensus         5 EC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~C   43 (44)
T d1lmja1           5 ECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC   43 (44)
T ss_dssp             TTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSE
T ss_pred             ccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcC
Confidence            676  445665 89999999999999999 2  345555

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.59  E-value=0.0009  Score=42.89  Aligned_cols=34  Identities=32%  Similarity=1.029  Sum_probs=27.2

Q ss_pred             ccccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCcc
Q psy14262        415 DADECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       415 di~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      |+++|. ..+|.  ..|++..++|.|.|++||+    |+.|
T Consensus         1 D~d~C~-~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~C   36 (37)
T d2c4fl1           1 DGDQCA-SSPCQNGGSCKDQLQSYICFCLPAFE----GRNC   36 (37)
T ss_dssp             TCCGGG-GCCCCTTCEEEEETTEEEEECCTTEE----STTS
T ss_pred             CcccCC-CCCCCCCCEEECCCCCeEEECCCCCc----CCCC
Confidence            467786 56783  5899999999999999997    5555

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0014  Score=42.42  Aligned_cols=34  Identities=32%  Similarity=0.934  Sum_probs=26.2

Q ss_pred             cccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        416 ADECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       416 i~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      |++|. ..+|.  ..|++..++|+|.|++||.    |+.|+
T Consensus         1 Id~C~-~~PC~n~g~C~~~~~~y~C~C~~G~~----G~~Ce   36 (39)
T d2vj3a2           1 VNECV-SNPCQNDATCLDQIGEFQCICMPGYE----GVHCE   36 (39)
T ss_dssp             CCTTT-TCCCCSSCEEEECSSCEEEECCTTEE----SSSSC
T ss_pred             CcCCc-CCCCCCCCEEECCCCCEEEeCCCCCc----cCcCe
Confidence            56776 46773  4899999999999999997    66664

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0011  Score=42.93  Aligned_cols=34  Identities=38%  Similarity=0.940  Sum_probs=26.9

Q ss_pred             ccccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCcc
Q psy14262        415 DADECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSC  453 (482)
Q Consensus       415 di~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC  453 (482)
                      ++++|. ..+|.  ..|++..++|+|.|++||.    |+.|
T Consensus         2 d~d~C~-~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~C   37 (39)
T d1edmb_           2 DGDQCE-SNPCLNGGSCKDDINSYECWCPFGFE----GKNC   37 (39)
T ss_dssp             CCCTTT-TCCCCTTCEEEEETTEEEEECCTTCC----STTS
T ss_pred             ccccCC-CCCCCCCcEEEcCCCCEEEECCCCCC----CCCC
Confidence            567786 56783  5899999999999999986    6666

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00025  Score=49.51  Aligned_cols=29  Identities=28%  Similarity=0.785  Sum_probs=25.1

Q ss_pred             CCcCCCCCCCCCccccCCCCc--cCCCCCcc
Q psy14262        386 KCSHKCSPTPRGAMCFCPAGQ--NPNKTQCV  414 (482)
Q Consensus       386 ~C~~~C~~~~~~~~C~C~~G~--~~~~~~C~  414 (482)
                      .|++.|+|++|+|+|.|++||  ..++++|+
T Consensus        21 ~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_          21 QCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             TTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             CccCEeEcCCCCeEeECCCCCeECCCCCcee
Confidence            467899999999999999999  56777775

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.00077  Score=43.76  Aligned_cols=32  Identities=22%  Similarity=0.636  Sum_probs=27.0

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      +|.+.||++  +|++..++|+|.|++||  .+..|+
T Consensus         3 ~C~~~PC~n~g~C~~~~~~y~C~C~~G~--~G~~Ce   36 (39)
T d2vj3a2           3 ECVSNPCQNDATCLDQIGEFQCICMPGY--EGVHCE   36 (39)
T ss_dssp             TTTTCCCCSSCEEEECSSCEEEECCTTE--ESSSSC
T ss_pred             CCcCCCCCCCCEEECCCCCEEEeCCCCC--ccCcCe
Confidence            777778876  89999999999999999  666674

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0012  Score=42.78  Aligned_cols=31  Identities=29%  Similarity=0.725  Sum_probs=19.0

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C  413 (482)
                      +|.++||++  +|++..++|+|.|++||  .+..|
T Consensus         2 ~C~~~PC~ngg~C~~~~~~y~C~C~~G~--~G~~C   34 (39)
T d1xkba1           2 QCETSPCQNQGKCKDGLGEYTCTCLEGF--EGKNC   34 (39)
T ss_dssp             TTTTCCCCSSCEECCCSSSCCEECCTTE--ETTTT
T ss_pred             cCCCCCCCCCcEEECCCCCEEEECCCCC--CcCcC
Confidence            455555554  66666666777777776  44555

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0008  Score=44.43  Aligned_cols=32  Identities=31%  Similarity=0.718  Sum_probs=25.9

Q ss_pred             Ccc--CCCCcC--CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        381 DCE--NLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       381 ~C~--~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      ||.  +++|.+  +|+++.++|+|.|++||  .+.+|+
T Consensus         5 eC~~~~~pC~n~g~C~n~~g~y~C~C~~G~--~G~~Ce   40 (42)
T d2vj3a1           5 ECSLGANPCEHAGKCINTLGSFECQCLQGY--TGPRCE   40 (42)
T ss_dssp             TTTSSSCSSSTTCEEEECSSSEEEECCTTE--ESTTSC
T ss_pred             cccCCCCCCCCCcEeECCCCCEEeECCCCC--cCCCCc
Confidence            565  567765  89999999999999999  566664

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0012  Score=45.19  Aligned_cols=34  Identities=26%  Similarity=0.623  Sum_probs=27.4

Q ss_pred             Ccc--CCCCcCCCC------CCCCCccccCCCCc--cCCCCCcc
Q psy14262        381 DCE--NLKCSHKCS------PTPRGAMCFCPAGQ--NPNKTQCV  414 (482)
Q Consensus       381 ~C~--~~~C~~~C~------~~~~~~~C~C~~G~--~~~~~~C~  414 (482)
                      +|.  +++|+|.|+      +..++|+|.|+.||  .+++++|.
T Consensus         6 eC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2           6 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL   49 (50)
T ss_dssp             SSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             ccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence            555  688999996      45579999999999  67788874

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0014  Score=46.12  Aligned_cols=36  Identities=25%  Similarity=0.571  Sum_probs=30.8

Q ss_pred             CCCCcCCCCCCCC-CccccCCCCc--cCCCCCccccccc
Q psy14262        384 NLKCSHKCSPTPR-GAMCFCPAGQ--NPNKTQCVDADEC  419 (482)
Q Consensus       384 ~~~C~~~C~~~~~-~~~C~C~~G~--~~~~~~C~di~eC  419 (482)
                      +++|+|.|+++++ +|+|.|+.||  .+++++|..+.+.
T Consensus         7 NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~f   45 (57)
T d1rfnb_           7 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF   45 (57)
T ss_dssp             GGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEECSSS
T ss_pred             CCCcccEeeeCCCCCeEeECCCCCEECCCCCccccCCCc
Confidence            6789999999875 7999999999  6789999877654

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.0016  Score=42.35  Aligned_cols=27  Identities=30%  Similarity=0.856  Sum_probs=23.0

Q ss_pred             ceeeecCCceEEecCCCeEECCCCCcccc
Q psy14262        427 QTCTNTHLSYVCSCTEGYTLRPDGKSCTA  455 (482)
Q Consensus       427 ~~C~n~~gsy~C~C~~Gy~l~~d~~tC~d  455 (482)
                      ..|+|++|+|.|.|.+||.-  ++++|.+
T Consensus        13 A~C~Nt~Gsy~C~C~~Gy~G--dG~~C~~   39 (40)
T d1gl4a2          13 AECRDYATGFCCRCVANYTG--NGRQCVA   39 (40)
T ss_dssp             EEEEECSSCEEEEECTTEEE--CSSSEEE
T ss_pred             CEeecCCCCeEeECCCCCcC--CCCEeeC
Confidence            58999999999999999984  4777753

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0011  Score=43.05  Aligned_cols=32  Identities=28%  Similarity=0.780  Sum_probs=26.7

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      +|.++||.+  +|++..++|+|.|++||  .++.|+
T Consensus         5 ~C~~~PC~ngg~C~~~~~~y~C~C~~g~--~G~~Ce   38 (39)
T d1edmb_           5 QCESNPCLNGGSCKDDINSYECWCPFGF--EGKNCE   38 (39)
T ss_dssp             TTTTCCCCTTCEEEEETTEEEEECCTTC--CSTTSC
T ss_pred             cCCCCCCCCCcEEEcCCCCEEEECCCCC--CCCCCC
Confidence            677778876  89999999999999999  666664

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0013  Score=41.56  Aligned_cols=24  Identities=25%  Similarity=0.779  Sum_probs=15.1

Q ss_pred             CCCCC--ceeeecCCceEEecCCCeE
Q psy14262        422 DGSCD--QTCTNTHLSYVCSCTEGYT  445 (482)
Q Consensus       422 ~~~Cs--~~C~n~~gsy~C~C~~Gy~  445 (482)
                      ..+|.  .+|++..++|+|.|++||.
T Consensus         5 ~~PC~ngg~C~~~~~~y~C~C~~g~~   30 (35)
T d2vj3a3           5 SSPCLHNGRCLDKINEFQCECPTGFT   30 (35)
T ss_dssp             TCCSTTTCEEEECSSCEEEECCTTEE
T ss_pred             CCCCCCCcEEECCCCCeEEECCCCCC
Confidence            34552  4666666677777777766

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0082  Score=37.69  Aligned_cols=33  Identities=27%  Similarity=0.721  Sum_probs=28.8

Q ss_pred             CCccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        380 ADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       380 ~~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      ++|.++||.+  +|++...+|+|.|++||  .++.|+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~--~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGF--TGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTE--ESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCC--CCCCcC
Confidence            3789999987  89999999999999999  787763

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.34  E-value=0.0011  Score=42.38  Aligned_cols=31  Identities=23%  Similarity=0.775  Sum_probs=25.5

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C  413 (482)
                      +|.++||.+  +|++..++|+|.|++||  .+..|
T Consensus         4 ~C~~~PC~ngg~C~~~~~~y~C~C~~g~--~G~~C   36 (37)
T d2c4fl1           4 QCASSPCQNGGSCKDQLQSYICFCLPAF--EGRNC   36 (37)
T ss_dssp             GGGGCCCCTTCEEEEETTEEEEECCTTE--ESTTS
T ss_pred             cCCCCCCCCCCEEECCCCCeEEECCCCC--cCCCC
Confidence            677777875  89998999999999999  55555

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0037  Score=42.27  Aligned_cols=31  Identities=29%  Similarity=0.678  Sum_probs=18.0

Q ss_pred             CccCCCCcC-CCCCCCCCccccCCCCccCCCCCc
Q psy14262        381 DCENLKCSH-KCSPTPRGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       381 ~C~~~~C~~-~C~~~~~~~~C~C~~G~~~~~~~C  413 (482)
                      +|.+++|.+ +|.+..++|+|.|++||  .++.|
T Consensus        10 ~C~~~PC~nG~C~~~~~~y~C~C~~G~--~G~~C   41 (48)
T d1autl1          10 PCASLCCGHGTCIDGIGSFSCDCRSGW--EGRFC   41 (48)
T ss_dssp             SSSSTTTTSEEECCCSSCCCEEECTTE--ESTTS
T ss_pred             cccCCCCCCCEEECCCCCCeEeCCCCC--cCCCc
Confidence            444555554 56666666666666666  44445

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0085  Score=37.08  Aligned_cols=31  Identities=35%  Similarity=0.920  Sum_probs=25.7

Q ss_pred             ccccCCCCC-CceeeecCCceEEecCCCeEEC
Q psy14262        417 DECLIDGSC-DQTCTNTHLSYVCSCTEGYTLR  447 (482)
Q Consensus       417 ~eC~~~~~C-s~~C~n~~gsy~C~C~~Gy~l~  447 (482)
                      +||+...+| ...|.|..|+|.|.|..||...
T Consensus         2 dECsignpCGnGTCtNviGgFec~C~~GFepg   33 (39)
T d1emoa2           2 DECSVGNPCGNGTCKNVIGGFECTCEEGFEPG   33 (39)
T ss_dssp             CGGGTTCSSSSSCEEECSSSEEECCSSSSCCC
T ss_pred             CccccCCccCCceeeecccceEEeecCCcCCC
Confidence            577755778 5799999999999999999754

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0023  Score=41.63  Aligned_cols=26  Identities=38%  Similarity=0.846  Sum_probs=16.5

Q ss_pred             ceeeecCCceEEecCCCeEECCCCCccccC
Q psy14262        427 QTCTNTHLSYVCSCTEGYTLRPDGKSCTAV  456 (482)
Q Consensus       427 ~~C~n~~gsy~C~C~~Gy~l~~d~~tC~di  456 (482)
                      ..|++..++|+|.|++||.    |+.|+.+
T Consensus        13 g~C~~~~~~y~C~C~~g~~----G~~Ce~~   38 (40)
T d1g1sa2          13 GECLETIGNYTCSCYPGFY----GPECEYV   38 (40)
T ss_dssp             EEEEECSSSEEEEECTTEE----STTSCEE
T ss_pred             cEEECCCCCeEEeCCCCcc----CCCCCCC
Confidence            3666666677777777775    5556543

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.01  Score=38.25  Aligned_cols=33  Identities=36%  Similarity=1.032  Sum_probs=26.5

Q ss_pred             ccccCCCCCC--ceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        417 DECLIDGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       417 ~eC~~~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      |+|. ..+|.  ..|++..++|.|.|++||.    |+.|+
T Consensus         1 D~C~-~~PC~ngg~C~~~~~~y~C~C~~G~~----G~~Ce   35 (39)
T d1xkba1           1 DQCE-TSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCE   35 (39)
T ss_dssp             CTTT-TCCCCSSCEECCCSSSCCEECCTTEE----TTTTC
T ss_pred             CcCC-CCCCCCCcEEECCCCCEEEECCCCCC----cCcCe
Confidence            3555 46774  5899999999999999998    77774

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0034  Score=43.45  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=28.4

Q ss_pred             CCCCcCCCCCCCC-CccccCCCCc--cCCCCCccccc
Q psy14262        384 NLKCSHKCSPTPR-GAMCFCPAGQ--NPNKTQCVDAD  417 (482)
Q Consensus       384 ~~~C~~~C~~~~~-~~~C~C~~G~--~~~~~~C~di~  417 (482)
                      +++|+|.|+++++ .|+|.|+.||  .+++++|....
T Consensus         6 NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~   42 (53)
T d2bz6l1           6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV   42 (53)
T ss_dssp             GGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCCC
Confidence            5789999998887 5889999999  77889997543

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.022  Score=36.76  Aligned_cols=35  Identities=26%  Similarity=0.638  Sum_probs=30.7

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCccccc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDAD  417 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~di~  417 (482)
                      .|.+++|.+  +|++..++|+|.|++||  .+..|+.+.
T Consensus         3 ~C~~~pC~ngg~C~~~~~~y~C~C~~g~--~G~~Ce~~~   39 (40)
T d1g1sa2           3 SCQDMSCSKQGECLETIGNYTCSCYPGF--YGPECEYVR   39 (40)
T ss_dssp             CCCTTGGGGSEEEEECSSSEEEEECTTE--ESTTSCEEC
T ss_pred             cccCCcCCCCcEEECCCCCeEEeCCCCc--cCCCCCCCc
Confidence            688899986  89999999999999999  898887653

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.0035  Score=40.48  Aligned_cols=29  Identities=34%  Similarity=0.969  Sum_probs=20.1

Q ss_pred             CCCCC--ceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        422 DGSCD--QTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       422 ~~~Cs--~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      ..+|.  ..|++..++|+|.|++||.    |+.|+
T Consensus         6 ~~pC~ngg~C~~~~~~~~C~C~~g~~----G~~Ce   36 (39)
T d1g1ta2           6 NTSCSGHGECVETINNYTCKCDPGFS----GLKCE   36 (39)
T ss_dssp             TTGGGGSEEEEEETTEEEEEECTTEE----STTSC
T ss_pred             CCcCCCCcEEECCCCCEEEeCCCCCc----CcCcC
Confidence            34562  4777777888888888886    66664

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.018  Score=38.72  Aligned_cols=34  Identities=29%  Similarity=0.819  Sum_probs=27.2

Q ss_pred             cccccCCCCC-CceeeecCCceEEecCCCeEECCCCCccc
Q psy14262        416 ADECLIDGSC-DQTCTNTHLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       416 i~eC~~~~~C-s~~C~n~~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      .++|. ..+| ..+|++..++|+|.|++||.    |+.|.
T Consensus         8 ~~~C~-~~PC~nG~C~~~~~~y~C~C~~G~~----G~~Ce   42 (48)
T d1autl1           8 EHPCA-SLCCGHGTCIDGIGSFSCDCRSGWE----GRFCQ   42 (48)
T ss_dssp             CCSSS-STTTTSEEECCCSSCCCEEECTTEE----STTSC
T ss_pred             CCccc-CCCCCCCEEECCCCCCeEeCCCCCc----CCCcc
Confidence            35565 4667 35899999999999999998    78885

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.45  E-value=0.0055  Score=39.73  Aligned_cols=25  Identities=36%  Similarity=0.687  Sum_probs=21.8

Q ss_pred             CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        390 KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       390 ~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      .|+|++++|.|.|++||..++..|.
T Consensus        14 ~C~Nt~Gsy~C~C~~Gy~GdG~~C~   38 (40)
T d1gl4a2          14 ECRDYATGFCCRCVANYTGNGRQCV   38 (40)
T ss_dssp             EEEECSSCEEEEECTTEEECSSSEE
T ss_pred             EeecCCCCeEeECCCCCcCCCCEee
Confidence            7999999999999999966777774

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.028  Score=36.05  Aligned_cols=32  Identities=31%  Similarity=0.707  Sum_probs=27.9

Q ss_pred             CccCCCCcC--CCCCCCCCccccCCCCccCCCCCcc
Q psy14262        381 DCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCV  414 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~~~~~~C~C~~G~~~~~~~C~  414 (482)
                      .|.+++|.+  +|++..++|+|.|++||  .+..|+
T Consensus         3 ~C~~~pC~ngg~C~~~~~~~~C~C~~g~--~G~~Ce   36 (39)
T d1g1ta2           3 ACTNTSCSGHGECVETINNYTCKCDPGF--SGLKCE   36 (39)
T ss_dssp             CCCTTGGGGSEEEEEETTEEEEEECTTE--ESTTSC
T ss_pred             cccCCcCCCCcEEECCCCCEEEeCCCCC--cCcCcC
Confidence            688899986  89999999999999999  777763

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.053  Score=33.43  Aligned_cols=26  Identities=27%  Similarity=0.745  Sum_probs=22.0

Q ss_pred             Ccc-CCCCcC-CCCCCCCCccccCCCCc
Q psy14262        381 DCE-NLKCSH-KCSPTPRGAMCFCPAGQ  406 (482)
Q Consensus       381 ~C~-~~~C~~-~C~~~~~~~~C~C~~G~  406 (482)
                      ||+ .++|.+ +|.|..++|.|.|..||
T Consensus         3 ECsignpCGnGTCtNviGgFec~C~~GF   30 (39)
T d1emoa2           3 ECSVGNPCGNGTCKNVIGGFECTCEEGF   30 (39)
T ss_dssp             GGGTTCSSSSSCEEECSSSEEECCSSSS
T ss_pred             ccccCCccCCceeeecccceEEeecCCc
Confidence            555 567766 89999999999999999

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.038  Score=35.79  Aligned_cols=16  Identities=31%  Similarity=0.866  Sum_probs=9.8

Q ss_pred             CCccccCCCCccCCCCCc
Q psy14262        396 RGAMCFCPAGQNPNKTQC  413 (482)
Q Consensus       396 ~~~~C~C~~G~~~~~~~C  413 (482)
                      .+|+|.|++||  .+..|
T Consensus        19 ~~y~C~C~~g~--~G~~C   34 (41)
T d1tpga1          19 SDFVCQCPEGF--AGKSC   34 (41)
T ss_dssp             SCEEEECCTTC--BSSSC
T ss_pred             CCeEECCCCCC--CCCCc
Confidence            35667777766  45555

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=89.66  E-value=0.16  Score=32.89  Aligned_cols=34  Identities=35%  Similarity=0.874  Sum_probs=23.4

Q ss_pred             cccccCCCCCC--ceeeec-CCceEEecCC-CeEECCCCCccc
Q psy14262        416 ADECLIDGSCD--QTCTNT-HLSYVCSCTE-GYTLRPDGKSCT  454 (482)
Q Consensus       416 i~eC~~~~~Cs--~~C~n~-~gsy~C~C~~-Gy~l~~d~~tC~  454 (482)
                      |+.|. ..+|.  .+|++. .++|+|.|+. ||.    |++|+
T Consensus         2 id~C~-~nPC~ngG~C~~~~~~~y~C~C~~~G~~----G~~Ce   39 (42)
T d1q4ga2           2 VNPCC-YYPCQHQGICVRFGLDRYQCDCTRTGYS----GPNCT   39 (42)
T ss_dssp             CCGGG-GCCCCTTCEEEEETTTEEEEECTTSSEE----TTTTC
T ss_pred             CccCc-CCCCCCCCEeeeCCCCCEEEECCCCCcC----CcCcC
Confidence            45565 45673  578775 5789999975 887    66664

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=88.64  E-value=0.036  Score=36.10  Aligned_cols=32  Identities=25%  Similarity=0.594  Sum_probs=23.8

Q ss_pred             CccCCCCcC--CCCCC-CCCccccCCC-CccCCCCCcc
Q psy14262        381 DCENLKCSH--KCSPT-PRGAMCFCPA-GQNPNKTQCV  414 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~-~~~~~C~C~~-G~~~~~~~C~  414 (482)
                      +|.+++|++  +|++. .++|+|.|+. ||  .+.+|+
T Consensus         4 ~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~--~G~~Ce   39 (42)
T d1q4ga2           4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGY--SGPNCT   39 (42)
T ss_dssp             GGGGCCCCTTCEEEEETTTEEEEECTTSSE--ETTTTC
T ss_pred             cCcCCCCCCCCEeeeCCCCCEEEECCCCCc--CCcCcC
Confidence            677777776  78764 5689999986 89  666664

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.48  E-value=0.056  Score=34.93  Aligned_cols=18  Identities=39%  Similarity=0.964  Sum_probs=9.8

Q ss_pred             eeeec-CCceEEecC-CCeE
Q psy14262        428 TCTNT-HLSYVCSCT-EGYT  445 (482)
Q Consensus       428 ~C~n~-~gsy~C~C~-~Gy~  445 (482)
                      +|++. .++|+|.|+ +||.
T Consensus        14 ~C~~~~~~~y~C~C~~~gy~   33 (41)
T d1cvua2          14 ECMSTGFDQYKCDCTRTGFY   33 (41)
T ss_dssp             EEEEEETTEEEEECTTSSEE
T ss_pred             EEEECCCCCEEEeCcCCCcC
Confidence            55543 455666664 4665

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.44  E-value=0.31  Score=30.82  Aligned_cols=33  Identities=33%  Similarity=0.943  Sum_probs=25.2

Q ss_pred             cccccCCCCCCceeeecC-CceEEecCCCeEECCC
Q psy14262        416 ADECLIDGSCDQTCTNTH-LSYVCSCTEGYTLRPD  449 (482)
Q Consensus       416 i~eC~~~~~Cs~~C~n~~-gsy~C~C~~Gy~l~~d  449 (482)
                      ++.|. ...|.++|.... ++|+|.|++||...++
T Consensus         4 vDPCf-~~~CE~qCqP~~~~~Y~CiCaeGFaP~p~   37 (43)
T d1dx5i1           4 VDPCF-RANCEYQCQPLDQTSYLCVCAEGFAPIPH   37 (43)
T ss_dssp             CCGGG-GCCCSSEEEECSSSCEEEECCTTEEEETT
T ss_pred             ccccc-CCCcceeeeeCCCCcceEEeccccccCCC
Confidence            45565 357889998764 5899999999987654

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.37  Score=30.82  Aligned_cols=29  Identities=41%  Similarity=1.052  Sum_probs=21.8

Q ss_pred             CCCCC--ceeeec--CCceEEecCCCeEECCCCCccc
Q psy14262        422 DGSCD--QTCTNT--HLSYVCSCTEGYTLRPDGKSCT  454 (482)
Q Consensus       422 ~~~Cs--~~C~n~--~gsy~C~C~~Gy~l~~d~~tC~  454 (482)
                      +.+|.  .+|++.  .++|+|.|++||.    |..|+
T Consensus         3 ~nPC~ngG~C~~~~~~~~y~C~C~~g~~----G~~Ce   35 (41)
T d1tpga1           3 EPRCFNGGTCQQALYFSDFVCQCPEGFA----GKSCE   35 (41)
T ss_dssp             SCCSCTTCEEEEESSSSCEEEECCTTCB----SSSCC
T ss_pred             CCCCCCCCEEecCCCCCCeEECCCCCCC----CCCcC
Confidence            34563  478875  4679999999998    78885

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.17  E-value=0.54  Score=30.01  Aligned_cols=32  Identities=25%  Similarity=0.587  Sum_probs=26.0

Q ss_pred             CccCCCCcC--CCCCC-CCCccccCC-CCccCCCCCcc
Q psy14262        381 DCENLKCSH--KCSPT-PRGAMCFCP-AGQNPNKTQCV  414 (482)
Q Consensus       381 ~C~~~~C~~--~C~~~-~~~~~C~C~-~G~~~~~~~C~  414 (482)
                      +|.+.+|++  +|++. .++|+|.|+ +||  .+..|+
T Consensus         3 ~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy--~G~~Ce   38 (41)
T d1cvua2           3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGF--YGENCT   38 (41)
T ss_dssp             TTTTCCCCTTCEEEEEETTEEEEECTTSSE--ETTTTC
T ss_pred             cCcCCCCCCCCEEEECCCCCEEEeCcCCCc--CCcCcC
Confidence            788899987  89875 568999996 699  777763

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.62  E-value=0.15  Score=35.97  Aligned_cols=12  Identities=33%  Similarity=0.855  Sum_probs=5.8

Q ss_pred             CCCccccCCCCc
Q psy14262        395 PRGAMCFCPAGQ  406 (482)
Q Consensus       395 ~~~~~C~C~~G~  406 (482)
                      .++|.|.|++||
T Consensus        29 ~~~y~C~C~~gy   40 (63)
T d1haea_          29 PSRYLCKCQPGF   40 (63)
T ss_dssp             SCCEEEECCTTE
T ss_pred             CCCEEeECCCCC
Confidence            334455555555