Psyllid ID: psy14379

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MQNIHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHccccccc
Coil and Loop (DISEMBL)
mqnihikhpiipkccLEMQDVLTIIRSFHVvgeeannldlspdsgindlqnlspeeQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV
Flexible Loop (DISEMBL)
mqnihikhpiipkcCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLtqsiknvketqv
Low Complexity Region (SEG)
MQNIHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV
Disordered region (IsUnstruct)
***IHIKHPIIPKCCLEMQDVLTIIRSFHVVGEE****************************************INTLKHVLASKTKTAQDLKKKLGFTVWKEFNDD*************
Disordered Region (DISOPRED)
*****IKHPIIPKCCLEMQDVLTIIRSFHV***********************************QELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSI*N******
Disordered Region (DISEMBL)
MQNIHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLS***********TQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV
Disordered Region (DISPRO)
*QNIHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEA*NLD**PDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNV*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQNIHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
P55326	195	Uncharacterized protein F	yes	N/A	0.433	0.266	0.480	1e-06
Q96J77	140	Tumor protein D55 OS=Homo	no	N/A	0.508	0.435	0.369	0.0008

>sp|P55326|YZG1_CAEEL Uncharacterized protein F13E6.1 OS=Caenorhabditis elegans GN=F13E6.1 PE=3 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 38/52 (73%)

Query: 67  ELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKET 118
           EL + EEEI+TLK VL+++ K A +LK+KLG T + E + D+ +S+K V +T
Sbjct: 67  ELDKTEEEISTLKQVLSARQKHAAELKRKLGLTPFSELSQDINRSLKTVTDT 118

Caenorhabditis elegans (taxid: 6239)

>sp|Q96J77|TPD55_HUMAN Tumor protein D55 OS=Homo sapiens GN=TPD52L3 PE=1 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 47  NDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFND 106
           ++L++L+  EQ + K +    L ++E EI TL+HVLA+K +   +LK+KLG T       
Sbjct: 19  SELEDLTEPEQRELKTK----LTKLEAEIVTLRHVLAAKERRCGELKRKLGLTALVGLRQ 74

Query: 107 DLTQS 111
           +L++S
Sbjct: 75  NLSKS 79

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
121543927	211	hypothetical protein [Maconellicoccus hi	0.666	0.379	0.662	8e-25
307211897	364	Tumor protein D54 [Harpegnathos saltator	0.716	0.236	0.616	2e-22
332025983	357	Tumor protein D54 [Acromyrmex echinatior	0.716	0.240	0.616	3e-22
307179237	278	Tumor protein D54 [Camponotus floridanus	0.716	0.309	0.616	3e-22
328782269	368	PREDICTED: hypothetical protein LOC72619	0.733	0.239	0.572	7e-22
383862441	364	PREDICTED: uncharacterized protein LOC10	0.758	0.25	0.562	1e-21
350408584	216	PREDICTED: tumor protein D54-like isofor	0.716	0.398	0.569	7e-21
350408586	367	PREDICTED: tumor protein D54-like isofor	0.716	0.234	0.569	1e-20
340719992	367	PREDICTED: hypothetical protein LOC10064	0.716	0.234	0.569	1e-20
195584601	221	GD11382 [Drosophila simulans] gi|1941941	0.608	0.330	0.643	1e-19

>gi|121543927|gb|ABM55628.1| hypothetical protein [Maconellicoccus hirsutus]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 66/80 (82%)

Query: 41  SPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTV 100
           SPDSGIN+LQ LSPEEQEKQ+  W QEL  +E EI+TL+HVL SKT+TA +LK+KLG +V
Sbjct: 17  SPDSGINELQGLSPEEQEKQREAWQQELTNIENEIHTLRHVLTSKTRTAHELKRKLGISV 76

Query: 101 WKEFNDDLTQSIKNVKETQV 120
           W+E  DD++Q IKNVKE+ V
Sbjct: 77  WREIQDDMSQGIKNVKESNV 96

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211897|gb|EFN87824.1| Tumor protein D54 [Harpegnathos saltator]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 69/86 (80%)

Query: 35  ANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94
           A +L  + D+  N+L+ LS EEQE+QKAEW+ ELA+VEEEI TL+HVLASK + AQ+LK+
Sbjct: 160 AGSLSPTSDNVANELEGLSLEEQERQKAEWSVELAKVEEEIQTLRHVLASKVRVAQELKR 219

Query: 95  KLGFTVWKEFNDDLTQSIKNVKETQV 120
           KLG +VWKE  DD+ Q +KNVKE+QV
Sbjct: 220 KLGISVWKELTDDVNQGLKNVKESQV 245

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025983|gb|EGI66136.1| Tumor protein D54 [Acromyrmex echinatior]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 35  ANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94
           A +L  S D+  N+LQ LS EEQE+QKAEW+ +LA+VEEEI TL+HVLA+K K +QDLK+
Sbjct: 153 AGSLSPSSDTMANELQGLSLEEQEQQKAEWSAQLAKVEEEIQTLRHVLANKIKVSQDLKR 212

Query: 95  KLGFTVWKEFNDDLTQSIKNVKETQV 120
           KLG +VWKE  DD+ Q +KNVKE+ V
Sbjct: 213 KLGISVWKELTDDVNQGLKNVKESHV 238

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179237|gb|EFN67633.1| Tumor protein D54 [Camponotus floridanus]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 35  ANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94
           A +L  S D+  N+LQ LS EEQE+QKAEW+ +LA+VEEEI TL+HVLA+K K +QDLK+
Sbjct: 74  AGSLSPSSDNIANELQGLSLEEQEQQKAEWSAQLAKVEEEIQTLRHVLANKIKVSQDLKR 133

Query: 95  KLGFTVWKEFNDDLTQSIKNVKETQV 120
           KLG +VWKE  DD+ Q +KNVKE+ V
Sbjct: 134 KLGISVWKELTDDVNQGLKNVKESNV 159

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782269|ref|XP_001121953.2| PREDICTED: hypothetical protein LOC726199 [Apis mellifera] gi|380029249|ref|XP_003698291.1| PREDICTED: uncharacterized protein LOC100870637 [Apis florea]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 71/96 (73%), Gaps = 8/96 (8%)

Query: 27  SFHVVGEEANNLDLSP--DSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLAS 84
           S H  G       +SP  D+ +N+LQ LS EEQ +QKAEW+ ELA+VEEEI TL+HVLA+
Sbjct: 163 SLHSAGY------ISPTSDNVVNELQGLSLEEQNRQKAEWSAELAKVEEEIQTLRHVLAN 216

Query: 85  KTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV 120
           K + +QDLK+KLG +VWKE  DD+ Q +KNVKE+QV
Sbjct: 217 KIRVSQDLKRKLGISVWKEITDDMNQGLKNVKESQV 252

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862441|ref|XP_003706692.1| PREDICTED: uncharacterized protein LOC100878467 [Megachile rotundata]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 74/96 (77%), Gaps = 5/96 (5%)

Query: 30  VVGEEAN-----NLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLAS 84
           V GE+A+      +  S D+ +N+LQ LS EEQ++QKAEW+ ELA+VEEEI TL+HVLA+
Sbjct: 150 VKGEDASLHSGGYISPSSDNVVNELQGLSLEEQDRQKAEWSAELAKVEEEIQTLRHVLAN 209

Query: 85  KTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV 120
           K + +Q+LK+KLG +VWKE  DD+ Q +KNVKE+QV
Sbjct: 210 KIRVSQELKRKLGISVWKEITDDMNQGLKNVKESQV 245

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408584|ref|XP_003488451.1| PREDICTED: tumor protein D54-like isoform 1 [Bombus impatiens]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 68/86 (79%)

Query: 35  ANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94
           A+ +  + D+ +N+LQ LS EEQ +QK EW+ ELA+VEEEI TL+HVLA+K + +Q+LK+
Sbjct: 15  ADYISPTSDNVVNELQGLSLEEQNRQKEEWSAELAKVEEEIQTLRHVLANKIRVSQELKR 74

Query: 95  KLGFTVWKEFNDDLTQSIKNVKETQV 120
           KLG +VWKE  DD+ Q +KNVKE+QV
Sbjct: 75  KLGISVWKEITDDMNQGLKNVKESQV 100

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408586|ref|XP_003488452.1| PREDICTED: tumor protein D54-like isoform 2 [Bombus impatiens]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 68/86 (79%)

Query: 35  ANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94
           A+ +  + D+ +N+LQ LS EEQ +QK EW+ ELA+VEEEI TL+HVLA+K + +Q+LK+
Sbjct: 166 ADYISPTSDNVVNELQGLSLEEQNRQKEEWSAELAKVEEEIQTLRHVLANKIRVSQELKR 225

Query: 95  KLGFTVWKEFNDDLTQSIKNVKETQV 120
           KLG +VWKE  DD+ Q +KNVKE+QV
Sbjct: 226 KLGISVWKEITDDMNQGLKNVKESQV 251

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719992|ref|XP_003398428.1| PREDICTED: hypothetical protein LOC100644898 [Bombus terrestris]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 68/86 (79%)

Query: 35  ANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94
           A+ +  + D+ +N+LQ LS EEQ +QK EW+ ELA+VEEEI TL+HVLA+K + +Q+LK+
Sbjct: 166 ADYISPTSDNVVNELQGLSLEEQNRQKEEWSAELAKVEEEIQTLRHVLANKIRVSQELKR 225

Query: 95  KLGFTVWKEFNDDLTQSIKNVKETQV 120
           KLG +VWKE  DD+ Q +KNVKE+QV
Sbjct: 226 KLGISVWKEITDDMNQGLKNVKESQV 251

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195584601|ref|XP_002082093.1| GD11382 [Drosophila simulans] gi|194194102|gb|EDX07678.1| GD11382 [Drosophila simulans]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 60/73 (82%)

Query: 48  DLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDD 107
           +   LS EE+E+++AEW+QELARVEEEINTL+ VLASKT+ A DLK+KLG TVWKE  DD
Sbjct: 40  EFAALSVEEKEQRRAEWSQELARVEEEINTLRTVLASKTRHASDLKRKLGITVWKEVTDD 99

Query: 108 LTQSIKNVKETQV 120
           + Q +KN+KE+ V
Sbjct: 100 MNQGLKNLKESTV 112

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
WB|WBGene00008745	195	F13E6.1 [Caenorhabditis elegan	0.433	0.266	0.480	2e-08
UNIPROTKB|Q5ZHP4	184	TPD52 "Uncharacterized protein	0.541	0.353	0.434	4.2e-08
UNIPROTKB|F1NDS1	239	TPD52 "Uncharacterized protein	0.541	0.271	0.434	8.7e-08
RGD|1306767	226	Tpd52 "tumor protein D52" [Rat	0.541	0.287	0.420	9.1e-08
UNIPROTKB|P55327	224	TPD52 "Tumor protein D52" [Hom	0.575	0.308	0.410	1.5e-07
UNIPROTKB|Q95212	184	TPD52 "Tumor protein D52" [Ory	0.575	0.375	0.397	1.8e-07
MGI|MGI:107749	224	Tpd52 "tumor protein D52" [Mus	0.55	0.294	0.402	2e-07
UNIPROTKB|F1RX99	184	TPD52 "Uncharacterized protein	0.666	0.434	0.341	2.9e-07
UNIPROTKB|Q9I8F4	210	TPD52L1 "Tumor protein D53 hom	0.7	0.4	0.317	5.9e-07
UNIPROTKB|E1BE76	247	TPD52 "Uncharacterized protein	0.666	0.323	0.341	6e-07

WB|WBGene00008745 F13E6.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 25/52 (48%), Positives = 38/52 (73%)

Query:    67 ELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKET 118
             EL + EEEI+TLK VL+++ K A +LK+KLG T + E + D+ +S+K V +T
Sbjct:    67 ELDKTEEEISTLKQVLSARQKHAAELKRKLGLTPFSELSQDINRSLKTVTDT 118

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|Q5ZHP4 TPD52 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query:    50 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLT 109
             + LS EEQ     E  +ELA+VEEEI TL  VLA+K K   ++K+KLG    +E   ++T
Sbjct:    30 ETLSEEEQN----ELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIT 85

Query:   110 QSIKNVKET 118
             +S ++V  T
Sbjct:    86 KSWQDVTST 94

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

UNIPROTKB|F1NDS1 TPD52 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query:    50 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLT 109
             + LS EEQ     E  +ELA+VEEEI TL  VLA+K K   ++K+KLG    +E   ++T
Sbjct:    87 ETLSEEEQN----ELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIT 142

Query:   110 QSIKNVKET 118
             +S ++V  T
Sbjct:   143 KSWQDVTST 151

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

RGD|1306767 Tpd52 "tumor protein D52" [Rattus norvegicus (taxid:10116)]

 Score = 124 (48.7 bits), Expect = 9.1e-08, P = 9.1e-08
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query:    50 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLT 109
             + L+ EEQE    E  +EL +VEEEI TL  VLA+K K   ++K+KLG T  +EF  ++ 
Sbjct:    68 ETLTEEEQE----ELRRELTKVEEEIQTLSQVLAAKEKHLAEIKRKLGITSLQEFKQNIA 123

Query:   110 QSIKNVKET 118
             +  ++V  T
Sbjct:   124 KGWQDVTAT 132

GO:0005509 "calcium ion binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0030183 "B cell differentiation" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

UNIPROTKB|P55327 TPD52 "Tumor protein D52" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 30/73 (41%), Positives = 44/73 (60%)

Query:    46 INDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFN 105
             I+  + LS EEQE    E  +ELA+VEEEI TL  VLA+K K   ++K+KLG    +E  
Sbjct:    65 ISATETLSEEEQE----ELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELK 120

Query:   106 DDLTQSIKNVKET 118
              ++ +  ++V  T
Sbjct:   121 QNIAKGWQDVTAT 133

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030183 "B cell differentiation" evidence=IEP

GO:0005509 "calcium ion binding" evidence=IDA

GO:0046903 "secretion" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

UNIPROTKB|Q95212 TPD52 "Tumor protein D52" [Oryctolagus cuniculus (taxid:9986)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 29/73 (39%), Positives = 44/73 (60%)

Query:    46 INDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFN 105
             I+  + LS EEQE    E  +ELA+VEEEI TL  VLA++ K   ++K+KLG    +E  
Sbjct:    25 ISATETLSEEEQE----ELRRELAKVEEEIQTLSQVLAAREKHLAEIKRKLGINSLQELK 80

Query:   106 DDLTQSIKNVKET 118
              ++ +  ++V  T
Sbjct:    81 QNIAKGWQDVTAT 93

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0030183 "B cell differentiation" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

MGI|MGI:107749 Tpd52 "tumor protein D52" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/67 (40%), Positives = 43/67 (64%)

Query:    53 SPEE-QEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQS 111
             +PE   E+++ E  +EL +VEEEI TL  VLA+K K   +LK+KLG +  +EF  ++ + 
Sbjct:    66 APEALTEEEQEELRRELTKVEEEIQTLSQVLAAKEKHLAELKRKLGISSLQEFKQNIAKG 125

Query:   112 IKNVKET 118
              ++V  T
Sbjct:   126 WQDVTAT 132

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO;IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO;IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|F1RX99 TPD52 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 28/82 (34%), Positives = 45/82 (54%)

Query:    39 DLSPDSGINDLQNLSPEE--QEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 96
             D  P+ G +    +   E   E+++ E  +EL +VEEEI TL  VLA+K K   ++K+KL
Sbjct:    12 DPVPEEGEDVAATIGANEPLSEEEREELRRELTKVEEEIQTLSQVLAAKEKHLAEIKRKL 71

Query:    97 GFTVWKEFNDDLTQSIKNVKET 118
             G    +E   +L +  ++V  T
Sbjct:    72 GINSLQELKQNLAKGWQDVTAT 93

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q9I8F4 TPD52L1 "Tumor protein D53 homolog" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 27/85 (31%), Positives = 51/85 (60%)

Query:    34 EANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLK 93
             E  +L  + +  + D+   S   +E +K E   ELA++E+EI+TL+ VLA+K K   ++K
Sbjct:    10 ETQSLHEADEDMVTDVDFTSMISEE-EKEELKAELAKLEDEISTLRQVLAAKEKHLIEIK 68

Query:    94 KKLGFTVWKEFNDDLTQSIKNVKET 118
             +KLG ++  E   + ++S  +++ T
Sbjct:    69 QKLGMSLMNELKQNFSKSWHDMQTT 93

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005769 "early endosome" evidence=IDA

UNIPROTKB|E1BE76 TPD52 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query:    39 DLSPDSGINDLQNLSPEE--QEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 96
             D  P+ G +    +   E   E+++ E  +ELA+VEEEI TL  VLA+K K   ++K+KL
Sbjct:    52 DPVPEEGEDVAATIGATETLSEEEREELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKL 111

Query:    97 GFTVWKEFNDDLTQSIKNVKET 118
             G    +E   ++ +  ++V  T
Sbjct:   112 GINSLQELKQNIAKGWQDVTAT 133

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	120
pfam04201	162	pfam04201, TPD52, Tumour protein D52 family	3e-10

>gnl|CDD|217962 pfam04201, TPD52, Tumour protein D52 family

 Score = 54.2 bits (130), Expect = 3e-10
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 52  LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQS 111
           LS  E+E+ + E    LA++EEEI+TL+ VLA+K K   +LK+KLG T   E   ++++S
Sbjct: 26  LSEAEKEELRTE----LAKLEEEISTLRQVLAAKEKHLAELKRKLGLTPLSELKQNISKS 81

Query: 112 IKNVKET 118
             +V  T
Sbjct: 82  WHDVTAT 88

The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family. These proteins have an amino terminal coiled-coil that allows members to form homo- and heterodimers with each other. Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
PF04201	162	TPD52: Tumour protein D52 family; InterPro: IPR007	100.0
KOG4010|consensus	208		99.97
PF11221	144	Med21: Subunit 21 of Mediator complex; InterPro: I	85.82
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	83.33
PF14389	88	Lzipper-MIP1: Leucine-zipper of ternary complex fa	82.64
TIGR02889	435	spore_YpeB germination protein YpeB. Members of th	82.35

>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma

Probab=100.00  E-value=1.3e-34  Score=223.51  Aligned_cols=89  Identities=36%  Similarity=0.517  Sum_probs=81.7

Q ss_pred             hhhhcccccCcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCcchh
Q psy14379         22 LTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVW  101 (120)
Q Consensus        22 ~~~~~~~~e~gEd~~~~~~~~ds~~~~~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLGiT~l  101 (120)
                      |-+.||+|++|||+++...+.      .++|||+|++    |||+||+|||+||+||||||+||+|||+|||||||||+|
T Consensus         2 ll~~~~~~e~~~~~~~~~~~~------~~~LsEeE~e----eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l   71 (162)
T PF04201_consen    2 LLRTDPMTEEGEDTAASISAS------EEGLSEEERE----ELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPL   71 (162)
T ss_pred             CCCCCCCCCCCcchhhhccCC------cccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchH
Confidence            346899999999998755443      4899999986    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhhhhcCC
Q psy14379        102 KEFNDDLTQSIKNVKETQV  120 (120)
Q Consensus       102 ~eLkqniskgw~dVq~Sn~  120 (120)
                      ++|||||+|||||||+|++
T Consensus        72 ~elkqnlskg~~~vq~S~a   90 (162)
T PF04201_consen   72 SELKQNLSKGWHDVQDSNA   90 (162)
T ss_pred             HHHHHHHHHHhHhhhchhH
Confidence            9999999999999999985

Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].

>KOG4010|consensus

Probab=99.97  E-value=9.1e-32  Score=213.93  Aligned_cols=90  Identities=40%  Similarity=0.595  Sum_probs=76.8

Q ss_pred             hhhhhhccccc-CcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCc
Q psy14379         20 DVLTIIRSFHV-VGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGF   98 (120)
Q Consensus        20 ~~~~~~~~~~e-~gEd~~~~~~~~ds~~~~~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLGi   98 (120)
                      +.+-+..|..+ +|++.++       .++.+.+||+||+|    |||.||+||||||.||||||+||+|||+||||||||
T Consensus        15 ~gl~~~~pt~~~~~~~~a~-------s~s~~~~LSe~Eke----elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGl   83 (208)
T KOG4010|consen   15 QGLLLTEPTSEPVGTDVAA-------SASEFEALSEEEKE----ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGL   83 (208)
T ss_pred             ccccccCCCCCCCccchhh-------hhhHHhhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            33445555555 5555553       23448999999987    999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhhcchhhhhcCC
Q psy14379         99 TVWKEFNDDLTQSIKNVKETQV  120 (120)
Q Consensus        99 T~l~eLkqniskgw~dVq~Sn~  120 (120)
                      |+|+||+|||++|||||++|++
T Consensus        84 t~~~EL~qnisksw~d~q~st~  105 (208)
T KOG4010|consen   84 TVLKELKQNISKSWKDVQASTA  105 (208)
T ss_pred             chHHHHHHHHHHHHhhhhhHHH
Confidence            9999999999999999999874

>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=85.82  E-value=2.5  Score=31.38  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy14379         52 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL   96 (120)
Q Consensus        52 LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKL   96 (120)
                      -|+|++.+.-.+|..|+..++.|   |++++..++.....+...|
T Consensus        97 ~see~Q~~~i~~L~~E~~~~~~e---l~~~v~e~e~ll~~v~~~i  138 (144)
T PF11221_consen   97 VSEEEQLKRIKELEEENEEAEEE---LQEAVKEAEELLKQVQELI  138 (144)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            57888887778888888777654   6777888887777776543

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=83.33  E-value=8.4  Score=25.79  Aligned_cols=35  Identities=40%  Similarity=0.511  Sum_probs=24.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14379         47 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKT   88 (120)
Q Consensus        47 ~~~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~   88 (120)
                      .+++.||.+|.+       .-++-++.||.-+++.+..|..+
T Consensus        16 ~dLs~lSv~EL~-------~RIa~L~aEI~R~~~~~~~K~a~   50 (59)
T PF06698_consen   16 EDLSLLSVEELE-------ERIALLEAEIARLEAAIAKKSAS   50 (59)
T ss_pred             CCchhcCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899998754       55666677777777777777544

The function of this family is unknown.

>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1

Probab=82.64  E-value=4.1  Score=28.38  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379         63 EWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG   97 (120)
Q Consensus        63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG   97 (120)
                      +|-.|++-+|.||.-|       |++..+|+++|+
T Consensus        58 eLL~EIA~lE~eV~~L-------E~~v~~L~~~l~   85 (88)
T PF14389_consen   58 ELLEEIALLEAEVAKL-------EQKVLSLYRQLF   85 (88)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            7899999999999988       677777887764

>TIGR02889 spore_YpeB germination protein YpeB

Probab=82.35  E-value=2.1  Score=37.70  Aligned_cols=66  Identities=11%  Similarity=0.228  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCcchhHHHHHHHhhcchhhhh
Q psy14379         50 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKE  117 (120)
Q Consensus        50 ~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLGiT~l~eLkqniskgw~dVq~  117 (120)
                      ..||++|++.. ++|+..-.+++++.+.+.+-+....-++.++.++++ ..+.....++..|+++|..
T Consensus       120 ~~lt~~e~~tL-~~L~~~a~~l~~~L~~~q~~v~~g~l~w~~~~~~~~-~~~~~~~~~~~~~f~~ve~  185 (435)
T TIGR02889       120 KSLSDKEYKTL-TTLYNQAVKLENQLRKVQNIVMQGGVRWGEIRKLYS-GDEAQMPEAILNDFKDVEK  185 (435)
T ss_pred             CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCccchhHhhhhc-cccccCCcchhhHHHHHHH
Confidence            58999999755 689999999999999999999999999999999777 6666777777888887764

Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
1ykh_B	132	RNA polymerase II holoenzyme component SRB7; gene	90.25
1yke_B	151	RNA polymerase II holoenzyme component SRB7; gene	89.24
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	86.42
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	85.46
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	84.6
1use_A	45	VAsp, vasodilator-stimulated phosphoprotein; signa	84.5
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	81.86
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	80.35
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	80.17

>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1

Probab=90.25  E-value=0.5  Score=34.09  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379         52 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG   97 (120)
Q Consensus        52 LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG   97 (120)
                      -|+|++.+.-.+|..|+..++.   .|++++..+++....++..|+
T Consensus        85 ~see~Q~~ri~~L~~E~~~~~~---el~~~v~e~e~ll~~v~~~l~  127 (132)
T 1ykh_B           85 VSAEEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLMRHVDSMIE  127 (132)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3899998888888888877765   477778888888877776543

>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1

Probab=89.24  E-value=0.62  Score=34.53  Aligned_cols=43  Identities=21%  Similarity=0.266  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379         52 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG   97 (120)
Q Consensus        52 LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG   97 (120)
                      .|+|+|.+.-.+|..|+..++.   .|++++..+++-...++..|+
T Consensus        85 ~seeeQ~~ri~~Le~E~~~~~~---el~~~v~eae~ll~~v~~~l~  127 (151)
T 1yke_B           85 VSAEEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLLRHVDSLIE  127 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3899999888888888877765   467778888888877776543

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=86.42  E-value=1.5  Score=35.68  Aligned_cols=36  Identities=14%  Similarity=0.281  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy14379         61 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL   96 (120)
Q Consensus        61 ~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKL   96 (120)
                      +.-|+.-|++++++|..+++-+.+|++....|++.+
T Consensus       304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~  339 (406)
T 4dyl_A          304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQEL  339 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999865

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=85.46  E-value=1.1  Score=28.06  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379         60 QKAEWTQELARVEEEINTLKHVLAS   84 (120)
Q Consensus        60 ~~eELr~EL~KvEeEI~TLrQVLaA   84 (120)
                      +-.+|+.++..+.+|+..|++.|.|
T Consensus        37 ~n~~L~~~i~~L~~e~~~Lk~~lla   61 (61)
T 1t2k_D           37 LNGQLQSEVTLLRNEVAQLKQLLLA   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3457778888888888888877753

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=84.60  E-value=1.9  Score=27.44  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379         58 EKQKAEWTQELARVEEEINTLKHVLA   83 (120)
Q Consensus        58 e~~~eELr~EL~KvEeEI~TLrQVLa   83 (120)
                      +.+-.+|+.+++.++.|+..|++.|.
T Consensus        36 ~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           36 EKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445777777777788887777663

>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A

Probab=84.50  E-value=2.8  Score=26.19  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=22.5

Q ss_pred             CCCHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHH
Q psy14379         51 NLSPEEQEKQK----AEWTQELARVEEEIN-TLKHVLA   83 (120)
Q Consensus        51 ~LseEE~e~~~----eELr~EL~KvEeEI~-TLrQVLa   83 (120)
                      +++..+.++.+    +|.|.||.|+.+||- .+|+-|.
T Consensus         3 ~~~~~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~   40 (45)
T 1use_A            3 SSDYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELR   40 (45)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555444    467899999988875 6776654

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=81.86  E-value=4  Score=27.18  Aligned_cols=47  Identities=19%  Similarity=0.179  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379         51 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG   97 (120)
Q Consensus        51 ~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG   97 (120)
                      ++.+++.+..-.+|...|+=.|+-|..|.+|++.-.+....|+++|.
T Consensus         6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~   52 (78)
T 3efg_A            6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR   52 (78)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556789999999999999999999999999999998764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=80.35  E-value=3.2  Score=28.41  Aligned_cols=29  Identities=14%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379         56 EQEKQKAEWTQELARVEEEINTLKHVLAS   84 (120)
Q Consensus        56 E~e~~~eELr~EL~KvEeEI~TLrQVLaA   84 (120)
                      +.+.+-..|+.++..++.|+.+||++|..
T Consensus        47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~   75 (87)
T 1hjb_A           47 ELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445567888888888888888888875

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=80.17  E-value=4.2  Score=25.61  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379         60 QKAEWTQELARVEEEINTLKHVLAS   84 (120)
Q Consensus        60 ~~eELr~EL~KvEeEI~TLrQVLaA   84 (120)
                      +..+|+.++..+.+|+..|+++|.+
T Consensus        38 ~n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A           38 EKSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456777777778888888777753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d1ab4a_	493	DNA Gyrase A {Escherichia coli [TaxId: 562]}	82.7

>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA Gyrase A
species: Escherichia coli [TaxId: 562]

Probab=82.70  E-value=0.87  Score=36.51  Aligned_cols=41  Identities=20%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379         51 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK   95 (120)
Q Consensus        51 ~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK   95 (120)
                      .||-+|++    +|+.|+.++++||..|...|.++.+.+.-++..
T Consensus       436 ~LT~le~~----kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~E  476 (493)
T d1ab4a_         436 KLTGLEHE----KLLDEYKELLDQIAELLRILGSADRLMEVIREE  476 (493)
T ss_dssp             GGSHHHHH----HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45656765    899999999999999999998877766555443