Psyllid ID: psy14362

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MSDSRDDMMETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSACAGK
cccHHHHHHHHHHHHccEEEEEccccccccEEEEccccccHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccEEcccccccccccccccccccccccccEEEcccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcEEccccEEEEEEEccccccccccccEEEEEEccccEEEEEEEEEEEEEccccccccccccEEEEcEEEEEEEEcHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcc
cccccccccHEEEcccEEEEEccccccccccEEEccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHcccEEEEEEccccccccccccccccccccEEEEEccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEEEEEEcccccHEEEcccEEEEEEEEEEEEEEcHHHHHHcHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcc
MSDSRDDMMETEINNHAIVVTndvahnnkdrqkIFGDQLKVSIMHAggrefdrgqkidKRYIFIAAEGEHKASRALREASEVISDSPAALQLRylqipgvpkgtfqpylgrinkVPIFIGlladnadpsdagicgSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFSSlfsadnadpsdagicgSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGrlvsggakgpgiFFILpcmdsyvcvdlrtrtydvppqevltkdsvtvSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLrnvmgtrplhEILSEREAISNTMQLALDEAtedwgikverveikdvrlPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSACAGK
MSDSRDDMMETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHaggrefdrgqkIDKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTydvppqevltkdsvtvsVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATedwgikverveikdvrlpVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSACAGK
MSDSRDDMMETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQramaaeaeatrearaKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSACAGK
**************NHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAE*******************PAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQ******************************************ALQLRYLQFQYSKF******
**********TEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGL*********************WFLVGITLPFS*****************************AGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQY*********
*********ETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRA***********RAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSACAGK
*******MMETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPY*******************SDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATR***AKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSACA**
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MSDSRDDMMETEINNHAIVVTNDVAHNNKDRQKIFGDQLKVSIMHAGGREFDRGQKIDKRYIFIAAEGEHKASRALREASEVISDSPAALQLRYLQIPGVPKGTFQPYLGRINKVPIFIGLLADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKPYLNRINKVFSSLFSADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQFQYSKFSACAGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
Q16TM5297 Band 7 protein AAEL010189 N/A N/A 0.559 0.794 0.834 1e-103
Q7PPU9280 Band 7 protein AGAP004871 yes N/A 0.571 0.860 0.821 1e-103
Q9VZA4505 Band 7 protein CG42540 OS no N/A 0.559 0.467 0.843 1e-101
Q19958375 Stomatin-2 OS=Caenorhabdi yes N/A 0.537 0.605 0.766 1e-91
Q27433 481 Mechanosensory protein 2 no N/A 0.537 0.471 0.740 9e-88
P54116284 Erythrocyte band 7 integr yes N/A 0.545 0.809 0.695 1e-84
P27105288 Erythrocyte band 7 integr yes N/A 0.537 0.788 0.691 3e-83
Q22165281 Stomatin-4 OS=Caenorhabdi no N/A 0.535 0.804 0.699 8e-82
Q19200330 Stomatin-1 OS=Caenorhabdi no N/A 0.540 0.690 0.624 2e-75
Q21190285 Protein unc-1 OS=Caenorha no N/A 0.535 0.792 0.654 1e-74
>sp|Q16TM5|BND7A_AEDAE Band 7 protein AAEL010189 OS=Aedes aegypti GN=AAEL010189 PE=3 SV=1 Back     alignment and function desciption
 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/236 (83%), Positives = 211/236 (89%)

Query: 175 ADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGGAKG 234
           A++    +A  CG ++  LSW LV +T+PFSL VCFKVVQEYERAVIFRLGRLV GGAKG
Sbjct: 23  AEDDSNGEASTCGRILIFLSWVLVVLTMPFSLLVCFKVVQEYERAVIFRLGRLVQGGAKG 82

Query: 235 PGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVAN 294
           PGIFFILPC+D+Y  VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNAT+S+ANV N
Sbjct: 83  PGIFFILPCIDAYARVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATVSIANVEN 142

Query: 295 AHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVR 354
           AHHST+LLAQTTLRN MGTR LHEILSER  IS +MQL+LDEATE WGIKVERVEIKDVR
Sbjct: 143 AHHSTRLLAQTTLRNTMGTRHLHEILSERMTISGSMQLSLDEATEAWGIKVERVEIKDVR 202

Query: 355 LPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQ 410
           LPVQLQRAMAAEAEA REARAKVIAAEGE KASRALREASEVI DSPAALQLRYLQ
Sbjct: 203 LPVQLQRAMAAEAEAAREARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQ 258

Aedes aegypti (taxid: 7159)
>sp|Q7PPU9|BND7A_ANOGA Band 7 protein AGAP004871 OS=Anopheles gambiae GN=AGAP004871 PE=3 SV=3 Back     alignment and function description
>sp|Q9VZA4|BND7A_DROME Band 7 protein CG42540 OS=Drosophila melanogaster GN=CG42540 PE=2 SV=2 Back     alignment and function description
>sp|Q19958|STO2_CAEEL Stomatin-2 OS=Caenorhabditis elegans GN=sto-2 PE=2 SV=4 Back     alignment and function description
>sp|Q27433|MEC2_CAEEL Mechanosensory protein 2 OS=Caenorhabditis elegans GN=mec-2 PE=1 SV=1 Back     alignment and function description
>sp|P54116|STOM_MOUSE Erythrocyte band 7 integral membrane protein OS=Mus musculus GN=Stom PE=1 SV=3 Back     alignment and function description
>sp|P27105|STOM_HUMAN Erythrocyte band 7 integral membrane protein OS=Homo sapiens GN=STOM PE=1 SV=3 Back     alignment and function description
>sp|Q22165|STO4_CAEEL Stomatin-4 OS=Caenorhabditis elegans GN=sto-4 PE=3 SV=2 Back     alignment and function description
>sp|Q19200|STO1_CAEEL Stomatin-1 OS=Caenorhabditis elegans GN=sto-1 PE=2 SV=2 Back     alignment and function description
>sp|Q21190|UNC1_CAEEL Protein unc-1 OS=Caenorhabditis elegans GN=unc-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
328712537316 PREDICTED: band 7 protein AAEL010189-lik 0.566 0.756 0.857 1e-107
345479092300 PREDICTED: band 7 protein AGAP004871-lik 0.554 0.78 0.858 1e-104
345479090273 PREDICTED: band 7 protein AGAP004871-lik 0.554 0.857 0.858 1e-104
383854778403 PREDICTED: band 7 protein AGAP004871-lik 0.563 0.590 0.831 1e-104
322794496270 hypothetical protein SINV_02805 [Solenop 0.561 0.877 0.839 1e-104
307195624270 Band 7 protein AGAP004871 [Harpegnathos 0.563 0.881 0.836 1e-104
307184400267 Band 7 protein AAEL010189 [Camponotus fl 0.556 0.880 0.842 1e-103
340724048297 PREDICTED: band 7 protein AAEL010189-lik 0.585 0.831 0.793 1e-102
357622664 674 hypothetical protein KGM_18655 [Danaus p 0.590 0.369 0.808 1e-102
170068741337 conserved hypothetical protein [Culex qu 0.571 0.715 0.825 1e-101
>gi|328712537|ref|XP_001943813.2| PREDICTED: band 7 protein AAEL010189-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/239 (85%), Positives = 221/239 (92%)

Query: 172 LFSADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVSGG 231
           +  A+++ P+D G+CG  MTG +W LV +T PFSLFVCFKVVQEYERAVIFRLGRLVSGG
Sbjct: 28  IIGAEDSAPTDPGVCGKFMTGCAWALVVVTFPFSLFVCFKVVQEYERAVIFRLGRLVSGG 87

Query: 232 AKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVAN 291
           AKGPGIFFILPC+D+Y  VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRV NATISVAN
Sbjct: 88  AKGPGIFFILPCIDNYARVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVCNATISVAN 147

Query: 292 VANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIK 351
           VANAH ST+LLAQTTLRNV+GTRPLHEILS+R+AIS TMQ++LDEATE WGIKVERVEIK
Sbjct: 148 VANAHQSTRLLAQTTLRNVLGTRPLHEILSDRDAISKTMQVSLDEATESWGIKVERVEIK 207

Query: 352 DVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQ 410
           DVRLPVQLQRAMAAEAEA REARAKVIAAEGE KASRALREASEVISDSPAALQLRYLQ
Sbjct: 208 DVRLPVQLQRAMAAEAEAAREARAKVIAAEGEQKASRALREASEVISDSPAALQLRYLQ 266

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345479092|ref|XP_003423876.1| PREDICTED: band 7 protein AGAP004871-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345479090|ref|XP_001601547.2| PREDICTED: band 7 protein AGAP004871-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383854778|ref|XP_003702897.1| PREDICTED: band 7 protein AGAP004871-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322794496|gb|EFZ17549.1| hypothetical protein SINV_02805 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307195624|gb|EFN77466.1| Band 7 protein AGAP004871 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307184400|gb|EFN70809.1| Band 7 protein AAEL010189 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340724048|ref|XP_003400397.1| PREDICTED: band 7 protein AAEL010189-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|357622664|gb|EHJ74090.1| hypothetical protein KGM_18655 [Danaus plexippus] Back     alignment and taxonomy information
>gi|170068741|ref|XP_001868981.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167864738|gb|EDS28121.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
UNIPROTKB|Q7PPU9280 AGAP004871 "Band 7 protein AGA 0.571 0.860 0.763 1e-91
UNIPROTKB|Q16TM5297 AAEL010189 "Band 7 protein AAE 0.559 0.794 0.775 1.3e-91
FB|FBgn0260657505 CG42540 [Drosophila melanogast 0.559 0.467 0.783 1.9e-90
WB|WBGene00006064375 sto-2 [Caenorhabditis elegans 0.537 0.605 0.700 2.8e-82
WB|WBGene00003166 481 mec-2 [Caenorhabditis elegans 0.545 0.478 0.669 3e-78
ZFIN|ZDB-GENE-980526-486294 stom "stomatin" [Danio rerio ( 0.554 0.795 0.646 1.3e-77
UNIPROTKB|F1N2R1284 STOM "Uncharacterized protein" 0.547 0.813 0.629 9e-77
RGD|1305109284 Stom "stomatin" [Rattus norveg 0.554 0.823 0.625 3.9e-76
MGI|MGI:95403284 Stom "stomatin" [Mus musculus 0.545 0.809 0.634 5e-76
UNIPROTKB|E1BTV1281 STOM "Uncharacterized protein" 0.552 0.829 0.615 6.3e-76
UNIPROTKB|Q7PPU9 AGAP004871 "Band 7 protein AGAP004871" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 184/241 (76%), Positives = 199/241 (82%)

Query:   170 SSLFSADNADPSDAGICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLGRLVS 229
             S L  A++    +A  CG ++  LSW LV +T+PFSL VCFKVVQEYERAVIFRLGRL+ 
Sbjct:     4 SLLLYAEDETNGEASTCGRILIFLSWVLVVLTMPFSLLVCFKVVQEYERAVIFRLGRLMQ 63

Query:   230 GGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISV 289
             GGAKGPGIFFILPC+D+Y  VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNAT+S+
Sbjct:    64 GGAKGPGIFFILPCIDAYARVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATVSI 123

Query:   290 ANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVE 349
             ANV NAHHST+LLAQTTLRN MGTR LHEILSER  IS +MQL+LDEATE WGIKVERVE
Sbjct:   124 ANVENAHHSTRLLAQTTLRNTMGTRHLHEILSERMTISGSMQLSLDEATEAWGIKVERVE 183

Query:   350 IKDVRLPVQLQXXXXXXXXXXXXXXXKVIAAEGEHKASRALREASEVISDSPAALQLRYL 409
             IKDVRLPVQLQ               KVIAAEGE KASRALREASEVI DSPAALQLRYL
Sbjct:   184 IKDVRLPVQLQRAMAAEAEAAREARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYL 243

Query:   410 Q 410
             Q
Sbjct:   244 Q 244
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q16TM5 AAEL010189 "Band 7 protein AAEL010189" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0260657 CG42540 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00006064 sto-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00003166 mec-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-486 stom "stomatin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N2R1 STOM "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1305109 Stom "stomatin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:95403 Stom "stomatin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTV1 STOM "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q19958STO2_CAEELNo assigned EC number0.76650.53790.6053yesN/A
P54116STOM_MOUSENo assigned EC number0.69560.54500.8098yesN/A
O28852Y1420_ARCFUNo assigned EC number0.53180.51180.8674yesN/A
O59180Y1511_PYRHONo assigned EC number0.55440.47390.7518yesN/A
P27105STOM_HUMANNo assigned EC number0.69160.53790.7881yesN/A
Q7PPU9BND7A_ANOGANo assigned EC number0.82150.57100.8607yesN/A
Q9V0Y1Y658_PYRABNo assigned EC number0.55940.47390.7462yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 1e-93
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 7e-50
smart00244160 smart00244, PHB, prohibitin homologues 2e-47
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 3e-37
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 2e-35
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 2e-32
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 5e-20
TIGR01933261 TIGR01933, hflK, HflK protein 2e-13
TIGR01932317 TIGR01932, hflC, HflC protein 5e-11
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 1e-09
cd03401196 cd03401, Band_7_prohibitin, Band_7_prohibitin 3e-09
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 1e-06
cd03400124 cd03400, Band_7_1, A subgroup of the band 7 domain 1e-06
PRK10930 419 PRK10930, PRK10930, FtsH protease regulator HflK; 3e-06
COG2268 548 COG2268, COG2268, Uncharacterized protein conserve 3e-05
cd03399128 cd03399, Band_7_flotillin, Band_7_flotillin: a sub 5e-05
PRK11029334 PRK11029, PRK11029, FtsH protease regulator HflC; 5e-04
cd03402219 cd03402, Band_7_2, A subgroup of the band 7 domain 0.002
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information 
 Score =  280 bits (718), Expect = 1e-93
 Identities = 106/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)

Query: 213 VQEYERAVIFRLGRLVSGGAKGPGIFFILPCMDSYVC-VDLRTRTYDVPPQEVLTKDSVT 271
           V +YER V+ RLG+       GPG+ FI+P +D     VDLR +  DVPPQEV+TKD+VT
Sbjct: 1   VPQYERGVVERLGKYH--RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVT 58

Query: 272 VSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSEREAISNTMQ 331
           V VDAV+YYRV +   +V  V +  ++   LAQTTLR+V+G   L E+LSERE I+  + 
Sbjct: 59  VRVDAVLYYRVVDPVKAVYGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELV 118

Query: 332 LALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALR 391
             LDEAT+ WG+KVERVEIKD+ LP ++Q AMA +AEA RE RAK+I AEGE +A+  L 
Sbjct: 119 EILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLA 178

Query: 392 EASEVISDSPAALQLRYLQ 410
           EA++  + +PAALQLR L+
Sbjct: 179 EAAKQAAINPAALQLRELE 197

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|233644 TIGR01932, hflC, HflC protein Back     alignment and domain information
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|236799 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional Back     alignment and domain information
>gnl|CDD|239496 cd03402, Band_7_2, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
KOG2621|consensus288 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 100.0
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.97
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.96
KOG3090|consensus290 99.96
KOG2620|consensus301 99.96
KOG2621|consensus288 99.9
KOG3083|consensus271 99.86
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.84
KOG2962|consensus322 99.78
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.74
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.69
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.69
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.6
KOG2668|consensus 428 99.6
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 99.51
KOG2620|consensus301 99.47
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.41
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 99.26
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 99.21
PRK11029334 FtsH protease regulator HflC; Provisional 99.03
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 98.9
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 98.88
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 98.86
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 98.74
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 98.6
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 98.56
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 98.46
PRK10930419 FtsH protease regulator HflK; Provisional 98.32
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 98.12
PTZ00491 850 major vault protein; Provisional 97.96
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 97.27
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 97.23
KOG3090|consensus290 96.94
KOG3083|consensus271 96.71
PF1222142 HflK_N: Bacterial membrane protein N terminal; Int 96.51
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 96.45
COG1580159 FliL Flagellar basal body-associated protein [Cell 96.24
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 94.94
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 94.67
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 94.17
PRK06654181 fliL flagellar basal body-associated protein FliL; 92.69
PRK13665316 hypothetical protein; Provisional 92.03
PRK12785166 fliL flagellar basal body-associated protein FliL; 91.65
PRK07718142 fliL flagellar basal body-associated protein FliL; 89.73
PRK07021162 fliL flagellar basal body-associated protein FliL; 86.66
PRK08455182 fliL flagellar basal body-associated protein FliL; 86.19
PRK05696170 fliL flagellar basal body-associated protein FliL; 84.85
PF0374899 FliL: Flagellar basal body-associated protein FliL 82.02
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-45  Score=374.48  Aligned_cols=266  Identities=20%  Similarity=0.246  Sum_probs=214.0

Q ss_pred             cCCCchhhccHHHHHHHHhhhcccCCCCCCCCCC-Cc--chhhHHHHHHHHHHHHHHHHHHhceeEEecCCeEEEEEECC
Q psy14362        149 TLPFSLFVCFKPYLNRINKVFSSLFSADNADPSD-AG--ICGSLMTGLSWFLVGITLPFSLFVCFKVVQEYERAVIFRLG  225 (422)
Q Consensus       149 ~~P~dL~~~~r~~~~~L~~~fg~~~~~~~~~~~~-~~--~~g~~~~~~~~~v~lv~~~~~~~~~~~~V~~ge~gVv~~fG  225 (422)
                      .+||||+++|+++.++++++||++++++++++++ .+  .++..+   +.+++++++++|+++|||+|+++|+|||++||
T Consensus        36 ~~ppdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~ii~~~~v~i~l~sg~yiV~e~E~gVV~rFG  112 (419)
T PRK10930         36 QGPPDLDDIFRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRV---VGIAAAAVVIIWAASGFYTIKEAERGVVTRFG  112 (419)
T ss_pred             CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccccccchH---HHHHHHHHHHHHHHheEEEECCCeEEEEEECC
Confidence            4699999999999999998654332211111111 00  111111   12233344566889999999999999999999


Q ss_pred             eeecCcccccceEEEccccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHH
Q psy14362        226 RLVSGGAKGPGIFFILPCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQT  305 (422)
Q Consensus       226 k~~~~~v~~pGlh~~~P~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~  305 (422)
                      |+.  .+++||+||++||+++|..+|++.+......+.|+|+|++.|+|+++|+|||.||.+|+|++.+++..+++++++
T Consensus       113 k~~--~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf~v~~~~~~L~~~~~S  190 (419)
T PRK10930        113 KFS--HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSPDDSLRQATDS  190 (419)
T ss_pred             cCc--ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHHhccCHHHHHHHHHHH
Confidence            998  589999999999999999999988766656678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccchhHHHh-hHHHHHHHHHHHHHHHhhcC--CeEEEEEEeeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14362        306 TLRNVMGTRPLHEILS-EREAISNTMQLALDEATEDW--GIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEG  382 (422)
Q Consensus       306 alR~vv~~~tld~ll~-~R~~i~~~i~~~L~~~l~~~--GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~  382 (422)
                      +||+++|+++++++++ +|++|..++++.+++.++.|  ||+|.+|+|++++||+++++||++...|++++++.+.+|++
T Consensus       191 AlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAea  270 (419)
T PRK10930        191 ALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEA  270 (419)
T ss_pred             HHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 59999999999999999987  99999999999999999999999888877665555555554


Q ss_pred             HHHH------------------------HHHHHHHHH------HHhcCHHHHHHH-HHHHHHhhhhhh
Q psy14362        383 EHKA------------------------SRALREASE------VISDSPAALQLR-YLQFQYSKFSAC  419 (422)
Q Consensus       383 ea~a------------------------a~~~aeAa~------~l~~~p~~~~lr-~lE~~~~~l~~~  419 (422)
                      ++..                        ++++++|++      .+..+|++++.| |||+|.++|+.+
T Consensus       271 yan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~RlYletme~vl~~~  338 (419)
T PRK10930        271 YTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKVLGHT  338 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHccC
Confidence            4321                        233334432      245689999766 999999999864

>KOG2621|consensus Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG3090|consensus Back     alignment and domain information
>KOG2620|consensus Back     alignment and domain information
>KOG2621|consensus Back     alignment and domain information
>KOG3083|consensus Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2962|consensus Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2668|consensus Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>KOG2620|consensus Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG3090|consensus Back     alignment and domain information
>KOG3083|consensus Back     alignment and domain information
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX [] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
4fvf_A128 Spfh Domain Of Mouse Stomatin (Crystal Form 1) Leng 1e-45
4fvj_A133 Spfh Domain Of The Mouse Stomatin (Crystal Form 2) 1e-44
4fvg_A133 Spfh Domain Of Mouse Stomatin (Crystal Form 3) Leng 3e-44
3bk6_A188 Crystal Structure Of A Core Domain Of Stomatin From 8e-35
2rpb_A113 The Solution Structure Of Membrane Protein Length = 4e-16
>pdb|4FVF|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 1) Length = 128 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (457), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 103/119 (86%)
Query: 242 PCMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKL 301
           PC DS + VD+RT ++D+PPQEVLTKDSVT+SVD VVYYRV NAT++VAN+ NA  +T+L
Sbjct: 1   PCTDSLIKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRL 60
Query: 302 LAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQ 360
           LAQTTLRN +GT+ L +ILS+RE I++ MQ  LD+AT+DWGIKVERVEIKDV+LPVQLQ
Sbjct: 61  LAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQ 119
>pdb|4FVJ|A Chain A, Spfh Domain Of The Mouse Stomatin (Crystal Form 2) Length = 133 Back     alignment and structure
>pdb|4FVG|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 3) Length = 133 Back     alignment and structure
>pdb|3BK6|A Chain A, Crystal Structure Of A Core Domain Of Stomatin From Pyrococcus Horikoshii Length = 188 Back     alignment and structure
>pdb|2RPB|A Chain A, The Solution Structure Of Membrane Protein Length = 113 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 1e-100
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 1e-11
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 5e-74
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 1e-48
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 1e-36
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
 Score =  295 bits (757), Expect = e-100
 Identities = 88/166 (53%), Positives = 118/166 (71%)

Query: 245 DSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQ 304
           +  V VDLRT+  DVP QE +TKD+V V V+AVVY+RV +   +V  V N   +T  ++Q
Sbjct: 4   EKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQ 63

Query: 305 TTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMA 364
           TTLR+V+G   L E+LSER+ ++  +Q  +DEAT+ WGIKV  VEIKDV LP  +Q+AMA
Sbjct: 64  TTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMA 123

Query: 365 AEAEATREARAKVIAAEGEHKASRALREASEVISDSPAALQLRYLQ 410
            +AEA RE RA++  AE E +A+  LREA+E+IS+ P ALQLR LQ
Sbjct: 124 RQAEAERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQ 169
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.98
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.94
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.82
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.81
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.75
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 98.81
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 98.67
2zuo_A 861 MVP, major vault protein; repeat domains, protein- 98.04
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 97.14
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.98  E-value=4.8e-32  Score=248.40  Aligned_cols=176  Identities=50%  Similarity=0.696  Sum_probs=165.8

Q ss_pred             ccceEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHHhhcChHHHHHHHHHHHHHHHhcccchhHHHhh
Q psy14362        243 CMDSYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVANVANAHHSTKLLAQTTLRNVMGTRPLHEILSE  322 (422)
Q Consensus       243 ~i~~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~~~~~~~~~l~~~~~~alR~vv~~~tld~ll~~  322 (422)
                      |++++..+|+|.++++++++.++|+|+++|+|+++++|||.||.++++++.|+...+.+.+++++|+++|++++++++++
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~   81 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSE   81 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhh
Confidence            57899999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHH
Q psy14362        323 REAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEATREARAKVIAAEGEHKASRALREASEVISDSPA  402 (422)
Q Consensus       323 R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~Ae~ea~A~i~~Ae~ea~aa~~~aeAa~~l~~~p~  402 (422)
                      |++|+..+++.+++.+++|||.|.+|.|++++||+++.++|.++++|+++++|.+.+|+|++++++..++|++.++.+|.
T Consensus        82 R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a~~~~~~~~~  161 (188)
T 3bk6_A           82 RDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPM  161 (188)
T ss_dssp             HHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q psy14362        403 ALQLRYLQFQYSKFSA  418 (422)
Q Consensus       403 ~~~lr~lE~~~~~l~~  418 (422)
                      ++++|+||+|.+.++.
T Consensus       162 ~l~lr~le~~~~ia~~  177 (188)
T 3bk6_A          162 ALQLRTLQTISDVAGD  177 (188)
T ss_dssp             HHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999988764
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 8e-33
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (297), Expect = 8e-33
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 250 VDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVAN---------VANAHHSTK 300
           + L   T     ++V T + V ++V  V   ++      +A          V +  +   
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 301 LLAQTTLRNVMGTRPLHEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQ 360
              +  LR+++GT  + +I  +R+  +  ++          GI++    IKDV   V   
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 361 RAMAAEAEATREA 373
            ++     +   +
Sbjct: 130 SSLGKTQTSGPSS 142

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.77
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 97.83
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.2e-20  Score=161.42  Aligned_cols=124  Identities=19%  Similarity=0.254  Sum_probs=114.6

Q ss_pred             eEEEEEeeeEEeecCCCccccCCCceEEEEEEEEEEecchHHHHH---------hhcChHHHHHHHHHHHHHHHhcccch
Q psy14362        246 SYVCVDLRTRTYDVPPQEVLTKDSVTVSVDAVVYYRVSNATISVA---------NVANAHHSTKLLAQTTLRNVMGTRPL  316 (422)
Q Consensus       246 ~v~~v~~r~~~~~~~~~~~~T~D~~~V~V~~~V~yrI~d~~~~~~---------~~~~~~~~l~~~~~~alR~vv~~~tl  316 (422)
                      ++.++|++.++++++.+.++|+|+++|+|+++++|||.||.++++         ...+++..++..+++++|+++|++++
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             ceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            456899999999999989999999999999999999998887542         34678888999999999999999999


Q ss_pred             hHHHhhHHHHHHHHHHHHHHHhhcCCeEEEEEEeeccCCcHHHHHHHHHHHHH
Q psy14362        317 HEILSEREAISNTMQLALDEATEDWGIKVERVEIKDVRLPVQLQRAMAAEAEA  369 (422)
Q Consensus       317 d~ll~~R~~i~~~i~~~L~~~l~~~GI~V~~V~I~~i~~P~~v~~Ai~~~~~A  369 (422)
                      ++++++|++|.+.+++.+++.+++|||+|.+|.|+++++|+++.++|.+++.|
T Consensus        86 ~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999877665
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure