Psyllid ID: psy1437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MGLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccHHHHHHHHccccccccccccccccccEEEEccccccccccccHHHHHHHHcccccccccccccEEEEcccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccHHHHHHHccccEcccccccccccccEEEccHHHHcccccccHHHHHHHcccccccccEEEHHHcEccHHHccEEEEcccccccEEEcccccccc
Coil and Loop (DISEMBL)
MGLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLlcklppvvrpnnvhrihtsvctrhgeyewqdpksedeivnitfidkdgkrreikgkvgdnVLYLAHRyeipmegaceaslacttchvyvkheyldalppaeekeddlldlapflkdnsrlGCQIILTKELegievtlpkatrnfyvdghtpkph
Flexible Loop (DISEMBL)
MGLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLCklppvvrpnnvHRIHTSVCtrhgeyewqdpksedeivnitfidkdgkrreikgkvgdnVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKelegievtlpkatrnfyvdghtpkph
Low Complexity Region (SEG)
MGLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH
Disordered region (IsUnstruct)
**************VKF***NQDEIAAYYYQAAARFLLETA******NVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPA****DDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYV********
Disordered Region (DISOPRED)
***PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFL***********************************M*********************************************ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVD*******
Disordered Region (DISEMBL)
MGLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH
Disordered Region (DISPRO)
*GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLCKLPPVVR**************H*EYEW**PKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENxxxxxxxxxxxxxxxxxxxxxIQVMFLRNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
P37193	172	Adrenodoxin-like protein,	yes	N/A	0.637	0.860	0.72	2e-62
Q9CPW2	174	Adrenodoxin-like protein,	yes	N/A	0.568	0.758	0.643	5e-49
Q6P4F2	183	Adrenodoxin-like protein,	yes	N/A	0.560	0.710	0.630	6e-48
Q05B51	186	Adrenodoxin-like protein,	yes	N/A	0.560	0.698	0.630	2e-47
Q08C57	195	Adrenodoxin-like protein,	yes	N/A	0.625	0.743	0.575	3e-46
Q5FWQ0	193	Adrenodoxin-like protein,	N/A	N/A	0.547	0.658	0.637	4e-45
Q9AKM6	112	2Fe-2S ferredoxin OS=Rick	yes	N/A	0.456	0.946	0.509	4e-26
Q9AKH1	112	2Fe-2S ferredoxin OS=Rick	yes	N/A	0.456	0.946	0.509	7e-26
Q4UKL2	112	2Fe-2S ferredoxin OS=Rick	yes	N/A	0.456	0.946	0.5	1e-25
Q9ZDW6	112	2Fe-2S ferredoxin OS=Rick	yes	N/A	0.456	0.946	0.509	2e-25

>sp|P37193|ADXH_DROME Adrenodoxin-like protein, mitochondrial OS=Drosophila melanogaster GN=Fdxh PE=2 SV=3

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 129/150 (86%), Gaps = 2/150 (1%)

Query: 83  PPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 142
           P    P+N   +HT++  RHGE+EWQDPKS DEIVNIT++DKDGKR +++GKVGDNVLYL
Sbjct: 25  PAFYTPHNA--LHTTIPRRHGEFEWQDPKSTDEIVNITYVDKDGKRTKVQGKVGDNVLYL 82

Query: 143 AHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202
           AHR+ I MEGACEASLACTTCHVYV+H+YL  L  AEE+EDDLLD+APFL++NSRLGCQI
Sbjct: 83  AHRHGIEMEGACEASLACTTCHVYVQHDYLQKLKEAEEQEDDLLDMAPFLRENSRLGCQI 142

Query: 203 ILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           +L K +EG+E+ LPKATRNFYVDGH PKPH
Sbjct: 143 LLDKSMEGMELELPKATRNFYVDGHKPKPH 172

Drosophila melanogaster (taxid: 7227)

>sp|Q9CPW2|ADXL_MOUSE Adrenodoxin-like protein, mitochondrial OS=Mus musculus GN=Fdx1l PE=2 SV=1

 Score =  194 bits (493), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 105/132 (79%)

Query: 101 RHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLAC 160
           R GE     P+   ++VN+ F+D+ GKR  ++GKVGDNVLYLA R+ + +EGACEASLAC
Sbjct: 43  RAGEEAADSPELPRDVVNVVFVDRSGKRIPVRGKVGDNVLYLAQRHGVDLEGACEASLAC 102

Query: 161 TTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
           +TCHVYV   +LD LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG+E  LPK TR
Sbjct: 103 STCHVYVSEAHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGVEFALPKITR 162

Query: 221 NFYVDGHTPKPH 232
           NFYVDGH PKPH
Sbjct: 163 NFYVDGHIPKPH 174

Mus musculus (taxid: 10090)

>sp|Q6P4F2|ADXL_HUMAN Adrenodoxin-like protein, mitochondrial OS=Homo sapiens GN=FDX1L PE=1 SV=1

 Score =  190 bits (483), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 105/130 (80%)

Query: 103 GEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTT 162
           GE +   P+   ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ + +EGACEASLAC+T
Sbjct: 54  GEEDAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACST 113

Query: 163 CHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
           CHVYV  ++LD LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TRNF
Sbjct: 114 CHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNF 173

Query: 223 YVDGHTPKPH 232
           YVDGH PKPH
Sbjct: 174 YVDGHVPKPH 183

Homo sapiens (taxid: 9606)

>sp|Q05B51|ADXL_BOVIN Adrenodoxin-like protein, mitochondrial OS=Bos taurus GN=FDX1L PE=2 SV=1

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 105/130 (80%)

Query: 103 GEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTT 162
           GE E   P+   ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ + +EGACEASLAC+T
Sbjct: 57  GEEEAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGLDLEGACEASLACST 116

Query: 163 CHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
           CHVYV  ++LD LPP +E+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TRNF
Sbjct: 117 CHVYVSEDHLDLLPPPDEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNF 176

Query: 223 YVDGHTPKPH 232
           YVDGH PKPH
Sbjct: 177 YVDGHVPKPH 186

Bos taurus (taxid: 9913)

>sp|Q08C57|ADXL_DANRE Adrenodoxin-like protein, mitochondrial OS=Danio rerio GN=fdx1l PE=2 SV=1

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 110/146 (75%), Gaps = 1/146 (0%)

Query: 88  PNNVHRIHTSVC-TRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRY 146
           P+   R    VC +       +D  +++ IVN+ +ID+ G+R  ++ +VGDNVLYLAH++
Sbjct: 50  PSRRLRTSIGVCQSEDSSAPEEDAHAQEHIVNVVYIDRSGRRIPVQARVGDNVLYLAHKH 109

Query: 147 EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTK 206
            I +EGACEASLAC+TCHVYV   + D LP  EE+EDD+LD+AP L++NSRLGCQIILT 
Sbjct: 110 GIDLEGACEASLACSTCHVYVSSGHYDRLPEPEEREDDMLDMAPLLQENSRLGCQIILTP 169

Query: 207 ELEGIEVTLPKATRNFYVDGHTPKPH 232
           EL+G+E+TLPK TRNFYVDGH PKPH
Sbjct: 170 ELDGMELTLPKVTRNFYVDGHVPKPH 195

Danio rerio (taxid: 7955)

>sp|Q5FWQ0|ADXL_XENLA Adrenodoxin-like protein, mitochondrial OS=Xenopus laevis GN=fdx1l PE=2 SV=1

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 100/127 (78%)

Query: 106 EWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHV 165
           E Q  +  +E V + F+D+ G+R  +KGKVG++VL LAHRY I +EGACE+SLAC+TCHV
Sbjct: 67  ENQRAELSEETVEVVFLDRSGQRIPVKGKVGESVLCLAHRYNIELEGACESSLACSTCHV 126

Query: 166 YVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVD 225
           YV  EY   LP  +E+EDD+LD+AP L++NSRLGCQIILTK+L G E TLPK TRNFYVD
Sbjct: 127 YVNTEYFHKLPEPDEREDDMLDMAPLLQENSRLGCQIILTKQLNGAEFTLPKITRNFYVD 186

Query: 226 GHTPKPH 232
           GH PKPH
Sbjct: 187 GHVPKPH 193

Xenopus laevis (taxid: 8355)

>sp|Q9AKM6|FER2_RICMO 2Fe-2S ferredoxin OS=Rickettsia montana GN=fdxB PE=3 SV=1

 Score =  118 bits (295), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 76/106 (71%)

Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 176
           + +TFI  DG+ + ++  +G ++L +AH  ++ +EGACE SLAC TCHV ++ E+ + L 
Sbjct: 5   IKVTFIINDGEEKTVEAPIGLSILEIAHSNDLDLEGACEGSLACATCHVILEEEFYNKLK 64

Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
              E E+D+LDLA  L D SRLGCQIILT+EL+GI+V LP ATRN 
Sbjct: 65  KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNI 110

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia montana (taxid: 33991)

>sp|Q9AKH1|FER2_RICRI 2Fe-2S ferredoxin OS=Rickettsia rickettsii GN=fdxB PE=3 SV=1

 Score =  117 bits (293), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 76/106 (71%)

Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 176
           + +TFI  DG+ + ++  +G ++L +AH  ++ +EGACE SLAC TCHV ++ E+ + L 
Sbjct: 5   IKVTFIINDGEEKTVEAPIGLSILEIAHSNDLDLEGACEGSLACATCHVILEEEFYNKLK 64

Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
              E E+D+LDLA  L D SRLGCQIILT+EL+GI+V LP ATRN 
Sbjct: 65  KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVHLPAATRNI 110

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia rickettsii (taxid: 783)

>sp|Q4UKL2|FER2_RICFE 2Fe-2S ferredoxin OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=fdxB PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 75/106 (70%)

Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 176
           + +TFI  DG+ + ++  +G ++L + H  ++ +EGACE SLAC TCHV ++ E+ + L 
Sbjct: 5   IKVTFIVNDGEEKTVEAPIGLSILEITHSNDLDLEGACEGSLACATCHVILEEEFYNKLK 64

Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
              E E+D+LDLA  L D SRLGCQIILT+EL+GI+V LP ATRN 
Sbjct: 65  KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNI 110

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q9ZDW6|FER2_RICPR 2Fe-2S ferredoxin OS=Rickettsia prowazekii (strain Madrid E) GN=fdxB PE=3 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%)

Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 176
           + +TFI  D + R ++  +G ++L +AH  ++ +EGACE SLAC TCHV ++ E+ + L 
Sbjct: 5   IKVTFIINDEEERTVEAPIGLSILEIAHSNDLDLEGACEGSLACATCHVMLEEEFYNKLK 64

Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
              E E+D+LDLA  L D SRLGCQIILT+EL+GI+V LP ATRN 
Sbjct: 65  KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNI 110

Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
350413787	170	PREDICTED: adrenodoxin-like protein, mit	0.599	0.817	0.812	4e-61
195326271	172	GM24883 [Drosophila sechellia] gi|195588	0.637	0.860	0.726	4e-61
156549524	171	PREDICTED: adrenodoxin-like protein, mit	0.689	0.935	0.699	4e-61
383286760	178	FI20231p1 [Drosophila melanogaster]	0.637	0.831	0.72	8e-61
170036909	165	adrenodoxin [Culex quinquefasciatus] gi|	0.659	0.927	0.711	8e-61
24661503	172	ferredoxin, isoform A [Drosophila melano	0.637	0.860	0.72	9e-61
357620021	166	hypothetical protein KGM_17533 [Danaus p	0.568	0.795	0.795	1e-60
157121125	165	adrenodoxin [Aedes aegypti] gi|108874701	0.659	0.927	0.717	3e-60
195490890	172	GE21252 [Drosophila yakuba] gi|194179431	0.637	0.860	0.72	3e-60
340710056	170	PREDICTED: adrenodoxin-like protein, mit	0.599	0.817	0.805	3e-60

>gi|350413787|ref|XP_003490112.1| PREDICTED: adrenodoxin-like protein, mitochondrial-like [Bombus impatiens]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 124/139 (89%)

Query: 94  IHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGA 153
           IHTS  + HGEYE QDPKSE +IVN+TFIDK GKR  IKGKVGDNVLYLAHRY I MEGA
Sbjct: 32  IHTSEYSFHGEYEMQDPKSEADIVNVTFIDKMGKRIPIKGKVGDNVLYLAHRYGIEMEGA 91

Query: 154 CEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
           CEASLACTTCH+YV H+Y+D LP AEEKE+DLLDLAPFLK+NSRLGCQIILTKEL+GIE+
Sbjct: 92  CEASLACTTCHIYVHHDYMDKLPTAEEKEEDLLDLAPFLKENSRLGCQIILTKELDGIEL 151

Query: 214 TLPKATRNFYVDGHTPKPH 232
            LP+ATRNFYVDGHTP PH
Sbjct: 152 ELPQATRNFYVDGHTPAPH 170

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326271|ref|XP_002029853.1| GM24883 [Drosophila sechellia] gi|195588997|ref|XP_002084243.1| GD12935 [Drosophila simulans] gi|194118796|gb|EDW40839.1| GM24883 [Drosophila sechellia] gi|194196252|gb|EDX09828.1| GD12935 [Drosophila simulans]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/150 (72%), Positives = 130/150 (86%), Gaps = 2/150 (1%)

Query: 83  PPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 142
           P    P+N   +HT++  RHGE+EWQDPKS+DEIVNIT++DKDGKR +I+GKVGDNVLYL
Sbjct: 25  PAFYTPHNA--LHTTIPRRHGEFEWQDPKSKDEIVNITYVDKDGKRTKIQGKVGDNVLYL 82

Query: 143 AHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202
           AHR+ I MEGACEASLACTTCHVYV+H+YL  L  AEE+EDDLLD+APFL++NSRLGCQI
Sbjct: 83  AHRHGIEMEGACEASLACTTCHVYVQHDYLQKLKEAEEQEDDLLDMAPFLRENSRLGCQI 142

Query: 203 ILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           +L K +EG+E+ LPKATRNFYVDGH PKPH
Sbjct: 143 LLDKSMEGMELELPKATRNFYVDGHKPKPH 172

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549524|ref|XP_001600711.1| PREDICTED: adrenodoxin-like protein, mitochondrial-like [Nasonia vitripennis]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 134/163 (82%), Gaps = 3/163 (1%)

Query: 73  MFLRNLL--CKLPPVVRPNNVHR-IHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRR 129
           M LRN L  C    +      ++ IHT+    HGEYE+QDPKSEDE+VN+T+IDK+GK+ 
Sbjct: 9   MLLRNYLPRCGTSKICSSKVCNKQIHTTFSLLHGEYEFQDPKSEDEVVNVTYIDKNGKKI 68

Query: 130 EIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA 189
            ++GKVGDNVLYLAHRY I MEGACEASLACTTCHVY+ ++YLD LP AEEKE+DLLDLA
Sbjct: 69  PVRGKVGDNVLYLAHRYNIEMEGACEASLACTTCHVYIHYDYLDKLPEAEEKEEDLLDLA 128

Query: 190 PFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           PFLK+NSRLGCQIILTKELEG+E+ LP+ TRNFYVDGHTP PH
Sbjct: 129 PFLKENSRLGCQIILTKELEGMELQLPQITRNFYVDGHTPTPH 171

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383286760|gb|AFH01423.1| FI20231p1 [Drosophila melanogaster]

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 129/150 (86%), Gaps = 2/150 (1%)

Query: 83  PPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 142
           P    P+N   +HT++  RHGE+EWQDPKS DEIVNIT++DKDGKR +++GKVGDNVLYL
Sbjct: 31  PAFYTPHNA--LHTTIPRRHGEFEWQDPKSTDEIVNITYVDKDGKRTKVQGKVGDNVLYL 88

Query: 143 AHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202
           AHR+ I MEGACEASLACTTCHVYV+H+YL  L  AEE+EDDLLD+APFL++NSRLGCQI
Sbjct: 89  AHRHGIEMEGACEASLACTTCHVYVQHDYLQKLKEAEEQEDDLLDMAPFLRENSRLGCQI 148

Query: 203 ILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           +L K +EG+E+ LPKATRNFYVDGH PKPH
Sbjct: 149 LLDKSMEGMELELPKATRNFYVDGHKPKPH 178

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036909|ref|XP_001846303.1| adrenodoxin [Culex quinquefasciatus] gi|167879931|gb|EDS43314.1| adrenodoxin [Culex quinquefasciatus]

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 128/156 (82%), Gaps = 3/156 (1%)

Query: 77  NLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVG 136
           N+      ++ P N   IH S    HGEYEWQDPKSEDE+VN+T+IDKDGKR  ++GK+G
Sbjct: 13  NVFSSWQSLLVPRN---IHLSRYLLHGEYEWQDPKSEDEVVNVTYIDKDGKRTPVRGKIG 69

Query: 137 DNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 196
           DN LYLAHRY + MEGACEASLACTTCHVYV  E+ D LPP+EEKEDDLLD+APFLK+NS
Sbjct: 70  DNALYLAHRYGVEMEGACEASLACTTCHVYVLGEHGDKLPPSEEKEDDLLDMAPFLKENS 129

Query: 197 RLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           RLGCQI LTKELEG+E+ LP+ATRNFYVDGH PKPH
Sbjct: 130 RLGCQITLTKELEGLELQLPQATRNFYVDGHKPKPH 165

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24661503|ref|NP_523993.1| ferredoxin, isoform A [Drosophila melanogaster] gi|320545722|ref|NP_001189075.1| ferredoxin, isoform B [Drosophila melanogaster] gi|33860138|sp|P37193.3|ADXH_DROME RecName: Full=Adrenodoxin-like protein, mitochondrial; Flags: Precursor gi|23093810|gb|AAF50293.2| ferredoxin, isoform A [Drosophila melanogaster] gi|318069172|gb|ADV37512.1| ferredoxin, isoform B [Drosophila melanogaster]

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 129/150 (86%), Gaps = 2/150 (1%)

Query: 83  PPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 142
           P    P+N   +HT++  RHGE+EWQDPKS DEIVNIT++DKDGKR +++GKVGDNVLYL
Sbjct: 25  PAFYTPHNA--LHTTIPRRHGEFEWQDPKSTDEIVNITYVDKDGKRTKVQGKVGDNVLYL 82

Query: 143 AHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202
           AHR+ I MEGACEASLACTTCHVYV+H+YL  L  AEE+EDDLLD+APFL++NSRLGCQI
Sbjct: 83  AHRHGIEMEGACEASLACTTCHVYVQHDYLQKLKEAEEQEDDLLDMAPFLRENSRLGCQI 142

Query: 203 ILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           +L K +EG+E+ LPKATRNFYVDGH PKPH
Sbjct: 143 LLDKSMEGMELELPKATRNFYVDGHKPKPH 172

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620021|gb|EHJ72359.1| hypothetical protein KGM_17533 [Danaus plexippus]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 105/132 (79%), Positives = 119/132 (90%)

Query: 101 RHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLAC 160
           RHGEYEWQDPKSEDE+VN+ +IDKDGK+  ++GK+GDNVLYLAHRY I MEGACEASLAC
Sbjct: 35  RHGEYEWQDPKSEDEVVNVVYIDKDGKKTNVRGKIGDNVLYLAHRYGIEMEGACEASLAC 94

Query: 161 TTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
           TTCHVYV  +YLD LP  EEKEDDLLD+APFLK+NSRLGCQI+LTKE+EG+E+ LPKATR
Sbjct: 95  TTCHVYVHEKYLDTLPEPEEKEDDLLDMAPFLKENSRLGCQIVLTKEMEGMELKLPKATR 154

Query: 221 NFYVDGHTPKPH 232
           NFYVDGH P PH
Sbjct: 155 NFYVDGHKPTPH 166

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121125|ref|XP_001659837.1| adrenodoxin [Aedes aegypti] gi|108874701|gb|EAT38926.1| AAEL009228-PA [Aedes aegypti]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 130/156 (83%), Gaps = 3/156 (1%)

Query: 77  NLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVG 136
           NL      ++ P NVH    S    HGEYEWQDPKSEDE+VNIT+IDKDGKR  ++GK+G
Sbjct: 13  NLYSSWHCLLIPRNVH---LSRYLLHGEYEWQDPKSEDEVVNITYIDKDGKRIPVRGKIG 69

Query: 137 DNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 196
           DNVLYLAHR+ + MEGACEASLACTTCHVYV  +Y + LPP+EEKEDDLLD+APFLK+NS
Sbjct: 70  DNVLYLAHRFGVEMEGACEASLACTTCHVYVLGDYGNKLPPSEEKEDDLLDMAPFLKENS 129

Query: 197 RLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           RLGCQI+LTKELEG+E+ LP+ATRNFYVDGH PKPH
Sbjct: 130 RLGCQIVLTKELEGMELQLPQATRNFYVDGHKPKPH 165

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490890|ref|XP_002093330.1| GE21252 [Drosophila yakuba] gi|194179431|gb|EDW93042.1| GE21252 [Drosophila yakuba]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 129/150 (86%), Gaps = 2/150 (1%)

Query: 83  PPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 142
           P    P+N   +HT++  RHGE+EWQDPKS DEIVNIT++DKDGKR +++GKVGDNVLYL
Sbjct: 25  PAFYTPHN--GLHTTIPRRHGEFEWQDPKSPDEIVNITYVDKDGKRTKVQGKVGDNVLYL 82

Query: 143 AHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202
           AHR+ I MEGACEASLACTTCHVYV+H+YL  L  AEE+EDDLLD+APFL++NSRLGCQI
Sbjct: 83  AHRHGIEMEGACEASLACTTCHVYVQHDYLQKLKEAEEQEDDLLDMAPFLRENSRLGCQI 142

Query: 203 ILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           +L K +EG+E+ LPKATRNFYVDGH PKPH
Sbjct: 143 LLDKSMEGMELELPKATRNFYVDGHKPKPH 172

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710056|ref|XP_003393614.1| PREDICTED: adrenodoxin-like protein, mitochondrial-like [Bombus terrestris]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/139 (80%), Positives = 123/139 (88%)

Query: 94  IHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGA 153
           IHTS  + HGEYE QDPKSE +IVN+TFIDK GKR  IKGKVGDNVLYLAHRY I MEGA
Sbjct: 32  IHTSEYSFHGEYEMQDPKSEADIVNVTFIDKMGKRIPIKGKVGDNVLYLAHRYGIEMEGA 91

Query: 154 CEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
           CEASLACTTCH+YV H+Y+D LP AEEKE+DLLDLAPFLK+NSRLGCQIILTKEL+GIE+
Sbjct: 92  CEASLACTTCHIYVHHDYIDKLPTAEEKEEDLLDLAPFLKENSRLGCQIILTKELDGIEL 151

Query: 214 TLPKATRNFYVDGHTPKPH 232
            LP+ATRNFYVDGHTP  H
Sbjct: 152 ELPQATRNFYVDGHTPAAH 170

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0011769	172	Fdxh "Ferredoxin" [Drosophila	0.637	0.860	0.72	3.5e-59
WB|WBGene00013532	169	Y73F8A.27 [Caenorhabditis eleg	0.612	0.840	0.671	1.1e-50
MGI|MGI:1915415	174	Fdx1l "ferredoxin 1-like" [Mus	0.568	0.758	0.643	4.8e-46
RGD|1561264	174	Fdx1l "ferredoxin 1-like" [Rat	0.568	0.758	0.636	2.7e-45
UNIPROTKB|Q6P4F2	183	FDX1L "Adrenodoxin-like protei	0.560	0.710	0.630	5.6e-45
UNIPROTKB|F1S3K4	186	LOC100526209 "Uncharacterized	0.560	0.698	0.638	5.6e-45
UNIPROTKB|K7GN28	183	LOC100526209 "Uncharacterized	0.560	0.710	0.638	5.6e-45
UNIPROTKB|Q05B51	186	FDX1L "Adrenodoxin-like protei	0.560	0.698	0.630	7.1e-45
UNIPROTKB|E2RM76	186	FDX1L "Uncharacterized protein	0.625	0.779	0.579	2.4e-44
ZFIN|ZDB-GENE-060929-1046	195	fdx1l "ferredoxin 1-like" [Dan	0.603	0.717	0.594	3.1e-44

FB|FBgn0011769 Fdxh "Ferredoxin" [Drosophila melanogaster (taxid:7227)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 108/150 (72%), Positives = 129/150 (86%)

Query:    83 PPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 142
             P    P+N   +HT++  RHGE+EWQDPKS DEIVNIT++DKDGKR +++GKVGDNVLYL
Sbjct:    25 PAFYTPHNA--LHTTIPRRHGEFEWQDPKSTDEIVNITYVDKDGKRTKVQGKVGDNVLYL 82

Query:   143 AHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202
             AHR+ I MEGACEASLACTTCHVYV+H+YL  L  AEE+EDDLLD+APFL++NSRLGCQI
Sbjct:    83 AHRHGIEMEGACEASLACTTCHVYVQHDYLQKLKEAEEQEDDLLDMAPFLRENSRLGCQI 142

Query:   203 ILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
             +L K +EG+E+ LPKATRNFYVDGH PKPH
Sbjct:   143 LLDKSMEGMELELPKATRNFYVDGHKPKPH 172

GO:0009055 "electron carrier activity" evidence=ISS;NAS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

WB|WBGene00013532 Y73F8A.27 [Caenorhabditis elegans (taxid:6239)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 96/143 (67%), Positives = 120/143 (83%)

Query:    90 NVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP 149
             N H + +SV  + G++E++DPKSEDE+VNIT++ +DG  R+I+GKVGDNV++LAHRY+I 
Sbjct:    28 NRHFMTSSV-RKTGDFEYEDPKSEDEVVNITYVLRDGTERKIRGKVGDNVMFLAHRYDIE 86

Query:   150 MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELE 209
             MEGACEASLAC+TCHVYV   + + LP   E+EDD+LD+AP LKDNSRLGCQI+LTKEL+
Sbjct:    87 MEGACEASLACSTCHVYVDPAFQNKLPEPLEEEDDMLDMAPALKDNSRLGCQIVLTKELD 146

Query:   210 GIEVTLPKATRNFYVDGHTPKPH 232
             GI VTLP  TRNFYVDGH PKPH
Sbjct:   147 GITVTLPTMTRNFYVDGHVPKPH 169

GO:0009055 "electron carrier activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

MGI|MGI:1915415 Fdx1l "ferredoxin 1-like" [Mus musculus (taxid:10090)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 85/132 (64%), Positives = 105/132 (79%)

Query:   101 RHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLAC 160
             R GE     P+   ++VN+ F+D+ GKR  ++GKVGDNVLYLA R+ + +EGACEASLAC
Sbjct:    43 RAGEEAADSPELPRDVVNVVFVDRSGKRIPVRGKVGDNVLYLAQRHGVDLEGACEASLAC 102

Query:   161 TTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
             +TCHVYV   +LD LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG+E  LPK TR
Sbjct:   103 STCHVYVSEAHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGVEFALPKITR 162

Query:   221 NFYVDGHTPKPH 232
             NFYVDGH PKPH
Sbjct:   163 NFYVDGHIPKPH 174

GO:0005739 "mitochondrion" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

RGD|1561264 Fdx1l "ferredoxin 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 84/132 (63%), Positives = 105/132 (79%)

Query:   101 RHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLAC 160
             R GE E   P+   ++VN+ F+D+ GKR  ++G+VGDNVL+LA R+ + +EGACEASLAC
Sbjct:    43 RAGEDEADSPELPRDVVNVVFVDRSGKRIPVRGRVGDNVLHLAQRHGVDLEGACEASLAC 102

Query:   161 TTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
             +TCHVYV   +LD LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E  LPK TR
Sbjct:   103 STCHVYVSEAHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFALPKITR 162

Query:   221 NFYVDGHTPKPH 232
             NFYVDGH PKPH
Sbjct:   163 NFYVDGHIPKPH 174

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q6P4F2 FDX1L "Adrenodoxin-like protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 82/130 (63%), Positives = 105/130 (80%)

Query:   103 GEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTT 162
             GE +   P+   ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ + +EGACEASLAC+T
Sbjct:    54 GEEDAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACST 113

Query:   163 CHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
             CHVYV  ++LD LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TRNF
Sbjct:   114 CHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNF 173

Query:   223 YVDGHTPKPH 232
             YVDGH PKPH
Sbjct:   174 YVDGHVPKPH 183

GO:0009055 "electron carrier activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

UNIPROTKB|F1S3K4 LOC100526209 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 83/130 (63%), Positives = 105/130 (80%)

Query:   103 GEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTT 162
             GE E   P+   ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ + +EGACEASLAC+T
Sbjct:    57 GEEEAGGPERLGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACST 116

Query:   163 CHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
             CHVYV  ++LD LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TRNF
Sbjct:   117 CHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNF 176

Query:   223 YVDGHTPKPH 232
             YVDGH PKPH
Sbjct:   177 YVDGHIPKPH 186

GO:0005739 "mitochondrion" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|K7GN28 LOC100526209 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 83/130 (63%), Positives = 105/130 (80%)

Query:   103 GEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTT 162
             GE E   P+   ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ + +EGACEASLAC+T
Sbjct:    54 GEEEAGGPERLGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACST 113

Query:   163 CHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
             CHVYV  ++LD LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TRNF
Sbjct:   114 CHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNF 173

Query:   223 YVDGHTPKPH 232
             YVDGH PKPH
Sbjct:   174 YVDGHIPKPH 183

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|Q05B51 FDX1L "Adrenodoxin-like protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 82/130 (63%), Positives = 105/130 (80%)

Query:   103 GEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTT 162
             GE E   P+   ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ + +EGACEASLAC+T
Sbjct:    57 GEEEAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGLDLEGACEASLACST 116

Query:   163 CHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
             CHVYV  ++LD LPP +E+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TRNF
Sbjct:   117 CHVYVSEDHLDLLPPPDEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNF 176

Query:   223 YVDGHTPKPH 232
             YVDGH PKPH
Sbjct:   177 YVDGHVPKPH 186

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|E2RM76 FDX1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 84/145 (57%), Positives = 107/145 (73%)

Query:    88 PNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYE 147
             P    R   +     GE E   P+   ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ 
Sbjct:    42 PATARRFRATGSRPAGEEEAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHG 101

Query:   148 IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKE 207
             I +EGACEASLAC+TCHVYV  ++LD L P EE+E+D+LD+AP L++NSRLGCQI+LT E
Sbjct:   102 IDLEGACEASLACSTCHVYVSEDHLDLLAPPEEREEDMLDMAPLLQENSRLGCQIVLTPE 161

Query:   208 LEGIEVTLPKATRNFYVDGHTPKPH 232
             LEG E TLPK TRNFYVDGH PKPH
Sbjct:   162 LEGAEFTLPKITRNFYVDGHVPKPH 186

GO:0005739 "mitochondrion" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

ZFIN|ZDB-GENE-060929-1046 fdx1l "ferredoxin 1-like" [Danio rerio (taxid:7955)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 85/143 (59%), Positives = 111/143 (77%)

Query:    93 RIHTS--VC-TRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP 149
             R+ TS  VC +       +D  +++ IVN+ +ID+ G+R  ++ +VGDNVLYLAH++ I 
Sbjct:    53 RLRTSIGVCQSEDSSAPEEDAHAQEHIVNVVYIDRSGRRIPVQARVGDNVLYLAHKHGID 112

Query:   150 MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELE 209
             +EGACEASLAC+TCHVYV   + D LP  EE+EDD+LD+AP L++NSRLGCQIILT EL+
Sbjct:   113 LEGACEASLACSTCHVYVSSGHYDRLPEPEEREDDMLDMAPLLQENSRLGCQIILTPELD 172

Query:   210 GIEVTLPKATRNFYVDGHTPKPH 232
             G+E+TLPK TRNFYVDGH PKPH
Sbjct:   173 GMELTLPKVTRNFYVDGHVPKPH 195

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P4F2	ADXL_HUMAN	No assigned EC number	0.6307	0.5603	0.7103	yes	N/A
Q9ZDW6	FER2_RICPR	No assigned EC number	0.5094	0.4568	0.9464	yes	N/A
Q9AKH1	FER2_RICRI	No assigned EC number	0.5094	0.4568	0.9464	yes	N/A
Q05B51	ADXL_BOVIN	No assigned EC number	0.6307	0.5603	0.6989	yes	N/A
Q9CPW2	ADXL_MOUSE	No assigned EC number	0.6439	0.5689	0.7586	yes	N/A
Q08C57	ADXL_DANRE	No assigned EC number	0.5753	0.625	0.7435	yes	N/A
Q9AKM6	FER2_RICMO	No assigned EC number	0.5094	0.4568	0.9464	yes	N/A
P37193	ADXH_DROME	No assigned EC number	0.72	0.6379	0.8604	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
PLN02593	117	PLN02593, PLN02593, adrenodoxin-like ferredoxin pr	1e-55
TIGR02007	110	TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC s	3e-21
PTZ00490	143	PTZ00490, PTZ00490, Ferredoxin superfamily; Provis	2e-18
COG0633	102	COG0633, Fdx, Ferredoxin [Energy production and co	3e-18
cd00207	84	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding	3e-07
pfam04212	69	pfam04212, MIT, MIT (microtubule interacting and t	4e-07
cd02656	75	cd02656, MIT, MIT: domain contained within Microtu	9e-06
pfam00111	77	pfam00111, Fer2, 2Fe-2S iron-sulfur cluster bindin	6e-05
smart00745	77	smart00745, MIT, Microtubule Interacting and Traff	3e-04
cd02681	76	cd02681, MIT_calpain7_1, MIT: domain contained wit	0.001
cd02682	75	cd02682, MIT_AAA_Arch, MIT: domain contained withi	0.002

>gnl|CDD|178203 PLN02593, PLN02593, adrenodoxin-like ferredoxin protein

 Score =  173 bits (440), Expect = 1e-55
 Identities = 63/117 (53%), Positives = 84/117 (71%), Gaps = 1/117 (0%)

Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHE-YLDAL 175
           +++TF+DKDG+ R +K  VG ++L  AH  +I +EGACE SLAC+TCHV V  E   + L
Sbjct: 1   ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKL 60

Query: 176 PPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
           P   ++E+D+LDLA  L + SRLGCQ+I   EL+G+ + LP ATRNF VDGH PKPH
Sbjct: 61  PEPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMRLALPAATRNFAVDGHVPKPH 117

Length = 117

>gnl|CDD|131062 TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC system

 Score = 84.5 bits (209), Expect = 3e-21
 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 131 IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190
           ++ K G+ +L +A    I +E ACE S ACTTCH  V+ E  D+L  A E+E+D+LD A 
Sbjct: 18  VEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVR-EGFDSLEEASEQEEDMLDKAW 76

Query: 191 FLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
            L+ +SRL CQ ++    E + V +PK T N
Sbjct: 77  GLEPDSRLSCQAVVAD--EDLVVEIPKYTIN 105

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 110

>gnl|CDD|185668 PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 30/74 (40%), Positives = 42/74 (56%)

Query: 150 MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELE 209
           +EG C   + C TCHVY+       L    E+E+D+L  A  +K+ SRL CQ+ LT E++
Sbjct: 70  VEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKETSRLACQVDLTPEMD 129

Query: 210 GIEVTLPKATRNFY 223
           G+EV LP    N  
Sbjct: 130 GLEVELPSYVTNRL 143

Length = 143

>gnl|CDD|223706 COG0633, Fdx, Ferredoxin [Energy production and conversion]

 Score = 76.7 bits (189), Expect = 3e-18
 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 118 NITFIDKDGKRREIKGKV-GDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 176
            I F+  DG+    +    G+ +L  A R  IP+E AC    AC TC V V   + D + 
Sbjct: 3   KIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGG-ACGTCRVKVLEGF-DEVS 60

Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKAT 219
           P EE E+DLLD A  L+ NSRL CQ  +  +L+   V  P+ T
Sbjct: 61  PPEESEEDLLDAA-GLEGNSRLSCQCRVKGDLDIEVVEEPEYT 102

Length = 102

>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPA 178
           +T     G   E++   G+ +L  A    I +  +C A  AC TC V V    +D   P+
Sbjct: 1   VTINVP-GSGVEVEVPEGETLLDAAREAGIDIPYSCRAG-ACGTCKVEVVEGEVDQSDPS 58

Query: 179 EEKEDDLLDLAPFLKDNSRLGCQIILTKELE 209
              E++        +    L CQ  +T  L 
Sbjct: 59  LLDEEE-------AEGGYVLACQTRVTDGLV 82

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin. Length = 84

>gnl|CDD|146707 pfam04212, MIT, MIT (microtubule interacting and transport) domain

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 11 AQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENV-AAWRQKAQQYLNRAEVLKDK 69
           + AV+ DE    E A   Y+ A  +LL+      D     A RQK  +YL+RAE LK+ 
Sbjct: 9  VKKAVEADEAGNYEEALELYKEAIEYLLQALKYEPDPKRREALRQKIAEYLDRAEELKEL 68

Query: 70 I 70
          +
Sbjct: 69 L 69

The MIT domain forms an asymmetric three-helix bundle and binds ESCRT-III (endosomal sorting complexes required for transport) substrates. Length = 69

>gnl|CDD|239121 cd02656, MIT, MIT: domain contained within Microtubule Interacting and Trafficking molecules

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 8  INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENV-AAWRQKAQQYLNRAEVL 66
              + AVK DE+   E A   Y+ A  +LL+   +  +  +    R+K ++YL+RAE L
Sbjct: 7  KELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFL 66

Query: 67 KDKIQ 71
          K+ ++
Sbjct: 67 KELLK 71

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear. Length = 75

>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 13/87 (14%)

Query: 122 IDKDGKRREIKGKVGDNVLYLAHR---YEIPMEGACEASLACTTCHVYVKHEYLDALPPA 178
           +  DGK   I+   G+  L  A      +IP   +C     C TC V V     +     
Sbjct: 1   VTIDGKGVTIEVPDGETTLLDAAEEAGIDIPY--SCRGG-GCGTCAVKVLEG--EVQSDQ 55

Query: 179 EEKEDDLLDLAPFLKDNSRLGCQIILT 205
              EDD L           L CQ    
Sbjct: 56  SFLEDDELA-----AGYVVLACQTYPK 77

Length = 77

>gnl|CDD|197854 smart00745, MIT, Microtubule Interacting and Trafficking molecule domain

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 14 AVKFDEENQDEIAAYYYQAAARFLLE-TANSSSDENVAAWRQKAQQYLNRAEVLKDKIQ 71
          A+K DE    E A   Y+ A  +LLE     S  +   A + KA +YL+RAE +K  + 
Sbjct: 15 ALKADEAGNYEEALELYKKAIEYLLEGIKVESDSKRREALKAKAAEYLDRAEEIKKSLL 73

Length = 77

>gnl|CDD|239144 cd02681, MIT_calpain7_1, MIT: domain contained within Microtubule Interacting and Trafficking molecules

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 11 AQMAVKFDEENQDEIAAYYYQAAARFLL--ETANSSSDENVAAWRQKAQQYLNRAEVLKD 68
          A++AV+ D+E +   A +YY+ AA+ L+  E A + +D ++   ++K+ +YL+RA+ L  
Sbjct: 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQ 69

Query: 69 KIQ 71
           +Q
Sbjct: 70 LVQ 72

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. Length = 76

>gnl|CDD|239145 cd02682, MIT_AAA_Arch, MIT: domain contained within Microtubule Interacting and Trafficking molecules

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 3  LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLE-TANSSSDENVAAWRQKAQQYLN 61
          L E     A  AVK ++E   E A   Y+ A   L +   N         + Q   +Y  
Sbjct: 2  LEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKR 61

Query: 62 RAEVLKDKI 70
          R EVL+ + 
Sbjct: 62 RIEVLEKQN 70

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG3309|consensus	159		100.0
PLN02593	117	adrenodoxin-like ferredoxin protein	100.0
PTZ00490	143	Ferredoxin superfamily; Provisional	99.96
TIGR02007	110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	99.89
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	99.87
COG0633	102	Fdx Ferredoxin [Energy production and conversion]	99.87
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	99.86
TIGR02008	97	fdx_plant ferredoxin [2Fe-2S]. This model represen	99.83
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	99.83
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	99.82
CHL00134	99	petF ferredoxin; Validated	99.8
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	99.79
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	99.79
PF04212	69	MIT: MIT (microtubule interacting and transport) d	99.78
PLN03136	148	Ferredoxin; Provisional	99.76
PTZ00038	191	ferredoxin; Provisional	99.75
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.74
KOG0739|consensus	439		99.74
cd02656	75	MIT MIT: domain contained within Microtubule Inter	99.73
PRK10713	84	2Fe-2S ferredoxin YfaE; Provisional	99.73
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	99.71
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	99.69
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.68
cd00207	84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	99.67
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.66
COG3894	614	Uncharacterized metal-binding protein [General fun	99.62
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.62
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.61
PF00111	78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	99.59
PRK05713	312	hypothetical protein; Provisional	99.58
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.49
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.48
KOG4509|consensus	247		99.31
PF13510	82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	98.87
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	98.82
PRK08166	847	NADH dehydrogenase subunit G; Validated	98.59
PTZ00305	297	NADH:ubiquinone oxidoreductase; Provisional	98.1
PRK06259	486	succinate dehydrogenase/fumarate reductase iron-su	98.07
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.86
PRK09908	159	xanthine dehydrogenase subunit XdhC; Provisional	97.82
PRK08493	819	NADH dehydrogenase subunit G; Validated	97.82
PRK07860	797	NADH dehydrogenase subunit G; Validated	97.81
PF13085	110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	97.8
PRK08640	249	sdhB succinate dehydrogenase iron-sulfur subunit;	97.75
PRK09130	687	NADH dehydrogenase subunit G; Validated	97.74
COG1034	693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	97.7
PRK13552	239	frdB fumarate reductase iron-sulfur subunit; Provi	97.67
PRK12577	329	succinate dehydrogenase iron-sulfur subunit; Provi	97.63
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	97.61
PRK09129	776	NADH dehydrogenase subunit G; Validated	97.6
PRK11433	217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	97.54
PRK07570	250	succinate dehydrogenase/fumarate reductase iron-su	97.46
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	97.45
PLN00129	276	succinate dehydrogenase [ubiquinone] iron-sulfur s	97.42
PRK12385	244	fumarate reductase iron-sulfur subunit; Provisiona	97.42
TIGR00384	220	dhsB succinate dehydrogenase and fumarate reductas	97.39
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	97.35
TIGR03193	148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	97.34
COG0479	234	FrdB Succinate dehydrogenase/fumarate reductase, F	97.05
PRK12576	279	succinate dehydrogenase iron-sulfur subunit; Provi	97.03
TIGR03198	151	pucE xanthine dehydrogenase E subunit. This gene h	96.97
COG2080	156	CoxS Aerobic-type carbon monoxide dehydrogenase, s	96.95
PRK12386	251	fumarate reductase iron-sulfur subunit; Provisiona	96.94
PRK12575	235	succinate dehydrogenase iron-sulfur subunit; Provi	96.74
PRK05950	232	sdhB succinate dehydrogenase iron-sulfur subunit;	96.5
PF08969	115	USP8_dimer: USP8 dimerisation domain; InterPro: IP	96.37
PRK09800	956	putative hypoxanthine oxidase; Provisional	95.86
TIGR02963	467	xanthine_xdhA xanthine dehydrogenase, small subuni	95.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.84
TIGR03313	951	Se_sel_red_Mo probable selenate reductase, molybde	94.58
KOG2282|consensus	708		93.87
PLN00192	1344	aldehyde oxidase	93.38
TIGR02969	1330	mam_aldehyde_ox aldehyde oxidase. Members of this	93.32
TIGR03311	848	Se_dep_Molyb_1 selenium-dependent molybdenum hydro	93.2
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.07
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	92.79
KOG2709|consensus	560		92.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.01
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	90.69
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.8
PF12063	238	DUF3543: Domain of unknown function (DUF3543); Int	89.66
KOG2880|consensus	424		89.65
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	88.9
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	86.0
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.85
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	83.66
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	82.64
PF12063	238	DUF3543: Domain of unknown function (DUF3543); Int	80.59

>KOG3309|consensus

Probab=100.00  E-value=4.3e-36  Score=238.09  Aligned_cols=126  Identities=57%  Similarity=0.956  Sum_probs=119.5

Q ss_pred             ccccCCCCCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHh
Q psy1437         105 YEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDD  184 (232)
Q Consensus       105 ~~~~~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~  184 (232)
                      .+|..+++.+  |+|+|++++|.+..+.+..|+|||++|.++||++++.|+|+-+|+||||+|.+.+++++++|.++|.+
T Consensus        34 ~~~~~~~~e~--i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~D  111 (159)
T KOG3309|consen   34 PSKGPRKVED--IKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEEND  111 (159)
T ss_pred             cccCCCCCce--EEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHH
Confidence            4555555543  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcCCCCCCcEEeeeeEEecCCCceEEEecCcccccccCCCCCCCC
Q psy1437         185 LLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH  232 (232)
Q Consensus       185 ~L~~~~~~~~g~RLaCQ~~~~~dl~g~~V~lp~~~~~~~~~~~~~~~~  232 (232)
                      +|+.+..+.++|||+||+.++++|+||+|.||..+||+++|||+|+||
T Consensus       112 mLDlA~gLt~tSRLGCQI~l~keldG~~v~vP~atrn~~vd~~~~kph  159 (159)
T KOG3309|consen  112 MLDLAFGLTETSRLGCQIVLTKELDGMRVAVPEATRNFRVDGFVPKPH  159 (159)
T ss_pred             HHHhhhccccccccceEEEeccccCCcEEECccccccccccCCCCCCC
Confidence            999999999999999999999999999999999999999999999999

>PLN02593 adrenodoxin-like ferredoxin protein

Probab=100.00  E-value=1.7e-33  Score=219.02  Aligned_cols=116  Identities=53%  Similarity=0.948  Sum_probs=109.2

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEe-cCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVK-HEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~-~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      |+|+|++++|.+++|.+.+|+|||++++++|+++++.|||.|.||||+|+|+ .++.+.++++++.|.++|+...++.++
T Consensus         1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~   80 (117)
T PLN02593          1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET   80 (117)
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence            5899999999999999999999999999999999999999999999999994 556788999999999999855788999


Q ss_pred             cEEeeeeEEecCCCceEEEecCcccccccCCCCCCCC
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH  232 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~~~~~~~~~~~~~  232 (232)
                      ||||||+.+.++|+|++|+||+..+|+.+++|+|+||
T Consensus        81 sRLaCQ~~v~~~~~~~~v~ip~~~~~~~~~~~~~~~~  117 (117)
T PLN02593         81 SRLGCQVIAKPELDGMRLALPAATRNFAVDGHVPKPH  117 (117)
T ss_pred             eEecceeEeecCCCCEEEEcCchhccccccCCCCCCC
Confidence            9999999999999999999999999999999999999

>PTZ00490 Ferredoxin superfamily; Provisional

Probab=99.96  E-value=2.4e-28  Score=195.48  Aligned_cols=109  Identities=32%  Similarity=0.584  Sum_probs=101.2

Q ss_pred             CceeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437         114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL  192 (232)
Q Consensus       114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~  192 (232)
                      ...|+|+|++++|.+++|++++|+|||+++.++ ++++++.|||.|+||||||+|.+||++.++++++.|.++|+...++
T Consensus        33 ~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~  112 (143)
T PTZ00490         33 PGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDV  112 (143)
T ss_pred             CCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccC
Confidence            345999999999999999999999999999995 6899999999999999999999999999999999999999865589


Q ss_pred             CCCcEEeeeeEEecCCCceEEEecCccccc
Q psy1437         193 KDNSRLGCQIILTKELEGIEVTLPKATRNF  222 (232)
Q Consensus       193 ~~g~RLaCQ~~~~~dl~g~~V~lp~~~~~~  222 (232)
                      .+|||||||+.+++||+|++|++|+...|.
T Consensus       113 ~~gsRLaCQi~v~~~ldgl~V~vp~~~~~~  142 (143)
T PTZ00490        113 KETSRLACQVDLTPEMDGLEVELPSYVTNR  142 (143)
T ss_pred             CCCcEEeeeEEEecCCCCEEEEeCcccccc
Confidence            999999999999999999999999887653

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system

Probab=99.89  E-value=1.1e-22  Score=156.60  Aligned_cols=95  Identities=41%  Similarity=0.650  Sum_probs=82.2

Q ss_pred             eCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         123 DKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       123 ~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      .++|..  |++.+|+|||++++++|+++++.|+|.|+||||+|+|.+|. ..+++++..|.+.|+...++.++||||||+
T Consensus        12 ~p~~~~--~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~-~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~   88 (110)
T TIGR02007        12 CPEGAV--VEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGF-DSLEEASEQEEDMLDKAWGLEPDSRLSCQA   88 (110)
T ss_pred             CCCCeE--EEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeecc-ccCCCCCHHHHHHHhhccCCCCCcEEeeeE
Confidence            466754  99999999999999999999999999999999999999995 668888888988987545788999999999


Q ss_pred             EEecCCCceEEEecCccccc
Q psy1437         203 ILTKELEGIEVTLPKATRNF  222 (232)
Q Consensus       203 ~~~~dl~g~~V~lp~~~~~~  222 (232)
                      .+.++  +++|++|..+++.
T Consensus        89 ~~~~~--dl~v~~~~~~~~~  106 (110)
T TIGR02007        89 VVADE--DLVVEIPKYTINH  106 (110)
T ss_pred             EEcCC--CEEEEECchhhhh
Confidence            99853  4999999766543

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.87  E-value=5.2e-22  Score=142.82  Aligned_cols=71  Identities=28%  Similarity=0.506  Sum_probs=66.6

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKIQV   72 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~~~   72 (232)
                      ++.++|++++++||++|++|+|++|+.||++||++|+.++ ++ +|++.++.||+|+.+||+|||+||+++..
T Consensus         1 ~le~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l~~   73 (76)
T cd02681           1 ALERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLVQG   73 (76)
T ss_pred             CHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3678999999999999999999999999999999999986 66 89999999999999999999999999853

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG0633 Fdx Ferredoxin [Energy production and conversion]

Probab=99.87  E-value=9.3e-22  Score=149.58  Aligned_cols=100  Identities=39%  Similarity=0.572  Sum_probs=84.8

Q ss_pred             eeEEEEEeCCCCE-EEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437         116 IVNITFIDKDGKR-REIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD  194 (232)
Q Consensus       116 mv~Vt~~~~~G~~-~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~  194 (232)
                      |.+++|+..++.. ..+.+..|+|||++|.++||++++.|+| |.||||+|+|.+| ++.++++++.|.++|+ +....+
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~-g~C~TC~v~v~~G-~~~v~~~~~~e~~~l~-~~~~~~   77 (102)
T COG0633           1 MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRG-GACGTCRVKVLEG-FDEVSPPEESEEDLLD-AAGLEG   77 (102)
T ss_pred             CCceEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCC-CccCccEEEEecC-cccCCCcchHHHHHHH-hhccCC
Confidence            3456666666643 4455666999999999999999999997 6999999999999 6889999999999997 677889


Q ss_pred             CcEEeeeeEEecCCCceEEEecCc
Q psy1437         195 NSRLGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       195 g~RLaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      ++||+||+.+.+|++..++..|..
T Consensus        78 ~~rL~Cq~~~~~d~~i~~~~~~~~  101 (102)
T COG0633          78 NSRLSCQCRVKGDLDIEVVEEPEY  101 (102)
T ss_pred             CcEEeeeeEECCCcceEEEeccCC
Confidence            999999999999988888888753

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.86  E-value=3e-21  Score=139.49  Aligned_cols=74  Identities=23%  Similarity=0.333  Sum_probs=69.8

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLR   76 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~   76 (232)
                      ...+|++++++||++|++|+|++|+.||++||++|++++ +++|+..++.||+|+.+|++|||+||++|++.+++
T Consensus         2 ~~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~~~~   76 (77)
T cd02683           2 LELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQEKED   76 (77)
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Confidence            367899999999999999999999999999999999999 78999999999999999999999999999877654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]

Probab=99.83  E-value=2.3e-20  Score=140.63  Aligned_cols=95  Identities=21%  Similarity=0.329  Sum_probs=78.9

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      ..+|+|+.++|..+++.+.+|+|||++++++||+++++|+ +|.||+|+++|.+|.+.. .     +...|+ ..++.+|
T Consensus         2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~~~~-~-----~~~~l~-~~~~~~g   73 (97)
T TIGR02008         2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCR-AGACSTCAGKVEEGTVDQ-S-----DQSFLD-DDQMEAG   73 (97)
T ss_pred             eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCceEEEeCcEec-C-----ccCCCC-HHHHhCC
Confidence            3578886688877779999999999999999999999998 799999999999996431 1     112344 3567889


Q ss_pred             cEEeeeeEEecCCCceEEEecCcccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATRN  221 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~~  221 (232)
                      +||+||+.+.+|   ++|++|...++
T Consensus        74 ~~LaC~~~~~~d---i~v~~~~~~~~   96 (97)
T TIGR02008        74 YVLTCVAYPTSD---CTIETHKEEDL   96 (97)
T ss_pred             eEEEeeCEECCC---eEEEecccccc
Confidence            999999999998   99999987664

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.83  E-value=4e-20  Score=132.25  Aligned_cols=68  Identities=28%  Similarity=0.271  Sum_probs=65.0

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKI   70 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~   70 (232)
                      +.++|+.++++||++|+.|+|++|+.||++||++|++++ ..+|+.++..||+|++||++|||.||+.+
T Consensus         2 L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v   70 (75)
T cd02682           2 LEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN   70 (75)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999999999999 46899999999999999999999999987

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.82  E-value=6.6e-20  Score=131.88  Aligned_cols=70  Identities=30%  Similarity=0.334  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVM   73 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~   73 (232)
                      +++|+.++++||+.|++|+|++|+.+|.+|+++|+.++ +|+|+..|+.||+|+.+|++|||+||++|++.
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~~l~~~   73 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKALIASD   73 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            57999999999999999999999999999999999999 79999999999999999999999999999654

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>CHL00134 petF ferredoxin; Validated

Probab=99.80  E-value=2.7e-19  Score=135.30  Aligned_cols=94  Identities=20%  Similarity=0.288  Sum_probs=76.9

Q ss_pred             eEEEEEeC-CCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         117 VNITFIDK-DGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       117 v~Vt~~~~-~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      .+|+|.++ +|..+.|.++.|+|||++|+++||++++.|+ .|.||+|+++|.+|.+.. .     +...|+ ..++.+|
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~v~~-~-----~~~~l~-~~e~~~g   75 (99)
T CHL00134          4 YKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCR-AGACSTCAGKVTEGTVDQ-S-----DQSFLD-DDQLEAG   75 (99)
T ss_pred             EEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEEeCcccc-C-----cccCCC-HHHHhCC
Confidence            56776532 5666789999999999999999999999999 899999999999996532 1     112344 3567889


Q ss_pred             cEEeeeeEEecCCCceEEEecCcccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATRN  221 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~~  221 (232)
                      ++|+||+.+.+|   ++|++|...++
T Consensus        76 ~~L~C~~~~~~d---~~i~~~~~~~~   98 (99)
T CHL00134         76 FVLTCVAYPTSD---CTILTHQEEEL   98 (99)
T ss_pred             eEEEeeCEECCC---eEEEecccccc
Confidence            999999999999   99999987764

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.79  E-value=6.1e-19  Score=126.78  Aligned_cols=68  Identities=29%  Similarity=0.382  Sum_probs=65.6

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDK   69 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~   69 (232)
                      ||+.+|++++++||+.|++|+|++|+.+|++||++|+.++ +++|+..|+.++.|+.+||+|||+|+..
T Consensus         1 d~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~   69 (75)
T cd02677           1 DYLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRL   69 (75)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999 7999999999999999999999999874

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.79  E-value=8.1e-19  Score=126.22  Aligned_cols=72  Identities=24%  Similarity=0.343  Sum_probs=68.1

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVM   73 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~   73 (232)
                      +|+++|+.++++||+.|+.|+|++|+.+|.+|+++|+.++ .++|+..++.|++|+.+|++|||+||++|++.
T Consensus         1 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l~~~   73 (75)
T cd02678           1 DFLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYLAKK   73 (75)
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5789999999999999999999999999999999999999 68899999999999999999999999998543

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=99.78  E-value=2e-18  Score=122.05  Aligned_cols=68  Identities=34%  Similarity=0.452  Sum_probs=64.4

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKI   70 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~   70 (232)
                      ++++|++++++||++|++|+|++|+.+|++|+++|+.++ .++++..++.|++|+.+|++|||+||++|
T Consensus         1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~~L   69 (69)
T PF04212_consen    1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKEYL   69 (69)
T ss_dssp             -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            478999999999999999999999999999999999999 57899999999999999999999999976

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PLN03136 Ferredoxin; Provisional

Probab=99.76  E-value=2.5e-18  Score=138.52  Aligned_cols=93  Identities=20%  Similarity=0.357  Sum_probs=77.4

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      .++|+|++++| .++|++++|+|||++++++||++|+.|+ .|.||+|+++|.+|.++.      .+...|+ .+++.+|
T Consensus        54 ~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr-~G~CGtC~~~l~~G~V~~------~~~~~L~-~~e~~~G  124 (148)
T PLN03136         54 TYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCR-AGSCSSCAGKVVSGSIDQ------SDQSFLD-DEQISEG  124 (148)
T ss_pred             eEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEecCcCcc------CcccCCC-HHHhcCC
Confidence            46788766666 3469999999999999999999999999 899999999999997542      1223465 4677899


Q ss_pred             cEEeeeeEEecCCCceEEEecCccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      +||+||+++.+|   ++|++|.+..
T Consensus       125 ~~LaC~a~p~sD---~~Ie~~~e~~  146 (148)
T PLN03136        125 YVLTCVAYPTSD---VVIETHKEEA  146 (148)
T ss_pred             EEEEeEeEECCC---cEEecCChhh
Confidence            999999999998   9999997654

>PTZ00038 ferredoxin; Provisional

Probab=99.75  E-value=3.6e-18  Score=142.51  Aligned_cols=94  Identities=22%  Similarity=0.345  Sum_probs=78.2

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      ..+|+|..++|. +++.+++|+|||++|+++||++|+.|++ |.||+|+++|.+|.++.      .|...|+ .+++++|
T Consensus        95 ~~~Vt~~~~~g~-~~~~v~~geTILdAae~aGI~lp~sCr~-G~CGtCkvrV~~GeV~~------~e~~~Ls-~ee~~~G  165 (191)
T PTZ00038         95 FYNITLQTPDGE-KVIECDEDEYILDAAERQGVELPYSCRG-GSCSTCAAKLLEGEVDN------EDQSYLD-DEQLKKG  165 (191)
T ss_pred             eEEEEEEeCCCc-EEEEeCCCCcHHHHHHHcCCCCCcCCCC-ccCCCCEeEEeeccccc------CccccCC-HHHhcCC
Confidence            357888656664 4699999999999999999999999995 99999999999996542      2334565 4678899


Q ss_pred             cEEeeeeEEecCCCceEEEecCcccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATRN  221 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~~  221 (232)
                      +||+||+++.+|   ++|++|...+.
T Consensus       166 ~~LaCqa~p~sD---i~Ie~p~e~~~  188 (191)
T PTZ00038        166 YCLLCTCYPKSD---CTIETHKEDEL  188 (191)
T ss_pred             EEEEeeCEECCC---eEEecCChHHh
Confidence            999999999998   99999987653

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.74  E-value=6.7e-18  Score=156.47  Aligned_cols=94  Identities=21%  Similarity=0.305  Sum_probs=78.8

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|+++..+|..+++.+.+|+|||++|+++|+++++.|+|.|.||+|+|+|.+|..    .++..|...|+ ..++.+|+
T Consensus        30 ~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~----~~~~~~~~~L~-~~~~~~g~  104 (405)
T TIGR01941        30 GDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGG----EILPTELSHFS-KREAKEGW  104 (405)
T ss_pred             ccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCc----CCChhhhhhcC-HhHhcCCc
Confidence            34555556676678999999999999999999999999988999999999999963    23455667787 46789999


Q ss_pred             EEeeeeEEecCCCceEEEecCc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      ||+||+.+++|   ++|++|..
T Consensus       105 rLaCq~~~~~d---~~i~~~~~  123 (405)
T TIGR01941       105 RLSCQVKVKQD---MSIEIPEE  123 (405)
T ss_pred             EEEeeCEECCC---EEEEECcc
Confidence            99999999998   99999843

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>KOG0739|consensus

Probab=99.74  E-value=6.1e-18  Score=149.19  Aligned_cols=74  Identities=24%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL   75 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~   75 (232)
                      +++++||+++++|+++|+++||++|+.+|+.|++||+.++ || ++++.|+.||.|+.||++|||+||.+|+....
T Consensus         5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~   80 (439)
T KOG0739|consen    5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEK   80 (439)
T ss_pred             hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4789999999999999999999999999999999999999 88 67779999999999999999999999976553

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.73  E-value=1.8e-17  Score=118.95  Aligned_cols=70  Identities=30%  Similarity=0.392  Sum_probs=66.2

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQV   72 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~   72 (232)
                      ++++|+.++++||+.|+.|+|++|+.+|.+|+++|+.++ .++++..+..|++|+.+|++|||+||+.++.
T Consensus         2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l~~   72 (75)
T cd02656           2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELLKK   72 (75)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999999 6789999999999999999999999999854

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional

Probab=99.73  E-value=1.9e-17  Score=121.59  Aligned_cols=83  Identities=16%  Similarity=0.293  Sum_probs=67.4

Q ss_pred             eeEEEEEeCCCCEEEEEecC-CchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKV-GDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD  194 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~-G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~  194 (232)
                      |.+|+|. ++|..  |.+.+ |+|||++++++||++|++|+ .|.||+|++++++|.++.... ..         .++.+
T Consensus         1 ~~~v~~~-~~~~~--~~~~~~~~tlL~a~~~~gi~~p~~Cr-~G~Cg~C~~~~~sG~v~~~~~-~~---------~~~~~   66 (84)
T PRK10713          1 MARVTLR-ITGTQ--LLCQDEHPSLLAALESHNVAVEYQCR-EGYCGSCRTRLVAGQVDWIAE-PL---------AFIQP   66 (84)
T ss_pred             CCEEEEE-eCCcE--EEecCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEeEEEeCeEecCCC-cc---------chhhC
Confidence            6778874 67755  88886 59999999999999999999 799999999999997653211 11         24568


Q ss_pred             CcEEeeeeEEecCCCceEEEe
Q psy1437         195 NSRLGCQIILTKELEGIEVTL  215 (232)
Q Consensus       195 g~RLaCQ~~~~~dl~g~~V~l  215 (232)
                      |++|+||+++.+|   ++|++
T Consensus        67 g~~L~C~~~p~sd---~~ie~   84 (84)
T PRK10713         67 GEILPCCCRAKGD---IEIEM   84 (84)
T ss_pred             CEEEEeeCEECCC---EEEeC
Confidence            9999999999998   88874

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.71  E-value=5.3e-17  Score=116.31  Aligned_cols=65  Identities=28%  Similarity=0.295  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQ----QYLNRAEVLKDKIQ   71 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~----eY~~RaE~lk~~~~   71 (232)
                      +++||.++++|++.|++|+|++|+.+|.+|+++|+.   ++++..++.|+.|+.    +|++|||+||.++.
T Consensus         3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~---ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l~   71 (75)
T cd02680           3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN---TSNETMDQALQTKLKQLARQALDRAEALKESMS   71 (75)
T ss_pred             HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH---hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            479999999999999999999999999999999997   679999999999996    99999999999984

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=99.69  E-value=2e-16  Score=113.98  Aligned_cols=70  Identities=30%  Similarity=0.347  Sum_probs=66.6

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQ   71 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~   71 (232)
                      +++++|++++++||+.|+.|+|++|+.+|.+|+++|+.++ .++++..++.+++|+.+|++|||+||..+.
T Consensus         3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~   73 (77)
T smart00745        3 DYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLL   73 (77)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999 678999999999999999999999999884

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.68  E-value=1.9e-16  Score=146.96  Aligned_cols=92  Identities=24%  Similarity=0.345  Sum_probs=75.9

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      +++|++. .+ ..+++++.+|+|||++++++|+++++.|+|+|.||+|+|+|.+|+..    +...|...|+ ..++.+|
T Consensus        35 ~~~i~~~-~~-~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~----~~~~e~~~l~-~~e~~~g  107 (409)
T PRK05464         35 DVTIKIN-GD-PEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGD----ILPTELSHIS-KREAKEG  107 (409)
T ss_pred             cEEEEEc-CC-CcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcC----CChhhhhhcC-HhhccCC
Confidence            4778863 21 12469999999999999999999999999889999999999999642    2345566776 4678899


Q ss_pred             cEEeeeeEEecCCCceEEEecC
Q psy1437         196 SRLGCQIILTKELEGIEVTLPK  217 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~  217 (232)
                      +|||||+.+.+|   ++|+++.
T Consensus       108 ~rLaCq~~~~~d---~~ie~~~  126 (409)
T PRK05464        108 WRLSCQVKVKQD---MKIEVPE  126 (409)
T ss_pred             cEEEeeCEECCC---EEEEECc
Confidence            999999999998   9999874

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain

Probab=99.67  E-value=2e-16  Score=114.74  Aligned_cols=84  Identities=29%  Similarity=0.391  Sum_probs=65.1

Q ss_pred             EEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEE
Q psy1437         119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRL  198 (232)
Q Consensus       119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RL  198 (232)
                      |+|. .+|..++|.+.+|+|||++++++|+++++.|++ |.||+|+|+|.+|.....++      ..+. ..+..+++||
T Consensus         1 v~~~-~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~-g~Cg~C~v~v~~G~~~~~~~------~~~~-~~~~~~~~~L   71 (84)
T cd00207           1 VTIN-VPGSGVEVEVPEGETLLDAAREAGIDIPYSCRA-GACGTCKVEVVEGEVDQSDP------SLLD-EEEAEGGYVL   71 (84)
T ss_pred             CEEe-cCCCCEEEEECCCCcHHHHHHHcCCCcccCCCC-cCCcCCEEEEeeCccccCcc------cCCC-HHHHhCCeEE
Confidence            3444 334446799999999999999999999999985 89999999999997542221      2232 3456789999


Q ss_pred             eeeeEEecCCCceEEE
Q psy1437         199 GCQIILTKELEGIEVT  214 (232)
Q Consensus       199 aCQ~~~~~dl~g~~V~  214 (232)
                      +||+.+.+|   ++|+
T Consensus        72 aC~~~~~~~---i~v~   84 (84)
T cd00207          72 ACQTRVTDG---LVIE   84 (84)
T ss_pred             EEeCeeCCC---cEEC
Confidence            999999877   7763

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.66  E-value=1.4e-16  Score=139.35  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=79.1

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      ++|.+.  +...+++.+++|.+||.++..+||.+++.|||.|+||.|+|+|.+|.-+    +-+.|...++ ..+..+||
T Consensus        37 ~ti~IN--~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge----~LpTe~sh~s-krea~eG~  109 (410)
T COG2871          37 ITIKIN--GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGE----ILPTELSHIS-KREAKEGW  109 (410)
T ss_pred             eEEEeC--CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCc----cCcchhhhhh-hhhhhccc
Confidence            556642  3344679999999999999999999999999999999999999999533    3445566676 37889999


Q ss_pred             EEeeeeEEecCCCceEEEecCccccc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKATRNF  222 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~~~~  222 (232)
                      ||+||+.+..|   |.|++|++..+.
T Consensus       110 RLsCQ~~Vk~d---m~levpEe~fgv  132 (410)
T COG2871         110 RLSCQVNVKHD---MDLEVPEEVFGV  132 (410)
T ss_pred             eEEEEeccccc---ceeechHHhcCc
Confidence            99999999999   999999875543

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=99.62  E-value=4.6e-16  Score=144.11  Aligned_cols=91  Identities=24%  Similarity=0.478  Sum_probs=78.0

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      |+-|||. |+|++  .+ ++|+|+|++|++.|+.+.+.|||.|+||.|.|.|.+|.. ++...++-|+ ++.     ..|
T Consensus         1 ~p~v~f~-psgkr--~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~-~i~s~~dh~k-~~~-----~~g   69 (614)
T COG3894           1 MPLVTFM-PSGKR--GE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNH-KIVSSTDHEK-YLR-----ERG   69 (614)
T ss_pred             CceeEee-cCCCc--CC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCc-eeccchhHHH-HHH-----hhc
Confidence            5779986 99988  66 999999999999999999999999999999999999973 4544455554 332     249


Q ss_pred             cEEeeeeEEecCCCceEEEecCccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      +|||||+.+.+|   ++|.+|+++|
T Consensus        70 ~rlac~~~v~gd---~~i~ip~es~   91 (614)
T COG3894          70 YRLACQAQVLGD---LVIFIPPESR   91 (614)
T ss_pred             eeeeeehhhcCc---eEEEcCchhh
Confidence            999999999998   9999999987

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.62  E-value=1.2e-15  Score=138.02  Aligned_cols=92  Identities=14%  Similarity=0.248  Sum_probs=74.4

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|+|. ++|+  ++.+.+|+|||++++++||++++.|+ .|.||+|+|+|.+|.++.    ...+...|+ ..+..+|+
T Consensus         3 ~~v~~~-~~~~--~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~~----~~~~~~~l~-~~~~~~g~   73 (339)
T PRK07609          3 FQVTLQ-PSGR--QFTAEPDETILDAALRQGIHLPYGCK-NGACGSCKGRLLEGEVEQ----GPHQASALS-GEERAAGE   73 (339)
T ss_pred             EEEEEe-cCCe--EEEeCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEEEEEECcEec----ccccccCCC-HHHHhCCc
Confidence            468875 6665  49999999999999999999999998 899999999999997542    112234554 35677899


Q ss_pred             EEeeeeEEecCCCceEEEecCccc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      ||+||+++.+|   ++|++|....
T Consensus        74 ~L~C~~~~~~d---~~i~~~~~~~   94 (339)
T PRK07609         74 ALTCCAKPLSD---LVLEAREVPA   94 (339)
T ss_pred             EEEeeCEECCC---EEEEeccccc
Confidence            99999999998   9999886533

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.61  E-value=1.8e-15  Score=137.32  Aligned_cols=92  Identities=18%  Similarity=0.222  Sum_probs=74.1

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcE
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR  197 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~R  197 (232)
                      +|++..++|....+++.+|+|||++++++|+.+++.|+ .|.||+|+++|++|.++.    ...+...|+ ..+..+|+|
T Consensus         4 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~-~G~Cg~C~~~~~~G~~~~----~~~~~~~l~-~~~~~~g~~   77 (340)
T PRK11872          4 KVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCR-EGVCGTCQGRCESGIYSQ----DYVDEDALS-ERDLAQRKM   77 (340)
T ss_pred             EEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCC-CeECCCCEEEEEeCcccc----CccccccCC-HHHHhCCeE
Confidence            45554467877778899999999999999999999999 799999999999997432    112223454 356779999


Q ss_pred             EeeeeEEecCCCceEEEecCc
Q psy1437         198 LGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       198 LaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      |+||+++.+|   ++|++|..
T Consensus        78 L~C~~~~~~d---~~i~~~~~   95 (340)
T PRK11872         78 LACQTRVKSD---AAFYFDFD   95 (340)
T ss_pred             EEeeCEECCc---eEEEecCc
Confidence            9999999999   99998754

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions

Probab=99.59  E-value=1.5e-15  Score=109.08  Aligned_cols=75  Identities=27%  Similarity=0.359  Sum_probs=56.3

Q ss_pred             eCCCCEEEEEecCCch-HHHHHHHC-CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEee
Q psy1437         123 DKDGKRREIKGKVGDN-VLYLAHRY-EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGC  200 (232)
Q Consensus       123 ~~~G~~~~v~~~~G~t-LL~aa~~~-gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaC  200 (232)
                      ..+|+.++|.+.+|+| ||++|+++ |+++++.|+| |.||+|+|+|.+|.+ ... ....|...+.     ..+.||||
T Consensus         2 ~i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~-g~Cg~C~v~v~~G~~-~~~-~~~~~~~~~~-----~~~~rLaC   73 (78)
T PF00111_consen    2 TINGKGVTVEVPPGETLLLDALERAGGIGIPYSCGG-GGCGTCRVRVLEGEV-QSN-ETFLEDEELA-----EGGIRLAC   73 (78)
T ss_dssp             ETTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSS-SSSSTTEEEEEESEE-ETT-TSSSHHHHHH-----TTEEEEGG
T ss_pred             EECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCC-CccCCcEEEEeeCcc-cCC-cccCCHHHHH-----cCCCcCCc
Confidence            3578888899999999 99999999 9999999997 559999999999975 111 1222222221     23348999


Q ss_pred             eeEEe
Q psy1437         201 QIILT  205 (232)
Q Consensus       201 Q~~~~  205 (232)
                      |++++
T Consensus        74 q~~~t   78 (78)
T PF00111_consen   74 QTRVT   78 (78)
T ss_dssp             GSEES
T ss_pred             EEEeC
Confidence            99874

Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....

>PRK05713 hypothetical protein; Provisional

Probab=99.58  E-value=3e-15  Score=134.22  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=66.5

Q ss_pred             CCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeeeE
Q psy1437         124 KDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQII  203 (232)
Q Consensus       124 ~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~~  203 (232)
                      ++|++  |.+.+|+|||++|+++||++++.|+ .|.||+|+|+|.+|.++.    .  ....|+ ..++.+|+||+||+.
T Consensus         6 ~~~~~--~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~~----~--~~~~l~-~~~~~~g~~L~C~~~   75 (312)
T PRK05713          6 VGERR--WSVPAGSNLLDALNAAGVAVPYSCR-AGSCHACLVRCLQGEPED----A--LPEALA-AEKREQGWRLACQCR   75 (312)
T ss_pred             cCCeE--EEECCCCcHHHHHHHcCCCCCcCCC-CcCCCCCeEEEEeCcccc----C--ccccCC-HHHHhCCeEEEeECE
Confidence            45754  9999999999999999999999999 699999999999996431    1  113443 356788999999999


Q ss_pred             EecCCCceEEEec
Q psy1437         204 LTKELEGIEVTLP  216 (232)
Q Consensus       204 ~~~dl~g~~V~lp  216 (232)
                      +.+|   ++|+++
T Consensus        76 ~~~d---~~i~~~   85 (312)
T PRK05713         76 VVGD---LRVEVF   85 (312)
T ss_pred             ECCc---eEEEec
Confidence            9998   999986

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.49  E-value=7.4e-14  Score=126.84  Aligned_cols=90  Identities=22%  Similarity=0.296  Sum_probs=70.7

Q ss_pred             ceeEEEEEeCCCCEEE-EEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437         115 EIVNITFIDKDGKRRE-IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK  193 (232)
Q Consensus       115 ~mv~Vt~~~~~G~~~~-v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~  193 (232)
                      ...+|+|. .+|..+. +.+.+|+|||++++++||+++++|+ .|.||+|++++++|.+..      .+...|+ ..++.
T Consensus       261 ~~~~v~~~-~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~~------~~~~~l~-~~~~~  331 (352)
T TIGR02160       261 DVSKVTVT-LDGRSTETSSLSRDESVLDAALRARPDLPFACK-GGVCGTCRAKVLEGKVDM------ERNYALE-PDEVD  331 (352)
T ss_pred             CceEEEEE-ECCceEEEEecCCCCcHHHHHHHcCCCCcCCCC-CccCCCCEEEEecccccc------ccccCCC-HHHHh
Confidence            34678875 5676643 6789999999999999999999999 599999999999997532      1122354 35678


Q ss_pred             CCcEEeeeeEEecCCCceEEEe
Q psy1437         194 DNSRLGCQIILTKELEGIEVTL  215 (232)
Q Consensus       194 ~g~RLaCQ~~~~~dl~g~~V~l  215 (232)
                      +|++|+||+++.+|  .++|.+
T Consensus       332 ~g~~l~C~~~~~~~--~~~~~~  351 (352)
T TIGR02160       332 AGYVLTCQAYPLSD--KLVVDY  351 (352)
T ss_pred             CCcEEEeeEEECCC--cEEEec
Confidence            89999999999876  577653

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.48  E-value=1e-13  Score=125.17  Aligned_cols=86  Identities=16%  Similarity=0.264  Sum_probs=69.0

Q ss_pred             CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437         114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK  193 (232)
Q Consensus       114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~  193 (232)
                      +..++|++. ..|+  ++.+.+|+|||++|+++||+++++|+ .|.||+|++++++|.+...    .  ...|+ ..++.
T Consensus       246 ~~~~~v~~~-~~~~--~~~~~~~~~lL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~~~----~--~~~l~-~~~~~  314 (332)
T PRK10684        246 TSGLTFTKL-QPAR--EFYAPVGTTLLEALESNKVPVVAACR-AGVCGCCKTKVVSGEYTVS----S--TMTLT-PAEIA  314 (332)
T ss_pred             CCceEEEEe-cCCE--EEEeCCCChHHHHHHHcCCCccCCCC-CcCCCCCEEEEecCccccc----c--cccCC-HHHHh
Confidence            335678875 4554  58889999999999999999999999 8999999999999975421    1  13454 35678


Q ss_pred             CCcEEeeeeEEecCCCceEE
Q psy1437         194 DNSRLGCQIILTKELEGIEV  213 (232)
Q Consensus       194 ~g~RLaCQ~~~~~dl~g~~V  213 (232)
                      +|++|+||+++.+|   ++|
T Consensus       315 ~g~~l~C~~~~~~d---~~i  331 (332)
T PRK10684        315 QGYVLACSCHPQGD---LVL  331 (332)
T ss_pred             CCcEEEeeCEECCC---eEE
Confidence            99999999999998   766

>KOG4509|consensus

Probab=99.31  E-value=4.9e-12  Score=103.93  Aligned_cols=83  Identities=13%  Similarity=0.105  Sum_probs=75.7

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SS-SDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLC   80 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~-~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~~~~s   80 (232)
                      ++.+|..++.+||+.|++|+|..|+-||+++|+++.++++ .+ +...+-.|+.|++.||+||+.|+++|+.++++|+++
T Consensus        11 ~~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqekEdgk~~   90 (247)
T KOG4509|consen   11 LLKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQEKEDGKTH   90 (247)
T ss_pred             hhhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchh
Confidence            3567888999999999999999999999999999999995 34 566677899999999999999999999999999999


Q ss_pred             CCCcc
Q psy1437          81 KLPPV   85 (232)
Q Consensus        81 ~~~~~   85 (232)
                      +|+.|
T Consensus        91 eQ~KI   95 (247)
T KOG4509|consen   91 EQIKI   95 (247)
T ss_pred             hhhhh
Confidence            99986

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.87  E-value=2.4e-09  Score=78.17  Aligned_cols=70  Identities=26%  Similarity=0.388  Sum_probs=46.3

Q ss_pred             CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC---------CcccccCEEEEecCCccCCCCCChhHHh
Q psy1437         114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA---------SLACTTCHVYVKHEYLDALPPAEEKEDD  184 (232)
Q Consensus       114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG---------~G~CgtC~v~v~~g~~~~l~~~~~~E~~  184 (232)
                      |++|+|+|   +|+.  +++.+|+|||+++.++|+.+|+.|..         .|.|+.|.|.|. |.             
T Consensus         1 ~~~v~i~i---dG~~--v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g~-------------   61 (82)
T PF13510_consen    1 DKMVTITI---DGKP--VEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-GE-------------   61 (82)
T ss_dssp             -EEEEEEE---TTEE--EEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-SE-------------
T ss_pred             CCEEEEEE---CCEE--EEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-CC-------------
Confidence            35677775   6866  88899999999999999999999974         499999999995 21             


Q ss_pred             hcCCcCCCCCCcEEeeeeEEecCCCceEEEe
Q psy1437         185 LLDLAPFLKDNSRLGCQIILTKELEGIEVTL  215 (232)
Q Consensus       185 ~L~~~~~~~~g~RLaCQ~~~~~dl~g~~V~l  215 (232)
                                ....||++.+..   ||+|.-
T Consensus        62 ----------~~v~AC~t~v~~---GM~V~T   79 (82)
T PF13510_consen   62 ----------PNVRACSTPVED---GMVVET   79 (82)
T ss_dssp             ----------EEEETTT-B--T---TEEEE-
T ss_pred             ----------cceEcccCCCcC---CcEEEE
Confidence                      125789998886   488863

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=98.82  E-value=7.6e-09  Score=89.53  Aligned_cols=71  Identities=21%  Similarity=0.393  Sum_probs=56.1

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP  190 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~  190 (232)
                      ||+|+   .+|+.  |.+++|+|||++|+++|+++|+.|.     +.|.|+.|.|.|. |.                   
T Consensus         3 ~v~i~---idg~~--~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~-g~-------------------   57 (234)
T PRK07569          3 VKTLT---IDDQL--VSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIE-GS-------------------   57 (234)
T ss_pred             eEEEE---ECCEE--EEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEEC-CC-------------------
Confidence            35555   37866  9999999999999999999999997     5799999999993 41                   


Q ss_pred             CCCCCcEEeeeeEEecCCCceEEEecC
Q psy1437         191 FLKDNSRLGCQIILTKELEGIEVTLPK  217 (232)
Q Consensus       191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp~  217 (232)
                         .+.+.||++.+..   ||+|..-.
T Consensus        58 ---~~~~~aC~t~v~~---Gm~v~t~~   78 (234)
T PRK07569         58 ---NKLLPACVTPVAE---GMVVQTNT   78 (234)
T ss_pred             ---CccccCcCCCCCC---CCEEEECC
Confidence               1335589998886   48887653

>PRK08166 NADH dehydrogenase subunit G; Validated

Probab=98.59  E-value=9.7e-08  Score=96.35  Aligned_cols=76  Identities=21%  Similarity=0.265  Sum_probs=61.4

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP  190 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~  190 (232)
                      |++|++   +|+.  +++++|+|||++|+++||.+|+.|.     ..|.|+.|+|+|.+|..                  
T Consensus         1 ~~~i~i---dg~~--~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~------------------   57 (847)
T PRK08166          1 MATIHV---DGKE--YEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE------------------   57 (847)
T ss_pred             CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc------------------
Confidence            677775   5865  8889999999999999999999996     36999999999997721                  


Q ss_pred             CCCCCcEEeeeeEEecCCCceEEEecC
Q psy1437         191 FLKDNSRLGCQIILTKELEGIEVTLPK  217 (232)
Q Consensus       191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp~  217 (232)
                      +..++.++||++.+..   ||+|....
T Consensus        58 ~~~~~~~~aC~~~v~~---gm~v~t~~   81 (847)
T PRK08166         58 DTRGRLVMSCMTPATD---GTFISIDD   81 (847)
T ss_pred             cCCCCcccCcCCCCCC---CCEEEeCC
Confidence            1234678899888776   49998754

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional

Probab=98.10  E-value=5.2e-06  Score=73.66  Aligned_cols=47  Identities=19%  Similarity=0.282  Sum_probs=39.4

Q ss_pred             eEEEEEeCCCCEEEEEe-cCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEe
Q psy1437         117 VNITFIDKDGKRREIKG-KVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVK  168 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~-~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~  168 (232)
                      ++|+   .||+.  |++ ++|+|||++|+++||.||+.|-     -.|.|..|.|.|.
T Consensus        69 ~~I~---IDGk~--VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVe  121 (297)
T PTZ00305         69 AIMF---VNKRP--VEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVD  121 (297)
T ss_pred             eEEE---ECCEE--EEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEEC
Confidence            4455   37865  998 8999999999999999999993     2488999999983

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

Probab=98.07  E-value=4.8e-06  Score=79.14  Aligned_cols=60  Identities=20%  Similarity=0.333  Sum_probs=49.0

Q ss_pred             EEEEecCCchHHHHHHH------CCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         129 REIKGKVGDNVLYLAHR------YEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       129 ~~v~~~~G~tLL~aa~~------~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      ++|.+++|+|||+++++      .++..++.|+ .|.||+|.|.| +|.                        .+|+|++
T Consensus        23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G~------------------------~~laC~~   76 (486)
T PRK06259         23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCGSCAVTI-NGE------------------------PVLACKT   76 (486)
T ss_pred             EEEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCCCCEEEE-CCe------------------------Eeccccc
Confidence            45667799999999995      5666789998 79999999996 552                        2789999


Q ss_pred             EEecCCCceEEEecC
Q psy1437         203 ILTKELEGIEVTLPK  217 (232)
Q Consensus       203 ~~~~dl~g~~V~lp~  217 (232)
                      .+.++   ++|+.+.
T Consensus        77 ~~~~~---~~i~~~~   88 (486)
T PRK06259         77 EVEDG---MIIEPLD   88 (486)
T ss_pred             CCCCC---CEEEecC
Confidence            99876   9999764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.86  E-value=2e-05  Score=77.58  Aligned_cols=71  Identities=20%  Similarity=0.382  Sum_probs=54.5

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP  190 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~  190 (232)
                      +++|+   .+|+.  +++++|+|||++++++|+.+|..|.     +.|.|+.|.|.|. |.                   
T Consensus         3 ~v~~~---idg~~--~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~-g~-------------------   57 (652)
T PRK12814          3 TISLT---INGRS--VTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIK-GK-------------------   57 (652)
T ss_pred             eEEEE---ECCEE--EEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEEC-CC-------------------
Confidence            35555   46865  8999999999999999999999997     3799999999883 31                   


Q ss_pred             CCCCCcEEeeeeEEecCCCceEEEecC
Q psy1437         191 FLKDNSRLGCQIILTKELEGIEVTLPK  217 (232)
Q Consensus       191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp~  217 (232)
                         .+..+||++.+..   ||+|+...
T Consensus        58 ---~~~~~aC~t~~~~---Gm~v~t~~   78 (652)
T PRK12814         58 ---NRFVPACSTAVSE---GMVIETEN   78 (652)
T ss_pred             ---cceecCcCCCCCC---CCEEEeCc
Confidence               0124588888865   58887643

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional

Probab=97.82  E-value=5.8e-05  Score=61.63  Aligned_cols=52  Identities=19%  Similarity=0.359  Sum_probs=44.5

Q ss_pred             ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCC-CccCCCCCCcccccCEEEEe
Q psy1437         115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVK  168 (232)
Q Consensus       115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi-~l~~~CgG~G~CgtC~v~v~  168 (232)
                      ++..|+|. .+|+.+++.+.++++||+.+++.|+ .....|+ .|.||.|-|.|.
T Consensus         5 ~~~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~-~G~CGACtVlvd   57 (159)
T PRK09908          5 ETITIECT-INGMPFQLHAAPGTPLSELLREQGLLSVKQGCC-VGECGACTVLVD   57 (159)
T ss_pred             CceeEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcC-CCCCCCcEEEEC
Confidence            34567765 6899999999999999999999887 4789998 799999999984

>PRK08493 NADH dehydrogenase subunit G; Validated

Probab=97.82  E-value=2.8e-05  Score=78.16  Aligned_cols=68  Identities=25%  Similarity=0.512  Sum_probs=53.4

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP  190 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C-----gG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~  190 (232)
                      |++|++   +|+.  +++++|+|||++|+++||.+|+.|     ...|.|+.|.|.|. |.                  .
T Consensus         1 mv~i~I---dG~~--v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~-G~------------------~   56 (819)
T PRK08493          1 MITITI---NGKE--CEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEAD-GK------------------R   56 (819)
T ss_pred             CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEEC-CE------------------E
Confidence            566764   6866  888999999999999999999877     44689999999983 31                  0


Q ss_pred             CCCCCcEEeeeeEEecCCCceEEEec
Q psy1437         191 FLKDNSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                            .+||++.+..   ||+|..-
T Consensus        57 ------~~AC~t~v~d---GM~V~T~   73 (819)
T PRK08493         57 ------VYSCNTKAKE---GMNILTN   73 (819)
T ss_pred             ------eccccCCCCC---CCEEEec
Confidence                  4589888863   6888753

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=97.81  E-value=4.1e-05  Score=77.12  Aligned_cols=72  Identities=25%  Similarity=0.431  Sum_probs=56.3

Q ss_pred             CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCC
Q psy1437         114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDL  188 (232)
Q Consensus       114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~  188 (232)
                      .+|++|+|   ||+.  +++++|+|||++|..+||+||+.|.     ..|.|.-|.|.|. |.                 
T Consensus         2 ~~~v~~~i---dg~~--~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~-g~-----------------   58 (797)
T PRK07860          2 PDLVTLTI---DGVE--VSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVE-GQ-----------------   58 (797)
T ss_pred             CceEEEEE---CCEE--EEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEEC-CC-----------------
Confidence            45788875   6866  9999999999999999999999995     3689999999993 31                 


Q ss_pred             cCCCCCCcEEeeeeEEecCCCceEEEec
Q psy1437         189 APFLKDNSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       189 ~~~~~~g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                           ...+-||.+.+..   ||+|+--
T Consensus        59 -----~~~~~aC~t~v~~---gm~V~t~   78 (797)
T PRK07860         59 -----RKPQASCTTTVTD---GMVVKTQ   78 (797)
T ss_pred             -----cccccccCCCCCC---CcEEEeC
Confidence                 0113488887775   5888763

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B

Probab=97.80  E-value=3.2e-05  Score=59.55  Aligned_cols=62  Identities=21%  Similarity=0.365  Sum_probs=44.8

Q ss_pred             EEEEecCCchHHHHHHHC------CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         129 REIKGKVGDNVLYLAHRY------EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       129 ~~v~~~~G~tLL~aa~~~------gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      ++|.+.+|.|+|+++..-      -+...++|+ .|.||+|.++|- |.                        .||||.+
T Consensus        21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr-~giCGsCam~IN-G~------------------------~~LAC~t   74 (110)
T PF13085_consen   21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCR-SGICGSCAMRIN-GR------------------------PRLACKT   74 (110)
T ss_dssp             EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSS-SSSSSTTEEEET-TE------------------------EEEGGGS
T ss_pred             EEecCCCCCcHHHHHHHHHhccCCCeEEEecCC-CCCCCCCEEEEC-Cc------------------------eecceee
Confidence            568889999999998732      355679998 799999999983 41                        1899999


Q ss_pred             EEecCCCc----eEEEec
Q psy1437         203 ILTKELEG----IEVTLP  216 (232)
Q Consensus       203 ~~~~dl~g----~~V~lp  216 (232)
                      .+....++    ++|+-.
T Consensus        75 ~v~~~~~~~~~~i~IePL   92 (110)
T PF13085_consen   75 QVDDLIEKFGNVITIEPL   92 (110)
T ss_dssp             BGGGCTTSETBEEEEEES
T ss_pred             EchhccCCCcceEEEEEC
Confidence            99876543    666633

...

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=97.75  E-value=4.8e-05  Score=66.57  Aligned_cols=62  Identities=18%  Similarity=0.321  Sum_probs=44.6

Q ss_pred             EEEEEecCCchHHHHHHHCC-------------CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437         128 RREIKGKVGDNVLYLAHRYE-------------IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD  194 (232)
Q Consensus       128 ~~~v~~~~G~tLL~aa~~~g-------------i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~  194 (232)
                      +++|++.+|.|||+++..-.             +...++|+ .|.||+|.++|- |.                       
T Consensus        24 ~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~IN-G~-----------------------   78 (249)
T PRK08640         24 EFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVIN-GK-----------------------   78 (249)
T ss_pred             EEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEEC-Cc-----------------------
Confidence            35677789999999987421             44568999 799999999984 42                       


Q ss_pred             CcEEeeeeEEecCC-CceEEEec
Q psy1437         195 NSRLGCQIILTKEL-EGIEVTLP  216 (232)
Q Consensus       195 g~RLaCQ~~~~~dl-~g~~V~lp  216 (232)
                       -||||++.+.. + +.++|+-.
T Consensus        79 -p~LAC~t~v~~-~~~~i~iePl   99 (249)
T PRK08640         79 -PRQACTALIDQ-LEQPIRLEPM   99 (249)
T ss_pred             -cchhhhChHHH-cCCcEEEEEC
Confidence             16899888742 3 34677643

>PRK09130 NADH dehydrogenase subunit G; Validated

Probab=97.74  E-value=5e-05  Score=75.28  Aligned_cols=49  Identities=27%  Similarity=0.379  Sum_probs=42.6

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEec
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKH  169 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~  169 (232)
                      |++|++   ||+.  |++++|+|||++++++||.||+.|-     -.|.|..|.|.|..
T Consensus         1 m~~~~I---dg~~--v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~   54 (687)
T PRK09130          1 MVKLKV---DGKE--IEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKG   54 (687)
T ss_pred             CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECC
Confidence            677775   6865  9999999999999999999999993     35899999999964

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

Probab=97.70  E-value=4.7e-05  Score=75.10  Aligned_cols=50  Identities=36%  Similarity=0.527  Sum_probs=42.9

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCCcccccCEEEEecC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHE  170 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C-----gG~G~CgtC~v~v~~g  170 (232)
                      |++|++   ||+.  ++++.|+|||++|+++||+||+.|     +-.|.|..|.|.+..+
T Consensus         1 m~tI~I---DG~e--i~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~   55 (693)
T COG1034           1 MVTITI---DGKE--IEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGA   55 (693)
T ss_pred             CeEEEE---CCEE--EecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCC
Confidence            677774   6866  999999999999999999999998     4458999999999754

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional

Probab=97.67  E-value=7.6e-05  Score=64.94  Aligned_cols=62  Identities=13%  Similarity=0.342  Sum_probs=44.6

Q ss_pred             EEEEEecCCchHHHHHHHCC------CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeee
Q psy1437         128 RREIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQ  201 (232)
Q Consensus       128 ~~~v~~~~G~tLL~aa~~~g------i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ  201 (232)
                      .++|.+.+|.|||+++..-.      +...++|+ .|.||+|.+.|- |.                        -||||+
T Consensus        25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr-~giCGsCam~IN-G~------------------------~~LAC~   78 (239)
T PRK13552         25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCR-AGICGSCAMVIN-GR------------------------PTLACR   78 (239)
T ss_pred             EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCC-CCCCCCceeEEC-Ce------------------------Ehhhhh
Confidence            35677889999999988532      44568999 799999999983 42                        178888


Q ss_pred             eEEecCCC-ceEEEe
Q psy1437         202 IILTKELE-GIEVTL  215 (232)
Q Consensus       202 ~~~~~dl~-g~~V~l  215 (232)
                      +.+.+--+ +++|+-
T Consensus        79 t~v~~~~~~~i~ieP   93 (239)
T PRK13552         79 TLTSDYPDGVITLMP   93 (239)
T ss_pred             ccHhhcCCCcEEEEE
Confidence            87764211 466663

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=97.63  E-value=0.00017  Score=65.52  Aligned_cols=40  Identities=15%  Similarity=0.420  Sum_probs=34.6

Q ss_pred             EEEEEecCCchHHHHHHHCCCCcc------CCCCCCcccccCEEEEe
Q psy1437         128 RREIKGKVGDNVLYLAHRYEIPME------GACEASLACTTCHVYVK  168 (232)
Q Consensus       128 ~~~v~~~~G~tLL~aa~~~gi~l~------~~CgG~G~CgtC~v~v~  168 (232)
                      .++|.+.+|.|||+++...++.++      .+|+ .|.||+|.|.|-
T Consensus        20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~in   65 (329)
T PRK12577         20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRIN   65 (329)
T ss_pred             EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEEC
Confidence            367888999999999999998874      5688 699999999993

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=97.61  E-value=0.00056  Score=49.56  Aligned_cols=40  Identities=25%  Similarity=0.228  Sum_probs=37.6

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA   41 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~   41 (232)
                      +....|.+++.+|+..|..|.-++|+.+|+.|++.|...+
T Consensus         3 ~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~   42 (79)
T cd02679           3 GYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGI   42 (79)
T ss_pred             hHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999999999999987

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PRK09129 NADH dehydrogenase subunit G; Validated

Probab=97.60  E-value=0.00011  Score=73.81  Aligned_cols=70  Identities=26%  Similarity=0.418  Sum_probs=53.5

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----CcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA-----SLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP  190 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG-----~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~  190 (232)
                      |++|+|   ||+.  +++++|+|||++++.+||.||+.|--     .|.|..|.|.|. |.                   
T Consensus         1 m~~~~i---dg~~--~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~-~~-------------------   55 (776)
T PRK09129          1 MVEIEI---DGKK--VEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVE-KA-------------------   55 (776)
T ss_pred             CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEEC-CC-------------------
Confidence            667774   6866  88899999999999999999999962     378999999984 31                   


Q ss_pred             CCCCCcEEeeeeEEecCCCceEEEec
Q psy1437         191 FLKDNSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                         ...+.||.+.+..   ||+|..-
T Consensus        56 ---~~~~~aC~~~~~~---gm~v~t~   75 (776)
T PRK09129         56 ---PKPLPACATPVTD---GMKVFTR   75 (776)
T ss_pred             ---CCcCcccCCCCCC---CCEEEcC
Confidence               0124578887775   4777653

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional

Probab=97.54  E-value=0.00024  Score=60.75  Aligned_cols=51  Identities=18%  Similarity=0.369  Sum_probs=41.2

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEecC
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKHE  170 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~~g  170 (232)
                      ..|+|. .+|+.+++.+.++.+||++++++ ++ .....|+ .|.||.|.|.| +|
T Consensus        50 ~~i~~~-VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~-~G~CGACTVlV-dG  102 (217)
T PRK11433         50 SPVTLK-VNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCD-HGQCGACTVLV-NG  102 (217)
T ss_pred             ceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCC-CCCcCceEEEE-CC
Confidence            446654 67988889999999999999985 44 3678898 69999999955 56

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

Probab=97.46  E-value=0.00023  Score=62.31  Aligned_cols=58  Identities=14%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             EEEE-ecCCchHHHHHHHC----------CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcE
Q psy1437         129 REIK-GKVGDNVLYLAHRY----------EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR  197 (232)
Q Consensus       129 ~~v~-~~~G~tLL~aa~~~----------gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~R  197 (232)
                      ++|. +.+|.|||+++..-          .+...++|+ .|.||+|.+.|- |. .           .|      ...-|
T Consensus        22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~IN-G~-p-----------~~------~~~~~   81 (250)
T PRK07570         22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVIN-GR-P-----------HG------PDRGT   81 (250)
T ss_pred             EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEEC-Cc-c-----------CC------CCccc
Confidence            4565 56899999999732          255679999 799999999984 42 1           11      12338


Q ss_pred             EeeeeEEec
Q psy1437         198 LGCQIILTK  206 (232)
Q Consensus       198 LaCQ~~~~~  206 (232)
                      |||++.+..
T Consensus        82 LAC~t~~~~   90 (250)
T PRK07570         82 TTCQLHMRS   90 (250)
T ss_pred             chhhhhhhh
Confidence            999987653

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=97.45  E-value=0.00019  Score=70.15  Aligned_cols=65  Identities=25%  Similarity=0.446  Sum_probs=51.1

Q ss_pred             CCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEe
Q psy1437         125 DGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLG  199 (232)
Q Consensus       125 ~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLa  199 (232)
                      ||+.  +++++|+|||++|+++||++|+.|.     ..|.|..|.|.|. |. .          .          ....|
T Consensus         4 dg~~--~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~-g~-~----------~----------~~~~a   59 (603)
T TIGR01973         4 DGKE--LEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE-KF-P----------D----------KPVAS   59 (603)
T ss_pred             CCEE--EEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC-CC-C----------C----------Ccccc
Confidence            6865  9999999999999999999999994     3689999999984 31 0          0          12458


Q ss_pred             eeeEEecCCCceEEEec
Q psy1437         200 CQIILTKELEGIEVTLP  216 (232)
Q Consensus       200 CQ~~~~~dl~g~~V~lp  216 (232)
                      |++.+..   ||+|..-
T Consensus        60 C~~~~~~---gm~v~t~   73 (603)
T TIGR01973        60 CATPVTD---GMKISTN   73 (603)
T ss_pred             cCCCCCC---CCEEEeC
Confidence            8888876   5888753

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit

Probab=97.42  E-value=0.0003  Score=62.42  Aligned_cols=59  Identities=17%  Similarity=0.376  Sum_probs=41.2

Q ss_pred             EEEecC-CchHHHHHHHC--C----CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         130 EIKGKV-GDNVLYLAHRY--E----IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       130 ~v~~~~-G~tLL~aa~~~--g----i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      +|.+.+ |.|+|+++..-  .    +...++|+ .|.||+|.+.|- |.                        -||||++
T Consensus        65 ~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~IN-G~------------------------p~LAC~t  118 (276)
T PLN00129         65 KVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNID-GK------------------------NTLACLT  118 (276)
T ss_pred             EeCCCCCCchHHHHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEEC-Cc------------------------ccccccc
Confidence            444444 78999998752  1    34568999 799999999983 41                        2789998


Q ss_pred             EEecCC-CceEEE
Q psy1437         203 ILTKEL-EGIEVT  214 (232)
Q Consensus       203 ~~~~dl-~g~~V~  214 (232)
                      .+.+.. +.++|+
T Consensus       119 ~v~~~~~~~i~ie  131 (276)
T PLN00129        119 KIDRDESGPTTIT  131 (276)
T ss_pred             cHhhcCCCcEEEE
Confidence            887542 235666

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional

Probab=97.42  E-value=0.00022  Score=62.27  Aligned_cols=61  Identities=18%  Similarity=0.370  Sum_probs=43.1

Q ss_pred             EEEEecCCchHHHHHHHC------CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         129 REIKGKVGDNVLYLAHRY------EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       129 ~~v~~~~G~tLL~aa~~~------gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      +.|.+.+|.|||+++...      .+...++|+ .|.||+|.|.|- |.                        .+|||++
T Consensus        27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~In-G~------------------------~~laC~t   80 (244)
T PRK12385         27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVN-NV------------------------PKLACKT   80 (244)
T ss_pred             EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCC-CCcCCCCcceEC-cc------------------------ChhhHhh
Confidence            567778999999999653      233457998 699999999995 41                        0567877


Q ss_pred             EEecCCCceEEEe
Q psy1437         203 ILTKELEGIEVTL  215 (232)
Q Consensus       203 ~~~~dl~g~~V~l  215 (232)
                      .+..--++++|+-
T Consensus        81 ~~~~~~~~~~ieP   93 (244)
T PRK12385         81 FLRDYTGGMKVEA   93 (244)
T ss_pred             HHHHcCCCeEEee
Confidence            7664223577763

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein

Probab=97.39  E-value=0.00014  Score=62.37  Aligned_cols=41  Identities=20%  Similarity=0.398  Sum_probs=32.8

Q ss_pred             EEEEEecCCchHHHHHHHCC------CCccCCCCCCcccccCEEEEecC
Q psy1437         128 RREIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHE  170 (232)
Q Consensus       128 ~~~v~~~~G~tLL~aa~~~g------i~l~~~CgG~G~CgtC~v~v~~g  170 (232)
                      .+++++.+|+|||+++...+      +....+|+ .|.||+|.|.| +|
T Consensus        16 ~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~v-nG   62 (220)
T TIGR00384        16 SYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICGSCAMNV-NG   62 (220)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCCCCeeEE-CC
Confidence            35677889999999999855      33458897 79999999987 45

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=97.35  E-value=0.00027  Score=69.58  Aligned_cols=51  Identities=27%  Similarity=0.557  Sum_probs=43.0

Q ss_pred             CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCCcccccCEEEEecC
Q psy1437         114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHE  170 (232)
Q Consensus       114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C-----gG~G~CgtC~v~v~~g  170 (232)
                      .+|++|++   +|+.  +.+++|+|||+++.++||.+|+.|     +--++|-+|.|.+ +|
T Consensus         3 ~~~i~vti---dg~~--~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG   58 (978)
T COG3383           3 EKMITVTI---DGRS--IEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DG   58 (978)
T ss_pred             ceeEEEEE---CCeE--EecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cC
Confidence            45788885   5866  889999999999999999999999     3348999999995 45

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit

Probab=97.34  E-value=0.00046  Score=55.78  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             CCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEe
Q psy1437         124 KDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK  168 (232)
Q Consensus       124 ~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~  168 (232)
                      .+|+.++++++++++|++.+++. |+ .....|+ .|.||.|-|.|.
T Consensus         6 vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~-~G~CGACtVlvd   51 (148)
T TIGR03193         6 VNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCD-GGECGACTVLVD   51 (148)
T ss_pred             ECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCC-CCCCCCCEEEEC
Confidence            47888899999999999999984 65 3788998 799999999993

4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

Probab=97.05  E-value=0.0013  Score=57.01  Aligned_cols=60  Identities=22%  Similarity=0.426  Sum_probs=42.8

Q ss_pred             EEEEecCCchHHHHHHHC------CCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         129 REIKGKVGDNVLYLAHRY------EIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       129 ~~v~~~~G~tLL~aa~~~------gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      ++|...+|.|||+++..-      .+...++|+ .|.||+|-+.|- |.                        .||||.+
T Consensus        22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~IN-G~------------------------prLAC~t   75 (234)
T COG0479          22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCR-EGICGSCAMNIN-GK------------------------PRLACKT   75 (234)
T ss_pred             EEecCCCCCcHHHHHHHHHHhcCCccchhhhcc-CCcCCcceeEEC-Cc------------------------cccchhc
Confidence            456666999999998742      244679999 699999999883 41                        1688888


Q ss_pred             EEecCCCc-eEEE
Q psy1437         203 ILTKELEG-IEVT  214 (232)
Q Consensus       203 ~~~~dl~g-~~V~  214 (232)
                      .+.+-.++ ++|+
T Consensus        76 ~~~~~~~~~i~ie   88 (234)
T COG0479          76 LMKDLEEGVITIE   88 (234)
T ss_pred             hhhhccCCceEEE
Confidence            77654343 5555

>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=97.03  E-value=0.0023  Score=56.96  Aligned_cols=55  Identities=15%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             CceeEEEEEeCCC------CEEEEEecCCchHHHHHHHCCCCc------cCCCCCCcccccCEEEEecC
Q psy1437         114 DEIVNITFIDKDG------KRREIKGKVGDNVLYLAHRYEIPM------EGACEASLACTTCHVYVKHE  170 (232)
Q Consensus       114 ~~mv~Vt~~~~~G------~~~~v~~~~G~tLL~aa~~~gi~l------~~~CgG~G~CgtC~v~v~~g  170 (232)
                      +.+++|.+.-.+.      +.++|++.+|.|||+++...+..+      .++|+ .|.||+|.|.| +|
T Consensus         6 ~~~~~~~i~R~~~~~~~~~~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~I-NG   72 (279)
T PRK12576          6 EKEVIFKVKRYDPEKGSWWQEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCGSCGMKI-NG   72 (279)
T ss_pred             CcEEEEEEEecCCCCCCeEEEEEEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCCCCEEEE-CC
Confidence            4456666543222      336788899999999999977543      37897 89999999999 45

>TIGR03198 pucE xanthine dehydrogenase E subunit

Probab=96.97  E-value=0.0018  Score=52.53  Aligned_cols=48  Identities=17%  Similarity=0.367  Sum_probs=39.7

Q ss_pred             EEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         119 ITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      |+|. -+|+.+++.+.++.+|++.+++. |+. ....|+ .|.||.|.|.|.
T Consensus         4 i~f~-vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~-~G~CGACtVlvd   53 (151)
T TIGR03198         4 FRFT-VNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCG-IGRCGACSVLID   53 (151)
T ss_pred             EEEE-ECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCC-CCcCCccEEEEC
Confidence            4443 57988889999999999999985 764 678898 799999999994

This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.

>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]

Probab=96.95  E-value=0.0021  Score=52.22  Aligned_cols=49  Identities=20%  Similarity=0.370  Sum_probs=40.4

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHH-CCCC-ccCCCCCCcccccCEEEEe
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHR-YEIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~-~gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      .|+|. .+|+.+++.+.++.+|++++++ -|+. ....|+ .|.||.|-|.|.
T Consensus         3 ~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~-~g~CGACtVlvD   53 (156)
T COG2080           3 PITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG-HGQCGACTVLVD   53 (156)
T ss_pred             cEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCC-CccCCceEEEEC
Confidence            35543 5799999999999999999995 4554 678997 899999999885

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional

Probab=96.94  E-value=0.0023  Score=56.13  Aligned_cols=40  Identities=20%  Similarity=0.447  Sum_probs=33.9

Q ss_pred             EEEEEecCCchHHHHHHHCCC------CccCCCCCCcccccCEEEEe
Q psy1437         128 RREIKGKVGDNVLYLAHRYEI------PMEGACEASLACTTCHVYVK  168 (232)
Q Consensus       128 ~~~v~~~~G~tLL~aa~~~gi------~l~~~CgG~G~CgtC~v~v~  168 (232)
                      .++|.+.+|.|||++++.-+.      ...++|+ .|.||+|.|.|-
T Consensus        21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~In   66 (251)
T PRK12386         21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEIN   66 (251)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCC-CCcCCCCEEEEC
Confidence            467888899999999998664      4568998 799999999984

>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=96.74  E-value=0.0014  Score=56.99  Aligned_cols=62  Identities=15%  Similarity=0.206  Sum_probs=41.8

Q ss_pred             EEEEecC-CchHHHHHHHCC-----CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         129 REIKGKV-GDNVLYLAHRYE-----IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       129 ~~v~~~~-G~tLL~aa~~~g-----i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      ++|.+.+ +.|+|+++..-.     +...++|+ .|.||+|.+.|- |.                        -||||++
T Consensus        25 y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr-~giCGsCa~~iN-G~------------------------~~LaC~t   78 (235)
T PRK12575         25 YEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCR-EGICGSDAMNIN-GR------------------------NGLACLT   78 (235)
T ss_pred             EEecCCCCCCcHHHHHHHHHhcCCCeeeeccCC-CCCCCCCeeEEC-Ce------------------------EcchhhC
Confidence            3454444 458999887532     33568999 799999999983 41                        2789998


Q ss_pred             EEecCCCceEEEec
Q psy1437         203 ILTKELEGIEVTLP  216 (232)
Q Consensus       203 ~~~~dl~g~~V~lp  216 (232)
                      .+.+--++++|+-.
T Consensus        79 ~~~~~~~~i~iePl   92 (235)
T PRK12575         79 NMQALPREIVLRPL   92 (235)
T ss_pred             cHhHcCCCEEEeEC
Confidence            88742235777643

>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=96.50  E-value=0.0049  Score=53.23  Aligned_cols=41  Identities=15%  Similarity=0.172  Sum_probs=33.4

Q ss_pred             EEEEEec-CCchHHHHHHHCC-CCc-----cCCCCCCcccccCEEEEecC
Q psy1437         128 RREIKGK-VGDNVLYLAHRYE-IPM-----EGACEASLACTTCHVYVKHE  170 (232)
Q Consensus       128 ~~~v~~~-~G~tLL~aa~~~g-i~l-----~~~CgG~G~CgtC~v~v~~g  170 (232)
                      .++|.+. +|.|||+++...+ ..+     ..+|+ .|.||+|.|.| +|
T Consensus        19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~v-nG   66 (232)
T PRK05950         19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNI-NG   66 (232)
T ss_pred             EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCC-CCCCCCCEEEE-CC
Confidence            3568888 9999999999997 333     47896 69999999999 45

>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8)

Probab=96.37  E-value=0.021  Score=43.90  Aligned_cols=71  Identities=15%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c--c--CChHHHHH--HHHHHHHH-HHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N--S--SSDENVAA--WRQKAQQY-LNRAEVLKDKIQVMF   74 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~--e--~~~~~~~~--~~~k~~eY-~~RaE~lk~~~~~~~   74 (232)
                      ++..|..+.++|..+..+|+.+.|+.+|...+.++ ..+ .  +  ++......  ...+..+- ++++|.||..|...-
T Consensus        34 y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~Hpdy~~~~~~~~~~~~~~~~~~~il~~lE~Lk~~L~~rY  112 (115)
T PF08969_consen   34 YLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPKHPDYKKDKNSYKKLLGKKKLNEVILEELEKLKPSLKERY  112 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCCSCCCCCTHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999988 655 3  2  22232222  23445555 799999999997653

It has no known function. ; PDB: 2XZE_B 2A9U_A.

>PRK09800 putative hypoxanthine oxidase; Provisional

Probab=95.86  E-value=0.016  Score=59.65  Aligned_cols=49  Identities=16%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             EEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEe
Q psy1437         119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      |+|. -+|+.+++++.++++||+.+++.|+. ....|.+.|.||.|-|.|.
T Consensus         3 i~~~-vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~d   52 (956)
T PRK09800          3 IHFT-LNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFN   52 (956)
T ss_pred             EEEE-ECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEEC
Confidence            5553 57998899999999999999996654 3444334899999999984

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit

Probab=95.82  E-value=0.012  Score=56.01  Aligned_cols=44  Identities=16%  Similarity=0.302  Sum_probs=38.3

Q ss_pred             CCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         124 KDGKRREI-KGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       124 ~~G~~~~v-~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      -+|+.+++ .+.++++|++.++++ |+. ....|+ .|.||.|-|.|.
T Consensus         5 ~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~-~G~CGaCtv~~~   51 (467)
T TIGR02963         5 LNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCA-EGDCGACTVVVG   51 (467)
T ss_pred             ECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccC-CCCCCceEEEEE
Confidence            57988888 699999999999974 764 789998 699999999995

Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.84  E-value=0.074  Score=31.12  Aligned_cols=30  Identities=20%  Similarity=0.144  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437           7 VINAAQMAVKFDEENQDEIAAYYYQAAARF   36 (232)
Q Consensus         7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   36 (232)
                      |..+..+|..+...|+|++|+.+|++|+++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            345678999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit

Probab=94.58  E-value=0.053  Score=55.95  Aligned_cols=44  Identities=14%  Similarity=0.151  Sum_probs=37.2

Q ss_pred             CCCCEEEEEecCCchHHHHHHHCCCC-ccC-CCCCCcccccCEEEEe
Q psy1437         124 KDGKRREIKGKVGDNVLYLAHRYEIP-MEG-ACEASLACTTCHVYVK  168 (232)
Q Consensus       124 ~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~-~CgG~G~CgtC~v~v~  168 (232)
                      .+|+.+++++.++++||+.+++.|+. +.. .|+ .|.||.|-|.|.
T Consensus         3 ~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~-~g~CGaCtv~~d   48 (951)
T TIGR03313         3 LNGAPQTLECKLGENVQTLLFNMGMHSVRNSDDG-FGFAGSDAILFN   48 (951)
T ss_pred             ECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCC-cccCCCCEEEEC
Confidence            36888889999999999999998764 555 576 899999999984

Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.

>KOG2282|consensus

Probab=93.87  E-value=0.099  Score=50.05  Aligned_cols=55  Identities=20%  Similarity=0.366  Sum_probs=42.6

Q ss_pred             CCCCCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----CcccccCEEEEec
Q psy1437         109 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA-----SLACTTCHVYVKH  169 (232)
Q Consensus       109 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG-----~G~CgtC~v~v~~  169 (232)
                      .|.+ ++.+.|.+   +|..  |.+.+|.|+|+++...|++||-.|--     .|.|..|.|.|..
T Consensus        26 ~~a~-~~~ievfv---d~~~--v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek   85 (708)
T KOG2282|consen   26 TPAS-PNKIEVFV---DDQS--VMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK   85 (708)
T ss_pred             ccCC-ccceEEEE---CCee--EeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence            4444 34466653   5755  89999999999999999999999931     2789999998864

>PLN00192 aldehyde oxidase

Probab=93.38  E-value=0.13  Score=55.01  Aligned_cols=48  Identities=19%  Similarity=0.389  Sum_probs=40.0

Q ss_pred             EEEEeCCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         119 ITFIDKDGKRREI-KGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       119 Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      |+|. .+|+.+++ .+.++.|||+.++++ |+. ....|+ .|.||.|-|.|.
T Consensus         6 i~~~-vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~-~G~CGaCtV~v~   56 (1344)
T PLN00192          6 LVFA-VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCG-EGGCGACVVLLS   56 (1344)
T ss_pred             EEEE-ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCC-CCcCCCcEEEEe
Confidence            5553 57988888 689999999999975 764 778998 799999999995

>TIGR02969 mam_aldehyde_ox aldehyde oxidase

Probab=93.32  E-value=0.11  Score=55.49  Aligned_cols=48  Identities=17%  Similarity=0.362  Sum_probs=38.9

Q ss_pred             EEEEeCCCCEE-EEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         119 ITFIDKDGKRR-EIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       119 Vt~~~~~G~~~-~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      |+|. .+|+.+ ...+.+++|||+.+++. |+. ....|+ .|.||.|-|.|.
T Consensus         3 ~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~-~G~CGaCtV~~~   53 (1330)
T TIGR02969         3 LLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCG-GGGCGACTVMIS   53 (1330)
T ss_pred             EEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcC-CCCCCCcEEEEC
Confidence            4553 578875 45789999999999974 764 778998 699999999996

Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.

>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1

Probab=93.20  E-value=0.12  Score=52.86  Aligned_cols=42  Identities=21%  Similarity=0.465  Sum_probs=35.3

Q ss_pred             CCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEe
Q psy1437         124 KDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK  168 (232)
Q Consensus       124 ~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~  168 (232)
                      .+|.  .+++.++++||+.+++. |+ .....|+ .|.||.|-|.|.
T Consensus         5 ~ng~--~~~~~~~~~l~~~lr~~~~~~~~k~gc~-~g~cgactv~~d   48 (848)
T TIGR03311         5 VNGR--EVDVNEEKKLLEFLREDLRLTGVKNGCG-EGACGACTVIVN   48 (848)
T ss_pred             ECCE--EeeCCCCCcHHHHHHHhcCCCcCCCCCC-CCCCCCcEEEEC
Confidence            4575  48889999999999974 76 4789998 799999999993

Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.07  E-value=0.2  Score=30.10  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             HHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437          10 AAQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus        10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      +...|.-+...|+|++|+.+|++|+.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45677888899999999999999873

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=92.79  E-value=0.37  Score=50.01  Aligned_cols=71  Identities=17%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             EEEEeCCCCEEEEEecCCchHHHHHHHCCCCcc-----------CCCCCCcccccCEEEEecCCccCCCCCChhHHhhcC
Q psy1437         119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME-----------GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLD  187 (232)
Q Consensus       119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~-----------~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~  187 (232)
                      |+|. -+|+.  +++.+|+||..|++.+|+.+-           ..|. .|.|..|.|.|..|..               
T Consensus        13 ~~~~-~dg~~--~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~---------------   73 (985)
T TIGR01372        13 LRFT-FDGKS--YSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQ---------------   73 (985)
T ss_pred             EEEE-ECCEE--eecCCCCHHHHHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcC---------------
Confidence            4443 47866  999999999999999997642           3686 4789999999954410               


Q ss_pred             CcCCCCCCcEEeeeeEEecCCCceEEEec
Q psy1437         188 LAPFLKDNSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       188 ~~~~~~~g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                           ....+.||++.+..   ||+|+-.
T Consensus        74 -----~~~~~~ac~~~~~~---gm~~~~~   94 (985)
T TIGR01372        74 -----REPNTRATTQELYD---GLVATSQ   94 (985)
T ss_pred             -----CCCCccceeEEccc---CCEEecc
Confidence                 01113488888776   4877654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2709|consensus

Probab=92.46  E-value=0.43  Score=44.76  Aligned_cols=71  Identities=20%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh--cc--CChHHHHH------HHHH----HHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA--NS--SSDENVAA------WRQK----AQQYLNRAEVLKDK   69 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~--~e--~~~~~~~~------~~~k----~~eY~~RaE~lk~~   69 (232)
                      +..|..++.+++-.|..+..++|+.+|.+||.++..-+  -+  +++.+-..      +.+|    .++-..|.+-|++.
T Consensus        19 yk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~Rl~vL~kq   98 (560)
T KOG2709|consen   19 YKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHRLNVLKKQ   98 (560)
T ss_pred             HHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45788899999999999999999999999999999844  12  22222222      3344    44556688888877


Q ss_pred             HHHHH
Q psy1437          70 IQVMF   74 (232)
Q Consensus        70 ~~~~~   74 (232)
                      ++...
T Consensus        99 kqsid  103 (560)
T KOG2709|consen   99 KQSID  103 (560)
T ss_pred             hcccc
Confidence            65443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.01  E-value=0.63  Score=26.87  Aligned_cols=28  Identities=14%  Similarity=0.215  Sum_probs=23.8

Q ss_pred             HHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437           9 NAAQMAVKFDEENQDEIAAYYYQAAARF   36 (232)
Q Consensus         9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   36 (232)
                      .+...|.-+...|++++|+.+|++|+++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3556788889999999999999999874

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=90.69  E-value=0.36  Score=32.52  Aligned_cols=32  Identities=16%  Similarity=0.176  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437           5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARF   36 (232)
Q Consensus         5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   36 (232)
                      ++|..+..+|..+=..|+|++|+.+|.+|+++
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~   32 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL   32 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            35778889999999999999999999999974

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.80  E-value=0.94  Score=25.92  Aligned_cols=28  Identities=14%  Similarity=0.129  Sum_probs=21.9

Q ss_pred             HHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437           9 NAAQMAVKFDEENQDEIAAYYYQAAARF   36 (232)
Q Consensus         9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   36 (232)
                      -+-..|.-+=..|+|++|+.+|++|+++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3456677788899999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised

Probab=89.66  E-value=0.91  Score=39.54  Aligned_cols=51  Identities=24%  Similarity=0.292  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhc-------cCC---------hH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437          23 DEIAAYYYQAAARFLLETAN-------SSS---------DE---NVAAWRQKAQQYLNRAEVLKDKIQVM   73 (232)
Q Consensus        23 ~~~A~~~Y~~ai~~l~~~~~-------e~~---------~~---~~~~~~~k~~eY~~RaE~lk~~~~~~   73 (232)
                      ..||+.+|.+|+.+|..++.       .+.         ..   ..+-+|+++++.++|||.|+..+...
T Consensus        69 ~~E~LVLYvKaL~lLa~am~~a~~~w~~~~~~~~~~~~S~~vn~vVqwlr~rfneclekae~lr~~l~~~  138 (238)
T PF12063_consen   69 SAEALVLYVKALSLLAKAMDIASAWWYSKNRGSGSLNPSSRVNQVVQWLRERFNECLEKAEFLRLRLQEA  138 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999988762       110         11   13358999999999999999999433

This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity

>KOG2880|consensus

Probab=89.65  E-value=1.9  Score=39.70  Aligned_cols=67  Identities=22%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c--cC---ChHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N--SS---SDENVAAWRQKA-QQYLNRAEVLKDKI   70 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~--e~---~~~~~~~~~~k~-~eY~~RaE~lk~~~   70 (232)
                      ++..|.++.++|--+-.+||++.|+.+|..=+.+|+.-+ +  .+   -+.++ -|+.|+ .+-+.|+++|+..+
T Consensus        31 yfRsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~s~k~ek~-d~~~klk~~~~p~~deL~~~l  104 (424)
T KOG2880|consen   31 YFRSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYRSVKPEKE-DIRKKLKEEAFPRIDELKAKL  104 (424)
T ss_pred             hhhhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhcccCcchhhhchhHH-HHHHHHHHHhhhhHHHHHHHH
Confidence            578899999999999999999999999999999999866 2  11   12222 344443 34566777776554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=88.90  E-value=4  Score=27.99  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437           7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA   41 (232)
Q Consensus         7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~   41 (232)
                      |.-+-..|.-+=..|+|++|+.+|++|+++ ....
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~   38 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQL   38 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHH
Confidence            445566777778899999999999999998 5443

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=86.00  E-value=1.6  Score=30.02  Aligned_cols=31  Identities=19%  Similarity=0.165  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437           7 VINAAQMAVKFDEENQDEIAAYYYQAAARFL   37 (232)
Q Consensus         7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l   37 (232)
                      |..+...|.-+...|+|++|+.+|++|++++
T Consensus        46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   46 ANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4445555666666677777777777776654

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.85  E-value=2.2  Score=25.31  Aligned_cols=35  Identities=11%  Similarity=0.022  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437           7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA   41 (232)
Q Consensus         7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~   41 (232)
                      |..+-..|.-+=..|+|++|+.+|.++++....++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   36 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLL   36 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence            34556778888889999999999999998766554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=83.66  E-value=7.4  Score=34.16  Aligned_cols=67  Identities=22%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           6 EVINAAQMAVKFDEE-NQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL   75 (232)
Q Consensus         6 ~A~~~~~~Av~~D~~-g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~   75 (232)
                      .|.-+.+-|.-+.+. |++++|+.+|++|++++..   +..+........++....-+..+..+.+..-.+
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~---e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ---EGSPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            344555666667777 8999999999999998875   223344445566666666666655555544433

>smart00028 TPR Tetratricopeptide repeats

Probab=82.64  E-value=2.1  Score=22.52  Aligned_cols=26  Identities=15%  Similarity=0.169  Sum_probs=21.7

Q ss_pred             HHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437          10 AAQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus        10 ~~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      +...|.-+-..|++++|+.+|++++.
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            45677788888999999999998875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised

Probab=80.59  E-value=13  Score=32.45  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=32.5

Q ss_pred             chHHHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHHHh
Q psy1437           3 LPEEVINAAQMAVKFDEEN-QDEIAAYYYQAAARFLLETA   41 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g-~~~~A~~~Y~~ai~~l~~~~   41 (232)
                      +++.|+++.+.|.-.+=-| +.+.+...|..|+- |+.++
T Consensus       161 iYdrALemsr~AA~~El~g~~~~~ce~~Y~tA~~-lLe~L  199 (238)
T PF12063_consen  161 IYDRALEMSRTAAVDELFGENLEGCEQRYETAIW-LLEAL  199 (238)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHHH-HHHHH
Confidence            4688999999999999889 99999999999994 44444

This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
2y5c_A	109	Structure Of Human Ferredoxin 2 (Fdx2)in Complex Wi		2e-39
2wlb_A	103	Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of Schi		5e-23
1l6v_A	128	Structure Of Reduced Bovine Adrenodoxin Length = 12		1e-19
1cje_A	127	Adrenodoxin From Bovine Length = 127		1e-19
1l6u_A	128	Nmr Structure Of Oxidized Adrenodoxin Length = 128		1e-19
1e6e_B	128	Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHO		1e-19
3p1m_A	132	Crystal Structure Of Human Ferredoxin-1 (Fdx1) In C		4e-19
3n9z_C	123	Crystal Structure Of Human Cyp11a1 In Complex With		7e-19
3n9y_C	114	Crystal Structure Of Human Cyp11a1 In Complex With		8e-19
2bt6_A	108	Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin Length =		2e-18
1ayf_A	105	Bovine Adrenodoxin (oxidized) Length = 105		2e-18
2jqr_B	105	Solution Model Of Crosslinked Complex Of Cytochrome		1e-17
1oqq_A	106	Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOX		8e-15
1gpx_A	106	C85s Gapdx, Nmr, 20 Structures Length = 106		1e-14
1oqr_A	106	Crystal Structure Of C73s Mutant Of Putidaredoxin,		2e-14
3hui_A	126	Crystal Structure Of The Mutant A105r Of [2fe-2s] F		2e-14
1r7s_A	106	Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant Lengt		2e-14
1pdx_A	106	Putidaredoxin Length = 106		2e-14
1put_A	106	An Nmr-Derived Model For The Solution Structure Of		4e-14
1e9m_A	106	Ferredoxin Vi From Rhodobacter Capsulatus Length =		2e-12
1i7h_A	111	Crystal Sturcuture Of Fdx Length = 111		6e-12
3lxf_A	104	Crystal Structure Of [2fe-2s] Ferredoxin Arx From N		2e-09
3na0_C	68	Crystal Structure Of Human Cyp11a1 In Complex With		2e-09
3ah7_A	113	Crystal Structure Of The Isc-Like [2fe-2s] Ferredox		3e-09
1b9r_A	105	Terpredoxin From Pseudomonas Sp Length = 105		1e-05

>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With 2fe2s Cluster Length = 109

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 68/106 (64%), Positives = 89/106 (83%)
Query: 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 174
           ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ + +EGACEASLAC+TCHVYV  ++LD 
Sbjct: 4   DVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDL 63
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
           LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TR
Sbjct: 64  LPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR 109

>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of Schizosaccharomyces Pombe Mitochondria Length = 103

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 176
           + + F+  +G+   I+G  GD++L LAH   I +EGACE S+AC+TCHV V  E+ + L 
Sbjct: 4   IKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLD 63
Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           P EE E+D+LDLA  L++ SRLGCQ++L K+L+GI V +P
Sbjct: 64  PPEEDEEDMLDLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103

>pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin Length = 128

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 110 PKSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYV 167
             SED+I  + FI++DG+    KGK+GD++L   + +  +I   GACE +LAC+TCH+  
Sbjct: 1   SSSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIF 59
Query: 168 KHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
           +    + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P A  +
Sbjct: 60  EQHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113

>pdb|1CJE|A Chain A, Adrenodoxin From Bovine Length = 127

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
            SED+I  + FI++DG+    KGK+GD++L   + +  +I   GACE +LAC+TCH+  +
Sbjct: 1   SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 59
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
               + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P A  +
Sbjct: 60  QHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 112

>pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin Length = 128

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
            SED+I  + FI++DG+    KGK+GD++L   + +  +I   GACE +LAC+TCH+  +
Sbjct: 2   SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 60
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
               + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P A  +
Sbjct: 61  QHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113

>pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL P450 Systems Length = 128

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
            SED+I  + FI++DG+    KGK+GD++L   + +  +I   GACE +LAC+TCH+  +
Sbjct: 2   SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 60
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
               + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P A  +
Sbjct: 61  QHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPDAVSD 113

>pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex With Iron- Sulfur Cluster Length = 132

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 110 PKSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYV 167
             SED+I  + FI++DG+    KGKVGD++L   + +  +I   GACE +LAC+TCH+  
Sbjct: 2   SSSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIF 60
Query: 168 KHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKA 218
           +    + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P+ 
Sbjct: 61  EDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 111

>pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22- Hydroxycholesterol Length = 123

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
            SED+I  + FI++DG+    KGKVGD++L   + +  +I   GACE +LAC+TCH+  +
Sbjct: 1   SSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 59
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKA 218
               + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P+ 
Sbjct: 60  DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 109

>pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With Cholesterol Length = 114

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 111 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 168
            SED+I  + FI++DG+    KGKVGD++L   + +  +I   GACE +LAC+TCH+  +
Sbjct: 1   SSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 59
Query: 169 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKA 218
               + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P+ 
Sbjct: 60  DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPET 109

>pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin Length = 108

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 112 SEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKH 169
           S  + + + FI++DG+    KGK+GD++L   + +  +I   GACE +LAC+TCH+  + 
Sbjct: 2   SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQ 61
Query: 170 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
              + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P
Sbjct: 62  HIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 108

>pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized) Length = 105

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Query: 117 VNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 174
           + + FI++DG+    KGK+GD++L   + +  +I   GACE +LAC+TCH+  +    + 
Sbjct: 4   ITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEK 63
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P
Sbjct: 64  LEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 105

>pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C And Adrenodoxin Length = 105

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 117 VNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 174
           + + FI++DG+    KGK+GD++L   + +  +I   GACE +LAC+TCH+  +    + 
Sbjct: 4   ITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEK 63
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           L    ++E+D+LD A  L D SRLGCQI LTK ++ + V +P
Sbjct: 64  LEAITDEENDMLDCAYGLTDRSRLGCQISLTKAMDNMTVRVP 105

>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A [2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a Resolution Length = 106

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
           + ++  DG RRE+    G +++  A    I  + G C  S +C TCHVYV   + D +P 
Sbjct: 3   VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A E+E  +L+ +   LK NSRL CQII+T EL+GI V +P
Sbjct: 63  ANEREIGMLESVTAELKPNSRLSCQIIMTPELDGIVVDVP 102

>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures Length = 106

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
           + ++  DG RRE+    G +++  A    I  + G C  S +C TCHVYV   + D +P 
Sbjct: 3   VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A E+E  +L+ +   LK NSRL CQII+T EL+GI V +P
Sbjct: 63  ANEREIGMLECVTAELKPNSRLSCQIIMTPELDGIVVDVP 102

>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe- 2s] Ferredoxin From Pseudomonas Putida, At 1.65a Resolution Length = 106

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
           + ++  DG RRE+    G +++  A    I  + G C  S +C TCHVYV   + D +P 
Sbjct: 3   VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A E+E  +L+ +   LK NSRL CQII+T EL+GI V +P
Sbjct: 63  ANEREIGMLESVTAELKPNSRLCCQIIMTPELDGIVVDVP 102

>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s] Ferredoxin In The Class I Cyp199a2 System From Rhodopseudomonas Palustris Length = 126

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDA 174
           +  I F+D  G+ R ++ + G  V+  A R  IP +E  C  + AC TCHVYV   + + 
Sbjct: 21  MAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREK 80
Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
           +      E+D+LD    ++ NSRL CQI ++ EL+G+ VT P+  R
Sbjct: 81  VGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126

>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant Length = 106

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
           + ++  DG RRE+    G +++  A    I  + G C  S +C TCHVYV   + D +P 
Sbjct: 3   VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A E+E  +L+ +   LK NSRL CQII+T EL+GI V +P
Sbjct: 63  ANEREIGMLEGVTAELKPNSRLCCQIIMTPELDGIVVDVP 102

>pdb|1PDX|A Chain A, Putidaredoxin Length = 106

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
           + ++  DG RRE+    G +++  A    I  + G C  S +C TCHVYV   + D +P 
Sbjct: 3   VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A E+E  +L+ +   LK NSRL CQII+T EL+GI V +P
Sbjct: 63  ANEREIGMLECVTAELKPNSRLCCQIIMTPELDGIVVDVP 102

>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From Pseudomonas Length = 106

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 177
           + ++  DG RR++    G +++  A    I  + G C  S +C TCHVYV   + D +P 
Sbjct: 3   VVYVSHDGTRRQLDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A E+E  +L+ +   LK NSRL CQII+T EL+GI V +P
Sbjct: 63  ANEREIGMLECVTAELKPNSRLCCQIIMTPELDGIVVDVP 102

>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus Length = 106

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           I FI+ +G R E++ K G  V+  A    +P ++  C  + AC+TCH YV   ++D LP 
Sbjct: 3   IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPK 62
Query: 178 AEEKEDDLLDLA--PFLKDNSRLGCQIILTKELEGIEVTLPK 217
           A   E D++D A  P     SRL CQI +T  L+G+ V LP+
Sbjct: 63  ALPTETDMIDFAYEPN-PATSRLTCQIKVTSLLDGLVVHLPE 103

>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx Length = 111

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 131 IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190
           ++   G+ +L  A R  I +E ACE S ACTTCH  V+ E  D+LP + E+EDD+LD A 
Sbjct: 19  LEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVR-EGFDSLPESSEQEDDMLDKAW 77
Query: 191 FLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
            L+  SRL CQ  +T   E + V +P+ T N
Sbjct: 78  GLEPESRLSCQARVTD--EDLVVEIPRYTIN 106

>pdb|3LXF|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin Arx From Novosphingobium Aromaticivorans Length = 104

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           I    +DG R EI+ + G +++       I  +   C    +C TCHV V   + D LP 
Sbjct: 3   ILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPA 62
Query: 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
               E+DLLD +     +SRL CQI +  +LEG+EV
Sbjct: 63  LSGDENDLLDSSDHRTPHSRLSCQITINDKLEGLEV 98

>pdb|3NA0|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20,22- Dihydroxycholesterol Length = 68

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 152 GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI 202
           GACE +LAC+TCH+  +    + L    ++E+D+LDLA  L D SRLGCQI
Sbjct: 17  GACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQI 67

>pdb|3AH7|A Chain A, Crystal Structure Of The Isc-Like [2fe-2s] Ferredoxin (Fdxb) From Pseudomonas Putida Jcm 20004 Length = 113

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 131 IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 190
           ++ K G N+L LAH + I ME AC    ACTTCH  V+  + D+L  A+E E+D+LD A 
Sbjct: 19  VEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGF-DSLEEADELEEDMLDKAW 77
Query: 191 FLKDNSRLGCQIILTKELEGIEVTLPKATRN 221
            L+  SRLGCQ+ +  E   IE+  PK + N
Sbjct: 78  GLEAQSRLGCQVFVADEDLTIEI--PKYSLN 106

>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           + FID+      +  + G +++ +A +  +P +   C  S  C TC + ++  +++ +  
Sbjct: 3   VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62
Query: 178 AEEKEDDLL-DLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A   E+DLL      +   +RL CQ+ +   ++G+ V +P
Sbjct: 63  ANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVP 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	3e-57
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	8e-57
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	2e-55
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	2e-53
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	5e-53
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	1e-51
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	1e-49
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	2e-49
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	4e-49
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	2e-48
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	6e-48
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	2e-35
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	3e-08
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	1e-07
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	2e-07
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	2e-07
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	6e-07

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris} Length = 126

 Score =  176 bits (449), Expect = 3e-57
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 100 TRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASL 158
             H       P+       I F+D  G+ R ++ + G  V+  A R  IP +E  C  + 
Sbjct: 6   HHHHHSSGLVPRGSHMA-KINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGAC 64

Query: 159 ACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKA 218
           AC TCHVYV   + + +      E+D+LD    ++ NSRL CQI ++ EL+G+ VT P+ 
Sbjct: 65  ACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSNELDGLIVTTPER 124

Query: 219 TR 220
            R
Sbjct: 125 QR 126

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens} Length = 109

 Score =  175 bits (445), Expect = 8e-57
 Identities = 68/108 (62%), Positives = 89/108 (82%)

Query: 113 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYL 172
             ++VN+ F+D+ G+R  + G+VGDNVL+LA R+ + +EGACEASLAC+TCHVYV  ++L
Sbjct: 2   ASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHL 61

Query: 173 DALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATR 220
           D LPP EE+EDD+LD+AP L++NSRLGCQI+LT ELEG E TLPK TR
Sbjct: 62  DLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR 109

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A Length = 123

 Score =  172 bits (437), Expect = 2e-55
 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 2/121 (1%)

Query: 112 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKH 169
           S ++ + + FI++DG+    KGKVGD++L +     + ++G  ACE +LAC+TCH+  + 
Sbjct: 1   SSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFED 60

Query: 170 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTP 229
              + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P+   +        
Sbjct: 61  HIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVG 120

Query: 230 K 230
           K
Sbjct: 121 K 121

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe} Length = 103

 Score =  166 bits (423), Expect = 2e-53
 Identities = 49/102 (48%), Positives = 71/102 (69%)

Query: 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 174
             + + F+  +G+   I+G  GD++L LAH   I +EGACE S+AC+TCHV V  E+ + 
Sbjct: 2   TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYEL 61

Query: 175 LPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           L P EE E+D+LDLA  L++ SRLGCQ++L K+L+GI V +P
Sbjct: 62  LDPPEEDEEDMLDLAFGLEETSRLGCQVLLRKDLDGIRVRIP 103

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C* Length = 108

 Score =  165 bits (420), Expect = 5e-53
 Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 112 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKH 169
           S  + + + FI++DG+    KGK+GD++L +  +  + ++G  ACE +LAC+TCH+  + 
Sbjct: 2   SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQ 61

Query: 170 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
              + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P
Sbjct: 62  HIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 108

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida} Length = 113

 Score =  162 bits (411), Expect = 1e-51
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 10/117 (8%)

Query: 119 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 175
           +TF+  +    +   ++ K G N+L LAH + I ME AC    ACTTCH  V  +  D+L
Sbjct: 4   VTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIV-RKGFDSL 62

Query: 176 PPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 232
             A+E E+D+LD A  L+  SRLGCQ+ +    E + + +PK + N   +     PH
Sbjct: 63  EEADELEEDMLDKAWGLEAQSRLGCQVFVAD--EDLTIEIPKYSLNHAAEA----PH 113

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} Length = 104

 Score =  156 bits (398), Expect = 1e-49
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           I    +DG R EI+ + G +++       I  +   C    +C TCHV V   + D LP 
Sbjct: 3   ILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPA 62

Query: 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
               E+DLLD +     +SRL CQI +  +LEG+EV + 
Sbjct: 63  LSGDENDLLDSSDHRTPHSRLSCQITINDKLEGLEVEIA 101

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1 Length = 105

 Score =  156 bits (397), Expect = 2e-49
 Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           + FID+      +  + G +++ +A +  +P +   C  S  C TC + ++  +++ +  
Sbjct: 3   VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62

Query: 178 AEEKEDDLLDLAPF-LKDNSRLGCQIILTKELEGIEVTLP 216
           A   E+DLL      +   +RL CQ+ +   ++G+ V +P
Sbjct: 63  ANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVP 102

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A Length = 106

 Score =  155 bits (395), Expect = 4e-49
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)

Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           + ++  DG RRE+    G +++  A    I  + G C  S +C TCHVYV   + D +P 
Sbjct: 3   VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62

Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A E+E  +L+ +   LK NSRL CQII+T EL+GI V +P
Sbjct: 63  ANEREIGMLESVTAELKPNSRLCCQIIMTPELDGIVVDVP 102

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A Length = 106

 Score =  153 bits (390), Expect = 2e-48
 Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM-EGACEASLACTTCHVYVKHEYLDALPP 177
           I FI+ +G R E++ K G  V+  A    +P  +  C  + AC+TCH YV   ++D LP 
Sbjct: 3   IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPK 62

Query: 178 AEEKEDDLLDLAPFLKD-NSRLGCQIILTKELEGIEVTLPK 217
           A   E D++D A       SRL CQI +T  L+G+ V LP+
Sbjct: 63  ALPTETDMIDFAYEPNPATSRLTCQIKVTSLLDGLVVHLPE 103

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1 Length = 111

 Score =  152 bits (387), Expect = 6e-48
 Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 119 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 175
           I  +           ++   G+ +L  A R  I +E ACE S ACTTCH  V  E  D+L
Sbjct: 4   IVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIV-REGFDSL 62

Query: 176 PPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
           P + E+EDD+LD A  L+  SRL CQ  +T   E + V +P+ T N 
Sbjct: 63  PESSEQEDDMLDKAWGLEPESRLSCQARVTD--EDLVVEIPRYTINH 107

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1 Length = 93

 Score =  120 bits (303), Expect = 2e-35
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALP 176
            IT + K G ++++K +    +  +     +   +  C+ + AC  C           + 
Sbjct: 2   TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHV---SGKVA 57

Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTL 215
            AE+ E + L+       N+RL C I L+ E +G    L
Sbjct: 58  AAEDDEKEFLE---DQPANARLACAITLSGENDGAVFEL 93

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B* Length = 83

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 3  LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA-AWRQKAQQYLN 61
          L +     A +AVK D+E + E A  YY+ A   L +      +     A+ Q   +Y  
Sbjct: 7  LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKK 66

Query: 62 RAEVLKDKIQ 71
          R   L+  + 
Sbjct: 67 RISYLEKVLP 76

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} Length = 85

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 8  INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENV-AAWRQKAQQYLNRAEVL 66
          I   Q A+  D   Q E A   Y     +L+       +       R K  +YLNRAE L
Sbjct: 14 IELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQL 73

Query: 67 KDKIQ 71
          K  ++
Sbjct: 74 KKHLE 78

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 Length = 93

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 8  INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENV-AAWRQKAQQYLNRAEVL 66
          +   + AV+ D E++ + A   YQ     LL+    + + +     R K   Y++RAE +
Sbjct: 16 VAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI 75

Query: 67 KDKIQ 71
          K  + 
Sbjct: 76 KKYLD 80

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1 Length = 117

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 8  INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA--AWRQKAQQYLNRAEV 65
          I+ A  A + D+    E A   YQ A ++ L      +  + A  + R K  +YL+RAE 
Sbjct: 19 IDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK 78

Query: 66 LKDKIQ 71
          LK+ ++
Sbjct: 79 LKEYLK 84

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} Length = 83

 Score = 45.0 bits (106), Expect = 6e-07
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 3  LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA-AWRQKAQQYLN 61
          L E     A  AVK D+E   E A   Y+ A   L +  +   D + A  + Q   +Y  
Sbjct: 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKR 74

Query: 62 RAEVLKDKI 70
          R EVLK+ I
Sbjct: 75 RIEVLKELI 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	99.97
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	99.96
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	99.96
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	99.96
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	99.96
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	99.95
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	99.95
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	99.94
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	99.94
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	99.94
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	99.9
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	99.9
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	99.87
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	99.84
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	99.83
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	99.83
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	99.82
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	99.82
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	99.82
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	99.82
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	99.82
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	99.81
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	99.81
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	99.81
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	99.81
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	99.77
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.74
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	99.73
2ymb_A	257	MITD1, MIT domain-containing protein 1; protein tr	99.73
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	99.71
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.56
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.45
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	98.53
1t3q_A	168	Quinoline 2-oxidoreductase small subunit; QOR, mol	98.34
3c8y_A	574	Iron hydrogenase 1; dithiomethylether, H-cluster,	98.24
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	98.23
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	97.93
3hrd_D	160	Nicotinate dehydrogenase small FES subunit; seleni	97.87
1rm6_C	161	4-hydroxybenzoyl-COA reductase gamma subunit; xant	97.82
1n62_A	166	Carbon monoxide dehydrogenase small chain; CODH, m	97.81
1ffv_A	163	CUTS, iron-sulfur protein of carbon monoxide dehyd	97.8
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	97.74
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	97.62
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	97.58
3eab_A	89	Spastin; spastin, MIT, ESCRT, alternative splicing	97.15
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	96.86
1vlb_A	907	Aldehyde oxidoreductase; iron-sulphur cluster; HET	96.72
3nvw_A	164	Xanthine dehydrogenase/oxidase; hydroxylase, homod	96.65
2w3s_A	462	Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2	96.6
1dgj_A	907	Aldehyde oxidoreductase; beta half-barrel, four-he	96.5
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	96.41
2xze_A	146	STAM-binding protein; hydrolase-protein transport	96.09
2a9u_A	144	Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL	96.07
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	95.59
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	94.37
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	92.65
3unc_A	1332	Xanthine dehydrogenase/oxidase; oxidoreductase; HE	92.43
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	91.3
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	90.09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	89.95
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	89.86
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	88.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	87.49
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	87.33
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	86.82
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	86.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	86.46
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	86.25
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	85.16
3zyv_A	1335	AOH1; oxidoreductase, molybdenum cofactor; HET: MT	85.03
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	84.14
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	83.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	83.67
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	83.27
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	83.1
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	82.31
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	81.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	81.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	81.11
3u7z_A	101	Putative metal binding protein rumgna_00854; the b	80.34
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	80.16

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=99.97  E-value=4.3e-31  Score=206.95  Aligned_cols=110  Identities=35%  Similarity=0.661  Sum_probs=102.5

Q ss_pred             CCCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCc
Q psy1437         111 KSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA  189 (232)
Q Consensus       111 ~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~  189 (232)
                      +.+++|++|||++++|.+++|.+.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|.++|+.+
T Consensus        16 ~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~   95 (126)
T 3hui_A           16 PRGSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFG   95 (126)
T ss_dssp             CTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTS
T ss_pred             CCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCch
Confidence            446889999999899988889999999999999999999 9999999999999999999998888899999999999855


Q ss_pred             CCCCCCcEEeeeeEEecCCCceEEEecCccc
Q psy1437         190 PFLKDNSRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       190 ~~~~~g~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      .++.+|||||||+++.+||||++|++|+.+|
T Consensus        96 ~e~~~g~RLaCQ~~~~~dldgl~V~lp~~~r  126 (126)
T 3hui_A           96 YDVRPNSRLSCQIKVSNELDGLIVTTPERQR  126 (126)
T ss_dssp             SSCCTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred             hhccCCeEEeeeCEECcCCCcEEEEecCcCC
Confidence            7899999999999999999999999998765

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.7e-30  Score=198.41  Aligned_cols=107  Identities=64%  Similarity=1.120  Sum_probs=99.6

Q ss_pred             CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437         114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK  193 (232)
Q Consensus       114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~  193 (232)
                      ++|++|+|++++|..++|.+.+|+|||++|+++||++++.|+|.|.||||+|+|.+|+++.++++++.|..+|+...++.
T Consensus         3 ~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~   82 (109)
T 2y5c_A            3 SDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ   82 (109)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCC
Confidence            57999999889999889999999999999999999999999989999999999999988888999999999997546899


Q ss_pred             CCcEEeeeeEEecCCCceEEEecCccc
Q psy1437         194 DNSRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       194 ~g~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      +|||||||+++++|++|++|++|+.+|
T Consensus        83 ~g~rLaCq~~~~~d~~~~~v~ip~~~~  109 (109)
T 2y5c_A           83 ENSRLGCQIVLTPELEGAEFTLPKITR  109 (109)
T ss_dssp             TTEEEGGGCBCCGGGTTCEEECCSCCC
T ss_pred             CCcEeeEEeEEecCCCeEEEEecCCCC
Confidence            999999999999999999999998764

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=99.96  E-value=2.6e-30  Score=196.94  Aligned_cols=105  Identities=40%  Similarity=0.789  Sum_probs=96.5

Q ss_pred             CCCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCcc--CCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCc
Q psy1437         112 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME--GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA  189 (232)
Q Consensus       112 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~--~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~  189 (232)
                      +..+|++|+|++++|..++|++.+|+|||++|+++||+++  +.|+|.|+||||||+|.+|+++.++++++.|.++|+..
T Consensus         2 ~~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~   81 (108)
T 2bt6_A            2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLA   81 (108)
T ss_dssp             ---CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTC
T ss_pred             CCCceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCc
Confidence            3467999999889999888999999999999999999999  99999999999999999998888999999999999855


Q ss_pred             CCCCCCcEEeeeeEEecCCCceEEEec
Q psy1437         190 PFLKDNSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       190 ~~~~~g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                      .++.+|||||||+++.+|+||++|++|
T Consensus        82 ~~~~~g~rLaCq~~~~~d~d~~~V~~p  108 (108)
T 2bt6_A           82 YGLTDRSRLGCQICLTKAMDNMTVRVP  108 (108)
T ss_dssp             TTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred             ccCCCCcEeeEEEEecCCCCCEEEEcC
Confidence            789999999999999999999999987

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A

Probab=99.96  E-value=9.4e-32  Score=209.91  Aligned_cols=111  Identities=38%  Similarity=0.735  Sum_probs=26.0

Q ss_pred             CCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCcc--CCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437         113 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME--GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP  190 (232)
Q Consensus       113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~--~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~  190 (232)
                      +++|++|||++++|..++|++.+|+|||++|+++||+++  +.|+|.|.||||||+|.+|+++.++++++.|.++|+.+.
T Consensus         2 ~~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~   81 (123)
T 3n9z_C            2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAY   81 (123)
T ss_dssp             -----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC--
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccc
Confidence            478999999999998889999999999999999999999  999999999999999998878889999999999998667


Q ss_pred             CCCCCcEEeeeeEEecCCCceEEEecCcccccc
Q psy1437         191 FLKDNSRLGCQIILTKELEGIEVTLPKATRNFY  223 (232)
Q Consensus       191 ~~~~g~RLaCQ~~~~~dl~g~~V~lp~~~~~~~  223 (232)
                      ++.+|||||||++++++|||++|+||+.+++..
T Consensus        82 ~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~~~~~  114 (123)
T 3n9z_C           82 GLTDRSRLGCQICLTKSMDNMTVRVPETVADAR  114 (123)
T ss_dssp             ------CBCC-----------------------
T ss_pred             cccCCeEEeeEeEEccCCCCEEEEECccccccc
Confidence            899999999999999999999999999887753

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0

Probab=99.96  E-value=6.6e-30  Score=193.82  Aligned_cols=102  Identities=33%  Similarity=0.587  Sum_probs=96.0

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      ++|||++++|..++|.+.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|..+|+.+.++.+|
T Consensus         1 ~~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g   80 (104)
T 3lxf_A            1 TAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPH   80 (104)
T ss_dssp             CEEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTT
T ss_pred             CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCC
Confidence            369999999999999999999999999999999 9999999999999999999999888999999999999754789999


Q ss_pred             cEEeeeeEEecCCCceEEEecCc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      ||||||+++.+||+|++|++|+.
T Consensus        81 ~rLaCq~~~~~dl~gl~v~ip~~  103 (104)
T 3lxf_A           81 SRLSCQITINDKLEGLEVEIAPE  103 (104)
T ss_dssp             EEEGGGCBCCGGGTTCEEEECCC
T ss_pred             cEEEeeCEEccCCCCEEEEecCC
Confidence            99999999999999999999975

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A

Probab=99.95  E-value=1.7e-27  Score=180.69  Aligned_cols=102  Identities=39%  Similarity=0.690  Sum_probs=93.5

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC-CCC
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL-KDN  195 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~-~~g  195 (232)
                      +|+|+.++|..++|.+.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|.++|+...++ .+|
T Consensus         2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (106)
T 1xlq_A            2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence            68887789977789999999999999999999 9999998999999999999998888999999999999854447 999


Q ss_pred             cEEeeeeEEecCCCceEEEecCcc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKAT  219 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~  219 (232)
                      +||+||+++.+||+|++|++|+..
T Consensus        82 ~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1xlq_A           82 SRLCCQIIMTPELDGIVVDVPDRQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEeeeeeEeecCCCCEEEEecCcc
Confidence            999999999999999999999753

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A

Probab=99.95  E-value=8.8e-28  Score=182.20  Aligned_cols=103  Identities=38%  Similarity=0.692  Sum_probs=94.1

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC-C
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK-D  194 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~-~  194 (232)
                      ++|+|+.++|..++|.+.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|.++|+...++. +
T Consensus         1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~   80 (106)
T 1uwm_A            1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA   80 (106)
T ss_dssp             CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTT
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCC
Confidence            468887799977789999999999999999999 99999989999999999999988889999999999998544788 9


Q ss_pred             CcEEeeeeEEecCCCceEEEecCcc
Q psy1437         195 NSRLGCQIILTKELEGIEVTLPKAT  219 (232)
Q Consensus       195 g~RLaCQ~~~~~dl~g~~V~lp~~~  219 (232)
                      |+||+||+++.+||+|++|++|+..
T Consensus        81 g~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1uwm_A           81 TSRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             TEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             CcEecccCEEccCCCCEEEEecCCC
Confidence            9999999999999999999998653

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=99.94  E-value=2.7e-27  Score=178.61  Aligned_cols=102  Identities=48%  Similarity=0.863  Sum_probs=94.1

Q ss_pred             ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437         115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD  194 (232)
Q Consensus       115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~  194 (232)
                      ++++|+|.+++|..++|.+.+|+|||++|+++||++++.|+|.|.||+|+|+|.+|+++.++++++.|.++|+...++.+
T Consensus         2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~   81 (103)
T 2wlb_A            2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEE   81 (103)
T ss_dssp             CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCT
T ss_pred             CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCC
Confidence            35789998789987889999999999999999999999999899999999999999888788899999999985467899


Q ss_pred             CcEEeeeeEEecCCCceEEEec
Q psy1437         195 NSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       195 g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                      |+||+||+++.+||+|++|++|
T Consensus        82 g~rLaCq~~~~~d~~~l~v~lp  103 (103)
T 2wlb_A           82 TSRLGCQVLLRKDLDGIRVRIP  103 (103)
T ss_dssp             TEEEGGGCBCCGGGTTEEEECC
T ss_pred             CcEeeEeeEeCCCCCcEEEEcC
Confidence            9999999999999999999987

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1

Probab=99.94  E-value=6.6e-28  Score=182.61  Aligned_cols=102  Identities=23%  Similarity=0.561  Sum_probs=92.8

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcC-CcCCCCC
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLD-LAPFLKD  194 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~-~~~~~~~  194 (232)
                      ++|+|+.++|..++|++.+|+|||++|+++||+ +++.|+|.|.||||+|+|.+|+++.++++++.|.++|+ ...++.+
T Consensus         1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~   80 (105)
T 1b9r_A            1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA   80 (105)
T ss_dssp             CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred             CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence            468887789977789999999999999999999 99999999999999999999988888889999999997 3467899


Q ss_pred             CcEEeeeeEEecCCCceEEEecCc
Q psy1437         195 NSRLGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       195 g~RLaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      |+|||||+++.+|+++++|++|+.
T Consensus        81 g~rLaCq~~~~~~~~~l~v~~p~~  104 (105)
T 1b9r_A           81 GTRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             TBSCGGGCCCCTTSTTEEEECCSC
T ss_pred             CcEeeeeCEecCCCCcEEEEecCC
Confidence            999999999999999999999863

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}

Probab=99.94  E-value=1.3e-26  Score=177.78  Aligned_cols=108  Identities=37%  Similarity=0.632  Sum_probs=94.5

Q ss_pred             eeEEEEEeCCC---CEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437         116 IVNITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL  192 (232)
Q Consensus       116 mv~Vt~~~~~G---~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~  192 (232)
                      |++|||++++|   ..++|.+.+|+|||++|+++||++++.|+|.|.||+|+|+|.+|+ ..++++++.|..+|+...++
T Consensus         1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~-~~~~~~~~~e~~~L~~~~~~   79 (113)
T 3ah7_A            1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGF-DSLEEADELEEDMLDKAWGL   79 (113)
T ss_dssp             CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESG-GGSCCCCHHHHHHHTTSTTC
T ss_pred             CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCc-ccCCCCCHHHHHhhhccccc
Confidence            78899987766   446799999999999999999999999998999999999999996 66888899999999754478


Q ss_pred             CCCcEEeeeeEEe-cCCCceEEEecCcccccccCCC
Q psy1437         193 KDNSRLGCQIILT-KELEGIEVTLPKATRNFYVDGH  227 (232)
Q Consensus       193 ~~g~RLaCQ~~~~-~dl~g~~V~lp~~~~~~~~~~~  227 (232)
                      .+|+|||||+++. +|   ++|++|..+.|...+|+
T Consensus        80 ~~g~rLaCq~~~~~~d---l~v~~~~~~~~~~~~~~  112 (113)
T 3ah7_A           80 EAQSRLGCQVFVADED---LTIEIPKYSLNHAAEAP  112 (113)
T ss_dssp             CTTEEEGGGCBCCSSC---EEEECCSCCCCCCC---
T ss_pred             CCCcEEeeeCEEeCCC---EEEEECchhhhhhhccC
Confidence            9999999999998 55   99999999999999884

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1

Probab=99.90  E-value=5.2e-24  Score=162.79  Aligned_cols=105  Identities=37%  Similarity=0.599  Sum_probs=90.0

Q ss_pred             eeEEEEEeCCC---CEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437         116 IVNITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL  192 (232)
Q Consensus       116 mv~Vt~~~~~G---~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~  192 (232)
                      |++|+|+.++|   ..++|.+.+|+|||++|+++|+++++.|+|.|.||+|+|+|.+|+ ..++++++.|..+|+...++
T Consensus         1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~-~~~~~~~~~e~~~L~~~~~~   79 (111)
T 1i7h_A            1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF-DSLPESSEQEDDMLDKAWGL   79 (111)
T ss_dssp             -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECG-GGSCCCCHHHHHHHTTCTTC
T ss_pred             CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCc-ccCCCCCHHHHHHhhhcccc
Confidence            67899986554   345799999999999999999999999988899999999999996 45777888898899754478


Q ss_pred             CCCcEEeeeeEEe-cCCCceEEEecCccccccc
Q psy1437         193 KDNSRLGCQIILT-KELEGIEVTLPKATRNFYV  224 (232)
Q Consensus       193 ~~g~RLaCQ~~~~-~dl~g~~V~lp~~~~~~~~  224 (232)
                      .+|+||+||+++. +|   ++|++|+.++|+..
T Consensus        80 ~~g~rLaCq~~~~~~d---l~v~~~~~~~~~~~  109 (111)
T 1i7h_A           80 EPESRLSCQARVTDED---LVVEIPRYTINHAR  109 (111)
T ss_dssp             CTTEEETTTCBCCSSC---EEEECCSCCCCTTC
T ss_pred             CCCcEEEEEEEEeCCC---EEEEEChHHhhhhc
Confidence            8999999999996 65   99999998888754

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1

Probab=99.90  E-value=7.4e-24  Score=157.14  Aligned_cols=91  Identities=24%  Similarity=0.407  Sum_probs=82.4

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      +|+| .++|..++|++.+|+|||++|+++|++ +++.|+|.|.||+|+|+|.+|.   ++++++.|..+|+   ++.+|+
T Consensus         2 ~v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~---~~~~~~~e~~~L~---~~~~g~   74 (93)
T 1l5p_A            2 TITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGK---VAAAEDDEKEFLE---DQPANA   74 (93)
T ss_dssp             EEEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESC---CCCCCHHHHHHHT---TSCTTE
T ss_pred             eEEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCc---CCCCCHHHHHHhc---CCCCCc
Confidence            4664 478987889999999999999999999 9999999999999999999875   5677888988996   789999


Q ss_pred             EEeeeeEEecCCCceEEEe
Q psy1437         197 RLGCQIILTKELEGIEVTL  215 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~l  215 (232)
                      |||||+++.+|++|++|+|
T Consensus        75 rLaCq~~~~~d~~g~~v~~   93 (93)
T 1l5p_A           75 RLACAITLSGENDGAVFEL   93 (93)
T ss_dssp             EEGGGCEECGGGTTCEEEC
T ss_pred             EEeeECEECCCCCceEEEC
Confidence            9999999999999999985

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=99.87  E-value=1.2e-21  Score=145.54  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=77.3

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLC   80 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~~~~s   80 (232)
                      +|+++|++++++||++|++|+|++|+.+|++||++|+.++ +++++..++.|++|+.+|++|||+||.+++..++.|++|
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~~~g~~~   89 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKEDGKSG   89 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence            5789999999999999999999999999999999999999 689999999999999999999999999999999999998


Q ss_pred             CC
Q psy1437          81 KL   82 (232)
Q Consensus        81 ~~   82 (232)
                      .+
T Consensus        90 ~~   91 (93)
T 1wfd_A           90 PS   91 (93)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=99.84  E-value=1.7e-21  Score=141.70  Aligned_cols=69  Identities=32%  Similarity=0.295  Sum_probs=65.5

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKI   70 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~   70 (232)
                      +++++|++++++||++|++|+|++|+.+|++||++|+.++ +++|+..++.||+|+.||++|||+||++|
T Consensus        14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~~l   83 (83)
T 2w2u_A           14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI   83 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4789999999999999999999999999999999999999 68999999999999999999999999853

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=99.83  E-value=3.5e-21  Score=140.14  Aligned_cols=68  Identities=26%  Similarity=0.287  Sum_probs=66.0

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKI   70 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~   70 (232)
                      ++++|++++++||++|++|+|++|+.+|++||++|++++ +++|+..++.||+|+.+|++|||+||+++
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l   75 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL   75 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            789999999999999999999999999999999999999 68999999999999999999999999987

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A

Probab=99.83  E-value=4.7e-21  Score=142.96  Aligned_cols=94  Identities=17%  Similarity=0.298  Sum_probs=78.2

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|+|..++| .++|.+.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|.+.      ..|...|+ ..++.+|+
T Consensus         3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g~   73 (97)
T 1a70_A            3 YKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCR-AGSCSSCAGKLKTGSLN------QDDQSFLD-DDQIDEGW   73 (97)
T ss_dssp             EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSS-SSCSSTTEEEEEESCEE------CTTCCSSC-HHHHHHTE
T ss_pred             EEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCeEEEccCCcC------ccccccCC-HHHhhCCe
Confidence            5788865666 4679999999999999999999999998 89999999999999643      23445665 34567899


Q ss_pred             EEeeeeEEecCCCceEEEecCccccc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKATRNF  222 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~~~~  222 (232)
                      ||+||+++.+|   ++|++|+.++.+
T Consensus        74 ~LaCq~~~~~d---~~v~~~~~~~~~   96 (97)
T 1a70_A           74 VLTCAAYPVSD---VTIETHKKEELT   96 (97)
T ss_dssp             EEGGGCEESSC---EEEECCCGGGCC
T ss_pred             EEEeECEECCC---EEEEeCchhhcc
Confidence            99999999998   999999876643

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.82  E-value=5.9e-21  Score=141.46  Aligned_cols=93  Identities=19%  Similarity=0.285  Sum_probs=77.0

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      +.+|+|..++| .++|++.+|+|||++|+++||++++.|+ .|.||+|+|+|.+|.+.      ..|...|+ ..++.+|
T Consensus         1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~~~~~L~-~~~~~~g   71 (95)
T 1frr_A            1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCR-AGACSSCLGKVVSGSVD------ESEGSFLD-DGQMEEG   71 (95)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCC-HHHHHTT
T ss_pred             CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCC-CcCCCCCEEEEEeCCcc------ccccccCC-HHHHhCC
Confidence            36788866888 5679999999999999999999999998 79999999999999643      22345665 3456789


Q ss_pred             cEEeeeeEEecCCCceEEEecCccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      +||+||+++.+|   ++|++|+..+
T Consensus        72 ~~LaC~~~~~~~---~~v~~~~~~~   93 (95)
T 1frr_A           72 FVLTCIAIPESD---LVIETHKEEE   93 (95)
T ss_dssp             EEETTTCEESSC---EEEECCCTTT
T ss_pred             cEEeeECEECCC---EEEEEcchhh
Confidence            999999999987   9999987543

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=99.82  E-value=1.2e-21  Score=146.29  Aligned_cols=95  Identities=20%  Similarity=0.334  Sum_probs=79.8

Q ss_pred             ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437         115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD  194 (232)
Q Consensus       115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~  194 (232)
                      .|++|+|.+++|..++|.+.+|+|||++|+++|+++++.| |.|.||+|+|+|.+|.+..    .+.|...|+ ..++.+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C-~~G~Cg~C~v~v~~G~~~~----~~~e~~~L~-~~~~~~   76 (98)
T 1jq4_A            3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSC-REGGCATCKALCSEGDYDL----KGCSVQALP-PEEEEE   76 (98)
T ss_dssp             CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSC-CSSCCCCCCBCEEECCCCC----CCSCTTTSC-HHHHHH
T ss_pred             CcEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCC-CCCCCCCCEEEEEcCcccc----CcccccccC-HHHhcC
Confidence            3789999877776678999999999999999999999999 5899999999999996432    233456675 356778


Q ss_pred             CcEEeeeeEEecCCCceEEEecCc
Q psy1437         195 NSRLGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       195 g~RLaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      |+||+||+++.+|   ++|++|+.
T Consensus        77 g~~LaCq~~~~~d---~~v~~~~~   97 (98)
T 1jq4_A           77 GLVLLCRTYPKTD---LEIELPYT   97 (98)
T ss_dssp             HCBCTTTCCSSCC---SEEECSCC
T ss_pred             CcEEEeeCEECCC---EEEEecCC
Confidence            9999999999998   99999864

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...

Probab=99.82  E-value=8.6e-21  Score=141.70  Aligned_cols=93  Identities=19%  Similarity=0.320  Sum_probs=77.4

Q ss_pred             eEEEEEeCCCC-EEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         117 VNITFIDKDGK-RREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       117 v~Vt~~~~~G~-~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      ++|+|+.++|. .++|.+.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|++.      ..|..+|+ ..++.+|
T Consensus         3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g   74 (98)
T 1czp_A            3 FKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCR-AGACSTCAGKLVSGTVD------QSDQSFLD-DDQIEAG   74 (98)
T ss_dssp             EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSSC-HHHHHTT
T ss_pred             eEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCC-CCCCCCCeEEEccCCcC------ccccccCC-HHHhhCC
Confidence            67898766653 4679999999999999999999999998 89999999999999643      22334665 3556789


Q ss_pred             cEEeeeeEEecCCCceEEEecCccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      +||+||+++.+|   ++|++|+.++
T Consensus        75 ~~LaCq~~~~~d---~~v~~~~~~~   96 (98)
T 1czp_A           75 YVLTCVAYPTSD---VVIQTHKEED   96 (98)
T ss_dssp             EEEGGGCEESSC---EEEECCCTTT
T ss_pred             eEEeeeCEECCC---EEEEeccccc
Confidence            999999999998   9999997654

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1

Probab=99.82  E-value=6.4e-21  Score=141.37  Aligned_cols=91  Identities=18%  Similarity=0.317  Sum_probs=76.2

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcE
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR  197 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~R  197 (232)
                      +|+|+.++| .++|.+.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|...      ..|..+|+ ..++.+|+|
T Consensus         2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g~~   72 (94)
T 1awd_A            2 KVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCR-AGACSSCAGKVESGEVD------QSDQSFLD-DAQMGKGFV   72 (94)
T ss_dssp             EEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSSC-HHHHHTTEE
T ss_pred             EEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCC-CCcCCCCEEEEEeCCcC------ccccccCC-HHHHhCCcE
Confidence            577766777 4679999999999999999999999998 89999999999999643      23445665 355778999


Q ss_pred             EeeeeEEecCCCceEEEecCccc
Q psy1437         198 LGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       198 LaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      |+||+++.+|   ++|++|+.++
T Consensus        73 LaCq~~~~~d---~~i~~~~~~~   92 (94)
T 1awd_A           73 LTCVAYPTSD---VTILTHQEAA   92 (94)
T ss_dssp             EGGGCEESSC---EEEECCCGGG
T ss_pred             EeeECEECCC---EEEEecchhc
Confidence            9999999987   9999997654

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=99.82  E-value=4.8e-20  Score=134.91  Aligned_cols=72  Identities=22%  Similarity=0.310  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL   75 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~   75 (232)
                      -.+|++++++||++|++|+|++|+.+|++||++|+.++ +++|+..|+.|++|+.+|++|||+||++|++.++
T Consensus        13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~~k~   85 (86)
T 4a5x_A           13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKE   85 (86)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            35799999999999999999999999999999999999 7899999999999999999999999999976653

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.81  E-value=1.1e-20  Score=139.92  Aligned_cols=91  Identities=19%  Similarity=0.345  Sum_probs=76.2

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      |.+|+|..++| .++|.+.+|+|||++|+++| ++++.|+ .|.||+|+|+|.+|.+.      ..|...|+ ..++.+|
T Consensus         1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~~~~~g   70 (93)
T 1wri_A            1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQ-AGACSTCLGKIVSGTVD------QSEGSFLD-DEQIEQG   70 (93)
T ss_dssp             CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCC-HHHHHTT
T ss_pred             CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCC-CCCCCCCEEEEecCccC------ccccccCC-HHHHhCC
Confidence            46788876766 56799999999999999999 9999998 89999999999999643      23445665 3567789


Q ss_pred             cEEeeeeEEecCCCceEEEecCcc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKAT  219 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~  219 (232)
                      +||+||+++.+|   ++|++|+..
T Consensus        71 ~~LaCq~~~~~d---~~v~~~~~~   91 (93)
T 1wri_A           71 YVLTCIAIPESD---VVIETHKED   91 (93)
T ss_dssp             EEETTTCEESSC---EEEECCCGG
T ss_pred             cEEeeeCEECCC---EEEEecccc
Confidence            999999999998   999999754

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1

Probab=99.81  E-value=1.2e-20  Score=141.05  Aligned_cols=93  Identities=20%  Similarity=0.353  Sum_probs=77.1

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|+|..++| .++|.+++|+|||++|+++|+++++.|+ .|.||+|+|+|.+|.+.      ..|...|+ ..++.+|+
T Consensus         3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g~   73 (98)
T 1iue_A            3 YNITLRTNDG-EKKIECNEDEYILDASERQNVELPYSCR-GGSCSTCAAKLVEGEVD------NDDQSYLD-EEQIKKKY   73 (98)
T ss_dssp             EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSC-SSSSSTTEEEEEESCEE------CTTCCSSC-HHHHHTTE
T ss_pred             EEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCCCCCCCCC-CCcCCCCEEEEeeCCcc------ccccccCC-HHHHhCCe
Confidence            5688875665 5679999999999999999999999998 89999999999999643      23345665 35577899


Q ss_pred             EEeeeeEEecCCCceEEEecCcccc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKATRN  221 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~~~  221 (232)
                      ||+||+++.+|   ++|++|+..+.
T Consensus        74 ~LaCq~~~~~d---~~i~~~~~~~~   95 (98)
T 1iue_A           74 ILLCTCYPKSD---CVIETHKEDEL   95 (98)
T ss_dssp             EEGGGCEESSC---EEEECCCHHHH
T ss_pred             EEEeECEECCC---eEEEeCChHhh
Confidence            99999999998   99999986553

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1

Probab=99.81  E-value=3.1e-20  Score=138.48  Aligned_cols=93  Identities=17%  Similarity=0.221  Sum_probs=76.3

Q ss_pred             eEEEEEeCCC-CEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         117 VNITFIDKDG-KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       117 v~Vt~~~~~G-~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      .+|+|..+++ ..++|.+.+|+|||++|+++||++++.|+ .|.||+|+|+|.+|.+.      ..|..+|+ ..++.+|
T Consensus         3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~-~~e~~~g   74 (98)
T 1frd_A            3 YQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCH-SGSCSSCVGKVVEGEVD------QSDQIFLD-DEQMGKG   74 (98)
T ss_dssp             EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCC-HHHHHTT
T ss_pred             eEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCC-CCCCCCCEEEEEeCCcc------ccccccCC-HHHhhCC
Confidence            6788875554 14579999999999999999999999998 89999999999999643      23345665 3456789


Q ss_pred             cEEeeeeEEecCCCceEEEecCccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      +||+||+++.+|   ++|++|...+
T Consensus        75 ~~LaC~~~~~~d---~~v~~~~~~~   96 (98)
T 1frd_A           75 FALLCVTYPRSN---CTIKTHQEPY   96 (98)
T ss_dssp             EEEGGGCEESSS---EEEECCCGGG
T ss_pred             cEEEeECEECCC---EEEEecchhh
Confidence            999999999998   9999987543

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2e-19  Score=131.31  Aligned_cols=74  Identities=26%  Similarity=0.267  Sum_probs=69.8

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFL   75 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~   75 (232)
                      +++++|+.++++||++|++|+|++|+.+|.+|+++|+.++ +++++..++.|++|+.+|++|||+||.++++.+.
T Consensus         8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~~~~   82 (85)
T 2v6x_A            8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEA   82 (85)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3789999999999999999999999999999999999999 6889999999999999999999999999977654

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=99.77  E-value=1.2e-18  Score=134.30  Aligned_cols=73  Identities=27%  Similarity=0.331  Sum_probs=68.1

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKIQVMF   74 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~   74 (232)
                      +++++|+.++++||++|++|+|++||.+|.+|+++|+.++ ++ .++..++.|++|+.+|++|||+||.+|+...
T Consensus        13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~   87 (117)
T 2cpt_A           13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE   87 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3789999999999999999999999999999999999999 67 6788899999999999999999999997554

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.74  E-value=1.2e-18  Score=155.45  Aligned_cols=96  Identities=21%  Similarity=0.289  Sum_probs=82.0

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      |++|+|..++|..++|++.+|+|||++|+++||++++.|+ .|.||+|+|+|.+|++.. + +.+.|...|+ ..++.+|
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~-~g~Cg~C~v~v~~G~~~~-~-~~~~~~~~l~-~~~~~~g   78 (338)
T 1krh_A            3 NHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCR-EGECGTCRAFCESGNYDM-P-EDNYIEDALT-PEEAQQG   78 (338)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCS-SSSSCTTEEEEEECCEEC-C-GGGSCTTTCC-HHHHHHT
T ss_pred             ceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCEEEEecCcEec-c-cCccccccCC-HHHHhCC
Confidence            6889988777777889999999999999999999999998 899999999999997542 2 1345667776 4578899


Q ss_pred             cEEeeeeEEecCCCceEEEecCc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      +||+||+.+.+|   ++|++|..
T Consensus        79 ~~LaCq~~~~~~---~~v~~~~~   98 (338)
T 1krh_A           79 YVLACQCRPTSD---AVFQIQAS   98 (338)
T ss_dssp             EEETTTCEESSS---EEEEESSC
T ss_pred             eEEEEeCEECCC---eEEEEecc
Confidence            999999999998   99999875

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A

Probab=99.73  E-value=1.4e-19  Score=141.87  Aligned_cols=95  Identities=17%  Similarity=0.254  Sum_probs=75.9

Q ss_pred             CCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437         113 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL  192 (232)
Q Consensus       113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~  192 (232)
                      +.+|.+|+| .++|. ++|.+.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|.++.      .|...|+..+..
T Consensus        24 f~~m~~i~i-~~~g~-~~v~v~~g~tlL~aa~~~Gi~i~~~C~-~G~CgtC~v~v~~G~v~~------~e~~~L~~~e~~   94 (128)
T 1doi_A           24 FGEASDMDL-DDEDY-GSLEVNEGEYILEAAEAQGYDWPFSCR-AGACANCAAIVLEGDIDM------DMQQILSDEEVE   94 (128)
T ss_dssp             HHHHHHSCC-CTTTE-EEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEEE------CCCSSSCHHHHH
T ss_pred             cccccEEEE-EeCCc-EEEEECCCCcHHHHHHHcCCCCccCCC-ccCCCCCEeEEecCCcCc------hhhccCCHhHhc
Confidence            456888887 57885 269999999999999999999999995 799999999999997432      233456522236


Q ss_pred             CCCcEEeeeeEEecCCCceEEEecCc
Q psy1437         193 KDNSRLGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       193 ~~g~RLaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      .+|+||+||+++.+|  .++|++...
T Consensus        95 ~~g~rLaCq~~~~~d--~i~i~~~~~  118 (128)
T 1doi_A           95 DKNVRLTCIGSPDAD--EVKIVYNAK  118 (128)
T ss_dssp             TSCEEEGGGEEECSS--EEEEEECGG
T ss_pred             cCCEEEEEEeEEcCC--eEEEEecCC
Confidence            799999999999987  688876544

>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}

Probab=99.73  E-value=2e-19  Score=155.20  Aligned_cols=83  Identities=20%  Similarity=0.256  Sum_probs=4.8

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNLLCK   81 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~~~~s~   81 (232)
                      ....|++++++||++|++|+|++|+.+|++||++|+.++ +++|+..|+.|++|+++||+|||+||++|+++++++++++
T Consensus        19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~k~~g~~~~   98 (257)
T 2ymb_A           19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKEDGKYHK   98 (257)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCceEE
Confidence            467899999999999999999999999999999999999 6899999999999999999999999999999999999999


Q ss_pred             CCcc
Q psy1437          82 LPPV   85 (232)
Q Consensus        82 ~~~~   85 (232)
                      ++.|
T Consensus        99 ~i~I  102 (257)
T 2ymb_A           99 QIKI  102 (257)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=99.71  E-value=3.3e-18  Score=164.19  Aligned_cols=92  Identities=17%  Similarity=0.248  Sum_probs=79.8

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      |++|+|. ++|++  |++.+|+|||++++++|+++++.|+|.|.||||+|+|.+|+++      ..|...|+ ..++.+|
T Consensus         3 m~~V~~~-~sg~~--v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~------~~e~~~Ls-~~e~~~G   72 (631)
T 3zyy_X            3 EYKVLFK-PDQKE--VAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKR------VESYGKLK-QEEIAQG   72 (631)
T ss_dssp             CEEEEEE-TTTEE--EEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEE------ESCCTTCC-HHHHHTT
T ss_pred             ceEEEEe-cCCeE--EEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCccc------ccccccCC-HHHhcCC
Confidence            7899986 88855  9999999999999999999999999999999999999999753      22335665 3567889


Q ss_pred             cEEeeeeEEecCCCceEEEecCccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      +||+||+++.+|   ++|++|+.++
T Consensus        73 ~rLaCqa~~~sD---l~Ielp~~~~   94 (631)
T 3zyy_X           73 YVLACQTYPESD---LIIEIPFDSR   94 (631)
T ss_dssp             EEETTTEEECSS---EEEECCTTSS
T ss_pred             cEEeeeCEECCC---EEEEecchhh
Confidence            999999999998   9999998765

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.56  E-value=6e-15  Score=130.93  Aligned_cols=87  Identities=13%  Similarity=0.223  Sum_probs=70.6

Q ss_pred             CceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437         114 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK  193 (232)
Q Consensus       114 ~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~  193 (232)
                      +..++|+| .++|.+  |++.+|+|||++++++|++++++|+ .|.||+|+|+|++|.++. .     + ..|+. .+. 
T Consensus       235 ~~~~~v~~-~~~~~~--~~~~~~~~ll~a~~~~g~~~~~~C~-~G~Cg~C~~~v~~G~~~~-~-----~-~~l~~-~e~-  301 (321)
T 2pia_A          235 NTPFTVRL-SRSGTS--FEIPANRSILEVLRDANVRVPSSCE-SGTCGSCKTALCSGEADH-R-----D-MVLRD-DEK-  301 (321)
T ss_dssp             CCCEEEEE-TTTCCE--EEECTTSCHHHHHHHTTCCCCCSCS-SSSSCTTEEEEEESCEEC-C-----C-SSCCT-TTT-
T ss_pred             CccEEEEE-eCCCeE--EEECCCCcHHHHHHHcCCCCCCCCC-CCCCCCCEEEEecCcccc-c-----c-CCCCh-HHH-
Confidence            44588887 477765  8899999999999999999999995 899999999999997541 1     1 46663 456 


Q ss_pred             CCcEEeeeeEEecCCCceEEEe
Q psy1437         194 DNSRLGCQIILTKELEGIEVTL  215 (232)
Q Consensus       194 ~g~RLaCQ~~~~~dl~g~~V~l  215 (232)
                      +|+||+||+++.+|  .++|++
T Consensus       302 ~g~~L~C~~~~~~d--~~~i~l  321 (321)
T 2pia_A          302 GTQIMVCVSRAKSA--ELVLDL  321 (321)
T ss_dssp             TTEEETTTCEESSS--EEEECC
T ss_pred             CCeEEEeEeEECCC--cEEEeC
Confidence            99999999999986  477654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.45  E-value=5.8e-15  Score=136.77  Aligned_cols=73  Identities=27%  Similarity=0.336  Sum_probs=0.0

Q ss_pred             CchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           2 GLPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKIQVMF   74 (232)
Q Consensus         2 ~~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~   74 (232)
                      +++++|++++++||++|++|+|++|+.||++|+++|++++ +| ++++.++.|++|+.+|++|||+||+++++.+
T Consensus         6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~   80 (444)
T 2zan_A            6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKE   80 (444)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4789999999999999999999999999999999999999 67 6777789999999999999999999997654

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*

Probab=98.53  E-value=1.3e-07  Score=93.26  Aligned_cols=87  Identities=14%  Similarity=0.190  Sum_probs=60.4

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCCcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP  190 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C-----gG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~  190 (232)
                      ||+|++   +|+.  +++++|+|||++++++||+||+.|     ++.|.|+.|.|.|..+..+     .+ -..+++...
T Consensus         1 mv~i~i---dg~~--~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~-----~~-g~~~~~~~G   69 (783)
T 3i9v_3            1 MVRVKV---NDRI--VEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKG-----PD-GKPLLNEKG   69 (783)
T ss_dssp             CEEEEC---SSCE--EEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC--------------------
T ss_pred             CeEEEE---CCEE--EEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccc-----cc-ccccccccc
Confidence            566663   6876  889999999999999999999999     5579999999999633110     00 001111100


Q ss_pred             ----CCCCCcEEeeeeEEecCCCceEEEec
Q psy1437         191 ----FLKDNSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       191 ----~~~~g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                          +-..+..+||++.+.++   |+|+..
T Consensus        70 ~~~~~~~~~~~~aC~t~v~~g---m~v~t~   96 (783)
T 3i9v_3           70 EPEIQWQPKLAASCVTAVADG---MVVDTL   96 (783)
T ss_dssp             ---CCBCSSCEETTTCBCCSS---EEEESS
T ss_pred             ccccccCCCcccccCCCCCCC---CEEEEC
Confidence                11357889999999875   999864

>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2

Probab=98.34  E-value=1e-06  Score=71.44  Aligned_cols=69  Identities=16%  Similarity=0.287  Sum_probs=54.1

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      .|+|. .+|+.+++.+.+|+|||++++++ |+. .++.|+ .|.||+|.|.| +|.                        
T Consensus        11 ~i~~~-ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~-~G~CGaC~V~v-dG~------------------------   63 (168)
T 1t3q_A           11 RISAT-INGKPRVFYVEPRMHLADALREVVGLTGTKIGCE-QGVCGSCTILI-DGA------------------------   63 (168)
T ss_dssp             EEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEE-TTE------------------------
T ss_pred             eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCCccccCCC-CCCCCCcEEEE-CCC------------------------
Confidence            45543 57888888899999999999997 997 889997 79999999999 441                        


Q ss_pred             cEEeeeeEEecCCCceEEE
Q psy1437         196 SRLGCQIILTKELEGIEVT  214 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~  214 (232)
                      .++||.+.+.. ++|..|.
T Consensus        64 ~v~sC~~~~~~-~~G~~v~   81 (168)
T 1t3q_A           64 PMRSCLTLAVQ-AEGCSIE   81 (168)
T ss_dssp             EEEGGGSBGGG-GTTCEEE
T ss_pred             EeechhhHHHH-hCCCeEE
Confidence            16788887664 3566554

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*

Probab=98.24  E-value=1.4e-06  Score=83.10  Aligned_cols=68  Identities=18%  Similarity=0.364  Sum_probs=55.1

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----C-CcccccCEEEEecCCccCCCCCChhHHhhcCCc
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----A-SLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA  189 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~Cg-----G-~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~  189 (232)
                      ||+++   .+|+.  +++++|+|||++|+++|+.+|+.|.     + .|.||.|.|.|. |.                  
T Consensus         1 mv~~~---ing~~--v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~-g~------------------   56 (574)
T 3c8y_A            1 MKTII---INGVQ--FNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVE-GT------------------   56 (574)
T ss_dssp             CEEEE---ETTEE--EEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEET-TT------------------
T ss_pred             CeEEE---ECCEE--EEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeC-CC------------------
Confidence            45555   46865  8899999999999999999999997     6 899999999983 21                  


Q ss_pred             CCCCCCcEEeeeeEEecCCCceEEEe
Q psy1437         190 PFLKDNSRLGCQIILTKELEGIEVTL  215 (232)
Q Consensus       190 ~~~~~g~RLaCQ~~~~~dl~g~~V~l  215 (232)
                          . .++||++.+.+   |++|..
T Consensus        57 ----~-~~~aC~t~v~~---gm~V~T   74 (574)
T 3c8y_A           57 ----G-LVTACDTLIED---GMIINT   74 (574)
T ss_dssp             ----E-EEEGGGCBCCT---TCEEES
T ss_pred             ----c-ccccCCCCccc---ceeEEe
Confidence                1 57899998885   588874

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*

Probab=98.23  E-value=1.9e-06  Score=73.30  Aligned_cols=61  Identities=18%  Similarity=0.358  Sum_probs=47.8

Q ss_pred             EEEEecCCchHHHHHHHCCC------CccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         129 REIKGKVGDNVLYLAHRYEI------PMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       129 ~~v~~~~G~tLL~aa~~~gi------~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      ++|++.+|+|||++|+..|+      .....|+ .|.||+|.|.| +|.                        .+|||++
T Consensus        26 ~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~-~G~Cg~C~v~v-~G~------------------------~~~aC~~   79 (243)
T 1kf6_B           26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMV-NNV------------------------PKLACKT   79 (243)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCS-SSSSCCCEEEE-TTE------------------------EEEGGGC
T ss_pred             EEEecCCCChHHHHHHHcCcccCCCcccccCCC-CCcCCCCEeEE-CCE------------------------EEeeeee
Confidence            57889999999999999983      3567895 89999999997 452                        1789998


Q ss_pred             EEecCCCceEEEe
Q psy1437         203 ILTKELEGIEVTL  215 (232)
Q Consensus       203 ~~~~dl~g~~V~l  215 (232)
                      .+....++++|+-
T Consensus        80 ~~~~~~~~~~i~~   92 (243)
T 1kf6_B           80 FLRDYTDGMKVEA   92 (243)
T ss_dssp             BGGGCTTCEEEEC
T ss_pred             EHhhCCCcEEEEe
Confidence            8876545577764

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*

Probab=97.93  E-value=1.4e-05  Score=67.74  Aligned_cols=61  Identities=13%  Similarity=0.328  Sum_probs=45.7

Q ss_pred             EEEEecCCchHHHHHHHCC------CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         129 REIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       129 ~~v~~~~G~tLL~aa~~~g------i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      ++|++.+|+|||++|+..|      +...++|+ .|.||+|.|.| +|..                        +|||++
T Consensus        26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i-~G~~------------------------~~aC~~   79 (241)
T 2bs2_B           26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICGSCGMMI-NGRP------------------------SLACRT   79 (241)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEE-TTEE------------------------EEGGGC
T ss_pred             EEEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCCCCEeEE-CCCe------------------------ecchhC
Confidence            5688889999999999754      34557997 79999999999 6630                        488888


Q ss_pred             EEecCCCc--eEEEec
Q psy1437         203 ILTKELEG--IEVTLP  216 (232)
Q Consensus       203 ~~~~dl~g--~~V~lp  216 (232)
                      .+.. ++|  ++|+..
T Consensus        80 ~~~~-~~g~~~~ie~l   94 (241)
T 2bs2_B           80 LTKD-FEDGVITLLPL   94 (241)
T ss_dssp             BGGG-CTTSEEEEECC
T ss_pred             cHhH-cCCCeEEEecC
Confidence            7765 233  666643

>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}

Probab=97.87  E-value=2.7e-05  Score=62.66  Aligned_cols=49  Identities=20%  Similarity=0.412  Sum_probs=41.7

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEe
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK  168 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~  168 (232)
                      .|+|. .+|+.+++++.+++|||+++++. |+ .....|+ .|.||.|.|.|.
T Consensus         5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~-~G~CGACtV~vd   55 (160)
T 3hrd_D            5 TINLN-LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCS-EGECGACTVIFN   55 (160)
T ss_dssp             EEEEE-ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSS-SSSSCTTEEEET
T ss_pred             eEEEE-ECCEEEEEecCCCCCHHHHHHHhcCCCccccccC-CCCCCCCEEEEC
Confidence            46653 67988889999999999999986 76 4788997 799999999984

>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*

Probab=97.82  E-value=3.6e-05  Score=61.92  Aligned_cols=69  Identities=20%  Similarity=0.369  Sum_probs=52.9

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      .|+|. .+|+.+++.+.+|+|||+++++. |+ .....|+ .|.||.|.|.| +|.                        
T Consensus         4 ~i~~~-vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~-~G~CGaCtV~v-dG~------------------------   56 (161)
T 1rm6_C            4 ILRLT-LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCD-GGECGACTVLV-DDR------------------------   56 (161)
T ss_dssp             EEEEE-ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSS-SSSSCTTEEEE-TTE------------------------
T ss_pred             eEEEE-ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCC-CCCCCCCEEEE-CCc------------------------
Confidence            35553 58998888899999999999987 75 4788998 79999999999 341                        


Q ss_pred             cEEeeeeEEecCCCceEEE
Q psy1437         196 SRLGCQIILTKELEGIEVT  214 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~  214 (232)
                      .++||++.+.. ++|..|.
T Consensus        57 ~v~sC~~~~~~-~~G~~v~   74 (161)
T 1rm6_C           57 PRLACSTLAHQ-VAGKKVE   74 (161)
T ss_dssp             EEEGGGSBGGG-GTTSEEE
T ss_pred             EEechHHHHHH-hCCceEE
Confidence            27788887664 3555443

>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*

Probab=97.81  E-value=4.1e-05  Score=61.92  Aligned_cols=49  Identities=14%  Similarity=0.301  Sum_probs=40.4

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      .|+|. .+|+.+++.+.+++|||+++++. |+. ....|+ .|.||.|.|.|.
T Consensus         5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~-~G~CGaCtV~vd   55 (166)
T 1n62_A            5 HIELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCD-TSHCGACTVDLD   55 (166)
T ss_dssp             EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEET
T ss_pred             eEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCC-CCCCCCCEEEEC
Confidence            35553 57998889999999999999985 653 678997 799999999993

>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*

Probab=97.80  E-value=4.3e-05  Score=61.63  Aligned_cols=49  Identities=20%  Similarity=0.318  Sum_probs=40.2

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      .|+|. .+|+.+++++.+++|||+++++. |+. ....|+ .|.||.|.|.|.
T Consensus         5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~-~G~CGaCtV~vd   55 (163)
T 1ffv_A            5 IITVN-VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCE-TSHCGACTVDID   55 (163)
T ss_dssp             EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEET
T ss_pred             eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCC-CCCCCCCEEEEC
Confidence            35543 57998889999999999999984 653 678998 799999999983

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*

Probab=97.74  E-value=4.9e-05  Score=64.19  Aligned_cols=40  Identities=8%  Similarity=0.169  Sum_probs=33.9

Q ss_pred             EEEEecC--CchHHHHHHHCC-----CCccCCCCCCcccccCEEEEecC
Q psy1437         129 REIKGKV--GDNVLYLAHRYE-----IPMEGACEASLACTTCHVYVKHE  170 (232)
Q Consensus       129 ~~v~~~~--G~tLL~aa~~~g-----i~l~~~CgG~G~CgtC~v~v~~g  170 (232)
                      ++|.+.+  |+|||++|+..+     +....+|+ .|.||+|.|.| +|
T Consensus        23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G   69 (238)
T 2wdq_B           23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCGSDGLNM-NG   69 (238)
T ss_dssp             EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSCTTEEEE-TT
T ss_pred             EEeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCCCCEEEE-CC
Confidence            5688888  999999999987     45567897 79999999998 45

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...

Probab=97.62  E-value=0.0001  Score=63.02  Aligned_cols=75  Identities=16%  Similarity=0.278  Sum_probs=51.7

Q ss_pred             CceeEEEEEeCC----C-----CEEEEEecC-CchHHHHHHHCCC------CccCCCCCCcccccCEEEEecCCccCCCC
Q psy1437         114 DEIVNITFIDKD----G-----KRREIKGKV-GDNVLYLAHRYEI------PMEGACEASLACTTCHVYVKHEYLDALPP  177 (232)
Q Consensus       114 ~~mv~Vt~~~~~----G-----~~~~v~~~~-G~tLL~aa~~~gi------~l~~~CgG~G~CgtC~v~v~~g~~~~l~~  177 (232)
                      ..+++|.+.-.+    +     +.++|.+.+ |.|||++|+..++      .....|+ .|.||+|.|.| +|.      
T Consensus         9 ~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i-~G~------   80 (252)
T 2h88_B            9 SRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCR-EGICGSCAMNI-AGG------   80 (252)
T ss_dssp             CCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEE-TTE------
T ss_pred             CceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCC-CCCCCCCEEEE-CCc------
Confidence            445666665322    2     235677778 9999999999862      2456896 79999999996 441      


Q ss_pred             CChhHHhhcCCcCCCCCCcEEeeeeEEecCCC--ceEEEe
Q psy1437         178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELE--GIEVTL  215 (232)
Q Consensus       178 ~~~~E~~~L~~~~~~~~g~RLaCQ~~~~~dl~--g~~V~l  215 (232)
                                        .+|||++.+..- +  .++|+-
T Consensus        81 ------------------~~~aC~~~~~~~-~g~~~~iep  101 (252)
T 2h88_B           81 ------------------NTLACTKKIDPD-LSKTTKIYP  101 (252)
T ss_dssp             ------------------EEEGGGSBCCCC-TTSCEEEEC
T ss_pred             ------------------EEccccCCHhHc-CCCceEEec
Confidence                              377888877652 3  367773

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.58  E-value=0.00049  Score=52.17  Aligned_cols=67  Identities=22%  Similarity=0.224  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccC------Ch--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSS------SD--ENVAAWRQKAQQYLNRAEVLKDKI   70 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~------~~--~~~~~~~~k~~eY~~RaE~lk~~~   70 (232)
                      ..+|..++.+|++.|..|+-++|+.+|++||+.|...+ -..      ++  .....+++|+.+=+.=|..--..|
T Consensus        19 h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~L   94 (116)
T 2dl1_A           19 YKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEIL   94 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999987 221      11  112247777777555443333333

>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=97.15  E-value=0.002  Score=46.57  Aligned_cols=59  Identities=19%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             chHHHHHHHHHHHHhhhh---cCHHHHHHHHHHHHHHHHHHh-ccCCh-----HHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEE---NQDEIAAYYYQAAARFLLETA-NSSSD-----ENVAAWRQKAQQYLN   61 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~---g~~~~A~~~Y~~ai~~l~~~~-~e~~~-----~~~~~~~~k~~eY~~   61 (232)
                      ..+.|..++.+|...|..   |+-++|+.+|++||+-|...+ -..+.     ..-..+++|+.+=+.
T Consensus        12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~   79 (89)
T 3eab_A           12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLV   79 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHH
Confidence            357899999999999999   999999999999999999987 32221     122246666666444

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=96.86  E-value=0.02  Score=41.58  Aligned_cols=68  Identities=10%  Similarity=0.118  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SSSDENVAAWRQKAQQYLNRAEVLKDKIQ   71 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~~~~~~~~~~~k~~eY~~RaE~lk~~~~   71 (232)
                      ++-|=-.-++|-.+=..|+|++||.|+++|+.||..|++ ..++.....|.-.-.-++.-.+-|++..+
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SLqLQrd~HlKQ~~liq~r~k   80 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQERWK   80 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666778999999999999999999999999999994 34555555555444555555555555443

>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*

Probab=96.72  E-value=0.0023  Score=64.05  Aligned_cols=50  Identities=12%  Similarity=0.274  Sum_probs=42.6

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEE
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYV  167 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v  167 (232)
                      |.+|+|. .+|+.+++.+.++++||+++++. |+ .....|+ .|.||.|-|.|
T Consensus         1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~g~CGaCtv~v   52 (907)
T 1vlb_A            1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCE-QGQCGACSVIL   52 (907)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE
T ss_pred             CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCC-CCCcCccEEEE
Confidence            4467764 78999999999999999999984 65 5788998 69999999998

>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*

Probab=96.65  E-value=0.0018  Score=52.07  Aligned_cols=50  Identities=18%  Similarity=0.305  Sum_probs=39.9

Q ss_pred             eeEEEEEeCCCCEE-EEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEec
Q psy1437         116 IVNITFIDKDGKRR-EIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKH  169 (232)
Q Consensus       116 mv~Vt~~~~~G~~~-~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~~  169 (232)
                      +++++   .+|+.+ .+.+.++.+||+.+++. |+ .....|+ .|.||.|-|.|..
T Consensus         4 ~i~~~---vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~-~G~CGACTVlvd~   56 (164)
T 3nvw_A            4 ELVFF---VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLSK   56 (164)
T ss_dssp             CEEEE---ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred             eEEEE---ECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcC-CCCCCCCEEEEcc
Confidence            34444   468774 56789999999999985 76 4788997 7999999999973

>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*

Probab=96.60  E-value=0.0027  Score=59.03  Aligned_cols=49  Identities=18%  Similarity=0.458  Sum_probs=40.8

Q ss_pred             EEEEeCCCCEEEE-EecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEec
Q psy1437         119 ITFIDKDGKRREI-KGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKH  169 (232)
Q Consensus       119 Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~  169 (232)
                      |+|. .+|+.+++ .+.++++||+.++..|+. ....|+ .|.||.|-|.|..
T Consensus         3 ~~~~-vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~-~G~CGaCtV~v~~   53 (462)
T 2w3s_A            3 IAFL-LNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCN-EGDCGACTVMIRD   53 (462)
T ss_dssp             EEEE-ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred             EEEE-ECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCC-CCCcCCcEEEEEe
Confidence            5553 57998888 789999999999966764 778998 6999999999953

>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1

Probab=96.50  E-value=0.0026  Score=63.73  Aligned_cols=50  Identities=18%  Similarity=0.357  Sum_probs=42.1

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEE
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYV  167 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v  167 (232)
                      |.+|+|. .+|+.+++.+.++++||+++++. |+ .....|+ .|.||.|-|.|
T Consensus         1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~G~CGaCtv~v   52 (907)
T 1dgj_A            1 METKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCG-KGQCGACTVIL   52 (907)
T ss_dssp             CEEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE
T ss_pred             CceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCC-CCCcCceEEEE
Confidence            3456764 68988899999999999999984 65 4678998 69999999999

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*

Probab=96.41  E-value=0.0075  Score=52.53  Aligned_cols=40  Identities=15%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             EEEEEecC-CchHHHHHHHCCCC------ccCCCCCCcccccCEEEEe
Q psy1437         128 RREIKGKV-GDNVLYLAHRYEIP------MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       128 ~~~v~~~~-G~tLL~aa~~~gi~------l~~~CgG~G~CgtC~v~v~  168 (232)
                      .++|.+.+ |.|||++++..+..      ...+|+ .|.||+|.|.|-
T Consensus        56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~-~G~CGsC~V~In  102 (282)
T 3vr8_B           56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCR-EGICGSCAMNIA  102 (282)
T ss_pred             EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCC-CCCCCCCEEEEC
Confidence            46677888 99999999986643      236797 699999999874

>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=96.09  E-value=0.027  Score=44.29  Aligned_cols=71  Identities=21%  Similarity=0.231  Sum_probs=54.7

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c--cC-C---hHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N--SS-S---DENVAAWRQKAQQY-LNRAEVLKDKIQVMF   74 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~--e~-~---~~~~~~~~~k~~eY-~~RaE~lk~~~~~~~   74 (232)
                      ++..|.++.+.|-.+-.+|+++.|+.+|...+.+++..+ .  +. .   +..+ .+..++.+= ++++|.||..|...-
T Consensus        36 ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~-~~l~~l~~~~~~~lE~LK~~L~~rY  114 (146)
T 2xze_A           36 YFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKK-DTVKKLKEIAFPKAEELKAELLKRY  114 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHH-HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHH-HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999998776 3  21 1   3333 344455554 888999998886543

>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1

Probab=96.07  E-value=0.033  Score=43.74  Aligned_cols=73  Identities=11%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc--c--CC-hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN--S--SS-DENVAA-WRQKAQQYLNRAEVLKDKIQVMFL   75 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~--e--~~-~~~~~~-~~~k~~eY~~RaE~lk~~~~~~~~   75 (232)
                      ++..|.++.+.|-.+..+|+.+.|+.+|..-+.++..+-.  +  .. ...+.. ++.++..=++++|.||..|...-.
T Consensus        38 y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE~LK~~L~~rYe  116 (144)
T 2a9u_A           38 YVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYE  116 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4778999999999999999999999999999998853322  1  11 112222 356677889999999999976543

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=95.59  E-value=0.11  Score=36.41  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHH
Q psy1437           7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SSSDENVAAWRQKAQQYLNRAEVLK   67 (232)
Q Consensus         7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~~~~~~~~~~~k~~eY~~RaE~lk   67 (232)
                      =.+.++.|=++=-.|||+.|+.||+.+++.+...+. -.|+..|..+.+-.++-.+=-+.+|
T Consensus        12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk   73 (78)
T 2rpa_A           12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVK   73 (78)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHH
Confidence            456677888888899999999999999999998884 4587777766555444333333333

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.37  E-value=0.035  Score=51.22  Aligned_cols=48  Identities=17%  Similarity=0.155  Sum_probs=33.3

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC---C--CCcccccCEEEEe
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC---E--ASLACTTCHVYVK  168 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C---g--G~G~CgtC~v~v~  168 (232)
                      +++++   .||+.  +++.+|+||+++++++|+++...|   .  |.-.|+.|.|.|.
T Consensus        15 ~v~~~---~dg~~--~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v~   67 (493)
T 1y56_A           15 KVTIY---FEGKE--LEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTVN   67 (493)
T ss_dssp             EEEEE---ETTEE--EEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBSS
T ss_pred             eEEEE---ECCEE--EEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEEC
Confidence            45555   47866  888999999999999999752211   1  1222788988764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=92.65  E-value=0.67  Score=36.65  Aligned_cols=31  Identities=13%  Similarity=0.007  Sum_probs=19.9

Q ss_pred             HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437          11 AQMAVKFDEENQDEIAAYYYQAAARFLLETA   41 (232)
Q Consensus        11 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~   41 (232)
                      ..++.-+-+-|+|++|+.+|..||++|...+
T Consensus        61 ~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           61 AGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            3333334444777788888887777766665

>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*

Probab=92.43  E-value=0.14  Score=53.31  Aligned_cols=48  Identities=19%  Similarity=0.380  Sum_probs=39.1

Q ss_pred             EEEEeCCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         119 ITFIDKDGKRREI-KGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       119 Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      |+|. .+|+.+++ .+.++.+||+.+++. |+. ....|+ .|.||.|-|.|.
T Consensus         6 i~~~-vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~-~g~CGaCtV~~~   56 (1332)
T 3unc_A            6 LVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLS   56 (1332)
T ss_dssp             EEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred             EEEE-ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcC-CCCCCCcEEEEe
Confidence            5543 57988665 689999999999985 764 678997 799999999995

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=91.30  E-value=0.27  Score=49.36  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=38.7

Q ss_pred             ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCC-----------CCCCcccccCEEEEe
Q psy1437         115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGA-----------CEASLACTTCHVYVK  168 (232)
Q Consensus       115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~-----------CgG~G~CgtC~v~v~  168 (232)
                      .+-.|+|. .+|+.  +.+.+|+||..+++.+|+.+...           |+ .|.|..|.|.|.
T Consensus        19 ~~~~~~~~-~dG~~--~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~-~~~c~~~~v~v~   79 (965)
T 2gag_A           19 REEALSLT-VDGAK--LSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAA-GVEEPNALVTVS   79 (965)
T ss_dssp             EEEEEEEE-ETTEE--EEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCS-STTCCSCEEEEC
T ss_pred             CCCeEEEE-ECCEE--EEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccC-CccCCceEEEEc
Confidence            33445553 57866  88899999999999999886543           44 478999999998

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=90.09  E-value=2.2  Score=31.65  Aligned_cols=38  Identities=16%  Similarity=-0.046  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA   41 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~   41 (232)
                      ++.|..+..++..+=+.|+|++|+.+|.+|++++-...
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~   45 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLI   45 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            46678888999999999999999999999999876543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=89.95  E-value=2.5  Score=38.97  Aligned_cols=66  Identities=14%  Similarity=0.024  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----HHHHHHHHHHH
Q psy1437           5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQY-----LNRAEVLKDKI   70 (232)
Q Consensus         5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY-----~~RaE~lk~~~   70 (232)
                      .-|..+.+.|.-+.+.|+|++|..+|++|++.+...+-...|...+.......-|     .+-||.+-...
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577788889999999999999999999999998887434566666443333333     24455554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=89.86  E-value=0.4  Score=37.95  Aligned_cols=35  Identities=14%  Similarity=-0.120  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437           5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLE   39 (232)
Q Consensus         5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   39 (232)
                      ..|-.+..++..+.+.|+|++|+.+|.+||++.-.
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~   43 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT   43 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence            45778889999999999999999999999986543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=88.15  E-value=1.4  Score=33.60  Aligned_cols=17  Identities=29%  Similarity=0.131  Sum_probs=11.8

Q ss_pred             hhcCHHHHHHHHHHHHH
Q psy1437          19 EENQDEIAAYYYQAAAR   35 (232)
Q Consensus        19 ~~g~~~~A~~~Y~~ai~   35 (232)
                      ..|+|++|+.+|.+|++
T Consensus        82 ~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHh
Confidence            45777777777777664

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=87.49  E-value=0.95  Score=31.36  Aligned_cols=29  Identities=7%  Similarity=0.055  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437           7 VINAAQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus         7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      +..+...|..+-..|+|++|+.+|++|++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~   35 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVE   35 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33455666667777777777777777765

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=87.33  E-value=0.39  Score=34.58  Aligned_cols=39  Identities=15%  Similarity=0.325  Sum_probs=27.2

Q ss_pred             CCCCCceeEEEEEeCCCCEEEEEecCCchHHHHH----HHCCCC
Q psy1437         110 PKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLA----HRYEIP  149 (232)
Q Consensus       110 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa----~~~gi~  149 (232)
                      |-.+..| .|+++.++|.+.+|.+.++.+|.+++    ...|++
T Consensus         4 ~~~~~~m-~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~   46 (90)
T 2al3_A            4 PAGGGGS-AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN   46 (90)
T ss_dssp             ------C-CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred             cccCCcc-EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence            3334555 78888899999999999999988764    456775

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=86.82  E-value=2.8  Score=30.51  Aligned_cols=21  Identities=19%  Similarity=-0.089  Sum_probs=14.0

Q ss_pred             HHhhhhcCHHHHHHHHHHHHH
Q psy1437          15 VKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus        15 v~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      .-+-..|+|++|+.+|..|++
T Consensus        60 ~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           60 ACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHh
Confidence            334477777777777777764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=86.72  E-value=4.3  Score=36.82  Aligned_cols=65  Identities=14%  Similarity=-0.043  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH------------HHHHHHHHHHHHHHHH
Q psy1437           6 EVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQ------------KAQQYLNRAEVLKDKI   70 (232)
Q Consensus         6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~------------k~~eY~~RaE~lk~~~   70 (232)
                      -|..+-..|.-+...|+|++|+.+|++|++.....+-+..+..-..+.+            ++..+++||-.|.+..
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            3455566788888999999999999999998888773345555444433            3556666666665543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=86.46  E-value=0.93  Score=32.97  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      .+.|+..-..+..+=+.|+|++|+.+|.+||+
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~   36 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE   36 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555566666777777777777777777775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=86.25  E-value=2.9  Score=37.80  Aligned_cols=48  Identities=8%  Similarity=-0.100  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAA   51 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~   51 (232)
                      ..-|..+.+.|.-+.+.|+|++|+.+|++|++.+...+-...|..++.
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            345778888899999999999999999999999998873345666653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=85.16  E-value=1.3  Score=32.19  Aligned_cols=24  Identities=13%  Similarity=-0.075  Sum_probs=17.2

Q ss_pred             HHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437          12 QMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus        12 ~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      .+|.-+-..|+|++|+.+|.+|++
T Consensus        52 ~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A           52 NRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHhhccHHHHHHHHHHHHH
Confidence            344444466888888888888875

>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}

Probab=85.03  E-value=0.98  Score=47.01  Aligned_cols=49  Identities=18%  Similarity=0.466  Sum_probs=39.0

Q ss_pred             EEEEeCCCCEEEEE-ecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEec
Q psy1437         119 ITFIDKDGKRREIK-GKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVKH  169 (232)
Q Consensus       119 Vt~~~~~G~~~~v~-~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~~  169 (232)
                      |+|. .+|+.+++. +.+..|||+-++.+ ++- -...|+ .|-||.|-|-|..
T Consensus        10 l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~-EG~CGACtV~v~~   61 (1335)
T 3zyv_A           10 LIFF-VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCG-GGDCGACTVMISR   61 (1335)
T ss_dssp             EEEE-ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred             EEEE-ECCEEEEeCCCCcCccHHHHHhccCCCcccccccC-CCCCcceEEEEee
Confidence            6665 688875553 67899999999984 664 567998 7999999999974

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=84.14  E-value=5.4  Score=35.93  Aligned_cols=63  Identities=11%  Similarity=-0.167  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy1437           7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQ------------KAQQYLNRAEVLKDK   69 (232)
Q Consensus         7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~------------k~~eY~~RaE~lk~~   69 (232)
                      |..+-..|..+...|+|++|+.+|+++++.+...+-+..+..-..+.+            .+..|++||-.+.+.
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            445566777788999999999999999998888764445665444433            355555665555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=83.75  E-value=1  Score=35.58  Aligned_cols=68  Identities=16%  Similarity=0.193  Sum_probs=38.6

Q ss_pred             chHHHHHHHHHHHHhhhhcC-----H--------------HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQ-----D--------------EIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQYLNRA   63 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~-----~--------------~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY~~Ra   63 (232)
                      +.++||...++|+++|-..-     .              .+|...|.+|+++|.+++.. +|..  ..-.+..+...+|
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-~P~~--~~y~~al~~~~ka  137 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-QPDN--THYLKSLEMTAKA  137 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-CTTC--HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-CCCC--HHHHHHHHHHHhC
Confidence            35789999999999885432     1              12233567777777777621 2211  1223444556666


Q ss_pred             HHHHHHHHHH
Q psy1437          64 EVLKDKIQVM   73 (232)
Q Consensus        64 E~lk~~~~~~   73 (232)
                      -+|--.+..+
T Consensus       138 ~el~~~~~~~  147 (158)
T 1zu2_A          138 PQLHAEAYKQ  147 (158)
T ss_dssp             HHHHHHHHHS
T ss_pred             HhccCccccc
Confidence            6665555433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=83.67  E-value=1.6  Score=31.61  Aligned_cols=27  Identities=15%  Similarity=0.077  Sum_probs=19.6

Q ss_pred             HHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437          11 AQMAVKFDEENQDEIAAYYYQAAARFL   37 (232)
Q Consensus        11 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l   37 (232)
                      ..+|.-+-..|+|++|+.+|.+|+++-
T Consensus        46 ~nlg~~~~~~~~~~~A~~~~~~al~~~   72 (127)
T 4gcn_A           46 NNKAAVYFEEKKFAECVQFCEKAVEVG   72 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            344444556799999999999988753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=83.27  E-value=1.9  Score=39.81  Aligned_cols=56  Identities=4%  Similarity=-0.184  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVAAWRQKAQQY   59 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~~~~~k~~eY   59 (232)
                      ++.+..++.+|..+-.+|+|++|+.+|+++++....++-...+.....+.+-..-|
T Consensus       306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y  361 (490)
T 3n71_A          306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL  361 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            44566677888889999999999999999998877766445666655555544333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=83.10  E-value=4  Score=30.20  Aligned_cols=25  Identities=12%  Similarity=-0.113  Sum_probs=11.6

Q ss_pred             HHHHHHHhhhhcCHHHHHHHHHHHH
Q psy1437          10 AAQMAVKFDEENQDEIAAYYYQAAA   34 (232)
Q Consensus        10 ~~~~Av~~D~~g~~~~A~~~Y~~ai   34 (232)
                      +..+|.-+-..|+|++|+.+|.+|+
T Consensus        66 ~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           66 YANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3344444444444444444444444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=82.31  E-value=1.9  Score=31.35  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437           5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARF   36 (232)
Q Consensus         5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   36 (232)
                      +.|-.+-.++..+=+.|+|++|+.+|.+|+++
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~   42 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR   42 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45666677888889999999999999999853

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=81.69  E-value=2.1  Score=32.63  Aligned_cols=27  Identities=15%  Similarity=0.174  Sum_probs=15.5

Q ss_pred             HHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437           9 NAAQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus         9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      .+...|..+-+.|+|++|+.+|+++++
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~   64 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCI   64 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555555666666666666665553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=81.63  E-value=3.3  Score=34.15  Aligned_cols=67  Identities=9%  Similarity=0.006  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHH----H-HHH-----HHHH-HHHHHHHHHHHHHHHHHH
Q psy1437           8 INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDEN----V-AAW-----RQKA-QQYLNRAEVLKDKIQVMF   74 (232)
Q Consensus         8 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~----~-~~~-----~~k~-~eY~~RaE~lk~~~~~~~   74 (232)
                      ..+...|.-+-..|+|++|+.+|++|+++....-....-..    . ..+     -+++ .+|+++|-.+-+.+....
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~  274 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA  274 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHh
Confidence            34567788899999999999999999987643100000000    0 001     1234 777888877776664443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=81.11  E-value=2.3  Score=30.00  Aligned_cols=30  Identities=10%  Similarity=0.002  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437           6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus         6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      .|..+..+|..+-..|+|++|+.+|.+|++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~   32 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK   32 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            344555556666666666666666666554

>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}

Probab=80.34  E-value=2.9  Score=30.56  Aligned_cols=34  Identities=12%  Similarity=0.101  Sum_probs=27.9

Q ss_pred             CCceeEEEEEeCCCCE--EEEEecCCchHHHHHHHCC
Q psy1437         113 EDEIVNITFIDKDGKR--REIKGKVGDNVLYLAHRYE  147 (232)
Q Consensus       113 ~~~mv~Vt~~~~~G~~--~~v~~~~G~tLL~aa~~~g  147 (232)
                      ..+.++|+|++.+|..  ..|. ..|++|++++.++.
T Consensus         5 g~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~   40 (101)
T 3u7z_A            5 GEKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN   40 (101)
T ss_dssp             CCEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred             ceeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence            3556999999888865  4566 88999999999988

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=80.16  E-value=2.8  Score=29.46  Aligned_cols=26  Identities=12%  Similarity=-0.155  Sum_probs=18.9

Q ss_pred             HHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437          11 AQMAVKFDEENQDEIAAYYYQAAARF   36 (232)
Q Consensus        11 ~~~Av~~D~~g~~~~A~~~Y~~ai~~   36 (232)
                      ..+|.-+-..|+|++|+.+|.+|+++
T Consensus        42 ~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A           42 SNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34444555888999999888888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d2bt6a1	104	d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [	5e-32
d1b9ra_	105	d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,	2e-29
d1xlqa1	106	d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas	1e-28
d1e9ma_	106	d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsu	6e-27
d1i7ha_	109	d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escheri	6e-24
d1l5pa_	93	d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vagin	3e-22
d1wfda_	93	a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {	2e-10
d1wr0a1	77	a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS	2e-09
d1jq4a_	98	d.15.4.2 (A:) Methane monooxygenase reductase N-te	1e-06
d1krha3	104	d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,	2e-06
d2fug33	95	d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chai	5e-06

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} Length = 104

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  110 bits (277), Expect = 5e-32
 Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 2/104 (1%)

Query: 115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKHEYL 172
           + + + FI++DG+    KGK+GD++L +  +  + ++G  ACE +LAC+TCH+  +    
Sbjct: 1   DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIF 60

Query: 173 DALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           + L    ++E+D+LDLA  L D SRLGCQI LTK ++ + V +P
Sbjct: 61  EKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVP 104

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

 Score =  104 bits (260), Expect = 2e-29
 Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           + FID+      +  + G +++ +A +  +P +   C  S  C TC + ++  +++ +  
Sbjct: 3   VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62

Query: 178 AEEKEDDLLDLAPF-LKDNSRLGCQIILTKELEGIEVTLP 216
           A   E+DLL      +   +RL CQ+ +   ++G+ V +P
Sbjct: 63  ANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVP 102

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

 Score =  102 bits (255), Expect = 1e-28
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)

Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           + ++  DG RRE+    G +++  A    I  + G C  S +C TCHVYV   + D +P 
Sbjct: 3   VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62

Query: 178 AEEKEDDLLD-LAPFLKDNSRLGCQIILTKELEGIEVTLP 216
           A E+E  +L+ +   LK NSRL CQII+T EL+GI V +P
Sbjct: 63  ANEREIGMLESVTAELKPNSRLCCQIIMTPELDGIVVDVP 102

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

 Score = 97.8 bits (243), Expect = 6e-27
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 119 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 177
           I FI+ +G R E++ K G  V+  A    +P ++  C  + AC+TCH YV   ++D LP 
Sbjct: 3   IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPK 62

Query: 178 AEEKEDDLLDLAPFL-KDNSRLGCQIILTKELEGIEVTLPK 217
           A   E D++D A       SRL CQI +T  L+G+ V LP+
Sbjct: 63  ALPTETDMIDFAYEPNPATSRLTCQIKVTSLLDGLVVHLPE 103

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]} Length = 109

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

 Score = 90.1 bits (223), Expect = 6e-24
 Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 119 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 175
           I  +           ++   G+ +L  A R  I +E ACE S ACTTCH  V+  + D+L
Sbjct: 3   IVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF-DSL 61

Query: 176 PPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTLPKATRNF 222
           P + E+EDD+LD A  L+  SRL CQ  +T   E + V +P+ T N 
Sbjct: 62  PESSEQEDDMLDKAWGLEPESRLSCQARVTD--EDLVVEIPRYTINH 106

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

 Score = 85.1 bits (210), Expect = 3e-22
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALP 176
            IT + K G ++++K +    +  +     +   +  C+ + AC  C           + 
Sbjct: 2   TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVS---GKVA 57

Query: 177 PAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEVTL 215
            AE+ E + L        N+RL C I L+ E +G    L
Sbjct: 58  AAEDDEKEFL---EDQPANARLACAITLSGENDGAVFEL 93

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 8  INAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA-AWRQKAQQYLNRAEVL 66
          +   + AV+ D E++ + A   YQ     LL+    + + +     R K   Y++RAE +
Sbjct: 16 VAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI 75

Query: 67 KDKIQ 71
          K  + 
Sbjct: 76 KKYLD 80

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 2e-09
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 5  EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLL--ETANSSSDENVAAWRQKAQQYLNR 62
          ++ I+ A  A + D+    E A   YQ A ++ L      +  D+   + R K  +YL+R
Sbjct: 9  QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68

Query: 63 AEVLKDKIQ 71
          AE LK+ ++
Sbjct: 69 AEKLKEYLK 77

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPP 177
            IT + +DG+    + +  ++V+  A R  I +  +C     C TC         D    
Sbjct: 6   TITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREG-GCATCKALCSEGDYDLKGC 64

Query: 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
           + +            ++   L C+     +LE IE+
Sbjct: 65  SVQALPPEE-----EEEGLVLLCRTYPKTDLE-IEL 94

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} Length = 104

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPP 177
            +    +DG  R I    G+ +   A+R +I +   C     C TC  +        +P 
Sbjct: 4   QVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREG-ECGTCRAF-CESGNYDMPE 61

Query: 178 AEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
               ED L       +    L CQ   T +    ++
Sbjct: 62  DNYIEDALTP--EEAQQGYVLACQCRPTSDAV-FQI 94

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.8 bits (97), Expect = 5e-06
 Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 15/102 (14%)

Query: 117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHEY 171
           V +     + +   ++   G +V+         +   C         AC  C V +    
Sbjct: 2   VRVKV---NDR--IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPK 56

Query: 172 LDALPPAEEKEDDLLDLAPFLKDNSRLGCQIILTKELEGIEV 213
                     E    ++    +      C   +    +G+ V
Sbjct: 57  KGPDGKPLLNEKGEPEIQ--WQPKLAASCVTAVA---DGMVV 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1xlqa1	106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	99.97
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1e9ma_	106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	99.96
d1b9ra_	105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	99.96
d1l5pa_	93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	99.94
d1i7ha_	109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	99.93
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	99.87
d1krha3	104	Benzoate dioxygenase reductase, N-terminal domain	99.87
d1frra_	95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.85
d1a70a_	97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	99.84
d1czpa_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.83
d1frda_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.83
d1awda_	94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	99.82
d1iuea_	98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	99.82
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	99.82
d2fug33	95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	99.79
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	99.76
d2piaa3	98	Phthalate dioxygenase reductase, C-terminal domain	99.76
d1wria_	93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.75
d1doia_	128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	99.66
d3c8ya2	126	Fe-only hydrogenase, N-terminal domain {Clostridiu	98.61
d1t3qa2	81	Quinoline 2-oxidoreductase small subunit QorS, N-d	98.34
d1vlba2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.27
d1dgja2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.04
d1kf6b2	105	Fumarate reductase iron-sulfur protein, N-terminal	98.01
d1ffva2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	97.88
d1rm6c2	81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	97.85
d1n62a2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	97.8
d1jroa2	84	Xanthine dehydrogenase chain A, N-terminal domain	97.67
d2bs2b2	106	Fumarate reductase iron-sulfur protein, N-terminal	97.65
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	97.52
d1v97a2	90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	97.28
d2a9ua1	134	Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Hum	96.22
d1nekb2	106	Succinate dehydogenase iron-sulfur protein, N-term	94.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	93.88
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	92.46
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	90.83
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	90.04
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	89.14
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	88.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	88.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	87.82
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	86.18
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	85.39
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	84.44
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	83.09
d1tkea1	62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	80.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	80.05
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	80.04

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

Probab=99.97  E-value=6.1e-31  Score=198.45  Aligned_cols=101  Identities=41%  Similarity=0.717  Sum_probs=95.1

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCC-cCCCCCC
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDL-APFLKDN  195 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~-~~~~~~g  195 (232)
                      +|||++++|.+++|++.+|+|||++|+++||+ +++.|||.|.||||||+|.+|+.+.++++++.|.++|+. ..++.++
T Consensus         2 KIt~i~~dG~~~~i~~~~G~tLl~aa~~~gi~~i~~~CgG~~~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~   81 (106)
T d1xlqa1           2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHhCcCCchhhhhhccccccceEEecccchhcCCCCCHHHHHHHHhhhccCCCC
Confidence            79999999999999999999999999999995 999999999999999999999989999999999999964 4578899


Q ss_pred             cEEeeeeEEecCCCceEEEecCc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKA  218 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~  218 (232)
                      ||||||+.+++||||++|+||+.
T Consensus        82 sRLaCQ~~v~~~~dgl~V~vPe~  104 (106)
T d1xlqa1          82 SRLCCQIIMTPELDGIVVDVPDR  104 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSC
T ss_pred             cEeeeeeEecccCCCEEEECCCc
Confidence            99999999999999999999975

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=9.3e-31  Score=196.80  Aligned_cols=101  Identities=41%  Similarity=0.803  Sum_probs=95.8

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccC--CCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK  193 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~--~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~  193 (232)
                      +|+|||++++|.+++|++++|+|||++|+++||++++  .|||.|.||||||+|.+|+.+.++++++.|+++|+.+.++.
T Consensus         2 ~i~i~~i~~dG~~~~i~~~~G~tLl~~~~~~gi~i~~~~~CgG~~~C~tC~V~v~~~~~~~l~~~~~~E~~~L~~~~~~~   81 (104)
T d2bt6a1           2 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT   81 (104)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred             eEEEEEECCCCCEEEEEeCCCchHHHHHHHcCCCcccccccCCccccceEEEEecccchhhcCCCCHHHHHHhhccCCCC
Confidence            5899999999999999999999999999999999875  49999999999999999988999999999999998777899


Q ss_pred             CCcEEeeeeEEecCCCceEEEec
Q psy1437         194 DNSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       194 ~g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                      ++||||||+.+++||+|++|+||
T Consensus        82 ~~sRLaCQi~l~~~ldgl~V~vP  104 (104)
T d2bt6a1          82 DRSRLGCQICLTKAMDNMTVRVP  104 (104)
T ss_dssp             TTEEEGGGCBCCGGGTTEEEECC
T ss_pred             cCeEEeeeCEeeccCCCEEEecC
Confidence            99999999999999999999998

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

Probab=99.96  E-value=1.3e-30  Score=196.52  Aligned_cols=102  Identities=38%  Similarity=0.700  Sum_probs=94.4

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCc-CCCCCC
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA-PFLKDN  195 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~-~~~~~g  195 (232)
                      +|||++++|.+++|++++|+|||++|+++||+ +++.|||.|.||||||+|.+|+++.+++++++|.++|+.. ....++
T Consensus         2 KIt~i~~dG~~~~i~~~~G~tLl~a~~~~gi~~i~~~CgG~g~C~tC~V~i~~g~~~~l~~~~~~E~~~L~~~~~~~~~~   81 (106)
T d1e9ma_           2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred             EEEEECCCCCEEEEEECCCChHHHHHHHcCCCCcCcccccCceecceEEEeccCccccCCCCCHHHHHHHhhccccCCCc
Confidence            79999999999999999999999999999996 9999999999999999999998899999999999999644 346689


Q ss_pred             cEEeeeeEEecCCCceEEEecCcc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKAT  219 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~  219 (232)
                      ||||||+.+++|++|++|+||+.+
T Consensus        82 sRLaCQ~~v~~d~~gl~V~iPe~q  105 (106)
T d1e9ma_          82 SRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             eEeeEeCEeccccCCEEEECCccc
Confidence            999999999999999999999754

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

Probab=99.96  E-value=1.1e-30  Score=196.85  Aligned_cols=101  Identities=23%  Similarity=0.563  Sum_probs=93.7

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCC-cCCCCC
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDL-APFLKD  194 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~-~~~~~~  194 (232)
                      ++|||++++|.+++|++.+|+|||++|+++||+ +++.|||+|+||||||+|.+|+++.+++++++|.++|+. ..++.+
T Consensus         1 Pkvt~i~~dG~~~~v~~~~G~tLl~aa~~~gi~~i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~l~~~~~~~~~   80 (105)
T d1b9ra_           1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA   80 (105)
T ss_dssp             CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCcccccCCCccccceEEEecccccccCCCCCHHHHHHHHhccccCCC
Confidence            479999999999999999999999999999997 999999999999999999999988899999999988853 356899


Q ss_pred             CcEEeeeeEEecCCCceEEEecC
Q psy1437         195 NSRLGCQIILTKELEGIEVTLPK  217 (232)
Q Consensus       195 g~RLaCQ~~~~~dl~g~~V~lp~  217 (232)
                      +||||||+++++||||++|+||-
T Consensus        81 ~sRLaCQ~~v~~dldgl~V~vP~  103 (105)
T d1b9ra_          81 GTRLSCQVFIDPSMDGLIVRVPL  103 (105)
T ss_dssp             TBSCGGGCCCCTTSTTEEEECCS
T ss_pred             CcEeEeeeEecccCCCeEEEecC
Confidence            99999999999999999999985

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

Probab=99.94  E-value=3.2e-27  Score=173.91  Aligned_cols=91  Identities=24%  Similarity=0.429  Sum_probs=83.3

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      +|||+ .+|.+++|.+++|+|||++|+++||+ +++.|||.|.||||||+|.+|+   +++++++|.++|+   ++.++|
T Consensus         2 tvtv~-~~G~~~~i~~~~G~tLl~al~~~gi~~i~~~CgG~~~C~tC~v~v~~g~---~~~~~~~E~~~l~---~~~~~~   74 (93)
T d1l5pa_           2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGK---VAAAEDDEKEFLE---DQPANA   74 (93)
T ss_dssp             EEEEE-ETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESC---CCCCCHHHHHHHT---TSCTTE
T ss_pred             eEEEE-ECCeEEEEEeCCCchHHHHHHHhCCCCccccccCCCEeCccEEEEcCCc---cCCCChHHHHHhh---ccCCCc
Confidence            57776 67988999999999999999999995 9999999999999999999986   6788999998885   588999


Q ss_pred             EEeeeeEEecCCCceEEEe
Q psy1437         197 RLGCQIILTKELEGIEVTL  215 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~l  215 (232)
                      |||||++++++|||++|+|
T Consensus        75 RLaCQi~l~~eldg~~v~~   93 (93)
T d1l5pa_          75 RLACAITLSGENDGAVFEL   93 (93)
T ss_dssp             EEGGGCEECGGGTTCEEEC
T ss_pred             EEEEEeEeccccCCeEEEC
Confidence            9999999999999999986

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.1e-27  Score=177.14  Aligned_cols=96  Identities=43%  Similarity=0.655  Sum_probs=87.1

Q ss_pred             eCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         123 DKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       123 ~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      .|+|++  |++.+|+|||++|+++||++++.|||.|+||||+|+|.+|+ +.+++++..|.++|....++.+|||||||+
T Consensus        12 ~p~g~~--v~~~~G~tLl~aa~~~gi~i~~~CgG~g~CgtC~v~v~~G~-~~l~~~~~~E~~~l~~~~~~~~~~RLaCQ~   88 (109)
T d1i7ha_          12 CPDGAV--LEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF-DSLPESSEQEDDMLDKAWGLEPESRLSCQA   88 (109)
T ss_dssp             BTTCEE--EECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECG-GGSCCCCHHHHHHHTTCTTCCTTEEETTTC
T ss_pred             CCCCcE--EEeCCCCcHHHHHHHcCCCCCcCCCCcceeCCeEEEeecCc-cccCCCChHHhhhhhccccCCCCeEEEEee
Confidence            478855  99999999999999999999999999999999999999995 778999999999997667789999999999


Q ss_pred             EEecCCCceEEEecCcccccc
Q psy1437         203 ILTKELEGIEVTLPKATRNFY  223 (232)
Q Consensus       203 ~~~~dl~g~~V~lp~~~~~~~  223 (232)
                      ++.++  |++|+||+.++|..
T Consensus        89 ~v~~~--dl~V~lP~~t~~~~  107 (109)
T d1i7ha_          89 RVTDE--DLVVEIPRYTINHA  107 (109)
T ss_dssp             BCCSS--CEEEECCSCCCCTT
T ss_pred             EECCC--CEEEEeCccchhhc
Confidence            99874  69999999998864

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.87  E-value=9.8e-24  Score=156.38  Aligned_cols=94  Identities=21%  Similarity=0.359  Sum_probs=80.9

Q ss_pred             ceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCC
Q psy1437         115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD  194 (232)
Q Consensus       115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~  194 (232)
                      +|.+|||+.++|+.++|.+++|+|||++|+++||++++.|+| |.||+|+++|++|.+. +.+.   +...|+ ..++.+
T Consensus         3 ~~~tvt~i~~dG~~~~~~~~~g~slLdaa~~~Gi~i~~~C~~-G~Cg~C~~~v~~G~~~-~~~~---~~~~L~-~~e~~~   76 (98)
T d1jq4a_           3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCRE-GGCATCKALCSEGDYD-LKGC---SVQALP-PEEEEE   76 (98)
T ss_dssp             CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCS-SCCCCCCBCEEECCCC-CCCS---CTTTSC-HHHHHH
T ss_pred             ceEEEEEEEcCCCEEEEEeCCCchHHHHHHHcCCCeEEcCCC-ceeCCceEEEEECeEe-cCcc---ccccCC-HhHHhc
Confidence            578999999999988999999999999999999999999985 9999999999999754 3222   224554 356788


Q ss_pred             CcEEeeeeEEecCCCceEEEecC
Q psy1437         195 NSRLGCQIILTKELEGIEVTLPK  217 (232)
Q Consensus       195 g~RLaCQ~~~~~dl~g~~V~lp~  217 (232)
                      |+||+||+++.+|   ++|+||.
T Consensus        77 g~~L~Cq~~~~sD---~~i~lp~   96 (98)
T d1jq4a_          77 GLVLLCRTYPKTD---LEIELPY   96 (98)
T ss_dssp             HCBCTTTCCSSCC---SEEECSC
T ss_pred             CeEEeccCEECCC---EEEEeCC
Confidence            9999999999999   9999985

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

Probab=99.87  E-value=7.2e-23  Score=153.31  Aligned_cols=97  Identities=21%  Similarity=0.302  Sum_probs=80.0

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|||...+|..++|++.+|+|||++++++||+|++.|++ |.||+|+|+|++|.++ +++.... ...|. ..++.+||
T Consensus         3 ~kVt~~f~dg~~~~~~~~~getlL~aa~~~gi~i~~~C~~-G~CgtC~v~v~~G~~~-~~~~~~~-~~~l~-~~e~~~g~   78 (104)
T d1krha3           3 HQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCRE-GECGTCRAFCESGNYD-MPEDNYI-EDALT-PEEAQQGY   78 (104)
T ss_dssp             EEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSS-SSSCTTEEEEEECCEE-CCGGGSC-TTTCC-HHHHHHTE
T ss_pred             eEEEEEeCCCCEEEEEeCCCCcHHHHHHHcCCCCccccCC-cccCCCEEEeeeCccc-ccccccc-cccCC-HHHHhcCc
Confidence            4677766889888999999999999999999999999985 9999999999999753 3322111 23454 45678899


Q ss_pred             EEeeeeEEecCCCceEEEecCccc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      ||+||+++.+|   ++|++|+.+.
T Consensus        79 ~LaCq~~~~~d---~~i~i~~~~e   99 (104)
T d1krha3          79 VLACQCRPTSD---AVFQIQASSE   99 (104)
T ss_dssp             EETTTCEESSS---EEEEESSCTT
T ss_pred             EEeeeCEECCC---EEEEecCcch
Confidence            99999999999   9999998765

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.85  E-value=4.7e-22  Score=146.51  Aligned_cols=92  Identities=20%  Similarity=0.277  Sum_probs=76.4

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|||..++|. ++|.+++|+|||++++++||++|+.|++ |.||+|+++|.+|.+...      +...|+ ..++++|+
T Consensus         2 ~kVt~~~~~~~-~~~~~~~g~slLda~~~~Gi~ip~~C~~-G~CgtC~~~v~~G~v~~~------~~~~l~-~~e~~~g~   72 (95)
T d1frra_           2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRA-GACSSCLGKVVSGSVDES------EGSFLD-DGQMEEGF   72 (95)
T ss_dssp             EEEEEEETTEE-EEEEECTTCCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECT------TCCSCC-HHHHHTTE
T ss_pred             eEEEEECCCCc-EEEEECCCCcHHHHHHHcCCCEEeccCC-cEeCCCEEEEecceEccc------ccccCC-HHHHhcCc
Confidence            57888777774 6799999999999999999999999985 999999999999975421      123454 34567899


Q ss_pred             EEeeeeEEecCCCceEEEecCccc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      ||+||+++.+|   ++|++|.++.
T Consensus        73 ~L~C~~~~~~d---~~ie~~~e~~   93 (95)
T d1frra_          73 VLTCIAIPESD---LVIETHKEEE   93 (95)
T ss_dssp             EETTTCEESSC---EEEECCCTTT
T ss_pred             EEeeeCEECCC---EEEEecCccc
Confidence            99999999998   9999998654

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.84  E-value=5.2e-22  Score=146.76  Aligned_cols=92  Identities=17%  Similarity=0.316  Sum_probs=76.8

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|||+.++| .++|++++|+|||++++++||++++.|+ +|.||+|+++|++|.+..      .+...|+ ..++.+|+
T Consensus         3 fkVtv~~~~g-~~~~~~~~g~tlL~a~~~~Gi~i~~~C~-~G~CgtC~~~v~~G~v~~------~~~~~l~-~~~~~~g~   73 (97)
T d1a70a_           3 YKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCR-AGSCSSCAGKLKTGSLNQ------DDQSFLD-DDQIDEGW   73 (97)
T ss_dssp             EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSS-SSCSSTTEEEEEESCEEC------TTCCSSC-HHHHHHTE
T ss_pred             EEEEEEeCCC-CEEEEeCCCchHHHHHHHcCCCeeeCCC-cEEcCCCEeEeecCcccc------ccccccC-hhHhcCCe
Confidence            6799887887 4679999999999999999999999998 599999999999997532      2233454 34567899


Q ss_pred             EEeeeeEEecCCCceEEEecCccc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      ||+||+++.+|   ++|+++..+.
T Consensus        74 ~L~C~~~~~~D---~~Ie~~~e~e   94 (97)
T d1a70a_          74 VLTCAAYPVSD---VTIETHKKEE   94 (97)
T ss_dssp             EEGGGCEESSC---EEEECCCGGG
T ss_pred             EEeeeCEECCC---EEEEcCChhh
Confidence            99999999999   9999987643

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.83  E-value=1.7e-21  Score=144.19  Aligned_cols=93  Identities=22%  Similarity=0.354  Sum_probs=77.5

Q ss_pred             eEEEEEe-CCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         117 VNITFID-KDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       117 v~Vt~~~-~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      .+|||+. .+|..++|.+++|+|||++|+++||++|++|++ |.||+|+++|.+|.+.. .     +...|+ ..++.+|
T Consensus         3 ~~Vtl~~~~~g~~~~~~v~~~~slL~a~~~~Gi~ip~~C~~-G~CgtC~~~v~~G~v~~-~-----~~~~l~-~~e~~~g   74 (98)
T d1czpa_           3 FKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRA-GACSTCAGKLVSGTVDQ-S-----DQSFLD-DDQIEAG   74 (98)
T ss_dssp             EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEEC-T-----TCCSSC-HHHHHTT
T ss_pred             EEEEEEEcCCCCEEEEEeCcCChHHHHHHHcCCCeEEecCC-cccCCCeeEEecccccc-c-----ccccCC-hhHhcCC
Confidence            5788764 578888999999999999999999999999985 99999999999997532 2     123454 3567789


Q ss_pred             cEEeeeeEEecCCCceEEEecCccc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      +||+||+++.+|   ++|++|.+..
T Consensus        75 ~~L~C~~~~~~d---~~ie~~~e~~   96 (98)
T d1czpa_          75 YVLTCVAYPTSD---VVIQTHKEED   96 (98)
T ss_dssp             EEEGGGCEESSC---EEEECCCTTT
T ss_pred             eEEeccCEECCC---EEEEcCCccc
Confidence            999999999998   9999997654

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.83  E-value=2.2e-21  Score=143.60  Aligned_cols=92  Identities=16%  Similarity=0.224  Sum_probs=75.9

Q ss_pred             eEEEEEeCC-CCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCC
Q psy1437         117 VNITFIDKD-GKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN  195 (232)
Q Consensus       117 v~Vt~~~~~-G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g  195 (232)
                      .+|||+.++ |..++|++++|+|||++|+++||++|+.|+| |.||+|+++|.+|.... .     +...|+ ..++.+|
T Consensus         3 ~~Vt~~~~~~~~~~ti~v~~g~siLdaa~~~Gi~i~~~C~~-G~CgtC~~~v~~G~~~~-~-----~~~~l~-~~~~~~g   74 (98)
T d1frda_           3 YQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHS-GSCSSCVGKVVEGEVDQ-S-----DQIFLD-DEQMGKG   74 (98)
T ss_dssp             EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEEC-T-----TCCSCC-HHHHHTT
T ss_pred             EEEEEEeCCCCceEEEEeCCCChHHHHHHHcCCCEEEecCC-CeeCCCEEEeccCCccc-c-----cccccC-hhhhcCC
Confidence            679988653 5567899999999999999999999999986 89999999999997432 1     123444 3556789


Q ss_pred             cEEeeeeEEecCCCceEEEecCcc
Q psy1437         196 SRLGCQIILTKELEGIEVTLPKAT  219 (232)
Q Consensus       196 ~RLaCQ~~~~~dl~g~~V~lp~~~  219 (232)
                      +||+||+++.+|   ++|++++++
T Consensus        75 ~~L~C~~~~~~D---~~Ie~~~e~   95 (98)
T d1frda_          75 FALLCVTYPRSN---CTIKTHQEP   95 (98)
T ss_dssp             EEEGGGCEESSS---EEEECCCGG
T ss_pred             eEEeeeCEECCC---EEEEeCCcc
Confidence            999999999999   999998765

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

Probab=99.82  E-value=3.9e-21  Score=141.23  Aligned_cols=91  Identities=19%  Similarity=0.297  Sum_probs=74.9

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcE
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR  197 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~R  197 (232)
                      +|||..++|. ++|++++|+|||++|+++||++|++|++ |.||||+++|++|.+....      ...|+ ..++.+|+|
T Consensus         2 kVTl~~~~~~-~~~~~~~~~slL~aa~~~Gi~i~~~C~~-G~CgtC~~~v~~G~v~~~~------~~~l~-~~e~~~g~~   72 (94)
T d1awda_           2 KVTLKTPSGE-ETIECPEDTYILDAAEEAGLDLPYSCRA-GACSSCAGKVESGEVDQSD------QSFLD-DAQMGKGFV   72 (94)
T ss_dssp             EEEEEETTEE-EEEECCTTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTT------CCSSC-HHHHHTTEE
T ss_pred             EEEEEeCCCc-EEEEeCCCCcHHHHHHHcCCcEEEecCC-CccCCceEEEeeceEcccc------cccCC-HHHHhCCcE
Confidence            6888767764 5799999999999999999999999996 9999999999999754321      12343 345678999


Q ss_pred             EeeeeEEecCCCceEEEecCccc
Q psy1437         198 LGCQIILTKELEGIEVTLPKATR  220 (232)
Q Consensus       198 LaCQ~~~~~dl~g~~V~lp~~~~  220 (232)
                      |+||+++.+|   ++|+++..+.
T Consensus        73 L~C~~~~~~D---~~i~~~~~~~   92 (94)
T d1awda_          73 LTCVAYPTSD---VTILTHQEAA   92 (94)
T ss_dssp             EGGGCEESSC---EEEECCCGGG
T ss_pred             EEeeCEECCC---EEEecCChhh
Confidence            9999999999   9999987653

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.82  E-value=3.2e-21  Score=142.75  Aligned_cols=91  Identities=21%  Similarity=0.350  Sum_probs=75.7

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|||..++| .++|.+++|+|||++|+++||++|+.|++ |.||+|+++|.+|.+...      +...|+ ..++.+|+
T Consensus         3 ~~VT~~~~~~-~~~~~~~~getlLda~~~~gi~i~~~C~~-G~CgtC~~~v~~G~v~~~------~~~~l~-~~e~~~g~   73 (98)
T d1iuea_           3 YNITLRTNDG-EKKIECNEDEYILDASERQNVELPYSCRG-GSCSTCAAKLVEGEVDND------DQSYLD-EEQIKKKY   73 (98)
T ss_dssp             EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSCS-SSSSTTEEEEEESCEECT------TCCSSC-HHHHHTTE
T ss_pred             EEEEEEeCCC-eEEEEECCCCcHHHHHHHcCCCeEEcCCc-eEcCCCEEEEecCcCccC------ccccCC-hhHHhcCe
Confidence            6788876665 46899999999999999999999999985 999999999999975421      123454 35567899


Q ss_pred             EEeeeeEEecCCCceEEEecCcc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKAT  219 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~  219 (232)
                      ||+||+++.+|   ++|+++..+
T Consensus        74 ~L~C~~~~~~d---~~ie~~~~~   93 (98)
T d1iuea_          74 ILLCTCYPKSD---CVIETHKED   93 (98)
T ss_dssp             EEGGGCEESSC---EEEECCCHH
T ss_pred             EEecCCEECCC---EEEEcCCcc
Confidence            99999999998   999998654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.1e-20  Score=135.42  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=71.2

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NSSSDENVAAWRQKAQQYLNRAEVLKDKIQVMFLRNL   78 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e~~~~~~~~~~~k~~eY~~RaE~lk~~~~~~~~~~~   78 (232)
                      .+.+|+.++++||++|++|+|++|+.+|.+||++|+.++ .++++..++.|++|+.+|++|||+||++|+..+..+.
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~LK~~l~~~~~~~~   87 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKEDGK   87 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            578999999999999999999999999999999999999 6899999999999999999999999999988876543

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=3.7e-20  Score=135.77  Aligned_cols=89  Identities=11%  Similarity=0.100  Sum_probs=62.9

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----CcccccCEEEEecCCccCCCCCChhHHhhcCCcC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA-----SLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP  190 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG-----~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~  190 (232)
                      ||+|++   +|+.  |++++|+|||++|+++||++|+.|+|     .|+||+|+|+|.+|..+ +.+....|...+.. .
T Consensus         1 Mv~i~i---~g~~--~~v~~g~tll~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~-~~~~~~~~~~~~~~-~   73 (95)
T d2fug33           1 MVRVKV---NDRI--VEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKG-PDGKPLLNEKGEPE-I   73 (95)
T ss_dssp             CEEEEC---SSCE--EEECTTCBHHHHHHHHTCCCCCCSCCTTSCCCSCSTTSEEEEEC--------------------C
T ss_pred             CcEEEE---CCEE--EEECCCCcHHHHHHhcCCCCCccccCCCcCcccccCCCEEEEccCccc-cCcccchhhhhhhH-h
Confidence            677884   6865  99999999999999999999999964     58999999999999754 44445555556653 4


Q ss_pred             CCCCCcEEeeeeEEecCCCceEEE
Q psy1437         191 FLKDNSRLGCQIILTKELEGIEVT  214 (232)
Q Consensus       191 ~~~~g~RLaCQ~~~~~dl~g~~V~  214 (232)
                      +..+++|||||+.+.+|   |+|+
T Consensus        74 ~~~~~~rlaCqt~v~~g---m~V~   94 (95)
T d2fug33          74 QWQPKLAASCVTAVADG---MVVD   94 (95)
T ss_dssp             CBCSSCEETTTCBCCTT---CEEE
T ss_pred             hcCCCccCcCcCCCCCC---CEEe
Confidence            66789999999999876   8886

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-19  Score=127.80  Aligned_cols=68  Identities=29%  Similarity=0.392  Sum_probs=63.1

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-cc-CChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-NS-SSDENVAAWRQKAQQYLNRAEVLKDKI   70 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~e-~~~~~~~~~~~k~~eY~~RaE~lk~~~   70 (232)
                      .+++|++++++||++|++|+|++|+.+|.+|+++|+.++ ++ .++..|+.|+.|+.+|++|||+||++|
T Consensus         7 ~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~RAE~LK~~l   76 (77)
T d1wr0a1           7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYL   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999999 56 467778999999999999999999875

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.76  E-value=1.6e-18  Score=128.00  Aligned_cols=88  Identities=16%  Similarity=0.264  Sum_probs=71.1

Q ss_pred             CCceeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCC
Q psy1437         113 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL  192 (232)
Q Consensus       113 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~  192 (232)
                      .+.-++|+| .++|++  |.+++|+|||++|+++||++|+.|+ .|.||+|+++|++|.++. .      ...|.  ++.
T Consensus        11 ~~~~~~V~l-~~~g~~--~~v~~~~slL~aa~~~Gi~ip~~C~-~G~CgtC~~~v~~G~v~~-~------~~~~~--~~~   77 (98)
T d2piaa3          11 ENTPFTVRL-SRSGTS--FEIPANRSILEVLRDANVRVPSSCE-SGTCGSCKTALCSGEADH-R------DMVLR--DDE   77 (98)
T ss_dssp             CCCCEEEEE-TTTCCE--EEECTTSCHHHHHHHTTCCCCCSCS-SSSSCTTEEEEEESCEEC-C------CSSCC--TTT
T ss_pred             CCCCEEEEE-eCCCEE--EEECcCCcHHHHHHhcCCcccccCC-ccEeCCCEEEEEeeceec-C------CCCCC--hHH
Confidence            345588997 588976  8999999999999999999999998 599999999999997532 1      12343  334


Q ss_pred             CCCcEEeeeeEEecCCCceEEEe
Q psy1437         193 KDNSRLGCQIILTKELEGIEVTL  215 (232)
Q Consensus       193 ~~g~RLaCQ~~~~~dl~g~~V~l  215 (232)
                      .++++|+||+++.+|  +++|+|
T Consensus        78 ~~~~~L~C~s~~~s~--~lvidl   98 (98)
T d2piaa3          78 KGTQIMVCVSRAKSA--ELVLDL   98 (98)
T ss_dssp             TTTEEETTTCEESSS--EEEECC
T ss_pred             hCCcEEEeeCEECCC--CEEEeC
Confidence            689999999999875  588875

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.75  E-value=3.2e-19  Score=130.64  Aligned_cols=90  Identities=19%  Similarity=0.346  Sum_probs=73.7

Q ss_pred             eEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCc
Q psy1437         117 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS  196 (232)
Q Consensus       117 v~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~  196 (232)
                      .+|||..++|. ++|.+.+|+|||++++++ +++|++|+ .|.||+|+++|++|.+.. .     +...|+ ..+..+|+
T Consensus         2 ~~Vt~~~~~~~-~~~~~~~~~~lLdaa~~~-~~lp~~Cr-~G~CgtC~~~v~~G~v~~-~-----~~~~L~-~~e~~~g~   71 (93)
T d1wria_           2 YKVTLKTPDGD-ITFDVEPGERLIDIGSEK-ADLPLSCQ-AGACSTCLGKIVSGTVDQ-S-----EGSFLD-DEQIEQGY   71 (93)
T ss_dssp             EEEEEEETTEE-EEEEECTTSCHHHHHHHH-SCCCCSSS-SSSSSTTEEEEEESCEEC-T-----TCCSCC-HHHHHTTE
T ss_pred             EEEEEEcCCCc-EEEEeCCCCcHHHHHHhC-CCEEEEeC-CcccCcCEeEeecceEec-c-----ccccCC-HhHHhcCe
Confidence            57888777764 579999999999999875 59999998 499999999999997642 1     123454 45677899


Q ss_pred             EEeeeeEEecCCCceEEEecCcc
Q psy1437         197 RLGCQIILTKELEGIEVTLPKAT  219 (232)
Q Consensus       197 RLaCQ~~~~~dl~g~~V~lp~~~  219 (232)
                      +|+||+++.+|   ++|+++.++
T Consensus        72 ~L~C~~~~~sD---~~ie~~~ed   91 (93)
T d1wria_          72 VLTCIAIPESD---VVIETHKED   91 (93)
T ss_dssp             EETTTCEESSC---EEEECCCGG
T ss_pred             EEeeeCEECCC---EEEEccCcC
Confidence            99999999999   999998764

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.66  E-value=1.1e-16  Score=123.37  Aligned_cols=84  Identities=19%  Similarity=0.265  Sum_probs=64.7

Q ss_pred             CCCEEEEEecCCchHHHHHHHCCCCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeeeEE
Q psy1437         125 DGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQIIL  204 (232)
Q Consensus       125 ~G~~~~v~~~~G~tLL~aa~~~gi~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~~~  204 (232)
                      ++...+|++++|+|||++|+++||++|+.|++ |.||+|+++|++|.+. +...     ..|+.......|+||+||+++
T Consensus        34 ~~~~~t~~v~~g~tlLdaa~~aGi~ip~~Cr~-G~CgsC~~~v~~G~~~-~~~~-----~~l~~~e~~~~g~~L~Cqa~p  106 (128)
T d1doia_          34 DEDYGSLEVNEGEYILEAAEAQGYDWPFSCRA-GACANCAAIVLEGDID-MDMQ-----QILSDEEVEDKNVRLTCIGSP  106 (128)
T ss_dssp             TTTEEEEECCTTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEE-ECCC-----SSSCHHHHHTSCEEEGGGEEE
T ss_pred             CCCceEEEECcCChHHHHHHHcCCCCccCCCC-CcCCCCceEeeeCCcc-cCcc-----cCCCHHHHHhCCEEEeeeCEE
Confidence            45545799999999999999999999999985 9999999999999754 2221     233322234569999999999


Q ss_pred             ecCCCceEEEecC
Q psy1437         205 TKELEGIEVTLPK  217 (232)
Q Consensus       205 ~~dl~g~~V~lp~  217 (232)
                      .+|  .++|.+..
T Consensus       107 ~sD--~v~v~~d~  117 (128)
T d1doia_         107 DAD--EVKIVYNA  117 (128)
T ss_dssp             CSS--EEEEEECG
T ss_pred             CCC--eEEEECCc
Confidence            998  45565544

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, N-terminal domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=98.61  E-value=3.1e-08  Score=75.02  Aligned_cols=69  Identities=17%  Similarity=0.394  Sum_probs=54.4

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC------CCCcccccCEEEEecCCccCCCCCChhHHhhcCCc
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC------EASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA  189 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C------gG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~  189 (232)
                      |++|++   ||+.  +++++|+|||++|+++||.||+.|      +-.|.|..|.|.|. |.                  
T Consensus         1 Mvti~I---dG~~--v~~~~G~til~aa~~~gi~IP~lC~~~~l~~~~G~Cr~C~Vev~-G~------------------   56 (126)
T d3c8ya2           1 MKTIII---NGVQ--FNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVE-GT------------------   56 (126)
T ss_dssp             CEEEEE---TTEE--EEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEET-TT------------------
T ss_pred             CcEEEE---CCEE--EEeCCCChHHHHHHHcCCccchhhhccCCCCCCccceeEEEEEc-cC------------------
Confidence            778885   6865  999999999999999999999999      22489999999984 31                  


Q ss_pred             CCCCCCcEEeeeeEEecCCCceEEEec
Q psy1437         190 PFLKDNSRLGCQIILTKELEGIEVTLP  216 (232)
Q Consensus       190 ~~~~~g~RLaCQ~~~~~dl~g~~V~lp  216 (232)
                           +..-||++.+..   ||+|.--
T Consensus        57 -----~~v~AC~t~v~~---GM~V~T~   75 (126)
T d3c8ya2          57 -----GLVTACDTLIED---GMIINTN   75 (126)
T ss_dssp             -----EEEEGGGCBCCT---TCEEESS
T ss_pred             -----ccccccccCCCC---CCEEEeC
Confidence                 013388888876   5888754

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Quinoline 2-oxidoreductase small subunit QorS, N-domain
species: Pseudomonas putida [TaxId: 303]

Probab=98.34  E-value=6.6e-07  Score=62.42  Aligned_cols=52  Identities=15%  Similarity=0.308  Sum_probs=45.2

Q ss_pred             ceeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         115 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       115 ~mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      +|++|+|. -+|+.++++++++++|++.+++. |+. ....|+ .|.||.|-|.|.
T Consensus         2 ~~~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~l~ltg~K~gC~-~G~CGACtVlvd   55 (81)
T d1t3qa2           2 QLMRISAT-INGKPRVFYVEPRMHLADALREVVGLTGTKIGCE-QGVCGSCTILID   55 (81)
T ss_dssp             CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEET
T ss_pred             CeEEEEEE-ECCEEEEEecCCCCCHHHHHhhhhCCcccccCCC-CcccCeeEEEEC
Confidence            58899986 89999999999999999999864 764 778897 799999999873

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=98.27  E-value=1.1e-06  Score=61.04  Aligned_cols=51  Identities=12%  Similarity=0.283  Sum_probs=44.4

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      |++++|. .+|+.+++.++++++|++.+++. |+. ....|+ .|.||.|-|.|.
T Consensus         1 M~~~~~~-lNG~~~~~~v~~~~~Lld~LR~~lgltg~K~gC~-~G~CGACtVlvd   53 (80)
T d1vlba2           1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCE-QGQCGACSVILD   53 (80)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEET
T ss_pred             CceEEEE-ECCEEEEEecCCCCCHHHHHhHhhCCcccccCcC-cCCCCeeEEEEC
Confidence            7888875 78999999999999999999975 764 778898 899999999873

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=98.04  E-value=3.6e-06  Score=58.43  Aligned_cols=50  Identities=18%  Similarity=0.357  Sum_probs=42.8

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEE
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYV  167 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v  167 (232)
                      |-+++|. .+|+.+++.+.++++|++.+++. |+ .....|+ .|.||.|-|.|
T Consensus         1 M~~~~~~-vNG~~~~~~v~p~~~Ll~~LR~~~gltgtK~GC~-~G~CGACtV~v   52 (80)
T d1dgja2           1 METKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCG-KGQCGACTVIL   52 (80)
T ss_dssp             CEEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE
T ss_pred             CceEEEE-ECCEEEEEEcCCCCCHHHHHhhhhCCceeccCCC-CCCCCeeEEEE
Confidence            5567765 78988899999999999999975 76 4678898 89999999998

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=7.6e-06  Score=59.61  Aligned_cols=62  Identities=18%  Similarity=0.376  Sum_probs=47.4

Q ss_pred             EEEEEecCCchHHHHHH----HCC--CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeee
Q psy1437         128 RREIKGKVGDNVLYLAH----RYE--IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQ  201 (232)
Q Consensus       128 ~~~v~~~~G~tLL~aa~----~~g--i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ  201 (232)
                      .++|.+.+|.|+|+++.    ..+  +...++|+ .|.||+|.+.|- |.                        .||||+
T Consensus        25 ~y~v~~~~~~tvLd~L~~Ik~~~d~sLsfr~sCr-~giCGsCam~IN-G~------------------------~~LAC~   78 (105)
T d1kf6b2          25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVN-NV------------------------PKLACK   78 (105)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCS-SSSSCCCEEEET-TE------------------------EEEGGG
T ss_pred             EEEEecCCCCcHHHHHHHHHHhcCCcceEEeccC-CCCCCCCeEEEC-Cc------------------------ccccce
Confidence            36788899999999983    222  55689998 799999999984 31                        289999


Q ss_pred             eEEecCCCceEEEe
Q psy1437         202 IILTKELEGIEVTL  215 (232)
Q Consensus       202 ~~~~~dl~g~~V~l  215 (232)
                      +.+..-.++++|+-
T Consensus        79 t~v~~~~~~i~ieP   92 (105)
T d1kf6b2          79 TFLRDYTDGMKVEA   92 (105)
T ss_dssp             CBGGGCTTCEEEEC
T ss_pred             eEeeccCCCeEEEE
Confidence            98876445688874

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]

Probab=97.88  E-value=1.9e-05  Score=54.49  Aligned_cols=49  Identities=18%  Similarity=0.387  Sum_probs=40.8

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      +++++   -+|+.+++.+.++++|++.+++. |+. ....|+ .|.||.|-|.|.
T Consensus         3 ~i~~~---vNG~~~~~~v~~~~~Ll~~LR~~~gl~gtK~GC~-~G~CGaCTVlvd   53 (79)
T d1ffva2           3 IITVN---VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCE-TSHCGACTVDID   53 (79)
T ss_dssp             EEEEE---ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEET
T ss_pred             EEEEE---ECCEEEEEeCCCCCCHHHHHhhhcCCcccccCCc-cccccccEEecC
Confidence            45555   47988899999999999999985 764 678998 799999999873

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
species: Thauera aromatica [TaxId: 59405]

Probab=97.85  E-value=1.7e-05  Score=54.96  Aligned_cols=48  Identities=19%  Similarity=0.318  Sum_probs=39.9

Q ss_pred             EEEEeCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         119 ITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       119 Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      |+|. -+|+.+++.++++++|++++++. |+. ....|+ .|.||.|-|.|.
T Consensus         5 i~~~-lNG~~~~~~v~~~~~Ll~~LR~~lgltgtK~gC~-~G~CGACTVlvd   54 (81)
T d1rm6c2           5 LRLT-LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCD-GGECGACTVLVD   54 (81)
T ss_dssp             EEEE-ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSS-SSSSCTTEEEET
T ss_pred             EEEE-ECCEEEEEecCCCCCHHHHHHHhhCCcccccCCc-cccCCccEEeEC
Confidence            4443 57988889999999999999875 764 778998 799999999873

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]

Probab=97.80  E-value=2.9e-05  Score=53.52  Aligned_cols=49  Identities=14%  Similarity=0.289  Sum_probs=41.3

Q ss_pred             EEEEEeCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCCcccccCEEEEe
Q psy1437         118 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK  168 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~-gi-~l~~~CgG~G~CgtC~v~v~  168 (232)
                      .|+|. .+|+.+.+.+.++++|++.+++. |+ .....|+ .|.||.|-|.|.
T Consensus         3 ~i~~~-lNG~~~~~~v~p~~~Ll~~LR~~~~ltgtK~GC~-~G~CGaCTVlvd   53 (79)
T d1n62a2           3 HIELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCD-TSHCGACTVDLD   53 (79)
T ss_dssp             EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEET
T ss_pred             eEEEE-ECCEEEEEecCCCCcHHHHHhhhcCCcccccCCc-cccccccEEEeC
Confidence            46654 68999899999999999999965 76 4788998 799999999874

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine dehydrogenase chain A, N-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.67  E-value=4.9e-05  Score=52.97  Aligned_cols=49  Identities=20%  Similarity=0.506  Sum_probs=41.4

Q ss_pred             EEEEEeCCCCEEEEEec-CCchHHHHHHHCCCC-ccCCCCCCcccccCEEEEe
Q psy1437         118 NITFIDKDGKRREIKGK-VGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       118 ~Vt~~~~~G~~~~v~~~-~G~tLL~aa~~~gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      +|+|. -+|+.+++... ++++|++.+++.|+. ....|+ .|.||.|-|.|.
T Consensus         2 ~i~f~-vNG~~~~~~~~~~~~~Ll~~LR~~~ltgtK~GC~-~G~CGACtVlvd   52 (84)
T d1jroa2           2 EIAFL-LNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCN-EGDCGACTVMIR   52 (84)
T ss_dssp             EEEEE-ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCS-SSSSCTTEEEEE
T ss_pred             EEEEE-ECCEEEEEEcCCCCCcHHHHHHHCCCccCccCcC-CcccceeEEEEE
Confidence            46664 68998888875 689999999999875 778998 799999999995

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

Probab=97.65  E-value=2.4e-05  Score=56.98  Aligned_cols=52  Identities=13%  Similarity=0.446  Sum_probs=39.8

Q ss_pred             EEEEecCCchHHHHHH---H-CC--CCccCCCCCCcccccCEEEEecCCccCCCCCChhHHhhcCCcCCCCCCcEEeeee
Q psy1437         129 REIKGKVGDNVLYLAH---R-YE--IPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQI  202 (232)
Q Consensus       129 ~~v~~~~G~tLL~aa~---~-~g--i~l~~~CgG~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~RLaCQ~  202 (232)
                      ++|...+|.|+|+++.   + .+  +...++|+ .|.||+|.+.|- |.                        .+|||++
T Consensus        26 y~v~~~~~~tvld~L~~Ik~~~D~sl~fr~sCr-~giCGsCam~IN-G~------------------------~~lAC~t   79 (106)
T d2bs2b2          26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICGSCGMMIN-GR------------------------PSLACRT   79 (106)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEET-TE------------------------EEEGGGC
T ss_pred             EEecCCCCCcHHHHHHHHHHhcCCcEEEEeCcC-CCCCCcceEEEC-Cc------------------------cccceee
Confidence            5677788999999984   2 22  56788998 799999999983 41                        1799999


Q ss_pred             EEec
Q psy1437         203 ILTK  206 (232)
Q Consensus       203 ~~~~  206 (232)
                      .+..
T Consensus        80 ~v~~   83 (106)
T d2bs2b2          80 LTKD   83 (106)
T ss_dssp             BGGG
T ss_pred             eeec
Confidence            8764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.00084  Score=45.91  Aligned_cols=67  Identities=10%  Similarity=0.112  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETAN-SSSDENVAAWRQKAQQYLNRAEVLKDKI   70 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~-e~~~~~~~~~~~k~~eY~~RaE~lk~~~   70 (232)
                      ++.|=-.-++|=.+=++|+|+|||.||+.|+.+|..+++ .+++.....|.-...-|+.-.+-|+...
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~klt~s~~~l~SLqLQ~~~hlKQ~~~i~~r~   72 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQERW   72 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777789999999999999999999999999999994 5677777788877777887777666543

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine oxidase, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.28  E-value=0.00018  Score=50.65  Aligned_cols=48  Identities=19%  Similarity=0.380  Sum_probs=39.1

Q ss_pred             EEEEeCCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCCcccccCEEEEe
Q psy1437         119 ITFIDKDGKRREI-KGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVK  168 (232)
Q Consensus       119 Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~-gi~-l~~~CgG~G~CgtC~v~v~  168 (232)
                      |+|. -+|+.+.+ .+++++|||+.++.+ |+. ....|+ .|.||.|-|.|.
T Consensus         4 i~F~-lNG~~~~~~~~~p~~tLl~~LR~~~~ltGtK~GC~-~G~CGACTVlv~   54 (90)
T d1v97a2           4 LVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLS   54 (90)
T ss_dssp             EEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred             EEEE-ECCEEEEEccCCCCCCHHHHHHhhcCCCccccCcC-CcccceeEEEEc
Confidence            6665 67877655 478899999999976 774 778998 899999999885

>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: USP8 N-terminal domain-like
family: USP8 N-terminal domain-like
domain: Ubiquitin carboxyl-terminal hydrolase 8, USH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0097  Score=44.35  Aligned_cols=71  Identities=10%  Similarity=0.162  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh-c--c--CChHHH-HHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy1437           3 LPEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA-N--S--SSDENV-AAW-RQKAQQYLNRAEVLKDKIQVMF   74 (232)
Q Consensus         3 ~~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~-~--e--~~~~~~-~~~-~~k~~eY~~RaE~lk~~~~~~~   74 (232)
                      ++..|.++.+.|-.+..+|+.+.|+.+|..-+.+| ..+ .  +  ...... ..+ ...+..=+++||.||..|...-
T Consensus        31 y~rsa~~l~~~A~~y~~egd~E~AYily~Ry~~L~-eki~kHpdyk~~~~~~~~~l~~~~~~~~l~~~E~Lk~~L~~rY  108 (134)
T d2a9ua1          31 YVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVY-NLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRY  108 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHcCcccccchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999988 445 2  1  121122 222 3456778999999999997544

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.013  Score=41.88  Aligned_cols=37  Identities=11%  Similarity=0.256  Sum_probs=26.6

Q ss_pred             EEecCC--chHHHHHHH---CC--CCccCCCCCCcccccCEEEEe
Q psy1437         131 IKGKVG--DNVLYLAHR---YE--IPMEGACEASLACTTCHVYVK  168 (232)
Q Consensus       131 v~~~~G--~tLL~aa~~---~g--i~l~~~CgG~G~CgtC~v~v~  168 (232)
                      |.+.++  .++|+++..   ++  +...++|+ .|.||+|.+.|-
T Consensus        25 v~~~~~~~~~vl~~L~~i~e~D~sLsfr~sCr-~giCGsCam~IN   68 (106)
T d1nekb2          25 LEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCGSDGLNMN   68 (106)
T ss_dssp             CCCCSSSCCBHHHHHHHHHHHCTTCCCCCCSS-SSCSCTTEEEET
T ss_pred             EeecCCccHHHHHHHHHHhccCCCEEEEcCCC-CCCCCcceEEEc
Confidence            444444  478888664   33  55678998 799999999983

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.88  E-value=0.059  Score=39.55  Aligned_cols=63  Identities=16%  Similarity=0.129  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHhccCChHHHH-HHHHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLETANSSSDENVA-AWRQKAQQYLNRAEVL   66 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~e~~~~~~~-~~~~k~~eY~~RaE~l   66 (232)
                      ++.|..+-.++..+=+.|+|++|+.+|++|++++...-...+..... ...-++.-|.+||.-.
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~   77 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHH
Confidence            46788888899999999999999999999998765432112222211 2223345566666543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=92.46  E-value=0.18  Score=37.22  Aligned_cols=35  Identities=11%  Similarity=0.053  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437           5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLE   39 (232)
Q Consensus         5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   39 (232)
                      +.|-.+-.++..+=..|+|++|+.+|.+||.++-.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~   47 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEM   47 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            44666667888899999999999999999987653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.26  Score=36.52  Aligned_cols=35  Identities=14%  Similarity=0.124  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q psy1437           5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARFLLE   39 (232)
Q Consensus         5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   39 (232)
                      +.|..+-.++..+=+.|+|++|+.+|++||+++..
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~   45 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY   45 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            44566667788888899999999999999987654

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=90.04  E-value=0.061  Score=40.09  Aligned_cols=33  Identities=24%  Similarity=0.196  Sum_probs=22.9

Q ss_pred             hHHHHHHHCCC-----CccCCCCCCcccccCEEEEecCC
Q psy1437         138 NVLYLAHRYEI-----PMEGACEASLACTTCHVYVKHEY  171 (232)
Q Consensus       138 tLL~aa~~~gi-----~l~~~CgG~G~CgtC~v~v~~g~  171 (232)
                      .+.+.+.+.|.     .-...|| .|.||+|.+.+.+|.
T Consensus       103 ~v~~~~~~~g~~~vsle~~m~Cg-~GiCg~C~~~~~~g~  140 (160)
T d1ep3b2         103 AVAKKYDQLERLYISMESRMACG-IGACYACVEHDKEDE  140 (160)
T ss_dssp             HHHHHTTTCSSEEEECCCCCSSS-SSSSCTTEEEETTEE
T ss_pred             HHHHHHHhcCCceEEecccccCC-CcccCcCcceecCCC
Confidence            44445555662     2235897 799999999998774

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.14  E-value=0.14  Score=34.00  Aligned_cols=31  Identities=16%  Similarity=0.364  Sum_probs=26.0

Q ss_pred             EEEEeCCCCEEEEEecCCchHHHHHH----HCCCC
Q psy1437         119 ITFIDKDGKRREIKGKVGDNVLYLAH----RYEIP  149 (232)
Q Consensus       119 Vt~~~~~G~~~~v~~~~G~tLL~aa~----~~gi~  149 (232)
                      |+++.++|++.+|.+.+|.+|++++.    ..|++
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~   37 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN   37 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCC
Confidence            78889999999999999999988765    45664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.58  E-value=0.28  Score=35.53  Aligned_cols=32  Identities=16%  Similarity=0.123  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437           4 PEEVINAAQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      +++|-.+.++|-.+=+.|+|++|+.+|++|++
T Consensus         7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~   38 (159)
T d1a17a_           7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIE   38 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc
Confidence            46778888888888888999988888888775

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.41  E-value=0.81  Score=33.24  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHh
Q psy1437           7 VINAAQMAVKFDEENQDEIAAYYYQAAARFLLETA   41 (232)
Q Consensus         7 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~   41 (232)
                      |-.+-.++..+=..|+|++|+.+|.+||+++....
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~   61 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR   61 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh
Confidence            34455668888899999999999999998876544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.82  E-value=0.62  Score=33.57  Aligned_cols=32  Identities=13%  Similarity=0.106  Sum_probs=27.4

Q ss_pred             HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Q psy1437           9 NAAQMAVKFDEENQDEIAAYYYQAAARFLLET   40 (232)
Q Consensus         9 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   40 (232)
                      .+.++|+-+..-|+|++|+.+|++|+++....
T Consensus       102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            35677889999999999999999999877653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=0.61  Score=30.95  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=15.9

Q ss_pred             HHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy1437          12 QMAVKFDEENQDEIAAYYYQAAARFL   37 (232)
Q Consensus        12 ~~Av~~D~~g~~~~A~~~Y~~ai~~l   37 (232)
                      ..++.+=+.|+|++|+.+|++|++.+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~   35 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQL   35 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            34455556666777777777666544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=1.2  Score=30.81  Aligned_cols=32  Identities=9%  Similarity=0.166  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q psy1437           5 EEVINAAQMAVKFDEENQDEIAAYYYQAAARF   36 (232)
Q Consensus         5 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   36 (232)
                      ++|+.+-.....+=..|+|++|+.+|++||++
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~   33 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL   33 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35666677777788889999999999998864

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=0.55  Score=32.27  Aligned_cols=30  Identities=17%  Similarity=0.035  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437           6 EVINAAQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus         6 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      ++-++-.+|-.+=+.|+|++|+.+|.+||+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~   31 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK   31 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345566667777777888888888887764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=1.7  Score=30.24  Aligned_cols=16  Identities=19%  Similarity=0.090  Sum_probs=7.6

Q ss_pred             hhcCHHHHHHHHHHHH
Q psy1437          19 EENQDEIAAYYYQAAA   34 (232)
Q Consensus        19 ~~g~~~~A~~~Y~~ai   34 (232)
                      +.|+|++|+.+|++++
T Consensus        84 ~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          84 RLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHH
Confidence            3444455544444444

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=80.72  E-value=0.6  Score=29.28  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=27.1

Q ss_pred             eeEEEEEeCCCCEEEEEecCCchHHHHHHHCCCCccCCC
Q psy1437         116 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC  154 (232)
Q Consensus       116 mv~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~l~~~C  154 (232)
                      |++|||  |+|..  .+++.|.|.+|.|..-+-.+...|
T Consensus         1 M~~Itl--PDG~~--~~~~~g~T~~diA~~I~~~l~k~a   35 (62)
T d1tkea1           1 MPVITL--PDGSQ--RHYDHAVSPMDVALDIGPGLAKAC   35 (62)
T ss_dssp             CCEEEC--TTSCE--EECSSCBCHHHHHHHHCHHHHHHC
T ss_pred             CCEEEC--CCCCE--EEcCCCCCHHHHHHHHCchhhheE
Confidence            788885  99987  556899999999998765554433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.05  E-value=4.5  Score=28.53  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHHHHhhhh-------------------cCHHHHHHHHHHHHHHHHHHh
Q psy1437           4 PEEVINAAQMAVKFDEE-------------------NQDEIAAYYYQAAARFLLETA   41 (232)
Q Consensus         4 ~~~A~~~~~~Av~~D~~-------------------g~~~~A~~~Y~~ai~~l~~~~   41 (232)
                      +++|+...++|++.|..                   ++..++...|.+|+++|.+++
T Consensus        57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal  113 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV  113 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc
Confidence            46788888888888753                   233455566777888887777

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.04  E-value=1.2  Score=30.95  Aligned_cols=25  Identities=12%  Similarity=0.053  Sum_probs=14.9

Q ss_pred             HHHHHHhhhhcCHHHHHHHHHHHHH
Q psy1437          11 AQMAVKFDEENQDEIAAYYYQAAAR   35 (232)
Q Consensus        11 ~~~Av~~D~~g~~~~A~~~Y~~ai~   35 (232)
                      ..+|.-+-..|+|++|+.+|.+||+
T Consensus        42 ~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_          42 TNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3444444566666666666666665