Psyllid ID: psy14311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MKGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHcccEEEEccHHcccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEccccccccccccccccccccccccccccEEEEcccccEEEEcccccEEEEccccEEEccHHHHHHHHcccEEEEEEEEccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEcccHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHccEEEEcccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccEEEEEcccEEEEccccHHHccccccccEEccccccEccccEEEEEEccHcHEEEcccccEccccccccccEEEEEEEccccHHHHEEEEEEEcc
Coil and Loop (DISEMBL)
mkgiyrrnsiwDKLVFKKVQEDmggnlrlmlagsaplagNVLTFLRCALGCLviegygqtecvapitltiqgdyvpehvgppicccsvklvdvpemdyfahegkgevcvrgnnvflgyfkdpelnsidelgwhhtgdvgmwlptLFFFFIPMLVIMLMYTRIGlrirsrsrhslgkrvegtvhgetkrsqSRKSIIRML
Flexible Loop (DISEMBL)
mkgiyrrnsiwdklvFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRirsrsrhslgkrvegtvhgetkrsqsrksiirml
Low Complexity Region (SEG)
MKGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML
Disordered region (IsUnstruct)
***IYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIR********************************
Disordered Region (DISOPRED)
****YRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML
Disordered Region (DISEMBL)
MKGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSR****************************
Disordered Region (DISPRO)
*KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q9JID6	698	Long-chain-fatty-acid--Co	yes	N/A	0.713	0.203	0.569	3e-45
P41216	699	Long-chain-fatty-acid--Co	yes	N/A	0.713	0.203	0.576	3e-45
P33121	698	Long-chain-fatty-acid--Co	yes	N/A	0.713	0.203	0.583	4e-45
O88813	683	Long-chain-fatty-acid--Co	yes	N/A	0.713	0.207	0.555	1e-44
P18163	699	Long-chain-fatty-acid--Co	no	N/A	0.713	0.203	0.562	3e-44
Q8JZR0	683	Long-chain-fatty-acid--Co	no	N/A	0.713	0.207	0.541	2e-43
Q9ULC5	683	Long-chain-fatty-acid--Co	no	N/A	0.723	0.210	0.513	3e-42
Q9UKU0	697	Long-chain-fatty-acid--Co	no	N/A	0.713	0.203	0.548	3e-42
P33124	697	Long-chain-fatty-acid--Co	no	N/A	0.708	0.202	0.531	4e-41
Q91WC3	697	Long-chain-fatty-acid--Co	no	N/A	0.708	0.202	0.531	8e-41

>sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1

 Score =  181 bits (459), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 82/144 (56%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI R NS+WDKL+F K+Q  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct: 404 GIIRNNSVWDKLIFHKIQSSLGGKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTEC 463

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
            A  +L++ GD+   HVG P+ C  +KLVDV EM+Y A  G+GEVCV+G NVF GY KDP
Sbjct: 464 TAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMNYMAAMGEGEVCVKGPNVFKGYLKDP 523

Query: 123 E--LNSIDELGWHHTGDVGMWLPT 144
                ++D+ GW HTGD+G WLP 
Sbjct: 524 AKTAEALDKDGWLHTGDIGKWLPN 547

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.
Cavia porcellus (taxid: 10141)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  181 bits (458), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI R NS+WDKL+F K+Q  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct: 405 GIVRNNSLWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRTALGCQFYEGYGQTEC 464

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
            A   L++ GD+   HVG P+ C  VKLVDV EM+Y A +G+GEVCV+G NVF GY KDP
Sbjct: 465 TAGCCLSLPGDWTAGHVGAPMPCNYVKLVDVEEMNYLASKGEGEVCVKGANVFKGYLKDP 524

Query: 123 E--LNSIDELGWHHTGDVGMWLPT 144
                ++D+ GW HTGD+G WLP 
Sbjct: 525 ARTAEALDKDGWLHTGDIGKWLPN 548

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI R NS+WD+L+F KVQ  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct: 404 GIIRNNSLWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTEC 463

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
            A   LT+ GD+   HVG P+ C  +KLVDV EM+Y A EG+GEVCV+G NVF GY KDP
Sbjct: 464 TAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDP 523

Query: 123 E--LNSIDELGWHHTGDVGMWLPT 144
                ++D+ GW HTGD+G WLP 
Sbjct: 524 AKTAEALDKDGWLHTGDIGKWLPN 547

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O88813|ACSL5_RAT Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 103/144 (71%), Gaps = 2/144 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI RRNS+WDKLVF K+Q  +GG +RLM+ G+AP++  VLTF R A+GC V E YGQTEC
Sbjct: 389 GIIRRNSLWDKLVFSKIQSSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTEC 448

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
            A  ++T  GD+   HVG P+ C  VKL DV +M+YF+   +GE+C++GNNVF GY KDP
Sbjct: 449 TAGCSITSPGDWTAGHVGTPVSCNFVKLEDVADMNYFSVNNEGEICIKGNNVFKGYLKDP 508

Query: 123 ELNS--IDELGWHHTGDVGMWLPT 144
           E     +D+ GW HTGD+G WLP 
Sbjct: 509 EKTQEVLDKDGWLHTGDIGRWLPN 532

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL at the villus tip of the crypt-villus axis of the small intestine (By similarity). May have a role in the survival of glioma cells (By similarity). May activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage. It was suggested that it may also stimulate fatty acid oxidation. Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/144 (56%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI R NS+WDKL+F K+Q  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct: 405 GIVRNNSLWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTEC 464

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
            A   L++ GD+   HVG P+ C  +KLVDV +M+Y A +G+GEVCV+G NVF GY KDP
Sbjct: 465 TAGCCLSLPGDWTAGHVGAPMPCNYIKLVDVEDMNYQAAKGEGEVCVKGANVFKGYLKDP 524

Query: 123 E--LNSIDELGWHHTGDVGMWLPT 144
                ++D+ GW HTGD+G WLP 
Sbjct: 525 ARTAEALDKDGWLHTGDIGKWLPN 548

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8JZR0|ACSL5_MOUSE Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI RR+S+WDKLVF K+Q  +GG +RLM+ G+AP++  VLTF R A+GC V E YGQTEC
Sbjct: 389 GIIRRDSLWDKLVFSKIQGSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTEC 448

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
               ++T  GD+   HVG P+ C  VKL DV +M+YF+   +GE+C++GNNVF GY KDP
Sbjct: 449 TGGCSITSPGDWTAGHVGTPVACNFVKLEDVADMNYFSVNNEGEICIKGNNVFKGYLKDP 508

Query: 123 ELNS--IDELGWHHTGDVGMWLPT 144
           E     +D+ GW HTGD+G WLP 
Sbjct: 509 EKTQEVLDKDGWLHTGDIGRWLPN 532

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL (By similarity). May have a role in the survival of glioma cells (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  171 bits (433), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 101/146 (69%), Gaps = 2/146 (1%)

Query: 1   MKGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQT 60
            KGI R +S WDKL+F K+Q+ +GG +R+++ G+AP++ +V+TF R A+GC V E YGQT
Sbjct: 387 QKGIIRHDSFWDKLIFAKIQDSLGGRVRVIVTGAAPMSTSVMTFFRAAMGCQVYEAYGQT 446

Query: 61  ECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFK 120
           EC    T T+ GD+   HVG P+ C  VKL DV +M+YF    +GEVC++G NVF GY K
Sbjct: 447 ECTGGCTFTLPGDWTSGHVGVPLACNYVKLEDVADMNYFTVNNEGEVCIKGTNVFKGYLK 506

Query: 121 DPE--LNSIDELGWHHTGDVGMWLPT 144
           DPE    ++D  GW HTGD+G WLP 
Sbjct: 507 DPEKTQEALDSDGWLHTGDIGRWLPN 532

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9UKU0|ACSL6_HUMAN Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4

 Score =  171 bits (433), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI R +SIWD+L F K+Q  +GG +R+++ G+AP +  VL FLR ALGC V EGYGQTEC
Sbjct: 404 GIIRNDSIWDELFFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTEC 463

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
            A  T T  GD+   HVG P+ C  +KLVDV E++Y+A +G+GE+CVRG NVF GY KDP
Sbjct: 464 TAGCTFTTPGDWTSGHVGAPLPCNHIKLVDVEELNYWACKGEGEICVRGPNVFKGYLKDP 523

Query: 123 ELN--SIDELGWHHTGDVGMWLPT 144
           +    ++D  GW HTGD+G WLP 
Sbjct: 524 DRTKEALDSDGWLHTGDIGKWLPA 547

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33124|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 100/143 (69%), Gaps = 2/143 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI R NSIWD+L F K+Q  +GG++R+++ G+AP +  VL FLR ALGC V EGYGQTEC
Sbjct: 404 GIIRNNSIWDELFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTEC 463

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
            A  T T  GD+   HVG P+ C  +KLVD  E++Y+  +G+GE+CV+G NVF GY KD 
Sbjct: 464 TAGCTFTTPGDWTSGHVGAPLPCNHIKLVDAEELNYWTSKGEGEICVKGPNVFKGYLKDE 523

Query: 123 ELN--SIDELGWHHTGDVGMWLP 143
           +    ++D  GW HTGD+G WLP
Sbjct: 524 DRTKEALDSDGWLHTGDIGKWLP 546

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q91WC3|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1

 Score =  166 bits (421), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 100/143 (69%), Gaps = 2/143 (1%)

Query: 3   GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
           GI R NSIWD+L F K+Q  +GG++R+++ G+AP +  VL FLR ALGC V EGYGQTEC
Sbjct: 404 GIIRNNSIWDELFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTEC 463

Query: 63  VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
            A  T T  GD+   HVG P+ C  +KLVD  E++Y+  +G+GE+CV+G NVF GY KD 
Sbjct: 464 TAGCTFTTPGDWTSGHVGAPLPCNHIKLVDAEELNYWTCKGEGEICVKGPNVFKGYLKDE 523

Query: 123 ELN--SIDELGWHHTGDVGMWLP 143
           +    ++D  GW HTGD+G WLP
Sbjct: 524 DRTKEALDSDGWLHTGDIGKWLP 546

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
332026916	623	Long-chain-fatty-acid--CoA ligase 1 [Acr	0.718	0.229	0.765	4e-63
242009014	681	Long-chain-fatty-acid--CoA ligase, putat	0.718	0.209	0.731	9e-63
380021425	657	PREDICTED: long-chain-fatty-acid--CoA li	0.718	0.217	0.744	3e-62
48105753	657	PREDICTED: long-chain-fatty-acid--CoA li	0.718	0.217	0.744	3e-62
350422663	657	PREDICTED: long-chain-fatty-acid--CoA li	0.718	0.217	0.744	6e-62
340723943	619	PREDICTED: long-chain-fatty-acid--CoA li	0.718	0.231	0.744	7e-62
91088831	721	PREDICTED: similar to CG3961 CG3961-PA [	0.718	0.198	0.758	1e-61
383857835	657	PREDICTED: long-chain-fatty-acid--CoA li	0.718	0.217	0.724	1e-61
307211960	681	Long-chain-fatty-acid--CoA ligase 1 [Har	0.718	0.209	0.765	1e-61
307178356	633	Long-chain-fatty-acid--CoA ligase 1 [Cam	0.718	0.225	0.731	5e-61

>gi|332026916|gb|EGI67017.1| Long-chain-fatty-acid--CoA ligase 1 [Acromyrmex echinatior]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 125/145 (86%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           K I R NSIWDK+VFKK+QE MGG LRLML GSAPLAGNVLTF+RCALGC+V+EGYGQTE
Sbjct: 329 KSIVRMNSIWDKIVFKKIQESMGGKLRLMLVGSAPLAGNVLTFIRCALGCVVVEGYGQTE 388

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLTIQGD+VPEHVGPP+ CC VKLVDVPEM+YFA   +GEVCV+G NVF+GY+KD
Sbjct: 389 CTAPITLTIQGDHVPEHVGPPVACCCVKLVDVPEMEYFATNNQGEVCVKGANVFMGYYKD 448

Query: 122 PELNS--IDELGWHHTGDVGMWLPT 144
           PE  +  IDE GWHHTGD+GMW P 
Sbjct: 449 PEKTAEVIDEQGWHHTGDIGMWQPN 473

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009014|ref|XP_002425288.1| Long-chain-fatty-acid--CoA ligase, putative [Pediculus humanus corporis] gi|212509053|gb|EEB12550.1| Long-chain-fatty-acid--CoA ligase, putative [Pediculus humanus corporis]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 126/145 (86%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           +GI R NS+WDKL+FKKVQE++GG LRLML GSAPLAGNVLTF RCALGCLV+EGYGQTE
Sbjct: 387 RGIIRNNSLWDKLIFKKVQENLGGRLRLMLVGSAPLAGNVLTFARCALGCLVVEGYGQTE 446

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C AP+TLT+QGDY+PEHVGPP+ CC +KLVDVPEM+Y+A  G+GEVCV+G NVF GY+K+
Sbjct: 447 CTAPVTLTVQGDYIPEHVGPPVSCCCIKLVDVPEMEYYASSGQGEVCVKGTNVFKGYYKN 506

Query: 122 PE--LNSIDELGWHHTGDVGMWLPT 144
           PE    +ID+ GWHHTGD+G WLP 
Sbjct: 507 PEDTAAAIDDQGWHHTGDIGTWLPN 531

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021425|ref|XP_003694566.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Apis florea]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 125/145 (86%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           KGI R NSIWDKLVF K++E  GG +RLM+ GSAPLAGNVLTF RCALGCL++EGYGQTE
Sbjct: 363 KGIIRNNSIWDKLVFSKIKESTGGRVRLMVVGSAPLAGNVLTFTRCALGCLIVEGYGQTE 422

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLT+QGD+VPEHVGPP+ CC +KLVDVPEM+Y+A + +GEVCV+G NVF+GYFKD
Sbjct: 423 CCAPITLTVQGDHVPEHVGPPVPCCCIKLVDVPEMEYYAKKNQGEVCVKGTNVFVGYFKD 482

Query: 122 PE--LNSIDELGWHHTGDVGMWLPT 144
           PE    +IDE GWHHTGDVGMWLP 
Sbjct: 483 PERTAQAIDEFGWHHTGDVGMWLPN 507

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48105753|ref|XP_395996.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Apis mellifera]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 125/145 (86%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           KGI R NSIWDKLVF K++E  GG +RLM+ GSAPLAGNVLTF RCALGCL++EGYGQTE
Sbjct: 363 KGIIRNNSIWDKLVFSKIKESTGGRVRLMVVGSAPLAGNVLTFTRCALGCLIVEGYGQTE 422

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLT+QGD+VPEHVGPP+ CC +KLVDVPEM+Y+A + +GEVCV+G NVF+GYFKD
Sbjct: 423 CCAPITLTVQGDHVPEHVGPPVPCCCIKLVDVPEMEYYAKKNQGEVCVKGTNVFVGYFKD 482

Query: 122 PE--LNSIDELGWHHTGDVGMWLPT 144
           PE    +IDE GWHHTGDVGMWLP 
Sbjct: 483 PERTAQAIDEYGWHHTGDVGMWLPN 507

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422663|ref|XP_003493242.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Bombus impatiens]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 124/145 (85%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           KGI R NS+WDKL F K++E  GG LRLM+ GSAPLAGNVLTF RCALGC+V+EGYGQTE
Sbjct: 363 KGIIRNNSVWDKLAFAKIKESTGGRLRLMVVGSAPLAGNVLTFTRCALGCIVVEGYGQTE 422

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLT+QGD+VPEHVGPP+ CC +KLVDVPEM+YFA + +GEVCV+G NVF+GYFKD
Sbjct: 423 CGAPITLTVQGDHVPEHVGPPVPCCCIKLVDVPEMEYFAKKNQGEVCVKGTNVFVGYFKD 482

Query: 122 PELNS--IDELGWHHTGDVGMWLPT 144
           PE  +  IDE GWHHTGDVGMWLP 
Sbjct: 483 PERTAQVIDEFGWHHTGDVGMWLPN 507

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723943|ref|XP_003400346.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Bombus terrestris]

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 124/145 (85%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           KGI R NS+WDKL F K++E  GG LRLM+ GSAPLAGNVLTF RCALGC+V+EGYGQTE
Sbjct: 325 KGIIRNNSVWDKLAFAKIRESTGGRLRLMVVGSAPLAGNVLTFTRCALGCIVVEGYGQTE 384

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLT+QGD+VPEHVGPP+ CC +KLVDVPEM+YFA + +GEVCV+G NVF+GYFKD
Sbjct: 385 CGAPITLTVQGDHVPEHVGPPVPCCCIKLVDVPEMEYFAKKNQGEVCVKGTNVFVGYFKD 444

Query: 122 PELNS--IDELGWHHTGDVGMWLPT 144
           PE  +  IDE GWHHTGDVGMWLP 
Sbjct: 445 PERTAQVIDEFGWHHTGDVGMWLPN 469

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088831|ref|XP_970461.1| PREDICTED: similar to CG3961 CG3961-PA [Tribolium castaneum] gi|270012333|gb|EFA08781.1| hypothetical protein TcasGA2_TC006471 [Tribolium castaneum]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/145 (75%), Positives = 123/145 (84%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           +GI R NS WD LVF+KVQE MGG LRLML GSAPLA NVLTF+RCALGCLVIEGYGQTE
Sbjct: 427 RGILRNNSFWDMLVFRKVQEGMGGRLRLMLVGSAPLAENVLTFMRCALGCLVIEGYGQTE 486

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLTIQGD+VP HVGPP+ CC VKL+DVPEM+Y+A   +GEVCV+G NVF GY+KD
Sbjct: 487 CTAPITLTIQGDHVPGHVGPPVACCCVKLIDVPEMEYWAKNNQGEVCVKGTNVFQGYYKD 546

Query: 122 PELN--SIDELGWHHTGDVGMWLPT 144
           PE    +IDE+GWHHTGDVGMWLP 
Sbjct: 547 PEKTEETIDEMGWHHTGDVGMWLPN 571

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857835|ref|XP_003704409.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Megachile rotundata]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 105/145 (72%), Positives = 124/145 (85%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           KGI R NS+WDKLVF K++E  GG LRLM+ GSAPLAG VLTF RCALGCL++EGYGQTE
Sbjct: 363 KGIIRNNSLWDKLVFAKIKESTGGRLRLMMVGSAPLAGKVLTFARCALGCLIVEGYGQTE 422

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLT+QGD+VPEHVGPP+ CC +KLVDVPEM+Y+ H+ +GEVC++G NVF+GYFKD
Sbjct: 423 CCAPITLTVQGDHVPEHVGPPVPCCCIKLVDVPEMEYYVHKNQGEVCIKGTNVFVGYFKD 482

Query: 122 PELNS--IDELGWHHTGDVGMWLPT 144
           PE  +  IDE GWHHTGD+GMWLP 
Sbjct: 483 PEKTAEVIDEFGWHHTGDIGMWLPN 507

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211960|gb|EFN87872.1| Long-chain-fatty-acid--CoA ligase 1 [Harpegnathos saltator]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 122/145 (84%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           KGI R NSIWDK+VFKK+Q  MGG LRLML GSAPLAGNVLTF RCALGCLV+EGYGQTE
Sbjct: 387 KGIVRSNSIWDKIVFKKIQNSMGGKLRLMLVGSAPLAGNVLTFTRCALGCLVVEGYGQTE 446

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLTIQGD+VPEHVGPP+ CC VKLVDVPEM YFA + +GEVCV+G NVF+GY+KD
Sbjct: 447 CCAPITLTIQGDHVPEHVGPPVACCCVKLVDVPEMQYFAAKNQGEVCVKGTNVFIGYYKD 506

Query: 122 PELNS--IDELGWHHTGDVGMWLPT 144
            E     IDE GWHHTGD+GMW P 
Sbjct: 507 FEKTHEVIDEDGWHHTGDIGMWQPN 531

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178356|gb|EFN67105.1| Long-chain-fatty-acid--CoA ligase 1 [Camponotus floridanus]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 122/145 (84%), Gaps = 2/145 (1%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           K I R  SIWDK+VF+K+QE MGG LRLML GSAPLAGNVLTF RCALGC+++EGYGQTE
Sbjct: 339 KSIVRTTSIWDKIVFRKIQESMGGRLRLMLVGSAPLAGNVLTFTRCALGCVIVEGYGQTE 398

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
           C APITLTIQGD+VPEHVGPP+ CC +KL DVPEM+Y+A   +GEVCV+G NVF+GYFKD
Sbjct: 399 CSAPITLTIQGDHVPEHVGPPVACCCIKLADVPEMEYYATNNQGEVCVKGTNVFMGYFKD 458

Query: 122 PELNS--IDELGWHHTGDVGMWLPT 144
           PE  +  IDE GWHHTGD+GMW P 
Sbjct: 459 PEKTAEVIDEQGWHHTGDIGMWQPN 483

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.713	0.201	0.736	1.9e-58
UNIPROTKB|Q1LZF6	683	ACSL5 "Acyl-CoA synthetase lon	0.713	0.207	0.576	6.8e-45
UNIPROTKB|Q0VCZ8	699	ACSL1 "Acyl-CoA synthetase lon	0.708	0.201	0.587	7.3e-45
ZFIN|ZDB-GENE-050809-115	697	acsl1 "acyl-CoA synthetase lon	0.708	0.202	0.594	9.2e-45
ZFIN|ZDB-GENE-040912-169	681	acsl5 "acyl-CoA synthetase lon	0.718	0.209	0.572	2e-44
ZFIN|ZDB-GENE-040801-88	729	zgc:101071 "zgc:101071" [Danio	0.718	0.196	0.602	2.4e-44
UNIPROTKB|Q5F420	699	ACSL1 "Uncharacterized protein	0.708	0.201	0.580	3.6e-44
UNIPROTKB|F1RSZ3	699	ACSL1 "Uncharacterized protein	0.708	0.201	0.580	1e-43
UNIPROTKB|B7Z3Z9	527	ACSL1 "Long-chain-fatty-acid--	0.708	0.267	0.587	1.3e-43
UNIPROTKB|E7EPM6	664	ACSL1 "Long-chain-fatty-acid--	0.708	0.212	0.587	1.6e-43

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 106/144 (73%), Positives = 122/144 (84%)

Query:     2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
             +G+ RRN  WDKLVFKKV +  GGNLRLM+ GSAPLAGNVLTF+RCALGCLV+EGYGQTE
Sbjct:   410 RGVLRRNGCWDKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTE 469

Query:    62 CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
             C   ITLT+QGD+VP HVGPP+ C +VKLVDVPEM+YFA++  GEVCVRG+NVF GY+KD
Sbjct:   470 CTGAITLTVQGDHVPNHVGPPVSCNAVKLVDVPEMEYFANQNTGEVCVRGSNVFHGYYKD 529

Query:   122 PE--LNSIDELGWHHTGDVGMWLP 143
             PE    +ID  GWHHTGDVGMWLP
Sbjct:   530 PEKTAEAIDSEGWHHTGDVGMWLP 553

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q1LZF6 ACSL5 "Acyl-CoA synthetase long-chain family member 5" [Bos taurus (taxid:9913)]

 Score = 473 (171.6 bits), Expect = 6.8e-45, P = 6.8e-45
 Identities = 83/144 (57%), Positives = 110/144 (76%)

Query:     2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
             +GI RR+S+WDKL+F K+QE +GG +RL++ G+AP++  VLTFLR ALGCLV E YGQTE
Sbjct:   388 RGIIRRDSLWDKLIFGKIQESLGGKVRLLITGAAPISPPVLTFLRAALGCLVFEAYGQTE 447

Query:    62 CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
             C A  T+T+ GD+   HVG P+ C  VKL DVP+M+YFA   +GE+C+RG+NVF GY K+
Sbjct:   448 CTAGCTVTLPGDWKSGHVGVPMACNHVKLEDVPDMNYFAVNNEGEICIRGHNVFKGYLKE 507

Query:   122 PELN--SIDELGWHHTGDVGMWLP 143
             PE    ++D+ GW HTGD+G WLP
Sbjct:   508 PEKTQETLDKDGWLHTGDIGRWLP 531

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q0VCZ8 ACSL1 "Acyl-CoA synthetase long-chain family member 1" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 7.3e-45, P = 7.3e-45
 Identities = 84/143 (58%), Positives = 106/143 (74%)

Query:     3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
             GI R NS+WDKL+F K+Q  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct:   405 GIIRNNSLWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTEC 464

Query:    63 VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
              A   LT+ GD+   HVGPP+ C  +KLVDV EM+Y A +G+GEVCV+G+NVF GY KDP
Sbjct:   465 TAGCCLTVAGDWTAGHVGPPMPCSIIKLVDVEEMNYLAAKGEGEVCVKGSNVFQGYLKDP 524

Query:   123 --ELNSIDELGWHHTGDVGMWLP 143
                  ++D+ GW HTGD+G WLP
Sbjct:   525 VKTAEALDKDGWLHTGDIGKWLP 547

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-050809-115 acsl1 "acyl-CoA synthetase long-chain family member 1" [Danio rerio (taxid:7955)]

 Score = 473 (171.6 bits), Expect = 9.2e-45, P = 9.2e-45
 Identities = 85/143 (59%), Positives = 107/143 (74%)

Query:     3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
             G+ R++S+WDKL+F KVQ  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct:   403 GVVRKDSMWDKLIFSKVQASLGGRVRLMITGAAPVSPTVLTFLRAALGCQFYEGYGQTEC 462

Query:    63 VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
              A  T+++ GD+   HVG P+ C  VKLVDV EM+YFA  G+GEVCV+G NVF GY KDP
Sbjct:   463 TAGCTMSLPGDWTAGHVGAPLPCNFVKLVDVAEMNYFAANGEGEVCVKGPNVFQGYLKDP 522

Query:   123 ELNS--IDELGWHHTGDVGMWLP 143
             E  S  +D+ GW HTGD+G WLP
Sbjct:   523 EQTSGAVDKAGWLHTGDIGKWLP 545

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040912-169 acsl5 "acyl-CoA synthetase long-chain family member 5" [Danio rerio (taxid:7955)]

 Score = 469 (170.2 bits), Expect = 2.0e-44, P = 2.0e-44
 Identities = 83/145 (57%), Positives = 108/145 (74%)

Query:     2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
             +GI R +S+WDKL+F KVQE +GG +R+M+ G+AP++ +VLTFLR  LGC + E YGQTE
Sbjct:   388 QGIIRNDSMWDKLIFHKVQESLGGRVRVMVTGAAPISPSVLTFLRACLGCQIFEAYGQTE 447

Query:    62 CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKD 121
             C A  + TI GD+   HVG PI C ++KLVDV EMDYFA  G+GE+CV+G NVF GY  D
Sbjct:   448 CTAACSFTIPGDWKTGHVGAPIPCNTIKLVDVEEMDYFASNGEGEICVKGTNVFRGYLGD 507

Query:   122 PE--LNSIDELGWHHTGDVGMWLPT 144
             PE    ++D+ GW HTGD+G WLP+
Sbjct:   508 PEKTAEALDKDGWLHTGDIGKWLPS 532

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040801-88 zgc:101071 "zgc:101071" [Danio rerio (taxid:7955)]

 Score = 471 (170.9 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 88/146 (60%), Positives = 108/146 (73%)

Query:     1 MK-GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQ 59
             MK GI RR+SIWDK++FKKVQ  +GG +R+M+ G+AP++  VLTFLR ALGC   EGYGQ
Sbjct:   400 MKSGIMRRDSIWDKIIFKKVQASVGGCVRMMVTGAAPISEPVLTFLRAALGCQFYEGYGQ 459

Query:    60 TECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYF 119
             TEC A  T T+ GD+   HVG P+ C  +KLVDV EM+Y+A  G+GEVCVRG N F GY 
Sbjct:   460 TECTAGSTTTLPGDWTAGHVGAPLPCNDIKLVDVAEMNYYAANGEGEVCVRGPNAFKGYL 519

Query:   120 KDPELN--SIDELGWHHTGDVGMWLP 143
             KDPE    ++DE GW HTGD+G WLP
Sbjct:   520 KDPEKTKEALDEEGWVHTGDIGRWLP 545

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5F420 ACSL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 468 (169.8 bits), Expect = 3.6e-44, P = 3.6e-44
 Identities = 83/143 (58%), Positives = 108/143 (75%)

Query:     3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
             GI R NS WDK++F+K+Q  +GG +RLM+ G+AP++ +VLTFLR ALGC   EGYGQTEC
Sbjct:   405 GIIRNNSFWDKVIFRKIQASLGGKVRLMVTGAAPVSASVLTFLRTALGCQFYEGYGQTEC 464

Query:    63 VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
              A  +L++ GD+   HVG P+ C  +KLVDV EM+Y A +G+GEVCV+G NVFLGY KDP
Sbjct:   465 TAGCSLSMPGDWTAGHVGAPMACNIIKLVDVQEMNYLAAKGEGEVCVKGPNVFLGYLKDP 524

Query:   123 E--LNSIDELGWHHTGDVGMWLP 143
             E    ++D+ GW HTGD+G WLP
Sbjct:   525 EKTAEALDKDGWLHTGDIGKWLP 547

GO:0003824 "catalytic activity" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|F1RSZ3 ACSL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 464 (168.4 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 83/143 (58%), Positives = 105/143 (73%)

Query:     3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
             GI R NS+WDKL+F K+Q  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct:   405 GIIRNNSLWDKLIFHKIQSSLGGKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTEC 464

Query:    63 VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
              A  +LT+ GD+   HVG P+ C  +KLVDV EM+Y A +G+GEVCV+G NVF GY KDP
Sbjct:   465 TAGCSLTVPGDWTAGHVGAPMPCSLIKLVDVEEMNYLAAKGEGEVCVKGPNVFQGYLKDP 524

Query:   123 E--LNSIDELGWHHTGDVGMWLP 143
                  ++D+ GW HTGD+G WLP
Sbjct:   525 AKTAEALDKDGWLHTGDIGKWLP 547

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|B7Z3Z9 ACSL1 "Long-chain-fatty-acid--CoA ligase 1" [Homo sapiens (taxid:9606)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 84/143 (58%), Positives = 104/143 (72%)

Query:     3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
             GI R NS+WD+L+F KVQ  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct:   233 GIIRNNSLWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTEC 292

Query:    63 VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
              A   LT+ GD+   HVG P+ C  +KLVDV EM+Y A EG+GEVCV+G NVF GY KDP
Sbjct:   293 TAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDP 352

Query:   123 E--LNSIDELGWHHTGDVGMWLP 143
                  ++D+ GW HTGD+G WLP
Sbjct:   353 AKTAEALDKDGWLHTGDIGKWLP 375

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0034201 "response to oleic acid" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|E7EPM6 ACSL1 "Long-chain-fatty-acid--CoA ligase 1" [Homo sapiens (taxid:9606)]

 Score = 460 (167.0 bits), Expect = 1.6e-43, P = 1.6e-43
 Identities = 84/143 (58%), Positives = 104/143 (72%)

Query:     3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
             GI R NS+WD+L+F KVQ  +GG +RLM+ G+AP++  VLTFLR ALGC   EGYGQTEC
Sbjct:   370 GIIRNNSLWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTEC 429

Query:    63 VAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP 122
              A   LT+ GD+   HVG P+ C  +KLVDV EM+Y A EG+GEVCV+G NVF GY KDP
Sbjct:   430 TAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDP 489

Query:   123 E--LNSIDELGWHHTGDVGMWLP 143
                  ++D+ GW HTGD+G WLP
Sbjct:   490 AKTAEALDKDGWLHTGDIGKWLP 512

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JID6	ACSL1_CAVPO	6, ., 2, ., 1, ., 3	0.5694	0.7135	0.2034	yes	N/A
P41216	ACSL1_MOUSE	6, ., 2, ., 1, ., 3	0.5763	0.7135	0.2031	yes	N/A
O88813	ACSL5_RAT	6, ., 2, ., 1, ., 3	0.5555	0.7135	0.2079	yes	N/A
P33121	ACSL1_HUMAN	6, ., 2, ., 1, ., 3	0.5833	0.7135	0.2034	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	199
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	6e-71
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	5e-51
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	7e-36
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	5e-35
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-32
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	5e-32
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-30
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	4e-30
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-29
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-22
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	8e-22
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-21
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	9e-21
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	6e-20
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	4e-19
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-19
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-18
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-17
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	3e-17
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-16
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-16
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-16
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-16
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	5e-16
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-13
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-13
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-13
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-12
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-12
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	6e-12
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	6e-12
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	9e-12
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-11
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-11
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-11
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-11
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	7e-11
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	9e-11
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	9e-11
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-10
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-10
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-10
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	6e-10
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-09
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-09
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-09
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-09
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-09
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-09
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-09
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-09
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-08
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-08
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-07
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-07
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-07
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-07
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-07
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	4e-07
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-07
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-07
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	5e-07
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-07
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-06
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-06
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-06
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-06
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	5e-06
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	8e-06
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	9e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-05
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	1e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-05
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-05
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-05
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-05
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-05
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	4e-05
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	5e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	8e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	8e-05
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	9e-05
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	9e-05
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	1e-04
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-04
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-04
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	0.001
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	0.001
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	0.001
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	0.002
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	0.002
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	0.002
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	0.002
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	0.002
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	0.002
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	0.002
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	0.004
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	0.004
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.004

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  223 bits (572), Expect = 6e-71
 Identities = 80/146 (54%), Positives = 102/146 (69%), Gaps = 4/146 (2%)

Query: 2   KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE 61
           +G    + +WDKLVFKK++  +GG +RLML+G APL+ +   FLR ALGC V++GYG TE
Sbjct: 246 RGHGYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTE 305

Query: 62  CVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFA--HEGKGEVCVRGNNVFLGYF 119
             A  TL+  GD    HVGPP+ CC +KLVDVPEM YFA     +GE+C+RG NVF GY+
Sbjct: 306 TCAGGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYY 365

Query: 120 KDPELNS--IDELGWHHTGDVGMWLP 143
           K+PE  +   DE GW HTGD+G WLP
Sbjct: 366 KNPEKTAEAFDEDGWFHTGDIGEWLP 391

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  173 bits (441), Expect = 5e-51
 Identities = 67/139 (48%), Positives = 92/139 (66%), Gaps = 5/139 (3%)

Query: 10  IWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT 69
           +WD+LVF K++  +GG +R M +G++PL+ +V+ FLR   G  V+EGYG TE    I+  
Sbjct: 361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGM 420

Query: 70  IQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEG---KGEVCVRGNNVFLGYFKDPELNS 126
            +GD +  HVG P   C VKLVDVPEM+Y + +    +GE+CVRG  +F GY+KD     
Sbjct: 421 DEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTR 480

Query: 127 --IDELGWHHTGDVGMWLP 143
             IDE GW HTGD+G+WLP
Sbjct: 481 EVIDEDGWLHTGDIGLWLP 499

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  131 bits (332), Expect = 7e-36
 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 14/141 (9%)

Query: 12  DKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ 71
           D+LVF+K+++ +GG +R  L+G APL+  +L F R +LG  ++EGYG TE  A +++   
Sbjct: 340 DRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR-SLGIPILEGYGLTETSAVVSVNPP 398

Query: 72  GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDE 129
             +V   VG P+    VK+ D            GE+ VRG NV  GY+K+PE    +  E
Sbjct: 399 DRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTE 447

Query: 130 LGWHHTGDVGMWLPTLFFFFI 150
            GW  TGD+G      +    
Sbjct: 448 DGWFRTGDLGELDEDGYLVIT 468

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  128 bits (323), Expect = 5e-35
 Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 29/147 (19%)

Query: 10  IWDKL---VFKKVQED------------MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVI 54
           +W+K+   +  KV                GG LR  ++G APL   VL F R ALG  ++
Sbjct: 185 VWEKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFR-ALGIPIL 243

Query: 55  EGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV 114
           EGYG TE     T+   GD     VG P+    V++ +            GE+ VRG NV
Sbjct: 244 EGYGLTETSGVATVNRPGDIRIGTVGKPLPGVEVRIAE-----------DGEILVRGPNV 292

Query: 115 FLGYFKDPELN--SIDELGWHHTGDVG 139
             GY+K+PE    ++DE GW HTGD+G
Sbjct: 293 MKGYYKNPEATAEALDEDGWLHTGDIG 319

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  122 bits (307), Expect = 2e-32
 Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 18/145 (12%)

Query: 10  IWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVA----- 64
           + DKLVF KV++ +GGN+R++L+G+APLA +V +FLR    C V++GYG TE  A     
Sbjct: 371 LCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVS 430

Query: 65  -PITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDY--FAHEGKGEVCVRGNNVFLGYFKD 121
            P  L + G      VGPP+    ++L  VPEM+Y   A   +GE+C+RG  +F GY+K 
Sbjct: 431 LPDELDMLGT-----VGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKR 485

Query: 122 PELNS---IDELGWHHTGDVGMWLP 143
            +L     ID  GW HTGDVG W P
Sbjct: 486 EDLTKEVLID--GWLHTGDVGEWQP 508

Length = 666

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  121 bits (305), Expect = 5e-32
 Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 14/137 (10%)

Query: 11  WDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE--CVAPITL 68
           W++ VF   +  +GG +R ML+G  PL+     F+    G  VI+G+G TE  C   I  
Sbjct: 414 WNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGM-VIQGWGLTETVCCGGIQR 472

Query: 69  TIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAH----EGKGEVCVRGNNVFLGYFKDPEL 124
           T  GD  P  VG  +    +KL+D  E   + H    E +GE+ +RG  +F GY+K  EL
Sbjct: 473 T--GDLEPNAVGQLLKGVEMKLLDTEE---YKHTDTPEPRGEILLRGPFLFKGYYKQEEL 527

Query: 125 NS--IDELGWHHTGDVG 139
               +DE GW HTGDVG
Sbjct: 528 TREVLDEDGWFHTGDVG 544

Length = 700

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  117 bits (295), Expect = 1e-30
 Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 4/136 (2%)

Query: 12  DKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ 71
           D+LVF K++E +GG +RL+L+G+APL  +V  FLR     ++ +GYG TE       +I 
Sbjct: 370 DRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIA 429

Query: 72  GDY-VPEHVGPPICCCSVKLVDVPEMDY--FAHEGKGEVCVRGNNVFLGYFKDPEL-NSI 127
             + +   VG P+     +L  VPEM Y   +   +GE+C+RGN +F GY K  +L   +
Sbjct: 430 NVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEV 489

Query: 128 DELGWHHTGDVGMWLP 143
              GW HTGD+G W P
Sbjct: 490 LIDGWFHTGDIGEWQP 505

Length = 660

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  115 bits (290), Expect = 4e-30
 Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 4/136 (2%)

Query: 12  DKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ 71
           D L F+KV+  +GG LRL+++G APL+  +  FLR      V++GYG TE + P TL   
Sbjct: 370 DFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFP 429

Query: 72  GDY-VPEHVGPPICCCSVKLVDVPEMDY--FAHEGKGEVCVRGNNVFLGYFKDPEL-NSI 127
            +  +   VG P     ++L +VPEM Y       +GE+CVRG  +F GY+K+PEL   +
Sbjct: 430 DEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEV 489

Query: 128 DELGWHHTGDVGMWLP 143
            + GW HTGD+G  LP
Sbjct: 490 MKDGWFHTGDIGEILP 505

Length = 660

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  113 bits (285), Expect = 2e-29
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 9/143 (6%)

Query: 10  IWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT 69
           +WD LVFKK++  +GG +R ML+G APL+G+   F+   LG  + +GYG TE  A  T +
Sbjct: 405 LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFS 464

Query: 70  IQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEG---KGEVCVRGNNVFLGYFKDP---- 122
              D     VGPP+ CC VKLV   E  Y   +    +GE+ + G +V LGYFK+     
Sbjct: 465 EWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTD 524

Query: 123 ELNSIDELG--WHHTGDVGMWLP 143
           E+  +DE G  W +TGD+G + P
Sbjct: 525 EVYKVDERGMRWFYTGDIGQFHP 547

Length = 696

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 18  KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGDYVP 76
           K  +D+  +LRL+L+G APL   +L       G   ++EGYG TE    +T+    D + 
Sbjct: 284 KDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA 343

Query: 77  EH--VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGW 132
           +   VG P+    V++VD P+         GE+ VRG NV  GY+  PE    + DE GW
Sbjct: 344 KPGSVGRPLPGVEVRIVD-PDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGW 402

Query: 133 HHTGDVGMWLPTLFFFFI 150
             TGD+G      + + +
Sbjct: 403 LRTGDLGYVDEDGYLYIV 420

Length = 534

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 91.5 bits (228), Expect = 8e-22
 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
           +LR++ +G+APL+  +   LR       + +GYG TE     TLT  GD  P  VG  + 
Sbjct: 264 SLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVP 323

Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMWL 142
               K+VD           +GE+CV+G  +  GY  +PE    +IDE GW HTGD+G + 
Sbjct: 324 NVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFD 383

Query: 143 PTLFFFFI 150
                F+I
Sbjct: 384 ED-GNFYI 390

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 90.5 bits (225), Expect = 1e-21
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLT--IQGDYVPEHVGPP 82
           +LRL+L+G  PL   +L  LR   G   ++ GYG TE     T       +  P  +G P
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRP 307

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGW--HHTGDV 138
           +    VK++D  E +       GE+C+RG  V  GY  DPEL      E GW  + TGD+
Sbjct: 308 LPGVEVKVLD-EEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDL 366

Query: 139 GMWLPTLFFFFI 150
           G W    +   +
Sbjct: 367 GRWDEDGYLEIL 378

Length = 412

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 88.8 bits (221), Expect = 9e-21
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 16  FKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYV 75
            +    +   +LRL++AG+  L            G  ++EGYG TEC   I++       
Sbjct: 250 ARNAHPEDFSSLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK 309

Query: 76  PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE---LNSIDELGW 132
           P  VG P+    V++V     +       G + VRG NV  GY  + E      +   GW
Sbjct: 310 PGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGW 369

Query: 133 HHTGDVGM 140
           + TGD+G 
Sbjct: 370 YDTGDIGK 377

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 86.2 bits (214), Expect = 6e-20
 Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 13  KLVFKKVQEDMG-GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ 71
            LV KK+ + +G    RL  +G+AP+   ++ + R  LG  + EGYG TE  A  TL   
Sbjct: 262 SLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAYSTLNYP 320

Query: 72  GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL--NSIDE 129
           GD     VG PI    +K+ +            GE+ +R   +  GY+KDPE    +  E
Sbjct: 321 GDRRIGTVGKPIPGVELKISED-----------GEILIRSPGLMSGYYKDPEKTAEAFTE 369

Query: 130 LGWHHTGDVGMW 141
            GW HTGD G  
Sbjct: 370 DGWLHTGDKGEI 381

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPICC 85
           LRL+++G  PL+  +L       G  ++EGYG TE     +         P  VG P+  
Sbjct: 118 LRLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPG 177

Query: 86  CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLP 143
             V++VD  E         GE+ VRG  V  GY+ +P   +    E GW+ TGD+G    
Sbjct: 178 VEVRVVD-EEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDE 236

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 83.4 bits (207), Expect = 5e-19
 Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
           NLRL ++GSA L   VL       G  ++E YG TE    ++  + G+  P  VG P+  
Sbjct: 207 NLRLFVSGSAALPVPVLERWEERTGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPG 266

Query: 86  CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMW 141
             V++VD    +  A    GE+ VRG NVF  Y+  PE    +  E GW  TGDVG+ 
Sbjct: 267 VEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVV 324

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 80.6 bits (200), Expect = 3e-18
 Identities = 44/119 (36%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIE-GYGQTECVAPITLTIQGDYVPEH---VGPP 82
           LR  ++G AP+   ++  +R       I  GYG TE     T T   D   +    VG P
Sbjct: 119 LRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRP 178

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
           +    VK+VD P+         GE+CVRG +V  GY+ DPE    +ID  GW HTGD+G
Sbjct: 179 LPGVEVKIVD-PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLG 236

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 12  DKLVFKKVQEDMG-GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTI 70
            KLVFKKV++ +G    +    G+AP++   L F   +L   ++E YG +E   P T++ 
Sbjct: 304 KKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-LSLNIPIMELYGMSETSGPHTVSN 362

Query: 71  QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SID 128
             +Y     G  +  C  K+ + P+ D     G GE+C+ G +VF+GY    E    +ID
Sbjct: 363 PQNYRLLSCGKALPGCETKIHN-PDAD-----GIGEICIWGRHVFMGYLNMEEKTEEAID 416

Query: 129 ELGWHHTGDVG 139
           E GW H+GD+G
Sbjct: 417 EDGWLHSGDLG 427

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 78.7 bits (195), Expect = 3e-17
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 26  NLRLMLAGSAPLAGNVLT-FLRCALGCLVIEGYGQTECVAPITL--TIQGDYVPEHVGPP 82
           +LRL ++G APL   V   F     G  ++EGYG TE  +P+T    + G+  P  +G P
Sbjct: 243 SLRLCISGGAPLPVEVAERFEE-KTGAPLVEGYGLTET-SPVTTVNPLDGERKPGSIGLP 300

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
           +    VK+VD    +    E  GE+ VRG  V  GY+  PE     + + GW  TGD+G
Sbjct: 301 LPGTEVKIVDDEGNELPPGE-VGELVVRGPQVMKGYWNRPEETAEVLTD-GWLRTGDIG 357

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYV--PEHVGPPI 83
            LR + + SAPL   VL  L    G  V+E YG TE    I        V  P  VG P 
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPA 178

Query: 84  CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGM 140
               V ++D  +        +GE+ +RG NV  GY  +PE N      GW  TGD+G 
Sbjct: 179 -GVEVAILD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGY 234

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGD---YVPEHVGPP 82
           LRL + G+A +   +L      LG  +V+ GYG +E     T     D    V   +G  
Sbjct: 283 LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTA 342

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGM 140
           I     K+V+    +    E  GE+ VRG NV  GY+ DPE  +  ID  GW HTGD+G 
Sbjct: 343 IAGVENKIVNELGEEVPVGE-VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGR 401

Length = 513

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 18/127 (14%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCA--LGCLVIEGYGQTECVAPITLTIQGDYVPEH----- 78
           +LRL++ G A L   +L         G  +++GYG TE    +++    D +P       
Sbjct: 282 SLRLVIYGGAALPPALL--REFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRR 339

Query: 79  -VGPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELNSIDEL---GW 132
             G P+     ++VD  + D    +G   GE+ VRG  +  GY+  PE     E    GW
Sbjct: 340 SAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEAT--AETIDGGW 396

Query: 133 HHTGDVG 139
            HTGDVG
Sbjct: 397 LHTGDVG 403

Length = 521

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 75.2 bits (186), Expect = 2e-16
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 18/123 (14%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPPI 83
           LRL++ G+AP+   +   +    G + ++GYG TE   P T  +  +        VG P+
Sbjct: 117 LRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPV 175

Query: 84  CCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTG 136
               V++VD     +P       E  GE+ VRG  V  GY+  PE  + + L  GW HTG
Sbjct: 176 PGVEVRIVDEDGRELP-----PGE-VGEIVVRGPAVMAGYWNRPEATA-EALRDGWLHTG 228

Query: 137 DVG 139
           D+G
Sbjct: 229 DLG 231

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 75.0 bits (185), Expect = 5e-16
 Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 27  LRLMLAGSAPLAGNVLT-FLRCALGCLVIEGYGQTE--CVAPITLTIQGDYVPEHVGPPI 83
           L+ + +G+APL   +   F     G  + +GYG TE   V  +    + D  P  VG  +
Sbjct: 277 LKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLV 336

Query: 84  CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL--NSIDELGWHHTGDVG 139
                K+VD    +       GE+ VRG  V  GY  +PE    +ID+ GW HTGD+G
Sbjct: 337 PNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLG 394

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           L+++  G A L   V   L+   G L  EGYG TE              P+ +G P+   
Sbjct: 201 LKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGT 260

Query: 87  SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-----IDELGWHHTGDVGMW 141
             +++D    +      +GE+ VRG  VF GY+  PE  +     +D   +  TGD+G  
Sbjct: 261 DARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYI 320

Query: 142 LPTLFFFF 149
               +FFF
Sbjct: 321 DEEGYFFF 328

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 25  GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC--VAPITLTIQGDYVPEHVGPP 82
            +LR+ L G AP+   +      ALG  V+  YG TE   V   T     D      G P
Sbjct: 208 PSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRP 267

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
           +    V++VD  + +      +GE+ VRG  +FLGY  DP  N  +  + GW  TGD+G
Sbjct: 268 VPGVEVRIVD-DDGNDVPPGEEGELQVRGPQLFLGYL-DPPDNTEAFTDDGWFRTGDLG 324

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 28  RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCS 87
           RL+++GSA L   V   L    G   +E YG TE +  ++    G+  P  VG P+    
Sbjct: 244 RLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVE 303

Query: 88  VKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
            +LVD        H+G+  GE+ VRG  +F GY   P+    +    GW  TGDV 
Sbjct: 304 TRLVDEDGGP-VPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVA 358

Length = 471

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 23/145 (15%)

Query: 17  KKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVP 76
           +  +  +   +R+M AG+ P     +      LG  V   YG TE   PIT+    ++ P
Sbjct: 274 EADKLPLPRPVRVMTAGAPPPP--AVIKKMEELGFEVTHVYGLTETYGPITV---CEWKP 328

Query: 77  EHVGPP---------------ICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYF 119
           E    P               +    V +VD   M     +GK  GE+ +RGN V  GY+
Sbjct: 329 EWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYY 388

Query: 120 KDPELNSID-ELGWHHTGDVGMWLP 143
           K+PE        GW H+GD+ +  P
Sbjct: 389 KNPEATEEAFAGGWFHSGDLAVVHP 413

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPI-TLTIQGDY-VPEHVGPPI 83
           +LR +L G AP     L       G  +   YG TE  + + TL           VG P+
Sbjct: 190 SLRAVLLGGAP-IPPSLLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248

Query: 84  CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMW 141
               +++V+            GE+ VRG ++FLGY     L   +DE GW HTGD+G  
Sbjct: 249 PGRELRIVN---------PQDGEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYL 298

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 63.0 bits (154), Expect = 6e-12
 Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 12/135 (8%)

Query: 26  NLRLMLAGSAPLAGNVLTFL-RCALGCLVIEGYGQTEC-VA----PITLTIQGDYVPEHV 79
           +LR  L     L   +   L R      +I  YG TE  VA     +T        P  +
Sbjct: 215 SLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPI 274

Query: 80  GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN-----SIDELGWHH 134
           G P       ++D  +        +GE+ + G  V  GY  +PE         +   W+ 
Sbjct: 275 GYPKPGLRALILD-EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYR 333

Query: 135 TGDVGMWLPTLFFFF 149
           TGD+          +
Sbjct: 334 TGDLVYLEDDGLLVY 348

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 23/152 (15%)

Query: 3    GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC 62
             +Y RN        KK+   M  +LRL++AG+  L   V        G  ++EGYG TE 
Sbjct: 884  RLYLRN--------KKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATET 935

Query: 63   VAPITLTI----QGDYVPEH------VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN 112
                ++ +      D+  +       VG P+   +V++VD    +       G + + G 
Sbjct: 936  SPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGP 995

Query: 113  NVFLGYFKDPELNS-----IDELGWHHTGDVG 139
             V  GY  DPE  +     ID +GW+ TGD G
Sbjct: 996  QVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKG 1027

Length = 1146

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 62.8 bits (153), Expect = 9e-12
 Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV----GPP 82
           LR  L   AP+ G ++   R ALG  ++  +G TE  A +TLT   D   E      G P
Sbjct: 314 LRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGA-VTLTKLDD-PDERASTTDGCP 371

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVG 139
           +    V++VD       A +  G + VRG + F GY K P+LN  D  GW  TGD+ 
Sbjct: 372 LPGVEVRVVDADGAPLPAGQ-IGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLA 427

Length = 547

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPICC 85
           LR  L G+APL   V        G  V+EGYG TE      +    G   P  VG  +  
Sbjct: 124 LRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPY 183

Query: 86  CSVKLVDV-----PEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTGDV 138
             V++  +        D    E  G + +RG NVF GY  +   N+   L  GW +TGD+
Sbjct: 184 TRVRVAKLDAGGALGRDCAPGE-VGVLAIRGPNVFPGYL-NDAHNAGARLEDGWLNTGDL 241

Query: 139 G 139
           G
Sbjct: 242 G 242

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 9   SIWDKLV--FKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE----- 61
           +IW  L+   +   +D+    R+++ GSA     +        G  VI  +G TE     
Sbjct: 262 TIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEE--RGVEVIHAWGMTETSPLG 319

Query: 62  CVAPITLTIQGDYVPEHV------GPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNN 113
            V+ +   +      E +      G P+    +++VD  E +    +GK  GE+ VRG  
Sbjct: 320 TVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVD-DEGNELPWDGKTVGELVVRGPW 378

Query: 114 VFLGYFKDPE-LNSIDELGWHHTGDVGMWLP 143
           V   Y+KDPE    +   GW  TGDV +   
Sbjct: 379 VTGSYYKDPEKTEELTRDGWFRTGDVAVIDE 409

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE-CVAPITLTIQGDYVPEHVGPPIC 84
           NLR +L G + +   ++   +   G  +   YG TE C    T T +  +    VG P+ 
Sbjct: 220 NLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLA 278

Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN-SIDELGWHHTGDVGMW 141
              +K+  V        EG GE+ V+G N+  GY    EL  + ++ GW +TGD+G  
Sbjct: 279 GREIKI-KVDNK-----EGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGEL 330

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV---GPP 82
           +L   L   AP+ G ++      LG L++  +G TE  A +T+T   D + +     G P
Sbjct: 311 SLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGA-VTVTEPDDALEKASTTDGRP 369

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDV 138
           +    VK++D         E  G + VRG + F GY K P LNS D  GW  TGD+
Sbjct: 370 LPGVEVKVIDANGAKLSQGE-TGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDL 424

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
           +R++L+G+APL   +    R  L   V+ +GYG TE    + + +     P  V    C 
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCG 359

Query: 86  CSV-----KLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE--LNSIDELGWHHTGDV 138
             V     K+VD            GE+C+RG  +  GY  DPE   N+ID+ GW HTGD+
Sbjct: 360 TVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDI 419

Query: 139 G 139
           G
Sbjct: 420 G 420

Length = 537

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 12/91 (13%)

Query: 57  YGQTECVAPITLTIQGDYVPEHV------GPPICCCSVKLVDVPEMDYFAHEGKGEVCVR 110
           YGQTE    IT   + D+ P+        G P     V L+D  +    A    GE+CVR
Sbjct: 313 YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVR 371

Query: 111 GNNVFLGYFKDPELNSIDEL---GWHHTGDV 138
           G  V  GY+  PE  +  E    GW HTGDV
Sbjct: 372 GPLVMDGYWNRPEETA--EAFRDGWLHTGDV 400

Length = 524

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 59.6 bits (144), Expect = 9e-11
 Identities = 47/125 (37%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 27  LRLMLAGSAPLAGNVLT-FLRCALGCLVIEGYGQTE--CVAPITLTIQGDYVPEH----- 78
           L+ ++  +APLA  +LT F     G  V E YG TE  C   ITLT  GD    H     
Sbjct: 305 LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSC---ITLT-HGDPEKGHGIAKK 360

Query: 79  --VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHH 134
             VG  +    VK +D            GE+CVR   V  GY+ + E     IDE GW H
Sbjct: 361 NSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420

Query: 135 TGDVG 139
           TGD+G
Sbjct: 421 TGDIG 425

Length = 546

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 56  GYGQTECVAPITLTIQGDYVP---EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN 112
            YG TE       T   D +    E VG       VK+VD P+         GE+C RG 
Sbjct: 349 AYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRGEIGELCTRGY 407

Query: 113 NVFLGYFKDPELN--SIDELGWHHTGDVG 139
           +V  GY+ +PE    SIDE GW HTGD+ 
Sbjct: 408 SVMKGYWNNPEATAESIDEDGWMHTGDLA 436

Length = 558

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 20/123 (16%)

Query: 25  GNLRLMLAGSAPLAGNVLTFLRCALG-------CLVIEGYGQTECVAPITLTIQGDYV-P 76
             LRL+    A L  +V   L+ AL          +  G G TE  AP    +       
Sbjct: 289 KRLRLLFYAGAALPQDVWDRLQ-ALAVRTTGERIPMTSGLGATE-TAPTATFVHWPTDRS 346

Query: 77  EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHH 134
             +G P     +KLV           GK EV V+G NV  GY++DPEL   + DE G++ 
Sbjct: 347 GVIGLPAPGTELKLVPN--------GGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYR 398

Query: 135 TGD 137
            GD
Sbjct: 399 IGD 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 56  GYGQTECVAPITLTIQGDYV-PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV 114
           G G TE  AP      G      ++G P   C VKLV V         GK EV V+G NV
Sbjct: 371 GLGMTET-APSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNV 421

Query: 115 FLGYFKDPELNS--IDELGWHHTGDVGMW 141
             GY++ PEL +   DE G++ +GD   +
Sbjct: 422 TPGYWRAPELTAEAFDEEGYYRSGDAVRF 450

Length = 614

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 21/135 (15%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV----GPP 82
           LR++  G APL+  +   +   LGC + + +G  E +   T   + D  P+ +    G P
Sbjct: 257 LRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAEGLVNYT---RLDDPPDVIMRTQGRP 313

Query: 83  ICCC-SVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHH 134
           I     +++VD     VP  +       GE+  RG     GY++ PE N  +  + G++ 
Sbjct: 314 ISPADEIRIVDDQGEPVPPGEV------GELLTRGPYTIRGYYRAPEHNARAFTDDGFYR 367

Query: 135 TGDVGMWLPTLFFFF 149
           TGD+       ++  
Sbjct: 368 TGDLVRIDADGYYRV 382

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 15  VFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY 74
           +  K+++ +  NL ++L G   L+  +   L   L     +GYG TE   PI +    D 
Sbjct: 451 ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDN 510

Query: 75  VPEHVGPPICCCSVKLVDVPEMDYFAHEG--KGEVCVRGNNVFLGYFKDPEL--NSIDEL 130
             E +G PI   + K        Y A +   KGE+ ++ +++F GYF + E   N+  E 
Sbjct: 511 NTESIGGPI-SPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTED 569

Query: 131 GWHHTGDV 138
           G+  TGD+
Sbjct: 570 GYFKTGDI 577

Length = 746

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
           ++RL ++GSAPL        +   G  ++E YG TE     +    G+     VG P+  
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPG 329

Query: 86  CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTGDVGMW 141
            S+++ D            G + V+G NVF GY++ PE  + +E    G+  TGD+G  
Sbjct: 330 VSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPE-KTAEEFRADGFFITGDLGKI 387

Length = 504

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           L+L L+G   L        +   GC + EGYG TE    +++          +G P+   
Sbjct: 328 LKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPST 387

Query: 87  SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGM 140
             K++D  + +       GE+CV+G  V  GY++ PE     +D  GW  TGD+ +
Sbjct: 388 LCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIAL 442

Length = 562

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPICC 85
           LR  L G+APL   V      A G  ++EGYG TE     ++    G+     VG  +  
Sbjct: 335 LRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPY 394

Query: 86  CSVKLVDVPEMDYFAHE----GKGEVCVRGNNVFLGYFKDPELNS---IDELGWHHTGDV 138
             V++V + +   +  +      G +C+ G NVF GY  +   N    +++ GW +TGD+
Sbjct: 395 QRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLWLED-GWLNTGDL 452

Query: 139 G 139
           G
Sbjct: 453 G 453

Length = 632

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT--IQGDYVPEHVGPPI 83
           ++R  ++GSAPL   V        G  ++EGYG TE  +P+T +  +    VP  +G P 
Sbjct: 324 SIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES-SPVTHSNFLWEKRVPGSIGVPW 382

Query: 84  CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP-ELNSIDELGWHHTGDVGMWL 142
                 ++ +   +       GE+ V+G  +  GY+  P E  ++ + GW HTGDVG   
Sbjct: 383 PDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMD 442

Query: 143 PTLFFF 148
              FF+
Sbjct: 443 EDGFFY 448

Length = 563

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 56  GYGQTECVAPITLTIQGDYVP---EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN 112
            YG TE     T T   D +      VG  +    VK+VD    +      +GE+C RG 
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGY 406

Query: 113 NVFLGYFKDPE--LNSIDELGWHHTGDVG 139
           +V  GY+ DPE    +ID  GW HTGD+ 
Sbjct: 407 SVMKGYWNDPEKTAEAIDADGWMHTGDLA 435

Length = 559

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTECVAPITLTIQGDYVPEHV---GP 81
           LR  L G   +   V    R     G  ++  YG TE   P  +    D +   +   G 
Sbjct: 304 LRFFLCGGTTIPKKVA---RECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGY 359

Query: 82  PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVG 139
                 +K+VD           +GE   RG NVF+GY  +PEL +  +DE GW+++GD+ 
Sbjct: 360 AAAGVEIKVVDEARKTLPPGC-EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLC 418

Length = 547

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 39/133 (29%), Positives = 51/133 (38%), Gaps = 18/133 (13%)

Query: 28  RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCS 87
            L     APL   +        G  ++EGYG TE   PI +       P   G P     
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPI-IAPGDPAPPGSCGRPRPGVE 255

Query: 88  VKLVD-----VPEMDYFAHEGKGEVCVRGNN---VFLGYFKDPELNSIDEL--GWHHTGD 137
           V++VD     VP          GE+ VR      +F GY+  PE  +      GW HTGD
Sbjct: 256 VRIVDEDGREVPP------GEVGELVVRPRRPWAMFKGYYGMPE-ATAKAWRNGWFHTGD 308

Query: 138 VGMWLPTLFFFFI 150
            G      F +F+
Sbjct: 309 RGRRDEDGFLYFV 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPIC 84
           +L+L + G   +   V        G  ++EGYG TEC   +++     DY    +G P+ 
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVP 385

Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTGDVGMW 141
              +KLVD  + +       GE+ V+G  V LGY++ PE  + DE+   GW  TGD+ + 
Sbjct: 386 STEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPE--ATDEVIKDGWLATGDIAVM 442

Query: 142 LPTLFFFFI 150
               F   +
Sbjct: 443 DEEGFLRIV 451

Length = 560

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 50  GCLVIEGYGQTECVAPITL--TIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGK-GE 106
           G L++EGYG TE  +PI +   +  D  P +VG P     V++VD  + D    +G+ GE
Sbjct: 361 GGLLVEGYGLTET-SPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGE 419

Query: 107 VCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVG 139
           + VRG  VF GY+  PE  +     GW  TGDV 
Sbjct: 420 LLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVV 453

Length = 573

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 19/139 (13%)

Query: 27  LRLM-LAGSAPLAGNVLTFLRCALGCLVIEGYGQTEC-----VAPITLTIQGDYVPEHVG 80
           LRL+ L G A     V  +     G  +I  YG TE         +         P  +G
Sbjct: 237 LRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIG 296

Query: 81  PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN----------SIDEL 130
            P+    + ++D  ++        GE+ + G  V  GY   PEL             D  
Sbjct: 297 RPLANTRLYVLD-DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGA 355

Query: 131 GWHHTGDVGMWLP--TLFF 147
             + TGD+  +LP   L F
Sbjct: 356 RLYRTGDLVRYLPDGNLEF 374

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPI-TLTIQGDYVPEHVGPPICC 85
           LR + +G   L   +L + R  LG  V E YGQTE    +      G   P  +G P+  
Sbjct: 209 LRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPG 268

Query: 86  CSVKLVDVPEMDYFAHEGKGEVCVRGNN--VFLGYFKDPELNSIDELG-WHHTGDVG 139
             V +VD            GE+ V+  +  +FLGY+ +PE  +    G W  TGD+G
Sbjct: 269 HEVAVVD-DAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLG 324

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 50  GCLVIEGYGQTECVAPITLTIQGDYVP-EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVC 108
           GC ++EGYG TE     +    G+      VG P+   ++K++D    +    E +GE+C
Sbjct: 358 GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGE-RGELC 416

Query: 109 VRGNNVFLGYFKDPELNS--IDELGWHHTGDV 138
           ++G  V  GY++ PE  +  +D  GW  TGD+
Sbjct: 417 IKGPQVMKGYWQQPEATAEALDAEGWFKTGDI 448

Length = 562

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 13/68 (19%)

Query: 79  VGPPICCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE--LNSIDELG 131
           VG PI  C +++VD     +P+         G + ++G+NV  GY+ +PE    SI   G
Sbjct: 316 VGSPIDGCEIRIVDDAGEVLPDRTI------GHIQIKGDNVTSGYYNNPEATKKSITPDG 369

Query: 132 WHHTGDVG 139
           W  TGD+G
Sbjct: 370 WLKTGDLG 377

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 27   LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH-----VG- 80
            LR + AG+  +            G  ++EGYG TE  AP+ + +     P H     VG 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTET-APV-IALN---TPMHNKAGTVGR 963

Query: 81   --PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTG 136
              P I     +L  VP +D    EG G + VRG NV LGY +      ++    GW+ TG
Sbjct: 964  LLPGI---EYRLEPVPGID----EG-GRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTG 1015

Query: 137  DV 138
            D+
Sbjct: 1016 DI 1017

Length = 1140

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 17/114 (14%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           LR +  G A ++ ++L   R ALG  V EGYG +EC + ++L   G   P  VG P+   
Sbjct: 239 LRFVAVGGARVSPSLLQRAR-ALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHV 297

Query: 87  SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGM 140
            V           A++  GE+ VRG ++ LGY  +P     D+  W  TGD+G 
Sbjct: 298 QVS---------IAND--GEILVRG-SLMLGYLGEPPAT--DD--WWATGDLGH 335

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 44/126 (34%), Positives = 57/126 (45%), Gaps = 24/126 (19%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGC-------LVIEGYGQTECVAPITLTIQGDYVPEH 78
           NLRLM  G A L+ ++   ++ AL             GYG TE  AP T      +  E 
Sbjct: 347 NLRLMAYGGATLSDDLYERMQ-ALAVRTTGHRIPFYTGYGATE-TAPTTTGTH--WDTER 402

Query: 79  VGP---PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWH 133
           VG    P+    +KL  V +        K EV V+G NV  GY KDPEL   + DE G++
Sbjct: 403 VGLIGLPLPGVELKLAPVGD--------KYEVRVKGPNVTPGYHKDPELTAAAFDEEGFY 454

Query: 134 HTGDVG 139
             GD  
Sbjct: 455 RLGDAA 460

Length = 624

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 18/135 (13%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE-----CVAPITLTIQGDYVPEH-- 78
           +L++ L G   +  +V    +   G  ++E YG TE     C+ P+TL        E+  
Sbjct: 330 SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTL-------KEYNG 382

Query: 79  -VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHT 135
            +G PI      + D       A    GE+C++G  V  GY+K PE  +  +D  GW HT
Sbjct: 383 SIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHT 441

Query: 136 GDVGMWLPTLFFFFI 150
           GD+       F + +
Sbjct: 442 GDIARMDEQGFVYIV 456

Length = 560

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 20/136 (14%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           LR +++   PL   V+ + R A G  + +GYGQTE    +      +  P  +G P    
Sbjct: 199 LRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGY 258

Query: 87  SVKLVDVPEMDYFAHEGK-------GEVCV----RGNNVFLGYFKDPELNSIDELG-WHH 134
            V ++D         EG        G++ V    R   +F GY KDPE       G W+ 
Sbjct: 259 RVAIID--------DEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYL 310

Query: 135 TGDVGMWLPTLFFFFI 150
           TGD  +     +F+F+
Sbjct: 311 TGDRAIKDEDGYFWFV 326

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 24/126 (19%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPI-TLTIQGDYVPEH----- 78
           + R ML G  P    +L   +C   G  V + YG TE  + I TL+      PE      
Sbjct: 255 SFRCMLLGGGPAPKPLLE--QCKEKGIPVYQSYGMTETASQIVTLS------PEDALTKL 306

Query: 79  --VGPPICCCSVKLV-DVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWH 133
              G P+  C +K+  D   +  F     GE+ V+G NV  GY    +    +  + GW 
Sbjct: 307 GSAGKPLFPCELKIEKDGVVVPPFEE---GEIVVKGPNVTKGYLNREDATRETFQD-GWF 362

Query: 134 HTGDVG 139
            TGD+G
Sbjct: 363 KTGDIG 368

Length = 483

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 48.6 bits (117), Expect = 5e-07
 Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 28/136 (20%)

Query: 28  RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITL------TIQGDYVPEHVGP 81
            +++ G A  A  V  +     G  ++  YG TE    +T        + G  VP  +G 
Sbjct: 212 LVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVP--IGR 269

Query: 82  PICCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL-------NSIDE 129
           PI    V ++D     VP          GE+ + G  V  GY   PEL       +    
Sbjct: 270 PIANTRVYVLDEDLRPVPVG------VPGELYIGGAGVARGYLNRPELTAERFVPDPFGG 323

Query: 130 LG--WHHTGDVGMWLP 143
            G   + TGD+  WLP
Sbjct: 324 PGERLYRTGDLARWLP 339

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 55  EGYGQTECVAPITLTIQGDYV--PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN 112
           +G+G TE    + +  + D       +G P+  C  +L+D    +       GE+ +RG 
Sbjct: 293 QGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNKVEVGEVGELLIRGP 351

Query: 113 NVFLGYFKDPEL--NSIDELGWHHTGDV 138
           NV   Y+  P+    +I + GW  TGD+
Sbjct: 352 NVMKEYWNRPDATEETIQD-GWLCTGDL 378

Length = 496

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)

Query: 25  GNLRLMLAGSAP-LAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP- 82
            +L  +  G AP  A ++L +L    G  +++G+G +E      +++  D +    G   
Sbjct: 252 RHLTALFTGGAPHAAEDILGWL--DDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAG 309

Query: 83  ICCCSV--KLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPE--LNSIDELGWHHTGDV 138
           I   +V  ++VD    D  A    GE+ +RG N+  GY++ P+    +    GW  TGD+
Sbjct: 310 IPTPTVQTRVVDDQGNDCPAGV-PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDI 368

Length = 488

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPP 82
           LR++  G+AP +  +L  +        ++  +GQTE ++P+T  + G+        VG  
Sbjct: 292 LRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTE-MSPVTCMLLGEDAIRKLGSVGKV 350

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTGDV 138
           I   + ++VD   M+       GE+  R   +  GY+ +PE  + +    GW H+GD+
Sbjct: 351 IPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATA-EAFAGGWFHSGDL 406

Length = 542

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 13/68 (19%)

Query: 79  VGPPICCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELG 131
           +G PI   ++++VD     +PE         G + VRG  V  GY+++PE N  +  E G
Sbjct: 376 LGRPIPGVAIRIVDEDGALLPE------GEVGRLQVRGPTVTSGYYRNPEANAEAFTEDG 429

Query: 132 WHHTGDVG 139
           W  TGD+G
Sbjct: 430 WFRTGDLG 437

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 12/141 (8%)

Query: 19  VQEDMGG-NLRLMLAGSA--PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYV 75
           +Q+D+   ++RL  A SA  PL   V+  ++ A G  + +GYGQTE  A I  +      
Sbjct: 190 IQQDLAQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVK 249

Query: 76  PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCV----RGNNVFLGYFKDPELNSIDEL- 130
           P  +G P+    V L+D    +    E  GE+ +    R   + LGY  DPE  +     
Sbjct: 250 PGSMGRPLPGYRVVLLDDEGKEIPVTE--GEIALDLGDRPIGLMLGYMGDPE-KTAAAFR 306

Query: 131 -GWHHTGDVGMWLPTLFFFFI 150
            G++ TGD        + +F+
Sbjct: 307 GGYYRTGDKAYRDEDGYLWFV 327

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 5/38 (13%)

Query: 105 GEVCVRGNNVFLGYFKDPELNS---IDELGWHHTGDVG 139
           GE+CV G  VF GY+ +PE N+    D  GW  TGD+G
Sbjct: 367 GEICVIGPAVFAGYYNNPEANAKAFRD--GWFRTGDLG 402

Length = 528

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 25  GNLRLMLAG----SAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG 80
             LR +L+G       L   +L     AL   ++  YG TE    +              
Sbjct: 485 ERLRQLLSGGEALPLALVQRLLQ--LAALARRLLNLYGPTEAT--LDAPSFPISAELESR 540

Query: 81  PPICCCSVKLVDVPEMDYFAHEGK----GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
            PI    V    +  +D           GE+ + G  + LGY   P+L +     L  + 
Sbjct: 541 VPIGRP-VANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYR 599

Query: 135 TGDVGMWLP 143
           TGD+   L 
Sbjct: 600 TGDLARPLA 608

Length = 642

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 5/42 (11%)

Query: 105 GEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTGDVGMWLP 143
           GE+  RGN V  GY K+P+  + +E    GW HTGD+ +  P
Sbjct: 389 GEIMFRGNIVMKGYLKNPK--ATEEAFAGGWFHTGDLAVLHP 428

Length = 545

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 17/130 (13%)

Query: 29  LMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTI---QGDYVPEHVGPPICC 85
           +M AG+AP     + F     G  V   YG +E   P T+     + D +P      +  
Sbjct: 315 VMTAGAAPPP--SVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNA 372

Query: 86  CS---------VKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELNSID-ELGWH 133
                      + +VD   M     +GK  GE+ +RGN V  GY K+P+ N      GW 
Sbjct: 373 RQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWF 432

Query: 134 HTGDVGMWLP 143
           H+GD+G+  P
Sbjct: 433 HSGDLGVKHP 442

Length = 567

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 25  GNLRLMLAGSAPLAGNVLT-FLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH--VGP 81
            +L+ +  G+APL+G  +  F++       I+GYG TE  A  T     + + ++  VG 
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGL 378

Query: 82  PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDV 138
                  K+VD            GE+ ++G  V  GY  +P+    +ID+ GW  TGD+
Sbjct: 379 LAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDI 437

Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 54  IEGYGQTECVAPITLTIQGDYVPE--HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG 111
           I+ YG TE  +  TL   G  + +    G  +    +++ D     +     KGE+C+RG
Sbjct: 294 IDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRG 352

Query: 112 NNVFLGYFKDPELNSIDELG-WHHTGDVG 139
             V  GY+KDPE  +    G W  +GDVG
Sbjct: 353 PKVTKGYWKDPEKTAEAFYGDWFRSGDVG 381

Length = 497

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 46  RCALGCLVIEG-YGQTEC--VAPITLTIQGD-----YVPEHVGPPICCCSVKLVDVPEMD 97
           R   G ++ E  +G TE       T   Q D       P  VG P+     K+ D    +
Sbjct: 348 RALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGE 407

Query: 98  YFAHEGKGEVCVRGNNVFLGYFKDPELNSIDEL--GWHHTGDVGM 140
                 +GE+ VR  ++  GY+  PE  + + L  GW HTGD+G 
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATA-EALRDGWLHTGDIGK 451

Length = 567

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 14/150 (9%)

Query: 25  GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP--- 81
             LR+  +   PL   V+ + +  LG  + + YGQTE   P+             G    
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVG-NHHALAHEVRAGSMGL 263

Query: 82  PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNN----VFLGYFKDPELNSIDELG-WHHTG 136
           P+    + ++D  +    A    G++ +   +     F GY+ DPE  +    G W+ TG
Sbjct: 264 PLPGYRIAVLD-DDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTG 322

Query: 137 DVGMWLPTLFFFFIPM---LVIMLMYTRIG 163
           D+       +F+FI     ++I   Y RIG
Sbjct: 323 DLVERDEDGYFWFIGRADDVIISAGY-RIG 351

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLT-IQGDYVPEHVGPPICC 85
           LR + + SAPL       L+      V+  +G TE    +T T I+G    E+  P +  
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTEN--PVVST 354

Query: 86  CSVKLVDVPEMDYFAHEGK-------GEVCVRGNNVFLGYFKDPEL---NSIDELGWHHT 135
             V      ++     +G        GEV +RG  V  GY  DP +   N  D  GW  T
Sbjct: 355 GLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTD--GWLRT 412

Query: 136 GDVG 139
           GD+G
Sbjct: 413 GDLG 416

Length = 534

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 25  GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEH--- 78
           G + ++  GS P A  V    R  LG  V+  YG TE   P+      D    +PE+   
Sbjct: 301 GPVHVLTGGSPPPAALVKKVQR--LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 79  ---VGPPICCCSVKLVDVPE---MDYFAHEGK--GEVCVRGNNVFLGYFKDPELNS-IDE 129
                  +    +  VDV      +    +GK  GE+ ++G+++  GY K+P+  S   +
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK 418

Query: 130 LGWHHTGDVGMWLP 143
            GW +TGDVG+  P
Sbjct: 419 HGWLNTGDVGVIHP 432

Length = 579

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 20/125 (16%)

Query: 27  LRLMLAGSA--PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
             L + GSA  PL      +   ALG  +++ YGQTE                  G P+ 
Sbjct: 290 SSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLP 348

Query: 85  CCSVKLVD-----VPEMDYFAHEGKGEVCVRGNN--VFLGYFKDPE--LNSIDELGWHHT 135
             +V+ VD     VP        G GE+ VR     + L Y+ DPE    +     W+ T
Sbjct: 349 GYAVRRVDDEGNPVP-------PGVGELVVRLPWPGMALTYWNDPERYKEAYFG-RWYRT 400

Query: 136 GDVGM 140
           GD   
Sbjct: 401 GDWAE 405

Length = 528

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 36  PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPE 95
           PL   V    +   G  ++EG+GQTE    I      +  P  +G P     + ++D   
Sbjct: 312 PLNPEVFNTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIID--- 368

Query: 96  MDYFAHEGK-------GEVCVRGNN-----VFLGYFKDPELN-SIDELGWHHTGDV 138
                 +GK       GE+ +R ++     +F+GY++DPE    +   G++HTGD 
Sbjct: 369 -----PDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDT 419

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 22/138 (15%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           LR++  G+    G++  F R   GC+V++G+G TE    IT T   D  P  +GP     
Sbjct: 269 LRIVY-GNEGAPGDIARFAR-RFGCVVVDGFGSTEGGVAITRT--PDTPPGALGPLP--P 322

Query: 87  SVKLVDV------------PEMDYFAHEGKGE-VCVRGNNVFLGYFKDPELNSIDEL--G 131
            V +VD                   A E  GE V   G   F GY+ DPE ++ + +  G
Sbjct: 323 GVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADA-ERMRGG 381

Query: 132 WHHTGDVGMWLPTLFFFF 149
            + +GD+       + +F
Sbjct: 382 VYWSGDLAYRDADGYAYF 399

Length = 529

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 43/148 (29%), Positives = 57/148 (38%), Gaps = 36/148 (24%)

Query: 20  QEDMGGNLRLMLAG----SAPLAGNVLTFLRCALGCLVIEGYGQTE-----CVAPIT-LT 69
             +    LR +L G    S      VL       G  +I GYG TE         IT L 
Sbjct: 235 DPEALAGLRQLLVGGDVLSPAHVRRVL---AACPGLRLINGYGPTENTTFSTCHVITRLD 291

Query: 70  IQGDYVPEHVGPPICCCSVKLVD-----VPEMDYFAHEG-KGEVCVRGNNVFLGYFKDPE 123
              D +P  +G PI   +V ++D     VP        G  GE+ V G+ + LGY   PE
Sbjct: 292 EAADSIP--IGRPIPNTTVYILDEEGQPVPI-------GVPGELYVGGDGLALGYLNRPE 342

Query: 124 LNS------IDELG--WHHTGDVGMWLP 143
           L +          G   + TGD+  W P
Sbjct: 343 LTAERFVPDPFGPGERLYRTGDLARWRP 370

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 55  EGYGQTECVAPITLTIQGDYVPEH---VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG 111
           +GYG TEC +P+ +TI     P+H   VG PI    V +V        +    G V  RG
Sbjct: 330 QGYGTTEC-SPV-ITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRG 387

Query: 112 NNVFLGYFKDPELNSIDELG---WHHTGDVG 139
            ++F GY  +       ELG   W+ TGD+G
Sbjct: 388 TSLFSGYLGEDFGQGFVELGGETWYVTGDLG 418

Length = 539

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 27/129 (20%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP---- 82
           LR +  G A +   V   L+   G   +EGYG TE +A             H  PP    
Sbjct: 307 LRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQT-----------HSNPPDRPK 355

Query: 83  ICCCSVKLVDV------PEM-DYFAHEGKGEVCVRGNNVFLGYFKDPELNS-----IDEL 130
           + C  +    V      PE  +       GE+ V G  VF GY+  PE  +     ID  
Sbjct: 356 LQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGK 415

Query: 131 GWHHTGDVG 139
            +  TGD+G
Sbjct: 416 RFFRTGDLG 424

Length = 546

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 17/88 (19%)

Query: 56  GYGQTECVAPITLTI-QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV 114
           GYG TE     T+   + D +   VG P+    VKLVD            GE+ +RG ++
Sbjct: 270 GYGLTE--MASTVCAKRADGLAG-VGSPLPGREVKLVD------------GEIWLRGASL 314

Query: 115 FLGYFKDPELNSI-DELGWHHTGDVGMW 141
            LGY++  +L  + ++ GW  T D G W
Sbjct: 315 ALGYWRQGQLVPLVNDEGWFATRDRGEW 342

Length = 458

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 105 GEVCVRGNNVFLGYFKDPELN--------SIDELGWHHTGDVG 139
           GE+ VRG +V  GY+  PE          + DE GW  TGD+G
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 38/146 (26%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTECVAPITLTIQGDYVPEH----- 78
           +LR +++  AP+   V+   R  L     ++  YG TE + PI+ +I+     E      
Sbjct: 289 SLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEAL-PIS-SIESR---EILFATR 343

Query: 79  ----------VGPPICCCSVKLVDVPEMDYFAH--------EGK-GEVCVRGNNVFLGYF 119
                     VG P+    V+++ + +               G+ GE+ V G  V   Y+
Sbjct: 344 AATDNGAGICVGRPVDGVEVRIIAISD-APIPEWDDALRLATGEIGEIVVAGPMVTRSYY 402

Query: 120 KDPE---LNSI-DELG--WHHTGDVG 139
             PE   L  I D  G  WH  GD+G
Sbjct: 403 NRPEATRLAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 105 GEVCVRG---NNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFI 150
           GE+C++G     +F  Y+ DP+  +  ++  GW HTGD G      FF+F+
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFV 417

Length = 517

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 105 GEVCVRGNNVFLGYFKDPELNS----IDELG--WHHTGDVGMWLP 143
           GE+ + G  V LGY+ DPEL +        G   + TGD+G + P
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRP 371

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 19/146 (13%)

Query: 19  VQEDMGG----NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE----CVAPITLTI 70
           VQ+D+      +LR  + G  PL   VL   +   G  + EGYGQTE    C     + I
Sbjct: 281 VQQDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANFKGMKI 340

Query: 71  QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNV-----FLGYFKDPELN 125
           +    P  +G       V+++D    +      +G++ +R         F  Y  +PE  
Sbjct: 341 K----PGSMGKASPPYDVQIIDD-NGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKT 395

Query: 126 SIDELG-WHHTGDVGMWLPTLFFFFI 150
           +    G ++ TGD G+     +F+F+
Sbjct: 396 AATIRGDFYITGDRGIMDEDGYFWFV 421

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 16/92 (17%)

Query: 57  YGQTECVAPITLTIQGDYVPEHV------GPPICCCSVKLVDVPEMDYFAHEGKGEVCVR 110
           YGQTE +AP+   +  +   EH+      G P+     ++VD  + +  A    GE+  R
Sbjct: 319 YGQTE-IAPLATVLGPE---EHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHR 373

Query: 111 GNNVFLGYFKDPELNSIDEL---GWHHTGDVG 139
              + LGY+ DPE  +  E    GW H+GD+G
Sbjct: 374 SPQLMLGYWDDPEKTA--EAFRGGWFHSGDLG 403

Length = 523

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           LR ++AG+  L  +     +   G  ++EGYG TEC   +++ +     P  VG  +   
Sbjct: 481 LRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGM 540

Query: 87  SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFK--DP---------ELNSIDELGWHHT 135
             +L+ VP +     +G G + ++G N+  GY +   P               E GW+ T
Sbjct: 541 DARLLSVPGI----EQG-GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDT 595

Query: 136 GDV 138
           GD+
Sbjct: 596 GDI 598

Length = 718

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 19/108 (17%)

Query: 51  CLVIEGYGQTECVAPITLTIQGDYVPEH---VGPPICCCSVKLVDVPEMDYFAHEG-KGE 106
             ++  YG TE    +T T      P     +G P+   +  ++D P+++     G  GE
Sbjct: 232 RRLLNTYGPTEAT--VTATA-SRLTPGKPVNIGRPLPNYTCWVLD-PDLEPLVPIGAVGE 287

Query: 107 VCVRGNNVFLGYFKDPELNS----IDELGW-------HHTGDVGMWLP 143
           +C+ G  V  GY   PEL +     D           + TGD+  +L 
Sbjct: 288 LCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLE 335

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 12/67 (17%)

Query: 79  VGPPICCCSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFK-DPELNSIDELGW 132
           +GPP+    V++VD     +P        G G + +RG +V  GY   D  + + D  GW
Sbjct: 362 LGPPLPGLEVRVVDEDGQVLPP------RGVGVIELRGESVTPGYLTMDGFIPAQDADGW 415

Query: 133 HHTGDVG 139
             TGD+G
Sbjct: 416 LDTGDLG 422

Length = 545

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML 199
           TL  F +P+LVI++ YT I   +R R+R    +          + S   +   +ML
Sbjct: 148 TLLGFVLPLLVILVCYTLILRTLRKRARSGASQAR------AKRSSSKERKAAKML 197

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 17/95 (17%)

Query: 57  YGQTECVA-----PITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG 111
           YG TE        P  L  +    P+ +G  I    + +VD  + +  A    GE+  RG
Sbjct: 150 YGLTEAFRSTYLPPEELDRR----PDSIGKAIPNVELWVVD-EDGNRCAPGEVGELVHRG 204

Query: 112 NNVFLGYFKDPE-----LNSIDELG--WHHTGDVG 139
            NV  GY+ DPE     L      G    +TGD+ 
Sbjct: 205 ANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLV 239

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 57  YGQTE-CVA----PITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG 111
           YG TE  VA     IT  +   Y    +G       + ++D  E        +GE+ + G
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISG 351

Query: 112 NNVFLGYFKDPEL-----NSIDELGWHHTGDVG 139
            +V  GY  +PE       + D    +HTGD G
Sbjct: 352 PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAG 384

Length = 503

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 13/84 (15%)

Query: 88  VKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL--NSIDELGWHHTGDVGMWLPTL 145
           V+  D  +         GE+ +R  ++  GY  +P+    ++ + G+  TGD+G      
Sbjct: 361 VRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Query: 146 FFFFIPMLVIMLMYTRIG--LRIR 167
            F +          TR+G  LR+ 
Sbjct: 421 QFVYQ---------TRMGDSLRLG 435

Length = 540

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 21/126 (16%)

Query: 28  RLMLAGSA-PLAGNVLTFLRCALGCLVIEGYGQTECVAPI----TLTIQGDYVP------ 76
           R ++ GSA P A  ++       G  VI  +G TE ++P+     L  +   +P      
Sbjct: 297 RTVIGGSACPPA--MIRTFEDEYGVEVIHAWGMTE-MSPLGTLCKLKWKHSQLPLDEQRK 353

Query: 77  --EHVGPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELNSIDELGW 132
             E  G  I    +K+V   +      +GK  G++ VRG  V   YF+      +D  GW
Sbjct: 354 LLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLVD--GW 410

Query: 133 HHTGDV 138
             TGDV
Sbjct: 411 FPTGDV 416

Length = 539

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 100 AHEGKGEVCVRGNNVFLGYFKDPELNSIDEL---GWHHTGDVG 139
                G +CVRG ++  GYF+D E  S D L   GW  TGD+G
Sbjct: 407 PERVVGHICVRGPSLMSGYFRDEE--SQDVLAADGWLDTGDLG 447

Length = 579

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 21/134 (15%)

Query: 25  GNLRL-MLAGSAPLAGNVLTFLRCALGCLVIEGYGQTE-----CVAPITLTIQGDYVPEH 78
           G   L  L G   L  ++   L  + G  +   YG TE       A +         P  
Sbjct: 205 GRESLTALCGGEALPRDLAERL-LSTGAELWNMYGPTETTIWSTCARV----TAADGPVT 259

Query: 79  VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL-------NSIDELG 131
           +G PI    V ++D  ++        GE+ + G+ V  GY   PEL       +  D+ G
Sbjct: 260 IGRPIANTQVYVLD-EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPG 318

Query: 132 --WHHTGDVGMWLP 143
              + TGD+  W P
Sbjct: 319 GRLYRTGDLVRWRP 332

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG1176|consensus	537		100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02654	666	acetate-CoA ligase	100.0
KOG1177|consensus	596		100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1256|consensus	691		100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.98
PRK07514	504	malonyl-CoA synthase; Validated	99.98
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.98
PLN02246	537	4-coumarate--CoA ligase	99.98
PRK06839	496	acyl-CoA synthetase; Validated	99.98
PRK07638	487	acyl-CoA synthetase; Validated	99.98
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.98
PRK09088	488	acyl-CoA synthetase; Validated	99.97
PLN02330	546	4-coumarate--CoA ligase-like 1	99.97
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.97
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.97
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.97
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK05857	540	acyl-CoA synthetase; Validated	99.97
PRK05852	534	acyl-CoA synthetase; Validated	99.97
PRK08315	559	AMP-binding domain protein; Validated	99.97
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.97
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.97
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.97
PRK06145	497	acyl-CoA synthetase; Validated	99.97
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07470	528	acyl-CoA synthetase; Validated	99.97
PRK13390	501	acyl-CoA synthetase; Provisional	99.97
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.97
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.97
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.97
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.97
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.97
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.97
KOG1175|consensus	626		99.97
PRK13383	516	acyl-CoA synthetase; Provisional	99.97
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.97
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.97
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.97
PRK12582	624	acyl-CoA synthetase; Provisional	99.97
PRK12467	3956	peptide synthase; Provisional	99.97
PRK06188	524	acyl-CoA synthetase; Validated	99.97
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK12583	558	acyl-CoA synthetase; Provisional	99.97
PRK12316	5163	peptide synthase; Provisional	99.97
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK06164	540	acyl-CoA synthetase; Validated	99.97
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.97
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.97
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.97
PRK08316	523	acyl-CoA synthetase; Validated	99.97
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.97
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.97
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK12467	3956	peptide synthase; Provisional	99.97
PRK13391	511	acyl-CoA synthetase; Provisional	99.97
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.97
PRK12316	5163	peptide synthase; Provisional	99.97
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.96
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK05691	4334	peptide synthase; Validated	99.96
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.96
PLN02479	567	acetate-CoA ligase	99.96
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK05691	4334	peptide synthase; Validated	99.96
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.96
PRK07867	529	acyl-CoA synthetase; Validated	99.96
PLN03102	579	acyl-activating enzyme; Provisional	99.96
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.96
KOG1180|consensus	678		99.96
PRK09192	579	acyl-CoA synthetase; Validated	99.96
PRK06178	567	acyl-CoA synthetase; Validated	99.96
PLN03052	728	acetate--CoA ligase; Provisional	99.96
PRK05850	578	acyl-CoA synthetase; Validated	99.95
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.95
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK13388	540	acyl-CoA synthetase; Provisional	99.95
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.95
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.95
PRK08162	545	acyl-CoA synthetase; Validated	99.95
PRK07868	994	acyl-CoA synthetase; Validated	99.95
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.93
PRK07798	533	acyl-CoA synthetase; Validated	99.93
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.91
PRK08308	414	acyl-CoA synthetase; Validated	99.91
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.84
KOG1179|consensus	649		99.84
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.82
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.8
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.79
PTZ00297	1452	pantothenate kinase; Provisional	99.35
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.34
PRK09188	365	serine/threonine protein kinase; Provisional	99.04
KOG1178|consensus	1032		98.63
KOG3628|consensus	1363		98.41
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.19
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.48
PLN02620	612	indole-3-acetic acid-amido synthetase	96.79
PLN02247	606	indole-3-acetic acid-amido synthetase	96.68
PLN02249	597	indole-3-acetic acid-amido synthetase	96.26
KOG3628|consensus	1363		95.8

>KOG1176|consensus

Probab=100.00  E-value=6.3e-41  Score=282.32  Aligned_cols=181  Identities=28%  Similarity=0.419  Sum_probs=165.5

Q ss_pred             ccccchhHHHHHHHhh-hhhccCCceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecccCC-ccCCCC
Q psy14311          3 GIYRRNSIWDKLVFKK-VQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQGD-YVPEHV   79 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~-~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~   79 (199)
                      .+.++|+++..|++.+ ....+++++|.+.++|+++++++.++++++++ ..+.+.||+||+++.++.+...+ .+++++
T Consensus       276 ~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~sv  355 (537)
T KOG1176|consen  276 HLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSV  355 (537)
T ss_pred             EEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCccccc
Confidence            5679999999999886 44577799999999999999999999999998 88999999999997777665544 488999


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      |+++++++..+.+ ++|+.+++++.||||++|+.++.||++||++|.  ++.+|||+|||+|++|+||+|+|+       
T Consensus       356 G~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~Iv-------  427 (537)
T KOG1176|consen  356 GRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIV-------  427 (537)
T ss_pred             CccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEe-------
Confidence            9999988888888 999999999999999999999999999999998  555699999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                        +|.+|+||.+|++|+|.|||++|.+||+|.++..
T Consensus       428 --dR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaV  461 (537)
T KOG1176|consen  428 --DRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAV  461 (537)
T ss_pred             --cchhhheeeCCEEeCHHHHHHHHHhCCCccEEEE
Confidence              9999999999999999999999999999997643

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.3e-38  Score=265.85  Aligned_cols=179  Identities=20%  Similarity=0.213  Sum_probs=159.3

Q ss_pred             CccccchhHHHHHHHhh-hhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKK-VQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG   80 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~-~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G   80 (199)
                      +.|+.+|+.+++|.+.. ....+++|||.+.+.|||+++++++++.+.+|++|.+.||+||++.+...... +.++++.|
T Consensus       266 t~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g  344 (528)
T COG0365         266 TIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSG  344 (528)
T ss_pred             ceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCC
Confidence            46789999999999776 56677899999999999999999999999999999999999999965554444 44556669


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecC--cccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN--NVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIM  156 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~--~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~  156 (199)
                      +|+||+++.++| ++|+++++|+ |+|+++.|  +++++||++|+++.  +... ||.|||.+++|+||++||+      
T Consensus       345 ~p~pG~~~~vvd-d~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~------  415 (528)
T COG0365         345 LPLPGYAVRRVD-DEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLH------  415 (528)
T ss_pred             CCCCCceeEEEC-CCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEE------
Confidence            999999999999 4599999999 99999976  89999999998877  2223 9999999999999999999      


Q ss_pred             eEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                         ||.||+||+.|.+++|.|||++|.+||+|+++..
T Consensus       416 ---GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAv  449 (528)
T COG0365         416 ---GRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAV  449 (528)
T ss_pred             ---eeccceEeccCeeccHHHHHHHHHhCcceeeeEE
Confidence               9999999999999999999999999999997654

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.6e-36  Score=259.30  Aligned_cols=181  Identities=28%  Similarity=0.448  Sum_probs=158.3

Q ss_pred             CccccchhHHHHHHHhhhhhc-cCCc-eeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecccCC--ccC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQED-MGGN-LRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQGD--YVP   76 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~-~~~s-lr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~~--~~~   76 (199)
                      +.++++|+++..|+....... ...+ +|.+++||+++++++++.|+++|+ ..+.+.||+||+++.++......  ...
T Consensus       266 t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~  345 (534)
T COG0318         266 TVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKP  345 (534)
T ss_pred             eEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcC
Confidence            467899999999886654443 3344 999999999999999999999997 57999999999998777665554  466


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeee
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLV  154 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~  154 (199)
                      +++|+|+|+++++|+|+++++++| |+.|||+++||+++.|||++|+.+.  +..+|||+|||++++|++|+++|.    
T Consensus       346 ~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~----  420 (534)
T COG0318         346 GSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIV----  420 (534)
T ss_pred             CcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEE----
Confidence            788999999999999966666666 8899999999999999999999987  333599999999999999999999    


Q ss_pred             eeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        155 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       155 ~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                           ||.+|+|+++|++|+|.|||.++.+||.|.+..
T Consensus       421 -----gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aa  453 (534)
T COG0318         421 -----GRLKDLIISGGENIYPEEIEAVLAEHPAVAEAA  453 (534)
T ss_pred             -----eccceEEEeCCeEECHHHHHHHHHhCCCcceEE
Confidence                 999999999999999999999999999888653

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-36  Score=264.38  Aligned_cols=158  Identities=23%  Similarity=0.286  Sum_probs=142.1

Q ss_pred             CceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccc-cCcEEEEEeCCCCcccCCCC
Q psy14311         25 GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPI-CCCSVKLVDVPEMDYFAHEG  103 (199)
Q Consensus        25 ~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~-~~~~~~v~d~~~~~~~~~g~  103 (199)
                      .+||.+++||+|+++++.++|++.+|+.+++.||+||+++.++........++++|+|+ |+++++++|+++......+.
T Consensus       461 ~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~  540 (746)
T PTZ00342        461 PNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLP  540 (746)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCCCC
Confidence            68999999999999999999999889999999999999886666555555678999998 99999999866555555556


Q ss_pred             cceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEE-ecceecccccccc
Q psy14311        104 KGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIR-SRSRHSLGKRVEG  180 (199)
Q Consensus       104 ~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~-~~g~~v~~~eiE~  180 (199)
                      .|||+++||+++.|||++|+.|.  ++.+|||+|||+|++|++|+|+|+         ||.+|+|+ .+|++|+|.+||+
T Consensus       541 ~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~---------gR~kdlIkls~Ge~I~p~eIE~  611 (746)
T PTZ00342        541 KGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFL---------DRSKGLVKLSQGEYIETDMLNN  611 (746)
T ss_pred             ceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEE---------ccCCCeEEeCCCEEEchHHHHH
Confidence            79999999999999999999988  567999999999999999999999         99999999 5799999999999


Q ss_pred             cccCCcccccc
Q psy14311        181 TVHGETKRSQS  191 (199)
Q Consensus       181 ~l~~~~~~~~~  191 (199)
                      +|.+||.|.++
T Consensus       612 ~l~~~p~V~~~  622 (746)
T PTZ00342        612 LYSQISFINFC  622 (746)
T ss_pred             HHhcCCCccEE
Confidence            99999999865

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.1e-35  Score=254.50  Aligned_cols=181  Identities=19%  Similarity=0.226  Sum_probs=157.7

Q ss_pred             CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC-CccCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG-DYVPEH   78 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~   78 (199)
                      +.++++|++++.|+..... ...+++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++..... .....+
T Consensus       275 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  354 (539)
T PRK06334        275 TFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESC  354 (539)
T ss_pred             cEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCc
Confidence            3467899999998865433 34458899999999999999999999988 68899999999998766654332 234567


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC---CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS---IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~---~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      +|+|+++++++++|++++++++.|+.|||+++|++++.|||++|+.+.   ...++||+|||+|++|++|++++.     
T Consensus       355 vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~-----  429 (539)
T PRK06334        355 VGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLK-----  429 (539)
T ss_pred             CceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEE-----
Confidence            999999999999997788999999999999999999999999998765   234689999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCcccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQS  191 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~  191 (199)
                          ||.+|+||.+|++|+|.|||++|.+||.|.+.
T Consensus       430 ----GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~  461 (539)
T PRK06334        430 ----GRLSRFVKIGAEMVSLEALESILMEGFGQNAA  461 (539)
T ss_pred             ----eccCCeEEECCEEECHHHHHHHHHHccCCccc
Confidence                99999999999999999999999999999863

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.8e-36  Score=261.64  Aligned_cols=157  Identities=32%  Similarity=0.579  Sum_probs=135.7

Q ss_pred             CceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCC-ccCCCCCccccCcEEEEEeCC--CCcccC
Q psy14311         25 GNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGD-YVPEHVGPPICCCSVKLVDVP--EMDYFA  100 (199)
Q Consensus        25 ~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~G~p~~~~~~~v~d~~--~~~~~~  100 (199)
                      .+||.+++||+++++++. .|.+.+ ++.+++.||+||+++.++...... ...+++|+|+|+++++|+|++  ++++++
T Consensus       386 ~~lr~~~~Gga~l~~~~~-~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~  464 (666)
T PLN02614        386 GNVRIILSGAAPLASHVE-SFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALA  464 (666)
T ss_pred             CcEEEEEEcCCCCCHHHH-HHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCC
Confidence            589999999999998764 555556 589999999999987554433322 346899999999999999833  347899


Q ss_pred             CCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEe-cceecccccc
Q psy14311        101 HEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRS-RSRHSLGKRV  178 (199)
Q Consensus       101 ~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~-~g~~v~~~ei  178 (199)
                      +|+.|||+++||+++.|||++|+.+. ...+|||+|||+|++|+||+|+|+         ||.+|+||. +|++|+|.||
T Consensus       465 ~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~---------gR~kd~ik~~~G~~V~p~eI  535 (666)
T PLN02614        465 STPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKII---------DRKKNIFKLSQGEYVAVENI  535 (666)
T ss_pred             CCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEE---------EcchhceecCCCeeecHHHH
Confidence            99999999999999999999999987 445899999999999999999999         999999995 7999999999


Q ss_pred             cccccCCcccccc
Q psy14311        179 EGTVHGETKRSQS  191 (199)
Q Consensus       179 E~~l~~~~~~~~~  191 (199)
                      |++|.+||.|.+.
T Consensus       536 E~~l~~~p~V~~~  548 (666)
T PLN02614        536 ENIYGEVQAVDSV  548 (666)
T ss_pred             HHHHhcCCCeeEE
Confidence            9999999999865

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-35  Score=258.46  Aligned_cols=182  Identities=14%  Similarity=0.148  Sum_probs=156.8

Q ss_pred             CccccchhHHHHHHHhhh------hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-Cc
Q psy14311          2 KGIYRRNSIWDKLVFKKV------QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DY   74 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~------~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~   74 (199)
                      +.++++|++++.|+....      ....+++||.++++|+++++++++++++.+++.+++.||+||+++.+...... ..
T Consensus       351 t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~  430 (647)
T PTZ00237        351 THTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINI  430 (647)
T ss_pred             EEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCC
Confidence            356789999999986432      22345789999999999999999999999999999999999998754433222 22


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecC---cccccccCCCcCCC--C-CCCCeeecCceEEEcCCCeEE
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN---NVFLGYFKDPELNS--I-DELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~--~-~~~g~~~TGD~~~~d~~g~l~  148 (199)
                      ..+++|+|+++++++|+| ++|++++.|+.|||++++|   +++.|||++|+.+.  + ..+|||+|||++++|++|+++
T Consensus       431 ~~~s~G~p~~g~~~~i~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~  509 (647)
T PTZ00237        431 PYNATGVPSIFIKPSILS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYT  509 (647)
T ss_pred             CCCCCccCcCCceEEEEC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEE
Confidence            347899999999999999 6899999999999999975   78999999998876  3 237999999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+         ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       510 i~---------GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaav  545 (647)
T PTZ00237        510 IV---------SRSDDQIKISGNKVQLNTIETSILKHPLVLECCS  545 (647)
T ss_pred             EE---------eccCCEEEECCEEeCHHHHHHHHHhCCCceeeEE
Confidence            99         9999999999999999999999999999987644

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4e-35  Score=255.93  Aligned_cols=158  Identities=41%  Similarity=0.685  Sum_probs=139.2

Q ss_pred             CceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccccCcEEEEEeCCCCcc---cCC
Q psy14311         25 GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDY---FAH  101 (199)
Q Consensus        25 ~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~v~d~~~~~~---~~~  101 (199)
                      .++|.+++||+++++++++++++.+++.+++.||+||+++.++.........+++|+|+|+++++++|++++..   ..+
T Consensus       376 ~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~  455 (651)
T PLN02736        376 GRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQP  455 (651)
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCC
Confidence            48999999999999999999998889999999999999886665554445678999999999999998543322   233


Q ss_pred             CCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEe-cceecccccc
Q psy14311        102 EGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRS-RSRHSLGKRV  178 (199)
Q Consensus       102 g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~-~g~~v~~~ei  178 (199)
                      +..|||+++||+++.|||++|+.+.  +..+|||+|||+|++|+||+|+|+         ||.+|+||+ +|++|+|.||
T Consensus       456 ~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~---------GR~kd~ik~~~G~~V~p~eI  526 (651)
T PLN02736        456 YPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKII---------DRKKNIFKLAQGEYIAPEKI  526 (651)
T ss_pred             CCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEE---------EechhheEcCCCcEechHHH
Confidence            4479999999999999999999887  557899999999999999999999         999999996 7999999999


Q ss_pred             cccccCCcccccc
Q psy14311        179 EGTVHGETKRSQS  191 (199)
Q Consensus       179 E~~l~~~~~~~~~  191 (199)
                      |++|..||.|.++
T Consensus       527 E~~l~~~p~V~~a  539 (651)
T PLN02736        527 ENVYAKCKFVAQC  539 (651)
T ss_pred             HHHHhcCCCeeEE
Confidence            9999999999865

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=8.7e-35  Score=255.37  Aligned_cols=158  Identities=35%  Similarity=0.566  Sum_probs=137.3

Q ss_pred             CceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccccCcEEEEEeCCCCccc---CC
Q psy14311         25 GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYF---AH  101 (199)
Q Consensus        25 ~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~v~d~~~~~~~---~~  101 (199)
                      .++|.+++||+|+++++.++++..+|+++++.||+||+++.++.........+++|+|+|+++++++|++++...   .+
T Consensus       420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~  499 (696)
T PLN02387        420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP  499 (696)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence            589999999999999999888888899999999999998766655544456789999999999999995444322   23


Q ss_pred             CCcceEEEecCcccccccCCCcCCC--C--CCCC--eeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEe-cceecc
Q psy14311        102 EGKGEVCVRGNNVFLGYFKDPELNS--I--DELG--WHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRS-RSRHSL  174 (199)
Q Consensus       102 g~~Gel~i~~~~~~~gy~~~~~~~~--~--~~~g--~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~-~g~~v~  174 (199)
                      +..|||+++||+++.|||++|+.+.  +  +.+|  ||+|||+|++|+||+|+|+         ||.+|+||. +|++|+
T Consensus       500 ~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~---------gR~kd~ik~~~Ge~I~  570 (696)
T PLN02387        500 MPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEII---------DRKKDIVKLQHGEYVS  570 (696)
T ss_pred             CCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEE---------EcccceEECCCCeEEc
Confidence            4469999999999999999999887  3  3445  9999999999999999999         999999997 699999


Q ss_pred             cccccccccCCcccccc
Q psy14311        175 GKRVEGTVHGETKRSQS  191 (199)
Q Consensus       175 ~~eiE~~l~~~~~~~~~  191 (199)
                      |.|||++|.+||.|.+.
T Consensus       571 p~eIE~~l~~~p~V~~~  587 (696)
T PLN02387        571 LGKVEAALSVSPYVDNI  587 (696)
T ss_pred             hHHHHHHHhcCCCeeEE
Confidence            99999999999999864

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.1e-34  Score=250.64  Aligned_cols=180  Identities=24%  Similarity=0.318  Sum_probs=157.2

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~G~   81 (199)
                      .++++|+++..|+..+......++||.+++||+++++++.++|++.+++++++.||+||++.++...... ....+++|+
T Consensus       311 ~~~~~P~~~~~l~~~~~~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~  390 (632)
T PRK07529        311 FLSGVPTVYAALLQVPVDGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGL  390 (632)
T ss_pred             EEEeHHHHHHHHHhCcccCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCccc
Confidence            4678999999998766545466899999999999999999999999999999999999998866655433 236789999


Q ss_pred             cccCcEEEEE--eCCCC---cccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         82 PICCCSVKLV--DVPEM---DYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        82 p~~~~~~~v~--d~~~~---~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      |+|+++++++  | +++   +++++|+.|||+++||+++.||+++++... +..++||+|||++++|++|++++.     
T Consensus       391 ~~p~~~v~i~~~d-~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~-----  464 (632)
T PRK07529        391 RLPYQRVRVVILD-DAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLT-----  464 (632)
T ss_pred             ccCCceEEEEEcC-CCCcccccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEE-----
Confidence            9999999885  5 455   789999999999999999999998765444 557899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                          ||.+|+|+.+|.+|+|.|||++|.+||.|.++.
T Consensus       465 ----GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~  497 (632)
T PRK07529        465 ----GRAKDLIIRGGHNIDPAAIEEALLRHPAVALAA  497 (632)
T ss_pred             ----ecccCEEEeCCEEECHHHHHHHHHhCCCeeEEE
Confidence                999999999999999999999999999998654

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.8e-34  Score=246.07  Aligned_cols=182  Identities=20%  Similarity=0.302  Sum_probs=154.8

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHh--CCcEEeecccccCCCceeecccC-------
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTECVAPITLTIQG-------   72 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~-------   72 (199)
                      .++++|++++.|+..... ...++++|.+++||+++++++.+++++.+  ++++++.||+||++.+++.....       
T Consensus       265 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  344 (552)
T PRK09274        265 NLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRA  344 (552)
T ss_pred             EEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccc
Confidence            467899999999865432 33568899999999999999999999998  46999999999998765543221       


Q ss_pred             ---CccCCCCCccccCcEEEEEeCC--------CCcccCCCCcceEEEecCcccccccCCCcCCC--C--CCCC--eeec
Q psy14311         73 ---DYVPEHVGPPICCCSVKLVDVP--------EMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I--DELG--WHHT  135 (199)
Q Consensus        73 ---~~~~~~~G~p~~~~~~~v~d~~--------~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~--~~~g--~~~T  135 (199)
                         .....++|+|+++++++++|++        ++++++.|+.|||+++|+.++.|||++|+.+.  +  +.+|  ||+|
T Consensus       345 ~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~T  424 (552)
T PRK09274        345 ATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRM  424 (552)
T ss_pred             cccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEc
Confidence               1122478999999999999853        56789999999999999999999999998876  2  3456  9999


Q ss_pred             CceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        136 GDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       136 GD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ||++++|++|++++.         ||.+|+|+.+|.+|+|.|||++|.+||.|.++..
T Consensus       425 GDlg~~d~dG~l~~~---------GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v  473 (552)
T PRK09274        425 GDLGYLDAQGRLWFC---------GRKAHRVETAGGTLYTIPCERIFNTHPGVKRSAL  473 (552)
T ss_pred             CCEEEEccCCcEEEE---------eccCCeEEECCEEECcHHHHHHHHhCcccceeEE
Confidence            999999999999999         9999999999999999999999999999986543

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-34  Score=253.89  Aligned_cols=157  Identities=31%  Similarity=0.483  Sum_probs=138.8

Q ss_pred             CceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccccCcEEEEEeCCCC-cccCCCC
Q psy14311         25 GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEM-DYFAHEG  103 (199)
Q Consensus        25 ~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~v~d~~~~-~~~~~g~  103 (199)
                      .++|.+++||+++++++.++++..++ .+++.||+||+++.++.........+++|+|+++++++|+|++.. ...+++.
T Consensus       428 ~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~  506 (700)
T PTZ00216        428 GRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEP  506 (700)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCC
Confidence            57999999999999999998888778 999999999998766555444446789999999999999995432 2345566


Q ss_pred             cceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEE-ecceecccccccc
Q psy14311        104 KGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIR-SRSRHSLGKRVEG  180 (199)
Q Consensus       104 ~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~-~~g~~v~~~eiE~  180 (199)
                      .|||+++||+++.|||++|+.+.  +..+|||+|||+|++|+||+|+|+         ||.+|+|| .+|++|+|.|||+
T Consensus       507 ~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~---------GR~kd~ik~~~G~~I~p~eIE~  577 (700)
T PTZ00216        507 RGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRII---------GRVKALAKNCLGEYIALEALEA  577 (700)
T ss_pred             CceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEE---------EehHhheecCCCceeccHHHHH
Confidence            79999999999999999999987  667899999999999999999999         99999998 9999999999999


Q ss_pred             cccCCcccccc
Q psy14311        181 TVHGETKRSQS  191 (199)
Q Consensus       181 ~l~~~~~~~~~  191 (199)
                      ++.+||.|.+.
T Consensus       578 ~l~~~p~V~~~  588 (700)
T PTZ00216        578 LYGQNELVVPN  588 (700)
T ss_pred             HHhcCcCcccc
Confidence            99999999874

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3e-34  Score=246.51  Aligned_cols=181  Identities=22%  Similarity=0.283  Sum_probs=158.8

Q ss_pred             ccccchhHHHHHHHhhhh--hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeeccc--CCccCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ--EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQ--GDYVPE   77 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~--~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~--~~~~~~   77 (199)
                      .++.+|+++..|+.....  ...++++|.++++|+++++++++++.+.+ ++.+++.||+||++.+++....  .....+
T Consensus       295 ~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  374 (560)
T PLN02574        295 HFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYS  374 (560)
T ss_pred             EEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCC
Confidence            467899999999865432  34567899999999999999999999888 6899999999999875543222  123567


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      ++|+|+++++++|+|++++++++.|+.|||+++|++++.||+++|+.+.  +..+|||+|||++++|++|++++.     
T Consensus       375 ~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~-----  449 (560)
T PLN02574        375 SVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIV-----  449 (560)
T ss_pred             ceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEE-----
Confidence            8999999999999998899999999999999999999999999999886  567899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                          ||.+|+|+.+|++|+|.|||.+|.+||.|.+..
T Consensus       450 ----GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~  482 (560)
T PLN02574        450 ----DRLKEIIKYKGFQIAPADLEAVLISHPEIIDAA  482 (560)
T ss_pred             ----ecchhheEECCEEECHHHHHHHHHhCCCcceEE
Confidence                999999999999999999999999999998654

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.3e-34  Score=250.49  Aligned_cols=157  Identities=29%  Similarity=0.455  Sum_probs=133.3

Q ss_pred             CceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecccC-CccCCCCCccccCcEEEEEeC-CCC-cccC
Q psy14311         25 GNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQG-DYVPEHVGPPICCCSVKLVDV-PEM-DYFA  100 (199)
Q Consensus        25 ~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~v~d~-~~~-~~~~  100 (199)
                      .++|.+++||+++++++.+ |.+.++ ..+++.||+||+++.++..... ....+++|+|+++++++++|. +.| ..++
T Consensus       383 ~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~  461 (660)
T PLN02861        383 GRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALS  461 (660)
T ss_pred             CcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCC
Confidence            5799999999999999865 555566 4799999999998755544332 224689999999999999983 334 3445


Q ss_pred             CCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEe-cceecccccc
Q psy14311        101 HEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRS-RSRHSLGKRV  178 (199)
Q Consensus       101 ~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~-~g~~v~~~ei  178 (199)
                      .+..|||+++||+++.|||++|+.+. .+.+|||+|||+|++|+||+|+|+         ||++|+|+. +|++|+|.||
T Consensus       462 ~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~---------GR~kd~Ik~~~G~~I~p~eI  532 (660)
T PLN02861        462 DVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKII---------DRKKNIFKLSQGEYVAVENL  532 (660)
T ss_pred             CCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEE---------eccccceEcCCCeEEcHHHH
Confidence            56689999999999999999999987 446899999999999999999999         999999996 7999999999


Q ss_pred             cccccCCcccccc
Q psy14311        179 EGTVHGETKRSQS  191 (199)
Q Consensus       179 E~~l~~~~~~~~~  191 (199)
                      |++|.+||.|.++
T Consensus       533 E~~l~~~p~V~~a  545 (660)
T PLN02861        533 ENTYSRCPLIASI  545 (660)
T ss_pred             HHHHhcCCCeeEE
Confidence            9999999999875

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=7.9e-34  Score=246.92  Aligned_cols=184  Identities=15%  Similarity=0.123  Sum_probs=156.6

Q ss_pred             CccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc----CCc
Q psy14311          2 KGIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ----GDY   74 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~----~~~   74 (199)
                      +.++++|++++.|.....   ....+++||.++++|+++++++++++++.++..+++.||+||++..+.....    ...
T Consensus       328 t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~  407 (628)
T TIGR02316       328 RTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPV  407 (628)
T ss_pred             eEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcCCC
Confidence            346789999998876532   2345689999999999999999999999999999999999999864433221    123


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecC---cccccccCCCcCCC-----CCCCCeeecCceEEEcCCCe
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN---NVFLGYFKDPELNS-----IDELGWHHTGDVGMWLPTLF  146 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~-----~~~~g~~~TGD~~~~d~~g~  146 (199)
                      ..+++|+|+++++++++|+++|++++.|+.|||++++|   +++.+||++++.+.     ...++||+|||++++|+||+
T Consensus       408 ~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~  487 (628)
T TIGR02316       408 KLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGY  487 (628)
T ss_pred             CCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCc
Confidence            45789999999999999966899999999999999998   57899999987654     13567999999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKS  194 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~~  194 (199)
                      ++|+         ||.||+||++|++|+|.|||++|.+||.|.++...
T Consensus       488 l~i~---------GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vv  526 (628)
T TIGR02316       488 TFIL---------GRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVV  526 (628)
T ss_pred             EEEE---------EcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEE
Confidence            9999         99999999999999999999999999999876543

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=4.9e-34  Score=249.65  Aligned_cols=181  Identities=16%  Similarity=0.206  Sum_probs=157.0

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeecccC--Cc
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQG--DY   74 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~~--~~   74 (199)
                      .++.+|++++.|.....   ....+++||.++++|+++++++++++.+.+|   +++.+.||+||+++........  ..
T Consensus       372 ~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~  451 (666)
T PLN02654        372 IFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQ  451 (666)
T ss_pred             EEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCC
Confidence            46789999999986542   2234578999999999999999999999997   6899999999998755543322  34


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEec--CcccccccCCCcCCC--C--CCCCeeecCceEEEcCCCeEE
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG--NNVFLGYFKDPELNS--I--DELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~--~--~~~g~~~TGD~~~~d~~g~l~  148 (199)
                      .++++|+|+++++++|+| ++|++++.++.|||++++  |+++.|||++++++.  +  ..+|||+|||++++|+||+++
T Consensus       452 ~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~  530 (666)
T PLN02654        452 KPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYW  530 (666)
T ss_pred             CCCccCCCCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEE
Confidence            678999999999999999 788999988899999998  789999999998775  2  237999999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+         ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       531 i~---------GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaV  566 (666)
T PLN02654        531 LT---------GRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV  566 (666)
T ss_pred             Ee---------eeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEE
Confidence            99         9999999999999999999999999999987643

>KOG1177|consensus

Probab=100.00  E-value=2.1e-34  Score=232.43  Aligned_cols=182  Identities=19%  Similarity=0.268  Sum_probs=162.2

Q ss_pred             CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCc-EEeecccccCCCceeecccCC---ccC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGD---YVP   76 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~---~~~   76 (199)
                      +.++.+|+++.-|++.+.. +.+.+++|.++.+|+|+++++.+.+....+.. +..+||+||++...+.+...+   ...
T Consensus       326 T~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~  405 (596)
T KOG1177|consen  326 TTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERI  405 (596)
T ss_pred             EEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHH
Confidence            4688999999999976544 45558899999999999999999988876654 778999999998777664433   245


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeee
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLV  154 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~  154 (199)
                      .++|+.+++.+..++| ..|..++.|+.|||++||++.+.|||++++.+.  ...+.||.|||++.+|++|+++++    
T Consensus       406 ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iV----  480 (596)
T KOG1177|consen  406 KSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIV----  480 (596)
T ss_pred             hhhhhccccccccccc-CCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEE----
Confidence            7899999999999999 899999999999999999999999999999887  788999999999999999999999    


Q ss_pred             eeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        155 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       155 ~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                           ||.+|+|+.+|++|+|.|||+.|..||.|...+.
T Consensus       481 -----GRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~V  514 (596)
T KOG1177|consen  481 -----GRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHV  514 (596)
T ss_pred             -----EcccCeEEeCCcccChHHHHHHHhhCCCeeeEEE
Confidence                 9999999999999999999999999999987653

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.4e-34  Score=244.10  Aligned_cols=181  Identities=22%  Similarity=0.343  Sum_probs=159.4

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      .++.+|+++..++..... ...++++|.+++||+++++++.+.|++.+++++++.||+||++.++.........++++|+
T Consensus       303 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~  382 (562)
T PRK05677        303 GFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGI  382 (562)
T ss_pred             EEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCc
Confidence            467889999888765322 2334689999999999999999999998899999999999998866655444445678999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      |+++++++++| +++++++.|+.|||+++|++++.||+++|+.+.  +..++||+|||++++|++|++++.         
T Consensus       383 ~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~---------  452 (562)
T PRK05677        383 PVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIV---------  452 (562)
T ss_pred             cCCCCEEEEEC-CCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEE---------
Confidence            99999999999 678999999999999999999999999999887  556899999999999999999999         


Q ss_pred             eecCeEEEecceecccccccccccCCcccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ||.+|+|+.+|.+|+|.|||++|.+||+|.++..
T Consensus       453 GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v  486 (562)
T PRK05677        453 DRKKDMILVSGFNVYPNELEDVLAALPGVLQCAA  486 (562)
T ss_pred             ecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEE
Confidence            9999999999999999999999999999886543

>KOG1256|consensus

Probab=100.00  E-value=6.9e-34  Score=240.36  Aligned_cols=175  Identities=49%  Similarity=0.832  Sum_probs=159.8

Q ss_pred             chhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccccCc
Q psy14311          7 RNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC   86 (199)
Q Consensus         7 ~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~   86 (199)
                      .-++++.|....++..+...+|.+++|++|+++++...++..+++.|.++||+|||++.++...+.+...+++|.|+|++
T Consensus       401 ~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~  480 (691)
T KOG1256|consen  401 RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGN  480 (691)
T ss_pred             cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCc
Confidence            45788889988889888899999999999999999999999999999999999999976666666555889999999999


Q ss_pred             EEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCe
Q psy14311         87 SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGL  164 (199)
Q Consensus        87 ~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~  164 (199)
                      +++++|+.+...-+.|..||||++|+.++.|||++|++|.  ++.|||++|||+|++|++|.|.+.         ||.++
T Consensus       481 ~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~Ii---------dRkK~  551 (691)
T KOG1256|consen  481 EVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKII---------DRKKN  551 (691)
T ss_pred             eEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEE---------ecccc
Confidence            9999998888888888899999999999999999999998  889999999999999999999999         89999


Q ss_pred             EEE-ecceecccccccccccCCccccc
Q psy14311        165 RIR-SRSRHSLGKRVEGTVHGETKRSQ  190 (199)
Q Consensus       165 ~i~-~~g~~v~~~eiE~~l~~~~~~~~  190 (199)
                      +|| .+|++|.|..||++....+-|.+
T Consensus       552 ifklaqGEyVaPe~IEniy~~~~~V~q  578 (691)
T KOG1256|consen  552 IFKLAQGEYVAPEKIENIYKRSLPVQQ  578 (691)
T ss_pred             eEEcCCCCccChHHHHHHHhcCCceEE
Confidence            875 67999999999999998776653

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=9.3e-34  Score=246.26  Aligned_cols=181  Identities=15%  Similarity=0.159  Sum_probs=156.9

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeecccC--Cc
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQG--DY   74 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~~--~~   74 (199)
                      .++++|++++.|.....   ....+++||.++++|+++++++++++.+.++   +++++.||+||+++.+......  ..
T Consensus       333 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~  412 (625)
T TIGR02188       333 IFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPT  412 (625)
T ss_pred             EEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCc
Confidence            46789999999886532   2234578999999999999999999999885   7899999999998865543322  34


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccC-CCCcceEEEec--CcccccccCCCcCCC--C--CCCCeeecCceEEEcCCCeE
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFA-HEGKGEVCVRG--NNVFLGYFKDPELNS--I--DELGWHHTGDVGMWLPTLFF  147 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~-~g~~Gel~i~~--~~~~~gy~~~~~~~~--~--~~~g~~~TGD~~~~d~~g~l  147 (199)
                      .++++|+|+++++++++| ++|++++ +|+.|||++++  |+++.|||++++.+.  +  ..+|||+|||++++|++|++
T Consensus       413 ~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l  491 (625)
T TIGR02188       413 KPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYI  491 (625)
T ss_pred             CCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcE
Confidence            678899999999999999 8899999 89999999999  689999999998765  2  24789999999999999999


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +++         ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       492 ~i~---------GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~v  528 (625)
T TIGR02188       492 WIT---------GRVDDVINVSGHRLGTAEIESALVSHPAVAEAAV  528 (625)
T ss_pred             EEE---------ecccCEEEeCCEEECHHHHHHHHHhCCCcceEEE
Confidence            999         9999999999999999999999999999987654

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-33  Score=244.75  Aligned_cols=181  Identities=15%  Similarity=0.180  Sum_probs=155.9

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeecccC--Cc
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQG--DY   74 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~~--~~   74 (199)
                      .+.++|++++.|+....   ....+++||.++++|+++++++++++.+.++   +++++.||+||++..+......  ..
T Consensus       342 ~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~  421 (637)
T PRK00174        342 IFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPL  421 (637)
T ss_pred             EEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCc
Confidence            46789999998886532   2234578999999999999999999999885   7899999999998865543322  23


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEec--CcccccccCCCcCCC--C--CCCCeeecCceEEEcCCCeEE
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG--NNVFLGYFKDPELNS--I--DELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~--~--~~~g~~~TGD~~~~d~~g~l~  148 (199)
                      .++++|+|+++++++++| +++++++.|+.|||++++  |+++.|||++++.+.  +  ..+|||+|||++++|++|+++
T Consensus       422 ~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~  500 (637)
T PRK00174        422 KPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYW  500 (637)
T ss_pred             CCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEE
Confidence            467899999999999999 789999999999999999  689999999998765  2  357899999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +.         ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus       501 ~~---------GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~V  536 (637)
T PRK00174        501 IT---------GRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAV  536 (637)
T ss_pred             EE---------EecccEEEeCCEEECHHHHHHHHHhCCCcceEEE
Confidence            99         9999999999999999999999999999986543

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.1e-33  Score=240.65  Aligned_cols=159  Identities=35%  Similarity=0.604  Sum_probs=145.7

Q ss_pred             HHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccccCcEEEE
Q psy14311         11 WDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSVKL   90 (199)
Q Consensus        11 ~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~v   90 (199)
                      .+.|+...++.....++|.+++||+++++++..+++.. |+++.++||+|||++.++.+.+.....+++|.|+|+++++|
T Consensus       339 ~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI  417 (613)
T COG1022         339 ADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKI  417 (613)
T ss_pred             hhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccCcccCCcCCcCCCceEEE
Confidence            34455666676667889999999999999999999886 89999999999999999999888888999999999999999


Q ss_pred             EeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEE-E
Q psy14311         91 VDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRI-R  167 (199)
Q Consensus        91 ~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i-~  167 (199)
                      .|           .|||+++||.+|.|||++|++|.  +++||||+|||+|.+|++|+|+++         ||.+|.| .
T Consensus       418 ~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~---------gRkK~~i~l  477 (613)
T COG1022         418 AD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVIT---------GRKKELIKL  477 (613)
T ss_pred             cc-----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEe---------ecccceEEC
Confidence            99           59999999999999999999998  888999999999999999999999         8888876 5


Q ss_pred             ecceecccccccccccCCccccc
Q psy14311        168 SRSRHSLGKRVEGTVHGETKRSQ  190 (199)
Q Consensus       168 ~~g~~v~~~eiE~~l~~~~~~~~  190 (199)
                      .+|++|.|..||..+..+|-|.+
T Consensus       478 ~~GknIaP~~IE~~l~~~~~I~q  500 (613)
T COG1022         478 SNGKNIAPEPIESKLAKSPLIEQ  500 (613)
T ss_pred             CCCcccChHHHHHHHhcCCCeeE
Confidence            78999999999999999998875

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-33  Score=241.27  Aligned_cols=180  Identities=19%  Similarity=0.204  Sum_probs=156.4

Q ss_pred             CccccchhHHHHHHHhhhh---hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ---EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPE   77 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~---~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~   77 (199)
                      +.++++|+++..|+.....   ....++||.+++||+++++++.+++.+.++..+++.||+||++..+...... ...++
T Consensus       297 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~  376 (549)
T PRK07788        297 TALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPG  376 (549)
T ss_pred             cEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCC
Confidence            3567899999999865432   2345789999999999999999999999999999999999998655433221 23567


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      ++|+|+++++++++| +++++++.|+.|||+++|+.++.||+++++..  ..+|||+|||++++|++|++++.       
T Consensus       377 ~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~--~~~g~~~TGDl~~~~~~g~l~~~-------  446 (549)
T PRK07788        377 TVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQ--IIDGLLSSGDVGYFDEDGLLFVD-------  446 (549)
T ss_pred             CcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCccc--ccCCceecCceEEEcCCCCEEEe-------
Confidence            899999999999999 78999999999999999999999999998763  24789999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                        ||.+|+|+.+|++|+|.|||++|.+||.|.++..
T Consensus       447 --GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v  480 (549)
T PRK07788        447 --GRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAV  480 (549)
T ss_pred             --ccCcceEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence              9999999999999999999999999999986643

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-33  Score=245.17  Aligned_cols=179  Identities=16%  Similarity=0.197  Sum_probs=155.7

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      .++++|+++..++... ....++++|.+++||+++++++.+++.+.+ ++++++.||+||++..+..........+++|+
T Consensus       239 ~~~~~P~~l~~l~~~~-~~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~  317 (705)
T PRK06060        239 VLYGVPNFFARVIDSC-SPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGR  317 (705)
T ss_pred             EEeeHHHHHHHHHHhc-ccccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccc
Confidence            4568899998887543 223457899999999999999999999988 58999999999998765544333445678999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTR  161 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR  161 (199)
                      |+++++++++| +++++++.|+.|||+++|++++.||+++|+.+. ..++||+|||++++|++|++++.         ||
T Consensus       318 p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~-~~~~~~~TGDl~~~~~dG~l~~~---------GR  386 (705)
T PRK06060        318 VLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV-ANEGWLDTRDRVCIDSDGWVTYR---------CR  386 (705)
T ss_pred             cCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCcccc-cCCCcEECCeeEEECCCceEEEe---------cc
Confidence            99999999999 678999999999999999999999999998653 34789999999999999999999         99


Q ss_pred             cCeEEEecceecccccccccccCCcccccccc
Q psy14311        162 IGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       162 ~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      .+|+||++|++|+|.|||++|.+||.|.++..
T Consensus       387 ~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~v  418 (705)
T PRK06060        387 ADDTEVIGGVNVDPREVERLIIEDEAVAEAAV  418 (705)
T ss_pred             cCceEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence            99999999999999999999999999987643

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.3e-33  Score=257.56  Aligned_cols=177  Identities=23%  Similarity=0.317  Sum_probs=154.9

Q ss_pred             ccccchhHHHHHHHhh-hhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC---------
Q psy14311          3 GIYRRNSIWDKLVFKK-VQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG---------   72 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~-~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~---------   72 (199)
                      .++++|++++.+.... ......+++|.+++||+++++++.+.+++.+++++++.||+||++++++....+         
T Consensus       875 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  954 (1146)
T PRK08633        875 ILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQ  954 (1146)
T ss_pred             EEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccccc
Confidence            4678999999887643 233455889999999999999999999999999999999999998866544221         


Q ss_pred             -CccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCC----CCeeecCceEEEcCCCe
Q psy14311         73 -DYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDE----LGWHHTGDVGMWLPTLF  146 (199)
Q Consensus        73 -~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~----~g~~~TGD~~~~d~~g~  146 (199)
                       ...++++|+|+|+++++++|+++++++++|+.|||+++|++++.||+++|+.+. ...    ++||+|||++++|+||+
T Consensus       955 ~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~ 1034 (1146)
T PRK08633        955 TGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGF 1034 (1146)
T ss_pred             cCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCce
Confidence             124678999999999999998889999999999999999999999999999876 222    38999999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKR  188 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~  188 (199)
                      +++.         ||.+|+||.+|++|+|.|||++|.+||++
T Consensus      1035 l~~~---------gR~~d~i~~~G~~v~~~eiE~~l~~~~~~ 1067 (1146)
T PRK08633       1035 LTIT---------DRYSRFAKIGGEMVPLGAVEEELAKALGG 1067 (1146)
T ss_pred             EEEE---------ecccchhhhCcEEECHHHHHHHHHhccCC
Confidence            9999         99999999999999999999999999953

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5e-33  Score=235.96  Aligned_cols=180  Identities=13%  Similarity=0.043  Sum_probs=145.8

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHh--CCcEEeecccccCCCceeecc-cCCccC
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTECVAPITLTI-QGDYVP   76 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~-~~~~~~   76 (199)
                      .++++|+++..|+....   ....+++||.++++|++++++..+++++.+  ++.+++.||+||++..+.... .....+
T Consensus       211 ~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~  290 (499)
T PLN03051        211 VLGLVPSIVKAWRHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAP  290 (499)
T ss_pred             EEEeCHHHHHHHHhcCccccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCC
Confidence            46789999999876532   233457899999999999999998887743  478999999999875433222 122346


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCC--CcceEEEecCcc--cccccCCCcCCC-CC---------CCCeeecCceEEEc
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHE--GKGEVCVRGNNV--FLGYFKDPELNS-ID---------ELGWHHTGDVGMWL  142 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g--~~Gel~i~~~~~--~~gy~~~~~~~~-~~---------~~g~~~TGD~~~~d  142 (199)
                      +++|+|.++++++|+| +++++++.|  +.|||+++||.+  +.|||+++. +. +.         ...||+|||+|++|
T Consensus       291 ~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d  368 (499)
T PLN03051        291 GAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRT  368 (499)
T ss_pred             ccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEEC
Confidence            7899999999999999 789999988  479999999976  589998653 33 21         12279999999999


Q ss_pred             CCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccC-Ccccccccc
Q psy14311        143 PTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHG-ETKRSQSRK  193 (199)
Q Consensus       143 ~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~-~~~~~~~~~  193 (199)
                      +||+|+|+         ||.+|+||.+|++|+|.|||++|.+ ||+|.++..
T Consensus       369 ~dG~l~~~---------gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aav  411 (499)
T PLN03051        369 PGGYFCVQ---------GRADDTMNLGGIKTSSVEIERACDRAVAGIAETAA  411 (499)
T ss_pred             CCCcEEEE---------eccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEE
Confidence            99999999         9999999999999999999999996 999987643

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5e-33  Score=239.34  Aligned_cols=180  Identities=17%  Similarity=0.215  Sum_probs=157.2

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~   78 (199)
                      .++++|++++.|+....   ....+++||.++++|+++++++.+++++.++.++++.||+||++..+...... ...+++
T Consensus       298 ~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  377 (570)
T PRK04319        298 VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGS  377 (570)
T ss_pred             EEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCc
Confidence            46789999999886432   22345789999999999999999999999999999999999998765543322 335688


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEec--CcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG--NNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      +|+|+++++++++| +++.++++|+.|||++++  |+++.||+++++.+. ...+|||+|||++++|++|++++.     
T Consensus       378 ~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~-----  451 (570)
T PRK04319        378 MGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQ-----  451 (570)
T ss_pred             CcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEE-----
Confidence            99999999999999 778889999999999987  899999999999887 445899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                          ||.+|+|+.+|++|+|.|||++|.+||.|.++.
T Consensus       452 ----GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~  484 (570)
T PRK04319        452 ----GRVDDVIKTSGERVGPFEVESKLMEHPAVAEAG  484 (570)
T ss_pred             ----ecCCCEEEECCEEECHHHHHHHHhhCCCeeecc
Confidence                999999999999999999999999999998754

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-32  Score=236.46  Aligned_cols=180  Identities=23%  Similarity=0.366  Sum_probs=157.8

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~G   80 (199)
                      .++.+|+++..|+..... ...++++|.++++|+++++++.+.|.+.+++++++.||+||++.+++..... ....+++|
T Consensus       310 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  389 (562)
T PRK12492        310 ALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVG  389 (562)
T ss_pred             eeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccc
Confidence            467889999988765432 3345789999999999999999999998899999999999998866554332 22457899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +|+++++++++| +++++++.|+.|||+++|+.++.|||++|+.+.  +..++||+|||++++|++|++++.        
T Consensus       390 ~p~~~~~v~ivd-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~--------  460 (562)
T PRK12492        390 IPVPGTALKVID-DDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIV--------  460 (562)
T ss_pred             eecCCCEEEEEC-CCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEe--------
Confidence            999999999999 688999999999999999999999999998876  446799999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                       ||.+|+|+.+|.+|+|.|||.+|.+||.|.+..
T Consensus       461 -GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~  493 (562)
T PRK12492        461 -DRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCA  493 (562)
T ss_pred             -cccCCeEEECCEEECHHHHHHHHHhCCCeeEEE
Confidence             999999999999999999999999999998664

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.8e-33  Score=240.33  Aligned_cols=182  Identities=18%  Similarity=0.186  Sum_probs=154.2

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc----CCcc
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ----GDYV   75 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~----~~~~   75 (199)
                      .++++|++++.|.....   ....+++||.++++|+++++++++++.+.+++++++.||+||++..+.....    ....
T Consensus       330 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~  409 (629)
T PRK10524        330 RMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTR  409 (629)
T ss_pred             EEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCC
Confidence            46789999998876432   2334578999999999999999999999999999999999999853322211    1234


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecC---cccccccCCCcCCC-----CCCCCeeecCceEEEcCCCeE
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN---NVFLGYFKDPELNS-----IDELGWHHTGDVGMWLPTLFF  147 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~-----~~~~g~~~TGD~~~~d~~g~l  147 (199)
                      ++++|+|+++++++++|+++|++++.|+.|||++++|   +++.+||++++.+.     ...++||+|||++++|++|++
T Consensus       410 ~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l  489 (629)
T PRK10524        410 LGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYY  489 (629)
T ss_pred             CCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcE
Confidence            6789999999999999955899999999999999997   57889999987654     124689999999999999999


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +|.         ||.||+||.+|.+|+|.|||++|.+||.|.++..
T Consensus       490 ~i~---------GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~v  526 (629)
T PRK10524        490 FIL---------GRTDDVINVAGHRLGTREIEESISSHPAVAEVAV  526 (629)
T ss_pred             EEE---------EEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEE
Confidence            999         9999999999999999999999999999986543

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.3e-32  Score=234.99  Aligned_cols=175  Identities=20%  Similarity=0.287  Sum_probs=148.6

Q ss_pred             ccccchhHHHHHHHhhhh---hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCC-----
Q psy14311          3 GIYRRNSIWDKLVFKKVQ---EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGD-----   73 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~---~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-----   73 (199)
                      .++++|+++..|+.....   ....+++|.+++||+++++++.+.|++.| ++++++.||+||++..++......     
T Consensus       263 ~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  342 (563)
T PLN02860        263 SMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLES  342 (563)
T ss_pred             eEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCccccccccccccccc
Confidence            467899999998865322   23457899999999999999999999988 689999999999986443221100     


Q ss_pred             ------------------ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCee
Q psy14311         74 ------------------YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWH  133 (199)
Q Consensus        74 ------------------~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~  133 (199)
                                        ....++|+|++++++++++++      +|+.|||+++|+.++.|||++|+.+.  +..+|||
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~  416 (563)
T PLN02860        343 PKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL  416 (563)
T ss_pred             chhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence                              112368999999999999843      57899999999999999999999887  5678999


Q ss_pred             ecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        134 HTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       134 ~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      +|||++++|++|+++|.         ||.+|+|+.+|++|+|.|||++|..||.|.++.
T Consensus       417 ~TGDl~~~d~dG~l~~~---------GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~  466 (563)
T PLN02860        417 DTGDIGWIDKAGNLWLI---------GRSNDRIKTGGENVYPEEVEAVLSQHPGVASVV  466 (563)
T ss_pred             EccceEEEcCCCCEEEe---------ecccceeEECCEEccHHHHHHHHHhCCCcceeE
Confidence            99999999999999999         999999999999999999999999999998654

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-32  Score=229.71  Aligned_cols=180  Identities=25%  Similarity=0.390  Sum_probs=155.5

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCcc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP   82 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p   82 (199)
                      .++++|+++..|+........+.++|.+++||++++++++++|++.++..+++.||+||++..++........++++|+|
T Consensus       219 ~~~~~P~~~~~l~~~~~~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~  298 (471)
T PRK07787        219 LYFGVPTVWSRIAADPEAARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLP  298 (471)
T ss_pred             EEEcchHHHHHHHhCccccccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCccccc
Confidence            46789999999886543334557899999999999999999999989999999999999987655444434456789999


Q ss_pred             ccCcEEEEEeCCCCcccCC-CC-cceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         83 ICCCSVKLVDVPEMDYFAH-EG-KGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        83 ~~~~~~~v~d~~~~~~~~~-g~-~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +++++++++| +++++++. |+ .|||+++|++++.||+++|+.+.  +..++||+|||++++|++|+++++        
T Consensus       299 ~~g~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~--------  369 (471)
T PRK07787        299 LAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIV--------  369 (471)
T ss_pred             CCCcEEEEEC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEe--------
Confidence            9999999999 56788873 43 79999999999999999999887  556899999999999999999999        


Q ss_pred             eeec-CeEEEecceecccccccccccCCccccccc
Q psy14311        159 YTRI-GLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       159 ~gR~-~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                       ||. +++++.+|.+|+|.|||++|..||.|.++.
T Consensus       370 -GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~  403 (471)
T PRK07787        370 -GRESTDLIKSGGYRIGAGEIETALLGHPGVREAA  403 (471)
T ss_pred             -CCCCceeEeeCCEEECHHHHHHHHHhCCCcceEE
Confidence             996 899999999999999999999999987653

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=4.6e-32  Score=232.25  Aligned_cols=180  Identities=23%  Similarity=0.281  Sum_probs=156.2

Q ss_pred             cccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC--ccCCCCC
Q psy14311          4 IYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD--YVPEHVG   80 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--~~~~~~G   80 (199)
                      ++++|+++..|+..... ....+++|.++++|+++++++.+++++.+++++++.||+||++.+++......  ....++|
T Consensus       290 ~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  369 (547)
T PRK13295        290 TMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDG  369 (547)
T ss_pred             EEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccc
Confidence            45789999888765322 23457899999999999999999999999999999999999987655443221  2346789


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEee
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYT  160 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~g  160 (199)
                      +|+++++++++| +++++++.|+.|||+++|++++.||+++|+.+....+|||+|||+++++++|++++.         |
T Consensus       370 ~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~~~g~l~~~---------g  439 (547)
T PRK13295        370 CPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDADGYIRIS---------G  439 (547)
T ss_pred             cccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEcCCceEEEE---------e
Confidence            999999999999 678999999999999999999999999999887436789999999999999999999         9


Q ss_pred             ecCeEEEecceecccccccccccCCcccccccc
Q psy14311        161 RIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       161 R~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |.+|+|+.+|.+|+|.+||++|..||.|.++..
T Consensus       440 R~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v  472 (547)
T PRK13295        440 RSKDVIIRGGENIPVVEIEALLYRHPAIAQVAI  472 (547)
T ss_pred             ccCCeEEECCEEECHHHHHHHHHhCCCeeeEEE
Confidence            999999999999999999999999999986544

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-32  Score=234.00  Aligned_cols=181  Identities=22%  Similarity=0.282  Sum_probs=157.2

Q ss_pred             ccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      .+.++|+++..++.... ....++++|.+++||+++++++++++.+.+++++++.||+||++..+...........++|.
T Consensus       282 ~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~  361 (546)
T PRK08314        282 HWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGI  361 (546)
T ss_pred             eecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCCCCCccCc
Confidence            46789999988875432 23345789999999999999999999999999999999999998866554443345678999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C---CCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I---DELGWHHTGDVGMWLPTLFFFFIPMLVIM  156 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~---~~~g~~~TGD~~~~d~~g~l~~~~r~~~~  156 (199)
                      |+++++++++|++++++++.|+.|||+++|++++.||+++++.+.  +   ..++||+|||++++|++|++++.      
T Consensus       362 ~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~------  435 (546)
T PRK08314        362 PTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFIT------  435 (546)
T ss_pred             ccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEE------
Confidence            999999999998889999999999999999999999999988765  2   23469999999999999999999      


Q ss_pred             eEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                         ||.+|+|+.+|.+|+|.|||++|.+||.|.++.
T Consensus       436 ---GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~  468 (546)
T PRK08314        436 ---DRLKRMINASGFKVWPAEVENLLYKHPAIQEAC  468 (546)
T ss_pred             ---ecchhhEEeCCEEECHHHHHHHHHhCcchheEE
Confidence               999999999999999999999999999987654

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-32  Score=233.70  Aligned_cols=178  Identities=20%  Similarity=0.255  Sum_probs=152.5

Q ss_pred             ccccchhHHHHHHHhhhh---hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ---EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~---~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~   78 (199)
                      .++.+|++++.|+.....   .....++|.+++||+++++++++.|.+.++..+++.||+||++.++...... ...+++
T Consensus       287 ~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  366 (537)
T PRK13382        287 GLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDT  366 (537)
T ss_pred             EEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCC
Confidence            467899999998754321   2233689999999999999999999999999999999999998866543321 235678


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +|+|+++++++++| +++++++.|+.|||+++|++++.||+  ++.+....+|||+|||++++|++|++++.        
T Consensus       367 vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~~~~g~~~TGDl~~~~~~g~l~~~--------  435 (537)
T PRK13382        367 AGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKDFHDGFMASGDVGYLDENGRLFVV--------  435 (537)
T ss_pred             ccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhhccCCCEeeCceEEEeCCCcEEEe--------
Confidence            99999999999999 67899999999999999999999998  44444334799999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                       ||.+|+|+.+|++|+|.|||.+|.+||.|.+..
T Consensus       436 -GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~  468 (537)
T PRK13382        436 -GRDDEMIVSGGENVYPIEVEKTLATHPDVAEAA  468 (537)
T ss_pred             -ccccceeEECCEEECHHHHHHHHHhCCCEeeEE
Confidence             999999999999999999999999999988654

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=1.4e-32  Score=239.14  Aligned_cols=184  Identities=17%  Similarity=0.214  Sum_probs=149.6

Q ss_pred             CccccchhHHHHHHHhh-hh-----hccCCceeEEEEecCCCCHHHHHHHHHHh---CC---cEEeecccccCCCceeec
Q psy14311          2 KGIYRRNSIWDKLVFKK-VQ-----EDMGGNLRLMLAGSAPLAGNVLTFLRCAL---GC---LVIEGYGQTECVAPITLT   69 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~-~~-----~~~~~slr~i~~~G~~~~~~~~~~~~~~~---~~---~i~~~yG~tE~~~~~~~~   69 (199)
                      +.+.++|+++..++... ..     ...+++||.+++||+++++++.++|.+.|   |+   .+++.||+||++..++..
T Consensus       277 ~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~  356 (631)
T PRK07769        277 GTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTT  356 (631)
T ss_pred             ceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEecc
Confidence            34567888877665421 11     23457899999999999999999999987   33   499999999997655433


Q ss_pred             ccCC---------------------------ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCC
Q psy14311         70 IQGD---------------------------YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDP  122 (199)
Q Consensus        70 ~~~~---------------------------~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~  122 (199)
                      ....                           ....++|+|+++.+++++|++++++++.|+.|||+++||+++.|||+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~  436 (631)
T PRK07769        357 PMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKP  436 (631)
T ss_pred             CCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCCh
Confidence            2111                           0124789999999999999788999999999999999999999999999


Q ss_pred             cCCC--CC-----------------CCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceeccccccccccc
Q psy14311        123 ELNS--ID-----------------ELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVH  183 (199)
Q Consensus       123 ~~~~--~~-----------------~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~  183 (199)
                      +.+.  +.                 .++||+|||+|+++ +|+|+|+         ||.+|+||.+|++|+|.|||.+|.
T Consensus       437 ~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~---------GR~~d~Ik~~G~~V~p~eIE~~l~  506 (631)
T PRK07769        437 EETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYIT---------GRVKDLVIIDGRNHYPQDLEYTAQ  506 (631)
T ss_pred             hHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEE---------cccccEEEECCeeeCHHHHHHHHH
Confidence            8775  21                 24899999999995 9999999         999999999999999999999999


Q ss_pred             C-Ccccccccccc
Q psy14311        184 G-ETKRSQSRKSI  195 (199)
Q Consensus       184 ~-~~~~~~~~~~~  195 (199)
                      + ||.|.++...+
T Consensus       507 ~~~p~v~~~~~av  519 (631)
T PRK07769        507 EATKALRTGYVAA  519 (631)
T ss_pred             hccccccCCcEEE
Confidence            6 89998754443

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.98  E-value=2.5e-32  Score=232.93  Aligned_cols=178  Identities=20%  Similarity=0.274  Sum_probs=143.8

Q ss_pred             cccchhHHHHHHHh-h--hhhccCCceeEEEEecCCCCHHHHHHHHHH---hCC---cEEeecccccCCCceeecccC--
Q psy14311          4 IYRRNSIWDKLVFK-K--VQEDMGGNLRLMLAGSAPLAGNVLTFLRCA---LGC---LVIEGYGQTECVAPITLTIQG--   72 (199)
Q Consensus         4 ~~~~P~~~~~l~~~-~--~~~~~~~slr~i~~~G~~~~~~~~~~~~~~---~~~---~i~~~yG~tE~~~~~~~~~~~--   72 (199)
                      ++.+|+++..++.. .  .....+++||.++++|++++++++++|.+.   +|.   .+++.||+||++..++.....  
T Consensus       248 ~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~  327 (525)
T PRK05851        248 LTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIG  327 (525)
T ss_pred             EEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCC
Confidence            34556665554422 1  122334789999999999999999998875   354   499999999998755543211  


Q ss_pred             -------------CccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceE
Q psy14311         73 -------------DYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVG  139 (199)
Q Consensus        73 -------------~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~  139 (199)
                                   ....+++|+|+++++++|+|++.+.+++.|+.|||+++|++++.|||++|+.+   .++||+|||++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~---~~~~~~TGDl~  404 (525)
T PRK05851        328 LRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID---PDDWFPTGDLG  404 (525)
T ss_pred             ceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC---CCCceeccceE
Confidence                         11346799999999999999665567999999999999999999999998754   47899999999


Q ss_pred             EEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccccc
Q psy14311        140 MWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKS  194 (199)
Q Consensus       140 ~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~~  194 (199)
                      +.| +|+++|+         ||.+|+||.+|++|+|.|||++|.+||.|.++...
T Consensus       405 ~~~-~G~l~~~---------GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv  449 (525)
T PRK05851        405 YLV-DGGLVVC---------GRAKELITVAGRNIFPTEIERVAAQVRGVREGAVV  449 (525)
T ss_pred             EEE-CCEEEEE---------eecCCEEEECCEEeCHHHHHHHHHhCCCcccceEE
Confidence            997 7999999         99999999999999999999999999999875443

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.98  E-value=5.1e-32  Score=229.37  Aligned_cols=181  Identities=24%  Similarity=0.326  Sum_probs=158.6

Q ss_pred             ccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      .+..+|+++..++.... .....+++|.+++||+++++++++.|.+.++.++++.||+||++..............++|.
T Consensus       246 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~  325 (504)
T PRK07514        246 VMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGF  325 (504)
T ss_pred             eeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCccccc
Confidence            45678999988875532 23345789999999999999999999999999999999999998755443333334578999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      |+++++++++|++++++++.|+.|||++++++++.||+++++.+.  +..++||+|||+++++++|++++.         
T Consensus       326 ~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~---------  396 (504)
T PRK07514        326 PLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIV---------  396 (504)
T ss_pred             CCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEe---------
Confidence            999999999998999999999999999999999999999998877  556889999999999999999999         


Q ss_pred             eecCeEEEecceecccccccccccCCccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      ||.+|+|+.+|.+|+|.|||.++..+|.|.++.
T Consensus       397 GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~  429 (504)
T PRK07514        397 GRGKDLIISGGYNVYPKEVEGEIDELPGVVESA  429 (504)
T ss_pred             ccccceEEeCCeEECHHHHHHHHHhCCCeeEEE
Confidence            999999999999999999999999999887664

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.98  E-value=1e-31  Score=229.72  Aligned_cols=180  Identities=22%  Similarity=0.255  Sum_probs=155.1

Q ss_pred             cccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC--ccCCCCC
Q psy14311          4 IYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD--YVPEHVG   80 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--~~~~~~G   80 (199)
                      +.++|+++..+..... .....+++|.++++|+++++++.+++.+.+++.+++.||+||++.+.+......  ....++|
T Consensus       288 ~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G  367 (538)
T TIGR03208       288 TMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDG  367 (538)
T ss_pred             EecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhccCccc
Confidence            4578899888775322 223457899999999999999999999988999999999999987665443221  1245789


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEee
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYT  160 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~g  160 (199)
                      +|+++++++++| +++++++.|+.|||+++|+.++.||+++|+.+....++||+|||++++|++|+++++         |
T Consensus       368 ~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~---------g  437 (538)
T TIGR03208       368 RPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDAEGYIRIN---------G  437 (538)
T ss_pred             ccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCcccccccCCCceeccceEEECCCCcEEEE---------e
Confidence            999999999999 778999999999999999999999999998876556899999999999999999999         9


Q ss_pred             ecCeEEEecceecccccccccccCCcccccccc
Q psy14311        161 RIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       161 R~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |.+|+|+.+|++|+|.|||++|.+||.|.++..
T Consensus       438 R~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v  470 (538)
T TIGR03208       438 RSKDVIIRGGENIPVVEIENLLYQHPAVAQVAI  470 (538)
T ss_pred             ccCceEEECCEEECHHHHHHHHhcCcceeeEEE
Confidence            999999999999999999999999999986543

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PLN02246 4-coumarate--CoA ligase

Probab=99.98  E-value=7.4e-32  Score=230.47  Aligned_cols=182  Identities=23%  Similarity=0.358  Sum_probs=157.2

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeeccc-----CCcc
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQ-----GDYV   75 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~-----~~~~   75 (199)
                      .++++|+++..|.+.... ...++++|.++++|+++++++.+.+++++ +..+++.||+||++.+++....     ....
T Consensus       275 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  354 (537)
T PLN02246        275 IAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVK  354 (537)
T ss_pred             EEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCcccc
Confidence            456889999988754322 23347899999999999999999999998 6789999999999875543211     1224


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeee
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPML  153 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~  153 (199)
                      ++++|+|+++++++++|++++++++.|+.|||+++|+.++.||+++|+.+.  +..++||+|||+++++++|++++.   
T Consensus       355 ~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~---  431 (537)
T PLN02246        355 SGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIV---  431 (537)
T ss_pred             CCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEE---
Confidence            578999999999999998889999999999999999999999999998877  556899999999999999999999   


Q ss_pred             eeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        154 VIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       154 ~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                            ||.+|+|+.+|.+|+|.|||++|.+||.|.++..
T Consensus       432 ------GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v  465 (537)
T PLN02246        432 ------DRLKELIKYKGFQVAPAELEALLISHPSIADAAV  465 (537)
T ss_pred             ------ecccceEEECCEEECcHHHHHHHHhCCCeeEEEE
Confidence                  9999999999999999999999999999876543

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.98  E-value=5e-32  Score=228.93  Aligned_cols=180  Identities=20%  Similarity=0.282  Sum_probs=156.3

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc--CCccCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ--GDYVPEHV   79 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~--~~~~~~~~   79 (199)
                      .++++|++++.|+..... ...++++|.+++||+++++++.+.+++. ++++++.||+||++..++....  .....+++
T Consensus       241 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  319 (496)
T PRK06839        241 VVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSI  319 (496)
T ss_pred             EEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCC
Confidence            467889999999865433 2345789999999999999999999887 9999999999999875543322  22356789


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      |+|+++++++++| ++++.++.|+.|||++++++++.||+++|+.+. ...+|||+|||++++|++|++++.        
T Consensus       320 G~p~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~--------  390 (496)
T PRK06839        320 GKPVLFCDYELID-ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIV--------  390 (496)
T ss_pred             cccCCCceEEEEC-CCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEe--------
Confidence            9999999999999 666779999999999999999999999998877 556899999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                       ||.+|+|+.+|.+|+|.|||++|.+||.|.++..
T Consensus       391 -GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v  424 (496)
T PRK06839        391 -GRKKEMIISGGENIYPLEVEQVINKLSDVYEVAV  424 (496)
T ss_pred             -ccccceEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence             9999999999999999999999999999887543

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.98  E-value=8.5e-32  Score=227.45  Aligned_cols=177  Identities=18%  Similarity=0.245  Sum_probs=154.2

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeeccc-CCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQ-GDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~G   80 (199)
                      .++++|+++..|....   ....+.+.++++|++++++..+++++.+ ++.+++.||+||++.++..... ......++|
T Consensus       234 ~~~~~P~~~~~l~~~~---~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  310 (487)
T PRK07638        234 VMYTVPTMLESLYKEN---RVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG  310 (487)
T ss_pred             EEEeCcHHHHHHHhCc---CcCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence            4678999999988652   1234566678899999999999999988 6889999999999986655432 233567899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      +|+++++++++| ++++++++|+.|||+++++.++.||+++++.+. ...+|||+|||++++|++|++++.         
T Consensus       311 ~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~---------  380 (487)
T PRK07638        311 RPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIV---------  380 (487)
T ss_pred             cccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEE---------
Confidence            999999999999 789999999999999999999999999997666 566899999999999999999999         


Q ss_pred             eecCeEEEecceecccccccccccCCccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      ||.+|+|+.+|.+|+|.|||++|.+||.|.++.
T Consensus       381 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~  413 (487)
T PRK07638        381 GREKNMILFGGINIFPEEIESVLHEHPAVDEIV  413 (487)
T ss_pred             ecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEE
Confidence            999999999999999999999999999998654

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.98  E-value=6.8e-32  Score=235.87  Aligned_cols=166  Identities=33%  Similarity=0.578  Sum_probs=139.0

Q ss_pred             hhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCCCccccCcEEEEEeC-C
Q psy14311         17 KKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHVGPPICCCSVKLVDV-P   94 (199)
Q Consensus        17 ~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~v~d~-~   94 (199)
                      ...+.....++|.+++||+++++++.++++...++.+++.||+||+++.++..... ...++++|+|.+++++++.|. +
T Consensus       375 ~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~  454 (660)
T PLN02430        375 RKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPE  454 (660)
T ss_pred             HHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCC
Confidence            33334444789999999999999997766654347899999999998866655433 234689999999999999873 3


Q ss_pred             CC-cccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEe-cce
Q psy14311         95 EM-DYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRS-RSR  171 (199)
Q Consensus        95 ~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~-~g~  171 (199)
                      .+ .+++.+..|||+++||+++.|||++|+.+. ...+|||+|||+|++|+||+|+|.         ||.+|+|+. +|+
T Consensus       455 ~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~---------gR~kd~ik~~~G~  525 (660)
T PLN02430        455 MGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKII---------DRKKNLIKLSQGE  525 (660)
T ss_pred             cCcccCCCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEE---------EcccccEEcCCCc
Confidence            33 456666789999999999999999999987 446899999999999999999999         999999996 699


Q ss_pred             ecccccccccccCCcccccc
Q psy14311        172 HSLGKRVEGTVHGETKRSQS  191 (199)
Q Consensus       172 ~v~~~eiE~~l~~~~~~~~~  191 (199)
                      +|+|.+||++|.+||.|.+.
T Consensus       526 ~V~p~~IE~~l~~~p~V~~~  545 (660)
T PLN02430        526 YVALEYLENVYGQNPIVEDI  545 (660)
T ss_pred             EEchHHHHHHHhcCCCeeEE
Confidence            99999999999999999865

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.97  E-value=7.7e-32  Score=227.70  Aligned_cols=180  Identities=17%  Similarity=0.251  Sum_probs=153.2

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc---CCccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ---GDYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~---~~~~~~~   78 (199)
                      .++.+|++++.+...+.. ...++++|.+++||++++.+..+.+.+. ++++++.||+||++.++.....   ....+++
T Consensus       229 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~  307 (488)
T PRK09088        229 HYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGA  307 (488)
T ss_pred             EEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCc
Confidence            456789999888765432 2344789999999999999888877765 8999999999999875432211   1225578


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIM  156 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~  156 (199)
                      +|.|.++++++++| +++++++.|+.|||++++++++.||+++++.+.  +..+|||+|||++++|++|++++.      
T Consensus       308 vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~------  380 (488)
T PRK09088        308 AGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVV------  380 (488)
T ss_pred             cccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEe------
Confidence            99999999999999 778999999999999999999999999998876  556899999999999999999999      


Q ss_pred             eEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                         ||.+|+|+.+|.+++|.|||++|..||.|.+...
T Consensus       381 ---GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v  414 (488)
T PRK09088        381 ---DRKKDMFISGGENVYPAEIEAVLADHPGIRECAV  414 (488)
T ss_pred             ---ccccceEEeCCEEECHHHHHHHHHhCCCcceEEE
Confidence               9999999999999999999999999999875443

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.97  E-value=8.1e-32  Score=230.72  Aligned_cols=182  Identities=26%  Similarity=0.294  Sum_probs=155.8

Q ss_pred             ccccchhHHHHHHHhhhhh-ccCC--ceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC-----C
Q psy14311          3 GIYRRNSIWDKLVFKKVQE-DMGG--NLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG-----D   73 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~-~~~~--slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-----~   73 (199)
                      .+.++|+++..++...... ....  ++|.++++|+++++++++++.+.| ++++++.||+||++.+.......     .
T Consensus       278 ~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  357 (546)
T PLN02330        278 FAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGI  357 (546)
T ss_pred             eeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccc
Confidence            4567899999988653222 2222  579999999999999999999998 89999999999998655433211     1


Q ss_pred             ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEe
Q psy14311         74 YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIP  151 (199)
Q Consensus        74 ~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~  151 (199)
                      ....++|+|+++++++++|++++++++.|+.|||+++|+.++.||+++++.+.  +..++||+|||+++++++|++++. 
T Consensus       358 ~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~-  436 (546)
T PLN02330        358 AKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIV-  436 (546)
T ss_pred             cccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEE-
Confidence            23468999999999999998889999999999999999999999999998876  556899999999999999999999 


Q ss_pred             eeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                              ||.+|+|+.+|.+|+|.|||++|.+||.|.++..
T Consensus       437 --------GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  470 (546)
T PLN02330        437 --------DRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV  470 (546)
T ss_pred             --------echHHhhhcCCEEECHHHHHHHHHhCCchheEEE
Confidence                    9999999999999999999999999999986654

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=4.3e-32  Score=235.42  Aligned_cols=180  Identities=19%  Similarity=0.244  Sum_probs=146.3

Q ss_pred             ccccchhHHHHHHHhh-h----hhccCCceeEEEEecCCCCHHHHHHHHHHh---CC---cEEeecccccCCCceeeccc
Q psy14311          3 GIYRRNSIWDKLVFKK-V----QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL---GC---LVIEGYGQTECVAPITLTIQ   71 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~-~----~~~~~~slr~i~~~G~~~~~~~~~~~~~~~---~~---~i~~~yG~tE~~~~~~~~~~   71 (199)
                      .++.+|+++..++... .    ....++++| +++||+++++++.++|++.|   |+   .+++.||+||++..++....
T Consensus       291 ~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~  369 (612)
T PRK12476        291 VVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAP  369 (612)
T ss_pred             EEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCC
Confidence            4568888888776532 1    122457899 99999999999999999987   43   48999999998765443211


Q ss_pred             CC---------------------------ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcC
Q psy14311         72 GD---------------------------YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL  124 (199)
Q Consensus        72 ~~---------------------------~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~  124 (199)
                      ..                           ...+++|+|+++++++|+|++++++++.|+.|||+++|++++.|||++|+.
T Consensus       370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~  449 (612)
T PRK12476        370 DAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEE  449 (612)
T ss_pred             CCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHH
Confidence            10                           012478999999999999965599999999999999999999999999988


Q ss_pred             CC--CC------------------CCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccC
Q psy14311        125 NS--ID------------------ELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHG  184 (199)
Q Consensus       125 ~~--~~------------------~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~  184 (199)
                      +.  +.                  .++||+|||+|+++ +|+|+|+         ||++|+||.+|++|+|.|||++|.+
T Consensus       450 t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~---------GR~~d~I~~~G~~I~p~eIE~~l~~  519 (612)
T PRK12476        450 TERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYIT---------GRIADLIVIDGRNHYPQDIEATVAE  519 (612)
T ss_pred             HHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEE---------eccCcEEEECCcccCHHHHHHHHHH
Confidence            75  21                  23599999999985 9999999         9999999999999999999999985


Q ss_pred             -Ccccccccc
Q psy14311        185 -ETKRSQSRK  193 (199)
Q Consensus       185 -~~~~~~~~~  193 (199)
                       ||.|.++..
T Consensus       520 ~~p~V~~~~v  529 (612)
T PRK12476        520 ASPMVRRGYV  529 (612)
T ss_pred             hcccccCCcE
Confidence             899987433

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.97  E-value=1.7e-31  Score=233.25  Aligned_cols=180  Identities=12%  Similarity=-0.021  Sum_probs=151.2

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHh--CCcEEeecccccCCCceeec-ccCCccC
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTECVAPITLT-IQGDYVP   76 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~-~~~~~~~   76 (199)
                      .+..+|++++.+.....   ....+++||.++++|+++++++++++.+.+  ++.+.+.||+||++..+... ......+
T Consensus       358 ~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~  437 (655)
T PRK03584        358 VFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYR  437 (655)
T ss_pred             EEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCC
Confidence            46688999998875432   224457899999999999999999999988  47899999999986543322 2223456


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecC--cccccccCCCcCCC------CCCCCeeecCceEEEcCCCeEE
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN--NVFLGYFKDPELNS------IDELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~--~~~~gy~~~~~~~~------~~~~g~~~TGD~~~~d~~g~l~  148 (199)
                      +++|.|.++++++|+| ++|+++ .|+.|||++++|  +++.|||++++.++      ...++||+|||++++|+||+++
T Consensus       438 g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~  515 (655)
T PRK03584        438 GEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVV  515 (655)
T ss_pred             CccCCCcCCceeEEEC-CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEE
Confidence            8899999999999999 778888 799999999986  79999999998654      1236899999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+         ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       516 i~---------GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~v  551 (655)
T PRK03584        516 IY---------GRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLV  551 (655)
T ss_pred             EE---------eeccCeeecCcEEECHHHHHHHHHhCCCcceEEE
Confidence            99         9999999999999999999999999999987644

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.97  E-value=2.3e-31  Score=227.02  Aligned_cols=181  Identities=19%  Similarity=0.241  Sum_probs=153.9

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecc-cCCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTI-QGDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~-~~~~~~~~~G   80 (199)
                      .++++|+++..++..... ....+++|.+++||+++++++++++.+.+++.+++.||+||++....... ......+++|
T Consensus       276 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  355 (527)
T TIGR02275       276 VTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQG  355 (527)
T ss_pred             EEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCC
Confidence            456789999888754322 23447899999999999999999999999999999999999764332211 1122346899


Q ss_pred             cccc-CcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         81 PPIC-CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        81 ~p~~-~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      +|++ +.+++++| +++++++.|+.|||+++|+.++.||+++++.+.  +..++||+|||++++|++|++++.       
T Consensus       356 ~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~-------  427 (527)
T TIGR02275       356 RPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVV-------  427 (527)
T ss_pred             CCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEE-------
Confidence            9994 89999999 778999999999999999999999999998876  667899999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                        ||.+|+|+.+|.+|+|.|||++|..||.|.++..
T Consensus       428 --gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v  461 (527)
T TIGR02275       428 --GRAKDQINRGGEKIAAEEIENLLLAHPAVHDAAL  461 (527)
T ss_pred             --ecccceeecCCEEECHHHHHHHHHhCCCceEEEE
Confidence              9999999999999999999999999999986543

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.3e-31  Score=225.57  Aligned_cols=181  Identities=25%  Similarity=0.382  Sum_probs=158.1

Q ss_pred             ccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCC-cEEeecccccCCCceeecccCCc---cCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGDY---VPE   77 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~---~~~   77 (199)
                      .++++|+++..|+...... ...+++|.++++|+++++++++++.+.++. .+++.||+||+++++..+.....   .++
T Consensus       258 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  337 (513)
T PRK07656        258 VLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAG  337 (513)
T ss_pred             EEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCC
Confidence            3578899999988654333 245789999999999999999999999988 89999999999887665543322   257


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      ++|.|+++++++++| +++++++.|+.|||+++++.++.||+++++.+.  +..++||+|||+++++++|++++.     
T Consensus       338 ~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~-----  411 (513)
T PRK07656        338 TIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV-----  411 (513)
T ss_pred             CccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE-----
Confidence            899999999999999 778999999999999999999999999988776  445899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                          ||.+|+|+.+|.+++|.+||++|..||.|.++..
T Consensus       412 ----GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v  445 (513)
T PRK07656        412 ----DRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAV  445 (513)
T ss_pred             ----ecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEE
Confidence                9999999999999999999999999999876543

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.5e-31  Score=227.57  Aligned_cols=181  Identities=19%  Similarity=0.205  Sum_probs=149.1

Q ss_pred             CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-----Ccc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-----DYV   75 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-----~~~   75 (199)
                      +.++++|+++..|+..... ....+++|.++++|++++....++ .+.+++++++.||+||++.........     ...
T Consensus       262 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~-~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~  340 (540)
T PRK05857        262 ATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRF-IEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIE  340 (540)
T ss_pred             ceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHH-HHHhCCeeecccCCCcCCceeeecccccccccccc
Confidence            3467899999998865422 234588999999999998877754 456799999999999998654432221     124


Q ss_pred             CCCCCccccCcEEEEEeCCCCccc-----CCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEE
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYF-----AHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFF  149 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~-----~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~  149 (199)
                      ++++|+|+++++++++|++...++     +.|+.|||+++|++++.||+++++.+. ...+|||+|||++++|++|++++
T Consensus       341 ~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~  420 (540)
T PRK05857        341 AGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYI  420 (540)
T ss_pred             cCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEEE
Confidence            578999999999999994433333     347889999999999999999999887 45689999999999999999999


Q ss_pred             EeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      .         ||.+|+|+++|.+|+|.|||.+|..||.|.++.
T Consensus       421 ~---------GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~  454 (540)
T PRK05857        421 K---------GRSSEMIICGGVNIAPDEVDRIAEGVSGVREAA  454 (540)
T ss_pred             e---------ccccccEecCCEEECHHHHHHHHHhCCCeeEEE
Confidence            9         999999999999999999999999999998653

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.8e-31  Score=227.89  Aligned_cols=179  Identities=23%  Similarity=0.294  Sum_probs=152.3

Q ss_pred             CccccchhHHHHHHHhhhhh---ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-----C
Q psy14311          2 KGIYRRNSIWDKLVFKKVQE---DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-----D   73 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~---~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-----~   73 (199)
                      +.++++|+++..|.+.....   ...+++|.++++|+++++++++++.+.+++.+++.||+||++..++.....     .
T Consensus       269 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~  348 (534)
T PRK05852        269 TWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTE  348 (534)
T ss_pred             cEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccccccc
Confidence            35678999999988654222   234789999999999999999999999999999999999998755533211     1


Q ss_pred             ---ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEE
Q psy14311         74 ---YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFF  149 (199)
Q Consensus        74 ---~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~  149 (199)
                         ...+.+|. .++++++++| ++++++++|+.|||+++|+.++.||+++|+.+. ...++||+|||++++|++|++++
T Consensus       349 ~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~  426 (534)
T PRK05852        349 NPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSI  426 (534)
T ss_pred             CcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCcEEE
Confidence               12234444 6999999999 678999999999999999999999999999887 45678999999999999999999


Q ss_pred             EeeeeeeeEeeecCeEEEecceecccccccccccCCcccccc
Q psy14311        150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQS  191 (199)
Q Consensus       150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~  191 (199)
                      .         ||.+|+|+.+|.+|+|.|||++|.+||.|.+.
T Consensus       427 ~---------gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~  459 (534)
T PRK05852        427 R---------GRIKELINRGGEKISPERVEGVLASHPNVMEA  459 (534)
T ss_pred             E---------ecchhhEEECCEEECHHHHHHHHHhCCCeeeE
Confidence            9         99999999999999999999999999998764

>PRK08315 AMP-binding domain protein; Validated

Probab=99.97  E-value=2.7e-31  Score=227.80  Aligned_cols=181  Identities=23%  Similarity=0.284  Sum_probs=156.2

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCc-EEeecccccCCCceeecccC---CccCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQG---DYVPE   77 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~---~~~~~   77 (199)
                      .++++|+++..++..... ....+++|.++++|+++++++++.+.+.++.. +++.||+||++.+++.....   .....
T Consensus       292 ~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~  371 (559)
T PRK08315        292 ALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVT  371 (559)
T ss_pred             EEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccC
Confidence            457889999888754322 23457899999999999999999999988754 99999999998866554332   12467


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      ++|+|+++++++++|++++++++.|+.|||+++|++++.||+++|+.+.  +..++||+|||++++|++|++++.     
T Consensus       372 ~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~-----  446 (559)
T PRK08315        372 TVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIV-----  446 (559)
T ss_pred             CCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEE-----
Confidence            8999999999999997769999999999999999999999999998776  446899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                          ||.+++|+.+|.+|+|.|||++|..+|.|.+..
T Consensus       447 ----GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~  479 (559)
T PRK08315        447 ----GRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQ  479 (559)
T ss_pred             ----eeccceEEECCEEEcHHHHHHHHHhCCCceEEE
Confidence                999999999999999999999999999987654

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.97  E-value=4e-31  Score=218.15  Aligned_cols=177  Identities=22%  Similarity=0.253  Sum_probs=153.1

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecccCCc-----cC
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQGDY-----VP   76 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~~~-----~~   76 (199)
                      .++++|++++.|+....  ..++++|.++++|+++++++++.+.+.++ +.+++.||+||++.++........     .+
T Consensus       214 ~l~~~p~~~~~l~~~~~--~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~  291 (408)
T TIGR01733       214 VLNLTPSLLALLAAALP--PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESP  291 (408)
T ss_pred             EEEeCHHHHHHHHHhhh--hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccc
Confidence            56789999999886643  45678999999999999999999999997 899999999999886653322111     16


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC------CCC--eeecCceEEEcCCCe
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID------ELG--WHHTGDVGMWLPTLF  146 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~------~~g--~~~TGD~~~~d~~g~  146 (199)
                      .++|.|+++++++|+|++ +++++.|+.|||+++++.++.||+++++.+.  +.      .++  ||+|||++++|++|+
T Consensus       292 ~~~G~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~  370 (408)
T TIGR01733       292 VPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGN  370 (408)
T ss_pred             cccCcccCCceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCC
Confidence            779999999999999954 8999999999999999999999999988765  11      123  999999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQS  191 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~  191 (199)
                      +++.         ||.+|+|+.+|++++|.|||++|..||.|.++
T Consensus       371 ~~~~---------gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~  406 (408)
T TIGR01733       371 LEFL---------GRIDDQVKIRGYRIELGEIEAALLRHPGVREA  406 (408)
T ss_pred             EEEe---------eccCCEEEeCeEEechHHHHHHHhcCcchhhh
Confidence            9999         99999999999999999999999999998764

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.97  E-value=3.7e-31  Score=226.25  Aligned_cols=180  Identities=18%  Similarity=0.226  Sum_probs=154.3

Q ss_pred             ccccchhHHHHHHHhh---hhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc-CCccCCC
Q psy14311          3 GIYRRNSIWDKLVFKK---VQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ-GDYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~---~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~   78 (199)
                      .+.++|+++..|+...   ......+++|.+++||+++++++.+.+.+.+++++++.||+||+......... ......+
T Consensus       275 ~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  354 (536)
T PRK10946        275 VTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTT  354 (536)
T ss_pred             EEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccccccc
Confidence            3567899999887542   12233478999999999999999999999899999999999997644332211 1224578


Q ss_pred             CCccc-cCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         79 VGPPI-CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        79 ~G~p~-~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      +|+|+ +++.++++| +++++++.|+.|||+++|+.++.||+++++.+.  +..++||+|||++++|++|++++.     
T Consensus       355 ~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~-----  428 (536)
T PRK10946        355 QGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVV-----  428 (536)
T ss_pred             CCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEe-----
Confidence            99998 789999999 789999999999999999999999999998877  567899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                          ||.+|+|+.+|.+|+|.|||.+|..||.|.+..
T Consensus       429 ----gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~  461 (536)
T PRK10946        429 ----GREKDQINRGGEKIAAEEIENLLLRHPAVIHAA  461 (536)
T ss_pred             ----ccccceeecCCEEEcHHHHHHHHHhCCCcceEE
Confidence                999999999999999999999999999998755

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.97  E-value=3.8e-31  Score=233.25  Aligned_cols=175  Identities=21%  Similarity=0.284  Sum_probs=145.1

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCcc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP   82 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p   82 (199)
                      .++.+|+++..+.... ....+++||.+++||+++++++.+.|++.+++++++.||+||++..++.........+++|+|
T Consensus       458 ~~~~~p~~~~~l~~~~-~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p  536 (718)
T PRK08043        458 VLFGTSTFLGNYARFA-NPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRI  536 (718)
T ss_pred             EEEchHHHHHHhhhhc-CcccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCCCc
Confidence            4567888888765431 233457899999999999999999999999999999999999987665544334467899999


Q ss_pred             ccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccC--CCcCC-------C--CCCCCeeecCceEEEcCCCeEEEEe
Q psy14311         83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFK--DPELN-------S--IDELGWHHTGDVGMWLPTLFFFFIP  151 (199)
Q Consensus        83 ~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~--~~~~~-------~--~~~~g~~~TGD~~~~d~~g~l~~~~  151 (199)
                      +|+++++++| +++.    ++.|||+++|++++.|||+  +|+.+       .  ...+|||+|||++++|+||+++++ 
T Consensus       537 ~pg~~~~i~d-~~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~-  610 (718)
T PRK08043        537 LPGMDARLLS-VPGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQ-  610 (718)
T ss_pred             CCCCeeEEec-CCCC----CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEE-
Confidence            9999999998 4432    4569999999999999998  44421       1  234799999999999999999999 


Q ss_pred             eeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                              ||.+|+|+.+|++|+|.|||+++.+|+.+.+..
T Consensus       611 --------GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~a  643 (718)
T PRK08043        611 --------GRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHA  643 (718)
T ss_pred             --------ecCCCeeEeCcEEcCHHHHHHHHHhCCccceEE
Confidence                    999999999999999999999999998776543

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.8e-31  Score=225.77  Aligned_cols=181  Identities=20%  Similarity=0.263  Sum_probs=156.0

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC--CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG--DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~--~~~~~~   78 (199)
                      .++++|++++.++..... ....+++|.+++||+++++++++++.+.| +..+++.||+||++..++.....  ....++
T Consensus       241 ~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  320 (497)
T PRK06145        241 CAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGS  320 (497)
T ss_pred             EEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCC
Confidence            467899999998865322 23347899999999999999999999988 57899999999999865543321  224578


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      +|+|+++++++++| +++++++.|+.|||+++|++++.||+++++.+. ...++||+|||++++|++|+++++       
T Consensus       321 ~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~-------  392 (497)
T PRK06145        321 TGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLT-------  392 (497)
T ss_pred             cccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEe-------
Confidence            99999999999999 678899999999999999999999999998876 445789999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                        ||.+|+|+.+|.+++|.+||++|..||.|.++..
T Consensus       393 --GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v  426 (497)
T PRK06145        393 --DRKKDMIISGGENIASSEVERVIYELPEVAEAAV  426 (497)
T ss_pred             --ccccceEEeCCeEECHHHHHHHHHhCCCeeEEEE
Confidence              9999999999999999999999999999876543

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.2e-31  Score=228.50  Aligned_cols=181  Identities=20%  Similarity=0.264  Sum_probs=157.3

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~G   80 (199)
                      .+..+|+++..+...... ....+++|.++.||+++++.+.+.|.+.+++++++.||+||++.+++..... ...++++|
T Consensus       304 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG  383 (557)
T PRK07059        304 IFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIG  383 (557)
T ss_pred             eeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCccc
Confidence            456788888888765322 2334789999999999999999999998999999999999998866544332 23457899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +|+++++++++| +++++++.|+.|||+++|+.++.||+++++.+.  +..+|||+|||+++++++|++++.        
T Consensus       384 ~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~--------  454 (557)
T PRK07059        384 LPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIV--------  454 (557)
T ss_pred             CccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEe--------
Confidence            999999999999 788999999999999999999999999998776  556899999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                       ||.+|+|+.+|.+|+|.|||++|..||.|.+...
T Consensus       455 -GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v  488 (557)
T PRK07059        455 -DRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAA  488 (557)
T ss_pred             -cccccceEECCEEEcHHHHHHHHHhCCceeEEEE
Confidence             9999999999999999999999999999987543

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.5e-31  Score=227.98  Aligned_cols=179  Identities=23%  Similarity=0.306  Sum_probs=155.5

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc--------CC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ--------GD   73 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~--------~~   73 (199)
                      .+.++|++++.+...... ....+++|.++++|++++++..+++.+.++..+++.||+||+++.+.....        ..
T Consensus       257 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  336 (528)
T PRK07470        257 NLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPD  336 (528)
T ss_pred             EEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccccccc
Confidence            457899999988865432 234578999999999999999999988889999999999999876554321        11


Q ss_pred             ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEee
Q psy14311         74 YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPM  152 (199)
Q Consensus        74 ~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r  152 (199)
                      ...+++|.|+++++++++| +++++++.|+.|||+++++.++.||+++++.+. ...++||+|||++++|++|++++.  
T Consensus       337 ~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~--  413 (528)
T PRK07470        337 ARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYIT--  413 (528)
T ss_pred             ceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEe--
Confidence            2347899999999999999 789999999999999999999999999998876 556899999999999999999999  


Q ss_pred             eeeeeEeeecCeEEEecceecccccccccccCCcccccc
Q psy14311        153 LVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQS  191 (199)
Q Consensus       153 ~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~  191 (199)
                             ||.+|+|+++|.+|+|.+||.+|.++|.|.+.
T Consensus       414 -------GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~  445 (528)
T PRK07470        414 -------GRASDMYISGGSNVYPREIEEKLLTHPAVSEV  445 (528)
T ss_pred             -------CCccceEEeCCEEECHHHHHHHHHhCCCceEE
Confidence                   99999999999999999999999999988754

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=4e-31  Score=224.05  Aligned_cols=180  Identities=17%  Similarity=0.192  Sum_probs=153.9

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~   78 (199)
                      .+.++|+++..|+....   .....+++|.++++|+++++++.+.+++.++..+++.||+||+++++...... ....++
T Consensus       245 ~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  324 (501)
T PRK13390        245 VTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGS  324 (501)
T ss_pred             EEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCC
Confidence            45678999988875432   22334789999999999999999999998899999999999998755443321 234578


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC--CCCeeecCceEEEcCCCeEEEEeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID--ELGWHHTGDVGMWLPTLFFFFIPMLV  154 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~--~~g~~~TGD~~~~d~~g~l~~~~r~~  154 (199)
                      +|+|+++ .++++| +++++++.|+.|||++++++++.||+++|+.+.  +.  .++|++|||++++|++|++++.    
T Consensus       325 ~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~----  398 (501)
T PRK13390        325 VGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLA----  398 (501)
T ss_pred             cCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEe----
Confidence            9999999 799999 789999999999999999999999999999876  22  3689999999999999999999    


Q ss_pred             eeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        155 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       155 ~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                           ||.+++|+.+|.+|+|.|||++|..||.|.++..
T Consensus       399 -----gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v  432 (501)
T PRK13390        399 -----DRKSFMIISGGVNIYPQETENALTMHPAVHDVAV  432 (501)
T ss_pred             -----eccccceeECCeeeCHHHHHHHHHhCCCeeEEEE
Confidence                 9999999999999999999999999999886643

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.97  E-value=3.7e-31  Score=245.64  Aligned_cols=180  Identities=17%  Similarity=0.212  Sum_probs=155.3

Q ss_pred             ccccchhHHHHHHHhhhhh---ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-------
Q psy14311          3 GIYRRNSIWDKLVFKKVQE---DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-------   72 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~---~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-------   72 (199)
                      .+.++|+++..++......   ..+.++|.+++||+++++++.+.|.+.++++++|.||+||++..++.....       
T Consensus       692 ~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~  771 (1296)
T PRK10252        692 TTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAV  771 (1296)
T ss_pred             EEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeeccccccccc
Confidence            4568999999887553222   234789999999999999999999998899999999999998766544321       


Q ss_pred             CccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC------CCCeeecCceEEEcCC
Q psy14311         73 DYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID------ELGWHHTGDVGMWLPT  144 (199)
Q Consensus        73 ~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~------~~g~~~TGD~~~~d~~  144 (199)
                      .....++|+|++++++.|+| +++++++.|+.|||+++|++++.||+++|+.+.  +.      .++||+|||+++++++
T Consensus       772 ~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~  850 (1296)
T PRK10252        772 RGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDD  850 (1296)
T ss_pred             CCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCC
Confidence            12346799999999999999 889999999999999999999999999999886  22      2359999999999999


Q ss_pred             CeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        145 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       145 g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      |++++.         ||.|++||.+|++|+|.|||.+|.+||.|.++.
T Consensus       851 G~l~~~---------GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~  889 (1296)
T PRK10252        851 GAVEYL---------GRSDDQLKIRGQRIELGEIDRAMQALPDVEQAV  889 (1296)
T ss_pred             CcEEEe---------cccCCeEEEeeEEecHHHHHHHHHhCccccceE
Confidence            999999         999999999999999999999999999998774

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.97  E-value=3.8e-31  Score=246.99  Aligned_cols=179  Identities=16%  Similarity=0.091  Sum_probs=150.9

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCC--------
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGD--------   73 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~--------   73 (199)
                      .++++|++++.|....  ....++||.++++|++++++..+.+.+.+ ++.+++.||+||++..++......        
T Consensus       509 ~~~~~Ps~~~~l~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~  586 (1389)
T TIGR03443       509 VTHLTPAMGQLLSAQA--TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFL  586 (1389)
T ss_pred             EEEeCHHHHHHHHhcc--cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchh
Confidence            4568999998886432  23457899999999999999999888765 688999999999987655432110        


Q ss_pred             ---ccCCCCCccccCcEEEEEeCC-CCcccCCCCcceEEEecCcccccccCCCcCCC--CC-------------------
Q psy14311         74 ---YVPEHVGPPICCCSVKLVDVP-EMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID-------------------  128 (199)
Q Consensus        74 ---~~~~~~G~p~~~~~~~v~d~~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~-------------------  128 (199)
                         ....++|+|+++++++|+|++ .+++++.|+.|||+|+||+++.||+++|+.+.  +.                   
T Consensus       587 ~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~  666 (1389)
T TIGR03443       587 KNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNK  666 (1389)
T ss_pred             hcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCccccccccccccc
Confidence               123578999999999999954 35889999999999999999999999998876  21                   


Q ss_pred             ---------CCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        129 ---------ELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       129 ---------~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                               .++||+|||+|++++||+++|+         ||.||+||++|++|+|.|||.+|.+||.|.++.
T Consensus       667 ~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~---------GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~  730 (1389)
T TIGR03443       667 PEREFWLGPRDRLYRTGDLGRYLPDGNVECC---------GRADDQVKIRGFRIELGEIDTHLSQHPLVRENV  730 (1389)
T ss_pred             ccccccCCCccceeecCCceeEcCCCCEEEe---------cccCCEEEeCcEEecHHHHHHHHHhCcchheeE
Confidence                     2579999999999999999999         999999999999999999999999999997654

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=3.2e-31  Score=227.69  Aligned_cols=182  Identities=24%  Similarity=0.329  Sum_probs=158.0

Q ss_pred             ccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc-CCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ-GDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~G   80 (199)
                      .+.++|+++..++...... ..++++|.++++|+++++++.+++.+.+++.+++.||+||++..+..... ....++++|
T Consensus       300 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  379 (563)
T PRK06710        300 LFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIG  379 (563)
T ss_pred             EEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcccccccCCccC
Confidence            4678999999887653322 23478999999999999999999999889999999999999875443322 223457899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      +|++++.++++|++++++++.|+.|||+++|+.++.||+++++.+. ...++||+|||++++|++|++++.         
T Consensus       380 ~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~~---------  450 (563)
T PRK06710        380 VPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVK---------  450 (563)
T ss_pred             CCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcCCCcEEEe---------
Confidence            9999999999998889999999999999999999999999998877 556899999999999999999999         


Q ss_pred             eecCeEEEecceecccccccccccCCcccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ||.+|+|+.+|.+|+|.|||++|.+||.|.++..
T Consensus       451 GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v  484 (563)
T PRK06710        451 DRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVT  484 (563)
T ss_pred             eccccEEEECCEEECHHHHHHHHHhCcceeeEEE
Confidence            9999999999999999999999999999987643

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.97  E-value=4.3e-31  Score=218.80  Aligned_cols=159  Identities=30%  Similarity=0.473  Sum_probs=136.0

Q ss_pred             CccccchhHHHHHHHhhhh-----hccCCceeEEEEecCCCCHHHHHHHHHHhCC-cEEeecccccCCCceeeccc--CC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-----EDMGGNLRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQ--GD   73 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-----~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~--~~   73 (199)
                      +.++++|+++..|++....     ...++++|.++++|+++++++.+.+++.++. +|++.||+||++.+++....  ..
T Consensus       249 t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~  328 (417)
T PF00501_consen  249 TILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDI  328 (417)
T ss_dssp             SEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecccccccceeeecccccccc
Confidence            3568899999999873322     1355779999999999999999999999987 99999999999998875532  22


Q ss_pred             ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEe
Q psy14311         74 YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIP  151 (199)
Q Consensus        74 ~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~  151 (199)
                      ...+++|.|+++++++|+|++++++++.|+.|||+++||.++.||+++|+.+.  +..+|||+|||+|++|++|+++++ 
T Consensus       329 ~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~-  407 (417)
T PF00501_consen  329 EKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYIL-  407 (417)
T ss_dssp             SSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEE-
T ss_pred             cccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEE-
Confidence            36678999999999999997779999999999999999999999999988776  444589999999999999999999 


Q ss_pred             eeeeeeEeeecCeEEEec
Q psy14311        152 MLVIMLMYTRIGLRIRSR  169 (199)
Q Consensus       152 r~~~~~~~gR~~~~i~~~  169 (199)
                              ||.+|+||++
T Consensus       408 --------GR~~~~i~~~  417 (417)
T PF00501_consen  408 --------GRSDDMIKVR  417 (417)
T ss_dssp             --------EEGSCEEEET
T ss_pred             --------EeeCCEEEeC
Confidence                    9999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=3.4e-31  Score=227.95  Aligned_cols=182  Identities=24%  Similarity=0.307  Sum_probs=157.9

Q ss_pred             ccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~G   80 (199)
                      .+.++|++++.|+...... ..++++|.++++|+++++++.+.+.+.++..+++.||+||+++++...... ...++++|
T Consensus       313 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G  392 (573)
T PRK05605        313 WLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVG  392 (573)
T ss_pred             EEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccc
Confidence            4568999999988654332 344789999999999999999999998899999999999998866544332 23467899


Q ss_pred             ccccCcEEEEEeCCC-CcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPE-MDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +|++++.++++|+++ +++++.|+.|||+++++.++.||+++++.+. ...+|||+|||++++|++|++++.        
T Consensus       393 ~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~--------  464 (573)
T PRK05605        393 VPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIV--------  464 (573)
T ss_pred             cCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCcEEEE--------
Confidence            999999999999666 6899999999999999999999999998877 445679999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                       ||.+|+|+.+|.+|+|.|||+++..||.|.++..
T Consensus       465 -gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v  498 (573)
T PRK05605        465 -DRIKELIITGGFNVYPAEVEEVLREHPGVEDAAV  498 (573)
T ss_pred             -eccccceeeCCEEECHHHHHHHHHhCcccceEEE
Confidence             9999999999999999999999999999886544

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.97  E-value=6e-31  Score=225.82  Aligned_cols=180  Identities=21%  Similarity=0.301  Sum_probs=156.2

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~G   80 (199)
                      .+..+|+++..++..... ...++++|.+++||+++++.+.+.|++.+++.+++.||+||++..+...... ....+++|
T Consensus       306 ~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG  385 (560)
T PRK08751        306 AFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIG  385 (560)
T ss_pred             EecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcC
Confidence            356788888888764322 2334789999999999999999999998899999999999998766544322 23457899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      .|+++++++++| +++++++.|+.|||+++++.++.||+++|+.+.  +..+|||+|||++++|++|++++.        
T Consensus       386 ~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~--------  456 (560)
T PRK08751        386 LPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIV--------  456 (560)
T ss_pred             ccCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEE--------
Confidence            999999999999 788999999999999999999999999998876  556799999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                       ||.+|+|+.+|.+|+|.|||.+|..||.|.++.
T Consensus       457 -GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~  489 (560)
T PRK08751        457 -DRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVA  489 (560)
T ss_pred             -eechhheeECCEEEcHHHHHHHHHhCcCeeeeE
Confidence             999999999999999999999999999997654

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.97  E-value=5e-31  Score=223.85  Aligned_cols=181  Identities=15%  Similarity=0.174  Sum_probs=157.1

Q ss_pred             ccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      .++++|+++..++.... ......++|.++++|+++++++++.|.+.+++++++.||+||++.++..........+++|+
T Consensus       255 ~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~  334 (508)
T TIGR02262       255 IFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGK  334 (508)
T ss_pred             EEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCC
Confidence            46788988887764422 22334689999999999999999999999999999999999999765544333345678999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYT  160 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~g  160 (199)
                      |+++++++++| +++.+++.|+.|||++++++++.||+++|+.+. ...++||+|||+++++++|++++.         |
T Consensus       335 ~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~---------g  404 (508)
T TIGR02262       335 PVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYA---------G  404 (508)
T ss_pred             CCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEe---------c
Confidence            99999999999 889999999999999999999999999998876 446789999999999999999999         9


Q ss_pred             ecCeEEEecceecccccccccccCCcccccccc
Q psy14311        161 RIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       161 R~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |.+|+|+.+|.+++|.+||++|.+||.|.++..
T Consensus       405 R~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~  437 (508)
T TIGR02262       405 RTDDMLKVSGIYVSPFEIESALIQHPAVLEAAV  437 (508)
T ss_pred             cccceeeeCCEEECHHHHHHHHHhCCCeeEEEE
Confidence            999999999999999999999999999876543

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>KOG1175|consensus

Probab=99.97  E-value=2.4e-31  Score=224.91  Aligned_cols=182  Identities=18%  Similarity=0.218  Sum_probs=158.8

Q ss_pred             CccccchhHHHHHHHhh---hhhccCCceeEEEEecCCCCHHHHHHHHHHhCC-cEEeecccccCCCceeecccCC--cc
Q psy14311          2 KGIYRRNSIWDKLVFKK---VQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGD--YV   75 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~---~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~--~~   75 (199)
                      +.++..|+.++.|....   ......++||.+.++|+|+.++.++++++.++. +|.+.||+||++..+.......  .+
T Consensus       333 t~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~  412 (626)
T KOG1175|consen  333 TVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIK  412 (626)
T ss_pred             EEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcC
Confidence            35778999999766432   222222679999999999999999999999987 5999999999999888776655  68


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCC-CcceEEEec--C-cccccccCCCcCCC----CCCCCeeecCceEEEcCCCeE
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHE-GKGEVCVRG--N-NVFLGYFKDPELNS----IDELGWHHTGDVGMWLPTLFF  147 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g-~~Gel~i~~--~-~~~~gy~~~~~~~~----~~~~g~~~TGD~~~~d~~g~l  147 (199)
                      +++++.|.+++++.|+| ++|+.++++ +.|+|+++.  | +++++||+|+++..    ....|+|.|||.+++|++||+
T Consensus       413 pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~  491 (626)
T KOG1175|consen  413 PGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYY  491 (626)
T ss_pred             ccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceE
Confidence            89999999999999999 699999886 789999984  3 78999999999655    335899999999999999999


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+.         ||.||+||++|.++++.|||+++.+||.|+++..
T Consensus       492 ~i~---------GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAv  528 (626)
T KOG1175|consen  492 WIL---------GRVDDVINVSGHRIGTAEIESALVEHPAVAESAV  528 (626)
T ss_pred             EEE---------ecccccccccceeecHHHHHHHHhhCcchhheee
Confidence            999         9999999999999999999999999999998764

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=8.6e-31  Score=222.94  Aligned_cols=179  Identities=18%  Similarity=0.206  Sum_probs=153.1

Q ss_pred             ccccchhHHHHHHHhhhh---hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ---EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~---~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~   78 (199)
                      .++++|+++..|......   ....+++|.++++|++++++++++|.+.++..+++.||+||++..+...... ....++
T Consensus       267 ~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  346 (516)
T PRK13383        267 AFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPET  346 (516)
T ss_pred             EEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCc
Confidence            467899999988754321   2234789999999999999999999999999999999999998755443322 234578


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +|+|+++++++++| +++++++.|+.|||+++|+.++.+|++++..  ...+|||+|||++++|++|++++.        
T Consensus       347 ~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~--~~~~g~~~TGDl~~~d~~G~l~i~--------  415 (516)
T PRK13383        347 VGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK--AVVDGMTSTGDMGYLDNAGRLFIV--------  415 (516)
T ss_pred             ccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchh--heecCceecceeEEEcCCccEEEe--------
Confidence            99999999999999 7789999999999999999999999987643  235799999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                       ||.+|+|+.+|.+|+|.|||.+|.+||.|.+...
T Consensus       416 -GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~v  449 (516)
T PRK13383        416 -GREDDMIISGGENVYPRAVENALAAHPAVADNAV  449 (516)
T ss_pred             -ccccceEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence             9999999999999999999999999999976543

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.97  E-value=7.8e-31  Score=229.04  Aligned_cols=179  Identities=12%  Similarity=0.038  Sum_probs=144.8

Q ss_pred             cccchhHHHHHHHhh---hhhccCCceeEEEEecCCCCHHHHHHHHHHhC--CcEEeecccccCCCceeec-ccCCccCC
Q psy14311          4 IYRRNSIWDKLVFKK---VQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG--CLVIEGYGQTECVAPITLT-IQGDYVPE   77 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~---~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~--~~i~~~yG~tE~~~~~~~~-~~~~~~~~   77 (199)
                      +..+|++++.+....   ....++++||.++++|+++++++++++++.++  ..+.+.||+||++...... .......+
T Consensus       360 ~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g  439 (652)
T TIGR01217       360 FGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIG  439 (652)
T ss_pred             EecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCC
Confidence            345566665554322   12345589999999999999999999999885  4577899999975433222 22223457


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecC--cccccccCCCcCCC-----C-CCCCeeecCceEEEcCCCeEEE
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN--NVFLGYFKDPELNS-----I-DELGWHHTGDVGMWLPTLFFFF  149 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~--~~~~gy~~~~~~~~-----~-~~~g~~~TGD~~~~d~~g~l~~  149 (199)
                      ++|.|.++++++++| ++|+++ +|+.|||++++|  +++.|||++|+.+.     + ..+|||+|||++++|+||+|++
T Consensus       440 ~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i  517 (652)
T TIGR01217       440 EIQAPGLGTAVQSWD-PEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVI  517 (652)
T ss_pred             ccCCCcCCCceEEEC-CCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEE
Confidence            899999999999999 778888 589999999986  68999999998654     1 2368999999999999999999


Q ss_pred             EeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      .         ||.||+||.+|++|+|.|||++|.+||+|.++..
T Consensus       518 ~---------GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaav  552 (652)
T TIGR01217       518 H---------GRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLC  552 (652)
T ss_pred             E---------ecccCeEecCCEEcCHHHHHHHHHhCCCcceEEE
Confidence            9         9999999999999999999999999999987643

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.97  E-value=9.4e-31  Score=227.15  Aligned_cols=173  Identities=28%  Similarity=0.365  Sum_probs=143.3

Q ss_pred             ccccchhHHHHHHHhhh-----hhccCCceeEEEEecCCCCHHHHHHHHHH----hC--CcEEeecccccCCCceeeccc
Q psy14311          3 GIYRRNSIWDKLVFKKV-----QEDMGGNLRLMLAGSAPLAGNVLTFLRCA----LG--CLVIEGYGQTECVAPITLTIQ   71 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~-----~~~~~~slr~i~~~G~~~~~~~~~~~~~~----~~--~~i~~~yG~tE~~~~~~~~~~   71 (199)
                      .++++|+++..|+....     ...++++||.+++||+++++++.+++++.    ++  +.+++.||+||++.+++....
T Consensus       307 ~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~  386 (614)
T PRK08180        307 VYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTG  386 (614)
T ss_pred             EEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEeccc
Confidence            46789999998875321     22345789999999999999999998875    33  679999999999876665544


Q ss_pred             CCccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEE----cCCC
Q psy14311         72 GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMW----LPTL  145 (199)
Q Consensus        72 ~~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~----d~~g  145 (199)
                      ....++++|+|+++++++++|+        +..|||+++|++++.|||++|+.+.  +..+|||+|||++++    |++|
T Consensus       387 ~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g  458 (614)
T PRK08180        387 PLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPER  458 (614)
T ss_pred             ccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCC
Confidence            4456789999999999999983        2369999999999999999999887  556899999999999    5689


Q ss_pred             eEEEEeeeeeeeEeeecCeEEE-ecceecc--cccccccccCCccccccc
Q psy14311        146 FFFFIPMLVIMLMYTRIGLRIR-SRSRHSL--GKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       146 ~l~~~~r~~~~~~~gR~~~~i~-~~g~~v~--~~eiE~~l~~~~~~~~~~  192 (199)
                      +++|+         ||.+|+|+ .+|++++  |.|+|.++.+||.|.++.
T Consensus       459 ~l~i~---------GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~  499 (614)
T PRK08180        459 GLMFD---------GRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVV  499 (614)
T ss_pred             ceEEe---------cchhhhEEcCCCcEecchhhhHHHHhhcCchhheEE
Confidence            99999         99988877 5787665  889999999999998654

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=2.2e-30  Score=219.89  Aligned_cols=180  Identities=21%  Similarity=0.206  Sum_probs=156.1

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~   78 (199)
                      .++.+|+++..|+....   ....++++|.++++|+++++++++++.+.+++.+++.||+||++.+++..... ...+++
T Consensus       246 ~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  325 (509)
T PRK12406        246 HMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGT  325 (509)
T ss_pred             EEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCC
Confidence            46789999998875432   22345789999999999999999999999999999999999999866544322 235678


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccc-cccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFL-GYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIM  156 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~-gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~  156 (199)
                      +|.|+++++++++| +++++++.|+.|||++++++++. +|+++|+.+. ...++||+|||++++|++|++++.      
T Consensus       326 ~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~------  398 (509)
T PRK12406        326 VGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLC------  398 (509)
T ss_pred             cCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEe------
Confidence            99999999999999 77899999999999999998765 8999998777 667899999999999999999999      


Q ss_pred             eEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                         ||.+|+|+.+|.+|+|.|||.+|.+||.|.+..
T Consensus       399 ---GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~  431 (509)
T PRK12406        399 ---DRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCA  431 (509)
T ss_pred             ---ecccceEEECCEEECHHHHHHHHHhCCCeeEEE
Confidence               999999999999999999999999999988653

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=1e-30  Score=227.35  Aligned_cols=173  Identities=25%  Similarity=0.277  Sum_probs=142.2

Q ss_pred             ccccchhHHHHHHHhh-----hhhccCCceeEEEEecCCCCHHHHHHHHHHh----C--CcEEeecccccCCCceeeccc
Q psy14311          3 GIYRRNSIWDKLVFKK-----VQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL----G--CLVIEGYGQTECVAPITLTIQ   71 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~-----~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~----~--~~i~~~yG~tE~~~~~~~~~~   71 (199)
                      .++++|+++..|+...     .....+++||.+++||+++++++.++|.+.+    +  +.+++.||+||++.++.....
T Consensus       319 ~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~  398 (624)
T PRK12582        319 VYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW  398 (624)
T ss_pred             EEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccC
Confidence            3568899998886432     1223457899999999999999999998863    3  679999999999876653333


Q ss_pred             CCccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEE-c---CCC
Q psy14311         72 GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMW-L---PTL  145 (199)
Q Consensus        72 ~~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~-d---~~g  145 (199)
                      .....+++|+|++++++++++        .|+.|||+++|++++.|||++|+.+.  +..+|||+|||++++ |   ++|
T Consensus       399 ~~~~~~svG~p~pg~~v~i~~--------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g  470 (624)
T PRK12582        399 DTERVGLIGLPLPGVELKLAP--------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEK  470 (624)
T ss_pred             CCCCCCCCCcCCCCcEEEEcc--------CCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCC
Confidence            334678999999999999864        46689999999999999999999887  557899999999998 4   469


Q ss_pred             eEEEEeeeeeeeEeeecCeEEE-ecceecccccc--cccccCCccccccc
Q psy14311        146 FFFFIPMLVIMLMYTRIGLRIR-SRSRHSLGKRV--EGTVHGETKRSQSR  192 (199)
Q Consensus       146 ~l~~~~r~~~~~~~gR~~~~i~-~~g~~v~~~ei--E~~l~~~~~~~~~~  192 (199)
                      +++|+         ||.+|+|+ .+|++|+|.+|  |.++.+||.|.++.
T Consensus       471 ~l~i~---------GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~  511 (624)
T PRK12582        471 GLIFD---------GRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAV  511 (624)
T ss_pred             ceEEe---------ccchhhEecCCCcEechHHHHHHHHHhcCcchheEE
Confidence            99999         99999988 57999999888  47888999998653

>PRK12467 peptide synthase; Provisional

Probab=99.97  E-value=6.9e-31  Score=260.91  Aligned_cols=181  Identities=17%  Similarity=0.206  Sum_probs=155.6

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCC-----cc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGD-----YV   75 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-----~~   75 (199)
                      +.++++|++++.|+... .....++||.+++||+++++++.+.|.+.+ ++.++|.||+||++..++......     ..
T Consensus      3329 t~~~~~Ps~l~~l~~~~-~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 3407 (3956)
T PRK12467       3329 SIACFPPAYLQQFAEDA-GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAP 3407 (3956)
T ss_pred             EEEEcCHHHHHHHHhcc-cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCC
Confidence            34678999999887543 233457899999999999999999999877 578999999999988665432211     12


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCC-------CCeeecCceEEEcCCCe
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDE-------LGWHHTGDVGMWLPTLF  146 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~-------~g~~~TGD~~~~d~~g~  146 (199)
                      ..++|+|+++++++|+| ++++++|.|+.|||+|+|+++++||+|+|+.|.  +..       .+||+|||+|++++||+
T Consensus      3408 ~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~ 3486 (3956)
T PRK12467       3408 YAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGV 3486 (3956)
T ss_pred             CCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCc
Confidence            36899999999999999 889999999999999999999999999999887  332       34799999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ++|+         ||.|++||++|++|.|.|||++|.+||+|.++..
T Consensus      3487 l~~~---------GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v 3524 (3956)
T PRK12467       3487 IEYL---------GRIDHQVKIRGFRIELGEIEARLLQHPSVREAVV 3524 (3956)
T ss_pred             EEEe---------ccccceEeeceEeecHHHHHHHHhhCcccceEEE
Confidence            9999         9999999999999999999999999999987643

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1e-30  Score=222.69  Aligned_cols=181  Identities=24%  Similarity=0.271  Sum_probs=156.2

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC------Ccc
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG------DYV   75 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~------~~~   75 (199)
                      .++.+|+++..++..... ...++++|.+++||++++++....+.+.++..+++.||+||++..+......      ...
T Consensus       258 ~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  337 (524)
T PRK06188        258 ATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKR  337 (524)
T ss_pred             EEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhcccccccc
Confidence            356789999988865432 2345789999999999999999998888898899999999997655543221      224


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeee
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLV  154 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~  154 (199)
                      ..++|+|+++++++++| +++++++.|+.|||+++++.++.||+++++.+. ...+|||+|||+++++++|++++.    
T Consensus       338 ~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~----  412 (524)
T PRK06188        338 LTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIV----  412 (524)
T ss_pred             CCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEE----
Confidence            57899999999999999 669999999999999999999999999998877 556899999999999999999999    


Q ss_pred             eeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        155 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       155 ~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                           ||.+++|+.+|++++|.+||++|..||.|.+...
T Consensus       413 -----GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v  446 (524)
T PRK06188        413 -----DRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAV  446 (524)
T ss_pred             -----eccccceecCCEEECHHHHHHHHHhCCCeeEEEE
Confidence                 9999999999999999999999999999876543

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=1.2e-30  Score=219.88  Aligned_cols=180  Identities=21%  Similarity=0.289  Sum_probs=153.2

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc--CCccCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ--GDYVPEHV   79 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~--~~~~~~~~   79 (199)
                      +.+.++|+++..|+..........++|.++++|+++++++.+.+++. ++++++.||+||++..+.....  ....++++
T Consensus       231 t~l~~~P~~~~~l~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        231 TIISVVSTMLQRLLERLGEGTYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             cEEEeHHHHHHHHHhCcCccccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence            34678999999987543222334689999999999999999988874 9999999999998764433222  23456889


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      |+|++++++++.+ + +++++.|+.|||+++||+++.||+++++.+. ...++||+|||+++++++|++++.        
T Consensus       310 G~p~~~~~~~i~~-~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~--------  379 (483)
T PRK03640        310 GKPLFPCELKIEK-D-GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVL--------  379 (483)
T ss_pred             ccccCCcEEEEec-C-CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEe--------
Confidence            9999999999998 4 3789999999999999999999999998776 446899999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                       ||.+|+++.+|.+|+|.|||+++.++|.|.+...
T Consensus       380 -GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v  413 (483)
T PRK03640        380 -DRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGV  413 (483)
T ss_pred             -ecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEE
Confidence             9999999999999999999999999999886543

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.4e-30  Score=222.88  Aligned_cols=180  Identities=21%  Similarity=0.326  Sum_probs=156.0

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCC--ccCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGD--YVPEHV   79 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~--~~~~~~   79 (199)
                      .++.+|+++..|+..........++|.+++||+++++++++++.+.+ +..+++.||+||++.+........  ....++
T Consensus       268 ~~~~~P~~l~~l~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~  347 (542)
T PRK07786        268 GIFLVPAQWQAVCAEQQARPRDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV  347 (542)
T ss_pred             EEEehHHHHHHHHhCcccCccCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCc
Confidence            46788999999886543323334799999999999999999999988 788999999999987655433221  245789


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      |+|++++.++++| +++++++.|+.|||+++|+.++.||+++++.+. .+.++||+|||+++++++|++++.        
T Consensus       348 G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~--------  418 (542)
T PRK07786        348 GKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVV--------  418 (542)
T ss_pred             cccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEE--------
Confidence            9999999999999 778999999999999999999999999998877 446799999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                       ||.+|+|+.+|.+|+|.|||++|..||.|.+..
T Consensus       419 -GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~  451 (542)
T PRK07786        419 -DRKKDMIISGGENIYCAEVENVLASHPDIVEVA  451 (542)
T ss_pred             -ecccceEEeCCEEECHHHHHHHHHhCCCccEEE
Confidence             999999999999999999999999999987654

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=1.7e-30  Score=222.68  Aligned_cols=181  Identities=23%  Similarity=0.265  Sum_probs=155.5

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecccC---CccCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQG---DYVPE   77 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~---~~~~~   77 (199)
                      .++++|+++..++..... ...++++|.++++|+++++++.+++.+.++ ..+++.||+||++.++......   .....
T Consensus       294 ~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~  373 (558)
T PRK12583        294 ALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVE  373 (558)
T ss_pred             EEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccC
Confidence            457899998887754322 234578999999999999999999998886 4699999999999876654322   22457


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      ++|+|+++++++++|++ +++++.|+.|||+++|+.++.||+++++.+.  +..++||+|||++++|++|++++.     
T Consensus       374 ~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~-----  447 (558)
T PRK12583        374 TVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIV-----  447 (558)
T ss_pred             CCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEE-----
Confidence            89999999999999955 8999999999999999999999999998776  447899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                          ||.+|+|+.+|.+|+|.+||++|..||.|.+...
T Consensus       448 ----GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v  481 (558)
T PRK12583        448 ----GRSKDMIIRGGENIYPREIEEFLFTHPAVADVQV  481 (558)
T ss_pred             ----ecccceeEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence                9999999999999999999999999999876543

>PRK12316 peptide synthase; Provisional

Probab=99.97  E-value=1.4e-30  Score=262.05  Aligned_cols=181  Identities=17%  Similarity=0.202  Sum_probs=155.3

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCCc-----cC
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDY-----VP   76 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~-----~~   76 (199)
                      .++++|++++.|..........++||.+++||+++++++.+.|.+.+ +..+++.||+||++..++.......     ..
T Consensus      2239 ~~~~~P~~~~~l~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~ 2318 (5163)
T PRK12316       2239 ILDFPPVYLQQLAEHAERDGRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAY 2318 (5163)
T ss_pred             EEEcChHHHHHHHhhhhcccCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCc
Confidence            46789999999886544444446899999999999999999999876 5789999999999876554322111     12


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC-------CCCeeecCceEEEcCCCeE
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID-------ELGWHHTGDVGMWLPTLFF  147 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~-------~~g~~~TGD~~~~d~~g~l  147 (199)
                      .++|+|+++++++|+| ++++++|.|+.|||+|+|+++++||+++|+.|.  +.       .++||+|||++++++||++
T Consensus      2319 ~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l 2397 (5163)
T PRK12316       2319 VPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVV 2397 (5163)
T ss_pred             CCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcE
Confidence            5799999999999999 778999999999999999999999999999887  21       3469999999999999999


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +|+         ||+|++||++|++|.|.|||.+|.+||+|.++..
T Consensus      2398 ~~~---------GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v 2434 (5163)
T PRK12316       2398 EYL---------GRIDHQVKIRGFRIELGEIEARLQAHPAVREAVV 2434 (5163)
T ss_pred             EEe---------cCCCCeEEEcCccCChHHHHHHHhhCcccceEEE
Confidence            999         9999999999999999999999999999987643

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=3.7e-30  Score=220.98  Aligned_cols=180  Identities=26%  Similarity=0.377  Sum_probs=156.5

Q ss_pred             ccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~G   80 (199)
                      .++.+|++++.|..... .....+++|.+++||+++++.+.++|++.+++++++.||+||++..++..... ...++++|
T Consensus       302 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  381 (560)
T PRK08974        302 AITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIG  381 (560)
T ss_pred             eEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccc
Confidence            45678999988875432 22334789999999999999999999998899999999999998866654332 23467899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      .|+++++++++| +++++++.|+.|||+++|+.++.||+++++.+. ...++||+|||++++|++|++++.         
T Consensus       382 ~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~---------  451 (560)
T PRK08974        382 LPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIV---------  451 (560)
T ss_pred             cCcCCCEEEEEC-CCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcCCceEEEE---------
Confidence            999999999999 678999999999999999999999999998876 446899999999999999999999         


Q ss_pred             eecCeEEEecceecccccccccccCCccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      ||.+|+|+.+|.+++|.+||++|.+||.|.+..
T Consensus       452 GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~  484 (560)
T PRK08974        452 DRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVA  484 (560)
T ss_pred             ecccceEEeCCEEECHHHHHHHHHhCCCeeEEE
Confidence            999999999999999999999999999998654

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.97  E-value=4e-30  Score=219.82  Aligned_cols=181  Identities=20%  Similarity=0.276  Sum_probs=151.9

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEec-CCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC---ccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGS-APLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G-~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~---~~~~~   78 (199)
                      .++++|+++..|+........+++++.+..+| .+...++.+++.+. ++++++.||+||++.+++......   ....+
T Consensus       272 ~~~~~p~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  350 (540)
T PRK06164        272 HTFGNDEMLRRILDTAGERADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEG  350 (540)
T ss_pred             eecCCHHHHHHHHHhhcccCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcceecc
Confidence            46789999999887644445567888876665 55667777777765 899999999999988665543321   12345


Q ss_pred             CCccc-cCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         79 VGPPI-CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        79 ~G~p~-~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      .|.|+ ++++++++|++++++++.|+.|||+++|++++.||+++|+.+.  +..++||+|||+|++|++|++++.     
T Consensus       351 ~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~-----  425 (540)
T PRK06164        351 GGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQ-----  425 (540)
T ss_pred             CccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEE-----
Confidence            67775 7899999998899999999999999999999999999999887  567899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                          ||.+|+|+.+|++|+|.|||++|.+||.|.+...
T Consensus       426 ----GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v  459 (540)
T PRK06164        426 ----TRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQV  459 (540)
T ss_pred             ----eecCCeEEECCEEcCHHHHHHHHHhCCCceeEEE
Confidence                9999999999999999999999999999986543

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.97  E-value=3.2e-30  Score=220.81  Aligned_cols=178  Identities=24%  Similarity=0.308  Sum_probs=151.7

Q ss_pred             ccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      .++++|+++..|....... ....++|.++.+|  +++++.+.+.+.+++++++.||+||++.++.... ....++++|.
T Consensus       271 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~  347 (542)
T PRK06155        271 VTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGR  347 (542)
T ss_pred             EEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCc
Confidence            4567888888887554332 2336788877555  5788999999999999999999999988665433 2345678999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecC---cccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGN---NVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      |.++++++++| +++++++.|+.|||+++++   +++.||+++++.+. ...++||+|||+++++++|++++.       
T Consensus       348 ~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~-------  419 (542)
T PRK06155        348 LAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFV-------  419 (542)
T ss_pred             cCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEE-------
Confidence            99999999999 6799999999999999998   69999999998776 446899999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                        ||.+|+|+.+|.+|+|.|||++|.+||.|.+...
T Consensus       420 --GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v  453 (542)
T PRK06155        420 --DRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAV  453 (542)
T ss_pred             --ecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEE
Confidence              9999999999999999999999999999997654

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.97  E-value=3.5e-30  Score=220.32  Aligned_cols=182  Identities=22%  Similarity=0.252  Sum_probs=155.0

Q ss_pred             ccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc-CCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ-GDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~G   80 (199)
                      .+.++|+++..|+.... ....++++|.+++||+++++++.+++.+.+++.+++.||+||++..++.... ....++++|
T Consensus       289 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G  368 (541)
T TIGR03205       289 VFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIG  368 (541)
T ss_pred             EeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCCCcc
Confidence            35678999988875432 2234468999999999999999999999889999999999999886654432 223457899


Q ss_pred             ccccCcEEEEEe-CCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVD-VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d-~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      .|++++.+++.+ .+++++++.|+.|||++++++++.||+++|+.+. ...++||+|||+++++++|+++++        
T Consensus       369 ~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~--------  440 (541)
T TIGR03205       369 LMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLV--------  440 (541)
T ss_pred             eeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEEE--------
Confidence            999999988764 2677899999999999999999999999998876 445789999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                       ||.+|+|+.+|.+++|.|||+++.+||.|.++..
T Consensus       441 -GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v  474 (541)
T TIGR03205       441 -DRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIV  474 (541)
T ss_pred             -ccccCeEEECCEEECHHHHHHHHHhCCCeeeEEE
Confidence             9999999999999999999999999999986543

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.97  E-value=3.9e-30  Score=215.96  Aligned_cols=164  Identities=17%  Similarity=0.218  Sum_probs=138.5

Q ss_pred             cccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC--ccCCCCCc
Q psy14311          4 IYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD--YVPEHVGP   81 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--~~~~~~G~   81 (199)
                      ++++|++++.++...  ...++++|.+++||+++++++.+.+.+ +++++++.||+||++..+.......  ....++|+
T Consensus       211 ~~~vP~~l~~l~~~~--~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~  287 (452)
T PRK07445        211 LSLVPTQLQRLLQLR--PQWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQ  287 (452)
T ss_pred             EEehHHHHHHHHhhC--hhhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCc
Confidence            568899999987532  233578999999999999999998876 4899999999999986544332221  24568999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTR  161 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR  161 (199)
                      |+|+++++++         .|+.|||++++|+++.||++++..    .++||+|||++++|+||++++.         ||
T Consensus       288 ~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~~----~~g~~~TGDl~~~d~dG~l~~~---------GR  345 (452)
T PRK07445        288 VLPHAQITIP---------ANQTGNITIQAQSLALGYYPQILD----SQGIFETDDLGYLDAQGYLHIL---------GR  345 (452)
T ss_pred             cCCCCeEEEc---------CCCcceEEEeCCccchhhcCCccC----CCCEEECCCEEEEcCCCCEEEE---------ee
Confidence            9999999987         356899999999999999987542    4789999999999999999999         99


Q ss_pred             cCeEEEecceecccccccccccCCccccccc
Q psy14311        162 IGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       162 ~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      .+|+|+.+|++|+|.|||++|.+||.|.++.
T Consensus       346 ~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~  376 (452)
T PRK07445        346 NSQKIITGGENVYPAEVEAAILATGLVQDVC  376 (452)
T ss_pred             cCCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence            9999999999999999999999999997654

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.97  E-value=3.4e-30  Score=218.96  Aligned_cols=179  Identities=23%  Similarity=0.335  Sum_probs=156.7

Q ss_pred             ccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC--CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG--DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~--~~~~~~   78 (199)
                      .++++|+++..|+.... ....++++|.+++||+++++++.+.+++.+ ++.+++.||+||++.+++.....  ....++
T Consensus       263 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (523)
T PRK08316        263 SFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGS  342 (523)
T ss_pred             EEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCC
Confidence            46688999988886543 233457899999999999999999999988 78999999999998866654332  234578


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      +|+|+++++++++| +++++++.|+.|||+++|+.++.+|+++++.+. .+.++||+|||+|++|++|++++.       
T Consensus       343 ~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~-------  414 (523)
T PRK08316        343 AGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVV-------  414 (523)
T ss_pred             cccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEe-------
Confidence            99999999999999 778999999999999999999999999998776 556899999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQS  191 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~  191 (199)
                        ||.+|+|+.+|.+|+|.+||++|..+|.|.+.
T Consensus       415 --gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~  446 (523)
T PRK08316        415 --DRKKDMIKTGGENVASREVEEALYTHPAVAEV  446 (523)
T ss_pred             --cccccEEEeCCeEECHHHHHHHHHhCCChheE
Confidence              99999999999999999999999999998765

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.97  E-value=6.2e-30  Score=216.58  Aligned_cols=180  Identities=18%  Similarity=0.195  Sum_probs=151.0

Q ss_pred             ccccchhHHHHHHHhh-hhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeeccc-----CCcc
Q psy14311          3 GIYRRNSIWDKLVFKK-VQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQ-----GDYV   75 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~-~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~-----~~~~   75 (199)
                      .+.++|+++..++... ......++++.++++|+++++++.+++.+.+ ++.+++.||+||++..++....     ....
T Consensus       235 ~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  314 (502)
T TIGR01734       235 VWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYP  314 (502)
T ss_pred             EEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCC
Confidence            3567899888776442 2334457899999999999999999999988 7899999999999764443221     1123


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C---CCCCeeecCceEEEcCCCeEEEE
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I---DELGWHHTGDVGMWLPTLFFFFI  150 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~---~~~g~~~TGD~~~~d~~g~l~~~  150 (199)
                      ..++|.|.++++++++| +++++++.|+.|||+++|+.++.||+++++.+.  +   ...+||+|||+|++|++ ++++.
T Consensus       315 ~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~  392 (502)
T TIGR01734       315 RLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQ  392 (502)
T ss_pred             ccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEe
Confidence            35799999999999999 678999999999999999999999999998876  1   23469999999999977 99999


Q ss_pred             eeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        151 PMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       151 ~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                               ||.+|+|+.+|++|+|.|||+++.+||.|.++..
T Consensus       393 ---------GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v  426 (502)
T TIGR01734       393 ---------GRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVV  426 (502)
T ss_pred             ---------ccccCeEEECcEEeCHHHHHHHHHcCCCccEEEE
Confidence                     9999999999999999999999999999876654

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.97  E-value=5.8e-30  Score=217.67  Aligned_cols=180  Identities=20%  Similarity=0.302  Sum_probs=152.5

Q ss_pred             ccccchhHHHHHHHhhhhhc-cCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc-CCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQED-MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ-GDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~-~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~G   80 (199)
                      .+.++|++++.++..+.... ...+++.++++ .+++++.+..|.+.+++++++.||+||++..+..... ......++|
T Consensus       265 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  343 (517)
T PRK08008        265 ITECIPMMIRTLMVQPPSANDRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIG  343 (517)
T ss_pred             EEechHHHHHHHHhCCCccccccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccc
Confidence            45689999988875543322 23568877765 4889999999999899999999999999875543322 223457899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEec---CcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRG---NNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~---~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      .|+++++++++| +++++++.|+.|||+++|   ++++.|||++|+.+.  +..+|||+|||++++|++|++++.     
T Consensus       344 ~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~-----  417 (517)
T PRK08008        344 RPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFV-----  417 (517)
T ss_pred             cCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEe-----
Confidence            999999999999 789999999999999997   689999999999887  567899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                          ||.+|+|+.+|.+|+|.|||.++.+||.|.++..
T Consensus       418 ----GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v  451 (517)
T PRK08008        418 ----DRRCNMIKRGGENVSCVELENIIATHPKIQDIVV  451 (517)
T ss_pred             ----ecccceEEeCCEEECHHHHHHHHHhCCceeeEEE
Confidence                9999999999999999999999999999887654

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=3.4e-30  Score=218.34  Aligned_cols=180  Identities=18%  Similarity=0.207  Sum_probs=155.5

Q ss_pred             ccccchhHHHHHHHhhhh---hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ---EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~---~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~   78 (199)
                      .++++|+++..++..+..   ..++.++|.++++|+++++++++++.+.++..+++.||+||++.+++..... ....++
T Consensus       237 ~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  316 (502)
T PRK08276        237 HSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGS  316 (502)
T ss_pred             EEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCC
Confidence            456789999998865422   2345789999999999999999999998898899999999999866544322 235578


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIM  156 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~  156 (199)
                      +|+|+ +++++++| +++++++.|+.|||+++++.++.||+++++.+.  +..++||+|||++++|++|++++.      
T Consensus       317 ~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~------  388 (502)
T PRK08276        317 VGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLT------  388 (502)
T ss_pred             cceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEe------
Confidence            99999 88999999 678999999999999999999999999998877  455699999999999999999999      


Q ss_pred             eEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                         ||.+++|+.+|.+|++.|||.+|.+||.|.++..
T Consensus       389 ---GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v  422 (502)
T PRK08276        389 ---DRKSDMIISGGVNIYPQEIENLLVTHPKVADVAV  422 (502)
T ss_pred             ---ccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEE
Confidence               9999999999999999999999999999886543

>PRK12467 peptide synthase; Provisional

Probab=99.97  E-value=3.4e-30  Score=256.03  Aligned_cols=182  Identities=18%  Similarity=0.192  Sum_probs=156.1

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC-----Ccc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG-----DYV   75 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-----~~~   75 (199)
                      +.++++|++++.|..........++||.+++||+++++++.+.|.+.+ +..++|.||+||++..++.....     ...
T Consensus      1811 t~~~~~Ps~~~~l~~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~ 1890 (3956)
T PRK12467       1811 TTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRD 1890 (3956)
T ss_pred             eEEECCHHHHHHHHhhccccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCC
Confidence            346789999999886433334457899999999999999999998877 47799999999998766543221     123


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC-------CCCeeecCceEEEcCCCe
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID-------ELGWHHTGDVGMWLPTLF  146 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~-------~~g~~~TGD~~~~d~~g~  146 (199)
                      ..++|+|++++++.|+| ++++++|.|+.|||+++|+++++||+|+|+.+.  +.       ..+||+|||++++++||+
T Consensus      1891 ~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~ 1969 (3956)
T PRK12467       1891 SVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGV 1969 (3956)
T ss_pred             CCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCC
Confidence            46899999999999999 889999999999999999999999999999886  21       235999999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ++|+         ||.|++||++|++|.|.|||.+|.+||.|.++..
T Consensus      1970 l~~~---------GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~v 2007 (3956)
T PRK12467       1970 IEYL---------GRIDHQVKIRGFRIELGEIEARLREQGGVREAVV 2007 (3956)
T ss_pred             EEEe---------cccCceEEeCeEEechHHHHHHHHhCCCcceEEE
Confidence            9999         9999999999999999999999999999987544

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=8.4e-30  Score=216.57  Aligned_cols=179  Identities=15%  Similarity=0.191  Sum_probs=152.5

Q ss_pred             ccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCC
Q psy14311          3 GIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEH   78 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~   78 (199)
                      .++++|+++..++....   ....++++|.++++|+++++++++++++.++..+++.||+||++.++...... ...+++
T Consensus       250 ~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  329 (511)
T PRK13391        250 HTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGT  329 (511)
T ss_pred             EEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCC
Confidence            35678999888874321   12235789999999999999999999998899999999999999865543322 235678


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCC-CCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDE-LGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~-~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      +|+|+++ .++++| +++++++.|+.|||+++++ ++.+|+++++.+.  +.. ++||+|||++++|++|++++.     
T Consensus       330 vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~-----  401 (511)
T PRK13391        330 VGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLT-----  401 (511)
T ss_pred             cCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEe-----
Confidence            9999999 688999 7899999999999999999 8899999998776  333 499999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                          ||.+|+|+.+|.+++|.|||++|.+||.|.+...
T Consensus       402 ----gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v  435 (511)
T PRK13391        402 ----DRAAFMIISGGVNIYPQEAENLLITHPKVADAAV  435 (511)
T ss_pred             ----ccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEE
Confidence                9999999999999999999999999999886543

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.97  E-value=7e-30  Score=216.77  Aligned_cols=181  Identities=22%  Similarity=0.273  Sum_probs=154.4

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeeccc-CCccCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQ-GDYVPEHV   79 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~   79 (199)
                      +.++++|+++..|...........++|.++++|+++++++.+.+++.+ ++.+++.||+||++........ ....++++
T Consensus       251 t~~~~~P~~~~~l~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~v  330 (515)
T TIGR03098       251 TGLAAVPPLWAQLAQLDWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSI  330 (515)
T ss_pred             ceEecChHHHHHHHhcccCCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCc
Confidence            356789999999876543334557899999999999999999999988 6889999999999765443322 12356789


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC-----------CCCeeecCceEEEcCCCe
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID-----------ELGWHHTGDVGMWLPTLF  146 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~-----------~~g~~~TGD~~~~d~~g~  146 (199)
                      |+|+++++++++| +++++++.|+.|||+++|+.++.||+++++.+.  +.           .++||.|||++++|++|+
T Consensus       331 G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       331 GKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             ceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence            9999999999999 778999999999999999999999999987664  11           235899999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      +++.         ||.+|+|+.+|.+|+|.|||++|.+||.|.++.
T Consensus       410 l~~~---------GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~  446 (515)
T TIGR03098       410 LYFV---------GRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAV  446 (515)
T ss_pred             EEEE---------eccccceecCCEEeCHHHHHHHHhcCCCeeEEE
Confidence            9999         999999999999999999999999999987653

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12316 peptide synthase; Provisional

Probab=99.97  E-value=3.7e-30  Score=259.11  Aligned_cols=181  Identities=18%  Similarity=0.220  Sum_probs=156.5

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCC-----cc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGD-----YV   75 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-----~~   75 (199)
                      +.++++|++++.|..........++||.+++||+++++++.+.+.+.+ ++++++.||+||++..++......     ..
T Consensus      4786 t~~~~~Ps~~~~l~~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 4865 (5163)
T PRK12316       4786 TVLVFPPVYLQQLAEHAERDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAA 4865 (5163)
T ss_pred             EEEEcCHHHHHHHHhhhccccCCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCC
Confidence            356799999999986654444568899999999999999998877665 688999999999998665443221     24


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC-------CCCeeecCceEEEcCCCe
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID-------ELGWHHTGDVGMWLPTLF  146 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~-------~~g~~~TGD~~~~d~~g~  146 (199)
                      ..++|+|+++++++|+| +.++++|.|+.|||+|+|+++++||+++|+.+.  +.       ..+||+|||+++++++|+
T Consensus      4866 ~~~iG~p~~~~~~~i~d-~~~~~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~ 4944 (5163)
T PRK12316       4866 YMPIGTPLGNRSGYVLD-GQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGV 4944 (5163)
T ss_pred             CCcccccccCCEEEEEC-CCCCcCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCc
Confidence            56899999999999999 889999999999999999999999999999886  21       236999999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      +++.         ||+|++||++|++|.|.|||.+|.+||.|.++.
T Consensus      4945 l~~~---------GR~d~~iki~G~ri~~~eIE~~l~~~p~V~~a~ 4981 (5163)
T PRK12316       4945 IDYL---------GRVDHQVKIRGFRIELGEIEARLREHPAVREAV 4981 (5163)
T ss_pred             EEEe---------ccccceEeeccEeecHHHHHHHHHhCCCcceEE
Confidence            9999         999999999999999999999999999997643

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.96  E-value=6.2e-30  Score=219.00  Aligned_cols=178  Identities=22%  Similarity=0.285  Sum_probs=150.1

Q ss_pred             cccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC--ccCCCCC
Q psy14311          4 IYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD--YVPEHVG   80 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--~~~~~~G   80 (199)
                      ++.+|+.+..++.... ....++++|.+++||+++++++.+.+.+. ++++++.||+||++.+........  ....++|
T Consensus       280 ~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  358 (547)
T PRK06087        280 MLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDG  358 (547)
T ss_pred             EeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCC
Confidence            3455666666554322 22344789999999999999999988775 999999999999988665443221  2346789


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +|+++++++++| +++++++.|+.|||+++|+.++.||+++++.+.  +..++||+|||++++|++|++++.        
T Consensus       359 ~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~--------  429 (547)
T PRK06087        359 YAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT--------  429 (547)
T ss_pred             ccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE--------
Confidence            999999999999 788999999999999999999999999998776  556899999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                       ||.+|+|+.+|.+|+|.+||++|..+|.|.+..
T Consensus       430 -GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~  462 (547)
T PRK06087        430 -GRKKDIIVRGGENISSREVEDILLQHPKIHDAC  462 (547)
T ss_pred             -ecchhhhhcCCEEECHHHHHHHHHhCCCeeEEE
Confidence             999999999999999999999999999987653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.96  E-value=1.5e-29  Score=232.57  Aligned_cols=175  Identities=19%  Similarity=0.181  Sum_probs=148.5

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCcc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP   82 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p   82 (199)
                      .++.+|++++.+.... ...+.+++|.+++||+++++++.+.+.+.+++++++.||+||++..+..........+++|+|
T Consensus       886 ~~~~~p~~l~~l~~~~-~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p  964 (1140)
T PRK06814        886 ILFGTDTFLNGYARYA-HPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRL  964 (1140)
T ss_pred             EEEecHHHHHHHHhhc-ccccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCcc
Confidence            3567899888877542 233457899999999999999999999999999999999999988766554444466899999


Q ss_pred             ccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEee
Q psy14311         83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYT  160 (199)
Q Consensus        83 ~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~g  160 (199)
                      +|++++++.+ ..+    .++.|||+++|++++.||+++++...  ...+|||+|||++++|+||++++.         |
T Consensus       965 ~~g~~~~~~~-~~~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~---------G 1030 (1140)
T PRK06814        965 LPGIEYRLEP-VPG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIK---------G 1030 (1140)
T ss_pred             CCCCeEEEee-cCC----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEE---------e
Confidence            9999999987 332    35679999999999999999875443  335899999999999999999999         9


Q ss_pred             ecCeEEEecceecccccccccccCCccccccc
Q psy14311        161 RIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       161 R~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      |.||+||.+|++|+|.|||+++.+||.+.+..
T Consensus      1031 R~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~ 1062 (1140)
T PRK06814       1031 RAKRFAKIAGEMISLAAVEELAAELWPDALHA 1062 (1140)
T ss_pred             cccCeeeeCCEEECHHHHHHHHHhcCCcccEE
Confidence            99999999999999999999999999887653

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=1e-29  Score=217.57  Aligned_cols=178  Identities=20%  Similarity=0.184  Sum_probs=149.3

Q ss_pred             cccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC---------
Q psy14311          4 IYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---------   73 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~---------   73 (199)
                      +.++|+++..|+..... ....+++|.++++|+++++++++.+.+.+++.+++.||+||++..++......         
T Consensus       271 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  350 (539)
T PRK07008        271 SAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDE  350 (539)
T ss_pred             EEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchh
Confidence            46789999988765322 23457899999999999999999999999999999999999987554332110         


Q ss_pred             --ccCCCCCccccCcEEEEEeCCCCcccCCC--CcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEE
Q psy14311         74 --YVPEHVGPPICCCSVKLVDVPEMDYFAHE--GKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFF  149 (199)
Q Consensus        74 --~~~~~~G~p~~~~~~~v~d~~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~  149 (199)
                        ....++|+|+|+++++++| +++++++.+  +.|||+++|+.++.||++++...  ..+|||+|||++++|++|++++
T Consensus       351 ~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~--~~~g~~~TGD~~~~~~dg~l~~  427 (539)
T PRK07008        351 QRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASP--LVDGWFPTGDVATIDADGFMQI  427 (539)
T ss_pred             hhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChhhh--hcCCCcccCceEEEcCCCcEEE
Confidence              1136799999999999999 678888754  57999999999999999998422  2368999999999999999999


Q ss_pred             EeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      .         ||.+|+|+.+|.+|+|.|||+++..||.|.++..
T Consensus       428 ~---------GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v  462 (539)
T PRK07008        428 T---------DRSKDVIKSGGEWISSIDIENVAVAHPAVAEAAC  462 (539)
T ss_pred             e---------ecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEE
Confidence            9         9999999999999999999999999999987654

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=8e-30  Score=216.30  Aligned_cols=181  Identities=25%  Similarity=0.380  Sum_probs=157.8

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCc------c
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY------V   75 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~------~   75 (199)
                      .++++|+++..|...... ...++++|.++++|+++++++++++.+.+++++++.||+||++.++........      .
T Consensus       258 ~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~  337 (521)
T PRK06187        258 FFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTK  337 (521)
T ss_pred             EEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCccccccccccc
Confidence            467899999999866544 344588999999999999999999999999999999999999876655433222      5


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCC--CCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEee
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAH--EGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPM  152 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r  152 (199)
                      ..++|.|+++++++++| +++.+++.  |+.|||+++++.++.+|+++++.+. ...++||+|||+++++++|++++.  
T Consensus       338 ~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~--  414 (521)
T PRK06187        338 RRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYIT--  414 (521)
T ss_pred             CCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEe--
Confidence            67899999999999999 66888988  9999999999999999999988776 455779999999999999999999  


Q ss_pred             eeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        153 LVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       153 ~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                             ||.+|+|+.+|.+++|.+||++|.++|.|.+...
T Consensus       415 -------GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v  448 (521)
T PRK06187        415 -------DRIKDVIISGGENIYPRELEDALYGHPAVAEVAV  448 (521)
T ss_pred             -------ecccceEEcCCeEECHHHHHHHHHhCCCceEEEE
Confidence                   9999999999999999999999999999876543

>PRK05691 peptide synthase; Validated

Probab=99.96  E-value=1.5e-29  Score=252.99  Aligned_cols=180  Identities=17%  Similarity=0.269  Sum_probs=155.7

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecc--cCCccCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTI--QGDYVPEHV   79 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~--~~~~~~~~~   79 (199)
                      .++++|++++.|..... ....++||.+++||+++++++.++|.+.+ ++.++|.||+||++..++...  .......++
T Consensus      1367 ~~~~~Ps~l~~l~~~~~-~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~i 1445 (4334)
T PRK05691       1367 TLHFVPPLLQLFIDEPL-AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPI 1445 (4334)
T ss_pred             EEECcHHHHHHHHhCcc-cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcc
Confidence            46789999999875432 23457899999999999999999999887 688999999999987655432  223345789


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC-------CCCeeecCceEEEcCCCeEEEE
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID-------ELGWHHTGDVGMWLPTLFFFFI  150 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~-------~~g~~~TGD~~~~d~~g~l~~~  150 (199)
                      |+|+++++++|+| +++++++.|+.|||+|+|+++++||+++|+.+.  +.       ..+||+|||++++++||+++|+
T Consensus      1446 G~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~ 1524 (4334)
T PRK05691       1446 GRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYL 1524 (4334)
T ss_pred             cceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEe
Confidence            9999999999999 789999999999999999999999999999886  21       2359999999999999999999


Q ss_pred             eeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        151 PMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       151 ~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                               ||.|++||.+|++|.|.|||.+|.+||.|.++..
T Consensus      1525 ---------GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v 1558 (4334)
T PRK05691       1525 ---------GRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAV 1558 (4334)
T ss_pred             ---------cccCcEEEECCEEcCHHHHHHHHHhCCCcceEEE
Confidence                     9999999999999999999999999999987644

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=7.6e-30  Score=202.43  Aligned_cols=180  Identities=20%  Similarity=0.253  Sum_probs=157.2

Q ss_pred             ccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCc-cCCCCCcc
Q psy14311          5 YRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY-VPEHVGPP   82 (199)
Q Consensus         5 ~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~-~~~~~G~p   82 (199)
                      -.+|++...|++... ...+++|||.+=.||+.++++..++....+|+.+-+.|||.|.....+--.+... -..+.|+|
T Consensus       284 ALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrP  363 (542)
T COG1021         284 ALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRP  363 (542)
T ss_pred             EeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCCc
Confidence            468998888887644 4456699999999999999999999999999999999999997654332222222 33678999


Q ss_pred             c-cCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         83 I-CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        83 ~-~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      + |.=+++|+| ++|+++++|++|+|..+||...+|||+-|+-+.  ++.+|+|+|||+.++|++||+.+.         
T Consensus       364 lsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~---------  433 (542)
T COG1021         364 LSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVE---------  433 (542)
T ss_pred             CCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEE---------
Confidence            7 578999999 899999999999999999999999999998776  889999999999999999999999         


Q ss_pred             eecCeEEEecceecccccccccccCCccccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKS  194 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~~  194 (199)
                      ||.+|+||.+|++|..+|||+.|..||.|.++...
T Consensus       434 GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlV  468 (542)
T COG1021         434 GRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALV  468 (542)
T ss_pred             eeehhhhccccchhhHHHHHHHHhhCchhhhhhhh
Confidence            99999999999999999999999999999876543

>PLN02479 acetate-CoA ligase

Probab=99.96  E-value=4.7e-29  Score=214.67  Aligned_cols=181  Identities=22%  Similarity=0.267  Sum_probs=149.1

Q ss_pred             ccccchhHHHHHHHhhhhhc--cCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc-C-------
Q psy14311          3 GIYRRNSIWDKLVFKKVQED--MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ-G-------   72 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~--~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~-------   72 (199)
                      .++.+|++++.|........  ..++++.++++|+++++++++.|.+. +.++++.||+||+++.++.... .       
T Consensus       286 ~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  364 (567)
T PLN02479        286 HFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPP  364 (567)
T ss_pred             EEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCc
Confidence            46789999999886543222  34789999999999999999999876 8899999999998654332210 0       


Q ss_pred             --C-ccCCCCCccccCcE-EEEEeCCCCcccCCC--CcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCC
Q psy14311         73 --D-YVPEHVGPPICCCS-VKLVDVPEMDYFAHE--GKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTL  145 (199)
Q Consensus        73 --~-~~~~~~G~p~~~~~-~~v~d~~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g  145 (199)
                        . ....+.|.+.+++. ++++|++++++++.+  +.|||+++|++++.|||++|+.+. ...++||+|||++++|++|
T Consensus       365 ~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g  444 (567)
T PLN02479        365 EEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDG  444 (567)
T ss_pred             ccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCCc
Confidence              0 01235788888875 788987788888764  579999999999999999999887 5568999999999999999


Q ss_pred             eEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       146 ~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ++++.         ||.+|+|+.+|.+|+|.|||.+|..||.|.++..
T Consensus       445 ~l~~~---------GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v  483 (567)
T PLN02479        445 YIEIK---------DRSKDIIISGGENISSLEVENVVYTHPAVLEASV  483 (567)
T ss_pred             cEEEe---------ccccceEEeCCEEEcHHHHHHHHHhCcccceeeE
Confidence            99999         9999999999999999999999999999887643

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=8.7e-29  Score=213.29  Aligned_cols=180  Identities=19%  Similarity=0.236  Sum_probs=149.6

Q ss_pred             ccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC--------
Q psy14311          3 GIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD--------   73 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--------   73 (199)
                      .++.+|+++..++...... ....++|.++++|+++++++++.|.+.+++++++.||+||++..+.......        
T Consensus       275 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  354 (576)
T PRK05620        275 VAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARW  354 (576)
T ss_pred             eeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccccccc
Confidence            4567899988887543222 2335799999999999999999999999999999999999988655433211        


Q ss_pred             ccCCCCCccccCcEEEEEeCCCCcccC--CCCcceEEEecCcccccccCCCcCC----------------C--CCCCCee
Q psy14311         74 YVPEHVGPPICCCSVKLVDVPEMDYFA--HEGKGEVCVRGNNVFLGYFKDPELN----------------S--IDELGWH  133 (199)
Q Consensus        74 ~~~~~~G~p~~~~~~~v~d~~~~~~~~--~g~~Gel~i~~~~~~~gy~~~~~~~----------------~--~~~~g~~  133 (199)
                      ....++|++.++++++++| + +..++  .+..|||+++|++++.|||++++.+                .  +..++||
T Consensus       355 ~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~  432 (576)
T PRK05620        355 AYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWL  432 (576)
T ss_pred             ccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcE
Confidence            1124689999999999999 5 66664  4678999999999999999999876                1  2346899


Q ss_pred             ecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        134 HTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       134 ~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +|||++++|++|++++.         ||.+|+|+.+|.+|+|.|||.+|.+||.|.++..
T Consensus       433 ~TGD~~~~~~dg~l~~~---------GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~v  483 (576)
T PRK05620        433 RTGDVGSVTRDGFLTIH---------DRARDVIRSGGEWIYSAQLENYIMAAPEVVECAV  483 (576)
T ss_pred             ecCceEEEcCCceEEEE---------echhhhhhcCCEEEcHHHHHHHHhcCCCceEEEE
Confidence            99999999999999999         9999999999999999999999999999987643

>PRK05691 peptide synthase; Validated

Probab=99.96  E-value=5.2e-29  Score=249.13  Aligned_cols=181  Identities=18%  Similarity=0.198  Sum_probs=153.7

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeeccc-C----CccC
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQ-G----DYVP   76 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~-~----~~~~   76 (199)
                      .+.++|++++.|...........++|.+++||+++++++.++|.+.++ ..++|.||+||++...+.... .    ....
T Consensus      2426 ~~~~tPs~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~ 2505 (4334)
T PRK05691       2426 ILGFTPSYGSQLAQWLAGQGEQLPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAAS 2505 (4334)
T ss_pred             EEEcCHHHHHHHHHhhhccccCCCceEEEEccccCCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCC
Confidence            467899999998865434444567999999999999999999999874 679999999999865433221 1    1123


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC-------CCCeeecCceEEEcCCCeE
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID-------ELGWHHTGDVGMWLPTLFF  147 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~-------~~g~~~TGD~~~~d~~g~l  147 (199)
                      .++|+|++++.++|+| ++++++|.|+.|||+|+|+++++||+++|+.+.  +.       .++||+|||++++++||++
T Consensus      2506 ~~iG~pi~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l 2584 (4334)
T PRK05691       2506 VPIGRVVGARVAYILD-ADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLV 2584 (4334)
T ss_pred             CccccccCCCEEEEEC-CCCCCCCCCCceEEEecccccCccccCChhhhhhhccCCCCCCCCCceEeccceEEEcCCCCE
Confidence            4689999999999999 789999999999999999999999999999886  21       2359999999999999999


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +|+         ||.|++||.+|++|.|.|||.+|.+||+|.++..
T Consensus      2585 ~~~---------GR~d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V 2621 (4334)
T PRK05691       2585 EYV---------GRIDHQVKIRGFRIELGEIESRLLEHPAVREAVV 2621 (4334)
T ss_pred             EEe---------ecccCeEEeeeEEechHHHHHHHHhCCCcceEEE
Confidence            999         9999999999999999999999999999976543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.96  E-value=1.2e-28  Score=208.63  Aligned_cols=180  Identities=20%  Similarity=0.240  Sum_probs=151.7

Q ss_pred             ccccchhHHHHHHHhh-hhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC-----Ccc
Q psy14311          3 GIYRRNSIWDKLVFKK-VQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG-----DYV   75 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~-~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-----~~~   75 (199)
                      .++.+|++++.++... ......+++|.++++|+++++.+.+++.+.+ ++.+++.||+||++..++.....     ...
T Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  316 (503)
T PRK04813        237 VWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYK  316 (503)
T ss_pred             EEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCC
Confidence            3567899888766443 2334557899999999999999999999998 78899999999997654432211     123


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C---CCCCeeecCceEEEcCCCeEEEE
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I---DELGWHHTGDVGMWLPTLFFFFI  150 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~---~~~g~~~TGD~~~~d~~g~l~~~  150 (199)
                      ..++|+|.++++++++| +++.+++.|+.|||+++++.++.||+++++.+.  +   ...+||+|||++++ ++|++++.
T Consensus       317 ~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~  394 (503)
T PRK04813        317 RLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQ  394 (503)
T ss_pred             CCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEe
Confidence            45799999999999999 789999999999999999999999999998776  2   23359999999999 89999999


Q ss_pred             eeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        151 PMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       151 ~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                               ||.+|+|+.+|++++|.+||+++.+||.|.++..
T Consensus       395 ---------GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  428 (503)
T PRK04813        395 ---------GRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVV  428 (503)
T ss_pred             ---------ccccceEEECcEEeCHHHHHHHHHhCCCcceEEE
Confidence                     9999999999999999999999999999886543

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.96  E-value=1.1e-28  Score=210.91  Aligned_cols=174  Identities=22%  Similarity=0.309  Sum_probs=142.7

Q ss_pred             cccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCcc
Q psy14311          4 IYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP   82 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p   82 (199)
                      +.++|+.+..++...... ....++|. ++||+++++.. .+|.+.+++++++.||+||++..+....  ....+++|.|
T Consensus       245 ~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~~~~~g~~  320 (529)
T PRK07867        245 ANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTP--DTPPGALGPL  320 (529)
T ss_pred             EeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCC--CCCCCCcCCC
Confidence            456788888877543222 22356885 45888887765 5677778999999999999986544322  2345789999


Q ss_pred             ccCcEEEEEeCCCCcccCCCC------------cceEEE-ecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEE
Q psy14311         83 ICCCSVKLVDVPEMDYFAHEG------------KGEVCV-RGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        83 ~~~~~~~v~d~~~~~~~~~g~------------~Gel~i-~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~  148 (199)
                      .++  ++++|++++++++.|+            .|||++ +|++++.||+++|+.+. ...+|||+|||+++++++|+++
T Consensus       321 ~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~  398 (529)
T PRK07867        321 PPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAY  398 (529)
T ss_pred             CCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCCCcEE
Confidence            999  6778877888999988            899998 99999999999998876 4568999999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      +.         ||.+|+|+.+|.+|+|.|||++|..||.|.++.
T Consensus       399 ~~---------GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~  433 (529)
T PRK07867        399 FA---------GRLGDWMRVDGENLGTAPIERILLRYPDATEVA  433 (529)
T ss_pred             Ee---------ccccCeEEECCEEeCHHHHHHHHHhCCCeeEEE
Confidence            99         999999999999999999999999999998754

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.96  E-value=1.2e-28  Score=212.77  Aligned_cols=180  Identities=20%  Similarity=0.278  Sum_probs=141.8

Q ss_pred             CccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC-------
Q psy14311          2 KGIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD-------   73 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-------   73 (199)
                      +.++++|+++..|+...... ....+++.++++|+++++.+.+++++ +++.+++.||+||+++.+.......       
T Consensus       276 t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~  354 (579)
T PLN03102        276 THMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE  354 (579)
T ss_pred             eEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCc
Confidence            34678999999998653222 22356888999999999999998875 6999999999999986443221100       


Q ss_pred             -------ccCCCCCccccCcEEEEEeCCCCcccCC--CCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcC
Q psy14311         74 -------YVPEHVGPPICCCSVKLVDVPEMDYFAH--EGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLP  143 (199)
Q Consensus        74 -------~~~~~~G~p~~~~~~~v~d~~~~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~  143 (199)
                             ...+..+.+++  .+.+.+++.+++++.  ++.|||+++|++++.|||++|+.+. .+.+|||+|||++++|+
T Consensus       355 ~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~  432 (579)
T PLN03102        355 NQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHP  432 (579)
T ss_pred             ccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecCceEEEcC
Confidence                   01122333333  455667667777765  3679999999999999999998887 55689999999999999


Q ss_pred             CCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       144 ~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +|++++.         ||.+|+|+.+|++|+|.|||.+|.+||.|.+...
T Consensus       433 dG~l~i~---------GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~v  473 (579)
T PLN03102        433 DGHVEIK---------DRSKDIIISGGENISSVEVENVLYKYPKVLETAV  473 (579)
T ss_pred             CCeEEEE---------eccCcEEEECCEEECHHHHHHHHHhCCCcceeEE
Confidence            9999999         9999999999999999999999999999987654

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.96  E-value=2.5e-28  Score=209.07  Aligned_cols=179  Identities=19%  Similarity=0.204  Sum_probs=148.1

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC--------
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD--------   73 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--------   73 (199)
                      .++++|+++..|...... ....+++|.++++|++++++++++|++ +++.+++.||+||++.+++......        
T Consensus       271 ~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  349 (542)
T PRK06018        271 FTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGD  349 (542)
T ss_pred             eeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCch
Confidence            456889999888754322 234478999999999999999999999 8999999999999987654332110        


Q ss_pred             ---ccCCCCCccccCcEEEEEeCCCCcccCCC--CcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEE
Q psy14311         74 ---YVPEHVGPPICCCSVKLVDVPEMDYFAHE--GKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        74 ---~~~~~~G~p~~~~~~~v~d~~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~  148 (199)
                         ....++|+|.++++++++| +++++++.+  ..|||+++|+.++.||+++. ......++||+|||++++|++|+++
T Consensus       350 ~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~-~~~~~~~~~~~TGDl~~~~~~g~~~  427 (542)
T PRK06018        350 ARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD-GEILDDDGFFDTGDVATIDAYGYMR  427 (542)
T ss_pred             hhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc-ccEecCCcEEEcCCEEEEcCCccEE
Confidence               0135789999999999999 678877753  57999999999999999942 2225568999999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +.         ||.+|+|+.+|.+|+|.|||.++..||.|.++..
T Consensus       428 ~~---------GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v  463 (542)
T PRK06018        428 IT---------DRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAV  463 (542)
T ss_pred             EE---------ecCCCeEEECCEEECHHHHHHHHHhCCcceeEEE
Confidence            99         9999999999999999999999999999986543

>KOG1180|consensus

Probab=99.96  E-value=8.2e-29  Score=203.13  Aligned_cols=172  Identities=35%  Similarity=0.628  Sum_probs=154.8

Q ss_pred             hHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccccCcEE
Q psy14311          9 SIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCSV   88 (199)
Q Consensus         9 ~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~   88 (199)
                      .+++.|+...++.....+||.+++||+|+++++.+.+.--+.+++.+.||.||+++..+.....+...+.+|.|++.+++
T Consensus       386 ~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~ei  465 (678)
T KOG1180|consen  386 PLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEI  465 (678)
T ss_pred             hhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEE
Confidence            35778888888888789999999999999999999988888889999999999999888888877788899999999999


Q ss_pred             EEEeCCCCcccCCCC--cceEEEecCcccccccCCCcCCC--CCC-CC--eeecCceEEEcCCCeEEEEeeeeeeeEeee
Q psy14311         89 KLVDVPEMDYFAHEG--KGEVCVRGNNVFLGYFKDPELNS--IDE-LG--WHHTGDVGMWLPTLFFFFIPMLVIMLMYTR  161 (199)
Q Consensus        89 ~v~d~~~~~~~~~g~--~Gel~i~~~~~~~gy~~~~~~~~--~~~-~g--~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR  161 (199)
                      +++|++++...+.+.  .|||+|+|+.++.|||+||+.+.  +.. +|  ||+|||+|.+.+||.|.|.         +|
T Consensus       466 KLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkII---------DR  536 (678)
T KOG1180|consen  466 KLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKII---------DR  536 (678)
T ss_pred             EEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEe---------ec
Confidence            999998887776666  79999999999999999999998  444 88  9999999999999999999         88


Q ss_pred             cCeEEE-ecceecccccccccccCCcccc
Q psy14311        162 IGLRIR-SRSRHSLGKRVEGTVHGETKRS  189 (199)
Q Consensus       162 ~~~~i~-~~g~~v~~~eiE~~l~~~~~~~  189 (199)
                      .+|.+| .+|+.|++.-||.++...|=|.
T Consensus       537 KKdLVKlq~GEYIsL~KvEa~l~s~p~V~  565 (678)
T KOG1180|consen  537 KKDLVKLQNGEYISLGKVEAALRSSPYVD  565 (678)
T ss_pred             hhhhhhhcccceeehHHHHHHHhcCcchh
Confidence            888876 4799999999999999988765

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.96  E-value=1.2e-28  Score=212.54  Aligned_cols=176  Identities=20%  Similarity=0.279  Sum_probs=142.4

Q ss_pred             cccchhHHHHHHHhhh-----hhccCCceeEEEEecCCCCHHHHHHHHHHhC------CcEEeecccccCCCceeecccC
Q psy14311          4 IYRRNSIWDKLVFKKV-----QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG------CLVIEGYGQTECVAPITLTIQG   72 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~-----~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~------~~i~~~yG~tE~~~~~~~~~~~   72 (199)
                      ++.+|+++..++....     ....++++|.++++|+++++++++.+.+.++      ..+++.||+||++..++.....
T Consensus       273 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~  352 (579)
T PRK09192        273 ISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLG  352 (579)
T ss_pred             EEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCC
Confidence            3445665555443221     1123478999999999999999999998873      2489999999998755433221


Q ss_pred             C----------------------------ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcC
Q psy14311         73 D----------------------------YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPEL  124 (199)
Q Consensus        73 ~----------------------------~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~  124 (199)
                      .                            ....++|.|+|+++++++| +++++++.|+.|||+++|+.++.||+++++.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~~~~  431 (579)
T PRK09192        353 SGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRDEES  431 (579)
T ss_pred             CCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhhcCCccc
Confidence            0                            0124689999999999999 6789999999999999999999999999443


Q ss_pred             CC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccc
Q psy14311        125 NS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQ  190 (199)
Q Consensus       125 ~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~  190 (199)
                      .. +..++||+|||++++ ++|+++++         ||.+|+|+.+|++|+|.|||++|.+||.|..
T Consensus       432 ~~~~~~dgw~~TGDlg~~-~~G~l~~~---------GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~  488 (579)
T PRK09192        432 QDVLAADGWLDTGDLGYL-LDGYLYIT---------GRAKDLIIINGRNIWPQDIEWIAEQEPELRS  488 (579)
T ss_pred             cccccCCceeeccceeeE-ECCEEEEE---------eccccEEEECCCccCHHHHHHHHHhcCCccC
Confidence            33 567899999999999 89999999         9999999999999999999999999999974

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.96  E-value=2.4e-28  Score=210.10  Aligned_cols=181  Identities=22%  Similarity=0.217  Sum_probs=149.0

Q ss_pred             cccchhHHHHHHHhhh-hhccCCceeEEEE--ecCCCCHHHHHHHHHHhCCcEEe-ecccccCCCceeecccC-------
Q psy14311          4 IYRRNSIWDKLVFKKV-QEDMGGNLRLMLA--GSAPLAGNVLTFLRCALGCLVIE-GYGQTECVAPITLTIQG-------   72 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~-~~~~~~slr~i~~--~G~~~~~~~~~~~~~~~~~~i~~-~yG~tE~~~~~~~~~~~-------   72 (199)
                      +..+|+.+..+..... ....+.+++.+..  .++++++++++.|++.++..++. .||+||++..+......       
T Consensus       303 ~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  382 (567)
T PRK06178        303 TVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDL  382 (567)
T ss_pred             EeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCcccc
Confidence            4566777777765432 2223466777653  45899999999999998877664 79999998755443211       


Q ss_pred             CccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEe
Q psy14311         73 DYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIP  151 (199)
Q Consensus        73 ~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~  151 (199)
                      ...++++|+|+++++++++|++++++++.|+.|||+++|++++.||+++++.+. ...+|||+|||+++++++|+++++ 
T Consensus       383 ~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~i~-  461 (567)
T PRK06178        383 LSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYL-  461 (567)
T ss_pred             ccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcccCCceeecceEEEecCCeEEEE-
Confidence            123567999999999999998889999999999999999999999999998876 445789999999999999999999 


Q ss_pred             eeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                              ||.+|+|+.+|.+++|.|||+++..+|.|.++..
T Consensus       462 --------GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v  495 (567)
T PRK06178        462 --------GRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAV  495 (567)
T ss_pred             --------ecccccEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence                    9999999999999999999999999999986643

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.96  E-value=3.8e-28  Score=214.10  Aligned_cols=182  Identities=10%  Similarity=0.028  Sum_probs=144.6

Q ss_pred             CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecc-cCCccCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTI-QGDYVPEH   78 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~-~~~~~~~~   78 (199)
                      +.+..+|++++.|..... ...++++||.++++|++++++.+.++.+.++ .++.+.||+||+++.+.... .....+++
T Consensus       447 T~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~  526 (728)
T PLN03052        447 TMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAA  526 (728)
T ss_pred             CEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCc
Confidence            346689999999876542 3345589999999999999999999888776 57999999999986443322 22335678


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCC--cceEEEecC--cccccccCCCcCCC-C------CCCCeeecCceEEEcCCCeE
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEG--KGEVCVRGN--NVFLGYFKDPELNS-I------DELGWHHTGDVGMWLPTLFF  147 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~--~Gel~i~~~--~~~~gy~~~~~~~~-~------~~~g~~~TGD~~~~d~~g~l  147 (199)
                      +|.|+++++++|+| ++|++++.|+  .|||+++++  +...+|+++..... +      ....||+|||++++|++|++
T Consensus       527 ~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l  605 (728)
T PLN03052        527 FSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYY  605 (728)
T ss_pred             cccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeE
Confidence            99999999999999 8899999985  599999865  33456666543211 1      12239999999999999999


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceeccccccccccc-CCcccccccc
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVH-GETKRSQSRK  193 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~-~~~~~~~~~~  193 (199)
                      +|+         ||.||+||.+|++|+|.|||++|. .||+|.++..
T Consensus       606 ~i~---------GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaV  643 (728)
T PLN03052        606 RAH---------GRADDTMNLGGIKVSSVEIERVCNAADESVLETAA  643 (728)
T ss_pred             EEE---------ecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEE
Confidence            999         999999999999999999999995 7999876543

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.6e-28  Score=211.64  Aligned_cols=175  Identities=22%  Similarity=0.264  Sum_probs=136.1

Q ss_pred             cccchhHHHHHHHhhh-----hhccCCceeEEEEecCCCCHHHHHHHHHHhC------CcEEeecccccCCCceeecccC
Q psy14311          4 IYRRNSIWDKLVFKKV-----QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG------CLVIEGYGQTECVAPITLTIQG   72 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~-----~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~------~~i~~~yG~tE~~~~~~~~~~~   72 (199)
                      +..+|+.+..++....     ....++++|.+++||+++++++.++|.+.|+      ..+++.||+||++..+......
T Consensus       262 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  341 (578)
T PRK05850        262 FSAAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPG  341 (578)
T ss_pred             EEeCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCC
Confidence            4455665544443211     1223468999999999999999999988873      3689999999987644432111


Q ss_pred             Cc-------------------------cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-
Q psy14311         73 DY-------------------------VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-  126 (199)
Q Consensus        73 ~~-------------------------~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-  126 (199)
                      ..                         ...++|.|. +.+++++|++++.+++.|+.|||+++|+.++.||+++|+.+. 
T Consensus       342 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~  420 (578)
T PRK05850        342 QPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETER  420 (578)
T ss_pred             CCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHH
Confidence            00                         001334443 578999997788999999999999999999999999998876 


Q ss_pred             -CC-----------CCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccc
Q psy14311        127 -ID-----------ELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRS  189 (199)
Q Consensus       127 -~~-----------~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~  189 (199)
                       +.           .++||+|||++++| +|++++.         ||.+|+|+.+|++|+|.|||++|.+||.+.
T Consensus       421 ~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~---------GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~  485 (578)
T PRK05850        421 TFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIV---------GRIKDLLIVDGRNHYPDDIEATIQEITGGR  485 (578)
T ss_pred             HhhcccccccccCCCCCeeeccceeeEE-CCEEEEE---------cccccEEEECCeecCHHHHHHHHHHhcCCc
Confidence             21           25799999999998 9999999         999999999999999999999999998754

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.95  E-value=4e-28  Score=203.71  Aligned_cols=163  Identities=23%  Similarity=0.299  Sum_probs=139.6

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCcc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP   82 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p   82 (199)
                      .+..+|+++..++.....   ..++|.+++||+++++.+.+++.+. ++++++.||+||++.........  ...++|+|
T Consensus       221 ~~~~~P~~~~~l~~~~~~---~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~--~~~~~G~~  294 (458)
T PRK09029        221 HASLVPTQLWRLLDNRSE---PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD--GLAGVGSP  294 (458)
T ss_pred             eeecChHHHHHHHhcccc---CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC--CCCCCCCC
Confidence            345789999888755332   3479999999999999999998864 99999999999998754433222  23569999


Q ss_pred             ccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeee
Q psy14311         83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTR  161 (199)
Q Consensus        83 ~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR  161 (199)
                      ++++++++++            |||+++|+.++.||+++++.+. ...++||+|||++++| +|++++.         ||
T Consensus       295 ~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~---------gR  352 (458)
T PRK09029        295 LPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTIL---------GR  352 (458)
T ss_pred             CCCCEEEEeC------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEe---------cc
Confidence            9999999987            8999999999999999998877 5568999999999999 9999999         99


Q ss_pred             cCeEEEecceecccccccccccCCcccccccc
Q psy14311        162 IGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       162 ~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      .+|+|+.+|.+|+|.|||++|..||.|.+...
T Consensus       353 ~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v  384 (458)
T PRK09029        353 LDNLFFSGGEGIQPEEIERVINQHPLVQQVFV  384 (458)
T ss_pred             cccceeeCCEEeCHHHHHHHHhcCCCcceEEE
Confidence            99999999999999999999999999986543

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=9.1e-28  Score=205.56  Aligned_cols=162  Identities=22%  Similarity=0.305  Sum_probs=138.4

Q ss_pred             ccCCceeEEEEecCCCCHHHHHHHHHH---hCC---cEEeecccccCCCceeecccC-----------------------
Q psy14311         22 DMGGNLRLMLAGSAPLAGNVLTFLRCA---LGC---LVIEGYGQTECVAPITLTIQG-----------------------   72 (199)
Q Consensus        22 ~~~~slr~i~~~G~~~~~~~~~~~~~~---~~~---~i~~~yG~tE~~~~~~~~~~~-----------------------   72 (199)
                      .+++++|.++++|+++++++.+++.+.   ++.   .+++.||+||++..++.....                       
T Consensus       273 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK07768        273 FDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPAT  352 (545)
T ss_pred             CCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccC
Confidence            344789999999999999999998874   454   499999999998755432211                       


Q ss_pred             ---CccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEE
Q psy14311         73 ---DYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        73 ---~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~  148 (199)
                         ....+++|+|+++++++++| +++++++.|+.|||+++++.++.||++++.... ...++||+|||++++|++|+++
T Consensus       353 ~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~  431 (545)
T PRK07768        353 KGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVV  431 (545)
T ss_pred             CCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEE
Confidence               11235799999999999999 778999999999999999999999998765554 5567899999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ++         ||.+|+|+.+|.+|+|.|||.+|.+||.|.++..
T Consensus       432 ~~---------GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v  467 (545)
T PRK07768        432 VC---------GRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNA  467 (545)
T ss_pred             EE---------ccccceEEECCEecCHHHHHHHHHhCcccccceE
Confidence            99         9999999999999999999999999999987543

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.95  E-value=5.8e-28  Score=206.84  Aligned_cols=176  Identities=17%  Similarity=0.232  Sum_probs=138.6

Q ss_pred             cccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCcc
Q psy14311          4 IYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP   82 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p   82 (199)
                      +..+|+.+..++..+... ....+++.+  .|++++++..+.|.+.+++++++.||+||++.++....  ....+++|+|
T Consensus       243 ~~~~p~~l~~l~~~~~~~~~~~~~l~~~--~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~~~~~vG~p  318 (540)
T PRK13388        243 FNYVGKPLAYILATPERPDDADNPLRVA--FGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP--GTPPGSIGRG  318 (540)
T ss_pred             EEehHHHHHHHHhCCCCccccccceEEE--ECCCCCHHHHHHHHHHhCCceecccccccccceeecCC--CCCCCCCCCC
Confidence            446788877776443221 122456643  36677888889999889999999999999987665332  2346789999


Q ss_pred             ccCcEEE-----------EEeCCCCccc-CCCCcceEEEe-cCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEE
Q psy14311         83 ICCCSVK-----------LVDVPEMDYF-AHEGKGEVCVR-GNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        83 ~~~~~~~-----------v~d~~~~~~~-~~g~~Gel~i~-~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~  148 (199)
                      ++++++.           ++| ++|+.+ +.+..|||+++ |++++.||+++|+.+. ...+|||+|||++++|++|+++
T Consensus       319 ~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~l~  397 (540)
T PRK13388        319 APGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIY  397 (540)
T ss_pred             CCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCcEE
Confidence            9997653           334 445555 34678999998 9999999999998876 4457899999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +.         ||.+|+|+.+|.+|+|.|||++|.+||.|.++..
T Consensus       398 i~---------GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v  433 (540)
T PRK13388        398 FA---------GRTADWMRVDGENLSAAPIERILLRHPAINRVAV  433 (540)
T ss_pred             Ee---------ccCCceEEECCEEeCHHHHHHHHHhCCCceEEEE
Confidence            99         9999999999999999999999999999886543

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.95  E-value=1.3e-27  Score=194.82  Aligned_cols=155  Identities=20%  Similarity=0.257  Sum_probs=131.9

Q ss_pred             cchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccccC
Q psy14311          6 RRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC   85 (199)
Q Consensus         6 ~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~   85 (199)
                      .+|+.+..++..........++|.++++|+++++++.+++.+ +++++++.||+||++..+.          ..|+|+++
T Consensus       132 ~~p~~l~~~~~~~~~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g  200 (358)
T PRK07824        132 LVPMQLAKALDDPAATAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDG  200 (358)
T ss_pred             ecHHHHHHHHhCccccCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCC
Confidence            467777666554333344578999999999999999999886 4899999999999876432          35889999


Q ss_pred             cEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeE
Q psy14311         86 CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLR  165 (199)
Q Consensus        86 ~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~  165 (199)
                      +++++.+            |||+++|+.++.||+++++...+..++||+|||++++ ++|++++.         ||.+|+
T Consensus       201 ~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~~~~~~g~~~TGDl~~~-~~g~l~i~---------GR~~d~  258 (358)
T PRK07824        201 VRVRVED------------GRIALGGPTLAKGYRNPVDPDPFAEPGWFRTDDLGAL-DDGVLTVL---------GRADDA  258 (358)
T ss_pred             CEEEecC------------CEEEEecCccccccCCCcccccccCCCceecccEEEE-eCCEEEEE---------eccCCe
Confidence            9999844            9999999999999999987655556789999999999 89999999         999999


Q ss_pred             EEecceecccccccccccCCcccccccc
Q psy14311        166 IRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       166 i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+.+|++|+|.|||.+|..||.|.+...
T Consensus       259 i~~~G~~v~p~eIE~~l~~~~~V~~~~v  286 (358)
T PRK07824        259 ISTGGLTVLPQVVEAALATHPAVADCAV  286 (358)
T ss_pred             EEECCEEECHHHHHHHHHhCCCcceEEE
Confidence            9999999999999999999999986543

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.95  E-value=2e-27  Score=197.90  Aligned_cols=172  Identities=23%  Similarity=0.344  Sum_probs=143.2

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC-ccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD-YVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~G~   81 (199)
                      .+..+|++++.|+......   +++|.++++|+++++++.+++++ +++.+++.||+||++..+....... ....++|+
T Consensus       200 ~~~~~P~~l~~l~~~~~~~---~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  275 (436)
T TIGR01923       200 HISLVPTQLNRLLDEGGHN---ENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGR  275 (436)
T ss_pred             EEEeHHHHHHHHHhCcCCC---CceEEEEECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCc
Confidence            4567899999988654322   67999999999999999998876 5999999999999987655443322 22235999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYT  160 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~g  160 (199)
                      |++++++++.+.+.      ++.|||+++++.++.||+++++.+. ...++||+|||++++|++|++++.         |
T Consensus       276 ~~~~~~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~---------G  340 (436)
T TIGR01923       276 PLAGREIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVL---------G  340 (436)
T ss_pred             cCCCcEEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEe---------c
Confidence            99999999844232      2679999999999999999887776 556799999999999999999999         9


Q ss_pred             ecCeEEEecceecccccccccccCCcccccccc
Q psy14311        161 RIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       161 R~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |.+|+|+.+|.+|++.+||.+|..||.|.++..
T Consensus       341 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  373 (436)
T TIGR01923       341 RRDDLIISGGENIYPEEIETVLYQHPGIQEAVV  373 (436)
T ss_pred             cccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEE
Confidence            999999999999999999999999999876543

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.95  E-value=2.7e-27  Score=202.54  Aligned_cols=180  Identities=20%  Similarity=0.196  Sum_probs=144.5

Q ss_pred             ccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC---------
Q psy14311          3 GIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG---------   72 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~---------   72 (199)
                      .++++|++++.|++..... ....+++.++++|+++++++.+.+++. ++++++.||+||+++.+......         
T Consensus       273 ~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  351 (545)
T PRK08162        273 HYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLD  351 (545)
T ss_pred             EEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCcc
Confidence            4678999999998654332 223456667889999999999998874 89999999999997544433211         


Q ss_pred             --CccCCCCCcccc-CcEEEEEeCCCCcccCC-C-CcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCe
Q psy14311         73 --DYVPEHVGPPIC-CCSVKLVDVPEMDYFAH-E-GKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLF  146 (199)
Q Consensus        73 --~~~~~~~G~p~~-~~~~~v~d~~~~~~~~~-g-~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~  146 (199)
                        .....++|.+.+ ...++++|++++++++. | +.|||+++|+.++.||+++++.+. ...++||+|||++++|++|+
T Consensus       352 ~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~  431 (545)
T PRK08162        352 ERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGY  431 (545)
T ss_pred             chhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCcc
Confidence              011245666655 34577889778888876 3 369999999999999999999887 55678999999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      ++++         ||.+|+|+.+|.+|+|.|||.+|..||.|.++.
T Consensus       432 l~~~---------GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~  468 (545)
T PRK08162        432 IKIK---------DRSKDIIISGGENISSIEVEDVLYRHPAVLVAA  468 (545)
T ss_pred             EEEE---------ecccceEEeCCEEECHHHHHHHHHhCCcccEEE
Confidence            9999         999999999999999999999999999988653

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.7e-27  Score=216.05  Aligned_cols=172  Identities=14%  Similarity=0.089  Sum_probs=135.9

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecccCCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQGDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G   80 (199)
                      .++++|++++.|+..... ....+++|.++  |+.+++++++++.+.|+ +.+++.||+||++......  ....++++|
T Consensus       697 ~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~--~~~~~~svG  772 (994)
T PRK07868        697 VVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV--SGAKIGSKG  772 (994)
T ss_pred             EEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc--CCCCCcccC
Confidence            467899999998865322 23346899876  44599999999999986 8899999999987644321  234568999


Q ss_pred             ccccCc-EEEEE-----------eCCCC--cccCCCCcceEEEecCcccccccCCCcCCC----C-CCCCeeecCceEEE
Q psy14311         81 PPICCC-SVKLV-----------DVPEM--DYFAHEGKGEVCVRGNNVFLGYFKDPELNS----I-DELGWHHTGDVGMW  141 (199)
Q Consensus        81 ~p~~~~-~~~v~-----------d~~~~--~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~----~-~~~g~~~TGD~~~~  141 (199)
                      +|++++ ++++.           | ++|  +.++.|+.|||+++++..    + +|+.+.    + ..+|||+|||++++
T Consensus       773 ~p~pg~~~v~i~~~d~~~g~li~d-~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~  846 (994)
T PRK07868        773 RPLPGAGRVELAAYDPEHDLILED-DRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRR  846 (994)
T ss_pred             CccCCCCceeEEEecCcCCceeec-CCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEE
Confidence            999997 66653           3 455  668889999999998753    3 344322    2 24799999999999


Q ss_pred             cCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        142 LPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       142 d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+||+|+|+         ||.||+||++|.+|+|.|||++|.+||.|.++..
T Consensus       847 d~dG~l~~~---------GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaV  889 (994)
T PRK07868        847 DDDGDYWLV---------DRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVT  889 (994)
T ss_pred             cCCCCEEEe---------ccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEE
Confidence            999999999         9999999999999999999999999999987543

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.93  E-value=8e-26  Score=195.78  Aligned_cols=176  Identities=19%  Similarity=0.163  Sum_probs=134.8

Q ss_pred             ccccchhHHHHHHHhhhhhc-cCCceeEEEEecCCCCHHHHHHHHHHhCC-cEEeecccccCCCceeecccCCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQED-MGGNLRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~-~~~slr~i~~~G~~~~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~G   80 (199)
                      .++++|++++.++....... ...++|.+  +|+++++++++.|.+.++. .+++.||+||++..+...   ...++++|
T Consensus       291 ~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g  365 (600)
T PRK08279        291 AFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVG  365 (600)
T ss_pred             EEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCcccc
Confidence            35678999988876533222 23567754  4788999999999999876 599999999987643321   22445677


Q ss_pred             cccc----CcEEEEEeCCCC----------cccCCCCcceEE--EecCcccccccCCCcCCC--C------CCCCeeecC
Q psy14311         81 PPIC----CCSVKLVDVPEM----------DYFAHEGKGEVC--VRGNNVFLGYFKDPELNS--I------DELGWHHTG  136 (199)
Q Consensus        81 ~p~~----~~~~~v~d~~~~----------~~~~~g~~Gel~--i~~~~~~~gy~~~~~~~~--~------~~~g~~~TG  136 (199)
                      ++.+    +..+...+++.+          .+++.|+.||++  +.+++++.|| ++++.+.  +      ..++||+||
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TG  444 (600)
T PRK08279        366 RVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTG  444 (600)
T ss_pred             cccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeec
Confidence            7655    444333332222          357889999998  6789999999 8887664  1      246899999


Q ss_pred             ceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        137 DVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       137 D~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |++++|++|++++.         ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       445 Dlg~~~~dG~l~~~---------GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v  492 (600)
T PRK08279        445 DLMRDDGFGHAQFV---------DRLGDTFRWKGENVATTEVENALSGFPGVEEAVV  492 (600)
T ss_pred             ceEEEcCCccEEEe---------cccCCeEEECCcccCHHHHHHHHhcCCCcceEEE
Confidence            99999999999999         9999999999999999999999999999987654

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2.5e-25  Score=189.37  Aligned_cols=157  Identities=18%  Similarity=0.185  Sum_probs=131.5

Q ss_pred             cCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCCccCCCCC--ccccCcEEEEEeCCCCccc
Q psy14311         23 MGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDYVPEHVG--PPICCCSVKLVDVPEMDYF   99 (199)
Q Consensus        23 ~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G--~p~~~~~~~v~d~~~~~~~   99 (199)
                      ..+++|.++++|+++++++.+++++.+ +..+++.||+||++.+.......  ...+.|  ++.++..++++| ++++++
T Consensus       294 ~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~g~~~~~~~~~~~i~~-~~~~~~  370 (533)
T PRK07798        294 DLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK--GAVHTGGPRFTIGPRTVVLD-EDGNPV  370 (533)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC--CCccCCCCccCCCceEEEEC-CCCCCC
Confidence            447899999999999999999999988 78899999999997654433221  112334  788899999999 678899


Q ss_pred             CCCCc--ceEEEecCcccccccCCCcCCC--C---CCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEeccee
Q psy14311        100 AHEGK--GEVCVRGNNVFLGYFKDPELNS--I---DELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRH  172 (199)
Q Consensus       100 ~~g~~--Gel~i~~~~~~~gy~~~~~~~~--~---~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~  172 (199)
                      +.|+.  |+++ .++.++.||+++++.+.  +   ...+||+|||++++|++|++++.         ||.+++|+.+|.+
T Consensus       371 ~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~---------GR~~~~i~~~G~~  440 (533)
T PRK07798        371 EPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLL---------GRGSVCINTGGEK  440 (533)
T ss_pred             CCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEE---------ccccceEecCCEE
Confidence            99887  6665 56689999999998776  2   23469999999999999999999         9999999999999


Q ss_pred             cccccccccccCCccccccc
Q psy14311        173 SLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       173 v~~~eiE~~l~~~~~~~~~~  192 (199)
                      |+|.|||+++.++|.|.+..
T Consensus       441 v~~~eIE~~l~~~~~v~~~~  460 (533)
T PRK07798        441 VFPEEVEEALKAHPDVADAL  460 (533)
T ss_pred             eCHHHHHHHHHhCccceeEE
Confidence            99999999999999987654

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.91  E-value=4.2e-24  Score=178.03  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=128.3

Q ss_pred             CccccchhHHHHHHHhhhhhc---cCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCC-ceeecccCCccCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQED---MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVA-PITLTIQGDYVPE   77 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~---~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~-~~~~~~~~~~~~~   77 (199)
                      +.++++|+++..|+.......   ...++|.++++|+++++++.+.+.+.|++++++.||+||+++ .+...... .   
T Consensus       169 t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~---  244 (422)
T TIGR02155       169 DIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-T---  244 (422)
T ss_pred             CEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-c---
Confidence            356789999999885432221   125799999999999999999999999999999999999853 22222111 1   


Q ss_pred             CCCccc--cCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCC-C-----eEEE
Q psy14311         78 HVGPPI--CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPT-L-----FFFF  149 (199)
Q Consensus        78 ~~G~p~--~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~-g-----~l~~  149 (199)
                      ..|.++  +++.++|+|+++++++++|+.|||++++..-           ...+.+||+|||+++++++ |     ++++
T Consensus       245 ~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~~-----------~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i  313 (422)
T TIGR02155       245 QDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLTK-----------EALPVIRYRTRDLTRLLPGTARTMRRMDRI  313 (422)
T ss_pred             CCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCCc-----------cccceeeEEcCcEEEEECCCCCcccccccc
Confidence            123333  3577789998899999999999999986321           0224679999999999875 4     5678


Q ss_pred             EeeeeeeeEeeecCeEEEecceecccccccccccCCcccc
Q psy14311        150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRS  189 (199)
Q Consensus       150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~  189 (199)
                      .         ||.+|+|+.+|.+|+|.|||.+|..||.|.
T Consensus       314 ~---------GR~~d~i~~~G~~v~p~eie~~l~~~~~v~  344 (422)
T TIGR02155       314 T---------GRSDDMLIIRGVNVFPTQLEEVILKMDELS  344 (422)
T ss_pred             c---------CccCCeEEECCEEECHHHHHHHHHhCcCcC
Confidence            8         999999999999999999999999999996

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.91  E-value=1e-23  Score=175.05  Aligned_cols=150  Identities=15%  Similarity=0.074  Sum_probs=124.8

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCcc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPP   82 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p   82 (199)
                      .++++|+++..+......   ..+++.++++|+++++++.+.+++. +.++++.||+||++++....  .....+++|+|
T Consensus       193 ~~~~~P~~~~~l~~~~~~---~~~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~G~p  266 (414)
T PRK08308        193 ILYAVPLMLHILGRLLPG---TFQFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP--DMKSHLDLGNP  266 (414)
T ss_pred             EEEcCHHHHHHHHhcCCc---cccccEEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeeecC--CCCCCCccCcc
Confidence            356789999888754321   2468999999999999999999886 67899999999998754322  22345789999


Q ss_pred             ccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeec
Q psy14311         83 ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRI  162 (199)
Q Consensus        83 ~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~  162 (199)
                      ++++++++.+ +      .++.||+++++                 .++||+|||++++|++|++++.         ||.
T Consensus       267 ~~~~~~~~~~-~------~~~~gel~v~~-----------------~~~~~~TGDl~~~~~dg~l~~~---------GR~  313 (414)
T PRK08308        267 LPHVSVSAGS-D------ENAPEEIVVKM-----------------GDKEIFTKDLGYKSERGTLHFM---------GRM  313 (414)
T ss_pred             CCCeEEEEec-C------CCCCceEEEEc-----------------CCceEECCceEEECCCccEEEe---------ccc
Confidence            9999999876 2      25579999964                 2579999999999999999999         999


Q ss_pred             CeEEEecceecccccccccccCCcccccc
Q psy14311        163 GLRIRSRSRHSLGKRVEGTVHGETKRSQS  191 (199)
Q Consensus       163 ~~~i~~~g~~v~~~eiE~~l~~~~~~~~~  191 (199)
                      +|+|+.+|.+|+|.|||+++.+||.|.++
T Consensus       314 ~~~ik~~G~~v~p~eIE~~l~~~~~v~~a  342 (414)
T PRK08308        314 DDVINVSGLNVYPIEVEDVMLRLPGVQEA  342 (414)
T ss_pred             CCeEEECCEEECHHHHHHHHHhCCCeeEE
Confidence            99999999999999999999999999865

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.84  E-value=1e-20  Score=165.08  Aligned_cols=173  Identities=18%  Similarity=0.235  Sum_probs=144.2

Q ss_pred             cccchhHHHHHHHhhhhhccC---CceeEEEEecCCCCHHHHHHHHHHh--CCcEEeecccccCCCceeecccCCcc--C
Q psy14311          4 IYRRNSIWDKLVFKKVQEDMG---GNLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTECVAPITLTIQGDYV--P   76 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~~~~~~---~slr~i~~~G~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~--~   76 (199)
                      +..+|+++..++.........   ..+|.++++|+.++.++...+....  ...+.+.||+||+...+.........  .
T Consensus       461 ~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~  540 (642)
T COG1020         461 LLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESR  540 (642)
T ss_pred             EEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCC
Confidence            347888888887652222222   3499999999999999999888765  36799999999976654433322222  3


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeee
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLV  154 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~  154 (199)
                      .++|+|+++..+.++| +..+++|.|..||+++.|.++.+||+++|+.+.  +..+.+|+|||++++.++|.+.+.    
T Consensus       541 ~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~l----  615 (642)
T COG1020         541 VPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYL----  615 (642)
T ss_pred             CCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEe----
Confidence            5899999999999999 899999999999999999999999999999998  333249999999999999999999    


Q ss_pred             eeeEeeecCeEEEecceecccccccccccCCc
Q psy14311        155 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGET  186 (199)
Q Consensus       155 ~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~  186 (199)
                           ||.|+++|.+|.++.+.|||.++.+||
T Consensus       616 -----gr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         616 -----GRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             -----ccccceeEeceEecCcHHHHHHHhcCC
Confidence                 999999999999999999999998876

>KOG1179|consensus

Probab=99.84  E-value=1.8e-20  Score=154.78  Aligned_cols=169  Identities=16%  Similarity=0.119  Sum_probs=131.1

Q ss_pred             hhHHHHHHHhhhhhccC-CceeEEEEecCCCCHHHHHHHHHHhCCc-EEeecccccCCCceeecccCCccCCCCCcc---
Q psy14311          8 NSIWDKLVFKKVQEDMG-GNLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHVGPP---   82 (199)
Q Consensus         8 P~~~~~l~~~~~~~~~~-~slr~i~~~G~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p---   82 (199)
                      --+++.|+.++...... +.+|.++  |..+.+++|+.|.++||.. |.+.||+||.....++..   ...+.+|+.   
T Consensus       339 GElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d---~~vGA~G~~~~~  413 (649)
T KOG1179|consen  339 GELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYD---GRVGACGFMSRL  413 (649)
T ss_pred             HHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeec---Cccccccchhhh
Confidence            35678888887665554 7799888  9999999999999999865 999999999877554432   233444442   


Q ss_pred             ---ccCcEEEEEeCCCCcc----------cCCCCcceEEEe--c--C-cccccccCCCcCCC--------CCCCCeeecC
Q psy14311         83 ---ICCCSVKLVDVPEMDY----------FAHEGKGEVCVR--G--N-NVFLGYFKDPELNS--------IDELGWHHTG  136 (199)
Q Consensus        83 ---~~~~~~~v~d~~~~~~----------~~~g~~Gel~i~--~--~-~~~~gy~~~~~~~~--------~~~~g~~~TG  136 (199)
                         +--+++.-+|++++++          |++|++|.|+-+  .  | .-+.||.++++.+.        ...|-||.||
T Consensus       414 ~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tG  493 (649)
T KOG1179|consen  414 LKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTG  493 (649)
T ss_pred             hhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeC
Confidence               2234555567777764          789999977554  2  2 34899999777665        3456699999


Q ss_pred             ceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCccccc
Q psy14311        137 DVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQ  190 (199)
Q Consensus       137 D~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~  190 (199)
                      |+-.+|+.|++||.         +|.+|.+.|+|+||++.|||++|.....+.+
T Consensus       494 DlLv~D~~GylYF~---------DRtGDTFRWKGENVsTtEVe~~l~~~~~~~d  538 (649)
T KOG1179|consen  494 DLLVADELGYLYFK---------DRTGDTFRWKGENVSTTEVEDVLSALDFLQD  538 (649)
T ss_pred             cEEEEecCCcEEEe---------ccCCCceeecCCcccHHHHHHHHhhhccccc
Confidence            99999999999999         9999999999999999999999987665553

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.82  E-value=3.4e-20  Score=152.73  Aligned_cols=140  Identities=16%  Similarity=0.067  Sum_probs=108.2

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCC-cEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      .++++|++++.|...+   ..+++++. +++|+++++++++.+.+. +. .+++.||+||+++++....     +...++
T Consensus       187 ~~~~~P~~l~~l~~~~---~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~  256 (386)
T TIGR02372       187 LIVGTPFIWEQLADLD---YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFR  256 (386)
T ss_pred             EEEECcHHHHHHHhhC---cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcc
Confidence            4568999999987542   33566776 678999999999999886 64 6999999999987554321     234567


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTR  161 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR  161 (199)
                      |+|++++.+ +  ++..           .|+                 ..|++|||++++|++|+|+|.         ||
T Consensus       257 ~~p~~~~~~-~--~~~~-----------~g~-----------------~~~~~tgD~g~~d~~G~l~i~---------GR  296 (386)
T TIGR02372       257 LLPDLACFA-D--TLSS-----------AGL-----------------ARRLDLQDRLAWDKDGGFTIL---------GR  296 (386)
T ss_pred             cCCCccccC-C--CccC-----------CCc-----------------cceeecCceEEEcCCCcEEEe---------cc
Confidence            788776543 1  1110           011                 236899999999999999999         99


Q ss_pred             cCeEEEecceecccccccccccCCccccccc
Q psy14311        162 IGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       162 ~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      .+|+|+.+|++|+|.|||++|.+||.|.+..
T Consensus       297 ~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~  327 (386)
T TIGR02372       297 KDEILQVGGVNVSPGHVRDILERNPRVRAAA  327 (386)
T ss_pred             cCCEEEECCEEEcHHHHHHHHHcCCCceEEE
Confidence            9999999999999999999999999998753

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.80  E-value=3.6e-19  Score=149.35  Aligned_cols=166  Identities=16%  Similarity=0.072  Sum_probs=115.6

Q ss_pred             ccccchhHHHHHHHhhhhhc---cCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQED---MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV   79 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~---~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~   79 (199)
                      .+.++|+.+..|+.......   ...++|.++++|+++++++.+++.+.||+++++.||+||++. +..+..   ..+ .
T Consensus       179 ~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~---~~g-~  253 (445)
T TIGR03335       179 GIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQA---VAG-L  253 (445)
T ss_pred             EEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecC---CCC-c
Confidence            45678888777764322221   236899999999999999999999999999999999999863 222211   111 2


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEE-cCC----CeEEEEeeee
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMW-LPT----LFFFFIPMLV  154 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~-d~~----g~l~~~~r~~  154 (199)
                      ..+.+.+.+.|+|+++++++++|+.|||++++-.-..    .++..   +--=|+|||++++ ..+    |.-+.    +
T Consensus       254 h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~----~r~~~---PliRYrtgD~~~~~~~~~C~CGr~~~----r  322 (445)
T TIGR03335       254 HVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG----ERCGS---LLINYDTEDTTVVISRDRCPCGRTHM----R  322 (445)
T ss_pred             cccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCC----ccCCc---eEEEeecCceEEEecCCCCCCCCCcc----e
Confidence            2233568899999888899999999999997532210    00000   0012899999986 222    32111    1


Q ss_pred             eeeEeeecCeEEEecceecccccccccccCC
Q psy14311        155 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGE  185 (199)
Q Consensus       155 ~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~  185 (199)
                      +. .+||.||+++++|.+|+|.+||++|.++
T Consensus       323 ~~-~~gR~dd~~~~~g~~~~p~~ie~~l~~~  352 (445)
T TIGR03335       323 IL-NPEREAETIWISGVPFNRVDVERAVFQR  352 (445)
T ss_pred             eC-CCcccCceEEECCEEeCHHHHHHHHhcc
Confidence            22 2499999999999999999999999985

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.79  E-value=8.6e-19  Score=143.32  Aligned_cols=177  Identities=16%  Similarity=0.066  Sum_probs=132.9

Q ss_pred             ccccchhHHHHHHHhhhhh---ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQE---DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV   79 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~---~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~   79 (199)
                      .+.++|+.+..|.......   ....+||.+++|+|+++++..+.+.+.||+..++.||.||..+.....+....   -.
T Consensus       185 vI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~---gl  261 (438)
T COG1541         185 VIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN---GL  261 (438)
T ss_pred             EEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc---CC
Confidence            4678999999998765554   33478999999999999999999999999999999999999776322222111   11


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      --.-+++.+.++||+++++++.|+.|||++..-.      +.     ..+---|+|||+.....+-.-+-..-+++..+.
T Consensus       262 hi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~------~~-----~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~  330 (438)
T COG1541         262 HIWEDHFIFEIVDPETGEQLPDGERGELVITTLT------KE-----GMPLIRYRTGDITVILSDPCGCGRTHRRIERIE  330 (438)
T ss_pred             CcchhhceeeeecCCcCccCCCCCeeEEEEEecc------cc-----CcceEEEEcCCeeEecccCCCCCCccccccccC
Confidence            2235678999999999999999999999996422      00     001113899999999763211111223455677


Q ss_pred             eecCeEEEecceecccccccccccCCcccc-cccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRS-QSRK  193 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~-~~~~  193 (199)
                      ||.||++..+|.+|+|.+||.+|.+.+.+. .-|.
T Consensus       331 GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi  365 (438)
T COG1541         331 GRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQI  365 (438)
T ss_pred             cccccEEEECCEEeCHHHHHHHHhcccCCCceEEE
Confidence            999999999999999999999999988776 4443

>PTZ00297 pantothenate kinase; Provisional

Probab=99.35  E-value=2.1e-12  Score=120.23  Aligned_cols=144  Identities=15%  Similarity=0.105  Sum_probs=105.7

Q ss_pred             hhHHHHHHHhhhhhccCCceeEEEEecC--CCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCccccC
Q psy14311          8 NSIWDKLVFKKVQEDMGGNLRLMLAGSA--PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC   85 (199)
Q Consensus         8 P~~~~~l~~~~~~~~~~~slr~i~~~G~--~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~   85 (199)
                      +.+++.|+..+.+.....++|.+++||+  +++..+.     . +++++..||.||+.   +.+......  ..|.|+|+
T Consensus       740 ~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----~-~i~i~~g~glTE~~---~~~~~~~~~--~~G~Plpg  808 (1452)
T PTZ00297        740 SSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----E-HISVCYVPCLREVF---FLPSEGVFC--VDGTPAPS  808 (1452)
T ss_pred             cHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----C-CceEEEecceEEee---eecCCCCcc--cCCeecCc
Confidence            4477788888888888889999999984  4443322     2 67899999999953   223332222  34999999


Q ss_pred             cEEEEEeC-CCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCe
Q psy14311         86 CSVKLVDV-PEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGL  164 (199)
Q Consensus        86 ~~~~v~d~-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~  164 (199)
                      +++++.+. +.+..   +..|||+++       |+++|+.|....++|+         +||+|.|+         ||++|
T Consensus       809 vEvKI~~~~E~~~~---~~~GEIlvr-------~~kdpe~T~e~~~gW~---------~dG~L~Ii---------dRkKd  860 (1452)
T PTZ00297        809 LQVDLEPFDEPSDG---AGIGQLVLA-------KKGEPRRTLPIAAQWK---------RDRTLRLL---------GPPLG  860 (1452)
T ss_pred             eEEEEcccccccCC---CCCCeEEEE-------ECCChHHHHHhhCcCc---------cCCeEEEE---------ecccc
Confidence            99999873 22221   235999995       4588888762224664         68999999         88888


Q ss_pred             EE-EecceecccccccccccCCccccc
Q psy14311        165 RI-RSRSRHSLGKRVEGTVHGETKRSQ  190 (199)
Q Consensus       165 ~i-~~~g~~v~~~eiE~~l~~~~~~~~  190 (199)
                      +| ..+|++|+|..||+.+..+|-|.+
T Consensus       861 likls~GEyVaP~~IE~~l~~sp~I~q  887 (1452)
T PTZ00297        861 ILLPVAYEYVIAAELERIFSQSRYVND  887 (1452)
T ss_pred             ceECCCCcEEcHHHHHHHHhcCCCccE
Confidence            86 578999999999999999998874

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.34  E-value=4.6e-12  Score=105.50  Aligned_cols=162  Identities=9%  Similarity=-0.013  Sum_probs=101.4

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      +.+.+.|+.+..|+..........+++.++++||+++++..+.+++.||+++++.||+|| +.++..+..     +..-.
T Consensus       189 ~~L~g~pS~l~~LA~~~~~~~l~~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~-----g~lHl  262 (430)
T TIGR02304       189 SIIVAPPSVLRALALEVMEGELTIKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRC-----GTLHL  262 (430)
T ss_pred             CEEEEcHHHHHHHHHHHHhcCCCCCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCC-----CCEEE
Confidence            357789999999987543333235799999999999999999999999999999999999 554433321     11111


Q ss_pred             cccCcEEE--EEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCC----CeEEEEeeeee
Q psy14311         82 PICCCSVK--LVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPT----LFFFFIPMLVI  155 (199)
Q Consensus        82 p~~~~~~~--v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~----g~l~~~~r~~~  155 (199)
                      --+.+.+.  ++|+ .+++       +.+++      ++.|...     +--=|+|||++...++    |.-+    ..+
T Consensus       263 ~ed~~~vE~~ivD~-~~~~-------~~ViT------~L~n~~~-----PlIRYrtGD~~~~~~~~C~CGr~~----~~i  319 (430)
T TIGR02304       263 NEDLVHIEKQYLDE-HKRF-------VPIIT------DFTRTTQ-----PIVRYRLNDILVESEQPCSCGSAT----MAI  319 (430)
T ss_pred             ccccEEEEeeEECC-CCce-------EEEEe------cCCCccc-----eEEeeeCCCEEEeCCCCCCCCCcc----ccc
Confidence            11223333  7884 3332       23443      2322211     1112899999887544    3321    122


Q ss_pred             eeEeeecCeEEEe---c--ceeccccccccccc-CCccccccc
Q psy14311        156 MLMYTRIGLRIRS---R--SRHSLGKRVEGTVH-GETKRSQSR  192 (199)
Q Consensus       156 ~~~~gR~~~~i~~---~--g~~v~~~eiE~~l~-~~~~~~~~~  192 (199)
                      ..+.||.+|+++.   +  +.+|+|..++.++. ..+.+.+.|
T Consensus       320 ~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQ  362 (430)
T TIGR02304       320 ERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYR  362 (430)
T ss_pred             CCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEE
Confidence            3455999999875   3  45568888887744 456665443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.04  E-value=1.3e-10  Score=94.89  Aligned_cols=51  Identities=12%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             CCCCeeecCceEEE-cCCCeEEEEeeeeeeeEeeecCeEEEecc---eecccccccccccCCcccccccc
Q psy14311        128 DELGWHHTGDVGMW-LPTLFFFFIPMLVIMLMYTRIGLRIRSRS---RHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       128 ~~~g~~~TGD~~~~-d~~g~l~~~~r~~~~~~~gR~~~~i~~~g---~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ..+|||+|||+|++ |++|+|+|+         ||.+     +|   ++|+|. ||++|.+||+|.++..
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~---------gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaV  260 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWS---------DGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAI  260 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEE---------ecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEE
Confidence            47899999999998 799999999         8876     77   799999 9999999999987654

>KOG1178|consensus

Probab=98.63  E-value=1.5e-07  Score=84.93  Aligned_cols=161  Identities=15%  Similarity=-0.029  Sum_probs=101.3

Q ss_pred             CceeEEEEecCCCCHHHHHHHHHHhCCc-EEeecccccCCCceeecccCCcc----CC---CCCcccc----CcEEEEEe
Q psy14311         25 GNLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYV----PE---HVGPPIC----CCSVKLVD   92 (199)
Q Consensus        25 ~slr~i~~~G~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~~~----~~---~~G~p~~----~~~~~v~d   92 (199)
                      +.|+..+.+|+|....++..+...+-.. +..-|++++..+......-.+..    ..   .+.+-..    ...+....
T Consensus       327 ~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~  406 (1032)
T KOG1178|consen  327 SCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY  406 (1032)
T ss_pred             hhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee
Confidence            4689999999999998888665554222 23348888887766543221110    00   0111000    12222333


Q ss_pred             CCCCcccCCCCcceEEEe----cCcccccccCCCcCCC-------CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeee
Q psy14311         93 VPEMDYFAHEGKGEVCVR----GNNVFLGYFKDPELNS-------IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTR  161 (199)
Q Consensus        93 ~~~~~~~~~g~~Gel~i~----~~~~~~gy~~~~~~~~-------~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR  161 (199)
                       ..+.+++.++.+.....    +.++..| ++.|+...       ...+..|+|||.++.-++|.+.+.         ||
T Consensus       407 -~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~---------GR  475 (1032)
T KOG1178|consen  407 -RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEIS---------GR  475 (1032)
T ss_pred             -ccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEE---------Ee
Confidence             33444443332222222    3344444 34444332       223458999999999889999999         99


Q ss_pred             cCeEEEecceecccccccccccCCccccccccccc
Q psy14311        162 IGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSII  196 (199)
Q Consensus       162 ~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~~~~  196 (199)
                      .|++||.+|.++...||+.++..||.|..+..-.+
T Consensus       476 ~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~  510 (1032)
T KOG1178|consen  476 ADRQIKDRGVRIELGELNTVVEVHPDVKEAITLAR  510 (1032)
T ss_pred             ccceEEEccEEEehhhhchhhccCcchhhhheeee
Confidence            99999999999999999999999999987665443

>KOG3628|consensus

Probab=98.41  E-value=6.2e-07  Score=80.26  Aligned_cols=101  Identities=14%  Similarity=0.149  Sum_probs=83.5

Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC------------CCCCCeeecCceEEEc-----
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS------------IDELGWHHTGDVGMWL-----  142 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~------------~~~~g~~~TGD~~~~d-----  142 (199)
                      |...+++++.|++|++..+|..|+.||+|+.+.+-+.+|++-.+...            ....+|-+|||+|+..     
T Consensus      1156 G~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t 1235 (1363)
T KOG3628|consen 1156 GKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLT 1235 (1363)
T ss_pred             CcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecc
Confidence            55567899999999999999999999999999988888876533221            1245699999999972     


Q ss_pred             -CC----CeEEEEeeeeeeeEeeecCeEEEecceecccccccccccC-Ccccc
Q psy14311        143 -PT----LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHG-ETKRS  189 (199)
Q Consensus       143 -~~----g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~-~~~~~  189 (199)
                       .+    ..+|++         |-+++.+-++|.+-+|.+||..+.. ||.|.
T Consensus      1236 ~~~~e~~~~LyVl---------G~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~ 1279 (1363)
T KOG3628|consen 1236 DANVERHDLLYVL---------GAIDETLELNGLRHFPSDIETTVERVHPSIG 1279 (1363)
T ss_pred             cccceeeeeEEEe---------ecccceeeecCcccCcchHHHHHHHhccccc
Confidence             22    457777         9999999999999999999998875 99887

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.19  E-value=3.8e-05  Score=63.04  Aligned_cols=127  Identities=13%  Similarity=0.050  Sum_probs=79.7

Q ss_pred             cccchhHHHHHHHhhhhh---ccC-CceeEEEEecC------CCC-HHHHHHHHHHhCC----cEEeecccccCCCceee
Q psy14311          4 IYRRNSIWDKLVFKKVQE---DMG-GNLRLMLAGSA------PLA-GNVLTFLRCALGC----LVIEGYGQTECVAPITL   68 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~~~~---~~~-~slr~i~~~G~------~~~-~~~~~~~~~~~~~----~i~~~yG~tE~~~~~~~   68 (199)
                      ++..|.++-.++..-...   ..+ +..+.+..||-      .++ ++..+.+.+.||+    .+++.|||||...+...
T Consensus       196 l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~  275 (365)
T PF04443_consen  196 LFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYE  275 (365)
T ss_pred             EECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhhee
Confidence            455566555554321111   122 34556666653      354 5667778888887    59999999997764443


Q ss_pred             cccCCccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCC----
Q psy14311         69 TIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPT----  144 (199)
Q Consensus        69 ~~~~~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~----  144 (199)
                      ... .      -.+.|.. +.+.||++.++++.|++|-|-+-.+... .           ..+..-|.|+|....+    
T Consensus       276 ~~~-~------~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s-----------~p~~IlTeDlGvl~~~~~c~  335 (365)
T PF04443_consen  276 CGH-G------HFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT-S-----------YPGFILTEDLGVLHGDDDCG  335 (365)
T ss_pred             CCC-C------cccCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc-C-----------CCcEEEEcceeeecCCCCCC
Confidence            311 1      1123333 7777999999999999999977544321 1           2345779999987543    


Q ss_pred             ----CeEEEE
Q psy14311        145 ----LFFFFI  150 (199)
Q Consensus       145 ----g~l~~~  150 (199)
                          .++.++
T Consensus       336 cr~g~~f~vl  345 (365)
T PF04443_consen  336 CRKGKYFEVL  345 (365)
T ss_pred             CccCCEEEEE
Confidence                279999

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.48  E-value=0.00096  Score=57.63  Aligned_cols=135  Identities=18%  Similarity=0.092  Sum_probs=78.7

Q ss_pred             ccCCceeEEEEecCCCCHHHHHHHHHHhC-Cc-EEeecccccCCCceeecccCCccCCCCCccccC-cEEEEEeCCC---
Q psy14311         22 DMGGNLRLMLAGSAPLAGNVLTFLRCALG-CL-VIEGYGQTECVAPITLTIQGDYVPEHVGPPICC-CSVKLVDVPE---   95 (199)
Q Consensus        22 ~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~-~~~~v~d~~~---   95 (199)
                      ...++|+.+.+.+........+.+++.++ +. +...|++||+.. ......  ...  .+...++ ..+..++.++   
T Consensus       264 ~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i-~i~~~~--~~~--~~~l~~~~~ffEFip~~~~~~  338 (528)
T PF03321_consen  264 RLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFI-GIPLDP--EDP--GYVLAPDSGFFEFIPVDEDEQ  338 (528)
T ss_dssp             HHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEE-EEES-C--CC----EEE-TTSSEEEEEE-STT--
T ss_pred             HhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEE-EEecCC--CCC--ceEeecCCeEEEEEeccCCcc
Confidence            34589997776666666677788888885 34 458899999633 222211  111  1122221 1334443222   


Q ss_pred             -----Cc-----ccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC--CC--eEEEEeeeeeeeEeee
Q psy14311         96 -----MD-----YFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP--TL--FFFFIPMLVIMLMYTR  161 (199)
Q Consensus        96 -----~~-----~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~--~g--~l~~~~r~~~~~~~gR  161 (199)
                           .+     .+..|+.-||++...+   |.|.            |+.||+.++..  ++  .+.|+         ||
T Consensus       339 ~~~~~~~~l~~~ele~G~~YelviTt~~---GLyR------------Y~iGDvVrv~gf~~~~P~i~F~---------~R  394 (528)
T PF03321_consen  339 NPSEQPKTLLLHELEVGEEYELVITTNS---GLYR------------YRIGDVVRVTGFYNQTPRIEFV---------GR  394 (528)
T ss_dssp             -----SSSEEGGG--TT-EEEEEEESTT---S-SS------------EEECEEEEEEEEETTEEEEEEE---------EE
T ss_pred             cccCCCceecHHHhcCCCeEEEEEeccc---ceee------------eecCCEEEEeeccCCCcEEEEe---------cc
Confidence                 22     3567888899996432   2222            89999999843  33  78999         99


Q ss_pred             cCeEEEecceecccccccccccCC
Q psy14311        162 IGLRIRSRSRHSLGKRVEGTVHGE  185 (199)
Q Consensus       162 ~~~~i~~~g~~v~~~eiE~~l~~~  185 (199)
                      .+..+++.|++++-.+|++++.+.
T Consensus       395 ~~~~l~l~gEkl~e~~v~~av~~~  418 (528)
T PF03321_consen  395 RGQVLSLFGEKLSEEQVQEAVARA  418 (528)
T ss_dssp             TTEEE-SSS--EEHHHHHHHHHHH
T ss_pred             CCceeecceeecCHHHHHHHHHHH
Confidence            999999999999999999998864

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=96.79  E-value=0.026  Score=49.36  Aligned_cols=138  Identities=15%  Similarity=0.082  Sum_probs=86.1

Q ss_pred             hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEE-eecccccCCCceeecccCCccCCCCCcc-ccC---cEEEEEeCC
Q psy14311         21 EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPP-ICC---CSVKLVDVP   94 (199)
Q Consensus        21 ~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~G~p-~~~---~~~~v~d~~   94 (199)
                      ..+.++++.|.+--..........++..+ |+++. ..|++||+.. ..+-.+ ..++..+..+ +|+   .++.-++.+
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~-ginl~P-~~~p~~~sy~L~p~~~yFEFip~~~~  377 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYF-GVNLNP-LCKPSEVSYTLIPTMAYFEFLPVHRN  377 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEE-EeccCC-CCCcccceeeecCCcEEEEEeeccCc
Confidence            44558899887766666666667776655 56644 7799999643 222111 1122222222 222   333333321


Q ss_pred             CC-----------------c-----ccCCCCcceEEEec-CcccccccCCCcCCCCCCCCeeecCceEEE----cCCCeE
Q psy14311         95 EM-----------------D-----YFAHEGKGEVCVRG-NNVFLGYFKDPELNSIDELGWHHTGDVGMW----LPTLFF  147 (199)
Q Consensus        95 ~~-----------------~-----~~~~g~~Gel~i~~-~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~----d~~g~l  147 (199)
                      ++                 +     .+..|+.-||++.. .++.    .            |+.||+.+.    +..-.|
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~GLy----R------------YrlGDvv~V~Gf~n~~P~~  441 (612)
T PLN02620        378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYAGLY----R------------YRVGDVLRVAGFKNKAPQF  441 (612)
T ss_pred             ccccccccccccccccccCccccHHHccCCCeEEEEEEecCceE----E------------EecCCEEEEeeecCCCceE
Confidence            11                 1     14567788888853 2222    1            789999887    445789


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceecccccccccccCC
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGE  185 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~  185 (199)
                      .|+         +|.+.+..+.|+++.-.++-.++.+.
T Consensus       442 ~Fv---------~R~~~~lsi~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        442 SFI---------CRKNVVLSIDSDKTDEVELQNAVKNA  470 (612)
T ss_pred             EEE---------eecCceeecccccCCHHHHHHHHHHH
Confidence            999         99999999999999998887777653

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=96.68  E-value=0.031  Score=48.93  Aligned_cols=138  Identities=13%  Similarity=0.109  Sum_probs=85.9

Q ss_pred             hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEE-eecccccCCCceeecccCCccCCCCCcc-ccC---cEEEEEeCC
Q psy14311         21 EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPP-ICC---CSVKLVDVP   94 (199)
Q Consensus        21 ~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~G~p-~~~---~~~~v~d~~   94 (199)
                      ..+.++++.|.+--..........++..+ |+++. ..|++||+..  ..+-....++..+..+ +|+   .++.-++..
T Consensus       289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~--ginl~p~~~p~~~sy~L~p~~~yFEFip~~~~  366 (606)
T PLN02247        289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYF--GINLKPLSDPSDVSYTLLPNMAYFEFLPVDKN  366 (606)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEE--EeccCcCCCccCCceeecCCcEEEEEeecCCC
Confidence            34558899888766666677777777655 56655 6899999643  2221111122222222 222   333322311


Q ss_pred             CCc---------------------------ccCCCCcceEEEec-CcccccccCCCcCCCCCCCCeeecCceEEE----c
Q psy14311         95 EMD---------------------------YFAHEGKGEVCVRG-NNVFLGYFKDPELNSIDELGWHHTGDVGMW----L  142 (199)
Q Consensus        95 ~~~---------------------------~~~~g~~Gel~i~~-~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~----d  142 (199)
                      +.+                           .+..|+.-||+++. .++.    .            |+.||+.+.    +
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~~GLY----R------------YrlGDvv~V~GF~n  430 (606)
T PLN02247        367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFTGLY----R------------YRVGDILMVTGFYN  430 (606)
T ss_pred             cccccccccccccccccccccccCceecHHHccCCCeEEEEEEecCceE----E------------EecCCEEEEeeecC
Confidence            101                           24567778888853 2222    1            789999887    4


Q ss_pred             CCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCC
Q psy14311        143 PTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGE  185 (199)
Q Consensus       143 ~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~  185 (199)
                      ..-.|.|+         +|.+.+..+.|+++.-.++-.++.+.
T Consensus       431 ~~P~~~Fv---------~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        431 NAPQFRFV---------QRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             CCceEEEE---------ecCCceeecccccCCHHHHHHHHHHH
Confidence            55789999         99999999999999998887777653

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=96.26  E-value=0.04  Score=48.31  Aligned_cols=134  Identities=14%  Similarity=0.121  Sum_probs=81.3

Q ss_pred             ccCCc---eeEEEEecCCCCHHHHHHHHHHhC-Cc-EEeecccccCCCceeecccCCccCCCCCcc--ccCcEEEEEeC-
Q psy14311         22 DMGGN---LRLMLAGSAPLAGNVLTFLRCALG-CL-VIEGYGQTECVAPITLTIQGDYVPEHVGPP--ICCCSVKLVDV-   93 (199)
Q Consensus        22 ~~~~s---lr~i~~~G~~~~~~~~~~~~~~~~-~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p--~~~~~~~v~d~-   93 (199)
                      ...++   +.+++.||..   .....++..++ .. +...|++||+.. .... .....+..++..  ..+..+..++. 
T Consensus       299 ~lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~-gi~~-~~~~~p~~~~~~l~~~~~ffEFiP~~  373 (597)
T PLN02249        299 KIWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYF-GINL-NPMCKPSEVSYTIMPNMAYFEFLPHN  373 (597)
T ss_pred             HhCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEE-Eeec-CCCCCCCCcceEecCCcEEEEeeecc
Confidence            34477   5555655533   55567776663 43 568999999533 2222 111111112221  22444444431 


Q ss_pred             CCC-------c-----ccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC----CCeEEEEeeeeeee
Q psy14311         94 PEM-------D-----YFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP----TLFFFFIPMLVIML  157 (199)
Q Consensus        94 ~~~-------~-----~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~----~g~l~~~~r~~~~~  157 (199)
                      +.+       +     .|..|+.-+|+|...   .|.|.            |+.||..++..    --.|.|+       
T Consensus       374 ~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~---~GLyR------------Y~iGDvVrvtgf~~~~P~i~F~-------  431 (597)
T PLN02249        374 HDGDGALDETSLVELADVEVGKEYELVITTY---AGLYR------------YRVGDILRVTGFHNSAPQFKFI-------  431 (597)
T ss_pred             cCCcccCCCCcEecHHHcCCCCeEEEEEEcc---cceeE------------eecCCEEEEeeccCCCcEEEEE-------
Confidence            111       1     245677788888532   12222            78999999843    3567888       


Q ss_pred             EeeecCeEEEecceecccccccccccC
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHG  184 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~  184 (199)
                        ||.+..++.-|+++.-.+++.+|..
T Consensus       432 --gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        432 --RRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             --ccCCcceecccccCCHHHHHHHHHH
Confidence              9999999999999999999998876

>KOG3628|consensus

Probab=95.80  E-value=0.013  Score=53.71  Aligned_cols=72  Identities=13%  Similarity=0.142  Sum_probs=53.6

Q ss_pred             CCccccC-cEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-------C-------CCCCeeecCceEEEcC
Q psy14311         79 VGPPICC-CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-------I-------DELGWHHTGDVGMWLP  143 (199)
Q Consensus        79 ~G~p~~~-~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-------~-------~~~g~~~TGD~~~~d~  143 (199)
                      +|...|+ ..+.++++++.+.|..++.||||+.++++...||.-+..+.       .       ....|.+||=+|+..+
T Consensus       504 ~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~  583 (1363)
T KOG3628|consen  504 VLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHN  583 (1363)
T ss_pred             cceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeC
Confidence            4444443 56667888899999999999999999999999997665543       0       1123789999999975


Q ss_pred             CCeEEEE
Q psy14311        144 TLFFFFI  150 (199)
Q Consensus       144 ~g~l~~~  150 (199)
                      ++-+++.
T Consensus       584 gki~vl~  590 (1363)
T KOG3628|consen  584 GKIYVLG  590 (1363)
T ss_pred             CeEEEEE
Confidence            5555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-13
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-13
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-13
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-12
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		6e-12
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-10
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		7e-10
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		8e-10
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		8e-10
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-08
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-07
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-06
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		9e-05
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-04

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
           NL  + +G APL+  V   +        V +GYG TE  + I +T +GD  P   G  + 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVP 369
Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
               K++D+          +GEVCV+G  +  GY  +PE     IDE GW HTGD+G + 
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
Query: 143 PTLFFFFIPMLVIMLMY 159
               FF +  L  ++ Y
Sbjct: 430 EEKHFFIVDRLKSLIKY 446

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
           NL  + +G APL+  V   +        I +GYG TE  + I +T +GD  P  VG  + 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 372
Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
               K+VD+          +GE+CVRG  +  GY  +PE  +  ID+ GW H+GD+  W 
Sbjct: 373 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 432
Query: 143 PTLFFFFIPMLVIMLMY 159
               FF +  L  ++ Y
Sbjct: 433 EDEHFFIVDRLKSLIKY 449

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
           NL  + +G APL+  V   +        V +GYG TE  + I +T +GD  P   G  + 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVP 369
Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
               K++D+          +GEVCV+G  +  GY  +PE     IDE GW HTGD+G + 
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
Query: 143 PTLFFFFIPMLVIMLMY 159
               FF +  L  ++ Y
Sbjct: 430 EEKHFFIVDRLKSLIKY 446

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
           NL  + +G APL+  V   +        V +GYG TE  + I +T +GD  P   G  + 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVP 369
Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
               K++D+          +GEVCV+G  +  GY  +PE     IDE GW HTGD+G + 
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
Query: 143 PTLFFFFIPMLVIMLMY 159
               FF +  L  ++ Y
Sbjct: 430 EEKHFFIVDRLKSLIKY 446

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
           NL  + +G APL+  V   +        I +GYG TE  + I +T +GD  P  VG  + 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 367
Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
               K+VD+          +GE+CVRG  +  GY  +PE  +  ID+ GW H+GD+  W 
Sbjct: 368 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427
Query: 143 PTLFFFFIPMLVIMLMY 159
               FF +  L  ++ Y
Sbjct: 428 EDEHFFIVDRLKSLIKY 444

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
           NL  + +G APL+  V   +        I +GYG TE  + I +T +GD  P  VG  + 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 367
Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
               K+VD+          +GE+CVRG  +  GY  +PE  +  ID+ GW H+GD+  W 
Sbjct: 368 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427
Query: 143 PTLFFFFIPMLVIMLMY 159
               FF +  L  ++ Y
Sbjct: 428 EDEHFFIVDRLKSLIKY 444

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPIC 84
           NL  + +G APL+  V   +        I +GYG TE  + I +T +GD  P  VG  + 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVP 372
Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWL 142
               K+VD+          +GE+ VRG  +  GY  +PE  +  ID+ GW H+GD+  W 
Sbjct: 373 FFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 432
Query: 143 PTLFFFFIPMLVIMLMY 159
               FF +  L  ++ Y
Sbjct: 433 EDEHFFIVDRLKSLIKY 449

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQG-DYVPEHVGPPI 83
           NL  + +G APLA  V   +        I +GYG TE  + I +T +G D  P   G  +
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVV 401
Query: 84  CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMW 141
              S K+VD+          +GE+CV+G  +  GY  +PE  S  ID+ GW H+GD+  +
Sbjct: 402 PFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYY 461
Query: 142 LPTLFFFFIPMLVIMLMY 159
               +FF +  L  ++ Y
Sbjct: 462 DKDGYFFIVDRLKSLIKY 479

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 18  KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77
           ++ ++  G+ RL ++GSAPL  +         G  V+E YG TE     +    GD VP 
Sbjct: 261 RLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPG 320
Query: 78  HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
            VGP +   S ++ D PE       G  G + V+G NVF GY++ PE    +  + G+  
Sbjct: 321 AVGPALPGVSARVTD-PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFI 379
Query: 135 TGDVG 139
           TGD+G
Sbjct: 380 TGDLG 384

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 18  KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77
           ++  +  G++RL ++GSAPL  +         G  V+E YG TE     +    GD VP 
Sbjct: 261 RLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPG 320
Query: 78  HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
            VGP +   S ++ D PE       G  G + V G NVF GY++ PE    +  + G+  
Sbjct: 321 AVGPALPGVSARVTD-PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 135 TGDVG 139
           TGD+G
Sbjct: 380 TGDLG 384

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 18  KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77
           ++  +  G++RL ++GSAPL  +         G  V+E YG TE     +    GD VP 
Sbjct: 261 RLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPG 320
Query: 78  HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
            VGP +   S ++ D PE       G  G + V G NVF GY++ PE    +  + G+  
Sbjct: 321 AVGPALPGVSARVTD-PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 135 TGDVG 139
           TGD+G
Sbjct: 380 TGDLG 384

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 18  KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE 77
           ++  +  G++RL ++GSAPL  +         G  V+E YG TE     +    GD VP 
Sbjct: 261 RLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPG 320
Query: 78  HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNSID--ELGWHH 134
            VGP +   S ++ D PE       G  G + V G NVF GY++ PE    +  + G+  
Sbjct: 321 AVGPALPGVSARVTD-PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 135 TGDVG 139
           TGD+G
Sbjct: 380 TGDLG 384

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 25  GNLRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPI 83
            +LR++ +G APL   +   +R       + +GYG TE    + + +     P  + P  
Sbjct: 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGA 356
Query: 84  CCCSV-----KLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTG 136
           C   V     K+VD            GE+C+RG+ +  GY  DPE  S  ID+ GW HTG
Sbjct: 357 CGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG 416
Query: 137 DVGMWLPTLFFFFIPMLVIMLMY 159
           D+G        F +  L  ++ Y
Sbjct: 417 DIGYIDDDDELFIVDRLKELIKY 439

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 28  RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCS 87
           RL+++GSA L  +    +  A G  VIE YG TE +   ++   G+     VG P+    
Sbjct: 275 RLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334
Query: 88  VKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMWLP 143
           ++LV+       A +G+  GE+ VRG N+F  Y   P+    +  E G+  TGD+ +  P
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394
Query: 144 TLFFFFI 150
             +   +
Sbjct: 395 DGYVRIV 401

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 25  GNLRLMLAGSAPLAGNV-----LTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV 79
            ++R++ +G+APL   +       F    LG    +GYG TE    + +++     P  V
Sbjct: 344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLG----QGYGMTEAGPVLAMSLGFAKEPFPV 399
Query: 80  GPPICCCSV-----KLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGW 132
               C   V     K+VD    D  +    GE+C+RG+ +  GY  +P     +ID+ GW
Sbjct: 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGW 459
Query: 133 HHTGDVGMWLPTLFFFFIPMLVIMLMY 159
            HTGD+G+       F +  L  ++ Y
Sbjct: 460 LHTGDIGLIDDDDELFIVDRLKELIKY 486

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 57  YGQTECVAPITLTIQGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFL 116
           +GQ+E     T     D  P+  G P+   +V +VD  +      E  GE+ +RG  VF 
Sbjct: 302 FGQSETSGLSTFAPYRDR-PKSAGRPLFWRTVAVVDAEDRPLPPGE-VGEIVLRGPTVFK 359
Query: 117 GYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFF 149
           GY+ +          GWHHTGD+G +    + F+
Sbjct: 360 GYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFY 393

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 26  NLRLMLAGSAPLAGNVLTFLRCAL--GCLVIEGYGQTE-CVAPITLTIQGDYV-PEHVGP 81
           NL+ +L G A L+    T +  AL     +   +G TE C   +T T +  +  P+ VG 
Sbjct: 275 NLQKILLGGAKLSA---TMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGM 331
Query: 82  PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVG 139
           P     VK+ +  +      EG GE+ ++G NV  GY    +L    E G+ +TGD+ 
Sbjct: 332 PSANVDVKIKNPNK------EGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIA 383

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-26
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-24
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-24
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	5e-24
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-22
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	8e-22
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-21
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-21
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	4e-21
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-20
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-20
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	5e-20
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	6e-20
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-18
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-16
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-15
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-10
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	9e-08
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-07
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	5e-07
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	3e-06
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-05
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	2e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	4e-04
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	7e-04

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  105 bits (263), Expect = 1e-26
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
             RL+++GSA L  +    +  A G  VIE YG TE +   ++   G+     VG P+  
Sbjct: 273 GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPG 332

Query: 86  CSVKLVD-----VPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDV 138
             ++LV+     +  +D    E  GE+ VRG N+F  Y   P+    +  E G+  TGD+
Sbjct: 333 VELRLVEEDGTPIAALD---GESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDM 389

Query: 139 G 139
            
Sbjct: 390 A 390

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
           ++RL ++GSAPL  +         G  V+E YG TE     +    GD VP  VGP +  
Sbjct: 269 HMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPG 328

Query: 86  CSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
            S ++ D PE       G  G + V+G NVF GY++ PE       + G+  TGD+G
Sbjct: 329 VSARVTD-PETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLG 384

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 98.0 bits (245), Expect = 3e-24
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPP 82
           NL+ +L G A L+  ++          +   +G TE      LT   + +      VG P
Sbjct: 275 NLQKILLGGAKLSATMIETAL-QYNLPIYNSFGMTET-CSQFLTATPEMLHARPDTVGMP 332

Query: 83  ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVG 139
                VK+ +  +      EG GE+ ++G NV  GY    +L    E G+ +TGD+ 
Sbjct: 333 SANVDVKIKNPNK------EGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIA 383

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 97.2 bits (243), Expect = 5e-24
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPPI 83
            R  + G AP+   ++     A    V++GY  TE        +  +         G   
Sbjct: 286 FRYFITGGAPMPEALIKIYA-AKNIEVVQGYALTES-CGGGTLLLSEDALRKAGSAGRAT 343

Query: 84  CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMW 141
               V +    +     H G+GEV ++ + +   Y+  PE    + D  GW  TGD+G  
Sbjct: 344 MFTDVAVRG-DDGVIREH-GEGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEI 400

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 93.4 bits (233), Expect = 1e-22
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           LR +     P    +  F            +GQ+E  + ++        P+  G P+   
Sbjct: 274 LRAVTGLDTPET--IERFEATCPNATFWATFGQSET-SGLSTFAPYRDRPKSAGRPLFWR 330

Query: 87  SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMW 141
           +V +VD  E         GE+ +RG  VF GY+ +      +    GWHHTGD+G +
Sbjct: 331 TVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDMGRF 385

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 91.2 bits (227), Expect = 8e-22
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 9/119 (7%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEHVGPPI 83
           L+L+  G A L+  +   +   +GC + + +G  E +  +  T   D    +    G P+
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGL--VNYTRLDDSAEKIIHTQGYPM 361

Query: 84  C-CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
           C    V + D  E +       G +  RG   F GY+K P+ N  + D  G++ +GD+ 
Sbjct: 362 CPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLI 419

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 90.7 bits (226), Expect = 1e-21
 Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
           L  + +G APL+  V   +        V +GYG TE  + I +T +GD  P   G  +  
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPL 370

Query: 86  CSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVG 139
              K++D  +        + GEVCV+G  +  GY  +PE     IDE GW HTGD+G
Sbjct: 371 FKAKVID-LDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIG 426

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 90.0 bits (224), Expect = 2e-21
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
           L  + +G APL+  V   +        I +GYG TE  + I +T +GD  P  VG  +  
Sbjct: 309 LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPF 368

Query: 86  CSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
              K+VD  +        + GE+CVRG  +  GY  +PE     ID+ GW H+GD+ 
Sbjct: 369 FEAKVVD-LDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 89.2 bits (222), Expect = 4e-21
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTE-----CVAPITLTIQGDYVPEHVG 80
           LR++ +G APL   +   +R       + +GYG TE      +         D  P   G
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACG 358

Query: 81  PPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGD 137
             +    +K+VD PE        + GE+C+RG+ +  GY  DPE  S  ID+ GW HTGD
Sbjct: 359 TVVRNAEMKIVD-PETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417

Query: 138 VG 139
           +G
Sbjct: 418 IG 419

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 87.6 bits (218), Expect = 1e-20
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEHVGPPI 83
           L+++  G A  +      ++   GC + + +G  E +  +  T   D    +    G P+
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL--VNYTRLDDPEEIIVNTQGKPM 357

Query: 84  C-CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
                 ++ D            G +  RG     GY+K  E N  S  E G++ TGD+ 
Sbjct: 358 SPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 87.6 bits (218), Expect = 1e-20
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY---VPEHVGPPI 83
           L+L+  G A    ++   +   L C + + +G  E +  +  T   D    +    G PI
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL--VNYTRLDDSDEQIFTTQGRPI 366

Query: 84  CC-CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
                +K+VD  +         G +  RG   F GY++ PE N    DE  ++++GD+ 
Sbjct: 367 SSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLV 424

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 86.1 bits (214), Expect = 5e-20
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           LR +    A +   VL  +   L    +  YG TE         Q          P    
Sbjct: 274 LRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA-MNSLYMRQPK--TGTEMAPGFFS 330

Query: 87  SVKLVDV--PEMDYFAHEGKGEVCVRG-NNVFLGYFKDPELN--SIDELGWHHTGDVG 139
            V++V +     +  A+  +GE+ V   ++ F+GY   P+     + + GW+ T DV 
Sbjct: 331 EVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVA 387

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 86.2 bits (214), Expect = 6e-20
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 10/122 (8%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTE--CVAPITLTIQGDYVPEH---VG 80
           +R++ +G+APL   +   +        + +GYG TE   V  ++L    +  P      G
Sbjct: 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACG 405

Query: 81  PPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGD 137
             +    +K+VD P+        + GE+C+RG+ +  GY  +P   +  ID+ GW HTGD
Sbjct: 406 TVVRNAEMKIVD-PDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGD 464

Query: 138 VG 139
           +G
Sbjct: 465 IG 466

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALG-------CLVIEGYGQTECVAPITLT--IQGDYVPE 77
           L++   G+ P+A  ++  L                + +G TE   P+  T          
Sbjct: 298 LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA-CPMVTTNPPLRLDKST 356

Query: 78  HVGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPE------LNSIDEL 130
             G P+    +K++   E       G+ GE+ +RG N+F GY+K  +             
Sbjct: 357 TQGVPMSDIELKVIS-LEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGR 415

Query: 131 GWHHTGDVG 139
            +  TGDVG
Sbjct: 416 KFFRTGDVG 424

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 27  LRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCC 86
           +R+  +    L   +        GC +++G G TE +        G       G P+   
Sbjct: 302 IRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGY 361

Query: 87  SVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVG 139
            ++L D            G++ ++G +  + Y+ + E +  +     W  +GD  
Sbjct: 362 EIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLG-EWIRSGDKY 414

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 71.8 bits (177), Expect = 4e-15
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 26/154 (16%)

Query: 10  IWDKLV--FKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPIT 67
           +W  L    +     +    RL++ GSA     +  F R  +G  V +GYG TE    + 
Sbjct: 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVV 334

Query: 68  LTIQGDYVPEHV--------------GPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRG 111
                                     G PI    +++ D  E      +GK  GEV ++G
Sbjct: 335 Q---NFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKG 390

Query: 112 NNVFLGYFKDPELN--SIDELGWHHTGDVGMWLP 143
             +  GY+ + E    ++   G+  TGD+ +W  
Sbjct: 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 28  RLMLAGSA--PLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICC 85
            L    +    L    L   R   G  + E YGQTE      ++      P ++G    C
Sbjct: 323 HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASC 382

Query: 86  CSVKLVDVPEMDYFAHEGKGEVCVRGN-----NVFLGYFKDPELNSIDELG-WHHTGDVG 139
             V+++D  + +      +G++ +R        +F GY  +P+  + +  G +   GD G
Sbjct: 383 YDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441

Query: 140 MW 141
           + 
Sbjct: 442 IK 443

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 29/141 (20%)

Query: 19  VQEDMG----GNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY 74
           ++ED+       L+  +    PL   V        G  ++EG+GQTE V  I      + 
Sbjct: 331 IKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEP 390

Query: 75  VPEHVGPPICCCSVKLVDVPEMDYFAHEGK-------GEVCVRGNN-----VFLGYFKDP 122
            P  +G P     ++L+D         +G+       GE+ +         +F+ Y KDP
Sbjct: 391 KPGSIGKPTPGYKIELMD--------RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDP 442

Query: 123 ELNS---IDELGWHHTGDVGM 140
           E       D  G++HTGD+  
Sbjct: 443 ERTEETWHD--GYYHTGDMAW 461

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 9/55 (16%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 145 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKSIIRML 199
           +  +F+P+LVI   YT +G+ + +            +     ++  +++ +++M+
Sbjct: 202 VLIYFLPLLVIGYAYTVVGITLWASEIPG------DSSDRYHEQVSAKRKVVKMM 250

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 14/72 (19%)

Query: 79  VGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN----------SI 127
            G PI    VK++D P+        + GE+ V+ N+V  GY+  PE              
Sbjct: 376 SGNPIQ--EVKIID-PDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDE 432

Query: 128 DELGWHHTGDVG 139
               +  TGD+G
Sbjct: 433 RSAIYLRTGDLG 444

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 16/75 (21%)

Query: 79  VGPPICCCSVKLVDVPEMDYFAHEGK-GEVCVRGNNVFLGYFKDPELN------------ 125
              P     V++VD  +      +G  GE+ V G+NV  GY++ P+ +            
Sbjct: 396 YMLPRSP-IVRIVD-SDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPS 453

Query: 126 -SIDELGWHHTGDVG 139
               E  W  TGD G
Sbjct: 454 PGTPEGPWLRTGDSG 468

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 130 LGWHHTGDVG---------MWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEG 180
            G++ TGD           +   ++  F++P  V +L+Y RI + ++ R R ++ + +  
Sbjct: 179 FGFNTTGDPTVCSISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRI 238

Query: 181 TVHGETKRSQSRKSIIRM 198
                 K  +  +    +
Sbjct: 239 DEGLRLKIYKDTEGYYTI 256

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 11/35 (31%)

Query: 7  RNSIWDKLVFKKVQEDMGGNLRLMLAGSAP-LAGN 40
          + ++      KK+Q     +L+L    SAP LA  
Sbjct: 19 KQAL------KKLQ----ASLKLYADDSAPALAIK 43

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 17/86 (19%)

Query: 130 LGWHHTGDVGMWLP-----------------TLFFFFIPMLVIMLMYTRIGLRIRSRSRH 172
           L W     V                       +  F++P++++ ++Y  I    +SR   
Sbjct: 160 LFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINI 219

Query: 173 SLGKRVEGTVHGETKRSQSRKSIIRM 198
               R++  +  +  +       I +
Sbjct: 220 FEMLRIDEGLRLKIYKDTEGYYTIGI 245

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 144 TLFFFFIPMLVIMLMYTRIGLRIRSRSRH-SLGKRVEGTVHGETKRSQSRKSI 195
                 +P+L+++ +Y RI L  R +     + +  EG      K ++   +I
Sbjct: 197 FFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTI 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.97
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.96
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.96
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.96
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.95
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.79
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.61
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.59
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.36
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.13
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.04

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.2e-39  Score=279.83  Aligned_cols=182  Identities=21%  Similarity=0.267  Sum_probs=163.2

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      +.++++|++++.|+........+++||.+++||+++++++.++|.+.+++++++.||+||++..++........++++|+
T Consensus       318 t~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~  397 (580)
T 3etc_A          318 TTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGK  397 (580)
T ss_dssp             CEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBE
T ss_pred             eEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCcccc
Confidence            45678999999998765555667899999999999999999999999999999999999998877766555567789999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEec-----CcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRG-----NNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~-----~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      |+++++++|+| ++++++++|+.|||++++     ++++.||+++|+.+. .+.+|||+|||+|++|+||+|+|+     
T Consensus       398 p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~-----  471 (580)
T 3etc_A          398 PTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFV-----  471 (580)
T ss_dssp             ECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE-----
T ss_pred             CCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEE-----
Confidence            99999999999 779999999999999996     789999999999988 556899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                          ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus       472 ----GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~V  505 (580)
T 3etc_A          472 ----GRADDIIKTSGYKVGPFEVESALIQHPAVLECAI  505 (580)
T ss_dssp             ----EESSSCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred             ----ecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEE
Confidence                9999999999999999999999999999987643

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.6e-39  Score=274.73  Aligned_cols=183  Identities=24%  Similarity=0.355  Sum_probs=163.9

Q ss_pred             CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG   80 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G   80 (199)
                      +.++++|+++..|+.... .....+++|.+++||+++++++.+.|.+.+++.+++.||+||++..++........++++|
T Consensus       244 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G  323 (503)
T 4fuq_A          244 TVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG  323 (503)
T ss_dssp             CEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEE
T ss_pred             CEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccc
Confidence            346789999999986643 3344578999999999999999999999999999999999999876554444445678899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +|+++++++|+|++++++++.|+.|||+++||+++.|||++|+.+.  +..+|||+|||++++|++|+++++        
T Consensus       324 ~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~--------  395 (503)
T 4fuq_A          324 PALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHIL--------  395 (503)
T ss_dssp             EBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEEC--------
T ss_pred             cCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEE--------
Confidence            9999999999998999999999999999999999999999999887  667899999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                       ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       396 -GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v  429 (503)
T 4fuq_A          396 -GRGKDLVITGGFNVYPKEIESEIDAMPGVVESAV  429 (503)
T ss_dssp             -CSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred             -ecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence             9999999999999999999999999999987654

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=6.9e-39  Score=272.60  Aligned_cols=183  Identities=23%  Similarity=0.375  Sum_probs=163.5

Q ss_pred             CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecc-----cCCc
Q psy14311          2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTI-----QGDY   74 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~-----~~~~   74 (199)
                      +.++++|+++..|+.... ....+++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++...     ....
T Consensus       273 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~  352 (536)
T 3ni2_A          273 SIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDI  352 (536)
T ss_dssp             CEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCC
T ss_pred             eEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccC
Confidence            346789999999986643 344568999999999999999999999998 899999999999998665442     1223


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEee
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPM  152 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r  152 (199)
                      .++++|+|+++++++|+|++++++++.|+.|||+++|++++.|||++|+.+.  +..+|||+|||++++|+||+++++  
T Consensus       353 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~--  430 (536)
T 3ni2_A          353 KPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIV--  430 (536)
T ss_dssp             CTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE--
T ss_pred             CCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEE--
Confidence            5688999999999999998899999999999999999999999999999887  668999999999999999999999  


Q ss_pred             eeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        153 LVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       153 ~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                             ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       431 -------GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~V  464 (536)
T 3ni2_A          431 -------DRLKELIKYKGFQVAPAELEALLIAHPEISDAAV  464 (536)
T ss_dssp             -------EECSCCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred             -------ecccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence                   9999999999999999999999999999987654

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=3.8e-39  Score=274.95  Aligned_cols=183  Identities=25%  Similarity=0.408  Sum_probs=134.3

Q ss_pred             CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCc-EEeecccccCCCceeecccCCccCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCL-VIEGYGQTECVAPITLTIQGDYVPEHV   79 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~   79 (199)
                      +.++++|+++..|+..... ...+++||.+++||+++++++.+++.+.++.. +++.||+||++..++.........+++
T Consensus       283 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v  362 (550)
T 3rix_A          283 QSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV  362 (550)
T ss_dssp             SEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred             eEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence            3567899999999876543 34568999999999999999999999999875 999999999998877766656677899


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      |+|+++++++|+|++++++++.|+.|||+++||+++.|||++|+.+.  +..+|||+|||++++|++|+++++       
T Consensus       363 G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~-------  435 (550)
T 3rix_A          363 GKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV-------  435 (550)
T ss_dssp             EEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------
T ss_pred             ccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEE-------
Confidence            99999999999998899999999999999999999999999999887  668999999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                        ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       436 --GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v  469 (550)
T 3rix_A          436 --DRLKSLIKYKGYQVAPAELESILLQHPNIFDAGV  469 (550)
T ss_dssp             ------------------------------------
T ss_pred             --ecchheeEECCEEECHHHHHHHHHhCCCcceEEE
Confidence              9999999999999999999999999999987654

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.8e-38  Score=270.74  Aligned_cols=182  Identities=26%  Similarity=0.393  Sum_probs=163.1

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G   80 (199)
                      .++++|+++..|+..... ...+++||.+++||+++++++.+++.+.| ++.+++.||+||++..++.........+++|
T Consensus       286 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G  365 (548)
T 2d1s_A          286 SVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASG  365 (548)
T ss_dssp             EEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCB
T ss_pred             EEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCC
Confidence            467899999999865432 34568899999999999999999999999 6889999999999987766544445678999


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      +|+++++++|+|+++++++++|+.|||+++||+++.|||++|+.+.  +..+|||+|||++++|++|++++.        
T Consensus       366 ~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~--------  437 (548)
T 2d1s_A          366 KVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIV--------  437 (548)
T ss_dssp             EECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEE--------
T ss_pred             ccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEe--------
Confidence            9999999999998899999999999999999999999999999887  557899999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                       ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       438 -GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V  471 (548)
T 2d1s_A          438 -DRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV  471 (548)
T ss_dssp             -EEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEE
T ss_pred             -ccccceEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence             9999999999999999999999999999986544

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2.6e-38  Score=271.03  Aligned_cols=182  Identities=19%  Similarity=0.244  Sum_probs=162.5

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      +.++++|++++.|+........+++||.++++|+++++++.++|.+.+++.+++.||+||++..++........++++|+
T Consensus       299 t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~  378 (570)
T 3c5e_A          299 KSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGT  378 (570)
T ss_dssp             CEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCE
T ss_pred             eEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccc
Confidence            45678999999998765444556889999999999999999999998999999999999998766554443456789999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEe-----cCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVR-----GNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVI  155 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~-----~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~  155 (199)
                      |+++++++|+| +++++++.|+.|||+++     |++++.||+++|+.+. .+.++||+|||++++|++|+++|+     
T Consensus       379 p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~-----  452 (570)
T 3c5e_A          379 AASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFM-----  452 (570)
T ss_dssp             ECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEE-----
T ss_pred             cCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEE-----
Confidence            99999999999 77999999999999999     9999999999999887 445899999999999999999999     


Q ss_pred             eeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                          ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       453 ----GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~V  486 (570)
T 3c5e_A          453 ----GRADDIINSSGYRIGPSEVENALMEHPAVVETAV  486 (570)
T ss_dssp             ----EEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred             ----ecCCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence                9999999999999999999999999999987654

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2e-37  Score=264.26  Aligned_cols=183  Identities=20%  Similarity=0.218  Sum_probs=150.1

Q ss_pred             CccccchhHHHHHHHhhhhh---ccCCceeEEEEecCCCCHHHHHHHHHH----hC---CcEEeecccccCCCceeeccc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQE---DMGGNLRLMLAGSAPLAGNVLTFLRCA----LG---CLVIEGYGQTECVAPITLTIQ   71 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~---~~~~slr~i~~~G~~~~~~~~~~~~~~----~~---~~i~~~yG~tE~~~~~~~~~~   71 (199)
                      +.++++|+++..|+......   ..++++|.+++||+++++++.+++.+.    ++   +.+++.||+||++.+++....
T Consensus       270 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  349 (549)
T 3g7s_A          270 TFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP  349 (549)
T ss_dssp             CEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG
T ss_pred             eEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc
Confidence            34678999999998664433   345889999999999999999999988    56   889999999999987776544


Q ss_pred             CC-ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C--CCCC--eeecCceEEEcCC
Q psy14311         72 GD-YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I--DELG--WHHTGDVGMWLPT  144 (199)
Q Consensus        72 ~~-~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~--~~~g--~~~TGD~~~~d~~  144 (199)
                      .. ....++|+|+++++++|+|++++++++.|+.|||+++||+++.|||++|+.+.  +  +.+|  ||+|||++++|++
T Consensus       350 ~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~d  429 (549)
T 3g7s_A          350 LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEE  429 (549)
T ss_dssp             GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTT
T ss_pred             cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCC
Confidence            32 46688999999999999998999999999999999999999999999999887  2  2677  9999999999999


Q ss_pred             CeEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        145 LFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       145 g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+++|+         ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus       430 G~l~~~---------GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~V  469 (549)
T 3g7s_A          430 GFLHFQ---------DRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAV  469 (549)
T ss_dssp             SCEEEE---------EEC------------CHHHHHHHTTSTTEEEEEE
T ss_pred             ceEEEe---------ccccceEEECCEEECHHHHHHHHHhCCCeeeEEE
Confidence            999999         9999999999999999999999999999987654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=5.5e-38  Score=265.41  Aligned_cols=182  Identities=23%  Similarity=0.335  Sum_probs=156.5

Q ss_pred             CccccchhHHHHHHHh----hhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCC
Q psy14311          2 KGIYRRNSIWDKLVFK----KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPE   77 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~----~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~   77 (199)
                      +.++++|+++..|+..    +.....++++|.+++||+++++++.+++.+.+++++++.||+||++..++.........+
T Consensus       245 t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~  324 (505)
T 3nyq_A          245 TMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAG  324 (505)
T ss_dssp             CEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTT
T ss_pred             eEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCC
Confidence            3567899999998863    222334577999999999999999999999999999999999999876666555555678


Q ss_pred             CCCccccCcEEEEEeCCCCcccCC---CCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEee
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAH---EGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPM  152 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~---g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r  152 (199)
                      ++|+|+++++++|+| +++++++.   |+.|||+++|++++.|||++|+.+.  +..++||+|||++++|++|++++.  
T Consensus       325 ~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~--  401 (505)
T 3nyq_A          325 TVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV--  401 (505)
T ss_dssp             CCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE--
T ss_pred             CcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe--
Confidence            999999999999999 77888876   8999999999999999999999887  667999999999999999999999  


Q ss_pred             eeeeeEeeec-CeEEEecceecccccccccccCCcccccccc
Q psy14311        153 LVIMLMYTRI-GLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       153 ~~~~~~~gR~-~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                             ||. |++||.+|++|+|.|||++|.+||.|.++..
T Consensus       402 -------GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~V  436 (505)
T 3nyq_A          402 -------GRKATDLIKSGGYKIGAGEIENALLEHPEVREAAV  436 (505)
T ss_dssp             -------EESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred             -------CCccCceEEeCCEEECHHHHHHHHHHCcCccEEEE
Confidence                   997 5899999999999999999999999987654

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=4.7e-37  Score=261.62  Aligned_cols=181  Identities=19%  Similarity=0.272  Sum_probs=148.2

Q ss_pred             CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC-------
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD-------   73 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-------   73 (199)
                      +.++++|+++..|+..... ...+++||.+++||+++++++.++| +.+++++++.||+||++.+++......       
T Consensus       269 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  347 (541)
T 1v25_A          269 TFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSE  347 (541)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred             eEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCc
Confidence            3567899999999865433 3456889999999999999999999 667999999999999998766553321       


Q ss_pred             ----ccCCCCCccccCcEEEEEeCCCCcccCC-C-CcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCC
Q psy14311         74 ----YVPEHVGPPICCCSVKLVDVPEMDYFAH-E-GKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTL  145 (199)
Q Consensus        74 ----~~~~~~G~p~~~~~~~v~d~~~~~~~~~-g-~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g  145 (199)
                          ...+++|+|+++++++|+| +++++++. | +.|||+++||+++.|||++|+.+.  +..+|||+|||+|++|++|
T Consensus       348 ~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG  426 (541)
T 1v25_A          348 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEG  426 (541)
T ss_dssp             HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTC
T ss_pred             cccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCc
Confidence                1347899999999999999 77888885 3 689999999999999999999887  5568999999999999999


Q ss_pred             eEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       146 ~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +++|+         ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       427 ~l~~~---------GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V  465 (541)
T 1v25_A          427 YVEIK---------DRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV  465 (541)
T ss_dssp             CEEEE---------EESSCEEEETTEEEEHHHHHCC----------CE
T ss_pred             eEEEe---------ecccceeeeCCEEECHHHHHHHHHhCCCceEEEE
Confidence            99999         9999999999999999999999999999987654

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.2e-37  Score=265.54  Aligned_cols=182  Identities=21%  Similarity=0.243  Sum_probs=131.3

Q ss_pred             CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC-ccCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD-YVPEHV   79 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~   79 (199)
                      +.++++|+++..|+..... ...+++||.+++||+++++++.+++.+.+++.+++.||+||++..++...... ....++
T Consensus       283 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  362 (544)
T 3o83_A          283 NMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQ  362 (544)
T ss_dssp             CEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCC
T ss_pred             CEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCC
Confidence            3567899999999866432 34457899999999999999999999999999999999999875443322211 234689


Q ss_pred             Cccc-cCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311         80 GPPI-CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIM  156 (199)
Q Consensus        80 G~p~-~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~  156 (199)
                      |+|+ ++++++|+| +++++++.|+.|||+++||+++.|||++|+.+.  +..++||+|||++++|++|+++|+      
T Consensus       363 G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~------  435 (544)
T 3o83_A          363 GRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVV------  435 (544)
T ss_dssp             CEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEE------
T ss_pred             ceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEE------
Confidence            9996 899999999 889999999999999999999999999999887  668999999999999999999999      


Q ss_pred             eEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                         ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       436 ---GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v  469 (544)
T 3o83_A          436 ---GRIKDQINRGGEKIASEEIEKLILLHPEVMHAAL  469 (544)
T ss_dssp             ---EEEC------------------------------
T ss_pred             ---eecCCEEEeCCEEECHHHHHHHHHhCCCccEEEE
Confidence               9999999999999999999999999999987654

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3.7e-37  Score=267.49  Aligned_cols=182  Identities=14%  Similarity=0.139  Sum_probs=160.0

Q ss_pred             CccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeeccc--CC
Q psy14311          2 KGIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQ--GD   73 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~--~~   73 (199)
                      +.++++|++++.|+....   ...++++||.++++|+++++++++++.+.++   +.+++.||+||++..++....  ..
T Consensus       352 t~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~  431 (652)
T 1pg4_A          352 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIE  431 (652)
T ss_dssp             SEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCC
T ss_pred             eEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcC
Confidence            456789999999986542   2345689999999999999999999999987   899999999999976655432  23


Q ss_pred             ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEec--CcccccccCCCcCCC--C--CCCCeeecCceEEEcCCCeE
Q psy14311         74 YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG--NNVFLGYFKDPELNS--I--DELGWHHTGDVGMWLPTLFF  147 (199)
Q Consensus        74 ~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~--~--~~~g~~~TGD~~~~d~~g~l  147 (199)
                      ..++++|+|+++++++|+| +++++++.|+.|||+++|  |+++.|||++|+.+.  +  ..+|||+|||++++|+||+|
T Consensus       432 ~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l  510 (652)
T 1pg4_A          432 LKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYY  510 (652)
T ss_dssp             BCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCE
T ss_pred             ccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcE
Confidence            4678999999999999999 789999999999999999  789999999998775  2  34789999999999999999


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +|+         ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus       511 ~i~---------GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V  547 (652)
T 1pg4_A          511 WIT---------GRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV  547 (652)
T ss_dssp             EEE---------EESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred             EEE---------ecCCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence            999         9999999999999999999999999999987654

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.6e-37  Score=264.41  Aligned_cols=182  Identities=16%  Similarity=0.190  Sum_probs=156.9

Q ss_pred             CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC-CccCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG-DYVPEHV   79 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~   79 (199)
                      +.++++|+++..|+..... ...+++||.+++||+++++++.+++++.+++.+++.||+||++..+...... ....+++
T Consensus       274 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  353 (539)
T 1mdb_A          274 TITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQ  353 (539)
T ss_dssp             SEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCC
T ss_pred             eEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCC
Confidence            3567899999999866433 3456899999999999999999999999999999999999965433221111 1234789


Q ss_pred             CccccC-cEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeee
Q psy14311         80 GPPICC-CSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIM  156 (199)
Q Consensus        80 G~p~~~-~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~  156 (199)
                      |+|+++ .+++|+| +++++++.|+.|||+++||+++.|||++|+.+.  +..+|||+|||+|++|++|+++|.      
T Consensus       354 G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~------  426 (539)
T 1mdb_A          354 GKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVE------  426 (539)
T ss_dssp             CEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE------
T ss_pred             CcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEe------
Confidence            999976 4899999 789999999999999999999999999999887  667999999999999999999999      


Q ss_pred             eEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        157 LMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       157 ~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                         ||.||+||.+|++|+|.|||++|.+||.|.++..
T Consensus       427 ---GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v  460 (539)
T 1mdb_A          427 ---GRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM  460 (539)
T ss_dssp             ---EEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred             ---ccccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence               9999999999999999999999999999987644

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=2.5e-37  Score=262.46  Aligned_cols=182  Identities=14%  Similarity=0.213  Sum_probs=155.8

Q ss_pred             CccccchhHHHHHHHhhhhhcc-CCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDM-GGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG   80 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~-~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G   80 (199)
                      +.++++|+++..++........ ..++|.+++||+++++++.+.+++.+++++++.||+||++.+++.........+++|
T Consensus       276 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G  355 (529)
T 2v7b_A          276 TVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTG  355 (529)
T ss_dssp             SEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCC
T ss_pred             EEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcc
Confidence            3567899999998864322211 247999999999999999999999999999999999999876655544445668899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      +|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+. .+.++||+|||++++|++|++++.         
T Consensus       356 ~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~---------  425 (529)
T 2v7b_A          356 RPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYA---------  425 (529)
T ss_dssp             EECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE---------
T ss_pred             cCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEe---------
Confidence            999999999999 789999999999999999999999999999887 445899999999999999999999         


Q ss_pred             eecCeEEEecceecccccccccccCCcccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       426 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~v  459 (529)
T 2v7b_A          426 GRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAV  459 (529)
T ss_dssp             EEGGGCBC----CBCHHHHHHHHTTSTTEEEEEE
T ss_pred             CccCCeEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence            9999999999999999999999999999986643

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=7.4e-37  Score=261.29  Aligned_cols=176  Identities=15%  Similarity=0.165  Sum_probs=128.5

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc-CCccCCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ-GDYVPEHVG   80 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~G   80 (199)
                      +.++++|++++.+..   ....+++||.+++||+++++++.+.|++.+++.+++.||+||++..++.... ......++|
T Consensus       274 t~~~~~P~~l~~~~~---~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G  350 (562)
T 3ite_A          274 THAGIVPSLLDQTGL---VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIG  350 (562)
T ss_dssp             CEEEECHHHHHHHTC---CGGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEE
T ss_pred             CEEEcCHHHHhhccc---CccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCcccc
Confidence            346788998877642   2345678999999999999999999999889999999999999886665433 334567899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCC--eeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELG--WHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g--~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      +|+++++++++|+++++++++|+.|||+++||+++.|||++|+.+. ...+|  ||+|||++++|++|+|+|+       
T Consensus       351 ~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~-------  423 (562)
T 3ite_A          351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFL-------  423 (562)
T ss_dssp             EECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEE-------
T ss_pred             ccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEE-------
Confidence            9999999999998889999999999999999999999999999887 33345  9999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRS  189 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~  189 (199)
                        ||.+|+||++|++|+|.|||++|.+|+.+.
T Consensus       424 --GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~  453 (562)
T 3ite_A          424 --GRKDEQVKVRGQRLELGEVSEVIRSLSPTD  453 (562)
T ss_dssp             --EEC---------------------------
T ss_pred             --ccccCEEeECcEEECHHHHHHHHHhcCCCc
Confidence              999999999999999999999999984443

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=7.9e-37  Score=261.71  Aligned_cols=180  Identities=18%  Similarity=0.197  Sum_probs=126.5

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC----CccC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG----DYVP   76 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~----~~~~   76 (199)
                      +.++++|+++..|+....  ..+++||.+++||++++++..+.+.+.+ ++.+++.||+||++++++.....    ....
T Consensus       305 t~~~~~P~~~~~l~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~  382 (570)
T 4gr5_A          305 TMLQLSASLFNFLVDEVP--EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA  382 (570)
T ss_dssp             CEEEEEHHHHHHHHHHCG--GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSS
T ss_pred             cEEEecHHHHHHHHhhch--hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCc
Confidence            356789999999885432  3457899999999999999999998887 78999999999998866654321    2244


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CC--------CCCeeecCceEEEcCCCe
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--ID--------ELGWHHTGDVGMWLPTLF  146 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~--------~~g~~~TGD~~~~d~~g~  146 (199)
                      .++|+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+.  +.        .++||+|||+|++|++|+
T Consensus       383 ~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~  461 (570)
T 4gr5_A          383 LPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGV  461 (570)
T ss_dssp             CCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSC
T ss_pred             cccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCe
Confidence            6799999999999999 789999999999999999999999999998876  21        247999999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+|+         ||++|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       462 l~~~---------GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~V  499 (570)
T 4gr5_A          462 LEYV---------GRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAV  499 (570)
T ss_dssp             EEEE---------EC--------------------------------
T ss_pred             EEEE---------cccCCEEEECcEEeCHHHHHHHHhcCCCcceEEE
Confidence            9999         9999999999999999999999999999987654

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.5e-36  Score=273.84  Aligned_cols=184  Identities=21%  Similarity=0.344  Sum_probs=136.3

Q ss_pred             CccccchhHHHHHHHhhhhh-ccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecc-----cCCc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQE-DMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTI-----QGDY   74 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~-~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~-----~~~~   74 (199)
                      +.++++|+++..|+...... ..+++||.+++||+++++++.+++.+.| ++++++.||+||++.+++...     ....
T Consensus       320 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~  399 (979)
T 3tsy_A          320 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV  399 (979)
T ss_dssp             CEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred             eEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence            34678999999998765433 4468999999999999999999999998 899999999999998665542     1223


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEee
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPM  152 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r  152 (199)
                      ..+++|+|+++++++|+|+++++++++|+.|||+++||+++.|||++|+.+.  +..++||+|||++++|++|+++|+  
T Consensus       400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~--  477 (979)
T 3tsy_A          400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIV--  477 (979)
T ss_dssp             CTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE--
T ss_pred             CCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEe--
Confidence            5678999999999999998899999999999999999999999999999887  668999999999999999999999  


Q ss_pred             eeeeeEeeecCeEEEecceecccccccccccCCccccccccc
Q psy14311        153 LVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKS  194 (199)
Q Consensus       153 ~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~~  194 (199)
                             ||.||+||.+|++|+|.|||++|.+||.|.++...
T Consensus       478 -------GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv  512 (979)
T 3tsy_A          478 -------DRLKELIKYKGFQVAPAELEALLIGHPDITDVAVV  512 (979)
T ss_dssp             -------EESCC------------------------------
T ss_pred             -------cCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence                   99999999999999999999999999999876543

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.3e-36  Score=256.71  Aligned_cols=179  Identities=19%  Similarity=0.234  Sum_probs=156.3

Q ss_pred             CccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH   78 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~   78 (199)
                      +.++++|+++..|+....   ....+++||.+++||+++++++.++|++.++..+++.||+||++ .+....  ....++
T Consensus       246 t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--~~~~~~  322 (504)
T 1t5h_X          246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR--QPKTGT  322 (504)
T ss_dssp             CEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--SCSSSS
T ss_pred             eEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--CCCCCc
Confidence            456789999999986642   23345889999999999999999999999999999999999993 232222  345678


Q ss_pred             CCccccCcEEEEEeCCCC---cccCCCCcceEEEe-cCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeee
Q psy14311         79 VGPPICCCSVKLVDVPEM---DYFAHEGKGEVCVR-GNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPML  153 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~---~~~~~g~~Gel~i~-~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~  153 (199)
                      +|+|.++++++++| +.+   ++++.|+.|||+++ |+.++.||+++|+.+. .+.+|||+|||++++|+||+++|.   
T Consensus       323 ~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~---  398 (504)
T 1t5h_X          323 EMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRIL---  398 (504)
T ss_dssp             EEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE---
T ss_pred             cccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEe---
Confidence            99999999999999 555   89999999999999 9999999999999887 446899999999999999999999   


Q ss_pred             eeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        154 VIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       154 ~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                            ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       399 ------GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~V  432 (504)
T 1t5h_X          399 ------GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV  432 (504)
T ss_dssp             ------EEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred             ------CcccCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence                  9999999999999999999999999999987544

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.6e-36  Score=257.16  Aligned_cols=180  Identities=19%  Similarity=0.237  Sum_probs=159.9

Q ss_pred             CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC--CccCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG--DYVPEH   78 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~--~~~~~~   78 (199)
                      +.++++|++++.|...+. ....+++||.+++||+++++++.+.+.+. ++++++.||+||+++.++.....  ....++
T Consensus       260 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  338 (517)
T 3r44_A          260 CIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGS  338 (517)
T ss_dssp             CEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTC
T ss_pred             eEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCC
Confidence            346789999999986643 34456889999999999999999999987 99999999999998866654332  346688


Q ss_pred             CCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         79 VGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        79 ~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      +|+|.++++++++| +++.+++.| .|||+++||+++.|||++|+.+. .+.++||+|||++++|++|+++|+       
T Consensus       339 ~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~-------  409 (517)
T 3r44_A          339 AGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIK-------  409 (517)
T ss_dssp             CBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEE-------
T ss_pred             CCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEe-------
Confidence            99999999999999 788999999 89999999999999999999887 567899999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                        ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus       410 --GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~V  443 (517)
T 3r44_A          410 --DRLKDMIISGGENVYPAEIESVIIGVPGVSEVAV  443 (517)
T ss_dssp             --ECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred             --cCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEE
Confidence              9999999999999999999999999999987654

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=6.2e-37  Score=259.59  Aligned_cols=181  Identities=17%  Similarity=0.194  Sum_probs=153.0

Q ss_pred             ccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC-----Ccc
Q psy14311          3 GIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG-----DYV   75 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-----~~~   75 (199)
                      .++++|+++..++.... ....++++|.++++|+++++++.+++.+.+ ++++++.||+||++..++.....     ...
T Consensus       241 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~  320 (521)
T 3l8c_A          241 IWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYT  320 (521)
T ss_dssp             EEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCS
T ss_pred             EEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCC
Confidence            46789999988875532 334458899999999999999999999988 89999999999998866543321     124


Q ss_pred             CCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C---CCCCeeecCceEEEcCCCeEEEE
Q psy14311         76 PEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I---DELGWHHTGDVGMWLPTLFFFFI  150 (199)
Q Consensus        76 ~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~---~~~g~~~TGD~~~~d~~g~l~~~  150 (199)
                      ..++|+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+.  +   ..++||+|||+|++|++|++++.
T Consensus       321 ~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~  399 (521)
T 3l8c_A          321 RLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYG  399 (521)
T ss_dssp             SCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEE
T ss_pred             ccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEe
Confidence            56799999999999999 789999999999999999999999999999886  2   45789999999999999999999


Q ss_pred             eeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        151 PMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       151 ~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                               ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       400 ---------GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~v  433 (521)
T 3l8c_A          400 ---------GRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVA  433 (521)
T ss_dssp             ---------EEGGGBCC-----CBHHHHHHHHHTSTTEEEEEE
T ss_pred             ---------CcccceEeECCEEeCHHHHHHHHHcCCCcceEEE
Confidence                     9999999999999999999999999999986543

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=4e-36  Score=259.65  Aligned_cols=180  Identities=19%  Similarity=0.162  Sum_probs=153.4

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC----CccC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG----DYVP   76 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~----~~~~   76 (199)
                      +.++++|++++.|+...  ...+++||.+++||++++++..+.+.+.+ +++++|.||+||++.+++.....    ....
T Consensus       255 t~~~~~Ps~~~~l~~~~--~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~  332 (620)
T 4dg8_A          255 DSAWLTASLFNTLVDLD--PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD  332 (620)
T ss_dssp             CEEEEEHHHHHHHHHHC--GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSS
T ss_pred             cEEEccHHHHHHHHhcC--hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCC
Confidence            34678999999987542  34457899999999999988888877766 78999999999999866543221    2345


Q ss_pred             CCCCccccCcEEEEEeCCCCcc-cCCCCcceEEEecCcccccccCCCcCCC--CCCC-------CeeecCceEEEcCCCe
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDY-FAHEGKGEVCVRGNNVFLGYFKDPELNS--IDEL-------GWHHTGDVGMWLPTLF  146 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~-~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~-------g~~~TGD~~~~d~~g~  146 (199)
                      .++|+|+++++++|+| +++++ ++.|+.|||+++|++++.||+++|+.+.  +..+       +||+|||++++|+||+
T Consensus       333 ~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~  411 (620)
T 4dg8_A          333 IPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGR  411 (620)
T ss_dssp             CCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSC
T ss_pred             CCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCe
Confidence            7899999999999999 55555 8899999999999999999999999886  3221       7999999999999999


Q ss_pred             EEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        147 FFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       147 l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ++|+         ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus       412 l~~~---------GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~V  449 (620)
T 4dg8_A          412 LRFI---------GRGDGQVKLNGYRLDLPALEQRFRRQPGILDCAL  449 (620)
T ss_dssp             EEEE---------ECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEE
T ss_pred             EEEE---------ccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEE
Confidence            9999         9999999999999999999999999999987654

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.7e-36  Score=263.85  Aligned_cols=183  Identities=13%  Similarity=0.152  Sum_probs=159.3

Q ss_pred             CccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeeccc---C
Q psy14311          2 KGIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQ---G   72 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~---~   72 (199)
                      +.++++|++++.|.....   ....+++||.++++|+++++++++++.+.++   +.+++.||+||++..++....   .
T Consensus       358 t~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~  437 (663)
T 1ry2_A          358 TQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT  437 (663)
T ss_dssp             SEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCC
T ss_pred             CEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCc
Confidence            456789999999875532   2345689999999999999999999999887   899999999999876655432   2


Q ss_pred             CccCCCCCccccCcEEEEEeCCCCcccCC-CCcceEEEec--CcccccccCCCcCCC--C--CCCCeeecCceEEEcCCC
Q psy14311         73 DYVPEHVGPPICCCSVKLVDVPEMDYFAH-EGKGEVCVRG--NNVFLGYFKDPELNS--I--DELGWHHTGDVGMWLPTL  145 (199)
Q Consensus        73 ~~~~~~~G~p~~~~~~~v~d~~~~~~~~~-g~~Gel~i~~--~~~~~gy~~~~~~~~--~--~~~g~~~TGD~~~~d~~g  145 (199)
                      ...++++|+|+++++++|+|+++|++++. |+.|||++++  |+++.|||++|+.+.  +  ..+|||+|||++++|+||
T Consensus       438 ~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG  517 (663)
T 1ry2_A          438 PMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDG  517 (663)
T ss_dssp             CCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTC
T ss_pred             ccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCC
Confidence            34678999999999999999548999998 9999999999  589999999998775  2  247899999999999999


Q ss_pred             eEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       146 ~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +++|+         ||.||+||++|++|+|.|||++|.+||.|.++..
T Consensus       518 ~l~i~---------GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V  556 (663)
T 1ry2_A          518 YIWIL---------GRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAV  556 (663)
T ss_dssp             CEEEC---------SCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEE
T ss_pred             CEEEE---------eecCCEEEECCEEcCHHHHHHHHHhCCCcceEEE
Confidence            99999         9999999999999999999999999999987654

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.4e-36  Score=255.50  Aligned_cols=181  Identities=20%  Similarity=0.242  Sum_probs=158.0

Q ss_pred             CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccC-----Cc
Q psy14311          2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQG-----DY   74 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~-----~~   74 (199)
                      +.++++|+++..++.... ....++++|.++++|+++++++.+++.+.| ++.+++.||+||++..++.....     ..
T Consensus       237 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  316 (512)
T 3fce_A          237 QVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQY  316 (512)
T ss_dssp             CEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHC
T ss_pred             cEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccccc
Confidence            346789999998875533 334558899999999999999999999998 89999999999999866644322     12


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C---CCCCeeecCceEEEcCCCeEEE
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I---DELGWHHTGDVGMWLPTLFFFF  149 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~---~~~g~~~TGD~~~~d~~g~l~~  149 (199)
                      ...++|+|.++++++++| +++++++.|+.|||+++||+++.|||++|+.+.  +   +.++||+|||++++ ++|++++
T Consensus       317 ~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i  394 (512)
T 3fce_A          317 KSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFY  394 (512)
T ss_dssp             SSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEE
T ss_pred             CCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEE
Confidence            457899999999999999 889999999999999999999999999999887  2   35679999999999 7999999


Q ss_pred             EeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      .         ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       395 ~---------GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~v  429 (512)
T 3fce_A          395 N---------GRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVI  429 (512)
T ss_dssp             E---------EEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEE
T ss_pred             e---------cccCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence            9         9999999999999999999999999999987654

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=6.6e-36  Score=252.87  Aligned_cols=181  Identities=19%  Similarity=0.177  Sum_probs=156.4

Q ss_pred             CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeeccc-----CCc
Q psy14311          2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQ-----GDY   74 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~-----~~~   74 (199)
                      +.++++|+++..++.... ....++++|.++++|+++++++.+++.+.| ++.+++.||+||++..++....     ...
T Consensus       236 t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  315 (511)
T 3e7w_A          236 NVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRS  315 (511)
T ss_dssp             SEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTC
T ss_pred             cEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccC
Confidence            356789999999886543 334558899999999999999999999998 8999999999999886654322     122


Q ss_pred             cCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C-CCCC--eeecCceEEEcCCCeEEE
Q psy14311         75 VPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I-DELG--WHHTGDVGMWLPTLFFFF  149 (199)
Q Consensus        75 ~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~-~~~g--~~~TGD~~~~d~~g~l~~  149 (199)
                      ...++|+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+.  + ..++  ||+|||++++ +||++++
T Consensus       316 ~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~  393 (511)
T 3e7w_A          316 ESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFC  393 (511)
T ss_dssp             SSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEE
T ss_pred             CcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEE
Confidence            456799999999999999 779999999999999999999999999999887  2 1233  7999999999 5999999


Q ss_pred             EeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        150 IPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       150 ~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +         ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       394 ~---------GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~v  428 (511)
T 3e7w_A          394 Q---------GRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVV  428 (511)
T ss_dssp             E---------EESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred             E---------ccccCEEEECCEEeCHHHHHHHHHhCCCcceEEE
Confidence            9         9999999999999999999999999999987654

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=5.1e-36  Score=258.87  Aligned_cols=183  Identities=17%  Similarity=0.210  Sum_probs=158.4

Q ss_pred             CccccchhHHHHHHHhhhhh---ccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC-ccCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQE---DMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD-YVPE   77 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~---~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~   77 (199)
                      +.++++|+++..|+......   ..+++||.+++||+++++++.+++.+.+++++++.||+||++..++...... ....
T Consensus       276 t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  355 (617)
T 3rg2_A          276 NVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIH  355 (617)
T ss_dssp             CEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHH
T ss_pred             cEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccccccc
Confidence            34678999999988654332   2458899999999999999999999999999999999999876444322211 1235


Q ss_pred             CCCccc-cCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeee
Q psy14311         78 HVGPPI-CCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLV  154 (199)
Q Consensus        78 ~~G~p~-~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~  154 (199)
                      ++|+|+ ++.+++|+| +++++++.|+.|||+++|++++.||+++|+.+.  +..++||+|||++++++||+++|+    
T Consensus       356 ~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~----  430 (617)
T 3rg2_A          356 TQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQ----  430 (617)
T ss_dssp             CCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE----
T ss_pred             CCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEE----
Confidence            789997 788999999 889999999999999999999999999999987  678999999999999999999999    


Q ss_pred             eeeEeeecCeEEEecceecccccccccccCCccccccccc
Q psy14311        155 IMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRKS  194 (199)
Q Consensus       155 ~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~~  194 (199)
                           ||.||+||++|++|+|.|||++|.+||.|.++...
T Consensus       431 -----GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv  465 (617)
T 3rg2_A          431 -----GREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV  465 (617)
T ss_dssp             -----EECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEE
T ss_pred             -----eecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence                 99999999999999999999999999999866543

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=6.1e-36  Score=255.95  Aligned_cols=174  Identities=20%  Similarity=0.252  Sum_probs=149.6

Q ss_pred             ccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCC---ccCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGD---YVPEHV   79 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~---~~~~~~   79 (199)
                      .++++|+++..|..     ...+++|.+++||+++++++.+.|.+  .+.+++.||+||++.+++......   ....++
T Consensus       276 ~~~~~P~~~~~l~~-----~~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~v  348 (563)
T 1amu_A          276 VITLPPTYVVHLDP-----ERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPI  348 (563)
T ss_dssp             EEEECHHHHTTSCT-----TTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCC
T ss_pred             EEEeCHHHHHHHHh-----cccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcc
Confidence            45677887766642     23578999999999999999999887  478999999999987665543222   245789


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C------CCCCeeecCceEEEcCCCeEEEEe
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I------DELGWHHTGDVGMWLPTLFFFFIP  151 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~------~~~g~~~TGD~~~~d~~g~l~~~~  151 (199)
                      |+|+++++++|+| +++++++.|+.|||+++||+++.|||++|+.+.  +      ..++||+|||+|++|+||+|+|+ 
T Consensus       349 G~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~-  426 (563)
T 1amu_A          349 GAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL-  426 (563)
T ss_dssp             BEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE-
T ss_pred             cceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEe-
Confidence            9999999999999 789999999999999999999999999998876  2      13469999999999999999999 


Q ss_pred             eeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                              ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       427 --------GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~V  460 (563)
T 1amu_A          427 --------GRIDNQVKIRGHRVELEEVESILLKHMYISETAV  460 (563)
T ss_dssp             --------EEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred             --------ccccCEEEECCEEeCHHHHHHHHHhCCCcceEEE
Confidence                    9999999999999999999999999999987654

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.4e-35  Score=248.33  Aligned_cols=177  Identities=20%  Similarity=0.332  Sum_probs=126.3

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHh-CCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCAL-GCLVIEGYGQTECVAPITLTIQGDYVPEHVG   80 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G   80 (199)
                      +.++++|+++..|+... ....++++|.++.+|++   ++.+.+.+.+ ++.+++.||+||++.+++..... ....++|
T Consensus       250 t~~~~~p~~~~~l~~~~-~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G  324 (509)
T 3ivr_A          250 TVMAEFAPMLGNILDQA-APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAG  324 (509)
T ss_dssp             CEEEEETTHHHHHHHHC-CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCC
T ss_pred             cEEEecHHHHHHHHhcc-cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCccc
Confidence            34678999999998765 33445789999999987   8888888888 89999999999999876655432 2345699


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      +|+++++++|+| +++++++.|+.|||+++|++++.|||++|+.+. .+.+|||+|||++++|++|++++.         
T Consensus       325 ~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~---------  394 (509)
T 3ivr_A          325 RPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYA---------  394 (509)
T ss_dssp             EECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEE---------
T ss_pred             ccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEe---------
Confidence            999999999999 679999999999999999999999999999887 456899999999999999999999         


Q ss_pred             eec--CeEEEecceecccccccccccCCcccccccc
Q psy14311        160 TRI--GLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       160 gR~--~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ||.  +|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       395 GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~v  430 (509)
T 3ivr_A          395 GRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVV  430 (509)
T ss_dssp             EEC---------------------------------
T ss_pred             CCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEE
Confidence            999  8999999999999999999999999987654

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.4e-34  Score=244.13  Aligned_cols=174  Identities=22%  Similarity=0.263  Sum_probs=150.6

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccC--CccCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQG--DYVPEHV   79 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~--~~~~~~~   79 (199)
                      +.++++|+++..|+.......  .+||.+++||+++++++.+.+.+ +++++++.||+||++..+......  ...++++
T Consensus       253 t~~~~~P~~~~~l~~~~~~~~--~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  329 (501)
T 3ipl_A          253 THISLVPQTLNWLMQQGLHEP--YNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV  329 (501)
T ss_dssp             CEEEECHHHHHHHHHHTCCSC--TTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred             cEEEchHHHHHHHHhcCCCCc--CcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence            356789999999986543322  38999999999999999999987 599999999999998755544322  2356889


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEe
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMY  159 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~  159 (199)
                      |+|+++++++++|++      +|+.|||+++|++++.||+++|+.+....+|||+|||++++|++|++++.         
T Consensus       330 G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~---------  394 (501)
T 3ipl_A          330 GMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIY---------  394 (501)
T ss_dssp             BEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEE---------
T ss_pred             CCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEE---------
Confidence            999999999999954      45689999999999999999999887556899999999999999999999         


Q ss_pred             eecCeEEEecceecccccccccccCCcccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       395 GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~v  428 (501)
T 3ipl_A          395 DRRKDLIISGGENIYPYQIETVAKQFPGISDAVC  428 (501)
T ss_dssp             EECCCCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred             ccccceEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence            9999999999999999999999999999987654

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=7.9e-35  Score=249.80  Aligned_cols=176  Identities=21%  Similarity=0.234  Sum_probs=147.1

Q ss_pred             ccccchhHHHHHHHh----hhhhccCCceeEEEEecCCCCHHHHHHHHHHhC------CcEEeecccccCCCceeeccc-
Q psy14311          3 GIYRRNSIWDKLVFK----KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG------CLVIEGYGQTECVAPITLTIQ-   71 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~----~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~------~~i~~~yG~tE~~~~~~~~~~-   71 (199)
                      .+.++|+++..++..    ......+++||.+++||+++++++.++|.+.++      ..+++.||+||++.+++.... 
T Consensus       263 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~  342 (590)
T 3kxw_A          263 ISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPG  342 (590)
T ss_dssp             EEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTT
T ss_pred             eecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCC
Confidence            345778888887753    223345689999999999999999999999883      369999999999987765321 


Q ss_pred             --------------------------CCccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCC
Q psy14311         72 --------------------------GDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN  125 (199)
Q Consensus        72 --------------------------~~~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~  125 (199)
                                                ......++|+|+++  ++|+|++++++++.|+.|||+++||+++.|||++|+.+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t  420 (590)
T 3kxw_A          343 SSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEET  420 (590)
T ss_dssp             SCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHH
T ss_pred             CCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHH
Confidence                                      11234678999988  88899777999999999999999999999999999987


Q ss_pred             C--CCC------CC--eeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEecceecccccccccc-cCCccccc
Q psy14311        126 S--IDE------LG--WHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTV-HGETKRSQ  190 (199)
Q Consensus       126 ~--~~~------~g--~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l-~~~~~~~~  190 (199)
                      .  +..      +|  ||+|||+|++| +|+|+|+         ||.||+||.+|++|+|.|||++| ..||.|..
T Consensus       421 ~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~---------GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~  486 (590)
T 3kxw_A          421 RHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVT---------GRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVL  486 (590)
T ss_dssp             HHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEE---------EESSCHHHHHHHTTHHHHHHHHHHHSGGGGGE
T ss_pred             HHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEE---------cCccceEEECCEecCHHHHHHHHHhcCccccC
Confidence            6  221      24  99999999999 9999999         99999999999999999999999 88998874

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=5.7e-34  Score=263.22  Aligned_cols=180  Identities=20%  Similarity=0.273  Sum_probs=155.5

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhC-CcEEeecccccCCCceeecccC----CccC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG-CLVIEGYGQTECVAPITLTIQG----DYVP   76 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~-~~i~~~yG~tE~~~~~~~~~~~----~~~~   76 (199)
                      +.++++|++++.|.....  ...++||.+++||+++++++.+.|.+.++ .+++|.||+||++..++.....    ....
T Consensus       699 t~~~~~p~~~~~l~~~~~--~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~  776 (1304)
T 2vsq_A          699 NVMFATTALFNLLTDAGE--DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS  776 (1304)
T ss_dssp             CEEEEEHHHHHHHHHHCS--HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSS
T ss_pred             cEEEccHHHHHHHHhhch--hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCC
Confidence            346789999998875421  22467999999999999999999988874 7899999999999876654322    2245


Q ss_pred             CCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--C------CCCCeeecCceEEEcCCCeEE
Q psy14311         77 EHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--I------DELGWHHTGDVGMWLPTLFFF  148 (199)
Q Consensus        77 ~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~------~~~g~~~TGD~~~~d~~g~l~  148 (199)
                      .++|+|+++++++|+| ++++++|.|+.|||+|+|+++++||+|+|+.|.  +      ..++||+|||+|++++||+++
T Consensus       777 ~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~  855 (1304)
T 2vsq_A          777 LPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIE  855 (1304)
T ss_dssp             CCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEE
T ss_pred             CCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEE
Confidence            6899999999999999 789999999999999999999999999999886  2      134599999999999999999


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      |+         ||.||+||++|++|.|.|||.+|.+||.|.++..
T Consensus       856 ~~---------GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V  891 (1304)
T 2vsq_A          856 YA---------GRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV  891 (1304)
T ss_dssp             EE---------EEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEE
T ss_pred             EE---------cCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEE
Confidence            99         9999999999999999999999999999987654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.97  E-value=1.3e-30  Score=216.41  Aligned_cols=168  Identities=15%  Similarity=0.087  Sum_probs=139.3

Q ss_pred             CccccchhHHHHHHHhhhhhcc---CCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCc-eeecccCCccCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDM---GGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAP-ITLTIQGDYVPE   77 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~---~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~   77 (199)
                      +.++++|+++..|+........   +++||.+++||+++++++.+++++.|++++++.||+||+++. +.....   ...
T Consensus       180 t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~  256 (436)
T 3qov_A          180 TALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQN  256 (436)
T ss_dssp             CEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCS
T ss_pred             CEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCC
Confidence            4578999999999866433322   478999999999999999999999999999999999999654 333222   112


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCC------e---EE
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTL------F---FF  148 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g------~---l~  148 (199)
                      .++.|.+++.++++|++++++++.|+.|||++++..-           ...+++||+|||++++|++|      +   ++
T Consensus       257 g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~-----------~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~  325 (436)
T 3qov_A          257 GMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDR-----------EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDR  325 (436)
T ss_dssp             SEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSC-----------CSSCCCSEEEEEEECEECSCCTTCCCSCEECC
T ss_pred             eeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCc-----------CCceEEEEEcCCEEEEcCCCCCCCCCccccCc
Confidence            2566777999999999999999999999999997321           02357899999999999998      5   68


Q ss_pred             EEeeeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        149 FIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       149 ~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      +.         ||.+|+||.+|++|+|.|||++|.+||.|.++.
T Consensus       326 i~---------GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~  360 (436)
T 3qov_A          326 IK---------GRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY  360 (436)
T ss_dssp             CC---------CBSSSCEEETTEEECHHHHHHHHTTCTTEEEEE
T ss_pred             cc---------CccCCEEEECCEEECHHHHHHHHHhCcCcCCcE
Confidence            88         999999999999999999999999999998543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.96  E-value=1.1e-29  Score=210.82  Aligned_cols=169  Identities=13%  Similarity=0.090  Sum_probs=136.5

Q ss_pred             CccccchhHHHHHHHhhhhhc---cCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCc-eeecccCCccCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQED---MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAP-ITLTIQGDYVPE   77 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~---~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~   77 (199)
                      +.++++|+++..|+.......   ..+++|.+++||+++++++.+++++.+++++++.||+||+++. +.......  ..
T Consensus       184 t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~--~~  261 (437)
T 2y27_A          184 DIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET--KD  261 (437)
T ss_dssp             SEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT--CS
T ss_pred             CEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC--CC
Confidence            346789999999986543222   1368999999999999999999999899999999999998543 33332211  11


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC-CCeE-----EEEe
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP-TLFF-----FFIP  151 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~-~g~l-----~~~~  151 (199)
                      .++.|.+++.++++|++++++++.|+.|||++++..-           ...+++||+|||++++|+ +|++     ++. 
T Consensus       262 g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~-----------~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~-  329 (437)
T 2y27_A          262 GPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTK-----------EALPIIRYRTRDLTRLLPGTARTMRRMEKIT-  329 (437)
T ss_dssp             SCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSC-----------SSSCCCSEEEEEEECEECCSSSSSCEECCCC-
T ss_pred             ceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCc-----------CCchhheeecCCEEEEeCCCCCCccccCccc-
Confidence            2455668999999998889999999999999987321           022578999999999999 6986     788 


Q ss_pred             eeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                              ||.+|+|+.+|++|+|.|||++|.+||.|.+.-
T Consensus       330 --------GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~  362 (437)
T 2y27_A          330 --------GRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHY  362 (437)
T ss_dssp             --------EEGGGCEEETTEEECHHHHHHHHTTCTTBCSCC
T ss_pred             --------cccCCeEEECCeEECHHHHHHHHHhCcCcCccE
Confidence                    999999999999999999999999999997543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.96  E-value=9.4e-30  Score=211.65  Aligned_cols=169  Identities=15%  Similarity=0.084  Sum_probs=136.2

Q ss_pred             CccccchhHHHHHHHhhhhhc---cCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCc-eeecccCCccCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQED---MGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAP-ITLTIQGDYVPE   77 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~---~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~   77 (199)
                      +.++++|+++..|+.......   ..+++|.+++||+++++++.+++++.+++++++.||+||+++. +....... ..+
T Consensus       186 t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g  264 (443)
T 2y4o_A          186 KIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-KDG  264 (443)
T ss_dssp             SEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-CCS
T ss_pred             cEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-CCc
Confidence            346789999999986533222   2378999999999999999999999999999999999998543 33322211 111


Q ss_pred             CCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCC-CeE-----EEEe
Q psy14311         78 HVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPT-LFF-----FFIP  151 (199)
Q Consensus        78 ~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~-g~l-----~~~~  151 (199)
                       .+.|.+++.++++|++++++++.|+.|||++++..-           ...+.+||+|||++++|++ |++     ++. 
T Consensus       265 -~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~-----------~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~-  331 (443)
T 2y4o_A          265 -PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTK-----------EAMPVIRYRTRDLTALLPPTARAMRRLAKIT-  331 (443)
T ss_dssp             -EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSC-----------SSSCCSSEEEEEEECEECCSSSSSCEECCCC-
T ss_pred             -eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCCc-----------ccChhheeecCCEEEEcCCCCCCccccCccc-
Confidence             444667899999998889999999999999987321           0225789999999999999 986     777 


Q ss_pred             eeeeeeEeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        152 MLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       152 r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                              ||.+|+|+.+|++|+|.|||++|.+||.|.+..
T Consensus       332 --------GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~  364 (443)
T 2y4o_A          332 --------GRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF  364 (443)
T ss_dssp             --------EESSCCEEETTEEECHHHHHHHHHTSTTEEEEE
T ss_pred             --------cccCCeEEECCEEECHHHHHHHHHhCcCcCccE
Confidence                    999999999999999999999999999996543

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.96  E-value=3.7e-29  Score=209.54  Aligned_cols=145  Identities=21%  Similarity=0.254  Sum_probs=123.0

Q ss_pred             cccchhHHHHHHHh-----hhhhccCCceeEEEEecCCCCHHHHHHHHHHhC------CcEEeecccccCCCceeecccC
Q psy14311          4 IYRRNSIWDKLVFK-----KVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG------CLVIEGYGQTECVAPITLTIQG   72 (199)
Q Consensus         4 ~~~~P~~~~~l~~~-----~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~------~~i~~~yG~tE~~~~~~~~~~~   72 (199)
                      ++++|+++..++..     ......+++||.+++||+++++++.++|.+.++      +.+++.||+||++..++.....
T Consensus       285 ~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  364 (480)
T 3t5a_A          285 FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPG  364 (480)
T ss_dssp             EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTT
T ss_pred             EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccC
Confidence            67889999888753     223455689999999999999999999999984      3699999999999877655432


Q ss_pred             C-------------------------ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC-
Q psy14311         73 D-------------------------YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-  126 (199)
Q Consensus        73 ~-------------------------~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~-  126 (199)
                      .                         ....++|+|++ ++++|+|++++++++.|+.|||+++||+++.|||++|+++. 
T Consensus       365 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~  443 (480)
T 3t5a_A          365 QPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESER  443 (480)
T ss_dssp             SSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHH
T ss_pred             CCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHH
Confidence            1                         23358999999 99999997779999999999999999999999999998876 


Q ss_pred             -CC-----------CCCeeecCceEEEcCCCeEEEE
Q psy14311        127 -ID-----------ELGWHHTGDVGMWLPTLFFFFI  150 (199)
Q Consensus       127 -~~-----------~~g~~~TGD~~~~d~~g~l~~~  150 (199)
                       +.           .++||+|||+|++| ||+|+|+
T Consensus       444 ~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~  478 (480)
T 3t5a_A          444 TFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFII  478 (480)
T ss_dssp             HHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEEC
T ss_pred             HHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEe
Confidence             32           56799999999997 9999999

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.95  E-value=5e-29  Score=202.37  Aligned_cols=155  Identities=14%  Similarity=0.091  Sum_probs=132.7

Q ss_pred             CccccchhHHHHHHHhhhhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCCc
Q psy14311          2 KGIYRRNSIWDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGP   81 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~   81 (199)
                      +.++++|+++..|+........+++||.+++||+++++++.+++++ +++++++.||+||++..++.........+++|.
T Consensus       125 t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~  203 (358)
T 4gs5_A          125 DFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYV  203 (358)
T ss_dssp             SEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEE
T ss_pred             eEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeec
Confidence            4567899999999987666667789999999999999999999987 489999999999999977777666666788999


Q ss_pred             cccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeee
Q psy14311         82 PICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTR  161 (199)
Q Consensus        82 p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR  161 (199)
                      +.|++++.+.+           .||++++++..              .++||+|||++++|++| ++++         ||
T Consensus       204 ~~pgv~~~~~~-----------~Gel~~~g~~~--------------~~g~~~TGDlg~~d~~g-~~~~---------GR  248 (358)
T 4gs5_A          204 FLPGIQYGVDE-----------RGCLHISGAVT--------------NGQTVQTNDLVEIHGNA-FQWI---------GR  248 (358)
T ss_dssp             ECTTCEEEECT-----------TSEEEEESGGG--------------TTCCEEEEEEEEECSSE-EEEE---------EE
T ss_pred             cCCCeEEEecC-----------cCceEEecccc--------------cCcceecCCccccccCc-eEEc---------cc
Confidence            99999887744           59999987643              47899999999999988 5667         99


Q ss_pred             cCeEEEecceeccccccccccc---CCccccccc
Q psy14311        162 IGLRIRSRSRHSLGKRVEGTVH---GETKRSQSR  192 (199)
Q Consensus       162 ~~~~i~~~g~~v~~~eiE~~l~---~~~~~~~~~  192 (199)
                      .||+||++|++|+|.|||++|.   .||+|.++.
T Consensus       249 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~  282 (358)
T 4gs5_A          249 ADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAF  282 (358)
T ss_dssp             GGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCE
T ss_pred             ccCeEEECCEEECHHHHHHHHHHhccCCCccEEE
Confidence            9999999999999999998774   588887653

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.79  E-value=8e-20  Score=148.41  Aligned_cols=152  Identities=15%  Similarity=0.087  Sum_probs=105.1

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHH-HHh-CCcEEeecccccCCCceeecccCCccCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLR-CAL-GCLVIEGYGQTECVAPITLTIQGDYVPEHV   79 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~-~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~   79 (199)
                      .++++|+++..|+..... ...+++||.+++||+++++++.+++. +.| ++.+++.||+||+++++.....     .++
T Consensus       208 ~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~  282 (369)
T 3hgu_A          208 FLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSE  282 (369)
T ss_dssp             EEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTT
T ss_pred             EEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccC
Confidence            467899999999865322 23447899999999999999999999 898 8999999999999876543221     158


Q ss_pred             Ccc------ccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcCCCeEEEEeee
Q psy14311         80 GPP------ICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLPTLFFFFIPML  153 (199)
Q Consensus        80 G~p------~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~~g~l~~~~r~  153 (199)
                      |+|      +++++++|+|++++++++.|+.|||++++..-..-+            -.|+|||++...+...-|+.++.
T Consensus       283 G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l------------~ry~tgD~~~~~~~~~g~~~d~~  350 (369)
T 3hgu_A          283 SQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFY------------PRVAERDTAIRLPGVSGFAGDRL  350 (369)
T ss_dssp             CSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEEE------------EEEEEEEEEEEECCSTTCSSCEE
T ss_pred             CCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCccccc------------ccccCCceEEEecCCCCCcCccc
Confidence            999      999999999976999999999999999863211001            13789999988654222444333


Q ss_pred             eeeeEeeecCeEEEecce
Q psy14311        154 VIMLMYTRIGLRIRSRSR  171 (199)
Q Consensus       154 ~~~~~~gR~~~~i~~~g~  171 (199)
                      +.-.-++|.++..++.|.
T Consensus       351 ~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          351 ADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEEECC-----------
T ss_pred             ccceeccccCCCceeeec
Confidence            333344666766666654

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.61  E-value=2.3e-07  Score=79.06  Aligned_cols=136  Identities=15%  Similarity=0.176  Sum_probs=87.0

Q ss_pred             ccCCc---eeEEEEecCCCCHHHHHHHHHHh-CCcEE-eecccccCCCceeecccCCccCCCCCcc-cc-CcEEEEEeCC
Q psy14311         22 DMGGN---LRLMLAGSAPLAGNVLTFLRCAL-GCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPP-IC-CCSVKLVDVP   94 (199)
Q Consensus        22 ~~~~s---lr~i~~~G~~~~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~G~p-~~-~~~~~v~d~~   94 (199)
                      ...++   +..++.||.   ..-..+++..+ +.++. ..|++||+ .+.. +......+...+.. ++ .+.+..++.+
T Consensus       294 ~lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi-~~~p~~~~~~~~~~L~~~~~ffEFip~~  368 (581)
T 4eql_A          294 RLWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGI-NLDPLCKPEDVSYTFMPNMSYFEFIPMD  368 (581)
T ss_dssp             HHSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEE-CSCTTSCGGGCCEEECTTSSEEEEEECS
T ss_pred             HhCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeee-ccCCCCCcccCceeecCCcEEEEEEecc
Confidence            34577   455555552   44455666655 57777 99999995 3222 22211111222221 22 2445555422


Q ss_pred             CC--------cccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC----CCeEEEEeeeeeeeEeeec
Q psy14311         95 EM--------DYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP----TLFFFFIPMLVIMLMYTRI  162 (199)
Q Consensus        95 ~~--------~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~----~g~l~~~~r~~~~~~~gR~  162 (199)
                      +.        ..+..|+.+||+++..+   |.|.            |++||+.++..    ...+.|+         ||.
T Consensus       369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R------------Yr~GD~v~v~~f~~~~p~i~f~---------gR~  424 (581)
T 4eql_A          369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR------------MRVGDIVLVTGFYNNAPQFKFV---------RRE  424 (581)
T ss_dssp             TTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS------------EECCEEEEEEEEETTEEEEEEE---------EET
T ss_pred             ccCCCcEeCHHHcCCCceEEEEEeecc---ceee------------EEcCCEEEEcccCCCCcEEEEE---------Eec
Confidence            21        23568999999997542   2222            89999999975    4677888         999


Q ss_pred             CeEEEecceecccccccccccCCc
Q psy14311        163 GLRIRSRSRHSLGKRVEGTVHGET  186 (199)
Q Consensus       163 ~~~i~~~g~~v~~~eiE~~l~~~~  186 (199)
                      +++|+..|+++++.+||++|.+.-
T Consensus       425 ~~~l~~~Gekl~~~~v~~al~~a~  448 (581)
T 4eql_A          425 NVVLSIDSDKTNEEDLFKAVSQAK  448 (581)
T ss_dssp             TEEECSSSCCEEHHHHHHHHHHC-
T ss_pred             CCEEEeeeeECCHHHHHHHHHHHH
Confidence            999999999999999999998543

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.59  E-value=1.3e-07  Score=80.79  Aligned_cols=134  Identities=13%  Similarity=0.146  Sum_probs=86.1

Q ss_pred             ccCCcee---EEEEecCCCCHHHHHHHHHHh-CCcEE-eecccccCCCceeecccCCccCCCCCc-ccc-CcEEEEEeCC
Q psy14311         22 DMGGNLR---LMLAGSAPLAGNVLTFLRCAL-GCLVI-EGYGQTECVAPITLTIQGDYVPEHVGP-PIC-CCSVKLVDVP   94 (199)
Q Consensus        22 ~~~~slr---~i~~~G~~~~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~G~-p~~-~~~~~v~d~~   94 (199)
                      ...++++   .++.||  + .....+++..+ +.++. ..|++||+ .+..+. .....++..+. .+| ...+..++.+
T Consensus       299 ~lWPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~-~p~~~p~~~~~~L~p~~~ffEFIP~~  373 (609)
T 4b2g_A          299 RIWPNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNL-NPMSKPSEVSYTIMPNMAYFEFLPHE  373 (609)
T ss_dssp             HHSTTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECS-CTTSCGGGCCEEECTTSCEEEEEEGG
T ss_pred             HhCCCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccce-eeeeec-CCCCCcccCceeecCCcEEEEEEecc
Confidence            3457755   444444  2 44445666555 57766 99999996 323322 11111122222 122 2444555432


Q ss_pred             CC---------------cccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC----CCeEEEEeeeee
Q psy14311         95 EM---------------DYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP----TLFFFFIPMLVI  155 (199)
Q Consensus        95 ~~---------------~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~----~g~l~~~~r~~~  155 (199)
                      +.               ..|..|+.+||++...   .|+|.            |++||+.+++.    ...+.|+     
T Consensus       374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R------------Yr~GD~v~v~~f~~~~p~i~~~-----  433 (609)
T 4b2g_A          374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR------------YRVGDILRVTGFHNSAPQFHFV-----  433 (609)
T ss_dssp             GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS------------EEEEEEEEEEEEETTEEEEEEE-----
T ss_pred             ccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh------------eecCCEEEEeecCCCCcEEEEE-----
Confidence            21               3467899999999643   24433            89999999973    4778888     


Q ss_pred             eeEeeecCeEEEecceecccccccccccC
Q psy14311        156 MLMYTRIGLRIRSRSRHSLGKRVEGTVHG  184 (199)
Q Consensus       156 ~~~~gR~~~~i~~~g~~v~~~eiE~~l~~  184 (199)
                          ||.+++|+..|+++++.+||++|..
T Consensus       434 ----gR~~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          434 ----RRKNVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             ----EETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             ----EecCCeEEccccCCCHHHHHHHHHH
Confidence                9999999999999999999999885

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.36  E-value=9.2e-07  Score=75.25  Aligned_cols=135  Identities=17%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             ccCCceeE--EEEecCCCCHHHHHHHHHHh-CCcEE-eecccccCCCceeecccCCccCCCCCcc-ccC-cEEEEEeCCC
Q psy14311         22 DMGGNLRL--MLAGSAPLAGNVLTFLRCAL-GCLVI-EGYGQTECVAPITLTIQGDYVPEHVGPP-ICC-CSVKLVDVPE   95 (199)
Q Consensus        22 ~~~~slr~--i~~~G~~~~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~G~p-~~~-~~~~v~d~~~   95 (199)
                      ...++++.  ++.+|. + .....+++..+ +.++. ..|++||+ .+.. +......++..+.. +|+ ..+..+..++
T Consensus       299 ~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi-~~~p~~~~~~~~~~L~p~~~ffEFiP~~~  374 (581)
T 4epl_A          299 ALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAA-NVTPRLSPEEATFAVIPNLGYFEFLPVSE  374 (581)
T ss_dssp             HHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEE-CCCTTSCTTTCCEEECTTSCEEEEEEC--
T ss_pred             HhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeee-ecCCCCCccccceeecCCcEEEEEEeccc
Confidence            44578863  334442 2 34445666655 57766 99999996 2222 22222222222221 222 3334443221


Q ss_pred             C----------cccCCCCcceEEEecCcccccccCCCcCCCCCCCCeeecCceEEEcC----CCeEEEEeeeeeeeEeee
Q psy14311         96 M----------DYFAHEGKGEVCVRGNNVFLGYFKDPELNSIDELGWHHTGDVGMWLP----TLFFFFIPMLVIMLMYTR  161 (199)
Q Consensus        96 ~----------~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~g~~~TGD~~~~d~----~g~l~~~~r~~~~~~~gR  161 (199)
                      .          ..|..|+.+||++...+   |.|.            |++||+.++..    ...+.|+         ||
T Consensus       375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R------------Yr~GD~v~v~g~~~~~p~~~~~---------gR  430 (581)
T 4epl_A          375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR------------YRLGDVVKVIGFYNNTPQLKFI---------CR  430 (581)
T ss_dssp             -----CCCEEGGGCCTTCEEEEEEESTT---SCSS------------EEEEEEEEEEEEETTEEEEEEE---------EE
T ss_pred             ccCCCCceeeHHHcCCCCeEEEEEeecc---ceee------------EEcCCEEEEecccCCCcEEEEE---------ee
Confidence            1          34678999999997542   3322            89999999864    2567777         99


Q ss_pred             cCeEEEecceecccccccccccC
Q psy14311        162 IGLRIRSRSRHSLGKRVEGTVHG  184 (199)
Q Consensus       162 ~~~~i~~~g~~v~~~eiE~~l~~  184 (199)
                      .++++++.|+++++.+||++|..
T Consensus       431 ~~~~l~~~Ge~~~~~~v~~al~~  453 (581)
T 4epl_A          431 RNLILSINIDKNTERDLQLSVES  453 (581)
T ss_dssp             TTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             cCCeEEeeeeECCHHHHHHHHHH
Confidence            99999999999999999999875

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.13  E-value=3.1e-07  Score=61.33  Aligned_cols=34  Identities=6%  Similarity=-0.081  Sum_probs=30.7

Q ss_pred             eecCeEEEecceecccccccccccCCcccccccc
Q psy14311        160 TRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       160 gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      .|.||+|+++|.|++|.|||++|.+||++..+..
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~v   34 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYL   34 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEE
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceE
Confidence            3899999999999999999999999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-20
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-18
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-18
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-14
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	3e-10
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	3e-07
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	4e-07

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 86.9 bits (214), Expect = 1e-20
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)

Query: 28  RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVGPPICCCS 87
            +   G+           +      + +GYG TE  + I +T +GD  P  VG  +    
Sbjct: 308 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 367

Query: 88  VKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGDVGMWLPTL 145
            K+VD+          +GE+CVRG  +  GY  +PE     ID+ GW H+GD+  W    
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427

Query: 146 FFFFI 150
            FF +
Sbjct: 428 HFFIV 432

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 80.1 bits (197), Expect = 2e-18
 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 12/136 (8%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQGDY--VPEHVG 80
           +LR++ +   P+      +    +G   C V++ + QTE    +   + G          
Sbjct: 375 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSAT 434

Query: 81  PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGN--NVFLGYFKDPELNS----IDELGWHH 134
            P       LVD  E        +G + +  +        F D E             + 
Sbjct: 435 RPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493

Query: 135 TGDVGMWLPTLFFFFI 150
           +GD        +++  
Sbjct: 494 SGDGARRDEDGYYWIT 509

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 79.2 bits (194), Expect = 4e-18
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYV---------- 75
            LR ++ G +    +++      +G  V +GYG TE    +       ++          
Sbjct: 287 TLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 345

Query: 76  -PEHVGPPICCCSVKLVDVPEMDYFAHEGK--GEVCVRGNNVFLGYFKDPELN--SIDEL 130
                G PI    +++ D  E      +GK  GEV ++G  +  GY+ + E    ++   
Sbjct: 346 LKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD 404

Query: 131 GWHHTGDVGMWLPTLFFFFI 150
           G+  TGD+ +W    +    
Sbjct: 405 GFFRTGDIAVWDEEGYVEIK 424

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (167), Expect = 2e-14
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 26  NLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQGDYVPEH---V 79
           +LR + +   P+A  V  +    +G     +++ Y QTE  + +   + G   P      
Sbjct: 362 SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSA 421

Query: 80  GPPICCCSVKLVDVPEMDYFA-HEGKGEVCVRGN--NVFLGYFKDPELN----SIDELGW 132
             P       ++D    +       +G + V+    +     +K+ +           G+
Sbjct: 422 SFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY 481

Query: 133 HHTGDVGMWLPTLFFFFI 150
           + TGD        + + +
Sbjct: 482 YFTGDGAAKDKDGYIWIL 499

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 56.4 bits (135), Expect = 3e-10
 Identities = 34/134 (25%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 28  RLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEH---VGPPIC 84
            L+ AGSA     V    +       I  YG TE     T  +       H   +G PI 
Sbjct: 281 TLITAGSATSPSLVN---KWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQ 337

Query: 85  CCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--------IDELGWHHTG 136
              + +VD   +   +    GE+C+ G  +  GY+K PEL S        +     + TG
Sbjct: 338 NTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG 396

Query: 137 DVGMWLPTLFFFFI 150
           D   WL      ++
Sbjct: 397 DQARWLSDGNIEYL 410

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 2/133 (1%)

Query: 20  QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHV 79
           ++D+     L + G+   A             L          V    L    + +    
Sbjct: 294 RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQ 353

Query: 80  GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELN--SIDELGWHHTGD 137
           G P+       V             G +  RG     GY+K  E N  S  E G++ TGD
Sbjct: 354 GKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGD 413

Query: 138 VGMWLPTLFFFFI 150
           +       +    
Sbjct: 414 IVRLTRDGYIVVE 426

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 1/141 (0%)

Query: 11  WDKLVFKKVQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTI 70
                          +LR +    A +   VL  +   L    +  YG TE +  + +  
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQ 317

Query: 71  QGDYVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS-IDE 129
                    G       V++    +      E    +    ++ F+GY   P+  +   +
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377

Query: 130 LGWHHTGDVGMWLPTLFFFFI 150
            GW+ T DV +W P      +
Sbjct: 378 DGWYRTSDVAVWTPEGTVRIL 398

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.96
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.95
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.93

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.9e-36  Score=259.46  Aligned_cols=182  Identities=14%  Similarity=0.157  Sum_probs=159.4

Q ss_pred             CccccchhHHHHHHHhhh---hhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeecccC--C
Q psy14311          2 KGIYRRNSIWDKLVFKKV---QEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQG--D   73 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~---~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~~--~   73 (199)
                      +.++++|++++.|+....   ...++++||.++++|+++++++++++.+.++   +.+++.||+||+++.++.....  .
T Consensus       348 t~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~  427 (643)
T d1pg4a_         348 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIE  427 (643)
T ss_dssp             SEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCC
T ss_pred             cEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccC
Confidence            457789999999986543   3345689999999999999999999999984   6799999999999866654332  3


Q ss_pred             ccCCCCCccccCcEEEEEeCCCCcccCCCCcceEEEec--CcccccccCCCcCCC----CCCCCeeecCceEEEcCCCeE
Q psy14311         74 YVPEHVGPPICCCSVKLVDVPEMDYFAHEGKGEVCVRG--NNVFLGYFKDPELNS----IDELGWHHTGDVGMWLPTLFF  147 (199)
Q Consensus        74 ~~~~~~G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~----~~~~g~~~TGD~~~~d~~g~l  147 (199)
                      ..++++|+|+++++++++| ++|++++.|+.|||++++  |+++.+||++++.+.    ...+|||+|||++++|++|+|
T Consensus       428 ~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l  506 (643)
T d1pg4a_         428 LKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYY  506 (643)
T ss_dssp             BCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCE
T ss_pred             CCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceE
Confidence            4678999999999999999 789999999999999998  578999999998765    456899999999999999999


Q ss_pred             EEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        148 FFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       148 ~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +++         ||.+|+||.+|++|+|.|||++|.+||+|.++..
T Consensus       507 ~i~---------GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaV  543 (643)
T d1pg4a_         507 WIT---------GRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV  543 (643)
T ss_dssp             EEE---------EESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred             EEe---------cccccEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence            999         9999999999999999999999999999987643

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2e-36  Score=253.95  Aligned_cols=182  Identities=25%  Similarity=0.410  Sum_probs=157.2

Q ss_pred             CccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCC-cEEeecccccCCCceeecccCCccCCCC
Q psy14311          2 KGIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGC-LVIEGYGQTECVAPITLTIQGDYVPEHV   79 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~   79 (199)
                      +.++.+|+++..++..... ....++++.+++||+++++++.+++.+.++. .+++.||+||++..++........++++
T Consensus       280 t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~sv  359 (541)
T d1lcia_         280 QSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV  359 (541)
T ss_dssp             SEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCC
T ss_pred             cccccCccccccccccccccccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCcc
Confidence            4567889999888866443 4445889999999999999999999999864 6899999999999888776666778999


Q ss_pred             CccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeee
Q psy14311         80 GPPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIML  157 (199)
Q Consensus        80 G~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~  157 (199)
                      |+|+|+++++|+|++++++++.|+.|||+++|++++.||+++++.+.  ...++||+|||++++|++|++++.       
T Consensus       360 G~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~-------  432 (541)
T d1lcia_         360 GKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV-------  432 (541)
T ss_dssp             BEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------
T ss_pred             ccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEe-------
Confidence            99999999999999999999999999999999999999999988776  667899999999999999999999       


Q ss_pred             EeeecCeEEEecceecccccccccccCCccccccc
Q psy14311        158 MYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       158 ~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                        ||.+|+||.+|++|+|.|||++|.+||.|.++.
T Consensus       433 --GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~  465 (541)
T d1lcia_         433 --DRLKSLIKYKGYQVAPAELESILLQHPNIFDAG  465 (541)
T ss_dssp             -------CEEETTEEECHHHHHHHHHTSTTEEEEE
T ss_pred             --eeecCEEEECCEEECHHHHHHHHHhCCCccEEE
Confidence              999999999999999999999999999998764

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.3e-35  Score=244.71  Aligned_cols=181  Identities=19%  Similarity=0.278  Sum_probs=148.2

Q ss_pred             CccccchhHHHHHHHhhh-hhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCc------
Q psy14311          2 KGIYRRNSIWDKLVFKKV-QEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY------   74 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~~-~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~------   74 (199)
                      +.++++|+++..++.... .....++||.+++||+++++++.+++++ ++..+++.||+||++.+++.......      
T Consensus       262 t~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~  340 (534)
T d1v25a_         262 TFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSE  340 (534)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred             cccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCc
Confidence            346789999998886543 3445689999999999999999999886 48999999999999998776532211      


Q ss_pred             -----cCCCCCccccCcEEEEEeCCCCcccCC--CCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCC
Q psy14311         75 -----VPEHVGPPICCCSVKLVDVPEMDYFAH--EGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTL  145 (199)
Q Consensus        75 -----~~~~~G~p~~~~~~~v~d~~~~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g  145 (199)
                           ..+++|+|+++++++|+| +++++++.  ++.|||+++|++++.||+++++.+.  +..+|||+|||+|++|+||
T Consensus       341 ~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G  419 (534)
T d1v25a_         341 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEG  419 (534)
T ss_dssp             HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTC
T ss_pred             cccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCc
Confidence                 247899999999999999 77888766  6789999999999999999998876  6789999999999999999


Q ss_pred             eEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       146 ~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      ++++.         ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       420 ~l~~~---------GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v  458 (534)
T d1v25a_         420 YVEIK---------DRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV  458 (534)
T ss_dssp             CEEEE---------EESSCEEEETTEEEEHHHHHCC----------CE
T ss_pred             cEEEe---------cccccEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence            99999         9999999999999999999999999999987643

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-34  Score=244.24  Aligned_cols=183  Identities=14%  Similarity=0.173  Sum_probs=155.5

Q ss_pred             CccccchhHHHHHHHhh---hhhccCCceeEEEEecCCCCHHHHHHHHHHhC---CcEEeecccccCCCceeecccC---
Q psy14311          2 KGIYRRNSIWDKLVFKK---VQEDMGGNLRLMLAGSAPLAGNVLTFLRCALG---CLVIEGYGQTECVAPITLTIQG---   72 (199)
Q Consensus         2 ~~~~~~P~~~~~l~~~~---~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~---~~i~~~yG~tE~~~~~~~~~~~---   72 (199)
                      +.++++|++++.|....   ....++++||.++++|+++++++++++.+.++   ..+++.||+||++..+......   
T Consensus       335 t~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~  414 (640)
T d1ry2a_         335 TQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT  414 (640)
T ss_dssp             SEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCC
T ss_pred             cEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcC
Confidence            45678999999887543   23445689999999999999999999999985   4699999999999866654332   


Q ss_pred             CccCCCCCccccCcEEEEEeCCCCcccCC-CCcceEEEec--CcccccccCCCcCCC----CCCCCeeecCceEEEcCCC
Q psy14311         73 DYVPEHVGPPICCCSVKLVDVPEMDYFAH-EGKGEVCVRG--NNVFLGYFKDPELNS----IDELGWHHTGDVGMWLPTL  145 (199)
Q Consensus        73 ~~~~~~~G~p~~~~~~~v~d~~~~~~~~~-g~~Gel~i~~--~~~~~gy~~~~~~~~----~~~~g~~~TGD~~~~d~~g  145 (199)
                      ...++++|+|+++++++++|+++++.++. +..|||++++  |+++.|||++++++.    ...+|||+|||+|++|++|
T Consensus       415 ~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG  494 (640)
T d1ry2a_         415 PMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDG  494 (640)
T ss_dssp             CCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTC
T ss_pred             CCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCC
Confidence            23668999999999999999777665544 5679999987  689999999998876    3457999999999999999


Q ss_pred             eEEEEeeeeeeeEeeecCeEEEecceecccccccccccCCcccccccc
Q psy14311        146 FFFFIPMLVIMLMYTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSRK  193 (199)
Q Consensus       146 ~l~~~~r~~~~~~~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~~  193 (199)
                      +|+|+         ||.+|+||.+|++|+|.|||++|.+||.|.++..
T Consensus       495 ~l~i~---------GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~V  533 (640)
T d1ry2a_         495 YIWIL---------GRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAV  533 (640)
T ss_dssp             CEEEC---------SCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEE
T ss_pred             CEEEE---------EcCCCEEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence            99999         9999999999999999999999999999987643

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.96  E-value=2.1e-30  Score=216.11  Aligned_cols=160  Identities=21%  Similarity=0.308  Sum_probs=141.3

Q ss_pred             hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCc---cCCCCCccccCcEEEEEeCCCCc
Q psy14311         21 EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDY---VPEHVGPPICCCSVKLVDVPEMD   97 (199)
Q Consensus        21 ~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~---~~~~~G~p~~~~~~~v~d~~~~~   97 (199)
                      ...+.+++.++++|+++++++.+++.+  ++.+++.||+||++.+++.......   ...+.+.+.++..+.+.| ++++
T Consensus       273 ~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~  349 (514)
T d1amua_         273 PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQ  349 (514)
T ss_dssp             TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSC
T ss_pred             ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccce
Confidence            344688999999999999999887765  6889999999999997766554333   346788899999999999 9999


Q ss_pred             ccCCCCcceEEEecCcccccccCCCcCCC--------CCCCCeeecCceEEEcCCCeEEEEeeeeeeeEeeecCeEEEec
Q psy14311         98 YFAHEGKGEVCVRGNNVFLGYFKDPELNS--------IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLMYTRIGLRIRSR  169 (199)
Q Consensus        98 ~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--------~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~~gR~~~~i~~~  169 (199)
                      +++.|+.|||+++||+++.||+++++.+.        .+.++||+|||+|++|++|+|+++         ||.+|+|+.+
T Consensus       350 ~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~---------GR~~d~i~~~  420 (514)
T d1amua_         350 LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL---------GRIDNQVKIR  420 (514)
T ss_dssp             BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE---------EEGGGEEEET
T ss_pred             ecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEE---------ecccCEEEEC
Confidence            99999999999999999999999997653        245789999999999999999999         9999999999


Q ss_pred             ceecccccccccccCCccccccc
Q psy14311        170 SRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       170 g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                      |++|+|.+||++|.+||.|.++.
T Consensus       421 G~~i~p~~IE~~l~~~~~V~~~~  443 (514)
T d1amua_         421 GHRVELEEVESILLKHMYISETA  443 (514)
T ss_dssp             TEEEEHHHHHHHHTTSTTEEEEE
T ss_pred             CEEECHHHHHHHHHhCCCccEEE
Confidence            99999999999999999998654

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=6.5e-29  Score=207.56  Aligned_cols=181  Identities=16%  Similarity=0.174  Sum_probs=153.7

Q ss_pred             ccccchhHHHHHHHhhhh-hccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeeccc-CCccCCCCC
Q psy14311          3 GIYRRNSIWDKLVFKKVQ-EDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQ-GDYVPEHVG   80 (199)
Q Consensus         3 ~~~~~P~~~~~l~~~~~~-~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~G   80 (199)
                      .+..+|+.+..+...... ....++++.+++||+++++...+++.+.++..+...|+.+|.+..+..... .....+++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  354 (536)
T d1mdba_         275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQG  354 (536)
T ss_dssp             EEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCC
T ss_pred             cccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcc
Confidence            456788888877755433 344588999999999999999999999999999999999988765443332 223457899


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEecCcccccccCCCcCCC--CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRGNNVFLGYFKDPELNS--IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~--~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      .|+++....+++.+++++++.++.|||+++|+.++.||+++++.+.  ...++||+|||++++|+||+|++.        
T Consensus       355 ~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~--------  426 (536)
T d1mdba_         355 KPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVE--------  426 (536)
T ss_dssp             EESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE--------
T ss_pred             cCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecC--------
Confidence            9987665555555899999999999999999999999999988776  678899999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCccccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQSR  192 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~~  192 (199)
                       ||.+|+||++|++|+|.|||++|.+||.|.++.
T Consensus       427 -GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~  459 (536)
T d1mdba_         427 -GRAKDQINRGGEKVAAEEVENHLLAHPAVHDAA  459 (536)
T ss_dssp             -EEGGGCEECSSCEECHHHHHHHHTTSTTEEEEE
T ss_pred             -CCcceEEEECCEEECHHHHHHHHHhCCCccEEE
Confidence             999999999999999999999999999998653

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.93  E-value=7.5e-27  Score=192.68  Aligned_cols=178  Identities=19%  Similarity=0.218  Sum_probs=143.8

Q ss_pred             cccchhHHHHHHHhh---hhhccCCceeEEEEecCCCCHHHHHHHHHHhCCcEEeecccccCCCceeecccCCccCCCCC
Q psy14311          4 IYRRNSIWDKLVFKK---VQEDMGGNLRLMLAGSAPLAGNVLTFLRCALGCLVIEGYGQTECVAPITLTIQGDYVPEHVG   80 (199)
Q Consensus         4 ~~~~P~~~~~l~~~~---~~~~~~~slr~i~~~G~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G   80 (199)
                      ++.+|+.+..+....   ......++||.+++||++++++++.++...++..+.+.||++|++..+...........+.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~  327 (503)
T d3cw9a1         248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPG  327 (503)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCC
T ss_pred             cccccccccccccccccccccccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccccccc
Confidence            456777777665432   23344478999999999999999999999999999999999999887666555444444444


Q ss_pred             ccccCcEEEEEeCCCCcccCCCCcceEEEec-CcccccccCCCcCCC-CCCCCeeecCceEEEcCCCeEEEEeeeeeeeE
Q psy14311         81 PPICCCSVKLVDVPEMDYFAHEGKGEVCVRG-NNVFLGYFKDPELNS-IDELGWHHTGDVGMWLPTLFFFFIPMLVIMLM  158 (199)
Q Consensus        81 ~p~~~~~~~v~d~~~~~~~~~g~~Gel~i~~-~~~~~gy~~~~~~~~-~~~~g~~~TGD~~~~d~~g~l~~~~r~~~~~~  158 (199)
                      .+.+.....+.+ ..++.++.|+.|++++.+ +....+|+++++.+. .+.+|||+|||+|++|+||+++++        
T Consensus       328 ~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~--------  398 (503)
T d3cw9a1         328 FFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRIL--------  398 (503)
T ss_dssp             TTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE--------
T ss_pred             ccccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeC--------
Confidence            444445544445 888999999999987764 566778888887776 557899999999999999999999        


Q ss_pred             eeecCeEEEecceecccccccccccCCcccccc
Q psy14311        159 YTRIGLRIRSRSRHSLGKRVEGTVHGETKRSQS  191 (199)
Q Consensus       159 ~gR~~~~i~~~g~~v~~~eiE~~l~~~~~~~~~  191 (199)
                       ||.+|+||++|++|+|.+||++|.+||.|.++
T Consensus       399 -GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~  430 (503)
T d3cw9a1         399 -GRVDDMIISGGENIHPSEIERVLGTAPGVTEV  430 (503)
T ss_dssp             -EESSCCEEETTEEECHHHHHHHHTTSTTEEEE
T ss_pred             -CCcCCeEEECCEEECHHHHHHHHHhCCCccEE
Confidence             99999999999999999999999999999865