Psyllid ID: psy14385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MSISGTDTKKEERLIKSARNQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFRTNLSCDANVH
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHccccccEEEEEEEccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccEEEEEEccEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHcccccccccccccEEEcccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHcccccccEEEEEEcHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccEEEEEEcccEEEEEEEHHHcccccccccccc
Coil and Loop (DISEMBL)
msisgtdtKKEERLIKSARNQILSLNlsvpfgavvnlkpnyeedtqwNDILRakgiipqkekevtEDDIVNLVEQTVKEKqgkgekelgdmdlddldeledEEDERVLQEYRRKRIAEMKAMAEKSRFgrvleingdtYVQEVNNAGEGIWVVLHFIPLCSLINNHLSElaakfpttkfiksisttcipnypdknlptlFIYFEGkmqsqmvgpdefrtnlscdanvh
Flexible Loop (DISEMBL)
msisgtdtkkeeRLIKSARNQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGiipqkekevtedDIVNLVEQtvkekqgkgekelgdmdlddldeledeederVLQEYRRKRIAEMKamaeksrfgrvleiNGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISttcipnypdkNLPTLFIYFEGKMQSQMVGPDEFRTNLSCDANVH
Low Complexity Region (SEG)
MSISGTDTKKEERLIKSARNQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVkekqgkgekelgdmdlddldeledeedeRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFRTNLSCDANVH
Disordered region (IsUnstruct)
*******************NQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQ********DIVNL******************************************************RFGRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK**********************
Disordered Region (DISOPRED)
***********************SLNLS*PFG***NLKPNYEEDTQWNDILRAKGII*****************************************LEDEEDERVLQEYRR****************RVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFRTNLS*D**VH
Disordered Region (DISEMBL)
**********EERLIKSARNQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFRTNLSCDANVH
Disordered Region (DISPRO)
*******TKKEERLIKSARNQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSISGTDTKKEERLIKSARNQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFRTNLSCDANVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q8MR62	240	Viral IAP-associated fact	yes	N/A	0.789	0.75	0.561	3e-59
Q5RB77	239	Phosducin-like protein 3	yes	N/A	0.75	0.715	0.535	4e-48
Q4KLJ8	240	Phosducin-like protein 3	yes	N/A	0.785	0.745	0.539	4e-47
Q9H2J4	239	Phosducin-like protein 3	yes	N/A	0.763	0.728	0.522	1e-46
Q6P268	239	Phosducin-like protein 3	yes	N/A	0.785	0.748	0.537	6e-45
Q0VCW8	240	Phosducin-like protein 3	yes	N/A	0.767	0.729	0.497	4e-43
Q8BVF2	240	Phosducin-like protein 3	yes	N/A	0.793	0.754	0.513	8e-42
Q8N4E4	241	Phosducin-like protein 2	no	N/A	0.75	0.709	0.441	1e-34
Q32LN3	242	Phosducin-like protein 2	no	N/A	0.75	0.706	0.430	1e-33
Q78Y63	240	Phosducin-like protein 2	no	N/A	0.75	0.712	0.418	8e-32

>sp|Q8MR62|VIAF1_DROME Viral IAP-associated factor homolog OS=Drosophila melanogaster GN=viaf PE=1 SV=1

 Score =  228 bits (580), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 149/194 (76%), Gaps = 14/194 (7%)

Query: 39  PNYEEDTQWNDILRAKGII-PQ-KEKEVTEDDIVNLVEQTVKEK------QGKGEKELGD 90
           PN  EDT+WND+LRAKGII P+ KE E+TED I  L++  ++ +      +G+ +K++ D
Sbjct: 4   PN--EDTEWNDVLRAKGIIGPKAKEAEITEDQIQKLMDDAIQRRTDLPLNEGQRDKKIDD 61

Query: 91  MDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGI 150
           M LD+LDELED EDE VL++YR++RIAEM+A AEK+RFG V EI+G  YV EV  AGEGI
Sbjct: 62  MSLDELDELEDSEDEAVLEQYRQRRIAEMRATAEKARFGSVREISGQDYVNEVTKAGEGI 121

Query: 151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK 206
           WVVLH     +PLC+LI++H+ +LA +FP TKF++S++TTCIPN+P+KNLPT+FIY EG 
Sbjct: 122 WVVLHLYANGVPLCALIHHHMQQLAVRFPQTKFVRSVATTCIPNFPEKNLPTIFIYHEGA 181

Query: 207 MQSQMVGPDEFRTN 220
           ++ Q +GP E R +
Sbjct: 182 LRKQYIGPLELRGD 195

Modulates the activation of caspases during apoptosis.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RB77|PDCL3_PONAB Phosducin-like protein 3 OS=Pongo abelii GN=PDCL3 PE=2 SV=1

 Score =  191 bits (485), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 128/181 (70%), Gaps = 10/181 (5%)

Query: 44  DTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELED-- 101
           DT+WNDILR KGI+P KE     ++     ++ +++   K  +   DM L++LD+ ED  
Sbjct: 7   DTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYE---DMTLEELDDHEDEF 63

Query: 102 -EEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF---- 156
            EEDER ++ YRR+R+AE K    K++FG VLEI+G  YVQEV  AGEG+WV+LH     
Sbjct: 64  NEEDERAIEMYRRQRLAEWKVTKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQG 123

Query: 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
           IPLC+LIN HLS LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q +GP  
Sbjct: 124 IPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLV 183

Query: 217 F 217
           F
Sbjct: 184 F 184

Modulates the activation of caspases during apoptosis.

Pongo abelii (taxid: 9601)

>sp|Q4KLJ8|PDCL3_RAT Phosducin-like protein 3 OS=Rattus norvegicus GN=Pdcl3 PE=2 SV=1

 Score =  187 bits (476), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 128/189 (67%), Gaps = 10/189 (5%)

Query: 44  DTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDE- 102
           DT+WNDILR KGI+P KE             +  +  Q    K   DM L++L E EDE 
Sbjct: 7   DTEWNDILRKKGILPPKESLKEL--EEEEEGKEEQRLQQSVVKTYEDMTLEELQENEDEF 64

Query: 103 --EDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF---- 156
             EDER ++ YR++R+AE KA   +++FG VLEI+G  YVQEV  AGEG+WVVLH     
Sbjct: 65  SEEDERAIEMYRQQRLAEWKATQLRNKFGEVLEISGKDYVQEVTKAGEGLWVVLHLYKQG 124

Query: 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
           IPLCSLIN+HLS LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q +GP  
Sbjct: 125 IPLCSLINHHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIKAQFIGPLV 184

Query: 217 F-RTNLSCD 224
           F   NL+ D
Sbjct: 185 FGGMNLTID 193

Modulates the activation of caspases during apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9H2J4|PDCL3_HUMAN Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 PE=1 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 128/178 (71%), Gaps = 4/178 (2%)

Query: 44  DTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEE 103
           DT+WNDILR KGI+P KE     ++     ++ +++   K  +++   +L+D ++  +EE
Sbjct: 7   DTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEE 66

Query: 104 DERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPL 159
           DER ++ YRR+R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+LH     IPL
Sbjct: 67  DERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPL 126

Query: 160 CSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217
           C+LIN HLS LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q +GP  F
Sbjct: 127 CALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLVF 184

Modulates the activation of caspases during apoptosis. Is a substrate for Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) IAP-mediated ubiquitination.

Homo sapiens (taxid: 9606)

>sp|Q6P268|PDCL3_DANRE Phosducin-like protein 3 OS=Danio rerio GN=pdcl3 PE=2 SV=1

 Score =  180 bits (457), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 100/186 (53%), Positives = 133/186 (71%), Gaps = 7/186 (3%)

Query: 44  DTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEE 103
           DT+WNDILR KGI+P KE  V E++   L  Q+  +   K  +++   +L++ ++   EE
Sbjct: 7   DTEWNDILRKKGILPPKETPVEEEEDEQLHLQS--QSVVKTYEDMTLEELEENEDEFSEE 64

Query: 104 DERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPL 159
           DE  ++ YR KR+AE KA   K+ FG + EI+G  YVQEVN AGEGIWVVLH     IPL
Sbjct: 65  DEHAMEMYRLKRLAEWKANQMKNVFGELKEISGQDYVQEVNKAGEGIWVVLHLYKQGIPL 124

Query: 160 CSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF-R 218
           CSLIN HL++LA KFP +KF+KSIS+TCIPNYPD+NLPTLF+Y +G+M++Q +GP  F  
Sbjct: 125 CSLINQHLAQLARKFPQSKFLKSISSTCIPNYPDRNLPTLFVYRDGEMKAQFIGPLVFGG 184

Query: 219 TNLSCD 224
            NL+CD
Sbjct: 185 MNLTCD 190

Modulates the activation of caspases during apoptosis.

Danio rerio (taxid: 7955)

>sp|Q0VCW8|PDCL3_BOVIN Phosducin-like protein 3 OS=Bos taurus GN=PDCL3 PE=2 SV=1

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 134/193 (69%), Gaps = 18/193 (9%)

Query: 44  DTQWNDILRAKGIIPQKEKEVTEDDIVNLV-------EQTVKEKQGKGEKELGDMDLDDL 96
           DT+WNDILR KGI+P KE      D+ +L        ++ +++   K  +++   +L+D 
Sbjct: 7   DTEWNDILRKKGILPSKE------DLKDLEKEAEEEEQRILQQSIVKTYEDMTLEELEDN 60

Query: 97  DELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF 156
           ++  +EEDER ++ YR++R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+LH 
Sbjct: 61  EDEFNEEDERAIEMYRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHL 120

Query: 157 ----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
               IPLC+LIN HLS LA KFP  KFIK+ISTTCIP+YPD+NLPT+F+Y EG +++Q +
Sbjct: 121 YKQGIPLCALINQHLSALARKFPDVKFIKAISTTCIPSYPDRNLPTVFVYLEGDIKAQFI 180

Query: 213 GPDEF-RTNLSCD 224
           GP  F   NL+ D
Sbjct: 181 GPLVFGGMNLTLD 193

Modulates the activation of caspases during apoptosis.

Bos taurus (taxid: 9913)

>sp|Q8BVF2|PDCL3_MOUSE Phosducin-like protein 3 OS=Mus musculus GN=Pdcl3 PE=1 SV=1

 Score =  170 bits (430), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 132/187 (70%), Gaps = 6/187 (3%)

Query: 44  DTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQG-KGEKELGDMDLDDLDELEDE 102
           DT+WNDILR KGI+P KE     ++     E+ + ++   K  +++   +L++ ++   E
Sbjct: 7   DTEWNDILRKKGILPPKESLKELEEEEAEKEEQLLQQSVVKTYEDMTLEELEENEDEFSE 66

Query: 103 EDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IP 158
           EDER ++ YR++R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+LH     IP
Sbjct: 67  EDERAIEMYRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIP 126

Query: 159 LCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF- 217
           LCSLIN+HLS LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q +GP  F 
Sbjct: 127 LCSLINHHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIKAQFIGPLVFG 186

Query: 218 RTNLSCD 224
             NL+ D
Sbjct: 187 GMNLTID 193

Modulates the activation of caspases during apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8N4E4|PDCL2_HUMAN Phosducin-like protein 2 OS=Homo sapiens GN=PDCL2 PE=1 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 121/179 (67%), Gaps = 8/179 (4%)

Query: 39  PNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDE 98
           PN  EDT+WNDILR  GI+P KE+  ++D+I  +V +  KE   K  +++    L + ++
Sbjct: 4   PN--EDTEWNDILRDFGILPPKEE--SKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAED 59

Query: 99  LEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-- 156
             DEED + ++ YR+KR+ E KA+ +K +FG + EI+G+ YV EV NA E +WV++H   
Sbjct: 60  EFDEEDMQAVETYRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLYR 119

Query: 157 --IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
             IP+C L+N HLS LA KFP TKF+K+I  +CI +Y D  LPT+F+Y  G+++++ +G
Sbjct: 120 SSIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIG 178

May play a role in germ cell maturation.

Homo sapiens (taxid: 9606)

>sp|Q32LN3|PDCL2_BOVIN Phosducin-like protein 2 OS=Bos taurus GN=PDCL2 PE=2 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 120/179 (67%), Gaps = 8/179 (4%)

Query: 39  PNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDE 98
           PN  EDT+WN+ILR  GI+P KE+   +D+I  +V +  KE   K  +++   +L + ++
Sbjct: 4   PN--EDTEWNEILRDFGILPPKEE--PKDEIEEMVLRLQKEAMVKPYEKMTLAELKEAED 59

Query: 99  LEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-- 156
             D+ED + ++ YR KR+ E KA+ +K +FG + EI+G+ YV EV NA + +WV++H   
Sbjct: 60  EFDDEDMKAIEIYREKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEKDVWVIIHLYR 119

Query: 157 --IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
             IPLC L+N HLS LA KFP TKF+K+I+ +CI +Y D  LPT+F+Y  G+++ + +G
Sbjct: 120 SSIPLCLLVNQHLSLLARKFPETKFVKAIANSCIEHYHDNCLPTIFVYKNGQIEGKFIG 178

May play a role in germ cell maturation.

Bos taurus (taxid: 9913)

>sp|Q78Y63|PDCL2_MOUSE Phosducin-like protein 2 OS=Mus musculus GN=Pdcl2 PE=1 SV=1

 Score =  137 bits (344), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 118/179 (65%), Gaps = 8/179 (4%)

Query: 39  PNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDE 98
           PN  EDT+WN+ILR  GI+P KE+   +D+I  +V +  +E   K  +++    L + ++
Sbjct: 4   PN--EDTEWNEILRNFGILPPKEE--PKDEIEEMVLRLQQEAMVKPYEKMTLAQLKEAED 59

Query: 99  LEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-- 156
             DEED + ++ YR KR+ E KA+ +K +FG + EI+G+ YV EV NA + +WVV+H   
Sbjct: 60  EFDEEDIKAIEIYREKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEKDLWVVIHLYR 119

Query: 157 --IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
             +P+C ++N HLS LA KFP TKF+K+I  +CI +Y D  LPT+F+Y  G+++ + +G
Sbjct: 120 SSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCIEHYHDNCLPTIFVYKNGQIEGKFIG 178

May play a role in germ cell maturation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
357602340	229	hypothetical protein KGM_14192 [Danaus p	0.811	0.807	0.615	6e-66
157116720	232	viral IAP-associated factor, putative [A	0.802	0.788	0.614	2e-62
170043770	233	viral IAP-associated factor [Culex quinq	0.802	0.785	0.590	2e-61
242004028	237	conserved hypothetical protein [Pediculu	0.798	0.767	0.684	2e-60
195022352	240	GH14439 [Drosophila grimshawi] gi|193899	0.780	0.741	0.567	1e-58
195427691	241	GK17253 [Drosophila willistoni] gi|19415	0.780	0.738	0.570	2e-58
195160295	240	GL25063 [Drosophila persimilis] gi|19411	0.780	0.741	0.562	3e-58
125978515	240	GA15005 [Drosophila pseudoobscura pseudo	0.780	0.741	0.562	3e-58
194748395	240	GF24491 [Drosophila ananassae] gi|190623	0.780	0.741	0.572	4e-58
195379106	240	GJ13906 [Drosophila virilis] gi|19415548	0.789	0.75	0.567	5e-58

>gi|357602340|gb|EHJ63363.1| hypothetical protein KGM_14192 [Danaus plexippus]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 117/190 (61%), Positives = 156/190 (82%), Gaps = 5/190 (2%)

Query: 40  NYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDEL 99
           N  EDT+WNDILR+KGIIP KEKEV+E++IVN++E+T+++KQ + EK+L ++DLD LDEL
Sbjct: 3   NPNEDTEWNDILRSKGIIPPKEKEVSEEEIVNMIEETIQKKQAEKEKQLSELDLDGLDEL 62

Query: 100 EDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF--- 156
           ED EDE VL+E+RRKRIAE+K ++EK RFG V E++G  YVQEVN AGEGIWVV+H    
Sbjct: 63  EDSEDEAVLEEFRRKRIAELKRLSEKPRFGEVREVSGQEYVQEVNKAGEGIWVVIHLYKQ 122

Query: 157 -IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPD 215
            I  C+LIN H+ +LAAK+P TKF+K+ + TCIPN+P++NLP+LF+YFEG M+ Q +GP 
Sbjct: 123 GIQQCALINQHMKQLAAKYPYTKFLKAFAQTCIPNFPERNLPSLFVYFEGDMKKQFIGPH 182

Query: 216 EFR-TNLSCD 224
           E R T+L+CD
Sbjct: 183 ELRGTSLTCD 192

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116720|ref|XP_001652851.1| viral IAP-associated factor, putative [Aedes aegypti] gi|108876337|gb|EAT40562.1| AAEL007713-PA [Aedes aegypti]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 153/192 (79%), Gaps = 9/192 (4%)

Query: 39  PNYEEDTQWNDILRAKGII-PQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLD 97
           PN  EDT+WND+LRAKGI+ P+KEKE+TEDDI+ ++E T+++KQ +  K L +M LD+LD
Sbjct: 4   PN--EDTEWNDVLRAKGILPPKKEKEITEDDIIGMIENTIEQKQNQS-KNLSNMGLDELD 60

Query: 98  ELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF- 156
            LED EDE VL EYR+KRIAEM+AMA+K++FG V+EI+G  YVQEV  AG  I+VVLH  
Sbjct: 61  ALEDSEDEAVLLEYRQKRIAEMQAMAQKAKFGTVMEISGQDYVQEVTKAGSEIYVVLHLY 120

Query: 157 ---IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
              +P C+LIN HLS+LA +FP TKFIK+I+TTCIPNYP++NLPT+FIY+EG+M+ Q VG
Sbjct: 121 SRGVPFCTLINQHLSQLAMRFPATKFIKAIATTCIPNYPERNLPTIFIYYEGQMKKQFVG 180

Query: 214 PDEF-RTNLSCD 224
             E    NLSC+
Sbjct: 181 SVELGGPNLSCE 192

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043770|ref|XP_001849547.1| viral IAP-associated factor [Culex quinquefasciatus] gi|167867073|gb|EDS30456.1| viral IAP-associated factor [Culex quinquefasciatus]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 153/193 (79%), Gaps = 10/193 (5%)

Query: 39  PNYEEDTQWNDILRAKGIIPQK--EKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDL 96
           PN  EDT+WND+LRAKGI+P K  E E+TEDDI+ ++E T+ E++  G K++  M LD+L
Sbjct: 4   PN--EDTEWNDVLRAKGILPPKPKEAEITEDDIIGMIENTI-EQKANGGKDMSKMGLDEL 60

Query: 97  DELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF 156
           DELED EDE VL+EYRRKRIAE++ +A K++FG +LEI+G  YV EV  AGEGI+VVLH 
Sbjct: 61  DELEDSEDEAVLEEYRRKRIAELQQLARKAKFGSLLEISGQDYVNEVTKAGEGIYVVLHL 120

Query: 157 ----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
               +P CSL+N HLS+LA +FP+TKF+++I+TTCIPNYP++NLPT+FIY+EG+++ Q V
Sbjct: 121 YSRGVPFCSLVNQHLSQLAPRFPSTKFVRAIATTCIPNYPERNLPTIFIYYEGQLRKQFV 180

Query: 213 GPDEF-RTNLSCD 224
           G  E   TNL+CD
Sbjct: 181 GMIELGGTNLTCD 193

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004028|ref|XP_002422946.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505850|gb|EEB10208.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 157/187 (83%), Gaps = 5/187 (2%)

Query: 43  EDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDE 102
           EDT+WNDILR+KGI+P KEKEVTED +++LVE T+KEKQ   EK LG+++LD+LDELEDE
Sbjct: 6   EDTEWNDILRSKGILPPKEKEVTEDQLISLVEDTIKEKQRDNEKSLGELNLDELDELEDE 65

Query: 103 EDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IP 158
           EDE++L EYR KRIAE+KA+AEK+++G V EI    YV EVN AGEG+WVVLH     IP
Sbjct: 66  EDEKILLEYRNKRIAEIKALAEKAKYGEVSEITAQDYVNEVNKAGEGVWVVLHLYKQGIP 125

Query: 159 LCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR 218
           LC+LIN +LS+L+ KFP TKFIKSISTTCIPNYPDKNLPT+FIYFEG+++ Q+VGP E R
Sbjct: 126 LCNLINQYLSKLSRKFPATKFIKSISTTCIPNYPDKNLPTVFIYFEGELKQQLVGPIELR 185

Query: 219 -TNLSCD 224
             NL+CD
Sbjct: 186 GMNLTCD 192

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195022352|ref|XP_001985557.1| GH14439 [Drosophila grimshawi] gi|193899039|gb|EDV97905.1| GH14439 [Drosophila grimshawi]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 147/192 (76%), Gaps = 14/192 (7%)

Query: 39  PNYEEDTQWNDILRAKGII--PQKEKEVTEDDIVNLVEQTVKEK------QGKGEKELGD 90
           PN  EDT+WND+LRAKGII   QKE E+TED I  ++   ++ +      +G+ +K++ D
Sbjct: 4   PN--EDTEWNDVLRAKGIIGPKQKEAEITEDQIQAMMNDVIQRRTDLPPQEGQRDKQIDD 61

Query: 91  MDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGI 150
           M LD+LDELED EDE VL++YR++R+AEM+A AEK+RFG V EI+G  YV EV  AGEGI
Sbjct: 62  MSLDELDELEDSEDEAVLEQYRQRRMAEMRATAEKARFGSVREISGQEYVNEVTKAGEGI 121

Query: 151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK 206
           WVVLH     +PLC+LI++H+ +LAA+FP TKF++S++TTCIPN+PDKNLPT+F+Y EG 
Sbjct: 122 WVVLHLYANGVPLCALIHHHMQQLAARFPQTKFLRSVATTCIPNFPDKNLPTIFVYHEGA 181

Query: 207 MQSQMVGPDEFR 218
           M+ Q +GP E R
Sbjct: 182 MRKQFIGPLELR 193

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195427691|ref|XP_002061910.1| GK17253 [Drosophila willistoni] gi|194157995|gb|EDW72896.1| GK17253 [Drosophila willistoni]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/191 (57%), Positives = 148/191 (77%), Gaps = 13/191 (6%)

Query: 43  EDTQWNDILRAKGII-PQ--KEKEVTEDDIVNLVEQTVKEK------QGKGEKELGDMDL 93
           EDT+WND+LR+KGII P+  KE E+TED I  +++  ++ +      +G+ +K++ DM L
Sbjct: 6   EDTEWNDVLRSKGIIGPKQPKEAEITEDQIQAMLDDAIQRRTDLPAQEGQRDKKIDDMSL 65

Query: 94  DDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVV 153
           D+LDELED EDE VL+EYRR+RIAEM+A AEK+RFG + EI+G  YV EV  AGEGIWVV
Sbjct: 66  DELDELEDSEDEAVLEEYRRRRIAEMRATAEKARFGSIREISGQEYVNEVTKAGEGIWVV 125

Query: 154 LHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQS 209
           LH     +PLC+LI++H+ +LAAKFP TKF++SI+TTCIPN+P+KNLPT+FIY EG ++ 
Sbjct: 126 LHLYANGVPLCALIHHHMQQLAAKFPQTKFLRSIATTCIPNFPEKNLPTIFIYHEGSLRK 185

Query: 210 QMVGPDEFRTN 220
           Q +GP E R +
Sbjct: 186 QFIGPLELRGD 196

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195160295|ref|XP_002021011.1| GL25063 [Drosophila persimilis] gi|194118124|gb|EDW40167.1| GL25063 [Drosophila persimilis]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 148/192 (77%), Gaps = 14/192 (7%)

Query: 39  PNYEEDTQWNDILRAKGII--PQKEKEVTEDDIVNLVEQTVKEK------QGKGEKELGD 90
           PN  EDT+WND+LRAKGII   QKE E+TED I  L+++ ++ +      +G+ +K++ D
Sbjct: 4   PN--EDTEWNDVLRAKGIIGPKQKEAEITEDQIQALMDEAIQRRTNLPHSEGQRDKKIND 61

Query: 91  MDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGI 150
           M LD+LDELED EDE VL++YR+KRIAEM+A +EK+RFG V EI+G  Y+ EV  AGEGI
Sbjct: 62  MSLDELDELEDSEDEAVLEQYRQKRIAEMRATSEKARFGSVREISGQDYISEVTKAGEGI 121

Query: 151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK 206
           WVVLH     +PLC+LI++H+ +LA +FP TKF++S++TTCIPN+P+KNLPT+FIY +G 
Sbjct: 122 WVVLHLYANGVPLCALIHHHMKQLAVRFPHTKFLRSVATTCIPNFPEKNLPTIFIYHQGA 181

Query: 207 MQSQMVGPDEFR 218
           M+ Q +GP E R
Sbjct: 182 MRKQFIGPLELR 193

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125978515|ref|XP_001353290.1| GA15005 [Drosophila pseudoobscura pseudoobscura] gi|54642044|gb|EAL30793.1| GA15005 [Drosophila pseudoobscura pseudoobscura]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 148/192 (77%), Gaps = 14/192 (7%)

Query: 39  PNYEEDTQWNDILRAKGII--PQKEKEVTEDDIVNLVEQTVKEK------QGKGEKELGD 90
           PN  EDT+WND+LRAKGII   QKE E+TED I  L+++ ++ +      +G+ +K++ D
Sbjct: 4   PN--EDTEWNDVLRAKGIIGPKQKEAEITEDQIQALMDEAIQRRTNLPHSEGQRDKKIND 61

Query: 91  MDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGI 150
           M LD+LDELED EDE VL++YR+KRIAEM+A +EK+RFG V EI+G  Y+ EV  AGEGI
Sbjct: 62  MSLDELDELEDSEDEAVLEQYRQKRIAEMRATSEKARFGSVREISGQDYISEVTKAGEGI 121

Query: 151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK 206
           WVVLH     +PLC+LI++H+ +LA +FP TKF++S++TTCIPN+P+KNLPT+FIY +G 
Sbjct: 122 WVVLHLYANGVPLCALIHHHMKQLAVRFPHTKFLRSVATTCIPNFPEKNLPTIFIYHQGA 181

Query: 207 MQSQMVGPDEFR 218
           M+ Q +GP E R
Sbjct: 182 MRKQFIGPLELR 193

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194748395|ref|XP_001956631.1| GF24491 [Drosophila ananassae] gi|190623913|gb|EDV39437.1| GF24491 [Drosophila ananassae]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 150/192 (78%), Gaps = 14/192 (7%)

Query: 39  PNYEEDTQWNDILRAKGII-PQ-KEKEVTEDDIVNLVEQTVKEK------QGKGEKELGD 90
           PN  EDT+WND+LRAKGII P+ KE E+TED I  L++  ++ +      +G+ +K++ D
Sbjct: 4   PN--EDTEWNDVLRAKGIIGPKAKEAEITEDQIQALMDDAIQRRTDLPQNEGQRDKKIDD 61

Query: 91  MDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGI 150
           M LD+LDELED EDE VL++YR++RIAEM+A AEK+RFG V EI+G  YV EV  AGEGI
Sbjct: 62  MSLDELDELEDSEDEAVLEQYRQRRIAEMRATAEKARFGSVREISGQEYVNEVTKAGEGI 121

Query: 151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK 206
           WVV+H     +PLC+LI++H+ +LAA+FP TKF++SI+TTCIPN+P+KNLPT+F+Y EG+
Sbjct: 122 WVVIHLYANGVPLCALIHHHMQQLAARFPQTKFLRSIATTCIPNFPEKNLPTIFVYHEGQ 181

Query: 207 MQSQMVGPDEFR 218
           M+ Q +GP E R
Sbjct: 182 MRKQYIGPLELR 193

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195379106|ref|XP_002048322.1| GJ13906 [Drosophila virilis] gi|194155480|gb|EDW70664.1| GJ13906 [Drosophila virilis]

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 147/194 (75%), Gaps = 14/194 (7%)

Query: 39  PNYEEDTQWNDILRAKGIIP--QKEKEVTEDDIVNLVEQTVKEK------QGKGEKELGD 90
           PN  EDT+WND+LRAKGII   QKE E+TED I  ++   ++ +      +G+ +K + D
Sbjct: 4   PN--EDTEWNDVLRAKGIIGPRQKEAEITEDQIQAMMNDVIQRRTDLPPQEGQRDKRIDD 61

Query: 91  MDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGI 150
           M LD+LDELED EDE VL++YR++RIAEM+A+AEK+RFG V EI+G  YV EV  AGEGI
Sbjct: 62  MSLDELDELEDSEDEAVLEQYRQRRIAEMRAIAEKARFGSVREISGQEYVNEVTKAGEGI 121

Query: 151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK 206
           WVVLH     +PLC+LI++H+ +LA +FP TKF++SI+TTCIPN+P+KNLPT+FIY EG 
Sbjct: 122 WVVLHLYANGVPLCALIHHHMQQLAVRFPQTKFLRSIATTCIPNFPEKNLPTIFIYHEGA 181

Query: 207 MQSQMVGPDEFRTN 220
           M+ Q +GP E R +
Sbjct: 182 MRKQFIGPLELRGD 195

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
FB|FBgn0036237	240	viaf "viral IAP-associated fac	0.491	0.466	0.603	1.1e-46
ZFIN|ZDB-GENE-040322-1	239	pdcl3 "phosducin-like 3" [Dani	0.789	0.753	0.507	2e-45
MGI|MGI:1916083	240	Pdcl3 "phosducin-like 3" [Mus	0.802	0.762	0.497	1.5e-42
UNIPROTKB|F1P5G4	238	PDCL3 "Uncharacterized protein	0.521	0.5	0.596	3.6e-42
RGD|1309663	240	Pdcl3 "phosducin-like 3" [Ratt	0.802	0.762	0.497	4e-42
UNIPROTKB|Q9H2J4	239	PDCL3 "Phosducin-like protein	0.789	0.753	0.492	1.1e-41
UNIPROTKB|F1MTW8	240	PDCL3 "Phosducin-like protein	0.789	0.75	0.474	4.6e-41
UNIPROTKB|F1STF7	240	PDCL3 "Uncharacterized protein	0.807	0.766	0.473	5.9e-41
UNIPROTKB|E2RF39	240	PDCL3 "Uncharacterized protein	0.807	0.766	0.468	1.6e-40
UNIPROTKB|Q0VCW8	240	PDCL3 "Phosducin-like protein	0.789	0.75	0.469	2e-40

FB|FBgn0036237 viaf "viral IAP-associated factor" [Drosophila melanogaster (taxid:7227)]

 Score = 393 (143.4 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 70/116 (60%), Positives = 94/116 (81%)

Query:   107 VLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSL 162
             VL++YR++RIAEM+A AEK+RFG V EI+G  YV EV  AGEGIWVVLH     +PLC+L
Sbjct:    78 VLEQYRQRRIAEMRATAEKARFGSVREISGQDYVNEVTKAGEGIWVVLHLYANGVPLCAL 137

Query:   163 INNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR 218
             I++H+ +LA +FP TKF++S++TTCIPN+P+KNLPT+FIY EG ++ Q +GP E R
Sbjct:   138 IHHHMQQLAVRFPQTKFVRSVATTCIPNFPEKNLPTIFIYHEGALRKQYIGPLELR 193

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS

GO:0043281 "regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISS

ZFIN|ZDB-GENE-040322-1 pdcl3 "phosducin-like 3" [Danio rerio (taxid:7955)]

 Score = 453 (164.5 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 98/193 (50%), Positives = 123/193 (63%)

Query:    39 PNYEEDTQWNDILRAKGIIPQKEKEVTE--DDIVNLVEQTVXXXXXXXXXXXXXXXXXXX 96
             PN   DT+WNDILR KGI+P KE  V E  D+ ++L  Q+V                   
Sbjct:     4 PN--ADTEWNDILRKKGILPPKETPVEEEEDEQLHLQSQSVVKTYEDMTLEELEENEDEF 61

Query:    97 XXXXXXXXXRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF 156
                        ++ YR KR+AE KA   K+ FG + EI+G  YVQEVN AGEGIWVVLH 
Sbjct:    62 SEEDE----HAMEMYRLKRLAEWKANQMKNVFGELKEISGQDYVQEVNKAGEGIWVVLHL 117

Query:   157 ----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
                 IPLCSLIN HL++LA KFP +KF+KSIS+TCIPNYPD+NLPTLF+Y +G+M++Q +
Sbjct:   118 YKQGIPLCSLINQHLAQLARKFPQSKFLKSISSTCIPNYPDRNLPTLFVYRDGEMKAQFI 177

Query:   213 GPDEFR-TNLSCD 224
             GP  F   NL+CD
Sbjct:   178 GPLVFGGMNLTCD 190

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006915 "apoptotic process" evidence=IEA

MGI|MGI:1916083 Pdcl3 "phosducin-like 3" [Mus musculus (taxid:10090)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 96/193 (49%), Positives = 122/193 (63%)

Query:    39 PNYEEDTQWNDILRAKGIIPQKE--KEVTEDDIVNLVEQTVXXXXXXXXXXXXXXXXXXX 96
             PN   DT+WNDILR KGI+P KE  KE+ E++     EQ +                   
Sbjct:     4 PN--ADTEWNDILRKKGILPPKESLKELEEEE-AEKEEQLLQQSVVKTYEDMTLEELEEN 60

Query:    97 XXXXXXXXXRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF 156
                      R ++ YR++R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+LH 
Sbjct:    61 EDEFSEEDERAIEMYRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHL 120

Query:   157 ----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
                 IPLCSLIN+HLS LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q +
Sbjct:   121 YKQGIPLCSLINHHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIKAQFI 180

Query:   213 GPDEFR-TNLSCD 224
             GP  F   NL+ D
Sbjct:   181 GPLVFGGMNLTID 193

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1P5G4 PDCL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 375 (137.1 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 74/124 (59%), Positives = 93/124 (75%)

Query:   106 RVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCS 161
             + ++ YR++R+AEMKA   K++FG VLEI G  YVQEV  AG+GIWVVLH     IPLC+
Sbjct:    68 KAIEMYRQQRLAEMKAAQMKNKFGEVLEILGKDYVQEVTKAGKGIWVVLHLYKQGIPLCA 127

Query:   162 LINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR-TN 220
             LIN HLS LA KF   KFIK+ISTTCIPNYPDKNLPT+F+Y +G +++Q +GP  F   N
Sbjct:   128 LINQHLSGLAKKFRDVKFIKAISTTCIPNYPDKNLPTIFVYLDGDIRAQFIGPLVFGGMN 187

Query:   221 LSCD 224
             L+ D
Sbjct:   188 LTRD 191

GO:0005737 "cytoplasm" evidence=IEA

RGD|1309663 Pdcl3 "phosducin-like 3" [Rattus norvegicus (taxid:10116)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 96/193 (49%), Positives = 122/193 (63%)

Query:    39 PNYEEDTQWNDILRAKGIIPQKE--KEVTEDDIVNLVEQTVXXXXXXXXXXXXXXXXXXX 96
             PN   DT+WNDILR KGI+P KE  KE+ E++     EQ +                   
Sbjct:     4 PN--ADTEWNDILRKKGILPPKESLKELEEEE-EGKEEQRLQQSVVKTYEDMTLEELQEN 60

Query:    97 XXXXXXXXXRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF 156
                      R ++ YR++R+AE KA   +++FG VLEI+G  YVQEV  AGEG+WVVLH 
Sbjct:    61 EDEFSEEDERAIEMYRQQRLAEWKATQLRNKFGEVLEISGKDYVQEVTKAGEGLWVVLHL 120

Query:   157 ----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
                 IPLCSLIN+HLS LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q +
Sbjct:   121 YKQGIPLCSLINHHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIKAQFI 180

Query:   213 GPDEFR-TNLSCD 224
             GP  F   NL+ D
Sbjct:   181 GPLVFGGMNLTID 193

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

UNIPROTKB|Q9H2J4 PDCL3 "Phosducin-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 96/195 (49%), Positives = 124/195 (63%)

Query:    39 PNYEEDTQWNDILRAKGIIPQKE--KEVTED--DIVNLVEQTVXXXXXXXXXXXXXXXXX 94
             PN   DT+WNDILR KGI+P KE  KE+ E+  +   +++Q+V                 
Sbjct:     4 PN--ADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHED 61

Query:    95 XXXXXXXXXXXRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVL 154
                        R ++ YRR+R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+L
Sbjct:    62 EFNEEDE----RAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVIL 117

Query:   155 HF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQ 210
             H     IPLC+LIN HLS LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q
Sbjct:   118 HLYKQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQ 177

Query:   211 MVGPDEFR-TNLSCD 224
              +GP  F   NL+ D
Sbjct:   178 FIGPLVFGGMNLTRD 192

GO:0006915 "apoptotic process" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MTW8 PDCL3 "Phosducin-like protein 3" [Bos taurus (taxid:9913)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 93/196 (47%), Positives = 124/196 (63%)

Query:    39 PNYEEDTQWNDILRAKGIIPQKE--KEV---TEDDIVNLVEQTVXXXXXXXXXXXXXXXX 93
             PN   DT+WNDILR KGI+P KE  K++    E++   +++Q++                
Sbjct:     4 PN--ADTEWNDILRKKGILPSKEDLKDLEKEAEEEEQRILQQSIVKTYEDMTLEELEDNE 61

Query:    94 XXXXXXXXXXXXRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVV 153
                         R ++ YR++R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+
Sbjct:    62 DEFNEEDE----RAIEMYRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVI 117

Query:   154 LHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQS 209
             LH     IPLC+LIN HLS LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++
Sbjct:   118 LHLYKQGIPLCALINQHLSALARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKA 177

Query:   210 QMVGPDEFR-TNLSCD 224
             Q +GP  F   NL+ D
Sbjct:   178 QFIGPLVFGGMNLTLD 193

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1STF7 PDCL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 91/192 (47%), Positives = 116/192 (60%)

Query:    39 PNYEEDTQWNDILRAKGIIPQKEKEVT-EDDIVNLVEQTVXXXXXXXXXXXXXXXXXXXX 97
             PN   DT+WNDILR KGI+P KE     E +     +Q +                    
Sbjct:     4 PN--ADTEWNDILRKKGILPSKESLTELEKEAEEEEQQALQQSIVKTYEDMTLEELEDNE 61

Query:    98 XXXXXXXXRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF- 156
                     R ++ YR++R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+LH  
Sbjct:    62 DEFNEEDERAIEMYRQQRLAEWKATQMKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLY 121

Query:   157 ---IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
                IPLC+LIN H S LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q +G
Sbjct:   122 KQGIPLCALINQHFSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIG 181

Query:   214 PDEFR-TNLSCD 224
             P  F   NL+ D
Sbjct:   182 PLVFGGMNLTMD 193

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2RF39 PDCL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 90/192 (46%), Positives = 117/192 (60%)

Query:    39 PNYEEDTQWNDILRAKGIIPQKEK-EVTEDDIVNLVEQTVXXXXXXXXXXXXXXXXXXXX 97
             PN   DT+WNDILR KGI+P KE  +  E +     ++ +                    
Sbjct:     4 PN--ADTEWNDILRKKGILPSKESLKDLEKEAEEEEQRVLQQSVVKTYEDMTLEELEDNE 61

Query:    98 XXXXXXXXRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF- 156
                     R ++ YR++R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+LH  
Sbjct:    62 DEFNEEDERAIEMYRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLY 121

Query:   157 ---IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
                IPLC+LIN H S LA KFP  KFIK+ISTTCIPNYPD+NLPT+F+Y EG +++Q +G
Sbjct:   122 KQGIPLCALINQHFSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIG 181

Query:   214 PDEFR-TNLSCD 224
             P  F   NL+ D
Sbjct:   182 PLVFGGMNLTID 193

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q0VCW8 PDCL3 "Phosducin-like protein 3" [Bos taurus (taxid:9913)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 92/196 (46%), Positives = 124/196 (63%)

Query:    39 PNYEEDTQWNDILRAKGIIPQKE--KEV---TEDDIVNLVEQTVXXXXXXXXXXXXXXXX 93
             PN   DT+WNDILR KGI+P KE  K++    E++   +++Q++                
Sbjct:     4 PN--ADTEWNDILRKKGILPSKEDLKDLEKEAEEEEQRILQQSIVKTYEDMTLEELEDNE 61

Query:    94 XXXXXXXXXXXXRVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVV 153
                         R ++ YR++R+AE KA   K++FG VLEI+G  YVQEV  AGEG+WV+
Sbjct:    62 DEFNEEDE----RAIEMYRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVI 117

Query:   154 LHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQS 209
             LH     IPLC+LIN HLS LA KFP  KFIK+ISTTCIP+YPD+NLPT+F+Y EG +++
Sbjct:   118 LHLYKQGIPLCALINQHLSALARKFPDVKFIKAISTTCIPSYPDRNLPTVFVYLEGDIKA 177

Query:   210 QMVGPDEFR-TNLSCD 224
             Q +GP  F   NL+ D
Sbjct:   178 QFIGPLVFGGMNLTLD 193

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P268	PDCL3_DANRE	No assigned EC number	0.5376	0.7850	0.7489	yes	N/A
Q0VCW8	PDCL3_BOVIN	No assigned EC number	0.4974	0.7675	0.7291	yes	N/A
Q8BVF2	PDCL3_MOUSE	No assigned EC number	0.5133	0.7938	0.7541	yes	N/A
Q4KLJ8	PDCL3_RAT	No assigned EC number	0.5396	0.7850	0.7458	yes	N/A
Q8MR62	VIAF1_DROME	No assigned EC number	0.5618	0.7894	0.75	yes	N/A
Q9H2J4	PDCL3_HUMAN	No assigned EC number	0.5224	0.7631	0.7280	yes	N/A
Q9Y7L1	YGI9_SCHPO	No assigned EC number	0.4237	0.7412	0.7253	yes	N/A
Q71A38	PHLP2_DICDI	No assigned EC number	0.4104	0.7324	0.6987	yes	N/A
Q5RB77	PDCL3_PONAB	No assigned EC number	0.5359	0.75	0.7154	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	228
cd02988	192	cd02988, Phd_like_VIAF, Phosducin (Phd)-like famil	3e-81
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	2e-34
cd02987	175	cd02987, Phd_like_Phd, Phosducin (Phd)-like family	6e-20
pfam02114	245	pfam02114, Phosducin, Phosducin	6e-09
cd02989	113	cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam	2e-05

>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

 Score =  240 bits (615), Expect = 3e-81
 Identities = 98/186 (52%), Positives = 120/186 (64%), Gaps = 10/186 (5%)

Query: 45  TQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDE-E 103
           T+WNDILR KGI+P K     E++   L        Q   E  L    LD+LDE  DE E
Sbjct: 1   TEWNDILRKKGILPPKPPSPKEEEEEALEL----AIQEAHENALEKKLLDELDEELDEEE 56

Query: 104 DERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPL 159
           D+R L+EYRRKR+AEMKA+AEKS+FG V EI+   YV+EV  A +  WVV+H     IPL
Sbjct: 57  DDRFLEEYRRKRLAEMKALAEKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPL 116

Query: 160 CSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR- 218
           C L+N HLSELA KFP TKF+K IST CIPNYPDKNLPT+ +Y  G +  Q +G  EF  
Sbjct: 117 CRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGG 176

Query: 219 TNLSCD 224
            N + +
Sbjct: 177 MNTTME 182

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 192

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score =  118 bits (299), Expect = 2e-34
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 6/98 (6%)

Query: 126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIK 181
             FG V EI+   +++EV  A +G  VV+HF     P C ++++HL ELAAK+P TKF+K
Sbjct: 1   KGFGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVK 60

Query: 182 SIST-TCIPNYPD-KNLPTLFIYFEGKMQSQMVGPDEF 217
             +    + NY D K LPTL +Y  G++   +VG +E 
Sbjct: 61  INAEKAFLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

 Score = 83.1 bits (206), Expect = 6e-20
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 13/142 (9%)

Query: 83  KGEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSR-FGRVLEI-NGDTYV 140
           K  KE    D DD     DE+ E  LQ+YR +R+ EM A     R FG+V E+ +G+ ++
Sbjct: 20  KQLKESEQEDDDD-----DEDKEEFLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQFL 74

Query: 141 QEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST-TCIPNYPDKN 195
             ++  G+   VV+H     IP C+ +N+ L  LAA++P  KF K  ++ T   +  D +
Sbjct: 75  DAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTD 134

Query: 196 -LPTLFIYFEGKMQSQMVGPDE 216
            LP L +Y  G++    V   E
Sbjct: 135 ALPALLVYKGGELIGNFVRVTE 156

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 175

>gnl|CDD|202114 pfam02114, Phosducin, Phosducin

 Score = 54.3 bits (130), Expect = 6e-09
 Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 15/178 (8%)

Query: 48  NDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKG----EKELGDMDLDDLDELEDE- 102
           ND  + K      +          ++ Q    +        E+    M + + + +  + 
Sbjct: 27  NDWRKFKLESEDSDSVAHS--KKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELIHKDK 84

Query: 103 EDERVLQEYRRKRIAEMKAMAEKS-RFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF---- 156
           EDE  L++YRR+ + +M        R+G V E+ +G+ +++ +    +   +V+H     
Sbjct: 85  EDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDG 144

Query: 157 IPLCSLINNHLSELAAKFPTTKF--IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
           I  C  +N+ L  LAA++P  KF  IK+ +T     +    LPTL +Y  G++ S  +
Sbjct: 145 IKGCDALNSSLICLAAEYPMVKFCKIKASNTGAGDRFSSDVLPTLLVYKGGELLSNFI 202

Length = 245

>gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 19/102 (18%)

Query: 128 FGRVLEINGD----TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKF 179
            G+  E++ +      V+          VV HF       C +++ HL  LA K   TKF
Sbjct: 3   HGKYREVSDEKEFFEIVKSSER------VVCHFYHPEFFRCKIMDKHLEILAKKHLETKF 56

Query: 180 IKSISTTCIP----NYPDKNLPTLFIYFEGKMQSQMVGPDEF 217
           IK ++    P        K LPT+ ++  GK   ++VG +E 
Sbjct: 57  IK-VNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGFEEL 97

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG3170|consensus	240		100.0
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	100.0
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	100.0
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	100.0
KOG1672|consensus	211		99.93
KOG3171|consensus	273		99.89
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.81
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.79
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.61
KOG0907|consensus	106		99.6
KOG0910|consensus	150		99.57
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.54
KOG0908|consensus	288		99.53
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.51
PHA02278	103	thioredoxin-like protein	99.5
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.5
PTZ00051	98	thioredoxin; Provisional	99.47
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.45
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.42
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.42
PTZ00062	204	glutaredoxin; Provisional	99.41
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.4
PRK09381	109	trxA thioredoxin; Provisional	99.38
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.38
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.36
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.35
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.35
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.35
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.33
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.32
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.31
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.27
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.25
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.23
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.22
PRK10996	139	thioredoxin 2; Provisional	99.22
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.21
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.13
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.12
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.1
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.1
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.09
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.08
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.04
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.03
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.03
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.02
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.99
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.99
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	98.98
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.95
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.91
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.89
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.88
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.87
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.85
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.84
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.79
PLN02309	457	5'-adenylylsulfate reductase	98.73
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.68
PTZ00102	477	disulphide isomerase; Provisional	98.66
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.55
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.53
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.53
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.48
PTZ00102	477	disulphide isomerase; Provisional	98.48
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.45
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.42
PHA02125	75	thioredoxin-like protein	98.4
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.39
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.39
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.37
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.33
KOG0190|consensus	493		98.23
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.19
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.18
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.17
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.12
KOG0190|consensus	493		98.06
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	97.98
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.92
KOG0914|consensus	265		97.91
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	97.87
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	97.87
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.78
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	97.77
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.76
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	97.75
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.66
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	97.64
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	97.53
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.51
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	97.5
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.48
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.47
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	97.45
KOG0911|consensus	227		97.41
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.18
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	97.08
KOG0912|consensus	375		97.04
KOG0191|consensus	383		96.96
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	96.95
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	96.88
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	96.86
PRK13728	181	conjugal transfer protein TrbB; Provisional	96.85
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	96.84
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	96.77
KOG0191|consensus	383		96.76
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	96.64
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	96.58
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	96.42
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	96.39
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	96.37
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	96.36
PF13728	215	TraF: F plasmid transfer operon protein	96.36
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	96.3
PRK11200	85	grxA glutaredoxin 1; Provisional	96.26
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	96.12
KOG4277|consensus	468		95.89
smart00594	122	UAS UAS domain.	95.88
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	95.84
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	95.68
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.65
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	95.61
PTZ00056	199	glutathione peroxidase; Provisional	95.4
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	95.3
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.29
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	95.25
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	95.21
KOG3425|consensus	128		95.1
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.08
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	94.92
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	94.85
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	94.81
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	94.71
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	94.66
KOG2603|consensus	331		94.58
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	94.55
PLN02412	167	probable glutathione peroxidase	94.52
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	94.51
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	94.45
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	94.39
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	94.2
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	94.02
KOG3414|consensus	142		93.84
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	93.56
PRK15000	200	peroxidase; Provisional	93.45
PTZ00256	183	glutathione peroxidase; Provisional	93.3
KOG2501|consensus	157		93.04
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	93.02
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	93.0
PHA03050	108	glutaredoxin; Provisional	92.99
COG2143	182	Thioredoxin-related protein [Posttranslational mod	92.98
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	92.83
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	92.41
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	92.21
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	92.07
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	92.06
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	91.76
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	90.92
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	89.95
PRK10329	81	glutaredoxin-like protein; Provisional	89.54
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	89.52
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	89.31
PRK13189	222	peroxiredoxin; Provisional	88.33
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	87.14
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	87.09
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	86.64
KOG1731|consensus	606		86.59
PRK13190	202	putative peroxiredoxin; Provisional	86.51
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	86.09
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	84.77
PTZ00137	261	2-Cys peroxiredoxin; Provisional	84.36
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	84.33
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	84.29
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	83.95
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	82.81
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	82.64
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	82.54
PF10587	28	EF-1_beta_acid: Eukaryotic elongation factor 1 bet	80.97
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	80.84
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	80.67

>KOG3170|consensus

Probab=100.00  E-value=8.5e-60  Score=401.45  Aligned_cols=186  Identities=49%  Similarity=0.893  Sum_probs=174.0

Q ss_pred             CCCCCCCccchHHHHHcCCCCCCCCCCChhHHHHHHHHHHHHhhhhchhhccCCChhHHhhccCh---hcHHHHHHHHHH
Q psy14385         38 KPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDE---EDERVLQEYRRK  114 (228)
Q Consensus        38 ~~~~~edTewnDilrk~Gi~p~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ldeL~elede---eDd~~Le~yR~k  114 (228)
                      ++||++||||||||||+||||+|++.++ +.+.+++++++.+   ++++++++++|+||++|||+   +||+|||+||++
T Consensus         1 ~~d~~~dtewnDIlRkkGiLPekep~~~-~~~~ea~~~~~~~---~~~~~~edk~leeLeelEDded~dDerfLE~YR~k   76 (240)
T KOG3170|consen    1 MDDESEDTEWNDILRKKGILPEKEPSPD-AKLEEALEEAIAK---SHENRLEDKDLEELEELEDDEDSDDERFLEMYRIK   76 (240)
T ss_pred             CCCcccccchHHHHHhcCCCCCCCCCcc-hhhhHHHHHHHHH---HHHhhhhcccHHHHHHhhhcccccHHHHHHHHHHH
Confidence            4699999999999999999999998877 5566666666654   79999999999999999876   456699999999


Q ss_pred             HHHHHHHHHhccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCC
Q psy14385        115 RIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPN  190 (228)
Q Consensus       115 Rl~ELk~~~~~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~  190 (228)
                      ||+||+..+.+++||+|++||+.+|+++||++|.+.|||||+    .+.|++++.||..||.+||.+|||||.++.|++|
T Consensus        77 Rl~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpN  156 (240)
T KOG3170|consen   77 RLAEWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPN  156 (240)
T ss_pred             HHHHHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCC
Confidence            999999999999999999999999999999999999999999    9999999999999999999999999999999999


Q ss_pred             CCCCCCcEEEEEECCEEEeEEeCccccC-CCCCccccC
Q psy14385        191 YPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDANV  227 (228)
Q Consensus       191 y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~~  227 (228)
                      ||.+|||||+||..|.+.+|+||+..|| |++|++++.
T Consensus       157 YPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e  194 (240)
T KOG3170|consen  157 YPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVE  194 (240)
T ss_pred             CcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHH
Confidence            9999999999999999999999999999 999999863

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=100.00  E-value=3.5e-54  Score=367.86  Aligned_cols=178  Identities=54%  Similarity=0.891  Sum_probs=161.6

Q ss_pred             ccchHHHHHcCCCCCCCCCCChhHHHHHHHHHHHHhhhhchhhccCCChhHHhhccChhcH-HHHHHHHHHHHHHHHHHH
Q psy14385         45 TQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDE-RVLQEYRRKRIAEMKAMA  123 (228)
Q Consensus        45 TewnDilrk~Gi~p~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ldeL~eledeeDd-~~Le~yR~kRl~ELk~~~  123 (228)
                      |||||||||||||||||++++++...... .+..   .++.++++++++|||++++|++|| +||++||++||+||++.+
T Consensus         1 tew~di~r~~g~~p~~~~~~~~~~~~~~~-~~~~---~~~~~~~e~~~~~el~~~~d~~~d~~~Le~yR~kRl~el~~~~   76 (192)
T cd02988           1 TEWNDILRKKGILPPKPPSPKEEEEEALE-LAIQ---EAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALA   76 (192)
T ss_pred             CchhHHHHHcCCCCCCCCCCchhhHHHHH-HHHH---HHHHhHhhhccHHHHHHhhcccccHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999988876554333 3332   257899999999999988766544 499999999999999998


Q ss_pred             hccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEE
Q psy14385        124 EKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTL  199 (228)
Q Consensus       124 ~~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTl  199 (228)
                      ++++||.|++|+.++|..+|++++++.+|||||    |++|++|+++|++||++|+.++|++|+++.|+++|+++++|||
T Consensus        77 ~~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~lPTl  156 (192)
T cd02988          77 EKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDKNLPTI  156 (192)
T ss_pred             hhCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCCCCEE
Confidence            899999999999999999999887677999999    9999999999999999999999999999999999999999999


Q ss_pred             EEEECCEEEeEEeCccccC-CCCCcccc
Q psy14385        200 FIYFEGKMQSQMVGPDEFR-TNLSCDAN  226 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~~G-~~~t~e~~  226 (228)
                      ++|+||+++++++|+..+| ++||++++
T Consensus       157 liyk~G~~v~~ivG~~~~gg~~~~~~~l  184 (192)
T cd02988         157 LVYRNGDIVKQFIGLLEFGGMNTTMEDL  184 (192)
T ss_pred             EEEECCEEEEEEeCchhhCCCCCCHHHH
Confidence            9999999999999999999 99998875

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=100.00  E-value=2.8e-34  Score=256.27  Aligned_cols=142  Identities=39%  Similarity=0.745  Sum_probs=110.9

Q ss_pred             hhhccCCChhHHhhcc-ChhcHHHHHHHHHHHHHHHHHHHh-ccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe----c
Q psy14385         85 EKELGDMDLDDLDELE-DEEDERVLQEYRRKRIAEMKAMAE-KSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----I  157 (228)
Q Consensus        85 ~~~~e~~~ldeL~ele-deeDd~~Le~yR~kRl~ELk~~~~-~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf----~  157 (228)
                      .+..++++++|+++++ |++||+||++||++||+||++... .++||.|++| +.++|++.|++.++++||||||    +
T Consensus        79 e~~~~~~~~~e~e~~~~d~eDeefL~~yR~qRm~El~~~~~~~~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~  158 (265)
T PF02114_consen   79 EKLSEKMSLDELEELEDDEEDEEFLEQYREQRMQELKQKLQKGPRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGF  158 (265)
T ss_dssp             S----SS-HHHHHHHCC----HHHHHHHHHHHHHHHHHHH-------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTS
T ss_pred             hhhcccccHhHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhCCcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCC
Confidence            4455678999999886 567889999999999999997644 5889999999 5689999999888889999999    9


Q ss_pred             cchHHHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCccccC-CCCCcccc
Q psy14385        158 PLCSLINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDAN  226 (228)
Q Consensus       158 ~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~  226 (228)
                      +.|.+|+.+|..||++||.||||+|.++.  |+++|++++|||||+||+|+++++|||+..+| ++|+++++
T Consensus       159 ~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dl  230 (265)
T PF02114_consen  159 PRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDL  230 (265)
T ss_dssp             CCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHH
T ss_pred             chHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHH
Confidence            99999999999999999999999999987  47999999999999999999999999999887 88988764

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=100.00  E-value=1.1e-32  Score=231.95  Aligned_cols=137  Identities=28%  Similarity=0.521  Sum_probs=121.0

Q ss_pred             CCChhHHhhccChhcHHHHHHHHHHHHHHHHHHH-hccCCCceEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHH
Q psy14385         90 DMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMA-EKSRFGRVLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLI  163 (228)
Q Consensus        90 ~~~ldeL~eledeeDd~~Le~yR~kRl~ELk~~~-~~~~fG~V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l  163 (228)
                      +.+.++|++++| ++|++|++||++||+||++.. .+.+||.|++|+. ++|...|++++++++|||||    |++|+.|
T Consensus        23 ~~~~~~~d~~~~-~~e~~l~~~R~~R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m  101 (175)
T cd02987          23 KESEQEDDDDDE-DKEEFLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAAL  101 (175)
T ss_pred             hchhhhhhhhhh-hHHHHHHHHHHHHHHHHHHhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHH
Confidence            445556665543 347899999999999999965 5788999999987 99999998877667999999    9999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCccccC-CCCCccccC
Q psy14385        164 NNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDANV  227 (228)
Q Consensus       164 ~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~~  227 (228)
                      +++|+.||++||.++|++||++.  ++.+|+++++|||++|++|+.+++++|+.++| .+|++++.+
T Consensus       102 ~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le  168 (175)
T cd02987         102 NSSLLCLAAEYPAVKFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLE  168 (175)
T ss_pred             HHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHH
Confidence            99999999999999999999996  57999999999999999999999999999988 999887653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG1672|consensus

Probab=99.93  E-value=9.6e-26  Score=191.88  Aligned_cols=119  Identities=28%  Similarity=0.448  Sum_probs=106.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhc------cCCCceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHH
Q psy14385        104 DERVLQEYRRKRIAEMKAMAEK------SRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAA  172 (228)
Q Consensus       104 Dd~~Le~yR~kRl~ELk~~~~~------~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~  172 (228)
                      |++.++..|++||++|++.+.+      .+||.+.+| +..+|+..++++   .-|||||    +.+|++|+.||+.||+
T Consensus        35 d~~dle~lr~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~kS---~kVVcHFY~~~f~RCKimDkhLe~LAk  111 (211)
T KOG1672|consen   35 DEDDLEVLREQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEVKKS---EKVVCHFYRPEFFRCKIMDKHLEILAK  111 (211)
T ss_pred             CchhHHHhHHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhhcC---ceEEEEEEcCCCcceehHHHHHHHHHH
Confidence            3444677799999999987653      689999999 588999999866   3699999    8999999999999999


Q ss_pred             hCCCcEEEEEeCCCCC---CCCCCCCCcEEEEEECCEEEeEEeCccccC--CCCCccc
Q psy14385        173 KFPTTKFIKSISTTCI---PNYPDKNLPTLFIYFEGKMQSQMVGPDEFR--TNLSCDA  225 (228)
Q Consensus       173 kyp~~KFvkI~ad~~~---~~y~v~~LPTllvYk~G~~v~~lvG~~~~G--~~~t~e~  225 (228)
                      +|..|+|+||||+.|+   .++.++.|||+++|+||..++++|||..+|  +.||++.
T Consensus       112 ~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~  169 (211)
T KOG1672|consen  112 RHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTET  169 (211)
T ss_pred             hcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHH
Confidence            9999999999999985   899999999999999999999999999999  8888764

>KOG3171|consensus

Probab=99.89  E-value=5.9e-23  Score=177.54  Aligned_cols=139  Identities=29%  Similarity=0.536  Sum_probs=121.3

Q ss_pred             hhchhhccCCChhHHhhc-cChhcHHHHHHHHHHHHHHHHHHHh-ccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe--
Q psy14385         82 GKGEKELGDMDLDDLDEL-EDEEDERVLQEYRRKRIAEMKAMAE-KSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF--  156 (228)
Q Consensus        82 ~~~~~~~e~~~ldeL~el-edeeDd~~Le~yR~kRl~ELk~~~~-~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf--  156 (228)
                      +..++.-.+|+++|.... ++.+|+.+|++||+|||++|++..+ .++||.|+++ ++.+|+..|.+.-+...++||.  
T Consensus        89 d~kEkvsrkms~~E~~~m~~~~~de~~L~~yr~qrm~eMrq~l~~gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYE  168 (273)
T KOG3171|consen   89 DSKEKVSRKMSIQEYELMHKEKEDENCLRKYRRQRMQEMRQKLSFGPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYE  168 (273)
T ss_pred             hhHHHhhccccHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHhhcCCccceEEEeccchhHHHHHhcccceEEEEEEEec
Confidence            355666778899888766 3557899999999999999998765 6999999999 7899999999875567788898  


Q ss_pred             --ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCcc-ccCCC
Q psy14385        157 --IPLCSLINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPD-EFRTN  220 (228)
Q Consensus       157 --~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~-~~G~~  220 (228)
                        ++.|..|+.+|.-||+.||.+|||||-++.  +..+|.-.+||||++|++|+++++||... .||.+
T Consensus       169 dgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlged  237 (273)
T KOG3171|consen  169 DGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGED  237 (273)
T ss_pred             CCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence              999999999999999999999999999886  57899999999999999999999999875 55633

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.81  E-value=9.2e-20  Score=141.81  Aligned_cols=100  Identities=37%  Similarity=0.697  Sum_probs=90.4

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEE
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTL  199 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTl  199 (228)
                      .+||.|.+|+.++|.+.|.+++.+.+|||+|    |++|+.|.+.|++||.+|++++|++||+++  .+.+|++.++||+
T Consensus         1 ~~~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~Pt~   80 (113)
T cd02957           1 KGFGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIKVLPTL   80 (113)
T ss_pred             CCCceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCcCCEE
Confidence            3799999999999999998765456899999    999999999999999999999999999996  4688999999999


Q ss_pred             EEEECCEEEeEEeCccccC-CCCCccc
Q psy14385        200 FIYFEGKMQSQMVGPDEFR-TNLSCDA  225 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~~G-~~~t~e~  225 (228)
                      ++|++|+.+++++|...++ .+++.+.
T Consensus        81 ~~f~~G~~v~~~~G~~~~~~~~~~~~~  107 (113)
T cd02957          81 LVYKNGELIDNIVGFEELGGDDFTTED  107 (113)
T ss_pred             EEEECCEEEEEEecHHHhCCCCCCHHH
Confidence            9999999999999999887 7777654

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.79  E-value=4.8e-19  Score=138.83  Aligned_cols=98  Identities=29%  Similarity=0.471  Sum_probs=87.8

Q ss_pred             cCCCceEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        126 SRFGRVLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       126 ~~fG~V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      .+||++.+|+. ++|.+.+.+.   .+|||+|    |++|+.|.+.|++||++||+++|++||+++.   +.+|++.++|
T Consensus         1 ~~~g~v~~i~~~~~~~~~i~~~---~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vP   77 (113)
T cd02989           1 KGHGKYREVSDEKEFFEIVKSS---ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLP   77 (113)
T ss_pred             CCCCCeEEeCCHHHHHHHHhCC---CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCC
Confidence            36999999966 8998888644   4788888    9999999999999999999999999999985   5889999999


Q ss_pred             EEEEEECCEEEeEEeCccccC--CCCCcccc
Q psy14385        198 TLFIYFEGKMQSQMVGPDEFR--TNLSCDAN  226 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~~~G--~~~t~e~~  226 (228)
                      |+++|++|+.+++++|+.++|  .+++.+..
T Consensus        78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~  108 (113)
T cd02989          78 TVILFKNGKTVDRIVGFEELGGKDDFSTETL  108 (113)
T ss_pred             EEEEEECCEEEEEEECccccCCCCCCCHHHH
Confidence            999999999999999999997  77776654

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.61  E-value=3.8e-15  Score=118.10  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=70.9

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEEEECCE
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFIYFEGK  206 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~  206 (228)
                      +.++|...+..++ +.+|||+|    |++|+.|.|.|++||.+|++ ++|++||+++.   +..|++.++||+++||+|+
T Consensus         1 ~~~~~~~~i~~~~-~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954           1 SGWAVDQAILSEE-EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             CHHHHHHHHhccC-CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            3577888887433 46899999    99999999999999999997 69999999986   5899999999999999999


Q ss_pred             EEeEEeCcc
Q psy14385        207 MQSQMVGPD  215 (228)
Q Consensus       207 ~v~~lvG~~  215 (228)
                      .+++++|..
T Consensus        80 ~v~~~~G~~   88 (114)
T cd02954          80 HMKIDLGTG   88 (114)
T ss_pred             EEEEEcCCC
Confidence            999999965

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0907|consensus

Probab=99.60  E-value=5.6e-15  Score=115.54  Aligned_cols=83  Identities=25%  Similarity=0.437  Sum_probs=70.7

Q ss_pred             EeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385        133 EINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       133 eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G  205 (228)
                      ..+..++.....+++ +..|||+|    |+||+.|.|.+..||.+||++.|+++|++++   +..|+++.+|||++||+|
T Consensus         6 ~~~~~~~~~~~~~~~-~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g   84 (106)
T KOG0907|consen    6 TVSDLDLVLSAAEAG-DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG   84 (106)
T ss_pred             ehhhHHHHHHHhhCC-CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence            334444554454443 47999999    9999999999999999999999999999984   478999999999999999


Q ss_pred             EEEeEEeCccc
Q psy14385        206 KMQSQMVGPDE  216 (228)
Q Consensus       206 ~~v~~lvG~~~  216 (228)
                      +.+++++|...
T Consensus        85 ~~~~~~vGa~~   95 (106)
T KOG0907|consen   85 EEVDEVVGANK   95 (106)
T ss_pred             EEEEEEecCCH
Confidence            99999999864

>KOG0910|consensus

Probab=99.57  E-value=6.9e-15  Score=121.30  Aligned_cols=85  Identities=19%  Similarity=0.334  Sum_probs=76.5

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      +.-.+..+|...|.+++  ++|+|.|    |+||+.|.|.|++++.+|. .++|++||.++.   +..|.|+.+||+++|
T Consensus        45 ~~~~s~~~~~~~Vi~S~--~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf  122 (150)
T KOG0910|consen   45 FNVQSDSEFDDKVINSD--VPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF  122 (150)
T ss_pred             ccccCHHHHHHHHHccC--CCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence            33448899999999875  7999999    9999999999999999985 599999999984   689999999999999


Q ss_pred             ECCEEEeEEeCcccc
Q psy14385        203 FEGKMQSQMVGPDEF  217 (228)
Q Consensus       203 k~G~~v~~lvG~~~~  217 (228)
                      +||+.+++++|..+-
T Consensus       123 knGe~~d~~vG~~~~  137 (150)
T KOG0910|consen  123 KNGEKVDRFVGAVPK  137 (150)
T ss_pred             ECCEEeeeecccCCH
Confidence            999999999998753

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.54  E-value=3.6e-14  Score=108.74  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CCCCCCCCCcEEEEEEC
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IPNYPDKNLPTLFIYFE  204 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~~y~v~~LPTllvYk~  204 (228)
                      |.++|.+.|.++ ++.+|||+|    |++|+.|.|.|..||++|+.+.|++||+++.      +..|++.++||+++|++
T Consensus         2 ~~~~~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985           2 SVEELDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             CHHHHHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            457888888765 357999999    9999999999999999999999999998863      36899999999999999


Q ss_pred             CEEEeEEeCccc
Q psy14385        205 GKMQSQMVGPDE  216 (228)
Q Consensus       205 G~~v~~lvG~~~  216 (228)
                      |+.+.++.|...
T Consensus        81 G~~v~~~~G~~~   92 (103)
T cd02985          81 GEKIHEEEGIGP   92 (103)
T ss_pred             CeEEEEEeCCCH
Confidence            999999999764

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0908|consensus

Probab=99.53  E-value=2.1e-14  Score=127.05  Aligned_cols=88  Identities=27%  Similarity=0.479  Sum_probs=81.5

Q ss_pred             ceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|+.| +.++|..++..++ ++.|||.|    |+||+.+.|+|+.||.|||..-|+|+|+++|   +..+++..+||+++
T Consensus         2 ~Vi~v~~d~df~~~ls~ag-~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif   80 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSAAG-GKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF   80 (288)
T ss_pred             CeEEecCcHHHHHhhhccC-ceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence            37788 6799999998775 57999999    9999999999999999999999999999998   58899999999999


Q ss_pred             EECCEEEeEEeCccccC
Q psy14385        202 YFEGKMQSQMVGPDEFR  218 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~~G  218 (228)
                      |+||..++++-|.+.-|
T Consensus        81 f~ng~kid~~qGAd~~g   97 (288)
T KOG0908|consen   81 FRNGVKIDQIQGADASG   97 (288)
T ss_pred             EecCeEeeeecCCCHHH
Confidence            99999999999998766

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.51  E-value=7.5e-14  Score=111.43  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=75.8

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccc--hH--HHHHHHHHHHHhC--C-CcEEEEEeCCCC---CCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPL--CS--LINNHLSELAAKF--P-TTKFIKSISTTC---IPNYPD  193 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~--C~--~l~~~L~~LA~ky--p-~~KFvkI~ad~~---~~~y~v  193 (228)
                      +-.|..++.++|.+.|.+++  .+||++|    |++  |+  +|.|+|.++|+++  . +++|++||+++.   +.+|++
T Consensus         8 ~~~v~~lt~~nF~~~v~~~~--~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I   85 (120)
T cd03065           8 KDRVIDLNEKNYKQVLKKYD--VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL   85 (120)
T ss_pred             CcceeeCChhhHHHHHHhCC--ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence            34688899999999998775  6888888    776  99  9999999999998  4 599999999984   589999


Q ss_pred             CCCcEEEEEECCEEEeEEeCccc
Q psy14385        194 KNLPTLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       194 ~~LPTllvYk~G~~v~~lvG~~~  216 (228)
                      +++|||++|+||+.+. ++|...
T Consensus        86 ~~iPTl~lfk~G~~v~-~~G~~~  107 (120)
T cd03065          86 DEEDSIYVFKDDEVIE-YDGEFA  107 (120)
T ss_pred             ccccEEEEEECCEEEE-eeCCCC
Confidence            9999999999999998 999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PHA02278 thioredoxin-like protein

Probab=99.50  E-value=8.1e-14  Score=108.11  Aligned_cols=78  Identities=8%  Similarity=0.086  Sum_probs=66.7

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEeCCC-------CCCCCCCCCCcEEEEE
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSISTT-------CIPNYPDKNLPTLFIY  202 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~-------~~~~y~v~~LPTllvY  202 (228)
                      +.++|.+.+.+   +.+|||+|    |++|+.|.|.|+++|.++ ..+.|++||++.       .+.+|.++++||+++|
T Consensus         3 ~~~~~~~~i~~---~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f   79 (103)
T PHA02278          3 SLVDLNTAIRQ---KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY   79 (103)
T ss_pred             CHHHHHHHHhC---CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence            45678888843   35889999    999999999999999985 457899999885       2478999999999999


Q ss_pred             ECCEEEeEEeCcc
Q psy14385        203 FEGKMQSQMVGPD  215 (228)
Q Consensus       203 k~G~~v~~lvG~~  215 (228)
                      +||+.+++++|..
T Consensus        80 k~G~~v~~~~G~~   92 (103)
T PHA02278         80 KDGQLVKKYEDQV   92 (103)
T ss_pred             ECCEEEEEEeCCC
Confidence            9999999999965

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.50  E-value=9.6e-14  Score=109.61  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=72.1

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +-+++..+|.+.+ +++  ..+||.|      ||+|+.|.|+|.++|++|++ ++|+++|+++.   +..|+++++|||+
T Consensus        12 ~~~~~~~~~~~~~-~~~--~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          12 WPRVDAATLDDWL-AAG--GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             CcccccccHHHHH-hCC--CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            3467888888555 443  5788888      99999999999999999987 78999999984   6899999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+++++|...
T Consensus        89 ~fkdGk~v~~~~G~~~  104 (111)
T cd02965          89 FFRDGRYVGVLAGIRD  104 (111)
T ss_pred             EEECCEEEEEEeCccC
Confidence            9999999999999764

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PTZ00051 thioredoxin; Provisional

Probab=99.47  E-value=4.3e-13  Score=100.21  Aligned_cols=84  Identities=14%  Similarity=0.273  Sum_probs=70.6

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYF  203 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk  203 (228)
                      |.+|+..+.+..+.+.+  .+|+|+|    |++|+.+.+.|..++++|++++|+.+|.++.   ...|++.++||+++|+
T Consensus         2 v~~i~~~~~~~~~~~~~--~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   79 (98)
T PTZ00051          2 VHIVTSQAEFESTLSQN--ELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK   79 (98)
T ss_pred             eEEecCHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence            56775444444444443  5888888    9999999999999999999999999999974   5889999999999999


Q ss_pred             CCEEEeEEeCccc
Q psy14385        204 EGKMQSQMVGPDE  216 (228)
Q Consensus       204 ~G~~v~~lvG~~~  216 (228)
                      +|+.++++.|...
T Consensus        80 ~g~~~~~~~G~~~   92 (98)
T PTZ00051         80 NGSVVDTLLGAND   92 (98)
T ss_pred             CCeEEEEEeCCCH
Confidence            9999999999753

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.45  E-value=8e-13  Score=98.36  Aligned_cols=81  Identities=21%  Similarity=0.453  Sum_probs=71.8

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHh-CCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCE
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAK-FPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGK  206 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~k-yp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~  206 (228)
                      |.++|.+.+.++. +.+|+|+|    |++|+.|.+.|++++.+ ++.++|+++|++..   ..+|++.++||+++|++|+
T Consensus         1 s~~~~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~   79 (97)
T cd02984           1 SEEEFEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT   79 (97)
T ss_pred             CHHHHHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence            4578888888774 56888888    99999999999999999 78899999999875   4889999999999999999


Q ss_pred             EEeEEeCccc
Q psy14385        207 MQSQMVGPDE  216 (228)
Q Consensus       207 ~v~~lvG~~~  216 (228)
                      .+.++.|...
T Consensus        80 ~~~~~~g~~~   89 (97)
T cd02984          80 IVDRVSGADP   89 (97)
T ss_pred             EEEEEeCCCH
Confidence            9999999753

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.42  E-value=1.7e-12  Score=96.50  Aligned_cols=83  Identities=25%  Similarity=0.440  Sum_probs=74.9

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |..++.++|.+.+.+.  +.+|||.|    |++|+.+.+.|.++|++|+ .+.|++||.++.   ...|.+.++||+++|
T Consensus         1 v~~lt~~~f~~~i~~~--~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    1 VIVLTDENFEKFINES--DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             SEEESTTTHHHHHTTT--SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred             CEECCHHHHHHHHHcc--CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEE
Confidence            4678999999999863  35788888    9999999999999999998 899999999974   589999999999999


Q ss_pred             ECCEEEeEEeCcc
Q psy14385        203 FEGKMQSQMVGPD  215 (228)
Q Consensus       203 k~G~~v~~lvG~~  215 (228)
                      ++|+.+.++.|..
T Consensus        79 ~~g~~~~~~~g~~   91 (103)
T PF00085_consen   79 KNGKEVKRYNGPR   91 (103)
T ss_dssp             ETTEEEEEEESSS
T ss_pred             ECCcEEEEEECCC
Confidence            9999999999974

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.42  E-value=8.8e-13  Score=104.59  Aligned_cols=74  Identities=14%  Similarity=0.252  Sum_probs=66.5

Q ss_pred             hhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEEEECCEE
Q psy14385        136 GDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFIYFEGKM  207 (228)
Q Consensus       136 ~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~  207 (228)
                      .++|.+.+.++ .+++|||+|    |++|+.|+|.|++||.+|++ +.|+++|+++.   +..|.++.+||+++|++|+-
T Consensus         2 ~~~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh   80 (114)
T cd02986           2 KKEVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH   80 (114)
T ss_pred             HHHHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence            56788888877 358999999    99999999999999999998 99999999986   48999999999999999987


Q ss_pred             EeE
Q psy14385        208 QSQ  210 (228)
Q Consensus       208 v~~  210 (228)
                      +.-
T Consensus        81 ~~~   83 (114)
T cd02986          81 MKV   83 (114)
T ss_pred             EEE
Confidence            653

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PTZ00062 glutaredoxin; Provisional

Probab=99.41  E-value=1.1e-12  Score=113.60  Aligned_cols=76  Identities=13%  Similarity=0.174  Sum_probs=67.1

Q ss_pred             eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCEEEe
Q psy14385        134 INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       134 Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      ++.++|.+.+.+. . ..+|++|    |++|+.|+++|.+||.+||+++|++|+++     |+|.++||+++|++|+.++
T Consensus         4 ~~~ee~~~~i~~~-~-g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~   76 (204)
T PTZ00062          4 IKKEEKDKLIESN-T-GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANNEYGVFEFYQNSQLIN   76 (204)
T ss_pred             CCHHHHHHHHhcC-C-CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCcccceEEEEEECCEEEe
Confidence            4667888777532 1 3578888    99999999999999999999999999998     9999999999999999999


Q ss_pred             EEeCccc
Q psy14385        210 QMVGPDE  216 (228)
Q Consensus       210 ~lvG~~~  216 (228)
                      +++|...
T Consensus        77 r~~G~~~   83 (204)
T PTZ00062         77 SLEGCNT   83 (204)
T ss_pred             eeeCCCH
Confidence            9999763

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.40  E-value=1.3e-12  Score=107.26  Aligned_cols=82  Identities=16%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             EEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEE-E
Q psy14385        132 LEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLF-I  201 (228)
Q Consensus       132 ~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTll-v  201 (228)
                      .+| |..+|.+.+..++ +.+|||.|    |++|+.|.|+|+++|++|++ +.|++||+++.   +..|.+++.||++ +
T Consensus         6 ~~l~s~~e~d~~I~~~~-~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f   84 (142)
T PLN00410          6 PHLHSGWAVDQAILAEE-ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF   84 (142)
T ss_pred             hhhCCHHHHHHHHHhcC-CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence            455 6789999887553 57899999    99999999999999999987 88899999985   5899999775555 9


Q ss_pred             EECCE-EEeEEeCc
Q psy14385        202 YFEGK-MQSQMVGP  214 (228)
Q Consensus       202 Yk~G~-~v~~lvG~  214 (228)
                      ||+|+ .+++.+|.
T Consensus        85 fk~g~~~vd~~tG~   98 (142)
T PLN00410         85 FRNKHIMIDLGTGN   98 (142)
T ss_pred             EECCeEEEEEeccc
Confidence            99999 99999994

>PRK09381 trxA thioredoxin; Provisional

Probab=99.38  E-value=4e-12  Score=97.16  Aligned_cols=85  Identities=21%  Similarity=0.425  Sum_probs=74.5

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|.+++.++|.+++.+.+  .+|||+|    |++|+.+.+.|++||++|+ .++|+++|.+..   ...|+++++||+++
T Consensus         4 ~v~~~~~~~~~~~v~~~~--~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   81 (109)
T PRK09381          4 KIIHLTDDSFDTDVLKAD--GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   81 (109)
T ss_pred             cceeeChhhHHHHHhcCC--CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence            478899999999887653  5788888    9999999999999999995 589999999875   36799999999999


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                      |++|+.+.++.|...
T Consensus        82 ~~~G~~~~~~~G~~~   96 (109)
T PRK09381         82 FKNGEVAATKVGALS   96 (109)
T ss_pred             EeCCeEEEEecCCCC
Confidence            999999999999754

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.38  E-value=2.9e-12  Score=101.00  Aligned_cols=88  Identities=10%  Similarity=0.106  Sum_probs=73.1

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---C-CCCCCCCCcEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---I-PNYPDKNLPTL  199 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~-~~y~v~~LPTl  199 (228)
                      +.|.++++++|.+.+.-...+.+|+|.|    |++|+.|.+.|+++|++|.+ ++|++||++..   + ..|.+.++|||
T Consensus         9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl   88 (113)
T cd03006           9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI   88 (113)
T ss_pred             CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence            4689999999998642111235788888    99999999999999999965 89999999863   3 58999999999


Q ss_pred             EEEECCEEEeEEeCccc
Q psy14385        200 FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~  216 (228)
                      ++|++|.....+.|...
T Consensus        89 ~lf~~g~~~~~y~G~~~  105 (113)
T cd03006          89 HLYYRSRGPIEYKGPMR  105 (113)
T ss_pred             EEEECCccceEEeCCCC
Confidence            99999998888888653

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.36  E-value=5.9e-12  Score=104.27  Aligned_cols=87  Identities=18%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCC---
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKN---  195 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~---  195 (228)
                      .+.+.+++.++|.+.+... ++.+|||+|    |++|+.|.+.|+++|.+|.  +++|++||+++.   +..|.+..   
T Consensus        27 ~~~v~~l~~~~f~~~l~~~-~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~  105 (152)
T cd02962          27 PEHIKYFTPKTLEEELERD-KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPL  105 (152)
T ss_pred             CCccEEcCHHHHHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCC
Confidence            4578899999998877654 345788888    9999999999999999986  499999999874   46677776   


Q ss_pred             ---CcEEEEEECCEEEeEEeCcc
Q psy14385        196 ---LPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       196 ---LPTllvYk~G~~v~~lvG~~  215 (228)
                         +||+++|++|+.+.++.|+.
T Consensus       106 v~~~PT~ilf~~Gk~v~r~~G~~  128 (152)
T cd02962         106 SKQLPTIILFQGGKEVARRPYYN  128 (152)
T ss_pred             cCCCCEEEEEECCEEEEEEeccc
Confidence               99999999999999999965

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.35  E-value=3.9e-12  Score=96.28  Aligned_cols=84  Identities=14%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|.+++.++|.+.|.+.+  .+|+|+|    |++|+.|.+.++++|.+|. .+.|+++|++..   ...|+++++||+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~--~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLTPEDFPELVLNRK--EPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcCHHHHHHHHhcCC--CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            467889999999887653  4788888    9999999999999999985 589999999974   47899999999999


Q ss_pred             EECC-EEEeEEeCcc
Q psy14385        202 YFEG-KMQSQMVGPD  215 (228)
Q Consensus       202 Yk~G-~~v~~lvG~~  215 (228)
                      |++| +.+..+.|..
T Consensus        80 ~~~g~~~~~~~~G~~   94 (104)
T cd03004          80 YPGNASKYHSYNGWH   94 (104)
T ss_pred             EcCCCCCceEccCCC
Confidence            9999 8888888864

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.35  E-value=5.1e-12  Score=96.48  Aligned_cols=80  Identities=18%  Similarity=0.338  Sum_probs=68.3

Q ss_pred             Ee-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC--CCCCCCCCCCcEEEEEE
Q psy14385        133 EI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT--CIPNYPDKNLPTLFIYF  203 (228)
Q Consensus       133 eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~--~~~~y~v~~LPTllvYk  203 (228)
                      +| |.++|...+. +  +.+|||+|    |++|+.|.+.|..++.+|.  .++|++++++.  .+..|.++++||+++|+
T Consensus         3 ~i~~~~~~~~~i~-~--~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~   79 (102)
T cd02948           3 EINNQEEWEELLS-N--KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYK   79 (102)
T ss_pred             EccCHHHHHHHHc-c--CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEE
Confidence            35 6677877664 3  35888988    9999999999999999996  37899999883  45899999999999999


Q ss_pred             CCEEEeEEeCcc
Q psy14385        204 EGKMQSQMVGPD  215 (228)
Q Consensus       204 ~G~~v~~lvG~~  215 (228)
                      +|+.+.+++|..
T Consensus        80 ~g~~~~~~~G~~   91 (102)
T cd02948          80 NGELVAVIRGAN   91 (102)
T ss_pred             CCEEEEEEecCC
Confidence            999999999964

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.8e-12  Score=117.28  Aligned_cols=88  Identities=18%  Similarity=0.344  Sum_probs=81.8

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .+++||..+|.++|..+|..++|+|.|    |++|+.+.|.|++|+..|. .++++|||++..   +..|++++|||+.+
T Consensus        24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a  103 (304)
T COG3118          24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA  103 (304)
T ss_pred             cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence            399999999999999999888999999    9999999999999999996 589999999984   58999999999999


Q ss_pred             EECCEEEeEEeCcccc
Q psy14385        202 YFEGKMQSQMVGPDEF  217 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~~  217 (228)
                      |++|++|+.|.|..+-
T Consensus       104 f~dGqpVdgF~G~qPe  119 (304)
T COG3118         104 FKDGQPVDGFQGAQPE  119 (304)
T ss_pred             eeCCcCccccCCCCcH
Confidence            9999999999998754

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.33  E-value=6.1e-12  Score=97.66  Aligned_cols=85  Identities=8%  Similarity=0.033  Sum_probs=73.0

Q ss_pred             EEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        132 LEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       132 ~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      +.++.++|.+.+...+.+++|||+|    |++|+.+.+.|.+++++++  .+.|++||.+..   ...|+++++||+++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            4568889988876544457899999    9999999999999999996  589999998763   578999999999999


Q ss_pred             ECCEEEeEEeCccc
Q psy14385        203 FEGKMQSQMVGPDE  216 (228)
Q Consensus       203 k~G~~v~~lvG~~~  216 (228)
                      ++|+.+..+.|...
T Consensus        87 ~~g~~~~~~~G~~~  100 (111)
T cd02963          87 INGQVTFYHDSSFT  100 (111)
T ss_pred             ECCEEEEEecCCCC
Confidence            99999999999653

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.32  E-value=6e-12  Score=95.08  Aligned_cols=83  Identities=12%  Similarity=0.218  Sum_probs=71.1

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|++++..+|...+.+.   .+|+|.|    |++|+.|.+.|+++|.++. .++|++||.++.   ...|+++.+||+++
T Consensus         2 ~~~~l~~~~f~~~v~~~---~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   78 (101)
T cd03003           2 EIVTLDRGDFDAAVNSG---EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV   78 (101)
T ss_pred             CeEEcCHhhHHHHhcCC---CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence            47788999999888533   4677777    9999999999999999996 479999999974   47899999999999


Q ss_pred             EECCEEEeEEeCcc
Q psy14385        202 YFEGKMQSQMVGPD  215 (228)
Q Consensus       202 Yk~G~~v~~lvG~~  215 (228)
                      |++|+.+..+.|..
T Consensus        79 ~~~g~~~~~~~G~~   92 (101)
T cd03003          79 FPSGMNPEKYYGDR   92 (101)
T ss_pred             EcCCCCcccCCCCC
Confidence            99999888888754

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.31  E-value=1.3e-11  Score=91.96  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             hHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385        138 TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      +|.+.|.++ .+.+|||+|    |++|+.+.+.|.+++..|+ .+.|++||++..   ...|++.++||+++|++|+.+.
T Consensus         2 ~f~~~i~~~-~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~   80 (96)
T cd02956           2 NFQQVLQES-TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD   80 (96)
T ss_pred             ChHHHHHhc-CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence            577778655 346888888    9999999999999999996 478999999985   4789999999999999999999


Q ss_pred             EEeCcc
Q psy14385        210 QMVGPD  215 (228)
Q Consensus       210 ~lvG~~  215 (228)
                      .+.|..
T Consensus        81 ~~~g~~   86 (96)
T cd02956          81 GFQGAQ   86 (96)
T ss_pred             eecCCC
Confidence            999865

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.27  E-value=2.5e-11  Score=90.76  Aligned_cols=82  Identities=23%  Similarity=0.435  Sum_probs=70.8

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      +++++.++|...+.+ +   +|+|+|    |++|+.+.+.|.++|.++.    .++|+++|.+..   ...|++.++||+
T Consensus         2 ~~~l~~~~f~~~~~~-~---~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   77 (102)
T cd03005           2 VLELTEDNFDHHIAE-G---NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTL   77 (102)
T ss_pred             eeECCHHHHHHHhhc-C---CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEE
Confidence            678899999988853 2   377777    9999999999999999984    589999998863   478999999999


Q ss_pred             EEEECCEEEeEEeCccc
Q psy14385        200 FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~  216 (228)
                      ++|++|..+.++.|...
T Consensus        78 ~~~~~g~~~~~~~G~~~   94 (102)
T cd03005          78 LLFKDGEKVDKYKGTRD   94 (102)
T ss_pred             EEEeCCCeeeEeeCCCC
Confidence            99999999999999764

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.25  E-value=2.6e-11  Score=92.81  Aligned_cols=77  Identities=13%  Similarity=0.291  Sum_probs=65.1

Q ss_pred             hHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC-CC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385        138 TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST-TC---IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad-~~---~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      .+++-+.. .++.+|||+|    |++|+.|.+.|+++|++|+++.|++||.+ ..   ...|++.++||+++|++| .+.
T Consensus         8 ~~~~~~~~-~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~   85 (100)
T cd02999           8 IALDLMAF-NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRV   85 (100)
T ss_pred             HHHHHHHh-cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-cee
Confidence            34444443 3578899999    99999999999999999999999999987 42   478999999999999999 888


Q ss_pred             EEeCccc
Q psy14385        210 QMVGPDE  216 (228)
Q Consensus       210 ~lvG~~~  216 (228)
                      ++.|...
T Consensus        86 ~~~G~~~   92 (100)
T cd02999          86 RYNGTRT   92 (100)
T ss_pred             EecCCCC
Confidence            8888643

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.23  E-value=8e-11  Score=93.69  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=64.4

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-----CC---------CCC-
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT-----CI---------PNY-  191 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-----~~---------~~y-  191 (228)
                      +.+|+.++|.+.+.+.   ..+||.|    ||+|+.|.|.|.+++.+ .+.+|+.+|++.     .+         ..| 
T Consensus         8 ~~~it~~~~~~~i~~~---~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~   83 (122)
T TIGR01295         8 LEVTTVVRALEALDKK---ETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG   83 (122)
T ss_pred             ceecCHHHHHHHHHcC---CcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence            5678999999988654   3577777    99999999999999999 446788888773     11         234 


Q ss_pred             ---CCCCCcEEEEEECCEEEeEEeCc
Q psy14385        192 ---PDKNLPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       192 ---~v~~LPTllvYk~G~~v~~lvG~  214 (228)
                         ++.++|||++|++|+.+++++|.
T Consensus        84 i~~~i~~~PT~v~~k~Gk~v~~~~G~  109 (122)
T TIGR01295        84 IPTSFMGTPTFVHITDGKQVSVRCGS  109 (122)
T ss_pred             CcccCCCCCEEEEEeCCeEEEEEeCC
Confidence               56669999999999999999994

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.22  E-value=5.9e-11  Score=90.80  Aligned_cols=83  Identities=18%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----C---CcEEEEEeCCCC---CCCCCCCC
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----P---TTKFIKSISTTC---IPNYPDKN  195 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p---~~KFvkI~ad~~---~~~y~v~~  195 (228)
                      .|.+++.++|.+.+. .+  .+|+|+|    |++|+.+.+.|+++|.++    +   .++|+++|++..   ..+|++.+
T Consensus         2 ~v~~l~~~~f~~~i~-~~--~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~   78 (108)
T cd02996           2 EIVSLTSGNIDDILQ-SA--ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK   78 (108)
T ss_pred             ceEEcCHhhHHHHHh-cC--CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence            578899999998774 32  5788888    999999999999999874    3   389999999874   47899999


Q ss_pred             CcEEEEEECCEE-EeEEeCcc
Q psy14385        196 LPTLFIYFEGKM-QSQMVGPD  215 (228)
Q Consensus       196 LPTllvYk~G~~-v~~lvG~~  215 (228)
                      +||+++|++|+. ...+.|..
T Consensus        79 ~Ptl~~~~~g~~~~~~~~g~~   99 (108)
T cd02996          79 YPTLKLFRNGMMMKREYRGQR   99 (108)
T ss_pred             CCEEEEEeCCcCcceecCCCC
Confidence            999999999994 46666644

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PRK10996 thioredoxin 2; Provisional

Probab=99.22  E-value=8.6e-11  Score=95.04  Aligned_cols=85  Identities=20%  Similarity=0.390  Sum_probs=72.9

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      |.+.+++..+|.+.+. .  +.+|+|.|    |++|+.|.+.|..++.++. .+.|+++|.+..   ...|++.++||++
T Consensus        35 ~~~i~~~~~~~~~~i~-~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptli  111 (139)
T PRK10996         35 GEVINATGETLDKLLQ-D--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIM  111 (139)
T ss_pred             CCCEEcCHHHHHHHHh-C--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence            4567788888887664 3  35788888    9999999999999999985 699999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+..+.|...
T Consensus       112 i~~~G~~v~~~~G~~~  127 (139)
T PRK10996        112 IFKNGQVVDMLNGAVP  127 (139)
T ss_pred             EEECCEEEEEEcCCCC
Confidence            9999999999999653

>TIGR01068 thioredoxin thioredoxin

Probab=99.21  E-value=8.9e-11  Score=86.67  Aligned_cols=80  Identities=24%  Similarity=0.426  Sum_probs=69.0

Q ss_pred             eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385        134 INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       134 Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G  205 (228)
                      |+.++|...+.+.+  ..|+|+|    |+.|+.+.+.|+.++++++ .++|+++|.+..   ...|++.++||+++|++|
T Consensus         1 i~~~~~~~~~~~~~--~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g   78 (101)
T TIGR01068         1 LTDANFDETIASSD--KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG   78 (101)
T ss_pred             CCHHHHHHHHhhcC--CcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence            46678888887543  5788888    9999999999999999997 599999998874   478999999999999999


Q ss_pred             EEEeEEeCcc
Q psy14385        206 KMQSQMVGPD  215 (228)
Q Consensus       206 ~~v~~lvG~~  215 (228)
                      +.+..+.|..
T Consensus        79 ~~~~~~~g~~   88 (101)
T TIGR01068        79 KEVDRSVGAL   88 (101)
T ss_pred             cEeeeecCCC
Confidence            9999888865

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.13  E-value=2.4e-10  Score=89.37  Aligned_cols=75  Identities=17%  Similarity=0.234  Sum_probs=62.1

Q ss_pred             hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      ++|.+.+.+   +..|||+|    |++|+.|.+.|+++|.+++.++|+++|.++.   ...|+++++||+++|++|...+
T Consensus        13 ~~~~~~l~~---~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~   89 (113)
T cd02975          13 EEFFKEMKN---PVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG   89 (113)
T ss_pred             HHHHHHhCC---CeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence            346666643   24678887    9999999999999999999999999999974   5889999999999999987665


Q ss_pred             --EEeCc
Q psy14385        210 --QMVGP  214 (228)
Q Consensus       210 --~lvG~  214 (228)
                        .+.|.
T Consensus        90 ~~~~~G~   96 (113)
T cd02975          90 GIRYYGL   96 (113)
T ss_pred             eEEEEec
Confidence              56664

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.12  E-value=3.1e-10  Score=84.71  Aligned_cols=82  Identities=20%  Similarity=0.277  Sum_probs=68.0

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC---cEEEEEeCCC--CCCCCCCCCCcEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT---TKFIKSISTT--CIPNYPDKNLPTLFI  201 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~---~KFvkI~ad~--~~~~y~v~~LPTllv  201 (228)
                      |..++.++|.+.+.+.+  ..|+|+|    |++|+.|.+.|.++|+.+.+   +.|+++|.+.  +...+.+.++||+++
T Consensus         2 v~~l~~~~f~~~i~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~   79 (104)
T cd02995           2 VKVVVGKNFDEVVLDSD--KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILF   79 (104)
T ss_pred             eEEEchhhhHHHHhCCC--CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence            67889999988887654  4677777    99999999999999999854   8999999876  456788899999999


Q ss_pred             EECCE--EEeEEeCc
Q psy14385        202 YFEGK--MQSQMVGP  214 (228)
Q Consensus       202 Yk~G~--~v~~lvG~  214 (228)
                      |++|.  ....+.|.
T Consensus        80 ~~~~~~~~~~~~~g~   94 (104)
T cd02995          80 FPAGDKSNPIKYEGD   94 (104)
T ss_pred             EcCCCcCCceEccCC
Confidence            99998  45555554

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.10  E-value=5.8e-10  Score=83.38  Aligned_cols=83  Identities=16%  Similarity=0.283  Sum_probs=69.8

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCC--C---CCCCCCCCCc
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTT--C---IPNYPDKNLP  197 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~--~---~~~y~v~~LP  197 (228)
                      .|.+++..+|...+.+.   .+++|+|    |++|+.+.+.+..+++++.   .+.|+++|++.  .   ...|++.++|
T Consensus         1 ~~~~l~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P   77 (104)
T cd02997           1 DVVHLTDEDFRKFLKKE---KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP   77 (104)
T ss_pred             CeEEechHhHHHHHhhC---CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence            36788888998887643   3677777    9999999999999999875   47899999886  3   3689999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+.+..+.|..
T Consensus        78 t~~~~~~g~~~~~~~g~~   95 (104)
T cd02997          78 TFKYFENGKFVEKYEGER   95 (104)
T ss_pred             EEEEEeCCCeeEEeCCCC
Confidence            999999999998888854

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.10  E-value=2.6e-10  Score=86.43  Aligned_cols=74  Identities=16%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC--C---CCCCCCCCCcEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT--C---IPNYPDKNLPTLF  200 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~--~---~~~y~v~~LPTll  200 (228)
                      |++++.++|...|.+.+  .+|+|+|    |++|+.+.+.|.++|+++. .+.|+.++.+.  .   ...|++.++||++
T Consensus         2 v~~l~~~~~~~~i~~~~--~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTN--YTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCC--CeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            67899999999987653  5788888    9999999999999999986 47899999886  2   4689999999999


Q ss_pred             EEECCE
Q psy14385        201 IYFEGK  206 (228)
Q Consensus       201 vYk~G~  206 (228)
                      +|++|.
T Consensus        80 ~~~~~~   85 (109)
T cd03002          80 VFRPPK   85 (109)
T ss_pred             EEeCCC
Confidence            999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.09  E-value=4.4e-10  Score=84.54  Aligned_cols=80  Identities=20%  Similarity=0.318  Sum_probs=66.2

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      .|.+++.++|.+.+ + +  . ++|+|    |++|+.+.+.|+++|..+.  .+.|.++|++..   ..+|.+.++||++
T Consensus         2 ~v~~l~~~~f~~~~-~-~--~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   76 (101)
T cd02994           2 NVVELTDSNWTLVL-E-G--E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY   76 (101)
T ss_pred             ceEEcChhhHHHHh-C-C--C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence            47889999998755 2 2  3 45766    9999999999999999874  589999998874   4789999999999


Q ss_pred             EEECCEEEeEEeCcc
Q psy14385        201 IYFEGKMQSQMVGPD  215 (228)
Q Consensus       201 vYk~G~~v~~lvG~~  215 (228)
                      +|++|+. ..+.|..
T Consensus        77 ~~~~g~~-~~~~G~~   90 (101)
T cd02994          77 HAKDGVF-RRYQGPR   90 (101)
T ss_pred             EeCCCCE-EEecCCC
Confidence            9999984 7777754

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.08  E-value=7.7e-10  Score=83.31  Aligned_cols=74  Identities=9%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             HHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEe
Q psy14385        141 QEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMV  212 (228)
Q Consensus       141 ~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lv  212 (228)
                      .++.+++  .+|++.|    |+.|+.+.+.++.++++++ ++.|+++|.+..   ...|.+.++||+++|++|+.+.++.
T Consensus         7 ~~~~~~~--~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~   84 (97)
T cd02949           7 KLYHESD--RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS   84 (97)
T ss_pred             HHHHhCC--CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence            4555543  5788888    9999999999999999996 589999999864   4789999999999999999999999


Q ss_pred             Cccc
Q psy14385        213 GPDE  216 (228)
Q Consensus       213 G~~~  216 (228)
                      |...
T Consensus        85 g~~~   88 (97)
T cd02949          85 GVKM   88 (97)
T ss_pred             CCcc
Confidence            9764

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.04  E-value=1.2e-09  Score=81.75  Aligned_cols=81  Identities=16%  Similarity=0.245  Sum_probs=67.4

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |.+++.++|.+.+.+..  .+|+|.|    |++|+.+.+.|..+|++++ .+.|+++|.+..   ..+|+++++||+++|
T Consensus         2 v~~l~~~~~~~~i~~~~--~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVELTDSNFDKKVLNSD--DVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEcCHHhHHHHHhcCC--CcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            67889999999887553  5677777    9999999999999999985 589999999874   478999999999999


Q ss_pred             ECC-EEEeEEeC
Q psy14385        203 FEG-KMQSQMVG  213 (228)
Q Consensus       203 k~G-~~v~~lvG  213 (228)
                      ++| .....+.|
T Consensus        80 ~~~~~~~~~~~g   91 (103)
T cd03001          80 GAGKNSPQDYQG   91 (103)
T ss_pred             CCCCcceeecCC
Confidence            999 44444544

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.03  E-value=1e-09  Score=84.60  Aligned_cols=84  Identities=14%  Similarity=0.215  Sum_probs=66.4

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC-C---C-CCCCCCCCcE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT-C---I-PNYPDKNLPT  198 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~-~---~-~~y~v~~LPT  198 (228)
                      .|.+++.++|...+.....+.+|+|+|    |++|+.|.+.|.++|++|.  ++.|++|+++. .   + ..|++..+||
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            478899999987775333346788888    9999999999999999996  48899999875 2   2 3599999999


Q ss_pred             EEEEECCE-EEeEEeC
Q psy14385        199 LFIYFEGK-MQSQMVG  213 (228)
Q Consensus       199 llvYk~G~-~v~~lvG  213 (228)
                      +++|.+|. ....+.|
T Consensus        82 i~~f~~~~~~~~~y~g   97 (109)
T cd02993          82 ILFFPKNSRQPIKYPS   97 (109)
T ss_pred             EEEEcCCCCCceeccC
Confidence            99998874 3444444

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.03  E-value=2.4e-09  Score=76.40  Aligned_cols=76  Identities=29%  Similarity=0.497  Sum_probs=65.7

Q ss_pred             hHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC---CCCCCCCCCCcEEEEEECCEEEeE
Q psy14385        138 TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT---CIPNYPDKNLPTLFIYFEGKMQSQ  210 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~---~~~~y~v~~LPTllvYk~G~~v~~  210 (228)
                      +|...+...   .+++|+|    |+.|+.+.+.|..++.+++++.|+.++.+.   ....|++.++||+++|++|+.+..
T Consensus         2 ~~~~~~~~~---~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~   78 (93)
T cd02947           2 EFEELIKSA---KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR   78 (93)
T ss_pred             chHHHHhcC---CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEE
Confidence            466666644   4677777    999999999999999999999999999887   357899999999999999999999


Q ss_pred             EeCccc
Q psy14385        211 MVGPDE  216 (228)
Q Consensus       211 lvG~~~  216 (228)
                      +.|...
T Consensus        79 ~~g~~~   84 (93)
T cd02947          79 VVGADP   84 (93)
T ss_pred             EecCCC
Confidence            998754

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.02  E-value=1.2e-09  Score=87.22  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe-----------ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC----------CCCCCC
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF-----------IPLCSLINNHLSELAAKFP-TTKFIKSISTT----------CIPNYP  192 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf-----------~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~----------~~~~y~  192 (228)
                      +.++|.+.|... ++.+|||+|           |++|+.|.+.|++++.+|+ .++|++|++++          ....|.
T Consensus         8 ~~~~f~~~i~~~-~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~   86 (119)
T cd02952           8 GYEEFLKLLKSH-EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK   86 (119)
T ss_pred             CHHHHHHHHHhc-CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence            457888888754 346888888           9999999999999999999 79999999974          236788


Q ss_pred             CC-CCcEEEEEECCE
Q psy14385        193 DK-NLPTLFIYFEGK  206 (228)
Q Consensus       193 v~-~LPTllvYk~G~  206 (228)
                      +. ++||+++|++|.
T Consensus        87 I~~~iPT~~~~~~~~  101 (119)
T cd02952          87 LTTGVPTLLRWKTPQ  101 (119)
T ss_pred             cccCCCEEEEEcCCc
Confidence            88 999999998885

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.99  E-value=1.4e-09  Score=85.03  Aligned_cols=87  Identities=10%  Similarity=0.120  Sum_probs=70.8

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCC-----CCCCCCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTT-----CIPNYPDKN  195 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~-----~~~~y~v~~  195 (228)
                      +.|++++.++|...|.++.  .+|||+|    |++|+.|.+.|+++|.+|.    .++|.++|.+.     ....|+++.
T Consensus         1 ~~v~~l~~~~f~~~i~~~~--~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~   78 (114)
T cd02992           1 DPVIVLDAASFNSALLGSP--SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG   78 (114)
T ss_pred             CCeEECCHHhHHHHHhcCC--CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence            4578999999999998664  5788888    9999999999999999764    38999998642     247899999


Q ss_pred             CcEEEEEECCEEEeEEeCccccC
Q psy14385        196 LPTLFIYFEGKMQSQMVGPDEFR  218 (228)
Q Consensus       196 LPTllvYk~G~~v~~lvG~~~~G  218 (228)
                      +||+++|++|. .....|..--|
T Consensus        79 ~Pt~~lf~~~~-~~~~~~~~~~~  100 (114)
T cd02992          79 YPTLRYFPPFS-KEATDGLKQEG  100 (114)
T ss_pred             CCEEEEECCCC-ccCCCCCcccC
Confidence            99999999998 55555655444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.99  E-value=1.3e-09  Score=79.43  Aligned_cols=80  Identities=21%  Similarity=0.354  Sum_probs=67.7

Q ss_pred             EeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC---CCcEEEEEeCCC---CCCCCCCCCCcEEEEE
Q psy14385        133 EINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF---PTTKFIKSISTT---CIPNYPDKNLPTLFIY  202 (228)
Q Consensus       133 eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky---p~~KFvkI~ad~---~~~~y~v~~LPTllvY  202 (228)
                      +++..+|.+.+.+..   +++|+|    |++|+.+.+.+..+|+.+   ..++|+.++.+.   ....|++.++||+++|
T Consensus         2 ~l~~~~~~~~i~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02961           2 ELTDDNFDELVKDSK---DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLF   78 (101)
T ss_pred             cccHHHHHHHHhCCC---cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEE
Confidence            577889998887552   677777    999999999999999999   679999999886   3588999999999999


Q ss_pred             ECC-EEEeEEeCcc
Q psy14385        203 FEG-KMQSQMVGPD  215 (228)
Q Consensus       203 k~G-~~v~~lvG~~  215 (228)
                      ++| ....++.|..
T Consensus        79 ~~~~~~~~~~~g~~   92 (101)
T cd02961          79 PNGSKEPVKYEGPR   92 (101)
T ss_pred             cCCCcccccCCCCc
Confidence            998 6777776654

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=98.98  E-value=1.5e-09  Score=88.23  Aligned_cols=77  Identities=17%  Similarity=0.312  Sum_probs=63.3

Q ss_pred             hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC-----CCCCCCCCCcEEEEE-ECC
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC-----IPNYPDKNLPTLFIY-FEG  205 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~-----~~~y~v~~LPTllvY-k~G  205 (228)
                      .+|...+. .  +.+|||+|    |++|+.|.+.|.+++.+|. .+.|+.|+++..     +..|.+.++||+++| ++|
T Consensus        11 ~~~~~a~~-~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G   87 (142)
T cd02950          11 TPPEVALS-N--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG   87 (142)
T ss_pred             CCHHHHHh-C--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence            34444443 3  36888888    9999999999999999996 478999888752     478999999999999 589


Q ss_pred             EEEeEEeCccc
Q psy14385        206 KMQSQMVGPDE  216 (228)
Q Consensus       206 ~~v~~lvG~~~  216 (228)
                      +++.+++|...
T Consensus        88 ~~v~~~~G~~~   98 (142)
T cd02950          88 NEEGQSIGLQP   98 (142)
T ss_pred             CEEEEEeCCCC
Confidence            99999999763

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.95  E-value=2.6e-09  Score=79.67  Aligned_cols=81  Identities=21%  Similarity=0.304  Sum_probs=66.3

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCC-C---CCCCCCCCCcEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTT-C---IPNYPDKNLPTL  199 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~-~---~~~y~v~~LPTl  199 (228)
                      |.+++.++|...+.+.  +.+|||+|    |++|+.+.+.+..+++++.   .+.|+++|.+. .   ...|++.++||+
T Consensus         2 ~~~l~~~~~~~~~~~~--~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~   79 (105)
T cd02998           2 VVELTDSNFDKVVGDD--KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL   79 (105)
T ss_pred             eEEcchhcHHHHhcCC--CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence            5788889998877544  35788888    9999999999999999985   58999999877 4   478999999999


Q ss_pred             EEEECCE-EEeEEeC
Q psy14385        200 FIYFEGK-MQSQMVG  213 (228)
Q Consensus       200 lvYk~G~-~v~~lvG  213 (228)
                      ++|++|. ....+.|
T Consensus        80 ~~~~~~~~~~~~~~g   94 (105)
T cd02998          80 KFFPKGSTEPVKYEG   94 (105)
T ss_pred             EEEeCCCCCccccCC
Confidence            9999983 4444444

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.91  E-value=6.7e-09  Score=84.41  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             eEEEEe------ccchHHHHHHHHHHHHhCC-C-cEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcccc
Q psy14385        151 WVVLHF------IPLCSLINNHLSELAAKFP-T-TKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       151 ~VVVhf------~~~C~~l~~~L~~LA~kyp-~-~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~~~  217 (228)
                      ..|++|      ++.+.-+.-+|.+||++|+ . ++|++||++..   +..|+++++|||++||||+.+++++|....
T Consensus        36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k  113 (132)
T PRK11509         36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW  113 (132)
T ss_pred             cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCH
Confidence            467777      8999999999999999998 3 89999999985   589999999999999999999999998754

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.89  E-value=9.2e-09  Score=90.25  Aligned_cols=87  Identities=16%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             CceEEeChhhHHHHHHhcC--CCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        129 GRVLEINGDTYVQEVNNAG--EGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~--~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      ..|.+++.++|.+.+....  .+.+++|.|    |++|+.+.+.++++|++|.+ +.|.++|++..   ..+|++.++||
T Consensus        30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT  109 (224)
T PTZ00443         30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT  109 (224)
T ss_pred             CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence            3588999999998775431  124667777    99999999999999999975 88999998874   47899999999


Q ss_pred             EEEEECCEEEeEEeCcc
Q psy14385        199 LFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       199 llvYk~G~~v~~lvG~~  215 (228)
                      +++|++|+.+....|..
T Consensus       110 l~~f~~G~~v~~~~G~~  126 (224)
T PTZ00443        110 LLLFDKGKMYQYEGGDR  126 (224)
T ss_pred             EEEEECCEEEEeeCCCC
Confidence            99999999988777743

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.88  E-value=5.3e-09  Score=77.54  Aligned_cols=79  Identities=16%  Similarity=0.236  Sum_probs=66.1

Q ss_pred             eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---CCCCCCCCCcEEEEEE
Q psy14385        134 INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---IPNYPDKNLPTLFIYF  203 (228)
Q Consensus       134 Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---~~~y~v~~LPTllvYk  203 (228)
                      ++.++|...+. .  +.++||+|    |+.|+.+.+.|+.+|..+.   .+.|+++|.+..   ...|++..+||+++|+
T Consensus         1 l~~~~~~~~~~-~--~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~   77 (102)
T TIGR01126         1 LTASNFDDIVL-S--NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP   77 (102)
T ss_pred             CchhhHHHHhc-c--CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEec
Confidence            35677887775 3  35778888    9999999999999999987   499999999874   4789999999999999


Q ss_pred             CCEEEeEEeCcc
Q psy14385        204 EGKMQSQMVGPD  215 (228)
Q Consensus       204 ~G~~v~~lvG~~  215 (228)
                      +|..+..+.|..
T Consensus        78 ~~~~~~~~~g~~   89 (102)
T TIGR01126        78 KGKKPVDYEGGR   89 (102)
T ss_pred             CCCcceeecCCC
Confidence            998777777753

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.87  E-value=4.2e-09  Score=79.83  Aligned_cols=77  Identities=16%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             hhHHHHHHhcCCCceEEEEe----ccchHHHHHHH---HHHHHhCC-CcEEEEEeCCCC-------CCCCCCCCCcEEEE
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHL---SELAAKFP-TTKFIKSISTTC-------IPNYPDKNLPTLFI  201 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L---~~LA~kyp-~~KFvkI~ad~~-------~~~y~v~~LPTllv  201 (228)
                      ++|.+.+. .  +.+|+|.|    |++|+.|.+.+   .+++..+. ++.|++||.+..       ..+|++.++||+++
T Consensus         2 ~~~~~~~~-~--~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953           2 AALAQALA-Q--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             HHHHHHHH-c--CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            35566554 3  25888888    99999999988   68888887 789999998752       36899999999999


Q ss_pred             EE--CCEEEeEEeCccc
Q psy14385        202 YF--EGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk--~G~~v~~lvG~~~  216 (228)
                      |+  +|+.+.++.|...
T Consensus        79 ~~~~~g~~~~~~~G~~~   95 (104)
T cd02953          79 YGPGGEPEPLRLPGFLT   95 (104)
T ss_pred             ECCCCCCCCcccccccC
Confidence            99  8999999988753

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.85  E-value=8.3e-09  Score=78.48  Aligned_cols=65  Identities=15%  Similarity=0.206  Sum_probs=53.9

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      ..|+|+|    |++|+.+.+.|+++|++|.    .+.|.+++++..   ...|++.++||+++|++|. +..+.|..
T Consensus        16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~~~~~G~~   91 (104)
T cd03000          16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-AYNYRGPR   91 (104)
T ss_pred             CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-ceeecCCC
Confidence            4788888    9999999999999999973    488999998763   4789999999999998884 45566643

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.84  E-value=9.9e-09  Score=98.53  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=65.5

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC-----CCCCCCCCCc
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC-----IPNYPDKNLP  197 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~-----~~~y~v~~LP  197 (228)
                      ..|.+++.++|...|.....+.+|||+|    |++|+.|.+.|+++|.+|.+  ++|++|+++..     ...|.+.++|
T Consensus       351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P  430 (463)
T TIGR00424       351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP  430 (463)
T ss_pred             CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence            4688999999999885222346888888    99999999999999999963  89999988742     2579999999


Q ss_pred             EEEEEECCE
Q psy14385        198 TLFIYFEGK  206 (228)
Q Consensus       198 TllvYk~G~  206 (228)
                      ||++|++|.
T Consensus       431 Tii~Fk~g~  439 (463)
T TIGR00424       431 TILFFPKHS  439 (463)
T ss_pred             eEEEEECCC
Confidence            999999996

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.79  E-value=1.7e-08  Score=87.00  Aligned_cols=76  Identities=21%  Similarity=0.293  Sum_probs=59.8

Q ss_pred             hhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCCCcE--EEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFPTTK--FIKSISTTC---IPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp~~K--FvkI~ad~~---~~~y~v~~LPTllvYk~G  205 (228)
                      +.|+..+. +  +..+++++      |++|+.|.+.|+++|.+|++++  |+++|+++.   +..|++.++||+++|++|
T Consensus        11 ~~~~~~~~-~--~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g   87 (215)
T TIGR02187        11 ELFLKELK-N--PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG   87 (215)
T ss_pred             HHHHHhcC-C--CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence            44565553 2  24555655      8999999999999999998755  667766553   589999999999999999


Q ss_pred             EEEe-EEeCcc
Q psy14385        206 KMQS-QMVGPD  215 (228)
Q Consensus       206 ~~v~-~lvG~~  215 (228)
                      +.+. +++|..
T Consensus        88 ~~~~~~~~G~~   98 (215)
T TIGR02187        88 KDGGIRYTGIP   98 (215)
T ss_pred             eeeEEEEeecC
Confidence            9985 899964

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.73  E-value=3.7e-08  Score=94.54  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=66.3

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC-C---CC-CCCCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST-T---CI-PNYPDKNL  196 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad-~---~~-~~y~v~~L  196 (228)
                      .+.|.+++.++|.+.+.....+.+|||+|    |++|+.|.+.|++||.+|.  +++|+++|++ .   .+ ..|.+.++
T Consensus       344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~  423 (457)
T PLN02309        344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF  423 (457)
T ss_pred             CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence            35789999999988775333346788888    9999999999999999985  4999999998 3   23 46999999


Q ss_pred             cEEEEEECCEE
Q psy14385        197 PTLFIYFEGKM  207 (228)
Q Consensus       197 PTllvYk~G~~  207 (228)
                      |||++|++|..
T Consensus       424 PTil~f~~g~~  434 (457)
T PLN02309        424 PTILLFPKNSS  434 (457)
T ss_pred             eEEEEEeCCCC
Confidence            99999999863

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.68  E-value=4.6e-08  Score=90.83  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHh--ccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC---
Q psy14385        106 RVLQEYRRKRIAEMKAMAE--KSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT---  176 (228)
Q Consensus       106 ~~Le~yR~kRl~ELk~~~~--~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~---  176 (228)
                      +|++.++.-+++...+...  ....|.|..++..+|.+.|.+.+  ..|+|.|    |++|+.|.+.++.+|..|.+   
T Consensus       321 ~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~--~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~  398 (462)
T TIGR01130       321 AFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDET--KDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAES  398 (462)
T ss_pred             HHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCC--CeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCC
Confidence            4566665555543322211  11357788999999999887553  5778877    99999999999999999964   


Q ss_pred             -cEEEEEeCCCC-CCCCCCCCCcEEEEEECCEEE--eEEeCc
Q psy14385        177 -TKFIKSISTTC-IPNYPDKNLPTLFIYFEGKMQ--SQMVGP  214 (228)
Q Consensus       177 -~KFvkI~ad~~-~~~y~v~~LPTllvYk~G~~v--~~lvG~  214 (228)
                       ++|+++|++.. ...|.++++||+++|++|..+  ..+.|.
T Consensus       399 ~i~~~~id~~~n~~~~~~i~~~Pt~~~~~~~~~~~~~~~~g~  440 (462)
T TIGR01130       399 DVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKSEPVPYDGD  440 (462)
T ss_pred             cEEEEEEECCCCccCCCCccccCEEEEEeCCCCcCceEecCc
Confidence             78999998763 233999999999999999764  345553

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=98.66  E-value=1e-07  Score=89.73  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      -+.|..++.++|...|.+.+  ..|+|.|    |++|+.|.+.|+++|..+.   .+.|+++|++..   +..|.++++|
T Consensus       356 ~~~v~~l~~~~f~~~v~~~~--k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~P  433 (477)
T PTZ00102        356 DGPVKVVVGNTFEEIVFKSD--KDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFP  433 (477)
T ss_pred             CCCeEEecccchHHHHhcCC--CCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccC
Confidence            45688899999999987664  5788888    9999999999999999985   488999998864   4689999999


Q ss_pred             EEEEEECCEEE-eEEeCcc
Q psy14385        198 TLFIYFEGKMQ-SQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v-~~lvG~~  215 (228)
                      |+++|++|..+ ..+.|..
T Consensus       434 t~~~~~~~~~~~~~~~G~~  452 (477)
T PTZ00102        434 TILFVKAGERTPIPYEGER  452 (477)
T ss_pred             eEEEEECCCcceeEecCcC
Confidence            99999998765 3677754

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.55  E-value=1.7e-07  Score=73.88  Aligned_cols=69  Identities=10%  Similarity=0.206  Sum_probs=55.1

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEeCCCC----CCCCCCCC--CcEEEEEE-CCEEEeEEeCccc
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSISTTC----IPNYPDKN--LPTLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~----~~~y~v~~--LPTllvYk-~G~~v~~lvG~~~  216 (228)
                      +++|+|+|    |++|+.|.+.+.+++..+ ....|+.++.+..    ...|.+.+  +||+++|. +|+++.++++...
T Consensus        19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~   98 (117)
T cd02959          19 GKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKKG   98 (117)
T ss_pred             CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCCC
Confidence            46899999    999999999999988765 3467887777643    26677875  99999995 9999997776654


Q ss_pred             c
Q psy14385        217 F  217 (228)
Q Consensus       217 ~  217 (228)
                      .
T Consensus        99 ~   99 (117)
T cd02959          99 N   99 (117)
T ss_pred             C
Confidence            3

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.53  E-value=1.1e-07  Score=71.25  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCC--CCcEEEEEEC--CEEEeE
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDK--NLPTLFIYFE--GKMQSQ  210 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~--~LPTllvYk~--G~~v~~  210 (228)
                      .++++.|    |++|..+.+.|+++|++|. .++|+.||+++.   ...|++.  ++||+++|++  |.....
T Consensus        13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~   85 (103)
T cd02982          13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLM   85 (103)
T ss_pred             CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCC
Confidence            4677777    9999999999999999995 599999999983   5789999  9999999999  655443

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.53  E-value=2.9e-07  Score=85.47  Aligned_cols=83  Identities=24%  Similarity=0.375  Sum_probs=70.1

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      .|..++.++|...+.+.   .+++|+|    |++|+.+.+.+.++|..+    +.+.|++||++..   ...|++.+.||
T Consensus         2 ~v~~l~~~~~~~~i~~~---~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   78 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSH---EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPT   78 (462)
T ss_pred             CceECCHHHHHHHHhcC---CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccE
Confidence            46788999998888643   4678888    999999999999998875    4589999999874   57899999999


Q ss_pred             EEEEECCEE-EeEEeCcc
Q psy14385        199 LFIYFEGKM-QSQMVGPD  215 (228)
Q Consensus       199 llvYk~G~~-v~~lvG~~  215 (228)
                      +++|++|.. +..+.|..
T Consensus        79 ~~~~~~g~~~~~~~~g~~   96 (462)
T TIGR01130        79 LKIFRNGEDSVSDYNGPR   96 (462)
T ss_pred             EEEEeCCccceeEecCCC
Confidence            999999998 78888854

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.48  E-value=7.4e-07  Score=76.74  Aligned_cols=56  Identities=14%  Similarity=0.070  Sum_probs=50.6

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |++|+.+.+.++.++.+++.++|.++|.+..   +..|++.++||+++|++|..   ++|..
T Consensus       145 C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~  203 (215)
T TIGR02187       145 CPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAY  203 (215)
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCC
Confidence            9999999999999999999999999999874   57899999999999999974   77754

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PTZ00102 disulphide isomerase; Provisional

Probab=98.48  E-value=5.4e-07  Score=84.86  Aligned_cols=83  Identities=13%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      ..+..++..+|...+.+.   ..|+|.|    |++|+.+.+.+..+|..+    +.+.|+++|++..   ..+|++.+.|
T Consensus        32 ~~v~~l~~~~f~~~i~~~---~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P  108 (477)
T PTZ00102         32 EHVTVLTDSTFDKFITEN---EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP  108 (477)
T ss_pred             CCcEEcchhhHHHHHhcC---CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence            357888999999888654   3677777    999999999999998664    5699999998874   4789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|..+ .+.|..
T Consensus       109 t~~~~~~g~~~-~y~g~~  125 (477)
T PTZ00102        109 TIKFFNKGNPV-NYSGGR  125 (477)
T ss_pred             EEEEEECCceE-EecCCC
Confidence            99999999987 777754

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.45  E-value=4.2e-07  Score=71.12  Aligned_cols=67  Identities=16%  Similarity=0.166  Sum_probs=54.6

Q ss_pred             ceEEEEe----ccchHHHHHHHH---HHHHhCC-CcEEEEEeCCC----------------CCCCCCCCCCcEEEEEEC-
Q psy14385        150 IWVVLHF----IPLCSLINNHLS---ELAAKFP-TTKFIKSISTT----------------CIPNYPDKNLPTLFIYFE-  204 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~---~LA~kyp-~~KFvkI~ad~----------------~~~~y~v~~LPTllvYk~-  204 (228)
                      .+|+|+|    |++|+.|.+.+.   .++..+. ++.|++|+++.                ....|++.++||+++|.+ 
T Consensus        15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~   94 (125)
T cd02951          15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPE   94 (125)
T ss_pred             CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCC
Confidence            5888888    999999999874   5666663 57788998764                236799999999999997 


Q ss_pred             -CEEEeEEeCccc
Q psy14385        205 -GKMQSQMVGPDE  216 (228)
Q Consensus       205 -G~~v~~lvG~~~  216 (228)
                       |+.+.+++|...
T Consensus        95 gg~~~~~~~G~~~  107 (125)
T cd02951          95 GGKEIARLPGYLP  107 (125)
T ss_pred             CCceeEEecCCCC
Confidence             599999999753

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.42  E-value=9.5e-07  Score=61.77  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=46.7

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v  208 (228)
                      |+++.   |++|+.+.+.|++|+..++++.|..+|+++.   ...|++.++||+++  +|+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~   63 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE   63 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence            44555   9999999999999999999999999998863   57899999999866  77544

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PHA02125 thioredoxin-like protein

Probab=98.40  E-value=8.5e-07  Score=64.24  Aligned_cols=51  Identities=14%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |++|+.+.+.|..++     .+|++||.+..   ...|++.++||++   +|+.++++.|+.
T Consensus        10 C~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~   63 (75)
T PHA02125         10 CANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVP   63 (75)
T ss_pred             CHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCC
Confidence            999999999998774     57899998874   4789999999998   899999999974

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.39  E-value=7.2e-07  Score=65.03  Aligned_cols=54  Identities=13%  Similarity=0.292  Sum_probs=46.8

Q ss_pred             ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCCCCCCCCcEEEEEECCEEEeEEeCc
Q psy14385        157 IPLCSLINNHLSELAAKFP-TTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~v~~lvG~  214 (228)
                      |++|+.+.+.+++++++++ .+.|++|+..+-+..|++.++|||++  ||+.+  +.|.
T Consensus        10 C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~--~~G~   64 (76)
T TIGR00412        10 CANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV--DGELV--IMGK   64 (76)
T ss_pred             CcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE--EEec
Confidence            9999999999999999997 48999998333356799999999999  99888  6674

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.39  E-value=1e-06  Score=66.52  Aligned_cols=52  Identities=13%  Similarity=0.185  Sum_probs=47.5

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQ  210 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~  210 (228)
                      |+.|+.+.+.+++|+..+|+++|..+|.++.   +.+|++.++||+++  ||+.+..
T Consensus        24 C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~   78 (89)
T cd03026          24 CHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF   78 (89)
T ss_pred             CCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe
Confidence            9999999999999999999999999999875   48999999999965  9987763

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.37  E-value=1.6e-06  Score=62.27  Aligned_cols=60  Identities=17%  Similarity=0.310  Sum_probs=49.4

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |.+++   |++|+.+.+.|+++|+.|+ .+.|++||.++.   ...|+++.+||+++  +|+.  .+.|..
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~   69 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAP   69 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCC
Confidence            44444   9999999999999999985 589999998763   47899999999986  8863  677754

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.33  E-value=2.2e-06  Score=66.86  Aligned_cols=67  Identities=19%  Similarity=0.133  Sum_probs=54.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCc-
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLP-  197 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LP-  197 (228)
                      +.+|||+|    |++|+.+.+.|.++++++. ++|+-|+.+.                          ....|++..+| 
T Consensus        25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~  103 (127)
T cd03010          25 GKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE  103 (127)
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence            46888888    9999999999999999984 8888777431                          12358999999 


Q ss_pred             EEEEEECCEEEeEEeCccc
Q psy14385        198 TLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~~  216 (228)
                      ++++.++|+++.++.|...
T Consensus       104 ~~~ld~~G~v~~~~~G~~~  122 (127)
T cd03010         104 TFLIDGDGIIRYKHVGPLT  122 (127)
T ss_pred             EEEECCCceEEEEEeccCC
Confidence            6666689999999999754

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>KOG0190|consensus

Probab=98.23  E-value=2.1e-06  Score=82.95  Aligned_cols=85  Identities=24%  Similarity=0.430  Sum_probs=73.1

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCC---CCCCCCCCCCc
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTT---CIPNYPDKNLP  197 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~---~~~~y~v~~LP  197 (228)
                      ..|..++.++|...|..++   +|+|-|    |++|+.|.|.+...|...    |.++.+|||++.   .+.+|.+++.|
T Consensus        25 ~~Vl~Lt~dnf~~~i~~~~---~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   25 EDVLVLTKDNFKETINGHE---FVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             cceEEEecccHHHHhccCc---eEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            4689999999999998664   787877    999999999999999875    479999999987   36899999999


Q ss_pred             EEEEEECCEEEeEEeCccc
Q psy14385        198 TLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~~  216 (228)
                      |+.+||||.....+.|...
T Consensus       102 TlkiFrnG~~~~~Y~G~r~  120 (493)
T KOG0190|consen  102 TLKIFRNGRSAQDYNGPRE  120 (493)
T ss_pred             eEEEEecCCcceeccCccc
Confidence            9999999998666667653

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.19  E-value=2.5e-06  Score=67.94  Aligned_cols=73  Identities=11%  Similarity=0.247  Sum_probs=59.9

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe-c--cchHHHHHHHHHHHHhCC----CcEEEEEeCCC--------CCCCCCCC
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF-I--PLCSLINNHLSELAAKFP----TTKFIKSISTT--------CIPNYPDK  194 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf-~--~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~--------~~~~y~v~  194 (228)
                      .++.++..+|.+.|.+.   ..|+|.| .  |-|.. .+++..||.+|-    .+.+.+|++++        ...+|+|.
T Consensus         2 g~v~L~~~nF~~~v~~~---~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~   77 (116)
T cd03007           2 GCVDLDTVTFYKVIPKF---KYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLD   77 (116)
T ss_pred             CeeECChhhHHHHHhcC---CcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCC
Confidence            36688999999988654   4799999 6  88886 488999998872    48899999942        45899999


Q ss_pred             --CCcEEEEEECCE
Q psy14385        195 --NLPTLFIYFEGK  206 (228)
Q Consensus       195 --~LPTllvYk~G~  206 (228)
                        +.|||++|++|.
T Consensus        78 ~~gyPTl~lF~~g~   91 (116)
T cd03007          78 KESYPVIYLFHGGD   91 (116)
T ss_pred             cCCCCEEEEEeCCC
Confidence              999999999995

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.18  E-value=3.4e-06  Score=82.95  Aligned_cols=85  Identities=18%  Similarity=0.269  Sum_probs=68.6

Q ss_pred             eEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHH---HHHHHhCCCcEEEEEeCCCC-------CCCCCCC
Q psy14385        131 VLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHL---SELAAKFPTTKFIKSISTTC-------IPNYPDK  194 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L---~~LA~kyp~~KFvkI~ad~~-------~~~y~v~  194 (228)
                      ..++ +.+++.+.+..+. ++++|+|+|    |++|+.|.+..   .++++++.++.|+++|.++.       ..+|++.
T Consensus       454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~  533 (571)
T PRK00293        454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL  533 (571)
T ss_pred             ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence            4566 5678888886542 257899999    99999999875   77888888999999998753       3679999


Q ss_pred             CCcEEEEEE-CCEE--EeEEeCcc
Q psy14385        195 NLPTLFIYF-EGKM--QSQMVGPD  215 (228)
Q Consensus       195 ~LPTllvYk-~G~~--v~~lvG~~  215 (228)
                      ++||+++|. +|+.  +.+++|..
T Consensus       534 g~Pt~~~~~~~G~~i~~~r~~G~~  557 (571)
T PRK00293        534 GLPTILFFDAQGQEIPDARVTGFM  557 (571)
T ss_pred             CCCEEEEECCCCCCcccccccCCC
Confidence            999999996 8998  46788864

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.17  E-value=9.8e-06  Score=59.62  Aligned_cols=64  Identities=23%  Similarity=0.411  Sum_probs=55.5

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC--------------------------CCCCCCCCCc
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC--------------------------IPNYPDKNLP  197 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~--------------------------~~~y~v~~LP  197 (228)
                      .+++|.|    |+.|+...+.|..+..+|  ++++|+.|+.+..                          ...|++.++|
T Consensus        20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P   99 (116)
T cd02966          20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLP   99 (116)
T ss_pred             CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccc
Confidence            5777777    999999999999999999  7899999888762                          4678999999


Q ss_pred             EEEEEE-CCEEEeEEeC
Q psy14385        198 TLFIYF-EGKMQSQMVG  213 (228)
Q Consensus       198 TllvYk-~G~~v~~lvG  213 (228)
                      +++++. +|+++.++.|
T Consensus       100 ~~~l~d~~g~v~~~~~g  116 (116)
T cd02966         100 TTFLIDRDGRIRARHVG  116 (116)
T ss_pred             eEEEECCCCcEEEEecC
Confidence            999995 8999988876

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02740 TraF-like TraF-like protein

Probab=98.12  E-value=9.2e-06  Score=73.02  Aligned_cols=66  Identities=11%  Similarity=0.142  Sum_probs=50.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------CCCCCCCCCCcEEEEEEC-CEEEe
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------CIPNYPDKNLPTLFIYFE-GKMQS  209 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------~~~~y~v~~LPTllvYk~-G~~v~  209 (228)
                      +.++||+|    |++|+.+.++|..++.+|. +.++-|+.+.              ....|++..+||+++++. |..+.
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~  244 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT  244 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence            46888888    9999999999999999996 4555444432              235899999999999996 55554


Q ss_pred             E-EeCcc
Q psy14385        210 Q-MVGPD  215 (228)
Q Consensus       210 ~-lvG~~  215 (228)
                      . ..|+.
T Consensus       245 ~v~~G~~  251 (271)
T TIGR02740       245 PIGFGVM  251 (271)
T ss_pred             EEEeCCC
Confidence            4 34653

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG0190|consensus

Probab=98.06  E-value=1.2e-05  Score=77.89  Aligned_cols=79  Identities=22%  Similarity=0.343  Sum_probs=68.8

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC-CCCCCCCCCcEE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC-IPNYPDKNLPTL  199 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~-~~~y~v~~LPTl  199 (228)
                      -+.|.-+-+.+|...|.+.++  -|+|.|    |++|+.+.|++++||.+|.   ++-++|||++.. ++...+.+.|||
T Consensus       365 ~~pVkvvVgknfd~iv~de~K--dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI  442 (493)
T KOG0190|consen  365 RSPVKVVVGKNFDDIVLDEGK--DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTI  442 (493)
T ss_pred             cCCeEEEeecCHHHHhhcccc--ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceE
Confidence            367999999999999987764  578877    9999999999999999984   688999999975 688888999999


Q ss_pred             EEEECCEEE
Q psy14385        200 FIYFEGKMQ  208 (228)
Q Consensus       200 lvYk~G~~v  208 (228)
                      ++|+.|...
T Consensus       443 ~~~pag~k~  451 (493)
T KOG0190|consen  443 LFFPAGHKS  451 (493)
T ss_pred             EEecCCCCC
Confidence            999999843

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=97.98  E-value=1.4e-05  Score=62.73  Aligned_cols=62  Identities=23%  Similarity=0.297  Sum_probs=48.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---------------------------CCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---------------------------IPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---------------------------~~~y~v  193 (228)
                      +++|||+|    |++|+.+.+.|.+++++|.    ++.++-|+.+..                           ...|++
T Consensus        18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   97 (131)
T cd03009          18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI   97 (131)
T ss_pred             CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence            46899999    9999999999999988763    456665554421                           246899


Q ss_pred             CCCcEEEEEE-CCEEEeE
Q psy14385        194 KNLPTLFIYF-EGKMQSQ  210 (228)
Q Consensus       194 ~~LPTllvYk-~G~~v~~  210 (228)
                      .++||+++|. +|+++.+
T Consensus        98 ~~~P~~~lid~~G~i~~~  115 (131)
T cd03009          98 EGIPTLIILDADGEVVTT  115 (131)
T ss_pred             CCCCEEEEECCCCCEEcc
Confidence            9999999996 8988766

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.92  E-value=7.3e-05  Score=59.95  Aligned_cols=66  Identities=14%  Similarity=-0.058  Sum_probs=51.3

Q ss_pred             CceEEEEe----ccchHHHHHH-H--HHHHHh-CCCcEEEEEeCCCCCC-----------CCCCCCCcEEEEE-ECCEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNH-L--SELAAK-FPTTKFIKSISTTCIP-----------NYPDKNLPTLFIY-FEGKMQ  208 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~-L--~~LA~k-yp~~KFvkI~ad~~~~-----------~y~v~~LPTllvY-k~G~~v  208 (228)
                      +++|+|+|    |+.|+.|.+. +  .+++.. +.+..+|++|+++.++           .|++.+.||++++ .+|+.+
T Consensus        15 ~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~   94 (124)
T cd02955          15 DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPF   94 (124)
T ss_pred             CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence            36899999    9999999873 3  246655 4578889999987431           3689999999999 569999


Q ss_pred             eEEeCc
Q psy14385        209 SQMVGP  214 (228)
Q Consensus       209 ~~lvG~  214 (228)
                      .+..++
T Consensus        95 ~~~~~~  100 (124)
T cd02955          95 FGGTYF  100 (124)
T ss_pred             eeeeec
Confidence            888665

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>KOG0914|consensus

Probab=97.91  E-value=1.4e-05  Score=70.34  Aligned_cols=92  Identities=21%  Similarity=0.269  Sum_probs=71.8

Q ss_pred             CCCceEEe-ChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC---CCCCCC----
Q psy14385        127 RFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKF--PTTKFIKSISTTC---IPNYPD----  193 (228)
Q Consensus       127 ~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~---~~~y~v----  193 (228)
                      +-|.+.-. +.+.+..+.+......|+|.+|   .+.|+...|++.+|+.+|  +..+|-|+|.-..   +.+|.+    
T Consensus       122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~  201 (265)
T KOG0914|consen  122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP  201 (265)
T ss_pred             CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence            34566666 4566677777665556888888   899999999999999999  5799999998763   355654    


Q ss_pred             --CCCcEEEEEECCEEEeEEeCccccC
Q psy14385        194 --KNLPTLFIYFEGKMQSQMVGPDEFR  218 (228)
Q Consensus       194 --~~LPTllvYk~G~~v~~lvG~~~~G  218 (228)
                        +.|||+++|++|+.+.+.--+..-|
T Consensus       202 ~srQLPT~ilFq~gkE~~RrP~vd~~g  228 (265)
T KOG0914|consen  202 GSRQLPTYILFQKGKEVSRRPDVDVKG  228 (265)
T ss_pred             ccccCCeEEEEccchhhhcCccccccC
Confidence              6899999999999998876655544

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=97.87  E-value=5.4e-05  Score=63.71  Aligned_cols=66  Identities=18%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------------------------CCCCCCCCCcE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------------------------IPNYPDKNLPT  198 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------------------------~~~y~v~~LPT  198 (228)
                      +++|||+|    |++|+...+.|.+++.+  +++|+-|+.++-                          ...|++.++|+
T Consensus        68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~  145 (185)
T PRK15412         68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE  145 (185)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCe
Confidence            46899999    99999999999999874  678888875430                          01578999995


Q ss_pred             -EEEEECCEEEeEEeCccc
Q psy14385        199 -LFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       199 -llvYk~G~~v~~lvG~~~  216 (228)
                       +++-++|+++.+.+|...
T Consensus       146 t~vid~~G~i~~~~~G~~~  164 (185)
T PRK15412        146 TFLIDGNGIIRYRHAGDLN  164 (185)
T ss_pred             EEEECCCceEEEEEecCCC
Confidence             555579999999999753

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=97.87  E-value=3e-05  Score=75.77  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=56.6

Q ss_pred             CCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC----------------------------C---CCCC
Q psy14385        148 EGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST----------------------------T---CIPN  190 (228)
Q Consensus       148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad----------------------------~---~~~~  190 (228)
                      ++++|||+|    |++|+.+.|.|.+|+++|.  ++.|+-|..+                            .   ....
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~  134 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS  134 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence            357899999    9999999999999999986  6788776531                            0   1256


Q ss_pred             CCCCCCcEEE-EEECCEEEeEEeCcccc
Q psy14385        191 YPDKNLPTLF-IYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       191 y~v~~LPTll-vYk~G~~v~~lvG~~~~  217 (228)
                      |.+.++||++ +.++|+++..++|....
T Consensus       135 fgV~giPTt~IIDkdGkIV~~~~G~~~~  162 (521)
T PRK14018        135 LNISVYPSWAIIGKDGDVQRIVKGSISE  162 (521)
T ss_pred             cCCCCcCeEEEEcCCCeEEEEEeCCCCH
Confidence            8999999995 55899999999997643

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.78  E-value=9.5e-05  Score=61.42  Aligned_cols=65  Identities=22%  Similarity=0.202  Sum_probs=50.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCc-
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLP-  197 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LP-  197 (228)
                      +++|||+|    |++|+.+.+.+.+++++  +++++.|+.+.                          ....|++.++| 
T Consensus        63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~  140 (173)
T TIGR00385        63 GKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPE  140 (173)
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCe
Confidence            46899999    99999999999999876  46666666431                          12457889999 


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++.++|+++...+|..
T Consensus       141 ~~~id~~G~i~~~~~G~~  158 (173)
T TIGR00385       141 TFLVDGNGVILYRHAGPL  158 (173)
T ss_pred             EEEEcCCceEEEEEeccC
Confidence            555668999999999964

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=97.77  E-value=6.6e-05  Score=59.36  Aligned_cols=63  Identities=21%  Similarity=0.320  Sum_probs=48.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC----------------------------CCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC----------------------------IPNYP  192 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~----------------------------~~~y~  192 (228)
                      +++|||+|    |++|+.+.+.|.+++++|.    .+.++-|+.+.-                            ...|+
T Consensus        17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   96 (132)
T cd02964          17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK   96 (132)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence            46889999    9999999999999988774    355655544321                            13489


Q ss_pred             CCCCcEEEEEE-CCEEEeEE
Q psy14385        193 DKNLPTLFIYF-EGKMQSQM  211 (228)
Q Consensus       193 v~~LPTllvYk-~G~~v~~l  211 (228)
                      +.++||++++. +|+++.+-
T Consensus        97 v~~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          97 VEGIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             CCCCCEEEEECCCCCEEchh
Confidence            99999999996 78887664

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.76  E-value=2.9e-05  Score=58.96  Aligned_cols=68  Identities=21%  Similarity=0.275  Sum_probs=48.9

Q ss_pred             CceEEEEe----ccchHHHHHHHHH---HHHhC-CCcEEEEEeCCC-----------------------CCCCCCCCCCc
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSE---LAAKF-PTTKFIKSISTT-----------------------CIPNYPDKNLP  197 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~---LA~ky-p~~KFvkI~ad~-----------------------~~~~y~v~~LP  197 (228)
                      +.++|+.|    |+.|+.+.+.+..   ++..+ .+..++.++.+.                       ....|++.+.|
T Consensus         5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtP   84 (112)
T PF13098_consen    5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTP   84 (112)
T ss_dssp             SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccC
Confidence            46777777    9999999999986   44444 257777777663                       13568999999


Q ss_pred             EEEEEE-CCEEEeEEeCccc
Q psy14385        198 TLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvYk-~G~~v~~lvG~~~  216 (228)
                      |++++. +|+.+..+.|+..
T Consensus        85 t~~~~d~~G~~v~~~~G~~~  104 (112)
T PF13098_consen   85 TIVFLDKDGKIVYRIPGYLS  104 (112)
T ss_dssp             EEEECTTTSCEEEEEESS--
T ss_pred             EEEEEcCCCCEEEEecCCCC
Confidence            999995 8999999999864

...

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=97.75  E-value=9.3e-05  Score=57.94  Aligned_cols=66  Identities=23%  Similarity=0.320  Sum_probs=53.5

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC-----C-------------C------------CCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST-----T-------------C------------IPNYP  192 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad-----~-------------~------------~~~y~  192 (228)
                      +++|||+|    |++|....+.|.+|+++|.  ++.++-|..+     .             .            ...|+
T Consensus        23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~  102 (126)
T cd03012          23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG  102 (126)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence            45788888    9999999999999999997  4778877541     0             0            13478


Q ss_pred             CCCCcEEEEE-ECCEEEeEEeCc
Q psy14385        193 DKNLPTLFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       193 v~~LPTllvY-k~G~~v~~lvG~  214 (228)
                      +..+|+.+++ ++|+++...+|.
T Consensus       103 v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         103 NQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCcCCeEEEECCCCcEEEEEecC
Confidence            8999999999 689999999985

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.69  E-value=0.00019  Score=59.50  Aligned_cols=66  Identities=14%  Similarity=0.224  Sum_probs=48.6

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---------------C-CCC---CCCCCcEEEEEE-C-
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---------------I-PNY---PDKNLPTLFIYF-E-  204 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---------------~-~~y---~v~~LPTllvYk-~-  204 (228)
                      .++||+|    |++|+...|.|.+++++|. +.|+-|+.+..               . ..|   .+.++||.+++. + 
T Consensus        51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G  129 (153)
T TIGR02738        51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT  129 (153)
T ss_pred             CCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence            3668888    9999999999999999994 66666655431               1 224   678999999994 3 


Q ss_pred             CEEEeEEeCccc
Q psy14385        205 GKMQSQMVGPDE  216 (228)
Q Consensus       205 G~~v~~lvG~~~  216 (228)
                      |..+....|...
T Consensus       130 ~~i~~~~~G~~s  141 (153)
T TIGR02738       130 RKAYPVLQGAVD  141 (153)
T ss_pred             CEEEEEeecccC
Confidence            445667788653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.66  E-value=0.00015  Score=76.10  Aligned_cols=68  Identities=22%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             CCceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeC-----CC-------------------------CCCCC
Q psy14385        148 EGIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSIS-----TT-------------------------CIPNY  191 (228)
Q Consensus       148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~a-----d~-------------------------~~~~y  191 (228)
                      ++++|||+|    |++|+...|.|.+|+++|++  +.|+.|..     ++                         ....|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            357899999    99999999999999999975  56666631     11                         12468


Q ss_pred             CCCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        192 PDKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       192 ~v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      .+.++||+++| ++|+++.++.|..
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~  523 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEG  523 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEeccc
Confidence            99999999999 7999999999954

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=97.64  E-value=0.00024  Score=57.80  Aligned_cols=68  Identities=26%  Similarity=0.345  Sum_probs=54.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC-------------------------CCCCCCCCCCc
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT-------------------------CIPNYPDKNLP  197 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~-------------------------~~~~y~v~~LP  197 (228)
                      +++++|.|    |+.|+...+.|.+++++|++  ++|+-|..+.                         ....|++..+|
T Consensus        61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  140 (173)
T PRK03147         61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP  140 (173)
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence            35777777    99999999999999999964  7888887642                         12678999999


Q ss_pred             EEEEEE-CCEEEeEEeCccc
Q psy14385        198 TLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvYk-~G~~v~~lvG~~~  216 (228)
                      +++++. +|+++..+.|...
T Consensus       141 ~~~lid~~g~i~~~~~g~~~  160 (173)
T PRK03147        141 TTFLIDKDGKVVKVITGEMT  160 (173)
T ss_pred             eEEEECCCCcEEEEEeCCCC
Confidence            887775 8999988888653

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=97.53  E-value=0.00029  Score=54.22  Aligned_cols=67  Identities=19%  Similarity=0.261  Sum_probs=48.9

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC------------------------CCCCCCCCCCCcEEEE
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST------------------------TCIPNYPDKNLPTLFI  201 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad------------------------~~~~~y~v~~LPTllv  201 (228)
                      .++||.|    |+.|+.+.+.|..++.++. +-.+.++.+                        .....|++.++||+++
T Consensus        21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~v   99 (123)
T cd03011          21 KPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVI   99 (123)
T ss_pred             CEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEE
Confidence            5677777    9999999999999998843 222222221                        1235799999999999


Q ss_pred             EECCEEEeEEeCcccc
Q psy14385        202 YFEGKMQSQMVGPDEF  217 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~~  217 (228)
                      |.+|.++..+.|+...
T Consensus       100 id~~gi~~~~~g~~~~  115 (123)
T cd03011         100 VDPGGIVFVTTGVTSE  115 (123)
T ss_pred             EcCCCeEEEEeccCCH
Confidence            9876688888887643

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.51  E-value=0.0001  Score=52.98  Aligned_cols=64  Identities=23%  Similarity=0.440  Sum_probs=55.2

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCC-C---CCCCCC--CCCCcEEEEEECCEEEeEEeC
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSIST-T---CIPNYP--DKNLPTLFIYFEGKMQSQMVG  213 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad-~---~~~~y~--v~~LPTllvYk~G~~v~~lvG  213 (228)
                      .+++++|    |+.|+.+.+.|.+++.+++ .+.|+.+++. .   ....|.  +..+|+++++.+|..+..+.|
T Consensus        33 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  107 (127)
T COG0526          33 KPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG  107 (127)
T ss_pred             ceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence            5788885    9999999999999999998 5999999996 3   346788  899999999999988777666

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=97.50  E-value=0.00028  Score=58.18  Aligned_cols=63  Identities=17%  Similarity=0.382  Sum_probs=49.0

Q ss_pred             CCceEEEEe----ccchHHHHHHHHHHHHhCC---------CcEEEEEeCCCC---------------------------
Q psy14385        148 EGIWVVLHF----IPLCSLINNHLSELAAKFP---------TTKFIKSISTTC---------------------------  187 (228)
Q Consensus       148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---------~~KFvkI~ad~~---------------------------  187 (228)
                      ++++|+|+|    |++|+...|.|.++..++.         ++.++-|+.+.-                           
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            357899999    9999999999999876542         467777776630                           


Q ss_pred             -CCCCCCCCCcEEEEEE-CCEEEeE
Q psy14385        188 -IPNYPDKNLPTLFIYF-EGKMQSQ  210 (228)
Q Consensus       188 -~~~y~v~~LPTllvYk-~G~~v~~  210 (228)
                       ...|++.++||++++. +|+++.+
T Consensus       104 l~~~y~v~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEee
Confidence             1357889999999997 7888765

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.48  E-value=0.00048  Score=44.02  Aligned_cols=49  Identities=27%  Similarity=0.335  Sum_probs=43.5

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECC
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G  205 (228)
                      |+.|..+.+.+..++...+++.|+.++.+...      ..++...+|+++++..|
T Consensus         9 c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           9 CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            99999999999999666788999999988753      37899999999999998

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.47  E-value=0.00028  Score=52.01  Aligned_cols=56  Identities=27%  Similarity=0.354  Sum_probs=45.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC----------------------------CCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC----------------------------IPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~----------------------------~~~y~v  193 (228)
                      |++|+|.|    |++|+...+.|.++.++|+   ++.|+-|..+.-                            ...|.+
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            35788888    9999999999999999999   789988877641                            145789


Q ss_pred             CCCcEEEEEEC
Q psy14385        194 KNLPTLFIYFE  204 (228)
Q Consensus       194 ~~LPTllvYk~  204 (228)
                      .++|+++++..
T Consensus        81 ~~iP~~~lld~   91 (95)
T PF13905_consen   81 NGIPTLVLLDP   91 (95)
T ss_dssp             TSSSEEEEEET
T ss_pred             CcCCEEEEECC
Confidence            99999999875

...

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=97.45  E-value=0.00057  Score=51.84  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=44.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC---C--------------------CCCCCCCCCcEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT---C--------------------IPNYPDKNLPTLF  200 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~---~--------------------~~~y~v~~LPTll  200 (228)
                      +++|||+|    |++|+.+.+.|++++++|. ++.++.+..+.   .                    ...|++..+|+.+
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~  100 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV  100 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence            46788888    9999999999999999884 57777552121   0                    1346677788887


Q ss_pred             EEE-CCEEEeE
Q psy14385        201 IYF-EGKMQSQ  210 (228)
Q Consensus       201 vYk-~G~~v~~  210 (228)
                      ++. +|+++.+
T Consensus       101 vid~~G~v~~~  111 (114)
T cd02967         101 LLDEAGVIAAK  111 (114)
T ss_pred             EECCCCeEEec
Confidence            775 5766543

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>KOG0911|consensus

Probab=97.41  E-value=5.8e-05  Score=66.29  Aligned_cols=83  Identities=20%  Similarity=0.349  Sum_probs=71.3

Q ss_pred             ceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|.+| ..++|   ...+  +..+|+||    +.+|..|+.++..+|...+++.|++++++..   +..+.+.+.|++.+
T Consensus         2 ~v~~i~~~~~f---~~~~--~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~   76 (227)
T KOG0911|consen    2 TVQFIVFQEQF---LDQK--GKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF   76 (227)
T ss_pred             CceeehhHHHH---HHhc--cchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence            46677 55777   3223  46789999    9999999999999999999999999999984   58899999999999


Q ss_pred             EECCEEEeEEeCcccc
Q psy14385        202 YFEGKMQSQMVGPDEF  217 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~~  217 (228)
                      +..|+.+..+.|.+..
T Consensus        77 ~~~~~~v~~l~~~~~~   92 (227)
T KOG0911|consen   77 FFLGEKVDRLSGADPP   92 (227)
T ss_pred             eecchhhhhhhccCcH
Confidence            9999999999998754

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.18  E-value=0.0022  Score=49.48  Aligned_cols=68  Identities=13%  Similarity=0.164  Sum_probs=50.7

Q ss_pred             CceEEEEe----ccchHHHHH-HHH--HHHHhC-CCcEEEEEeCCC-----CCCCCCCCCCcEEEEEE--CCEEEeEEeC
Q psy14385        149 GIWVVLHF----IPLCSLINN-HLS--ELAAKF-PTTKFIKSISTT-----CIPNYPDKNLPTLFIYF--EGKMQSQMVG  213 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~-~L~--~LA~ky-p~~KFvkI~ad~-----~~~~y~v~~LPTllvYk--~G~~v~~lvG  213 (228)
                      +++++|+|    |+.|+.|.. .|.  .+.+.. .+.-+++++++.     .+..|++.++||++++.  +|+.+.++.|
T Consensus        17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G   96 (114)
T cd02958          17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG   96 (114)
T ss_pred             CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence            47999999    999999975 332  233222 245566777764     35789999999999997  6999999999


Q ss_pred             ccc
Q psy14385        214 PDE  216 (228)
Q Consensus       214 ~~~  216 (228)
                      ...
T Consensus        97 ~~~   99 (114)
T cd02958          97 NIT   99 (114)
T ss_pred             CCC
Confidence            753

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=97.08  E-value=0.0017  Score=51.58  Aligned_cols=68  Identities=29%  Similarity=0.379  Sum_probs=54.2

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC------------------------CCCCCCC---
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC------------------------IPNYPDK---  194 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~------------------------~~~y~v~---  194 (228)
                      +++|||+|     |++|+.-.+.|.+|+++|  .++.|+-|.++..                        ...|++.   
T Consensus        28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  107 (146)
T PF08534_consen   28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIME  107 (146)
T ss_dssp             TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEEC
T ss_pred             CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcccc
Confidence            46788887     999999999999999986  3588887776531                        1457777   


Q ss_pred             ------CCcEE-EEEECCEEEeEEeCccc
Q psy14385        195 ------NLPTL-FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       195 ------~LPTl-lvYk~G~~v~~lvG~~~  216 (228)
                            .+|++ +|-++|+++...+|...
T Consensus       108 ~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  108 DPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             CTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             ccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                  99975 66788999999999775

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>KOG0912|consensus

Probab=97.04  E-value=0.00072  Score=62.27  Aligned_cols=71  Identities=21%  Similarity=0.333  Sum_probs=56.4

Q ss_pred             hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHh----CCC--cEEEEEeCCC---CCCCCCCCCCcEEEEEE
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAK----FPT--TKFIKSISTT---CIPNYPDKNLPTLFIYF  203 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~k----yp~--~KFvkI~ad~---~~~~y~v~~LPTllvYk  203 (228)
                      ++....+..+   ..|+|.|    |+-+++|.|++++-|++    ||+  +-+.+||++.   .+.+|.+.--||+-+|+
T Consensus         4 ~N~~~il~s~---elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    4 ENIDSILDSN---ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             ccHHHhhccc---eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            4444444433   4788888    99999999999999976    574  5566777775   46899999999999999


Q ss_pred             CCEEEeE
Q psy14385        204 EGKMQSQ  210 (228)
Q Consensus       204 ~G~~v~~  210 (228)
                      ||.+..+
T Consensus        81 nG~~~~r   87 (375)
T KOG0912|consen   81 NGEMMKR   87 (375)
T ss_pred             ccchhhh
Confidence            9998873

>KOG0191|consensus

Probab=96.96  E-value=0.0012  Score=61.44  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=63.8

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      ...|....++...|...+.... +.++|.++   |++|+.+.+.+..+|..+-+ +++..||.+..   ...|.+.+.||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPt  104 (383)
T KOG0191|consen   26 LASGVVSELTLDSFFDFLLKDD-SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPT  104 (383)
T ss_pred             ccccchhhhhccccHHHhhccC-CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcE
Confidence            3455666666566665555443 23444444   99999999999999999866 88999998863   58999999999


Q ss_pred             EEEEECCEEEeEEeC
Q psy14385        199 LFIYFEGKMQSQMVG  213 (228)
Q Consensus       199 llvYk~G~~v~~lvG  213 (228)
                      +.+|+.|...-.+.|
T Consensus       105 l~~f~~~~~~~~~~~  119 (383)
T KOG0191|consen  105 LKVFRPGKKPIDYSG  119 (383)
T ss_pred             EEEEcCCCceeeccC
Confidence            999999933333334

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=96.95  E-value=0.0027  Score=49.97  Aligned_cols=84  Identities=18%  Similarity=0.250  Sum_probs=61.5

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCCCcEEEEEeCCC----CCCCCCCCCCcEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFPTTKFIKSISTT----CIPNYPDKNLPTLF  200 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~----~~~~y~v~~LPTll  200 (228)
                      ...++.+++..-+...   ...|++|      ++.|.-+.=+|-+|.+.|+..-..-+.+..    ...+|++...|+++
T Consensus        11 ~~~vd~~~ld~~l~~~---~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv   87 (107)
T PF07449_consen   11 WPRVDADTLDAFLAAP---GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV   87 (107)
T ss_dssp             EEEE-CCCHHHHHHCC---SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred             CeeechhhHHHHHhCC---CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence            3355555555555443   2567777      788888999999999999985544443322    34889999999999


Q ss_pred             EEECCEEEeEEeCcccc
Q psy14385        201 IYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~~  217 (228)
                      +||+|+.++.+.|+..+
T Consensus        88 f~R~g~~lG~i~gi~dW  104 (107)
T PF07449_consen   88 FFRDGRYLGAIEGIRDW  104 (107)
T ss_dssp             EEETTEEEEEEESSSTH
T ss_pred             EEECCEEEEEecCeecc
Confidence            99999999999998765

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=96.88  E-value=0.005  Score=49.60  Aligned_cols=76  Identities=11%  Similarity=0.137  Sum_probs=44.0

Q ss_pred             HHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCC---CC---CCCCCCCCcEEEEE-ECCEEE
Q psy14385        139 YVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTT---CI---PNYPDKNLPTLFIY-FEGKMQ  208 (228)
Q Consensus       139 f~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~---~~---~~y~v~~LPTllvY-k~G~~v  208 (228)
                      ....+....++..++|..   ||.|...-|+|..+|...|.+.+--+..++   ..   ...+.+.+|||+++ ++|+.+
T Consensus        32 ~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l  111 (129)
T PF14595_consen   32 QIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL  111 (129)
T ss_dssp             HHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred             HHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence            333444333333445544   999999999999999999976553333332   12   22678999999999 568999


Q ss_pred             eEEeCc
Q psy14385        209 SQMVGP  214 (228)
Q Consensus       209 ~~lvG~  214 (228)
                      ++++..
T Consensus       112 g~wger  117 (129)
T PF14595_consen  112 GRWGER  117 (129)
T ss_dssp             EEEESS
T ss_pred             EEEcCC
Confidence            888653

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=96.86  E-value=0.0031  Score=43.30  Aligned_cols=49  Identities=20%  Similarity=0.297  Sum_probs=37.9

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |+.|+.+.+.|+.     .++.|..+|.+..       ...+++.++||++++  |+.   ++|+.
T Consensus        10 C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~   65 (74)
T TIGR02196        10 CPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFD   65 (74)
T ss_pred             ChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCC
Confidence            9999999998876     3688888888763       234899999999985  654   56653

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=96.85  E-value=0.004  Score=53.28  Aligned_cols=65  Identities=20%  Similarity=0.350  Sum_probs=49.8

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------C--------CCCCC--CCCcEEEEE-ECCEEE-
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------I--------PNYPD--KNLPTLFIY-FEGKMQ-  208 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------~--------~~y~v--~~LPTllvY-k~G~~v-  208 (228)
                      ||+++   |++|+...+.|.+++++|. +.++-|+.+.-        .        ..|++  .++||.+++ ++|..+ 
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~  151 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL  151 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence            45544   9999999999999999995 77776665531        1        24674  699999999 789886 


Q ss_pred             eEEeCcccc
Q psy14385        209 SQMVGPDEF  217 (228)
Q Consensus       209 ~~lvG~~~~  217 (228)
                      ...+|....
T Consensus       152 ~~~~G~~~~  160 (181)
T PRK13728        152 PLLQGATDA  160 (181)
T ss_pred             EEEECCCCH
Confidence            578897653

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=96.84  E-value=0.0042  Score=51.02  Aligned_cols=62  Identities=23%  Similarity=0.409  Sum_probs=49.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC--------------------------------CCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC--------------------------------IPN  190 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~--------------------------------~~~  190 (228)
                      +.+|||.|    |+.|....+.|.+|+.+|+  ++.|+-|..+..                                ...
T Consensus        25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  104 (171)
T cd02969          25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA  104 (171)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence            35788888    9999999999999999997  689988865320                                135


Q ss_pred             CCCCCCcEEEEE-ECCEEEeE
Q psy14385        191 YPDKNLPTLFIY-FEGKMQSQ  210 (228)
Q Consensus       191 y~v~~LPTllvY-k~G~~v~~  210 (228)
                      |++..+|+++++ ++|+++.+
T Consensus       105 ~~v~~~P~~~lid~~G~v~~~  125 (171)
T cd02969         105 YGAACTPDFFLFDPDGKLVYR  125 (171)
T ss_pred             cCCCcCCcEEEECCCCeEEEe
Confidence            788999999999 58988755

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=96.77  E-value=0.0063  Score=48.71  Aligned_cols=75  Identities=21%  Similarity=0.299  Sum_probs=49.5

Q ss_pred             hhhHHHHHHhc-CCCceEEEEe-----------ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC--------C----CCC
Q psy14385        136 GDTYVQEVNNA-GEGIWVVLHF-----------IPLCSLINNHLSELAAKFP-TTKFIKSISTT--------C----IPN  190 (228)
Q Consensus       136 ~edf~~eV~~a-~~~~~VVVhf-----------~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~--------~----~~~  190 (228)
                      -++|.+.|... .++..++|.|           ||.|+...+++...-.+.| +..|+.+.+-.        +    .+.
T Consensus         5 y~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~   84 (119)
T PF06110_consen    5 YDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPD   84 (119)
T ss_dssp             HHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred             HHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcce
Confidence            35677777541 2235677777           9999999999999777776 58999887643        1    257


Q ss_pred             CCCCCCcEEEEEECCEEEeEEeC
Q psy14385        191 YPDKNLPTLFIYFEGKMQSQMVG  213 (228)
Q Consensus       191 y~v~~LPTllvYk~G~~v~~lvG  213 (228)
                      +.++++|||+-|..|   .++++
T Consensus        85 ~~l~~IPTLi~~~~~---~rL~e  104 (119)
T PF06110_consen   85 LKLKGIPTLIRWETG---ERLVE  104 (119)
T ss_dssp             C---SSSEEEECTSS----EEEH
T ss_pred             eeeeecceEEEECCC---Cccch
Confidence            999999999999988   44554

; PDB: 1V9W_A 1WOU_A.

>KOG0191|consensus

Probab=96.76  E-value=0.0029  Score=58.98  Aligned_cols=84  Identities=19%  Similarity=0.302  Sum_probs=67.7

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhC---CCcEEEEEeCCC---CCCCCCCCCCcEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKF---PTTKFIKSISTT---CIPNYPDKNLPTLF  200 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~ky---p~~KFvkI~ad~---~~~~y~v~~LPTll  200 (228)
                      .+.+.+..+|...+.... ..|+|.+|   |+.|+.|.+.++.+|..+   ..+++.+++++.   ....+.++..||++
T Consensus       145 ~v~~l~~~~~~~~~~~~~-~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~  223 (383)
T KOG0191|consen  145 EVFELTKDNFDETVKDSD-ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLK  223 (383)
T ss_pred             ceEEccccchhhhhhccC-cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEE
Confidence            488999999988777654 45666666   999999999999999987   458888999863   35889999999999


Q ss_pred             EEECCEE-EeEEeCc
Q psy14385        201 IYFEGKM-QSQMVGP  214 (228)
Q Consensus       201 vYk~G~~-v~~lvG~  214 (228)
                      +|++|.. .....|.
T Consensus       224 ~f~~~~~~~~~~~~~  238 (383)
T KOG0191|consen  224 LFPPGEEDIYYYSGL  238 (383)
T ss_pred             EecCCCccccccccc
Confidence            9999988 4444443

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=96.64  E-value=0.0084  Score=43.38  Aligned_cols=52  Identities=27%  Similarity=0.390  Sum_probs=40.7

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--CCCCCCCCCcEEEEEECCEEEeEEeC
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC--IPNYPDKNLPTLFIYFEGKMQSQMVG  213 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--~~~y~v~~LPTllvYk~G~~v~~lvG  213 (228)
                      |+.|..+.+.+.+++..+. +++--++....  +.+|++.++||+++  ||+.+  ++|
T Consensus        10 C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~~--~~G   63 (76)
T PF13192_consen   10 CPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGKVV--FVG   63 (76)
T ss_dssp             CTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTEEE--EES
T ss_pred             CCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCEEE--EEe
Confidence            9999999999999999995 66655555542  48899999999955  88865  445

...

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=96.58  E-value=0.0069  Score=49.19  Aligned_cols=65  Identities=9%  Similarity=0.187  Sum_probs=44.3

Q ss_pred             CceEEEEe----ccchHHHHHHH------HHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEE-ECCEEEeEEeCc
Q psy14385        149 GIWVVLHF----IPLCSLINNHL------SELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L------~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvY-k~G~~v~~lvG~  214 (228)
                      +++|+|.|    |+.|+.|...+      .+++.+  +.-.++++++.-   ... ....+||+++| .+|+++.+++|.
T Consensus        23 ~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~-~g~~vPtivFld~~g~vi~~i~Gy   99 (130)
T cd02960          23 NKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSP-DGQYVPRIMFVDPSLTVRADITGR   99 (130)
T ss_pred             CCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCc-cCcccCeEEEECCCCCCccccccc
Confidence            46888888    99999998864      333332  222236665422   112 23689999999 789999999997


Q ss_pred             cc
Q psy14385        215 DE  216 (228)
Q Consensus       215 ~~  216 (228)
                      ..
T Consensus       100 ~~  101 (130)
T cd02960         100 YS  101 (130)
T ss_pred             cc
Confidence            63

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=96.42  E-value=0.013  Score=45.79  Aligned_cols=67  Identities=19%  Similarity=0.187  Sum_probs=52.6

Q ss_pred             ceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------CCCCCCCCC--
Q psy14385        150 IWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------IPNYPDKNL--  196 (228)
Q Consensus       150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------~~~y~v~~L--  196 (228)
                      +++||.|     |+.|....+.|.+++++|.  ++.|+-|..+..                        ...|++...  
T Consensus        24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~  103 (140)
T cd03017          24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKK  103 (140)
T ss_pred             CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence            5677777     8999999999999999884  588888766530                        134677777  


Q ss_pred             -------cEEEEEE-CCEEEeEEeCccc
Q psy14385        197 -------PTLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       197 -------PTllvYk-~G~~v~~lvG~~~  216 (228)
                             |+.+++. +|+++..+.|...
T Consensus       104 ~~~~~~~p~~~lid~~G~v~~~~~g~~~  131 (140)
T cd03017         104 KKYMGIERSTFLIDPDGKIVKVWRKVKP  131 (140)
T ss_pred             cccCCcceeEEEECCCCEEEEEEecCCc
Confidence                   8988886 7999999999874

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=96.39  E-value=0.0086  Score=50.63  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=44.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------CCCCCCCCCCcEEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT-----------------------CIPNYPDKNLPTLFI  201 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-----------------------~~~~y~v~~LPTllv  201 (228)
                      +++|||.|    |+.|+.+.+.+.++.+++ ++.++-|..+.                       ....|++..+|+.++
T Consensus        74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l  152 (189)
T TIGR02661        74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL  152 (189)
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence            46788888    999999999999998775 35555444221                       124688999997666


Q ss_pred             E-ECCEEEeE
Q psy14385        202 Y-FEGKMQSQ  210 (228)
Q Consensus       202 Y-k~G~~v~~  210 (228)
                      + ++|+++..
T Consensus       153 ID~~G~I~~~  162 (189)
T TIGR02661       153 LDQDGKIRAK  162 (189)
T ss_pred             ECCCCeEEEc
Confidence            4 68988875

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=96.37  E-value=0.034  Score=43.93  Aligned_cols=69  Identities=19%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-----------C---------------CCCCCCC--
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC-----------I---------------PNYPDKN--  195 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-----------~---------------~~y~v~~--  195 (228)
                      +++||++|     |++|+.-.+.|.+++++|+++.|+-|+.+..           .               ..|++..  
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~  105 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD  105 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence            35788888     7999999999999999999999999887631           0               1233321  


Q ss_pred             ----CcEEEEEE-CCEEEeEEeCcccc
Q psy14385        196 ----LPTLFIYF-EGKMQSQMVGPDEF  217 (228)
Q Consensus       196 ----LPTllvYk-~G~~v~~lvG~~~~  217 (228)
                          .|+.++.. +|.++...+|....
T Consensus       106 ~~~~~~~~~iid~~G~I~~~~~~~~~~  132 (143)
T cd03014         106 LGLLARAVFVIDENGKVIYVELVPEIT  132 (143)
T ss_pred             CCccceEEEEEcCCCeEEEEEECCCcc
Confidence                57888774 89999999987543

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=96.36  E-value=0.0094  Score=41.78  Aligned_cols=53  Identities=15%  Similarity=0.216  Sum_probs=37.2

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CC-----CCCCCCCcEEEEEECCEEEeE
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IP-----NYPDKNLPTLFIYFEGKMQSQ  210 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~-----~y~v~~LPTllvYk~G~~v~~  210 (228)
                      |+++.   |++|+.+.+.|.++.-     .|-.+|.++.   ..     +++...+|++ ++.+|..+..
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~~-----~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~~   65 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLGA-----AYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLTN   65 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCC-----ceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEecC
Confidence            45555   9999999999987744     4445665542   12     2589999997 6888876654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.36  E-value=0.011  Score=51.58  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC------------CCCCCCCCCCcEEEEEECCEE
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT------------CIPNYPDKNLPTLFIYFEGKM  207 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~------------~~~~y~v~~LPTllvYk~G~~  207 (228)
                      .+-+++|    |+.|..+.++|..+|.+|. .+..|.+|..-            .+..|++..+|++++..-+..
T Consensus       121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~  195 (215)
T PF13728_consen  121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK  195 (215)
T ss_pred             CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence            3555555    9999999999999999994 45566666431            246789999999999888663

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=96.30  E-value=0.0081  Score=59.30  Aligned_cols=90  Identities=14%  Similarity=0.144  Sum_probs=70.4

Q ss_pred             cCCCce-EEeChh-hHHHHHHhcCCCceEEEEe----ccchHHHHHHHH---HHHHhCCCcEEEEEeCCCC-------CC
Q psy14385        126 SRFGRV-LEINGD-TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLS---ELAAKFPTTKFIKSISTTC-------IP  189 (228)
Q Consensus       126 ~~fG~V-~eIs~e-df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~---~LA~kyp~~KFvkI~ad~~-------~~  189 (228)
                      ..+++. ..++.. +..+.+.++ ++++|+|+|    |-.|+.+.+..=   +.+.+.+++..+++|.++.       -.
T Consensus       450 ~~~~~~~q~~s~~~~L~~~la~~-~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk  528 (569)
T COG4232         450 VSHGEFWQPISPLAELDQALAEA-KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLK  528 (569)
T ss_pred             CccchhhhccCCHHHHHHHHHhC-CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHH
Confidence            345665 667665 566666555 446999999    999999999854   5677789999999999873       27


Q ss_pred             CCCCCCCcEEEEEE-CCEEEeEEeCccc
Q psy14385        190 NYPDKNLPTLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       190 ~y~v~~LPTllvYk-~G~~v~~lvG~~~  216 (228)
                      +|++-++|++++|. +|+....+.|+..
T Consensus       529 ~~~~~G~P~~~ff~~~g~e~~~l~gf~~  556 (569)
T COG4232         529 RLGVFGVPTYLFFGPQGSEPEILTGFLT  556 (569)
T ss_pred             HcCCCCCCEEEEECCCCCcCcCCcceec
Confidence            89999999999999 7887777777654

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=96.26  E-value=0.014  Score=42.80  Aligned_cols=51  Identities=14%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------C--CCCCCCCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------I--PNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~--~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+.|+.+.+.|++|+.++.++.|..+|.+.-       .  ..++...+|+++  .||+.++
T Consensus        11 C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig   70 (85)
T PRK11200         11 CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG   70 (85)
T ss_pred             ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc
Confidence            9999999999999999888888888887641       1  234568999975  5998754

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=96.12  E-value=0.023  Score=45.66  Aligned_cols=68  Identities=13%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC------------------------CCCCCCCCCC-
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTT------------------------CIPNYPDKNL-  196 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~------------------------~~~~y~v~~L-  196 (228)
                      ++++||+|     |+.|....+.|.++++++  .++.|+-|..+.                        ....|++... 
T Consensus        30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  109 (154)
T PRK09437         30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK  109 (154)
T ss_pred             CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence            35677777     788999999999999888  358888887653                        0134555443 


Q ss_pred             -----------cEEEEE-ECCEEEeEEeCccc
Q psy14385        197 -----------PTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       197 -----------PTllvY-k~G~~v~~lvG~~~  216 (228)
                                 |+.+++ ++|.++..+.|+..
T Consensus       110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~  141 (154)
T PRK09437        110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKT  141 (154)
T ss_pred             ccccccccCcceEEEEECCCCEEEEEEcCCCc
Confidence                       666666 69999999999754

>KOG4277|consensus

Probab=95.89  E-value=0.0064  Score=56.27  Aligned_cols=61  Identities=16%  Similarity=0.258  Sum_probs=50.5

Q ss_pred             CceEEEEe---ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385        149 GIWVVLHF---IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       149 ~~~VVVhf---~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      +.|.|=++   |..|+.+.|++.++.-...    -+|.-|++++..   +..|++++.||+.+||+|-.++
T Consensus        44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d  114 (468)
T KOG4277|consen   44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID  114 (468)
T ss_pred             CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee
Confidence            46755555   9999999999999877654    378999999984   4789999999999999987664

>smart00594 UAS UAS domain

Probab=95.88  E-value=0.076  Score=41.69  Aligned_cols=76  Identities=14%  Similarity=0.108  Sum_probs=46.6

Q ss_pred             hhHHHHHHhcCC-CceEEEEe----ccchHHHHHH------HHHHHHhCCCcEEEEEeCCC-----CCCCCCCCCCcEEE
Q psy14385        137 DTYVQEVNNAGE-GIWVVLHF----IPLCSLINNH------LSELAAKFPTTKFIKSISTT-----CIPNYPDKNLPTLF  200 (228)
Q Consensus       137 edf~~eV~~a~~-~~~VVVhf----~~~C~~l~~~------L~~LA~kyp~~KFvkI~ad~-----~~~~y~v~~LPTll  200 (228)
                      ..|.+.+..+.+ +++++|+|    |+.|..|+..      +.++-.+  +.-++.++++.     .+..|.+.++|+++
T Consensus        14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~   91 (122)
T smart00594       14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVA   91 (122)
T ss_pred             CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence            344444433321 35777777    9999998764      2222222  35555677664     35889999999999


Q ss_pred             EEE-CC-----EEEeEEeCc
Q psy14385        201 IYF-EG-----KMQSQMVGP  214 (228)
Q Consensus       201 vYk-~G-----~~v~~lvG~  214 (228)
                      ++. +|     .++.++.|.
T Consensus        92 ~l~~~~g~~~~~~~~~~~G~  111 (122)
T smart00594       92 IVDPRTGQRVIEWVGVVEGE  111 (122)
T ss_pred             EEecCCCceeEEEeccccCC
Confidence            994 44     345555443

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=95.84  E-value=0.047  Score=49.08  Aligned_cols=63  Identities=13%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC------------CCCCCCCCCcEEEEEECCEEEeEEeC
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC------------IPNYPDKNLPTLFIYFEGKMQSQMVG  213 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~------------~~~y~v~~LPTllvYk~G~~v~~lvG  213 (228)
                      +-+++|    |+.|..+.++|..+|.+|. .+..|.+|..-.            +..+++..+|++++..-....-.-||
T Consensus       152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~  231 (256)
T TIGR02739       152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLA  231 (256)
T ss_pred             eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEe
Confidence            556666    9999999999999999996 577777776632            24788999999988776643333333

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=95.68  E-value=0.096  Score=42.49  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=59.2

Q ss_pred             HhccCCCceEEeChhhHHHHHHhcCCCce-EEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCC
Q psy14385        123 AEKSRFGRVLEINGDTYVQEVNNAGEGIW-VVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPD  193 (228)
Q Consensus       123 ~~~~~fG~V~eIs~edf~~eV~~a~~~~~-VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v  193 (228)
                      .....+..|.++|.+++..... .+  .+ +++.|    ......+...|..+|++|.+ +.|+.++++..   ...|++
T Consensus        71 I~~~~~P~v~~~t~~n~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i  147 (184)
T PF13848_consen   71 IKKNSFPLVPELTPENFEKLFS-SP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI  147 (184)
T ss_dssp             HHHHSSTSCEEESTTHHHHHHS-TS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT
T ss_pred             HHHhccccccccchhhHHHHhc-CC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC
Confidence            3345688899999888776554 32  34 44444    45778888999999999976 89999999953   356776


Q ss_pred             C--CCcEEEEEE
Q psy14385        194 K--NLPTLFIYF  203 (228)
Q Consensus       194 ~--~LPTllvYk  203 (228)
                      .  .+|+++++.
T Consensus       148 ~~~~~P~~vi~~  159 (184)
T PF13848_consen  148 DEDDLPALVIFD  159 (184)
T ss_dssp             TTSSSSEEEEEE
T ss_pred             CCccCCEEEEEE
Confidence            6  999999999

...

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.65  E-value=0.058  Score=52.22  Aligned_cols=50  Identities=16%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v  208 (228)
                      ||.|...-..+.++|..+|++.+-.|++...   ..+|++.++|++++  ||+.+
T Consensus       128 Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~  180 (517)
T PRK15317        128 CHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF  180 (517)
T ss_pred             CCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE
Confidence            9999999999999999999999999998875   58999999999965  77654

>TIGR02180 GRX_euk Glutaredoxin

Probab=95.61  E-value=0.02  Score=40.85  Aligned_cols=55  Identities=20%  Similarity=0.380  Sum_probs=40.0

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+++.   ||.|+.+.+.|.++.-. +...|+.++.+..        ...++...+|++  |-+|+.++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig   66 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG   66 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence            34555   99999999999998832 2367888876532        344688899997  56887654

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PTZ00056 glutathione peroxidase; Provisional

Probab=95.40  E-value=0.073  Score=45.58  Aligned_cols=36  Identities=8%  Similarity=0.071  Sum_probs=31.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS  184 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a  184 (228)
                      +++|||+|    |++|+.-.+.|.+|+++|.  ++.|+-|+.
T Consensus        39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~   80 (199)
T PTZ00056         39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT   80 (199)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence            46788888    9999999999999999996  488888864

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=95.30  E-value=0.088  Score=47.17  Aligned_cols=58  Identities=9%  Similarity=0.138  Sum_probs=46.1

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC------------CCCCCCCCCcEEEEEECCEEE
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC------------IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~------------~~~y~v~~LPTllvYk~G~~v  208 (228)
                      |-+++|    |+.|..+.++|..+|.+|. .+..|.+|..-.            ..++++..+|++++..-....
T Consensus       145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~  219 (248)
T PRK13703        145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS  219 (248)
T ss_pred             ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence            566666    9999999999999999996 677788876432            246889999999998776533

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.29  E-value=0.09  Score=50.93  Aligned_cols=50  Identities=14%  Similarity=0.222  Sum_probs=44.8

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v  208 (228)
                      ||.|...-..+.++|..+|++.+-.|++...   ..+|++..+|++++  ||+.+
T Consensus       129 Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~  181 (515)
T TIGR03140       129 CQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF  181 (515)
T ss_pred             CCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE
Confidence            9999999999999999999999988998874   58999999999976  67644

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=95.25  E-value=0.057  Score=42.44  Aligned_cols=79  Identities=9%  Similarity=0.125  Sum_probs=49.4

Q ss_pred             Ee-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCC-------CCCCCCCCC-CcE
Q psy14385        133 EI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTT-------CIPNYPDKN-LPT  198 (228)
Q Consensus       133 eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~-------~~~~y~v~~-LPT  198 (228)
                      +| +.+++.+.+.+ +...+|+++=    |+-+......|+..+...++ +.++-++.-.       +++.|+|+- -|-
T Consensus         3 ~L~t~eql~~i~~~-S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ   81 (105)
T PF11009_consen    3 PLTTEEQLEEILEE-SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ   81 (105)
T ss_dssp             E--SHHHHHHHHHH----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred             ccCCHHHHHHHHHh-cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence            46 44555555544 4456666644    77777788888888888886 8877777654       358889875 499


Q ss_pred             EEEEECCEEEeEEe
Q psy14385        199 LFIYFEGKMQSQMV  212 (228)
Q Consensus       199 llvYk~G~~v~~lv  212 (228)
                      +|+++||+++..-.
T Consensus        82 ~ili~~g~~v~~aS   95 (105)
T PF11009_consen   82 VILIKNGKVVWHAS   95 (105)
T ss_dssp             EEEEETTEEEEEEE
T ss_pred             EEEEECCEEEEECc
Confidence            99999999998753

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=95.21  E-value=0.014  Score=42.54  Aligned_cols=55  Identities=20%  Similarity=0.381  Sum_probs=39.5

Q ss_pred             CceEEEEe----ccchHHHHHHH---HHHHHhC-CCcEEEEEeCCCCCC--CCCCCCCcEEEEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHL---SELAAKF-PTTKFIKSISTTCIP--NYPDKNLPTLFIYF  203 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L---~~LA~ky-p~~KFvkI~ad~~~~--~y~v~~LPTllvYk  203 (228)
                      +++|+|+|    |+.|+.|...+   ..+.+.+ .+.-+++++.+.-..  .+....+|+++++.
T Consensus        17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld   81 (82)
T PF13899_consen   17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQGYPTFFFLD   81 (82)
T ss_dssp             TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred             CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence            47999999    99999999887   4454422 567888999876311  12225699999984

...

>KOG3425|consensus

Probab=95.10  E-value=0.12  Score=41.78  Aligned_cols=67  Identities=18%  Similarity=0.339  Sum_probs=50.2

Q ss_pred             hhHHHHHHhcCCCceEEEEe------------ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC------------CCCC
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF------------IPLCSLINNHLSELAAKFP-TTKFIKSISTTC------------IPNY  191 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf------------~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~------------~~~y  191 (228)
                      +.|.+.+.+..++..++|.|            ||.|..-.|++..--+..| +++|+.+.+-.-            .+++
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~   92 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI   92 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence            55666665543445577777            9999999999998777776 599999987652            1333


Q ss_pred             CCCCCcEEEEEEC
Q psy14385        192 PDKNLPTLFIYFE  204 (228)
Q Consensus       192 ~v~~LPTllvYk~  204 (228)
                       ..++|||+=|++
T Consensus        93 -lt~vPTLlrw~~  104 (128)
T KOG3425|consen   93 -LTAVPTLLRWKR  104 (128)
T ss_pred             -eeecceeeEEcC
Confidence             589999999996

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.08  E-value=0.11  Score=50.83  Aligned_cols=50  Identities=12%  Similarity=0.155  Sum_probs=45.0

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v  208 (228)
                      |+.|..+...+.++|...|++..-.|++...   +++|++.++|++++  ||+.+
T Consensus       488 C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~  540 (555)
T TIGR03143       488 CTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV  540 (555)
T ss_pred             CCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE
Confidence            9999999999999999999999988998875   57999999999987  77755

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=94.92  E-value=0.14  Score=42.30  Aligned_cols=67  Identities=16%  Similarity=0.169  Sum_probs=49.3

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------------------------CCCCCCCCCc
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------------------------IPNYPDKNLP  197 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------------------------~~~y~v~~LP  197 (228)
                      +++|||+|     |++|..-.+.|.+++.+|.++.++-|..+..                          ...|++...|
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~  123 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE  123 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence            45788888     8999999999999999998888888877641                          0234555555


Q ss_pred             ---------EEEEE-ECCEEEeEEeCcc
Q psy14385        198 ---------TLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       198 ---------TllvY-k~G~~v~~lvG~~  215 (228)
                               +.++. ++|.++...++..
T Consensus       124 ~~~~g~~~r~tfvId~~G~I~~~~~~~~  151 (167)
T PRK00522        124 GPLKGLLARAVFVLDENNKVVYSELVPE  151 (167)
T ss_pred             cccCCceeeEEEEECCCCeEEEEEECCC
Confidence                     55555 5888888877644

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=94.85  E-value=0.14  Score=45.34  Aligned_cols=36  Identities=19%  Similarity=0.125  Sum_probs=30.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS  184 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a  184 (228)
                      +++|||+|    |++|....+.|.+|.++|.  ++.|+-|+.
T Consensus        99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~  140 (236)
T PLN02399         99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC  140 (236)
T ss_pred             CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            35778877    9999999999999999996  478888875

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=94.81  E-value=0.15  Score=41.12  Aligned_cols=35  Identities=11%  Similarity=0.014  Sum_probs=29.6

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS  184 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a  184 (228)
                      +++|||+|    |+ |+.-.+.|.+|+++|.  ++.|+-|+.
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~   62 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC   62 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence            46888888    99 9999999999999995  588887754

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=94.71  E-value=0.18  Score=40.43  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEecc-------ch-HHHHHHHHHHHHhCC-C-cEEEEEeCCCC---CCCCCCC--
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHFIP-------LC-SLINNHLSELAAKFP-T-TKFIKSISTTC---IPNYPDK--  194 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf~~-------~C-~~l~~~L~~LA~kyp-~-~KFvkI~ad~~---~~~y~v~--  194 (228)
                      .|.+++.++.+.+....+  .+.||-|.|       .+ ..+...|..+|++|. . +.|+-+|++.-   .+.|++.  
T Consensus         3 ~~~~l~~~~~~~~~C~~~--~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~   80 (130)
T cd02983           3 EIIELTSEDVFEETCEEK--QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF   80 (130)
T ss_pred             ceEEecCHHHHHhhccCC--CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc
Confidence            588998888877665442  466666622       13 457889999999995 4 79999999873   4778874  


Q ss_pred             CCcEEEEEECCEE
Q psy14385        195 NLPTLFIYFEGKM  207 (228)
Q Consensus       195 ~LPTllvYk~G~~  207 (228)
                      ..|+++++...+.
T Consensus        81 ~~P~v~i~~~~~~   93 (130)
T cd02983          81 GYPAMVAINFRKM   93 (130)
T ss_pred             CCCEEEEEecccC
Confidence            5999999988653

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=94.66  E-value=0.12  Score=40.35  Aligned_cols=36  Identities=19%  Similarity=0.337  Sum_probs=29.5

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKF--PTTKFIKSISTT  186 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~  186 (228)
                      .||++|    |+.|+.-.+.|.++..+|  .++.++-|..+.
T Consensus        26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~   67 (149)
T cd02970          26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES   67 (149)
T ss_pred             EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence            455555    999999999999999998  468888887664

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG2603|consensus

Probab=94.58  E-value=0.14  Score=47.30  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=62.2

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCC---------CcEEEEEeCCCCC---C
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFP---------TTKFIKSISTTCI---P  189 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp---------~~KFvkI~ad~~~---~  189 (228)
                      .|+.++.+.|-.-++...++-.+||.|        |.-|.-...-+..+|+-+.         .+=|+.||.++.+   +
T Consensus        41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq  120 (331)
T KOG2603|consen   41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQ  120 (331)
T ss_pred             CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHH
Confidence            588999999999998666666788888        9999999999999998752         2348999999864   7


Q ss_pred             CCCCCCCcEEEEE
Q psy14385        190 NYPDKNLPTLFIY  202 (228)
Q Consensus       190 ~y~v~~LPTllvY  202 (228)
                      .++..++|++.+|
T Consensus       121 ~l~ln~~P~l~~f  133 (331)
T KOG2603|consen  121 QLNLNNVPHLVLF  133 (331)
T ss_pred             HhcccCCCeEEEe
Confidence            8999999999999

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=94.55  E-value=0.17  Score=41.69  Aligned_cols=70  Identities=23%  Similarity=0.299  Sum_probs=51.3

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------------CCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------------IPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------------~~~  190 (228)
                      +++|||.|     |+.|..-.+.|.+++.+|.  ++.++-|..+..                               ...
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~  108 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD  108 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence            35788877     9999999999999999984  477776654420                               123


Q ss_pred             CCCC------CCcEEEEEE-CCEEEeEEeCccccC
Q psy14385        191 YPDK------NLPTLFIYF-EGKMQSQMVGPDEFR  218 (228)
Q Consensus       191 y~v~------~LPTllvYk-~G~~v~~lvG~~~~G  218 (228)
                      |++.      .+|+.+++. +|.++...++....+
T Consensus       109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~  143 (173)
T cd03015         109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVG  143 (173)
T ss_pred             hCCccccCCceeeEEEEECCCCeEEEEEecCCCCC
Confidence            5554      467777776 899999998876554

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PLN02412 probable glutathione peroxidase

Probab=94.52  E-value=0.21  Score=41.35  Aligned_cols=36  Identities=14%  Similarity=0.075  Sum_probs=29.9

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS  184 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a  184 (228)
                      +++|||+|    |++|+.-.+.|.+|.++|.  ++.++-|++
T Consensus        29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~   70 (167)
T PLN02412         29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC   70 (167)
T ss_pred             CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence            35788877    9999998999999999996  478888764

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=94.51  E-value=0.12  Score=37.93  Aligned_cols=72  Identities=11%  Similarity=0.050  Sum_probs=50.8

Q ss_pred             EEeChhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385        132 LEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFP-TTKFIKSISTTCIPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       132 ~eIs~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~~~~y~v~~LPTllvYk~G  205 (228)
                      .+|+..+.++.+.... ..+||-+|...|......|..+|..+. .+.|.-+...+....|.+. -|++++|+.+
T Consensus         2 ~~i~s~~~l~~~~~~~-~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~-~~~i~l~~~~   74 (97)
T cd02981           2 KELTSKEELEKFLDKD-DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK-PGSVVLFKPF   74 (97)
T ss_pred             eecCCHHHHHHHhccC-CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC-CCceEEeCCc
Confidence            4675555555544443 345555556667789999999999995 7999887766655666654 5999999886

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=94.45  E-value=0.17  Score=39.27  Aligned_cols=68  Identities=26%  Similarity=0.386  Sum_probs=49.8

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC----------C---------------CCCCCCCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTT----------C---------------IPNYPDKNL  196 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~----------~---------------~~~y~v~~L  196 (228)
                      ++++||.|     |+.|....+.|.+++.+|  .++.|+-|..+.          .               ...|++...
T Consensus        22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~  101 (140)
T cd02971          22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIE  101 (140)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCccc
Confidence            35677766     999999999999999997  568888887753          1               023455555


Q ss_pred             c---------EEEEEE-CCEEEeEEeCccc
Q psy14385        197 P---------TLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       197 P---------TllvYk-~G~~v~~lvG~~~  216 (228)
                      |         ++++.. +|.++.+.+|...
T Consensus       102 ~~~~~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971         102 KSAGGGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             cccccCceeEEEEEECCCCcEEEEEecCCC
Confidence            5         666554 6999999998775

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=94.39  E-value=0.069  Score=39.50  Aligned_cols=50  Identities=18%  Similarity=0.233  Sum_probs=38.9

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-------CCCCC--CCCCCcEEEEEECCEEE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTT-------CIPNY--PDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-------~~~~y--~v~~LPTllvYk~G~~v  208 (228)
                      ||.|..+...|.++..+++.+.|..++.+.       ....+  ....+|+++  .+|+.+
T Consensus        10 Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i   68 (86)
T TIGR02183        10 CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV   68 (86)
T ss_pred             CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe
Confidence            999999999999999998888888887763       11222  347999994  588764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=94.20  E-value=0.17  Score=47.57  Aligned_cols=81  Identities=15%  Similarity=0.211  Sum_probs=56.5

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe---ccchH------HHHHHHHHHHHhC---CCcEEEEEeCCC---CCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCS------LINNHLSELAAKF---PTTKFIKSISTT---CIPNYP  192 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~------~l~~~L~~LA~ky---p~~KFvkI~ad~---~~~~y~  192 (228)
                      .-+|..++..+|.+.+.+..   .++|+|   .+..+      .|..++-+||++-   .++.|.-||+.+   .+.+++
T Consensus        33 kDRVi~LneKNfk~~lKkyd---~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLg  109 (383)
T PF01216_consen   33 KDRVIDLNEKNFKRALKKYD---VLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLG  109 (383)
T ss_dssp             S--CEEE-TTTHHHHHHH-S---EEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT
T ss_pred             ccceEEcchhHHHHHHHhhc---EEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcC
Confidence            44699999999999888764   555666   22222      2456566777764   479999999998   368999


Q ss_pred             CCCCcEEEEEECCEEEeEE
Q psy14385        193 DKNLPTLFIYFEGKMQSQM  211 (228)
Q Consensus       193 v~~LPTllvYk~G~~v~~l  211 (228)
                      +.-.+++-||++|..+.--
T Consensus       110 v~E~~SiyVfkd~~~IEyd  128 (383)
T PF01216_consen  110 VEEEGSIYVFKDGEVIEYD  128 (383)
T ss_dssp             --STTEEEEEETTEEEEE-
T ss_pred             ccccCcEEEEECCcEEEec
Confidence            9999999999999988643

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=94.02  E-value=0.24  Score=39.10  Aligned_cols=68  Identities=19%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             ceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-----------------C---------CCCCCC--
Q psy14385        150 IWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-----------------I---------PNYPDK--  194 (228)
Q Consensus       150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-----------------~---------~~y~v~--  194 (228)
                      .++||.|     |+.|..-.+.|.+++++|.  ++.|+-|..+..                 .         ..|++.  
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~  108 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE  108 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence            4566655     9999999999999999995  588888876530                 0         123443  


Q ss_pred             --CCc--EEEEE-ECCEEEeEEeCcccc
Q psy14385        195 --NLP--TLFIY-FEGKMQSQMVGPDEF  217 (228)
Q Consensus       195 --~LP--TllvY-k~G~~v~~lvG~~~~  217 (228)
                        ++|  +.+++ ++|+++....|..-.
T Consensus       109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~  136 (149)
T cd03018         109 DLGVAERAVFVIDRDGIIRYAWVSDDGE  136 (149)
T ss_pred             cCCCccceEEEECCCCEEEEEEecCCcc
Confidence              333  66666 589999999997733

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>KOG3414|consensus

Probab=93.84  E-value=0.41  Score=39.12  Aligned_cols=74  Identities=20%  Similarity=0.285  Sum_probs=56.3

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEEEECCE
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFIYFEGK  206 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~  206 (228)
                      |..+-.+.|.... ...||+.|    -|.|-.|+..|..+|..-.+ +..+-++.++.   ..-|.....||+++|.|++
T Consensus        10 s~~~VdqaI~~t~-~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k   88 (142)
T KOG3414|consen   10 SGWEVDQAILSTE-ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK   88 (142)
T ss_pred             cHHHHHHHHhccc-ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence            3445555555443 47899999    89999999999999998765 44555666663   4779999999999999987


Q ss_pred             EEe
Q psy14385        207 MQS  209 (228)
Q Consensus       207 ~v~  209 (228)
                      -+.
T Consensus        89 Hmk   91 (142)
T KOG3414|consen   89 HMK   91 (142)
T ss_pred             eEE
Confidence            554

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.56  E-value=0.089  Score=35.57  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=37.4

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC-------CCCCCCCCcEEEEEECCEEEeEE
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTCI-------PNYPDKNLPTLFIYFEGKMQSQM  211 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~-------~~y~v~~LPTllvYk~G~~v~~l  211 (228)
                      |+++.   |+.|+.+...|..+.     +.|..+|.....       ...+...+|++  |.+|..++.+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~igg~   64 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIGGY   64 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEecH
Confidence            45555   999999999998775     667777776532       23466788977  5588777644

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK15000 peroxidase; Provisional

Probab=93.45  E-value=0.32  Score=41.68  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=55.8

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------------CCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------------IPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------------~~~  190 (228)
                      +.|||++|     |+.|..-.+.|.+++.+|.  +++++-|..+..                               +..
T Consensus        34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~  113 (200)
T PRK15000         34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA  113 (200)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence            46899998     8999999999999999985  577777766620                               022


Q ss_pred             CCCC------CCcEEEEEE-CCEEEeEEeCccccCC
Q psy14385        191 YPDK------NLPTLFIYF-EGKMQSQMVGPDEFRT  219 (228)
Q Consensus       191 y~v~------~LPTllvYk-~G~~v~~lvG~~~~G~  219 (228)
                      |++.      .+|+.+++. +|.++...+|....|.
T Consensus       114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr  149 (200)
T PRK15000        114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGR  149 (200)
T ss_pred             cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCC
Confidence            5565      589988888 8999999999887773

>PTZ00256 glutathione peroxidase; Provisional

Probab=93.30  E-value=0.31  Score=40.86  Aligned_cols=28  Identities=18%  Similarity=0.097  Sum_probs=24.6

Q ss_pred             ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385        157 IPLCSLINNHLSELAAKFP--TTKFIKSIS  184 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp--~~KFvkI~a  184 (228)
                      |++|+.--+.|.++.++|.  ++.|+-|+.
T Consensus        53 Cp~C~~e~p~l~~l~~~~~~~gv~vv~vs~   82 (183)
T PTZ00256         53 CGLTSDHYTQLVELYKQYKSQGLEILAFPC   82 (183)
T ss_pred             CCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence            9999999999999999996  588888863

>KOG2501|consensus

Probab=93.04  E-value=0.38  Score=40.43  Aligned_cols=62  Identities=27%  Similarity=0.382  Sum_probs=41.8

Q ss_pred             CceEEEEe----ccchHHHHHHH----HHHHHhCCC--cEEEEEeCCC--------------------------CCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHL----SELAAKFPT--TKFIKSISTT--------------------------CIPNYP  192 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L----~~LA~kyp~--~KFvkI~ad~--------------------------~~~~y~  192 (228)
                      |+.|.+.|    |++|+.+-|+|    +++...+..  +-||.-|.+.                          +...|.
T Consensus        33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~  112 (157)
T KOG2501|consen   33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE  112 (157)
T ss_pred             CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence            46788888    99999865554    556666543  5566655542                          124789


Q ss_pred             CCCCcEEEEEE-CCEEEeE
Q psy14385        193 DKNLPTLFIYF-EGKMQSQ  210 (228)
Q Consensus       193 v~~LPTllvYk-~G~~v~~  210 (228)
                      ++.+|++.+.+ +|+.+..
T Consensus       113 v~~iP~l~i~~~dG~~v~~  131 (157)
T KOG2501|consen  113 VKGIPALVILKPDGTVVTE  131 (157)
T ss_pred             cCcCceeEEecCCCCEehH
Confidence            99999987665 5766643

>TIGR03137 AhpC peroxiredoxin

Probab=93.02  E-value=0.38  Score=40.46  Aligned_cols=69  Identities=19%  Similarity=0.268  Sum_probs=49.2

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC----------------------------CCCCCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT----------------------------CIPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~----------------------------~~~~y~v  193 (228)
                      |++|||+|     |+.|..-.+.|.++..+|.  ++.++-|..+.                            ....|++
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv  110 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV  110 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence            35788888     9999999999998888873  56776665442                            0124555


Q ss_pred             C------CCcEEEEE-ECCEEEeEEeCcccc
Q psy14385        194 K------NLPTLFIY-FEGKMQSQMVGPDEF  217 (228)
Q Consensus       194 ~------~LPTllvY-k~G~~v~~lvG~~~~  217 (228)
                      .      ..|+.+++ ++|.++...++....
T Consensus       111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~  141 (187)
T TIGR03137       111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGI  141 (187)
T ss_pred             cccCCCceeeEEEEECCCCEEEEEEEeCCCC
Confidence            4      35877777 689999988765543

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.00  E-value=0.21  Score=35.47  Aligned_cols=53  Identities=21%  Similarity=0.318  Sum_probs=38.0

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC--------CCCCCCCCcEEEEEECCEEEe
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTCI--------PNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~--------~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+++-   ||.|..+.+.|+.+...   ..++.++.+...        ..++...+|++  |-+|..++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ig   65 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIG   65 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence            44444   99999999999998874   456677765431        33467899996  77887754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PHA03050 glutaredoxin; Provisional

Probab=92.99  E-value=0.16  Score=39.58  Aligned_cols=69  Identities=13%  Similarity=0.202  Sum_probs=46.4

Q ss_pred             hhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCC--C------CCCCCCCCCCcEEEEEECC
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSIST--T------CIPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad--~------~~~~y~v~~LPTllvYk~G  205 (228)
                      .+|++.+.+.+   .|+|+-   ||.|+.....|..+.-.++....+.|+..  .      +....+.+.+|++  |-+|
T Consensus         3 ~~~v~~~i~~~---~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g   77 (108)
T PHA03050          3 EEFVQQRLANN---KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGK   77 (108)
T ss_pred             HHHHHHHhccC---CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECC
Confidence            45677666553   466665   99999999999998776665555555531  1      1233467899998  6678


Q ss_pred             EEEeE
Q psy14385        206 KMQSQ  210 (228)
Q Consensus       206 ~~v~~  210 (228)
                      +.++.
T Consensus        78 ~~iGG   82 (108)
T PHA03050         78 TSIGG   82 (108)
T ss_pred             EEEeC
Confidence            76643

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.98  E-value=0.23  Score=42.04  Aligned_cols=68  Identities=13%  Similarity=0.248  Sum_probs=50.9

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHH--hC--CCcEEEEEeCCC-------------------CCCCCCCCCCcEEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAA--KF--PTTKFIKSISTT-------------------CIPNYPDKNLPTLFI  201 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~--ky--p~~KFvkI~ad~-------------------~~~~y~v~~LPTllv  201 (228)
                      +++.++.|    |+.|..|...+..--+  +|  ++.-++.++++.                   .+..|.+++.||+++
T Consensus        42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF  121 (182)
T COG2143          42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF  121 (182)
T ss_pred             CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence            56888888    9999999887644322  22  456666666553                   246799999999999


Q ss_pred             EEC-CEEEeEEeCccc
Q psy14385        202 YFE-GKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~-G~~v~~lvG~~~  216 (228)
                      |.. |+.+.++-|..+
T Consensus       122 fdk~Gk~Il~lPGY~p  137 (182)
T COG2143         122 FDKTGKTILELPGYMP  137 (182)
T ss_pred             EcCCCCEEEecCCCCC
Confidence            976 799999988753

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=92.83  E-value=0.37  Score=32.71  Aligned_cols=49  Identities=16%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCC----CCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPN----YPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~----y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |+.|..+...|...     ++.|..++.+..   .+.    .+...+|++++  +|.   .+.|+.
T Consensus        10 c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~   65 (73)
T cd02976          10 CPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFR   65 (73)
T ss_pred             ChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCC
Confidence            99999998888763     456666666542   122    37899999976  553   455544

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=92.41  E-value=1.7  Score=35.57  Aligned_cols=72  Identities=21%  Similarity=0.255  Sum_probs=52.5

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCCC---CCCCCCCCcE-EEEEECC
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTCI---PNYPDKNLPT-LFIYFEG  205 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~~---~~y~v~~LPT-llvYk~G  205 (228)
                      |+-+--+.|... .++.||+.|    -+.|-.|+.+|..+|.+-.. ..++-++.++.+   .-|... -|+ +++|.++
T Consensus         7 s~~~VDqAI~~e-~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn   84 (133)
T PF02966_consen    7 SGWHVDQAILSE-EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN   84 (133)
T ss_dssp             SHHHHHHHHHH--SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred             ccchHHHHHhcc-CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence            444555566554 368999999    89999999999999999755 667788998854   346776 665 6666688


Q ss_pred             EEE
Q psy14385        206 KMQ  208 (228)
Q Consensus       206 ~~v  208 (228)
                      +-+
T Consensus        85 khm   87 (133)
T PF02966_consen   85 KHM   87 (133)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            744

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=92.21  E-value=0.25  Score=42.36  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=47.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHh-CCCcEE---EEEeCCC--------------------------------CC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAK-FPTTKF---IKSISTT--------------------------------CI  188 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~k-yp~~KF---vkI~ad~--------------------------------~~  188 (228)
                      |+.+||+|    |++|+.=.|.|..|+++ +|--+|   +-||.++                                ..
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~  138 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK  138 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence            46677777    99999999999999875 453111   2233332                                11


Q ss_pred             CCCCCCCCcEE--EEEECCEEEeEEeCcc
Q psy14385        189 PNYPDKNLPTL--FIYFEGKMQSQMVGPD  215 (228)
Q Consensus       189 ~~y~v~~LPTl--lvYk~G~~v~~lvG~~  215 (228)
                      ..|++.++|+.  ++=++|+++...+|..
T Consensus       139 ~~~gv~~~P~T~fVIDk~GkVv~~~~G~l  167 (184)
T TIGR01626       139 NAWQLNSEDSAIIVLDKTGKVKFVKEGAL  167 (184)
T ss_pred             HhcCCCCCCceEEEECCCCcEEEEEeCCC
Confidence            46788899544  7778899999999974

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=92.07  E-value=0.26  Score=37.31  Aligned_cols=38  Identities=32%  Similarity=0.430  Sum_probs=32.9

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT  186 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~  186 (228)
                      +.++||.|     |+.|..-.+.|.++..+|.  ++.|+-|..+.
T Consensus        25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~   69 (124)
T PF00578_consen   25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD   69 (124)
T ss_dssp             TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred             CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence            35788877     9999999999999999986  79999998874

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=92.06  E-value=1.3  Score=37.72  Aligned_cols=82  Identities=18%  Similarity=0.347  Sum_probs=58.0

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC--------------
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC--------------  187 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~--------------  187 (228)
                      |....++-.+|        .++|||++|     |+.|..-.+.|..++.+|.  ++.++-|..+..              
T Consensus        19 g~~~~v~L~d~--------~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~   90 (187)
T PRK10382         19 GEFIEVTEKDT--------EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIA   90 (187)
T ss_pred             CcceEEEHHHh--------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhcccc
Confidence            56666665555        235888887     9999999999999999983  567776665530              


Q ss_pred             --------------CCCCCC----CCC--cEEEEEE-CCEEEeEEeCccccC
Q psy14385        188 --------------IPNYPD----KNL--PTLFIYF-EGKMQSQMVGPDEFR  218 (228)
Q Consensus       188 --------------~~~y~v----~~L--PTllvYk-~G~~v~~lvG~~~~G  218 (228)
                                    ...|++    .++  |+.++.- +|.++...+.....|
T Consensus        91 ~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~  142 (187)
T PRK10382         91 KIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIG  142 (187)
T ss_pred             CCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCC
Confidence                          134555    356  9888885 899988887655544

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=91.76  E-value=0.35  Score=37.73  Aligned_cols=37  Identities=16%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             CceEEEEe----ccc-hHHHHHHHHHHHHhCCC-----cEEEEEeCC
Q psy14385        149 GIWVVLHF----IPL-CSLINNHLSELAAKFPT-----TKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~-C~~l~~~L~~LA~kyp~-----~KFvkI~ad  185 (228)
                      ++++||.|    |++ |....+.|.+++++|..     ++|+-|..+
T Consensus        22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            35788877    998 99999999999999853     888777653

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=90.92  E-value=0.37  Score=32.64  Aligned_cols=45  Identities=20%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v  208 (228)
                      |+.|+.....|+.     .++.|.-++.+..       ....+...+|++++  ||+.+
T Consensus         9 C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I   60 (60)
T PF00462_consen    9 CPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI   60 (60)
T ss_dssp             SHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred             CcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence            9999999999944     3366777776652       12238899999987  88764

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=89.95  E-value=0.63  Score=37.45  Aligned_cols=69  Identities=13%  Similarity=0.109  Sum_probs=50.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC--------CC--C----C-C----CCCC----------
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS--------TT--C----I-P----NYPD----------  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a--------d~--~----~-~----~y~v----------  193 (228)
                      |++|||.|    |++|..--+.|.+++++|.  ++.|+-|+.        +.  .    + .    .||+          
T Consensus        22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~  101 (153)
T TIGR02540        22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE  101 (153)
T ss_pred             CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence            45677767    9999999999999999995  588888874        11  0    1 1    1322          


Q ss_pred             ------------CCCc-----EEEEEECCEEEeEEeCcccc
Q psy14385        194 ------------KNLP-----TLFIYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       194 ------------~~LP-----TllvYk~G~~v~~lvG~~~~  217 (228)
                                  ..+|     |++|=++|+++..+.|....
T Consensus       102 ~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~  142 (153)
T TIGR02540       102 AEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPV  142 (153)
T ss_pred             CCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCH
Confidence                        1478     68888999999999886543

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=89.54  E-value=1.5  Score=32.22  Aligned_cols=50  Identities=10%  Similarity=0.034  Sum_probs=35.8

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECCEEEeEEeCccc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G~~v~~lvG~~~  216 (228)
                      |+.|..+...|.+     .++.|-.+|.+.-.      ...+...+|++++  +|   ..+.|+..
T Consensus        11 Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~   66 (81)
T PRK10329         11 CVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRP   66 (81)
T ss_pred             CHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCH
Confidence            9999999999965     35778777777522      2347789999965  55   34667753

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=89.52  E-value=0.89  Score=35.37  Aligned_cols=32  Identities=16%  Similarity=0.348  Sum_probs=25.6

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEE
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS  182 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI  182 (228)
                      .+|+.|    ||.|+.+.+.+..+..++++++++-.
T Consensus         7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~   42 (154)
T cd03023           7 VTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK   42 (154)
T ss_pred             EEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence            445544    99999999999999999988766544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=89.31  E-value=0.89  Score=32.76  Aligned_cols=52  Identities=21%  Similarity=0.269  Sum_probs=35.6

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      .|+|.-   |+.|+.....|..+     ++.|..++.+.-      ...++...+|.++  .||+.++
T Consensus         9 ~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ig   69 (79)
T TIGR02190         9 SVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLIG   69 (79)
T ss_pred             CEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEEc
Confidence            455544   99999999999753     456666666542      1335778999996  4887643

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK13189 peroxiredoxin; Provisional

Probab=88.33  E-value=2.4  Score=36.97  Aligned_cols=71  Identities=20%  Similarity=0.297  Sum_probs=50.0

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC------------------------------CCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC------------------------------IPNY  191 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~------------------------------~~~y  191 (228)
                      ++|||+.|     |+.|..-.+.|..++.+|  .+++++-|..+..                              +..|
T Consensus        35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y  114 (222)
T PRK13189         35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL  114 (222)
T ss_pred             CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence            46777755     999999999999999988  4677776655420                              1234


Q ss_pred             CCC-------CCcEEEEEE-CCEEEeEEeCccccCC
Q psy14385        192 PDK-------NLPTLFIYF-EGKMQSQMVGPDEFRT  219 (228)
Q Consensus       192 ~v~-------~LPTllvYk-~G~~v~~lvG~~~~G~  219 (228)
                      ++.       .+|+.+|.. +|.+....++....|.
T Consensus       115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr  150 (222)
T PRK13189        115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGR  150 (222)
T ss_pred             CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCC
Confidence            433       568777776 8999888887665553

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=87.14  E-value=1.9  Score=30.23  Aligned_cols=46  Identities=13%  Similarity=0.231  Sum_probs=33.2

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+.|+.....|++.     ++.|..++.+.-       ....+...+|++  |.||+.++
T Consensus        11 C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG   63 (73)
T cd03027          11 CEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG   63 (73)
T ss_pred             ChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence            99999999999873     466666676652       133466788988  66887665

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=87.09  E-value=1.5  Score=30.87  Aligned_cols=51  Identities=14%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECCEEEeEEeCccc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G~~v~~lvG~~~  216 (228)
                      |+.|+.....|.+.     ++.|-.+|.+...      ...+...+|++++  +|.  ..+.|+.+
T Consensus         9 Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~   65 (72)
T TIGR02194         9 CVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRP   65 (72)
T ss_pred             CHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCH
Confidence            99999999999753     5566666665421      2347789999855  453  24566653

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=86.64  E-value=1  Score=34.26  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=34.6

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC----------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC----------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~----------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      .|+|+-   ||.|..+...|.++.     +.|..++.+..          ....+...+|.+  |-+|+.++
T Consensus         9 ~Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iG   73 (99)
T TIGR02189         9 AVVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVG   73 (99)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEc
Confidence            466666   999999999998764     33334444432          122357899997  77886664

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>KOG1731|consensus

Probab=86.59  E-value=0.5  Score=47.00  Aligned_cols=77  Identities=14%  Similarity=0.244  Sum_probs=58.7

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCC-----CCCCCCCCCC
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTT-----CIPNYPDKNL  196 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~-----~~~~y~v~~L  196 (228)
                      .|++++.+.|...|..+.  ..-+|.|    |+.|+...|+++.+|..-    |-++...||.-+     ....|.|+..
T Consensus        40 ~ii~Ld~~tf~~~v~~~~--~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~  117 (606)
T KOG1731|consen   40 PIIELDVDTFNAAVFGSR--KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY  117 (606)
T ss_pred             CeEEeehhhhHHHhcccc--hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence            588899999999997653  2345555    999999999999999864    335666666432     2378999999


Q ss_pred             cEEEEEECCEEE
Q psy14385        197 PTLFIYFEGKMQ  208 (228)
Q Consensus       197 PTllvYk~G~~v  208 (228)
                      |||-.|.-+-.-
T Consensus       118 Ptlryf~~~~~~  129 (606)
T KOG1731|consen  118 PTLRYFPPDSQN  129 (606)
T ss_pred             ceeeecCCcccc
Confidence            999999876443

>PRK13190 putative peroxiredoxin; Provisional

Probab=86.51  E-value=2.7  Score=35.85  Aligned_cols=70  Identities=19%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             CceEEEE-e----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------------CCCC
Q psy14385        149 GIWVVLH-F----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------------IPNY  191 (228)
Q Consensus       149 ~~~VVVh-f----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------------~~~y  191 (228)
                      +.|||++ |    |+.|..-.+.|.+++.+|.  +++++-|..+..                              +..|
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y  106 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY  106 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence            3577775 4    9999998888988888884  577776655420                              1235


Q ss_pred             CCC------CCcEEEEEE-CCEEEeEEeCccccC
Q psy14385        192 PDK------NLPTLFIYF-EGKMQSQMVGPDEFR  218 (228)
Q Consensus       192 ~v~------~LPTllvYk-~G~~v~~lvG~~~~G  218 (228)
                      ++.      .+|+++++. +|.+....++....|
T Consensus       107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~g  140 (202)
T PRK13190        107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETG  140 (202)
T ss_pred             CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCC
Confidence            553      479999995 788887776665555

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=86.09  E-value=3.2  Score=40.72  Aligned_cols=57  Identities=14%  Similarity=0.056  Sum_probs=44.4

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCC---CCCCCCCCCCcEEEEEE-CCEEE-eEEeC
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTT---CIPNYPDKNLPTLFIYF-EGKMQ-SQMVG  213 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~---~~~~y~v~~LPTllvYk-~G~~v-~~lvG  213 (228)
                      |+.|.-+...|+++|.--+.+++...+..+   ..+.|++..+|++.+++ +|+-. =+|.|
T Consensus       378 ~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g  439 (555)
T TIGR03143       378 NEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHG  439 (555)
T ss_pred             chhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEe
Confidence            679999999999999988988887666432   45889999999999995 66432 33444

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=84.77  E-value=3.3  Score=31.34  Aligned_cols=63  Identities=16%  Similarity=0.090  Sum_probs=40.5

Q ss_pred             hHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEE
Q psy14385        138 TYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIY  202 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvY  202 (228)
                      ++++.+.+.+   .|||+-        ||.|..+...|..+     ++.|..++....       ....+...+|.+  |
T Consensus         3 ~~v~~~i~~~---~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--f   72 (97)
T TIGR00365         3 ERIKEQIKEN---PVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--Y   72 (97)
T ss_pred             HHHHHHhccC---CEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--E
Confidence            4455554443   466663        99999999999875     345666666542       123456788987  5


Q ss_pred             ECCEEEeE
Q psy14385        203 FEGKMQSQ  210 (228)
Q Consensus       203 k~G~~v~~  210 (228)
                      .+|+.++.
T Consensus        73 i~g~~iGG   80 (97)
T TIGR00365        73 VKGEFVGG   80 (97)
T ss_pred             ECCEEEeC
Confidence            78876643

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=84.36  E-value=8  Score=34.86  Aligned_cols=70  Identities=13%  Similarity=0.036  Sum_probs=50.8

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC-------------------------------CCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC-------------------------------IPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~-------------------------------~~~  190 (228)
                      +.+||++|     |+.|..-.+.|.++..+|  .+++++-|..+..                               +..
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka  177 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS  177 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence            35788887     999999999999998888  3567766655430                               134


Q ss_pred             CCCC-----CCcEEEEEE-CCEEEeEEeCccccC
Q psy14385        191 YPDK-----NLPTLFIYF-EGKMQSQMVGPDEFR  218 (228)
Q Consensus       191 y~v~-----~LPTllvYk-~G~~v~~lvG~~~~G  218 (228)
                      |++.     .+|+.++.. +|.++...+.....|
T Consensus       178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~g  211 (261)
T PTZ00137        178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLG  211 (261)
T ss_pred             cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCC
Confidence            5553     479999986 899998887655555

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=84.33  E-value=2.1  Score=31.76  Aligned_cols=52  Identities=19%  Similarity=0.161  Sum_probs=34.8

Q ss_pred             eEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        151 WVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       151 ~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      .|||+-        |+.|..+...|..+-     +.|..++...-       ....+...+|++  |.+|+.++
T Consensus         9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iG   75 (90)
T cd03028           9 PVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVG   75 (90)
T ss_pred             CEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence            566663        889999888887764     45555555431       233567789997  56887653

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=84.29  E-value=0.94  Score=36.60  Aligned_cols=51  Identities=20%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhCC-CcEEEEEeCCCCCCCCCCCCCcEEEEEECCEE-EeEEeC
Q psy14385        162 LINNHLSELAAKFP-TTKFIKSISTTCIPNYPDKNLPTLFIYFEGKM-QSQMVG  213 (228)
Q Consensus       162 ~l~~~L~~LA~kyp-~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~-v~~lvG  213 (228)
                      .+...+.++|+++. ++.|+.+........+++.. |++++||++.. ...+.|
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~   59 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDG   59 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESS
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceeccc
Confidence            35678999999997 79999988766667789888 99999999543 334444

...

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=83.95  E-value=3.3  Score=32.12  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=52.0

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe-ccchHHHHHHHHHHHHh---CC-CcEEEEEeCCCC---CCCCCCCC--CcEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF-IPLCSLINNHLSELAAK---FP-TTKFIKSISTTC---IPNYPDKN--LPTLF  200 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf-~~~C~~l~~~L~~LA~k---yp-~~KFvkI~ad~~---~~~y~v~~--LPTll  200 (228)
                      |++++.+.+..... .+ -...++.| -..-..+...+..+|++   |. .+.|+-+|++..   ...|++..  +|++.
T Consensus         1 ~~e~t~e~~~~~~~-~~-~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~   78 (111)
T cd03072           1 VREITFENAEELTE-EG-LPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA   78 (111)
T ss_pred             CcccccccHHHHhc-CC-CCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence            56788888764443 32 12234444 44457799999999999   95 599999999873   46777765  99998


Q ss_pred             EEECC
Q psy14385        201 IYFEG  205 (228)
Q Consensus       201 vYk~G  205 (228)
                      +....
T Consensus        79 i~~~~   83 (111)
T cd03072          79 IDSFR   83 (111)
T ss_pred             EEcch
Confidence            88764

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=82.81  E-value=3  Score=28.93  Aligned_cols=46  Identities=11%  Similarity=0.180  Sum_probs=31.6

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCC-CCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDK-NLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~-~LPTllvYk~G~~v~  209 (228)
                      |+.|......|..+     ++.|..++.+..       ...++.. .+|++  |-+|+.++
T Consensus        10 Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ig   63 (75)
T cd03418          10 CPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIG   63 (75)
T ss_pred             ChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEe
Confidence            99999999999874     456655666542       1234555 89977  57887654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=82.64  E-value=4.5  Score=28.15  Aligned_cols=46  Identities=15%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+.|......|.+.     ++.|..++.+...      ...+...+|.+  |.+|+.++
T Consensus        11 Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig   62 (72)
T cd03029          11 CPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG   62 (72)
T ss_pred             CHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe
Confidence            99999999999863     4566666665422      22477899997  67887653

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=82.54  E-value=5.3  Score=33.99  Aligned_cols=69  Identities=19%  Similarity=0.263  Sum_probs=48.3

Q ss_pred             ceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------------CCCCC
Q psy14385        150 IWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------------IPNYP  192 (228)
Q Consensus       150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------------~~~y~  192 (228)
                      .|||+.|     |+.|..-.+.|.+++.+|.  +++++-|..+..                              ...|+
T Consensus        26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg  105 (203)
T cd03016          26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG  105 (203)
T ss_pred             CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence            4666644     9999999999999999984  588887765530                              12355


Q ss_pred             CC----CCc----EEEEE-ECCEEEeEEeCccccC
Q psy14385        193 DK----NLP----TLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       193 v~----~LP----TllvY-k~G~~v~~lvG~~~~G  218 (228)
                      +.    +.|    +.+|+ .+|.+....+|....|
T Consensus       106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~g  140 (203)
T cd03016         106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTG  140 (203)
T ss_pred             CccccCCCCceeeEEEEECCCCeEEEEEecCCCCC
Confidence            43    234    45555 6899999988876655

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=80.97  E-value=1.6  Score=26.41  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=17.0

Q ss_pred             cChhcHHHHHHHHHHHHHHHHH
Q psy14385        100 EDEEDERVLQEYRRKRIAEMKA  121 (228)
Q Consensus       100 edeeDd~~Le~yR~kRl~ELk~  121 (228)
                      +||++|+.-++.|++|+++...
T Consensus         5 ddEeed~ea~r~reeRla~y~a   26 (28)
T PF10587_consen    5 DDEEEDEEAERIREERLAAYAA   26 (28)
T ss_pred             ccccccHHHHHHHHHHHHHHHc
Confidence            3445677889999999998653

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=80.84  E-value=5.5  Score=29.98  Aligned_cols=73  Identities=19%  Similarity=0.097  Sum_probs=47.0

Q ss_pred             eEEeC-hhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385        131 VLEIN-GDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       131 V~eIs-~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~~y~v~~LPTllvYk~G  205 (228)
                      +.+|+ .++...-+.... ...||-.|-..-......|..+|..+ .+..|.-.........+++ ..|++.+|++.
T Consensus         2 v~~i~~~~~~e~~~~~~~-~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~~~~i~l~~~~   76 (102)
T cd03066           2 VEIINSERELQAFENIED-DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGL-KMNEVDFYEPF   76 (102)
T ss_pred             ceEcCCHHHHHHHhcccC-CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCC-CCCcEEEeCCC
Confidence            46774 444544443032 35566666222225778899999999 8899976655555566665 47999999873

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=80.67  E-value=2.5  Score=29.89  Aligned_cols=46  Identities=13%  Similarity=0.245  Sum_probs=31.0

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      ||.|......|.++.     +.|-.++.+..       ....+...+|++  |-+|+.++
T Consensus         9 Cp~C~~a~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig   61 (79)
T TIGR02181         9 CPYCTRAKALLSSKG-----VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG   61 (79)
T ss_pred             ChhHHHHHHHHHHcC-----CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence            999999999998653     44444454432       123467899997  56887553

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
3evi_A	118	Crystal Structure Of The Thioredoxin-Fold Domain Of		3e-22
2dbc_A	135	Solution Structure Of The Thioredoxin-Like Domain O		5e-21
1a0r_P	245	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		6e-06
1b9x_C	246	Structural Analysis Of Phosducin And Its Phosphoryl		1e-04
1b9y_C	246	Structural Analysis Of Phosducin And Its Phosphoryl		1e-04

>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human Phosducin- Like Protein 2 Length = 118

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 65/91 (71%), Gaps = 4/91 (4%)
Query: 127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS 182
           +FG + EI+G+ YV EV NA E +WV++H     IP+C L+N HLS LA KFP TKF+K+
Sbjct: 1   KFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA 60
Query: 183 ISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
           I  +CI +Y D  LPT+F+Y  G+++++ +G
Sbjct: 61  IVNSCIQHYHDNCLPTIFVYKNGQIEAKFIG 91

>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of Phosducin-Like Protein 2(Pdcl2) Length = 135

Iteration: 1
 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Query: 127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS 182
           +FG + EI+G+ YV EV NA + +WVV+H     +P+C ++N HLS LA KFP TKF+K+
Sbjct: 8   KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKA 67
Query: 183 ISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
           I  +CI +Y D  LPT+F+Y  G+++ + +G
Sbjct: 68  IVNSCIEHYHDNCLPTIFVYKNGQIEGKFIG 98

>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 245

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 107 VLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLC 160
            L++YRR+ + +M + ++   R+G V E+ +G+ +++ +    +   +V+H     I  C
Sbjct: 89  CLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGC 148
Query: 161 SLINNHLSELAAKFPTTKF--IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
             +N+ L  LAA++P  KF  IK+ +T     +    LPTL +Y  G++ S  +
Sbjct: 149 DALNSSLICLAAEYPMVKFCKIKASNTGAGDRFSSDVLPTLLVYKGGELLSNFI 202

>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation- Regulated Interaction With Transducin Length = 246

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 107 VLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLC 160
            L++YRR+ + +M + ++   R+G V E+  G+ +++ +    +   +V++     +  C
Sbjct: 89  CLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGC 148
Query: 161 SLINNHLSELAAKFPTTKF--IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
             +N+ L  LAA++P  KF  I++ +T     +    LPTL +Y  G++ S  +
Sbjct: 149 DALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFI 202

>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation- Regulated Interaction With Transducin Beta-Gamma Length = 246

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 107 VLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLC 160
            L++YRR+ + +M + ++   R+G V E+  G+ +++ +    +   +V++     +  C
Sbjct: 89  CLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGC 148
Query: 161 SLINNHLSELAAKFPTTKF--IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
             +N+ L  LAA++P  KF  I++ +T     +    LPTL +Y  G++ S  +
Sbjct: 149 DALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFI 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	5e-38
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	4e-31
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	2e-28
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	4e-28
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	5e-05
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	1e-04
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	4e-04
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	5e-04

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score =  130 bits (329), Expect = 5e-38
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 8/181 (4%)

Query: 45  TQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEED 104
             W                  E        Q+  +K  K          +     +D+ED
Sbjct: 14  NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKED 73

Query: 105 ERVLQEYRRKRIAEMK-AMAEKSRFGRVLEIN-GDTYVQEVNNAGEGIWVVLHF----IP 158
           E  L++YRR+ + +M   ++   R+G V E+  G+ +++ +    +   +V++     + 
Sbjct: 74  EGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVR 133

Query: 159 LCSLINNHLSELAAKFPTTKFIK--SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
            C  +N+ L  LAA++P  KF K  + +T     +    LPTL +Y  G++ S  +   E
Sbjct: 134 GCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAE 193

Query: 217 F 217
            
Sbjct: 194 Q 194

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score =  113 bits (284), Expect = 4e-31
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 74  EQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAEMK-AMAEKSRFGRVL 132
            Q+  +K  K          +     +D+EDE  L++YRR+ + +M   ++   R+G V 
Sbjct: 56  PQSRDDKDSKERFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVY 115

Query: 133 EIN-GDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIK--SIST 185
           E+  G+ +++ +    +   +V+H     I  C  +N+ L  LAA++P  KF K  + +T
Sbjct: 116 ELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNT 175

Query: 186 TCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217
                +    LPTL +Y  G++ S  +   E 
Sbjct: 176 GAGDRFSSDVLPTLLVYKGGELLSNFISVTEQ 207

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score =  103 bits (258), Expect = 2e-28
 Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 4/101 (3%)

Query: 121 AMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT 176
           +     +FG + EI+G+ YV EV NA + +WVV+H     +P+C ++N HLS LA KFP 
Sbjct: 2   SSGSSGKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE 61

Query: 177 TKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217
           TKF+K+I  +CI +Y D  LPT+F+Y  G+++ + +G  E 
Sbjct: 62  TKFVKAIVNSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIEC 102

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score =  102 bits (255), Expect = 4e-28
 Identities = 45/95 (47%), Positives = 66/95 (69%), Gaps = 4/95 (4%)

Query: 127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS 182
           +FG + EI+G+ YV EV NA E +WV++H     IP+C L+N HLS LA KFP TKF+K+
Sbjct: 1   KFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA 60

Query: 183 ISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217
           I  +CI +Y D  LPT+F+Y  G+++++ +G  E 
Sbjct: 61  IVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIEC 95

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 129 GRVLEINGDTYVQEVNNAGEGIWVVLHFI-----PLCSLINNHLSELAAKFPTTKFIKSI 183
           G+V E+N DT+   V  AG+   VVL        P    +     +LA ++    F+K  
Sbjct: 5   GKVTEVNKDTFWPIVKAAGDKP-VVLDMFTQWCGP-SKAMAPKYEKLAEEYLDVIFLKLD 62

Query: 184 STTCIPNYPDK----NLPTLFIYFEGKMQSQMVG 213
                     +     +PT  I  E  +  ++ G
Sbjct: 63  CNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 96

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 117 AEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFI-----PLCSLINNHLSELA 171
            EM+A+      G+V E+N DT+   V  AG+   VVL        P C  +     +LA
Sbjct: 11  QEMEAIV-----GKVTEVNKDTFWPIVKAAGDKP-VVLDMFTQWCGP-CKAMAPKYEKLA 63

Query: 172 AKFPTTKFIKSISTTCIPNYPDK----NLPTLFIYFEGKMQSQMVG 213
            ++    F+K            +     +PT  I  E  +  ++ G
Sbjct: 64  EEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 109

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 19/111 (17%)

Query: 119 MKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAK 173
           M+        G V +I   T  QE  +A     VV+ F      P   +I      L+ K
Sbjct: 1   MRGSHHHHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGP-SKMIKPFFHSLSEK 59

Query: 174 FPTTKFIK-------SISTTC-IPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
           +    F++        +++ C +     K++PT   + +G+   +  G ++
Sbjct: 60  YSNVIFLEVDVDDCQDVASECEV-----KSMPTFQFFKKGQKVGEFSGANK 105

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 17/110 (15%)

Query: 119 MKAMAEKSRFGRVLEINGDT-YVQEVNNAGEGIWVVLHFI----PLCSLINNHLSELAAK 173
           M A A ++    V E+     + + +    + + +V+HF     P C+ +N  ++ELA +
Sbjct: 2   MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSL-LVVHFWAPWAPQCAQMNEVMAELAKE 60

Query: 174 FPTTKFIK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
            P   F+K        +S      Y   ++PT   +   +   ++ G   
Sbjct: 61  LPQVSFVKLEAEGVPEVSEK----YEISSVPTFLFFKNSQKIDRLDGAHA 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.97
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.96
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.92
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.8
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.7
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.66
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.65
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.64
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.63
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.53
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.5
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.49
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.48
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.48
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.47
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.47
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.46
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.46
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.45
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.45
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.45
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.44
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.44
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.44
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.43
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.43
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.43
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.42
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.42
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.42
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.42
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.41
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.41
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.41
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.41
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.41
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.41
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.4
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.4
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.4
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.39
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.39
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.39
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.39
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.39
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.38
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.38
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.38
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.38
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.37
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.37
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.37
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.37
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.36
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.36
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.34
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.34
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.33
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.32
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.31
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.31
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.3
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.29
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.29
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.28
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.28
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.25
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.24
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.24
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.24
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.23
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.22
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.22
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.18
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.18
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.8
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.14
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.14
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.14
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.12
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.11
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.08
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.05
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.04
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.03
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.0
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.99
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.98
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.96
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.96
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.92
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.91
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.9
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.89
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.88
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.88
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	98.87
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.81
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.8
2kuc_A	130	Putative disulphide-isomerase; structural genomics	98.8
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.8
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.79
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.77
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.73
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.73
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.73
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.72
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.71
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.71
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.7
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.7
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.69
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.68
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.11
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.65
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	98.65
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.62
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.59
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.55
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.55
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.54
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.54
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.54
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.53
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.53
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.53
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.53
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.52
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.52
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.51
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.51
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.48
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.46
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.45
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.44
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.44
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.43
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.42
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.41
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.4
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.38
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.38
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.37
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.36
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.36
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.32
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.31
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.3
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.29
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.27
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.24
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.24
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.22
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.19
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.18
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.18
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.17
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.16
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.42
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.12
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.11
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.08
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.05
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.04
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.04
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.04
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.03
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.01
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.01
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.2
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	97.93
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	97.88
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	97.84
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	97.8
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	97.74
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	97.72
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.71
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	97.7
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.67
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	97.66
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	97.66
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	97.64
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.61
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	97.61
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	97.6
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	97.58
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	97.56
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.55
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.51
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.51
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.47
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.41
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.39
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.37
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.35
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	97.33
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.33
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.32
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.31
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.25
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.19
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	97.1
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.05
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	96.95
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	96.94
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	96.93
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	96.88
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	96.87
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	96.79
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	96.73
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	96.69
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	96.67
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	96.6
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	96.56
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.39
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	96.36
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	96.36
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	96.35
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.33
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.3
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.21
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	96.21
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	96.06
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	95.82
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	95.81
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	95.74
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	95.73
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	95.73
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	95.72
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	95.65
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	95.59
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	95.52
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	95.42
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	95.38
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	95.37
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	95.33
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	95.18
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	95.09
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	95.09
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	95.04
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	95.03
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	94.94
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	94.82
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	94.78
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	94.73
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	94.7
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	94.67
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	93.98
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	93.84
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	93.79
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	93.79
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	93.75
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	93.49
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	93.41
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	93.32
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	93.25
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	92.65
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	92.47
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	92.33
1yyb_A	27	Programmed cell death protein 5; PDCD5(1-26), solu	92.18
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	92.16
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	91.83
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	91.62
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	91.35
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	90.99
3me7_A	170	Putative uncharacterized protein; electron transfe	90.17
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	89.31
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	89.19
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	88.77
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	88.45
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	88.05
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	87.78
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	86.94
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	86.56
1z6m_A	175	Conserved hypothetical protein; structural genomic	86.4
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	86.38
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	86.3
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	85.54
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	85.28
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	85.18
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	85.15
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	84.56
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	84.46
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	84.14
3fhk_A	147	UPF0403 protein YPHP; disulfide isomerase, thiored	83.27
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	82.18
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	81.56
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	80.5
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	80.07

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.97  E-value=1e-29  Score=222.88  Aligned_cols=144  Identities=26%  Similarity=0.467  Sum_probs=126.6

Q ss_pred             hchhhccCCChhHHhhcc-ChhcHHHHHHHHHHHHHHHHHHHh-ccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe---
Q psy14385         83 KGEKELGDMDLDDLDELE-DEEDERVLQEYRRKRIAEMKAMAE-KSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF---  156 (228)
Q Consensus        83 ~~~~~~e~~~ldeL~ele-deeDd~~Le~yR~kRl~ELk~~~~-~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf---  156 (228)
                      .+.+.+++|++|||++++ |++|++||++||++||+||++... .+.||.|++| +.++|...|.+++++.+|||||   
T Consensus        64 ~~~~~~~~~~~~e~~~~~~d~eDe~fL~~~r~~Rl~el~~~~~~~~~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~  143 (245)
T 1a0r_P           64 SKERFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYED  143 (245)
T ss_dssp             ----CCCCSCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECT
T ss_pred             cchhhhccCChhhhhhcccccccHHHHHHHHHHHHHHHHHHhhccCCCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence            345678899999999997 678999999999999999998764 5689999999 7899999998765568999999   


Q ss_pred             -ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCccccC-CCCCcccc
Q psy14385        157 -IPLCSLINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDAN  226 (228)
Q Consensus       157 -~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~  226 (228)
                       |++|+.|.++|..||++|++++|++|+++.  ++.+|++.++||+++|++|+.+++++|+..++ .+++.+++
T Consensus       144 wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~~~l~~~~~I~~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~L  217 (245)
T 1a0r_P          144 GIKGCDALNSSLICLAAEYPMVKFCKIKASNTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDV  217 (245)
T ss_dssp             TSTTHHHHHHHHHHHHHHCTTSEEEEEEHHHHCCTTSSCTTTCSEEEEEETTEEEEEETTGGGGSCTTCCHHHH
T ss_pred             CChHHHHHHHHHHHHHHHCCCCEEEEEeCCcHHHHHHCCCCCCCEEEEEECCEEEEEEeCCcccccccccHHHH
Confidence             999999999999999999999999999986  67899999999999999999999999999875 77776553

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.96  E-value=4.4e-29  Score=214.03  Aligned_cols=143  Identities=24%  Similarity=0.456  Sum_probs=128.8

Q ss_pred             chhhccCCChhHHhhcc-ChhcHHHHHHHHHHHHHHHHHHH-hccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe----
Q psy14385         84 GEKELGDMDLDDLDELE-DEEDERVLQEYRRKRIAEMKAMA-EKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----  156 (228)
Q Consensus        84 ~~~~~e~~~ldeL~ele-deeDd~~Le~yR~kRl~ELk~~~-~~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf----  156 (228)
                      ..+.+++|++|||++++ |++|++||++||++||+||++.. ..+.||.|++| +.++|...|.+++++.+|||||    
T Consensus        52 ~~~~~~~~~~~e~~~~~~d~~d~~fl~~~r~~Rl~el~~~~~~~~~~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~w  131 (217)
T 2trc_P           52 KERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDG  131 (217)
T ss_dssp             SSCCCCSSCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             hhhhhccCChhhhhhhccccccHHHHHHHHHHHHHHHHHHHHhccCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            45678899999999987 77899999999999999999865 35689999999 8899999998776667999999    


Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCccccC-CCCCcccc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDAN  226 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~  226 (228)
                      |++|+.|.++|..||.+|+.++|++|+++.  ++.+|++.++||+++|++|+.+.+++|+...| ++|+.+++
T Consensus       132 C~~C~~l~p~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~L  204 (217)
T 2trc_P          132 VRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADV  204 (217)
T ss_dssp             STTHHHHHHHHHHHHTTCTTSEEEEEEHHHHTCSTTSCGGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCeEEEEEECCcHHHHHHCCCCCCCEEEEEECCEEEEEEeCCcccCcccCCHHHH
Confidence            999999999999999999999999999973  56899999999999999999999999999876 88887654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.2e-25  Score=174.71  Aligned_cols=100  Identities=47%  Similarity=0.921  Sum_probs=94.7

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEE
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIY  202 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvY  202 (228)
                      +||.|++|+.++|.++|.+++++++|||||    |++|+.|+++|++||++||+++|++||+++++.+|+++++||+++|
T Consensus         1 ~~G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~~~~~~v~~~PT~~~f   80 (118)
T 3evi_A            1 KFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVY   80 (118)
T ss_dssp             CCCSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGTSTTCCGGGCSEEEEE
T ss_pred             CCcceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHhHHHCCCCCCCEEEEE
Confidence            699999999999999998876566999999    9999999999999999999999999999999999999999999999


Q ss_pred             ECCEEEeEEeCccccC-CCCCcccc
Q psy14385        203 FEGKMQSQMVGPDEFR-TNLSCDAN  226 (228)
Q Consensus       203 k~G~~v~~lvG~~~~G-~~~t~e~~  226 (228)
                      ++|+.+++++|+..+| +++|.++.
T Consensus        81 k~G~~v~~~~G~~~~gg~~~~~~~l  105 (118)
T 3evi_A           81 KNGQIEAKFIGIIECGGINLKLEEL  105 (118)
T ss_dssp             ETTEEEEEEESTTTTTCSSCCHHHH
T ss_pred             ECCEEEEEEeChhhhCCCCCCHHHH
Confidence            9999999999999998 99988764

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=1.3e-19  Score=142.60  Aligned_cols=102  Identities=44%  Similarity=0.897  Sum_probs=93.6

Q ss_pred             hccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEE
Q psy14385        124 EKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTL  199 (228)
Q Consensus       124 ~~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTl  199 (228)
                      .+++||.|.+|+.++|.+.|.+++++.+|||+|    |++|+.|.+.|.+||.+|++++|++|+++.+..+|++.++||+
T Consensus         5 ~~~~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~~~~~i~~~Pt~   84 (135)
T 2dbc_A            5 SSGKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCIEHYHDNCLPTI   84 (135)
T ss_dssp             CCCCCCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSCSSCCSSCCSEE
T ss_pred             ccCCCCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCcccCCCCCCCEE
Confidence            457899999999999999998776567899999    9999999999999999999999999999999999999999999


Q ss_pred             EEEECCEEEeEEeCccccC-CCCCccc
Q psy14385        200 FIYFEGKMQSQMVGPDEFR-TNLSCDA  225 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~~G-~~~t~e~  225 (228)
                      ++|++|+.+.+++|+.++| .+++.++
T Consensus        85 ~~~~~G~~v~~~~G~~~~~~~~~~~~~  111 (135)
T 2dbc_A           85 FVYKNGQIEGKFIGIIECGGINLKLEE  111 (135)
T ss_dssp             EEESSSSCSEEEESTTTTTCTTCCHHH
T ss_pred             EEEECCEEEEEEEeEEeeCCCcCCHHH
Confidence            9999999999999999887 6666554

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.70  E-value=9.3e-17  Score=122.24  Aligned_cols=84  Identities=23%  Similarity=0.479  Sum_probs=76.2

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |++| +.++|.+.+.+++ +.+|||+|    |++|+.|.|.|+++|..|+++.|++||+++.   +..|+++++||+++|
T Consensus         2 V~~i~~~~~f~~~l~~~~-~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~   80 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAG-NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFM   80 (105)
T ss_dssp             CEECCSHHHHHHHHHHTT-TSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             eEEeCCHHHHHHHHHhcC-CCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEE
Confidence            5678 6689999998764 57899999    9999999999999999999999999999985   589999999999999


Q ss_pred             ECCEEEeEEeCcc
Q psy14385        203 FEGKMQSQMVGPD  215 (228)
Q Consensus       203 k~G~~v~~lvG~~  215 (228)
                      ++|+.+++++|..
T Consensus        81 ~~G~~v~~~~G~~   93 (105)
T 3zzx_A           81 KNGQKLDSLSGAN   93 (105)
T ss_dssp             ETTEEEEEEESCC
T ss_pred             ECCEEEEEEeCcC
Confidence            9999999999964

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.66  E-value=1.8e-16  Score=123.78  Aligned_cols=107  Identities=21%  Similarity=0.330  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHh-ccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEE
Q psy14385        107 VLQEYRRKRIAEMKAMAE-KSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFI  180 (228)
Q Consensus       107 ~Le~yR~kRl~ELk~~~~-~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFv  180 (228)
                      .+.++|++|+++++.... +..+|.|.+++.++|...+.+++  . |||+|    |++|+.+.+.|++++.+|+ +++|+
T Consensus        10 ~~~~~~~~r~~~~~~~~~c~~~~~~v~~l~~~~~~~~~~~~~--~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~   86 (140)
T 1v98_A           10 AKNRLGTPPPGQVPVCGACKTPLPWVVEADEKGFAQEVAGAP--L-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVV   86 (140)
T ss_dssp             ---------------------------------------CCC--E-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred             ccccCCcccccCCcccccccCCCCccccCCHHHHHHHHHcCC--C-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEE
Confidence            478999999999987766 56789999999999999887653  4 78888    9999999999999999998 69999


Q ss_pred             EEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCccc
Q psy14385        181 KSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       181 kI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~~  216 (228)
                      +|+++..   ..+|++.++||+++|++|+.+.++.|...
T Consensus        87 ~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~  125 (140)
T 1v98_A           87 KVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGASP  125 (140)
T ss_dssp             EEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEEESCCC
T ss_pred             EEECCCCHHHHHHCCCCccCEEEEEeCCcEEEEEeCCCC
Confidence            9999985   36899999999999999999999999753

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.65  E-value=3.8e-16  Score=126.16  Aligned_cols=87  Identities=16%  Similarity=0.207  Sum_probs=76.2

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----c--cchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----I--PLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~--~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      +|-. .|+.++|.+.|.+++  .+|||+|    |  ++|+.|.|+|++||++|. .++|+|||+++.   +.+|+|+++|
T Consensus        15 ~g~~-~vt~~~F~~~v~~~~--~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siP   91 (137)
T 2qsi_A           15 NAPT-LVDEATVDDFIAHSG--KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCP   91 (137)
T ss_dssp             --CE-EECTTTHHHHHHTSS--SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSS
T ss_pred             cCCc-ccCHhHHHHHHhcCC--CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCC
Confidence            4444 889999999997553  4899999    7  999999999999999995 699999999984   5899999999


Q ss_pred             EEEEEECCEEEeEEeCcccc
Q psy14385        198 TLFIYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~~~  217 (228)
                      ||++||||+.+++++|+...
T Consensus        92 TlilFkdG~~v~~~vG~~~k  111 (137)
T 2qsi_A           92 SLAVVQPERTLGVIAKIQDW  111 (137)
T ss_dssp             EEEEEECCEEEEEEESCCCH
T ss_pred             EEEEEECCEEEEEEeCCCCH
Confidence            99999999999999998753

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.64  E-value=2.5e-16  Score=127.69  Aligned_cols=85  Identities=12%  Similarity=0.096  Sum_probs=74.5

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCC-C-cEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFP-T-TKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp-~-~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      .+..++.++|.+.|. ++  .+|||+|      |++|+.|.|+|++||++|+ . ++|+|||+++.   +.+|+|+++||
T Consensus        18 g~~~~t~~~F~~~v~-~~--~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPT   94 (140)
T 2qgv_A           18 GWTPVSESRLDDWLT-QA--PDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPA   94 (140)
T ss_dssp             TCEECCHHHHHHHHH-TC--SSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSE
T ss_pred             CCccCCHHHHHHHHh-CC--CCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCE
Confidence            355899999999995 32  4788888      7888899999999999996 5 89999999974   58999999999


Q ss_pred             EEEEECCEEEeEEeCcccc
Q psy14385        199 LFIYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       199 llvYk~G~~v~~lvG~~~~  217 (228)
                      |++||||+.+++++|+...
T Consensus        95 lilFk~G~~v~~~~G~~~k  113 (140)
T 2qgv_A           95 TLVFTGGNYRGVLNGIHPW  113 (140)
T ss_dssp             EEEEETTEEEEEEESCCCH
T ss_pred             EEEEECCEEEEEEecCCCH
Confidence            9999999999999998653

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.63  E-value=1.1e-15  Score=126.38  Aligned_cols=85  Identities=15%  Similarity=0.189  Sum_probs=74.5

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      |..| +.++|.++|.+.+ +.+|||+|    |+||+.|+|+|++||.+|++ ++|+++|+++.   +..|.++++|||++
T Consensus        23 v~~l~t~~~f~~~v~~~~-~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~f  101 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNED-ERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMF  101 (160)
T ss_dssp             CEECCSHHHHHHHHHHCS-SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEE
T ss_pred             hhccCCHHHHHHHHHhcC-CCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEE
Confidence            5678 6789999987533 36899999    99999999999999999975 99999999985   58999999999999


Q ss_pred             EECCEEE--e-------EEeCccc
Q psy14385        202 YFEGKMQ--S-------QMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v--~-------~lvG~~~  216 (228)
                      |++|+.+  +       +++|+.+
T Consensus       102 Fk~G~~v~vd~Gtgd~~k~vGa~~  125 (160)
T 2av4_A          102 FYRNKHMMIDLGTGNNNKINWPMN  125 (160)
T ss_dssp             EETTEEEEEECSSSCCSCBCSCCC
T ss_pred             EECCEEEEEecCCCCcCeEEeecC
Confidence            9999998  5       8888743

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.53  E-value=9.8e-14  Score=102.78  Aligned_cols=85  Identities=20%  Similarity=0.319  Sum_probs=74.4

Q ss_pred             ceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|.+| +.++|.+.+.++ ++.+|||+|    |++|+.+.+.|.++|++|+++.|+++|++..   ...|++.++||+++
T Consensus         2 ~v~~i~~~~~~~~~~~~~-~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   80 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSGA-GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQF   80 (107)
T ss_dssp             CEEEECSGGGHHHHHHHT-TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred             ceEEecCHHHHHHHHHhC-CCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEE
Confidence            46788 678888888653 246788888    9999999999999999999999999999975   47899999999999


Q ss_pred             EECCEEEeEEeCcc
Q psy14385        202 YFEGKMQSQMVGPD  215 (228)
Q Consensus       202 Yk~G~~v~~lvG~~  215 (228)
                      |++|+.+.++.|..
T Consensus        81 ~~~G~~~~~~~G~~   94 (107)
T 1gh2_A           81 FRNKVRIDQYQGAD   94 (107)
T ss_dssp             EETTEEEEEEESSC
T ss_pred             EECCeEEEEEeCCC
Confidence            99999999999964

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.50  E-value=5.9e-14  Score=104.65  Aligned_cols=88  Identities=24%  Similarity=0.293  Sum_probs=77.9

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC-C---CCCCCCCCCCcE
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST-T---CIPNYPDKNLPT  198 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad-~---~~~~y~v~~LPT  198 (228)
                      ..|.|..++.++|.+.+.+.+ +.+|||+|    |++|+.+.+.|.+++.+|+++.|++++.+ .   ....|++.++||
T Consensus         3 ~~~~v~~l~~~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt   81 (111)
T 2pu9_C            3 IVGKVTEVNKDTFWPIVKAAG-DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT   81 (111)
T ss_dssp             CTTSEEEECTTTHHHHHTTCT-TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSSE
T ss_pred             CcCccEEechHHHHHHHHhcC-CCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeeeE
Confidence            368899999999999887533 46788888    99999999999999999999999999998 3   247899999999


Q ss_pred             EEEEECCEEEeEEeCcc
Q psy14385        199 LFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       199 llvYk~G~~v~~lvG~~  215 (228)
                      +++|++|+.+.++.|..
T Consensus        82 ~~~~~~G~~~~~~~G~~   98 (111)
T 2pu9_C           82 FKILKENSVVGEVTGAK   98 (111)
T ss_dssp             EEEESSSSEEEEEESSC
T ss_pred             EEEEeCCcEEEEEcCCC
Confidence            99999999999999974

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.6e-13  Score=102.26  Aligned_cols=86  Identities=17%  Similarity=0.336  Sum_probs=72.5

Q ss_pred             ceEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHh--CCCcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        130 RVLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAK--FPTTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       130 ~V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~k--yp~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      .|.+|+. ++|.+.+.+++.+.+|||+|    |++|+.+.+.|.+++.+  ++++.|++++.+..   ...|++.++||+
T Consensus         1 ~v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             CEEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            3678876 88888886423356888888    99999999999999999  78899999999874   478999999999


Q ss_pred             EEEECCEEEeEEeCcc
Q psy14385        200 FIYFEGKMQSQMVGPD  215 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~  215 (228)
                      ++|++|+.+.++.|..
T Consensus        81 ~~~~~G~~~~~~~G~~   96 (112)
T 3d6i_A           81 IIIHKGTILKELSGAD   96 (112)
T ss_dssp             EEEETTEEEEEECSCC
T ss_pred             EEEECCEEEEEecCCC
Confidence            9999999999999974

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.48  E-value=2.9e-13  Score=99.95  Aligned_cols=86  Identities=17%  Similarity=0.333  Sum_probs=76.3

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      ..|.+++.++|...+.+.+  .+|||+|    |++|+.+.+.|.+++++|++ +.|++++.+..   ...|++.++||++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~--~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEG--KACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSC--CCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CcceecCHHHHHHHHHhcC--CEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            4688999999999995443  5788888    99999999999999999985 99999999985   4789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+.++.|...
T Consensus        82 ~~~~g~~~~~~~g~~~   97 (111)
T 3gnj_A           82 YFKDGEYKGKMAGDVE   97 (111)
T ss_dssp             EEETTEEEEEEESSCC
T ss_pred             EEECCEEEEEEeccCC
Confidence            9999999999999753

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.48  E-value=1.9e-13  Score=103.76  Aligned_cols=89  Identities=25%  Similarity=0.337  Sum_probs=78.5

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC----CCCCCCCCCCc
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT----CIPNYPDKNLP  197 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~----~~~~y~v~~LP  197 (228)
                      ...|.+..++.++|...+...+ +.+|||+|    |++|+.+.+.|.+++++|+++.|++++.+.    ....|++.++|
T Consensus        15 ~~~~~v~~l~~~~~~~~~~~~~-~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~P   93 (124)
T 1faa_A           15 AIVGKVTEVNKDTFWPIVKAAG-DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVP   93 (124)
T ss_dssp             TTTTSEEEECTTTHHHHHHHTT-TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             hcCCceEEecchhHHHHHHhcC-CCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeee
Confidence            4568899999999999887533 46788888    999999999999999999999999999973    24789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+.+.++.|..
T Consensus        94 t~~~~~~G~~~~~~~G~~  111 (124)
T 1faa_A           94 TFKILKENSVVGEVTGAK  111 (124)
T ss_dssp             EEEEEETTEEEEEEESSC
T ss_pred             EEEEEeCCcEEEEEcCCC
Confidence            999999999999999975

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.47  E-value=2.9e-13  Score=99.06  Aligned_cols=83  Identities=20%  Similarity=0.426  Sum_probs=72.9

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |.+| +.++|...+..+ ++.+|||+|    |++|+.+.+.|.+++.+|+++.|++++.+..   ...|++.++||+++|
T Consensus         2 v~~i~~~~~~~~~l~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   80 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAA-GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFF   80 (105)
T ss_dssp             CEECCSHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             eEEcCCHHHHHHHHHhc-CCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEEE
Confidence            4567 567777777654 346888888    9999999999999999999999999999975   478999999999999


Q ss_pred             ECCEEEeEEeCc
Q psy14385        203 FEGKMQSQMVGP  214 (228)
Q Consensus       203 k~G~~v~~lvG~  214 (228)
                      ++|+.+.++.|.
T Consensus        81 ~~g~~~~~~~g~   92 (105)
T 3m9j_A           81 KKGQKVGEFSGA   92 (105)
T ss_dssp             ETTEEEEEEESS
T ss_pred             ECCeEEEEEeCC
Confidence            999999999997

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.47  E-value=3.1e-13  Score=104.12  Aligned_cols=90  Identities=26%  Similarity=0.472  Sum_probs=78.8

Q ss_pred             ccCCCceEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCC
Q psy14385        125 KSRFGRVLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKN  195 (228)
Q Consensus       125 ~~~fG~V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~  195 (228)
                      ....|.|.+| +.++|...+..+. ++.+|||+|    |++|+.+.+.|.+++.+|+++.|++++.+..   ...|++.+
T Consensus        12 ~~~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~   91 (124)
T 1xfl_A           12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQA   91 (124)
T ss_dssp             CCCCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCS
T ss_pred             hcCCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCc
Confidence            3567889999 7789988887631 236888888    9999999999999999999999999999874   57899999


Q ss_pred             CcEEEEEECCEEEeEEeCc
Q psy14385        196 LPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       196 LPTllvYk~G~~v~~lvG~  214 (228)
                      +||+++|++|+.+.++.|.
T Consensus        92 ~Pt~~~~~~G~~~~~~~G~  110 (124)
T 1xfl_A           92 MPTFMFLKEGKILDKVVGA  110 (124)
T ss_dssp             SSEEEEEETTEEEEEEESC
T ss_pred             cCEEEEEECCEEEEEEeCC
Confidence            9999999999999999995

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.46  E-value=2.2e-13  Score=103.53  Aligned_cols=88  Identities=17%  Similarity=0.395  Sum_probs=76.2

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      ..+|.+.+++..++++.+.+.+  .+|||+|    |++|+.+.+.|.+++++|++++|++++++..   ...|++.++||
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~--k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt   86 (114)
T 2oe3_A            9 SSYTSITKLTNLTEFRNLIKQN--DKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPT   86 (114)
T ss_dssp             CCGGGSCBCCSHHHHHHHHHHC--SEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSE
T ss_pred             cchhheeecCCHHHHHHHHhCC--CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccE
Confidence            3578899997766666665554  5788888    9999999999999999999999999999874   57899999999


Q ss_pred             EEEEECCEEEeEEeCcc
Q psy14385        199 LFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       199 llvYk~G~~v~~lvG~~  215 (228)
                      +++|++|+.+.+++|..
T Consensus        87 ~~~~~~G~~~~~~~G~~  103 (114)
T 2oe3_A           87 FVLGKDGQLIGKIIGAN  103 (114)
T ss_dssp             EEEEETTEEEEEEESSC
T ss_pred             EEEEeCCeEEEEEeCCC
Confidence            99999999999999975

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.46  E-value=3.9e-13  Score=99.57  Aligned_cols=89  Identities=27%  Similarity=0.497  Sum_probs=77.9

Q ss_pred             CCCceEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        127 RFGRVLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       127 ~fG~V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      ..|.+.+| +.++|.+.+..+. .+.+|||+|    |++|+.+.+.|.+++++|+++.|+.++.+..   ...|++.++|
T Consensus         2 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~P   81 (113)
T 1ti3_A            2 EEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMP   81 (113)
T ss_dssp             CCCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTT
T ss_pred             CCCceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCccc
Confidence            35789999 7789998887632 246888888    9999999999999999999999999999874   4789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+.+.++.|..
T Consensus        82 t~~~~~~G~~~~~~~g~~   99 (113)
T 1ti3_A           82 TFIFLKDGKLVDKTVGAD   99 (113)
T ss_dssp             EEEEEETTEEEEEEECCC
T ss_pred             EEEEEeCCEEEEEEecCC
Confidence            999999999999999953

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.45  E-value=4.1e-13  Score=100.18  Aligned_cols=89  Identities=24%  Similarity=0.409  Sum_probs=76.6

Q ss_pred             CCCceEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        127 RFGRVLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       127 ~fG~V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      ..|.+++| +.++|...+..+. .+.+|||+|    |++|+.+.+.|.+++.+|+++.|+.++.+..   ...|++.++|
T Consensus         4 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~P   83 (118)
T 2vm1_A            4 EEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMP   83 (118)
T ss_dssp             -CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBS
T ss_pred             CCCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCc
Confidence            45789999 6789988887631 135788888    9999999999999999999999999999875   4789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+.+.++.|..
T Consensus        84 t~~~~~~g~~~~~~~g~~  101 (118)
T 2vm1_A           84 TFLFIKDGEKVDSVVGGR  101 (118)
T ss_dssp             EEEEEETTEEEEEEESCC
T ss_pred             EEEEEeCCeEEEEecCCC
Confidence            999999999999999953

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.45  E-value=9.1e-14  Score=103.05  Aligned_cols=82  Identities=11%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             EEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEE
Q psy14385        132 LEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYF  203 (228)
Q Consensus       132 ~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk  203 (228)
                      .+| +.++|.+.+. .  +.+|+|+|    |++|+.+.+.|.+++++|++++|++||++..   ...|++.++||+++|+
T Consensus         3 ~~i~~~~~~~~~~~-~--~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (105)
T 4euy_A            3 NTFKTIEELATYIE-E--QQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFY   79 (105)
T ss_dssp             -------CCSSSTT-C--SSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEE
T ss_pred             cccCCHHHHHHHHh-c--CCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEe
Confidence            345 4566665553 2  36889988    9999999999999999999999999999874   5899999999999999


Q ss_pred             CCEEEeEEeCccc
Q psy14385        204 EGKMQSQMVGPDE  216 (228)
Q Consensus       204 ~G~~v~~lvG~~~  216 (228)
                      +|+.+.++.|...
T Consensus        80 ~G~~~~~~~g~~~   92 (105)
T 4euy_A           80 NGKEILRESRFIS   92 (105)
T ss_dssp             TTEEEEEEESSCC
T ss_pred             CCeEEEEEeCCcC
Confidence            9999999999764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.45  E-value=4.2e-13  Score=99.47  Aligned_cols=86  Identities=20%  Similarity=0.359  Sum_probs=74.6

Q ss_pred             CceEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        129 GRVLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       129 G~V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      |.|.+| +.++|.+.+.++. .+.+|||+|    |++|+.+.+.|.+++.+|+ ++.|++++.+..   ...|++.++||
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   81 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccE
Confidence            578999 6788988887531 025788888    9999999999999999998 899999999874   47899999999


Q ss_pred             EEEEECCEEEeEEeCc
Q psy14385        199 LFIYFEGKMQSQMVGP  214 (228)
Q Consensus       199 llvYk~G~~v~~lvG~  214 (228)
                      +++|++|+.+.++.|.
T Consensus        82 ~~~~~~G~~~~~~~G~   97 (112)
T 1ep7_A           82 FHVYKDGVKADDLVGA   97 (112)
T ss_dssp             EEEEETTEEEEEEESC
T ss_pred             EEEEECCeEEEEEcCC
Confidence            9999999999999997

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.44  E-value=2.7e-13  Score=102.98  Aligned_cols=85  Identities=20%  Similarity=0.405  Sum_probs=73.7

Q ss_pred             CceEE-eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLE-INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~e-Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      |.-.+ .+.++|.+.+.+.. +.+|||+|    |++|+.+.+.|.+++++|+++.|++|+.+..   ...|++.++||++
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   89 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAG-DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQ   89 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHT-TSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             CcccCCCCHHHHHHHHHhcC-CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEE
Confidence            34334 47899998887542 46888888    9999999999999999999999999999985   5889999999999


Q ss_pred             EEECCEEEeEEeCc
Q psy14385        201 IYFEGKMQSQMVGP  214 (228)
Q Consensus       201 vYk~G~~v~~lvG~  214 (228)
                      +|++|+.+.++.|.
T Consensus        90 ~~~~G~~~~~~~G~  103 (116)
T 3qfa_C           90 FFKKGQKVGEFSGA  103 (116)
T ss_dssp             EESSSSEEEEEESC
T ss_pred             EEeCCeEEEEEcCC
Confidence            99999999999997

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.44  E-value=5.7e-13  Score=98.98  Aligned_cols=86  Identities=23%  Similarity=0.400  Sum_probs=76.0

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      |.|..++.++|...+.+.+  .+|||+|    |++|+.+.+.|.+++++|+ .+.|+.++.+..   ...|++.++||++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~--~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   82 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKND--KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN   82 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEEecchhhHHHHHhhCC--CeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence            5789999999998887553  5788888    9999999999999999995 699999999874   5789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+.++.|...
T Consensus        83 ~~~~G~~~~~~~G~~~   98 (112)
T 1t00_A           83 VYQGGEVAKTIVGAKP   98 (112)
T ss_dssp             EEETTEEEEEEESCCC
T ss_pred             EEeCCEEEEEEeCCCC
Confidence            9999999999999753

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.44  E-value=8.1e-13  Score=97.33  Aligned_cols=86  Identities=21%  Similarity=0.420  Sum_probs=75.4

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.|.+++.++|...+.+.  +.+|||+|    |++|+.+.+.|.+++.+|+ .+.|++++.+..   ...|++.++||++
T Consensus         2 ~~v~~l~~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTC--SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CcceecchhhHHHHHHhc--CCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            468899999999888644  36788888    9999999999999999997 699999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+.++.|...
T Consensus        80 ~~~~G~~~~~~~G~~~   95 (108)
T 2trx_A           80 LFKNGEVAATKVGALS   95 (108)
T ss_dssp             EEETTEEEEEEESCCC
T ss_pred             EEeCCEEEEEEecCCC
Confidence            9999999999999753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.43  E-value=4.3e-13  Score=115.93  Aligned_cols=88  Identities=18%  Similarity=0.301  Sum_probs=78.3

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      .+.|++++.++|...+. .+++++|||+|    |++|+.+.|.|.+++.+|++ ++|++||++..   ...|++.++||+
T Consensus         6 ~~~v~~~~~~~f~~~~~-~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            6 VENIVNINESNLQQVLE-QSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             CTTEEECCTTTHHHHHT-TTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             CCccEECCHHHHHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            56799999999998664 43467899999    99999999999999999986 99999999985   589999999999


Q ss_pred             EEEECCEEEeEEeCccc
Q psy14385        200 FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~  216 (228)
                      ++|++|+.+.++.|...
T Consensus        85 ~~~~~G~~~~~~~g~~~  101 (287)
T 3qou_A           85 YLFQNGQPVDGFQGPQP  101 (287)
T ss_dssp             EEEETTEEEEEEESCCC
T ss_pred             EEEECCEEEEEeeCCCC
Confidence            99999999999999753

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.43  E-value=8.3e-13  Score=104.99  Aligned_cols=89  Identities=20%  Similarity=0.415  Sum_probs=75.6

Q ss_pred             cCCCceEEeC-hhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        126 SRFGRVLEIN-GDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       126 ~~fG~V~eIs-~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      ..+|.+..|+ .++|...+.+. ++.+|||+|    |++|+.+.+.|.+++++|+++.|++|+.+..   ...|++.++|
T Consensus         9 ~~~~~v~~l~~~~~~~~~~~~~-~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P   87 (153)
T 2wz9_A            9 AAVAAVEEVGSAGQFEELLRLK-AKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVP   87 (153)
T ss_dssp             ---CCSEEECSHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             cccCCeEEcCCHHHHHHHHHhc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCC
Confidence            4578899996 57888777653 346788888    9999999999999999999999999999874   4789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+.+.++.|..
T Consensus        88 t~~~~~~G~~~~~~~G~~  105 (153)
T 2wz9_A           88 TFLFFKNSQKIDRLDGAH  105 (153)
T ss_dssp             EEEEEETTEEEEEEESSC
T ss_pred             EEEEEECCEEEEEEeCCC
Confidence            999999999999999964

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.43  E-value=7.6e-13  Score=99.19  Aligned_cols=85  Identities=18%  Similarity=0.331  Sum_probs=73.7

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      .|.....+.++|...+.+   +.+|||+|    |++|+.+.+.|.+++++|+++.|++|+.+..   ...|++.++||++
T Consensus         6 ~~~~~~~~~~~f~~~~~~---~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~   82 (109)
T 3f3q_A            6 HMVTQFKTASEFDSAIAQ---DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLL   82 (109)
T ss_dssp             CCCEECCSHHHHHHHTTS---SSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccccCCCCHHHHHHHHhc---CCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEEE
Confidence            344555578888877753   35788888    9999999999999999999999999999985   5789999999999


Q ss_pred             EEECCEEEeEEeCcc
Q psy14385        201 IYFEGKMQSQMVGPD  215 (228)
Q Consensus       201 vYk~G~~v~~lvG~~  215 (228)
                      +|++|+.+.++.|..
T Consensus        83 ~~~~G~~~~~~~G~~   97 (109)
T 3f3q_A           83 LFKNGKEVAKVVGAN   97 (109)
T ss_dssp             EEETTEEEEEEESSC
T ss_pred             EEECCEEEEEEeCCC
Confidence            999999999999974

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.42  E-value=1.4e-12  Score=94.30  Aligned_cols=83  Identities=20%  Similarity=0.388  Sum_probs=73.6

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYF  203 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk  203 (228)
                      |.+++.++|.+.+.+.   .+|||+|    |++|+.+.+.|.+++++|+++.|+.++.+..   ...|++.++||+++|+
T Consensus         1 V~~l~~~~~~~~~~~~---~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   77 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASH---EIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFK   77 (104)
T ss_dssp             CEECCTTTHHHHHHHS---SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEE
T ss_pred             CeecCHHHHHHHHhcC---CcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEE
Confidence            5678999999988543   5788888    9999999999999999999999999999874   4789999999999999


Q ss_pred             CCEEEeEEeCccc
Q psy14385        204 EGKMQSQMVGPDE  216 (228)
Q Consensus       204 ~G~~v~~lvG~~~  216 (228)
                      +|+.+.++.|...
T Consensus        78 ~g~~~~~~~g~~~   90 (104)
T 2e0q_A           78 DGEPVDEIIGAVP   90 (104)
T ss_dssp             TTEEEEEEESCCC
T ss_pred             CCeEhhhccCCCC
Confidence            9999999999753

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.42  E-value=1.1e-12  Score=96.08  Aligned_cols=86  Identities=23%  Similarity=0.380  Sum_probs=75.2

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.|.+++.++|...+.+.  +.+|||+|    |++|+.+.+.|.+++.+|+ ++.|+.++.+..   ...|++.++||++
T Consensus         2 ~~v~~l~~~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKA--SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLM   79 (107)
T ss_dssp             CCEEECCTTTHHHHTTTC--SSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred             CceeecchhhhhHHHHhC--CCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence            358899999999888544  36888888    9999999999999999997 699999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+.++.|...
T Consensus        80 ~~~~G~~~~~~~G~~~   95 (107)
T 2i4a_A           80 LVRDGKVIDKKVGALP   95 (107)
T ss_dssp             EEETTEEEEEEESCCC
T ss_pred             EEeCCEEEEEecCCCC
Confidence            9999999999998653

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.42  E-value=1.2e-12  Score=95.60  Aligned_cols=84  Identities=20%  Similarity=0.356  Sum_probs=74.7

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      ..+.+++.++|...+  .  +.+|||+|    |++|+.+.+.|.+++++|++ +.|+.++.+..   ...|++.++||++
T Consensus         3 ~~v~~l~~~~~~~~~--~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   78 (106)
T 3die_A            3 MAIVKVTDADFDSKV--E--SGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLI   78 (106)
T ss_dssp             CCCEECCTTTHHHHS--C--SSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred             cceEECCHHHHHHHh--c--CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEE
Confidence            357889999999988  2  35788888    99999999999999999986 99999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+.++.|...
T Consensus        79 ~~~~G~~~~~~~g~~~   94 (106)
T 3die_A           79 VFKDGQPVDKVVGFQP   94 (106)
T ss_dssp             EEETTEEEEEEESCCC
T ss_pred             EEeCCeEEEEEeCCCC
Confidence            9999999999999754

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.42  E-value=1.8e-12  Score=94.97  Aligned_cols=86  Identities=19%  Similarity=0.337  Sum_probs=76.4

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      .+.+..++.++|...+.+.   .+|||+|    |++|+.+.+.|.+++.+|+ .+.|+.++.+..   ...|++.++||+
T Consensus         3 ~~~v~~l~~~~~~~~~~~~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~   79 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNN---KLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTT   79 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHS---SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCeEEEecHHHHHHHHhcC---CeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEE
Confidence            4578889999999888653   5788888    9999999999999999998 699999999974   578999999999


Q ss_pred             EEEECCEEEeEEeCccc
Q psy14385        200 FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~  216 (228)
                      ++|++|+.+.++.|...
T Consensus        80 ~~~~~g~~~~~~~g~~~   96 (109)
T 3tco_A           80 LIFVNGQLVDSLVGAVD   96 (109)
T ss_dssp             EEEETTEEEEEEESCCC
T ss_pred             EEEcCCcEEEeeeccCC
Confidence            99999999999999753

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.41  E-value=2e-12  Score=97.61  Aligned_cols=86  Identities=21%  Similarity=0.398  Sum_probs=74.2

Q ss_pred             ceEEeChhhHHHHHHhc-CCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNA-GEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a-~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .+..++.++|...+.++ +.+.+|||+|    |++|+.+.+.|.+++++|+++.|++|+.+..   ...|++.++||+++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   93 (122)
T 2vlu_A           14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLF   93 (122)
T ss_dssp             CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence            34455889999988762 1235788888    9999999999999999999999999999874   47899999999999


Q ss_pred             EECCEEEeEEeCcc
Q psy14385        202 YFEGKMQSQMVGPD  215 (228)
Q Consensus       202 Yk~G~~v~~lvG~~  215 (228)
                      |++|+.+.++.|..
T Consensus        94 ~~~G~~~~~~~G~~  107 (122)
T 2vlu_A           94 MKEGDVKDRVVGAI  107 (122)
T ss_dssp             EETTEEEEEEESSC
T ss_pred             EeCCEEEEEEeCcC
Confidence            99999999999975

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.41  E-value=1.4e-12  Score=96.67  Aligned_cols=86  Identities=19%  Similarity=0.234  Sum_probs=75.4

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.|.+++.++|...+.+.  +.+|||+|    |++|+.+.+.|++++++|+ .+.|+.++.+..   ...|++.++||++
T Consensus         7 ~~v~~l~~~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~   84 (115)
T 1thx_A            7 KGVITITDAEFESEVLKA--EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALR   84 (115)
T ss_dssp             CSEEECCGGGHHHHTTTC--SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CceEEeeccchhhHhhcC--CceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEE
Confidence            458999999999887543  35788888    9999999999999999997 699999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+.++.|...
T Consensus        85 ~~~~G~~~~~~~g~~~  100 (115)
T 1thx_A           85 LVKGEQILDSTEGVIS  100 (115)
T ss_dssp             EEETTEEEEEEESCCC
T ss_pred             EEcCCEEEEEecCCCC
Confidence            9999999999998753

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.41  E-value=1.7e-12  Score=94.88  Aligned_cols=83  Identities=24%  Similarity=0.431  Sum_probs=72.7

Q ss_pred             eEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        131 VLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       131 V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      |.+|+. ++|...+.+.. +.+|||+|    |++|+.+.+.|.+++.+| +++.|++++.+..   ...|++.++||+++
T Consensus         2 v~~l~~~~~~~~~l~~~~-~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   80 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKAS-GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVF   80 (106)
T ss_dssp             EEECCSHHHHHHHHHHHT-TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceecCCHHHHHHHHHhcC-CCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEE
Confidence            567866 88888887532 36788888    999999999999999999 7899999999874   47899999999999


Q ss_pred             EECCEEEeEEeCc
Q psy14385        202 YFEGKMQSQMVGP  214 (228)
Q Consensus       202 Yk~G~~v~~lvG~  214 (228)
                      |++|+.+.++.|.
T Consensus        81 ~~~G~~~~~~~g~   93 (106)
T 1xwb_A           81 LKNGVKVEEFAGA   93 (106)
T ss_dssp             EETTEEEEEEESC
T ss_pred             EcCCcEEEEEcCC
Confidence            9999999999995

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.41  E-value=1.7e-12  Score=94.80  Aligned_cols=85  Identities=18%  Similarity=0.350  Sum_probs=73.6

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      |.|.+++.++|...+. .+  .+++|+|    |++|+.+.+.|.+++.+|+ .+.|+.++.+..   ...|++.++||++
T Consensus         1 ~~v~~l~~~~~~~~~~-~~--~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   77 (109)
T 2yzu_A            1 AKPIEVTDQNFDETLG-QH--PLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVI   77 (109)
T ss_dssp             -CCEECCTTTHHHHHH-HC--SEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CcceEccHhHHHHHhc-CC--CeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEE
Confidence            5788999999995554 33  5788888    9999999999999999998 699999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+..+.|...
T Consensus        78 ~~~~g~~~~~~~g~~~   93 (109)
T 2yzu_A           78 LFKDGQPVEVLVGAQP   93 (109)
T ss_dssp             EEETTEEEEEEESCCC
T ss_pred             EEeCCcEeeeEeCCCC
Confidence            9999999999998753

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.41  E-value=2.9e-13  Score=105.57  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=74.6

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeC---------CCC---CCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIS---------TTC---IPNY  191 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~a---------d~~---~~~y  191 (228)
                      .|.+.+++.++|...+.+     +|||+|    |++|+.+.+.|.+++++|+ ++|++|++         +..   ...|
T Consensus        15 ~~~v~~l~~~~~~~~~~~-----~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~   88 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG-----DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKA   88 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS-----SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             cCceeecCHHHHHHHhCC-----cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHc
Confidence            578999999999988853     688888    9999999999999999999 99999999         442   4689


Q ss_pred             CCCCCcEEEEEECCEEEeEEeCcccc
Q psy14385        192 PDKNLPTLFIYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       192 ~v~~LPTllvYk~G~~v~~lvG~~~~  217 (228)
                      ++.++||+++|++|+.+.+++|....
T Consensus        89 ~v~~~Pt~~~~~~G~~v~~~~G~~~~  114 (135)
T 3emx_A           89 GVEGTPTLVFYKEGRIVDKLVGATPW  114 (135)
T ss_dssp             TCCSSSEEEEEETTEEEEEEESCCCH
T ss_pred             CCceeCeEEEEcCCEEEEEEeCCCCH
Confidence            99999999999999999999998643

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.41  E-value=1.6e-12  Score=97.84  Aligned_cols=85  Identities=20%  Similarity=0.343  Sum_probs=74.3

Q ss_pred             CceEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.+.+|+. ++|...+.+. ++.+|||+|    |++|+.+.+.|.+++++| ++.|++++.+..   ...|++.++||++
T Consensus        13 ~~v~~l~~~~~~~~~l~~~-~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   90 (117)
T 2xc2_A           13 SELIELKQDGDLESLLEQH-KNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFI   90 (117)
T ss_dssp             CEEEECCSTTHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             heeEEeCCHHHHHHHHHhC-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEE
Confidence            34889976 8898888753 246788888    999999999999999999 999999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCcc
Q psy14385        201 IYFEGKMQSQMVGPD  215 (228)
Q Consensus       201 vYk~G~~v~~lvG~~  215 (228)
                      +|++|+.+.++.|..
T Consensus        91 ~~~~G~~~~~~~G~~  105 (117)
T 2xc2_A           91 AIKNGEKVGDVVGAS  105 (117)
T ss_dssp             EEETTEEEEEEESSC
T ss_pred             EEeCCcEEEEEeCCC
Confidence            999999999999953

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.40  E-value=2e-12  Score=94.12  Aligned_cols=83  Identities=20%  Similarity=0.349  Sum_probs=72.0

Q ss_pred             eEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |.+|+. ++|.+.+.+. .+.+|||+|    |++|+.+.+.|.+++.+|+++.|+.++.+..   ...|++.++||+++|
T Consensus         1 v~~i~~~~~~~~~l~~~-~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (104)
T 2vim_A            1 MRVLATAADLEKLINEN-KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFI   79 (104)
T ss_dssp             CEECCSHHHHHHHHHTT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeecCCHHHHHHHHHhc-CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEE
Confidence            457755 7888877642 346788888    9999999999999999999999999999874   478999999999999


Q ss_pred             ECCEEEeEEeCc
Q psy14385        203 FEGKMQSQMVGP  214 (228)
Q Consensus       203 k~G~~v~~lvG~  214 (228)
                      ++|+.+.++.|.
T Consensus        80 ~~g~~~~~~~G~   91 (104)
T 2vim_A           80 KDGKEVDRFSGA   91 (104)
T ss_dssp             ETTEEEEEEESS
T ss_pred             eCCcEEEEEeCC
Confidence            999999999995

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.40  E-value=7.7e-13  Score=102.46  Aligned_cols=87  Identities=23%  Similarity=0.344  Sum_probs=75.7

Q ss_pred             CCceEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        128 FGRVLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       128 fG~V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      -+.+..| +.++|.+.+..+. .+.+|||+|    |++|+.+.+.|.+++.+|+++.|+.|+++..   ...|++.++||
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt  102 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPT  102 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESE
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccE
Confidence            4568888 5789988886431 235788888    9999999999999999999999999999974   47899999999


Q ss_pred             EEEEECCEEEeEEeCc
Q psy14385        199 LFIYFEGKMQSQMVGP  214 (228)
Q Consensus       199 llvYk~G~~v~~lvG~  214 (228)
                      +++|++|+.+.++.|.
T Consensus       103 ~~~~~~G~~~~~~~G~  118 (139)
T 3d22_A          103 FFFLRDGQQVDKLVGA  118 (139)
T ss_dssp             EEEEETTEEEEEEESC
T ss_pred             EEEEcCCeEEEEEeCC
Confidence            9999999999999997

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.40  E-value=1.3e-12  Score=104.85  Aligned_cols=86  Identities=13%  Similarity=0.273  Sum_probs=76.2

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      .|.+.+++..+|...+ +.  +.+|||+|    |++|+.+.+.|+++|++|+ .++|++||.+..   ...|++.++||+
T Consensus        46 ~~~~~~l~~~~f~~~~-~~--~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  122 (155)
T 2ppt_A           46 TGKVAGIDPAILARAE-RD--DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAF  122 (155)
T ss_dssp             CSSEEECCHHHHHHHT-TC--SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEE
T ss_pred             CCCCccCCHHHHHHHH-hC--CCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEE
Confidence            4678999999999888 33  35788888    9999999999999999996 799999999875   478999999999


Q ss_pred             EEEECCEEEeEEeCccc
Q psy14385        200 FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~  216 (228)
                      ++|++|+.+.++.|...
T Consensus       123 ~~~~~G~~~~~~~G~~~  139 (155)
T 2ppt_A          123 ILFHKGRELARAAGARP  139 (155)
T ss_dssp             EEEETTEEEEEEESCCC
T ss_pred             EEEeCCeEEEEecCCCC
Confidence            99999999999999753

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.39  E-value=1.5e-12  Score=100.93  Aligned_cols=81  Identities=26%  Similarity=0.457  Sum_probs=72.5

Q ss_pred             eEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |.+|+. ++|.+.+. .  +.+|||+|    |++|+.+.+.|.+++++|+++.|++|+++..   ...|++.++||+++|
T Consensus        21 v~~l~~~~~f~~~~~-~--~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~   97 (125)
T 1r26_A           21 VVDVYSVEQFRNIMS-E--DILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIA   97 (125)
T ss_dssp             CEEECCHHHHHHHHH-S--SSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             eEECCCHHHHHHHHc-c--CCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            788977 89988883 3  35788888    9999999999999999999999999999874   478999999999999


Q ss_pred             ECCEEEeEEeCc
Q psy14385        203 FEGKMQSQMVGP  214 (228)
Q Consensus       203 k~G~~v~~lvG~  214 (228)
                      ++|+.+.++.|.
T Consensus        98 ~~G~~~~~~~G~  109 (125)
T 1r26_A           98 RSGKMLGHVIGA  109 (125)
T ss_dssp             ETTEEEEEEESS
T ss_pred             eCCeEEEEEeCC
Confidence            999999999995

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.39  E-value=1.9e-12  Score=100.31  Aligned_cols=86  Identities=20%  Similarity=0.378  Sum_probs=75.4

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.|..++.++|...+.+.  +.+|||+|    |++|+.+.+.|.+++++|+ ++.|++|+.+..   ...|++.++||++
T Consensus        22 ~~v~~l~~~~f~~~~~~~--~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   99 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL   99 (128)
T ss_dssp             CCSEEECTTTHHHHTTTC--SSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEE
T ss_pred             cccEecChhhHHHHHHhc--CCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEE
Confidence            458899999999887544  36888888    9999999999999999997 699999998863   5789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+.++.|...
T Consensus       100 ~~~~G~~~~~~~G~~~  115 (128)
T 2o8v_B          100 LFKNGEVAATKVGALS  115 (128)
T ss_dssp             EEETTEEEEEEESCCC
T ss_pred             EEeCCEEEEEEcCCCC
Confidence            9999999999999753

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.39  E-value=2.4e-12  Score=96.55  Aligned_cols=83  Identities=19%  Similarity=0.272  Sum_probs=73.2

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|++++.++|.+.+  .  +.+|||+|    |++|+.+.+.|.+++++|+ ++.|+.|+.+..   ...|++.++||+++
T Consensus         2 ~v~~l~~~~~~~~~--~--~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   77 (112)
T 2voc_A            2 AIVKATDQSFSAET--S--EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV   77 (112)
T ss_dssp             CCEECCTTTHHHHH--S--SSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEE
T ss_pred             CeEEecHHHHHHHh--C--CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence            36789999999888  3  35788888    9999999999999999996 699999999874   47899999999999


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                      |++|+.+.++.|...
T Consensus        78 ~~~G~~~~~~~G~~~   92 (112)
T 2voc_A           78 LKDGEVVETSVGFKP   92 (112)
T ss_dssp             EETTEEEEEEESCCC
T ss_pred             EeCCEEEEEEeCCCC
Confidence            999999999999764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.39  E-value=1.8e-12  Score=97.28  Aligned_cols=87  Identities=18%  Similarity=0.333  Sum_probs=76.1

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      .+.+..++.++|...+.+.+  .+|||+|    |++|+.+.+.|.+++.+|+ ++.|++|+.+..   ...|++.++||+
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~   88 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSN--KPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL   88 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cccceecCHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEE
Confidence            45789999999998887553  5788888    9999999999999999996 699999999874   478999999999


Q ss_pred             EEEECCEEEeEEeCccc
Q psy14385        200 FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~  216 (228)
                      ++|++|+.+.++.|...
T Consensus        89 ~~~~~g~~~~~~~G~~~  105 (121)
T 2i1u_A           89 ILFKDGQPVKRIVGAKG  105 (121)
T ss_dssp             EEEETTEEEEEEESCCC
T ss_pred             EEEECCEEEEEecCCCC
Confidence            99999999999999763

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.39  E-value=3.6e-12  Score=95.39  Aligned_cols=85  Identities=15%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      ..+....++.++|.+.+.+.   .+|||+|    |++|+.+.+.|.+++++|+++.|+.|+.+..   ...|++.++||+
T Consensus         7 ~~~~~~~~~~~~f~~~~~~~---k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   83 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIISQN---ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTF   83 (112)
T ss_dssp             --CCEEECSHHHHHHHHHHC---SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             ceeEEEECCHHHHHHHHccC---CeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            34556667999999988633   5788888    9999999999999999999999999999874   478999999999


Q ss_pred             EEEECCEEEeEEeCc
Q psy14385        200 FIYFEGKMQSQMVGP  214 (228)
Q Consensus       200 lvYk~G~~v~~lvG~  214 (228)
                      ++|++|+.+.++.|.
T Consensus        84 ~~~~~G~~~~~~~G~   98 (112)
T 1syr_A           84 KVYKNGSSVDTLLGA   98 (112)
T ss_dssp             EEEETTEEEEEEESC
T ss_pred             EEEECCcEEEEEeCC
Confidence            999999999999997

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.38  E-value=1.8e-12  Score=94.52  Aligned_cols=85  Identities=20%  Similarity=0.396  Sum_probs=73.6

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      +|..++.++|...+.+.  +.++||+|    |++|+.+.+.|.+++++|++ +.|+.++.+..   ...|++.++||+++
T Consensus         1 ~v~~~~~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (105)
T 1fb6_A            1 EVQDVNDSSWKEFVLES--EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLF   78 (105)
T ss_dssp             -CEECCTTTHHHHTTTC--SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CceechhhhHHHHHhcC--CCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEE
Confidence            36788999999888654  35788888    99999999999999999974 99999999874   47899999999999


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                      |++|+.+..+.|...
T Consensus        79 ~~~g~~~~~~~G~~~   93 (105)
T 1fb6_A           79 FKNGERKESIIGAVP   93 (105)
T ss_dssp             EETTEEEEEEEECCC
T ss_pred             EeCCeEEEEEecCCC
Confidence            999999999998753

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.38  E-value=2.6e-12  Score=108.36  Aligned_cols=89  Identities=20%  Similarity=0.387  Sum_probs=79.8

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCc
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      +.+|.+..+|.++|...+.+.+  .+|||+|    |++|+.+.+.|.+|+++|++ +.|++|+++..   ...|++.++|
T Consensus         9 ~~~~~~~~lt~~~f~~~v~~~~--k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~P   86 (222)
T 3dxb_A            9 PMSDKIIHLTDDSFDTDVLKAD--GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP   86 (222)
T ss_dssp             CCSCCCEECCTTTHHHHHTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBS
T ss_pred             CCCCCceeCCHHHHHHHHHhcC--CEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCC
Confidence            5678999999999999886553  5888888    99999999999999999986 99999999874   5889999999


Q ss_pred             EEEEEECCEEEeEEeCccc
Q psy14385        198 TLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~~  216 (228)
                      |+++|++|+.+.++.|...
T Consensus        87 t~~~~~~G~~~~~~~G~~~  105 (222)
T 3dxb_A           87 TLLLFKNGEVAATKVGALS  105 (222)
T ss_dssp             EEEEEETTEEEEEEESCCC
T ss_pred             EEEEEECCeEEEEeccccC
Confidence            9999999999999999753

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=8.3e-13  Score=102.63  Aligned_cols=90  Identities=20%  Similarity=0.238  Sum_probs=78.2

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCC----
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDK----  194 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~----  194 (228)
                      .+.|..++.++|...+.+. ++.+|||+|    |++|+.+.+.|.++|++|.  ++.|++||++..   ...|++.    
T Consensus         6 ~~~v~~l~~~~f~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~   84 (137)
T 2dj0_A            6 SGYIKYFNDKTIDEELERD-KRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPL   84 (137)
T ss_dssp             CSCCEECCTTHHHHHHHHS-TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSS
T ss_pred             CceEEEccHhhHHHHHhcC-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCC
Confidence            3568899999999999655 345788888    9999999999999999995  699999999874   4779998    


Q ss_pred             --CCcEEEEEECCEEEeEEeCccccC
Q psy14385        195 --NLPTLFIYFEGKMQSQMVGPDEFR  218 (228)
Q Consensus       195 --~LPTllvYk~G~~v~~lvG~~~~G  218 (228)
                        ++||+++|++|+.+.++.|.....
T Consensus        85 ~~~~Pt~~~~~~G~~~~~~~G~~~~~  110 (137)
T 2dj0_A           85 TKQLPTLILFQGGKEAMRRPQIDKKG  110 (137)
T ss_dssp             SSCSSEEEEESSSSEEEEESCBCSSS
T ss_pred             cCCCCEEEEEECCEEEEEecCcCchH
Confidence              999999999999999999987553

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.38  E-value=1.1e-12  Score=102.75  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=76.6

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.|.+++.++|.+.+.+.+  .+|||.|    |++|+.+.+.|.+++++|++ +.|++|+.+..   ...|++.++||++
T Consensus         6 ~~v~~l~~~~f~~~~~~~~--~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   83 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVEDSK--KPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFK   83 (140)
T ss_dssp             TTEEEECHHHHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEE
T ss_pred             cceEEcchHhHHHHHHhCC--CcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEE
Confidence            5689999999998777653  5788888    99999999999999999987 99999999875   4789999999999


Q ss_pred             EEECCEEEeEEeCccc
Q psy14385        201 IYFEGKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~  216 (228)
                      +|++|+.+.++.|...
T Consensus        84 ~~~~G~~~~~~~G~~~   99 (140)
T 3hz4_A           84 FFCHGRPVWEQVGQIY   99 (140)
T ss_dssp             EEETTEEEEEEESSCC
T ss_pred             EEeCCcEEEEEcCCCC
Confidence            9999999999999753

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.37  E-value=2.3e-13  Score=109.01  Aligned_cols=84  Identities=15%  Similarity=0.216  Sum_probs=58.6

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCCCcE--EEEEeCCCC---CCCCCCCCCcE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFPTTK--FIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp~~K--FvkI~ad~~---~~~y~v~~LPT  198 (228)
                      .+..++.++|.+.+.+++   .|||+|      |++|+.|.|.|++||++|+.++  |++||+++.   +..|+++++||
T Consensus        18 ~~~~l~~~~f~~~i~~~~---~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT   94 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVG---DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPA   94 (142)
T ss_dssp             TCEECCCC--------CC---SEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSE
T ss_pred             cCcccccccHHHHHHhCC---CEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCe
Confidence            577888899998886543   366666      8999999999999999997799  999999863   57899999999


Q ss_pred             EEEEECCEEEeEEeCccc
Q psy14385        199 LFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       199 llvYk~G~~v~~lvG~~~  216 (228)
                      +++|++|+.+.+++|...
T Consensus        95 ~~~fk~G~~v~~~~G~~~  112 (142)
T 2es7_A           95 TLVFTDGKLRGALSGIHP  112 (142)
T ss_dssp             EEEESCC----CEESCCC
T ss_pred             EEEEeCCEEEEEEeCCCC
Confidence            999999999999999753

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.37  E-value=3.7e-12  Score=93.31  Aligned_cols=83  Identities=17%  Similarity=0.285  Sum_probs=71.8

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |.+++.++|.. +.+.+  .+|||+|    |++|+.+.+.|++++++|++ +.|+.++.+..   ...|++.++||+++|
T Consensus         2 v~~l~~~~~~~-~~~~~--~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   78 (105)
T 1nsw_A            2 TMTLTDANFQQ-AIQGD--GPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHH-HHSSS--SCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceeccHHhHHH-HHhCC--CcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence            67889999984 44443  5788888    99999999999999999975 99999999874   478999999999999


Q ss_pred             ECCEEEeEEeCccc
Q psy14385        203 FEGKMQSQMVGPDE  216 (228)
Q Consensus       203 k~G~~v~~lvG~~~  216 (228)
                      ++|+.+.++.|...
T Consensus        79 ~~G~~~~~~~G~~~   92 (105)
T 1nsw_A           79 KGGRPVKQLIGYQP   92 (105)
T ss_dssp             ETTEEEEEEESCCC
T ss_pred             eCCeEEEEEecCCC
Confidence            99999999999754

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.37  E-value=1.6e-12  Score=95.48  Aligned_cols=85  Identities=21%  Similarity=0.402  Sum_probs=74.2

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|..++.++|...+.+.+  .+|||+|    |++|+.+.+.|.+++++|+ .+.|+.++.+..   ...|++.++||+++
T Consensus         2 ~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESS--VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMV   79 (107)
T ss_dssp             CCEEECHHHHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred             ccEeccHHHHHHHHhcCC--CcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEE
Confidence            367889999998886543  5788888    9999999999999999997 599999999874   47899999999999


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                      |++|+.+.++.|...
T Consensus        80 ~~~G~~~~~~~G~~~   94 (107)
T 1dby_A           80 FKGGKKCETIIGAVP   94 (107)
T ss_dssp             ESSSSEEEEEESCCC
T ss_pred             EeCCEEEEEEeCCCC
Confidence            999999999999754

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.37  E-value=3.7e-12  Score=93.78  Aligned_cols=85  Identities=20%  Similarity=0.297  Sum_probs=74.6

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCCC---CCCCCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTTC---IPNYPDKNL  196 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~~---~~~y~v~~L  196 (228)
                      .+.|..++.++|.+.+. .   .+|||+|    |++|+.+.+.|.+++++|    +.+.|++++.+..   ...|++.++
T Consensus         4 ~~~v~~l~~~~~~~~~~-~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   79 (111)
T 3uvt_A            4 GSTVLALTENNFDDTIA-E---GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY   79 (111)
T ss_dssp             -CCSEECCTTTHHHHHH-S---SEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCcceEcChhhHHHHhc-C---CcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcc
Confidence            35788999999999887 2   4778888    999999999999999998    4799999999874   588999999


Q ss_pred             cEEEEEECCEEEeEEeCccc
Q psy14385        197 PTLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       197 PTllvYk~G~~v~~lvG~~~  216 (228)
                      ||+++|++|+.+.++.|...
T Consensus        80 Pt~~~~~~g~~~~~~~g~~~   99 (111)
T 3uvt_A           80 PTLLLFRGGKKVSEHSGGRD   99 (111)
T ss_dssp             SEEEEEETTEEEEEECSCCS
T ss_pred             cEEEEEeCCcEEEeccCCcC
Confidence            99999999999999998753

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.36  E-value=1.3e-12  Score=97.99  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             EeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385        133 EINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       133 eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G  205 (228)
                      .++.++| +.+.+.   .++||+|    |++|+.+.+.|.+++.+|+++.|++++.+..   ...|++.++||+++|++|
T Consensus         7 ~~~~~~f-~~~~~~---~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   82 (110)
T 2l6c_A            7 ITTEAGM-AHFEGL---SDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDG   82 (110)
T ss_dssp             CGGGCSH-HHHTTC---SEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESS
T ss_pred             cCCHHHH-HHHHcC---CCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEECC
Confidence            3478889 777543   4778888    9999999999999999999999999999864   478999999999999999


Q ss_pred             EEEeEEeCcc
Q psy14385        206 KMQSQMVGPD  215 (228)
Q Consensus       206 ~~v~~lvG~~  215 (228)
                      +.+.+++|..
T Consensus        83 ~~v~~~~G~~   92 (110)
T 2l6c_A           83 KVAKVFSGIM   92 (110)
T ss_dssp             SEEEEEESCC
T ss_pred             EEEEEEcCCC
Confidence            9999999964

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.36  E-value=3.4e-12  Score=97.21  Aligned_cols=85  Identities=21%  Similarity=0.319  Sum_probs=74.3

Q ss_pred             ceEEe--ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        130 RVLEI--NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       130 ~V~eI--s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      .|..+  +.++|.+.+.+.+  .+|||+|    |++|+.+.+.|.+++.+|+++.|++|+.+..   ...|++.++||++
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~--~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   81 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAP--GLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALF   81 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cceEecCCHHHHHHHHHhCC--CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            46777  5678887776553  5788888    9999999999999999999999999999874   4789999999999


Q ss_pred             EEEC----CEEEeEEeCccc
Q psy14385        201 IYFE----GKMQSQMVGPDE  216 (228)
Q Consensus       201 vYk~----G~~v~~lvG~~~  216 (228)
                      +|++    |+.+.+++|...
T Consensus        82 ~~~~~~~~G~~~~~~~G~~~  101 (118)
T 2f51_A           82 FVKKEGNEIKTLDQFVGADV  101 (118)
T ss_dssp             EEEEETTEEEEEEEEESCCH
T ss_pred             EEeCCCCcceEEEeecCCCH
Confidence            9999    999999999864

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.34  E-value=4.9e-12  Score=101.01  Aligned_cols=82  Identities=16%  Similarity=0.339  Sum_probs=71.7

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      +..+ +.++|...+... ++.+|||+|    |++|+.+.+.|.+++++|++ +.|++||++..   ...|.+.++||+++
T Consensus         5 l~~i~~~~~~~~~i~~~-~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~   83 (149)
T 3gix_A            5 LPKLTSKKEVDQAIKST-AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVF   83 (149)
T ss_dssp             CCEECSHHHHHHHHHHC-CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEE
T ss_pred             eeecCCHHHHHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEE
Confidence            4455 678898888633 246899999    99999999999999999987 99999999875   47899999999999


Q ss_pred             EECCEEE---------eEEeC
Q psy14385        202 YFEGKMQ---------SQMVG  213 (228)
Q Consensus       202 Yk~G~~v---------~~lvG  213 (228)
                      |++|+.+         .+++|
T Consensus        84 ~~~G~~v~~~~g~~~~~~~~G  104 (149)
T 3gix_A           84 FFNGQHMKVDYGSPDHTKFVG  104 (149)
T ss_dssp             EETTEEEEEECSSSCCSCEES
T ss_pred             EECCeEEEeecCCCCCCeEee
Confidence            9999999         88988

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.34  E-value=4.7e-12  Score=96.09  Aligned_cols=84  Identities=20%  Similarity=0.282  Sum_probs=73.2

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .+..++.++|.+.+.+.+  .+|||+|    |++|+.+.+.|.+++.+|. .+.|+.|+.+..   ...|++.++||+++
T Consensus        14 ~~~~~~~~~f~~~v~~~~--k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~   91 (119)
T 1w4v_A           14 TFNIQDGPDFQDRVVNSE--TPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLA   91 (119)
T ss_dssp             EEECCSHHHHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEE
T ss_pred             EEEecChhhHHHHHHcCC--CcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEE
Confidence            355669999999887553  5788888    9999999999999999994 799999999874   47899999999999


Q ss_pred             EECCEEEeEEeCcc
Q psy14385        202 YFEGKMQSQMVGPD  215 (228)
Q Consensus       202 Yk~G~~v~~lvG~~  215 (228)
                      |++|+.+.++.|..
T Consensus        92 ~~~G~~~~~~~G~~  105 (119)
T 1w4v_A           92 MKNGDVVDKFVGIK  105 (119)
T ss_dssp             EETTEEEEEEESCC
T ss_pred             EeCCcEEEEEcCCC
Confidence            99999999999874

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.33  E-value=6e-12  Score=98.73  Aligned_cols=86  Identities=21%  Similarity=0.349  Sum_probs=76.0

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      -|.+..++.++|...+ ..  +.+|||+|    |++|+.+.+.|.+++.+| +++.|++|+.+..   ...|++.++||+
T Consensus        37 ~~~v~~l~~~~~~~~~-~~--~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~  113 (148)
T 3p2a_A           37 DGEVINATAETLDKLL-QD--DLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTI  113 (148)
T ss_dssp             CCCCEECCTTTHHHHT-TC--SSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cCCceecCHHHHHHHH-hc--CCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEE
Confidence            4678999999999888 33  36788888    999999999999999999 5799999999985   578999999999


Q ss_pred             EEEECCEEEeEEeCccc
Q psy14385        200 FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~~  216 (228)
                      ++|++|+.+.++.|...
T Consensus       114 ~~~~~G~~~~~~~G~~~  130 (148)
T 3p2a_A          114 MLYRNGKMIDMLNGAVP  130 (148)
T ss_dssp             EEEETTEEEEEESSCCC
T ss_pred             EEEECCeEEEEEeCCCC
Confidence            99999999999998753

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.32  E-value=2e-12  Score=99.75  Aligned_cols=86  Identities=21%  Similarity=0.420  Sum_probs=70.8

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----cc--------------chHHHHHHHHHHHHhCC-CcEEEEEeCCCC--
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IP--------------LCSLINNHLSELAAKFP-TTKFIKSISTTC--  187 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~--------------~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~--  187 (228)
                      +.|.+++.++|...+.+.  +.+|||+|    |+              +|+.+.+.|++++++|+ ++.|++++++..  
T Consensus         3 ~~v~~l~~~~f~~~~~~~--~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG   80 (123)
T ss_dssp             CSCEECCSTTHHHHTTSC--SSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT
T ss_pred             CccEecChhhHHHHHHhC--CCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH
Confidence            468899999999888644  36888888    99              99999999999999997 699999999874  


Q ss_pred             -CCCCCCCCCcEEEEEECCEEEeEEeCccc
Q psy14385        188 -IPNYPDKNLPTLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       188 -~~~y~v~~LPTllvYk~G~~v~~lvG~~~  216 (228)
                       ...|++.++||+++|++|+.+.++.|...
T Consensus        81 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~  110 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNGEVAATKVGALS  110 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESSSEEEEEESCCC
T ss_pred             HHHHcCCCccCEEEEEECCEEEEEEeCCCC
Confidence             58899999999999999999999999753

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.31  E-value=7e-12  Score=95.54  Aligned_cols=86  Identities=20%  Similarity=0.271  Sum_probs=74.0

Q ss_pred             cCCCceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC---CCCCCCCC
Q psy14385        126 SRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC---IPNYPDKN  195 (228)
Q Consensus       126 ~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~---~~~y~v~~  195 (228)
                      +..+.+..| +.++|.+.+ +.  +.+|||.|    |++|+.+.+.|.+++++|++  +.|+.++.+..   ...|++.+
T Consensus        12 ~~~~~~~~i~~~~~f~~~l-~~--~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~   88 (121)
T 2j23_A           12 VPRGSVQVISSYDQFKQVT-GG--DKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA   88 (121)
T ss_dssp             CCCCCEEECCSHHHHHHHH-SS--SSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCS
T ss_pred             cCCcceEEcCCHHHHHHHH-cC--CCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCc
Confidence            445678899 457888777 33  35788888    99999999999999999986  99999999874   47899999


Q ss_pred             CcEEEEEECCEEEeEEeCc
Q psy14385        196 LPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       196 LPTllvYk~G~~v~~lvG~  214 (228)
                      +||+++|++|+.+.++.|.
T Consensus        89 ~Pt~~~~~~G~~~~~~~G~  107 (121)
T 2j23_A           89 MPTFVFFKNGQKIDTVVGA  107 (121)
T ss_dssp             SSEEEEEETTEEEEEEESS
T ss_pred             ccEEEEEECCeEEeeEcCC
Confidence            9999999999999999996

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=6.7e-12  Score=95.60  Aligned_cols=86  Identities=19%  Similarity=0.297  Sum_probs=75.2

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-----CcEEEEEeCCCC---CCCCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-----TTKFIKSISTTC---IPNYPDKN  195 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-----~~KFvkI~ad~~---~~~y~v~~  195 (228)
                      -+.|..++.++|...+.+.+  .+|||+|    |++|+.+.+.|.+++.+|.     .+.|++||.+..   ...|++.+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~--~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~   83 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSE--DVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRG   83 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSS--SEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCS
T ss_pred             CCcCEEcCHhhHHHHHhcCC--CeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCe
Confidence            45688999999998886543  5788888    9999999999999999984     699999999874   47899999


Q ss_pred             CcEEEEEECCEEEeEEeCcc
Q psy14385        196 LPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       196 LPTllvYk~G~~v~~lvG~~  215 (228)
                      +||+++|++|+.+.++.|..
T Consensus        84 ~Pt~~~~~~g~~~~~~~G~~  103 (133)
T 1x5d_A           84 FPTIKIFQKGESPVDYDGGR  103 (133)
T ss_dssp             SSEEEEEETTEEEEEECSCC
T ss_pred             eCeEEEEeCCCceEEecCCC
Confidence            99999999999999999864

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.30  E-value=8.6e-12  Score=96.88  Aligned_cols=88  Identities=18%  Similarity=0.324  Sum_probs=74.7

Q ss_pred             CCCceEEeChhhHHHHHHhcC---------CCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CC
Q psy14385        127 RFGRVLEINGDTYVQEVNNAG---------EGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IP  189 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~---------~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~  189 (228)
                      .-+.|.+++.++|...|.+.+         .+.+|||+|    |++|+.+.+.|.+++.+|+ .+.|++|+.+..   ..
T Consensus         7 ~~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~   86 (136)
T 2l5l_A            7 GNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAG   86 (136)
T ss_dssp             CTTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH
T ss_pred             cCCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHH
Confidence            346789999999999887532         245788888    9999999999999999997 699999999874   47


Q ss_pred             CCCCCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        190 NYPDKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       190 ~y~v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      .|++.++||+++| ++|+.+ .+.|..
T Consensus        87 ~~~v~~~Pt~~~~~~~G~~~-~~~G~~  112 (136)
T 2l5l_A           87 AFGIRSIPSILFIPMEGKPE-MAQGAM  112 (136)
T ss_dssp             HTTCCSSCEEEEECSSSCCE-EEESCC
T ss_pred             HcCCCCCCEEEEECCCCcEE-EEeCCC
Confidence            8999999999999 999988 677754

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.29  E-value=5e-12  Score=98.54  Aligned_cols=85  Identities=15%  Similarity=0.234  Sum_probs=71.8

Q ss_pred             CCceEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        128 FGRVLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       128 fG~V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      .+.+.+|+. ++|...+. ..++.+|||+|    |++|+.+.+.|.+++.+| .+.|++|+.+..   ...|++.++||+
T Consensus        19 ~~~v~~l~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~   96 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFS-STQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTF   96 (133)
T ss_dssp             TEEEEECCCTTHHHHHHT-C-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CccEEEecChhHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCCCCEE
Confidence            456889965 66665554 44467899988    999999999999999998 799999999874   478999999999


Q ss_pred             EEEE--CCE--EEeEEeCc
Q psy14385        200 FIYF--EGK--MQSQMVGP  214 (228)
Q Consensus       200 lvYk--~G~--~v~~lvG~  214 (228)
                      ++|+  +|+  .+.++.|.
T Consensus        97 ~~~~~~~g~g~~~~~~~G~  115 (133)
T 3cxg_A           97 EFYFNLNNEWVLVHTVEGA  115 (133)
T ss_dssp             EEEEEETTEEEEEEEEESC
T ss_pred             EEEEecCCCeEEEEEEcCC
Confidence            9998  999  99999997

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.29  E-value=2e-11  Score=96.67  Aligned_cols=83  Identities=20%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      +..| +.++|...+.+++ +.+|||+|    |++|+.+.+.|++++++| +.+.|++||++..   ...|++.++||+++
T Consensus         5 l~~i~~~~~~~~~v~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~   83 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILSEE-DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMF   83 (142)
T ss_dssp             SCBCCSHHHHHHHHHTCS-SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEE
T ss_pred             HhccCCHHHHHHHHHhcC-CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEE
Confidence            4566 5788888887522 46899999    999999999999999999 5799999999874   58899999999999


Q ss_pred             EECCEEEeEEeCc
Q psy14385        202 YFEGKMQSQMVGP  214 (228)
Q Consensus       202 Yk~G~~v~~lvG~  214 (228)
                      |++|+.+....|.
T Consensus        84 ~~~G~~v~~~~g~   96 (142)
T 1qgv_A           84 FFRNKHIMIDLGT   96 (142)
T ss_dssp             EETTEEEEEECC-
T ss_pred             EECCcEEEEecCC
Confidence            9999999865553

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.28  E-value=1e-11  Score=96.05  Aligned_cols=89  Identities=12%  Similarity=0.272  Sum_probs=74.1

Q ss_pred             CCCceEEeChhhHHHHHHhcC---------CCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CC
Q psy14385        127 RFGRVLEINGDTYVQEVNNAG---------EGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IP  189 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~---------~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~  189 (228)
                      ..+.+..++.++|...|.+.+         ++.+|||+|    |++|+.+.+.|.+++.+|+ .+.|+.|+.+..   ..
T Consensus        20 ~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   99 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELAR   99 (141)
T ss_dssp             ---CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH
T ss_pred             CCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHH
Confidence            346799999999999997632         246888888    9999999999999999997 699999999874   58


Q ss_pred             CCCCCCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        190 NYPDKNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       190 ~y~v~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      .|++.++||+++| ++|+.+ .+.|...
T Consensus       100 ~~~v~~~Pt~~~~~~~g~~~-~~~G~~~  126 (141)
T 3hxs_A          100 DFGIQSIPTIWFVPMKGEPQ-VNMGALS  126 (141)
T ss_dssp             HTTCCSSSEEEEECSSSCCE-EEESCCC
T ss_pred             HcCCCCcCEEEEEeCCCCEE-EEeCCCC
Confidence            8999999999999 677776 7788643

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.28  E-value=3.5e-12  Score=96.22  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=73.1

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.|.+++.++|...+.+.+  .+|||+|    |++|+.+.+.|.+++.+|+ ++.|++|+.+..   ...|++.++||++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~--~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGK--THWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVK   80 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cchhcCCHHHHHHHHhcCC--CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEE
Confidence            4588999999988776553  5788888    9999999999999999997 799999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCc
Q psy14385        201 IYFEGKMQSQMVGP  214 (228)
Q Consensus       201 vYk~G~~v~~lvG~  214 (228)
                      +|++|..+.++.|.
T Consensus        81 ~~~~~~~~~~~~g~   94 (122)
T 3aps_A           81 LYQYERAKKSIWEE   94 (122)
T ss_dssp             EEEEEGGGTEEEEE
T ss_pred             EEeCCCccceeecc
Confidence            99888778888886

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.25  E-value=9.2e-12  Score=92.38  Aligned_cols=84  Identities=14%  Similarity=0.302  Sum_probs=72.1

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      +.|..++.++|...+.+.   .+|+|+|    |++|+.+.+.|.+++.+|.    .+.|+++|.+..   ...|++.++|
T Consensus         7 ~~v~~l~~~~~~~~~~~~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   83 (120)
T 1mek_A            7 DHVLVLRKSNFAEALAAH---KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP   83 (120)
T ss_dssp             TTEEECCTTTHHHHHHHC---SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred             CCcEEechhhHHHHHccC---CeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCccc
Confidence            568899999999877643   5788888    9999999999999999984    689999998863   4789999999


Q ss_pred             EEEEEECCEEE--eEEeCcc
Q psy14385        198 TLFIYFEGKMQ--SQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v--~~lvG~~  215 (228)
                      |+++|++|+.+  ..+.|..
T Consensus        84 t~~~~~~g~~~~~~~~~g~~  103 (120)
T 1mek_A           84 TIKFFRNGDTASPKEYTAGR  103 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCS
T ss_pred             EEEEEeCCCcCCcccccCcc
Confidence            99999999987  7887754

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=7.9e-12  Score=95.25  Aligned_cols=85  Identities=16%  Similarity=0.207  Sum_probs=73.3

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.|.+++.++|...+.+.+  .+|||+|    |++|+.+.+.|.+++++|++ +.|++||.+..   ...|++.++||++
T Consensus        17 ~~v~~l~~~~f~~~~~~~~--~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~   94 (130)
T 2dml_A           17 DDVIELTPSNFNREVIQSD--GLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK   94 (130)
T ss_dssp             SSSEECCTTTHHHHTTTCS--SCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEE
T ss_pred             CCcEECCHHHHHHHHhcCC--CeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEE
Confidence            4689999999998886543  5788888    99999999999999999976 99999999874   4789999999999


Q ss_pred             EEECCEE-EeEEeCcc
Q psy14385        201 IYFEGKM-QSQMVGPD  215 (228)
Q Consensus       201 vYk~G~~-v~~lvG~~  215 (228)
                      +|++|.. +.++.|..
T Consensus        95 ~~~~~~~~~~~~~G~~  110 (130)
T 2dml_A           95 IFGANKNKPEDYQGGR  110 (130)
T ss_dssp             EESSCTTSCEECCSCC
T ss_pred             EEeCCCCeEEEeecCC
Confidence            9999876 77777754

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.24  E-value=1.6e-11  Score=96.01  Aligned_cols=80  Identities=14%  Similarity=0.183  Sum_probs=68.6

Q ss_pred             CceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCC-C
Q psy14385        129 GRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDK-N  195 (228)
Q Consensus       129 G~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~-~  195 (228)
                      |...+| |.++|.+.+.+   +.+|||+|    |++|+.+.+.|++++.+ ++++|+++|+++.       +..|+|+ .
T Consensus         6 ~~~~~i~s~e~f~~ii~~---~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~   81 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIEE---NKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHE   81 (112)
T ss_dssp             GCEEECCSHHHHHHHHHH---CSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCC
T ss_pred             cceeecCCHHHHHHHHhc---CCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccC
Confidence            567888 56777666654   25899999    99999999999999997 8999999999986       5889999 5


Q ss_pred             CcEEEEEECCEEEeEEe
Q psy14385        196 LPTLFIYFEGKMQSQMV  212 (228)
Q Consensus       196 LPTllvYk~G~~v~~lv  212 (228)
                      .||+++||||+.+.+-.
T Consensus        82 sPq~il~k~G~~v~~~S   98 (112)
T 3iv4_A           82 SPQAFYFVNGEMVWNRD   98 (112)
T ss_dssp             SSEEEEEETTEEEEEEE
T ss_pred             CCeEEEEECCEEEEEee
Confidence            99999999999998843

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=1.5e-11  Score=94.84  Aligned_cols=83  Identities=18%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC----cEEEEEeCCCC---CCCCCCCCCc
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT----TKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~----~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      +.|..++.++|...+.+   +.+|||+|    |++|+.+.+.|.+++.+|.+    +.|++||.+..   ...|++.++|
T Consensus        17 ~~v~~l~~~~~~~~~~~---~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   93 (140)
T 2dj1_A           17 NGVWVLNDGNFDNFVAD---KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYP   93 (140)
T ss_dssp             TTEEECCTTTHHHHHTT---CSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSS
T ss_pred             CCCEEcChHhHHHHHhc---CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccC
Confidence            46889999999987753   25788888    99999999999999998853    99999999874   4789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+ +.++.|..
T Consensus        94 t~~~~~~G~-~~~~~g~~  110 (140)
T 2dj1_A           94 TIKILKKGQ-AVDYDGSR  110 (140)
T ss_dssp             EEEEEETTE-EEECCSCC
T ss_pred             eEEEEECCc-EEEcCCCC
Confidence            999999999 77777754

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.23  E-value=1.5e-11  Score=102.93  Aligned_cols=79  Identities=16%  Similarity=0.280  Sum_probs=67.6

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe-----------ccchHHHHHHHHHHHHhC------CCcEEEEEeCCCC---C
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF-----------IPLCSLINNHLSELAAKF------PTTKFIKSISTTC---I  188 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf-----------~~~C~~l~~~L~~LA~ky------p~~KFvkI~ad~~---~  188 (228)
                      ..|++++.++|.+.|. .+++.+|||.|           |++|+.|.|.|++||+.|      ..++|++||+++.   .
T Consensus        18 ~~vi~lt~~nF~~~v~-~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           18 TGVITVTADNYPLLSR-GVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TSEEECCTTTHHHHTT-CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             CCCEECCHHHHHHHHc-ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            4699999999998765 33456888887           779999999999999987      4699999999985   5


Q ss_pred             CCCCCCCCcEEEEEECCEEE
Q psy14385        189 PNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       189 ~~y~v~~LPTllvYk~G~~v  208 (228)
                      ..|+++++|||++|++|...
T Consensus        97 ~~~~I~siPtl~~F~~g~~~  116 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESN  116 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGG
T ss_pred             HHcCCCCCCEEEEEcCCCCC
Confidence            88999999999999999643

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.6e-11  Score=92.24  Aligned_cols=83  Identities=18%  Similarity=0.254  Sum_probs=70.3

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      ..+.|.+++.++|.+.+. .    .|||+|    |++|+.+.+.|.+++++|+  ++.|++|+.+..   ...|++.++|
T Consensus         5 ~~~~v~~l~~~~f~~~~~-~----~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   79 (126)
T 1x5e_A            5 SSGNVRVITDENWRELLE-G----DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALP   79 (126)
T ss_dssp             CCCSEEECCTTTHHHHTS-S----EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCCccEEecHHHHHHHhC-C----CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccC
Confidence            457799999999986542 2    377777    9999999999999999997  699999999874   4789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+ +.++.|..
T Consensus        80 t~~~~~~G~-~~~~~G~~   96 (126)
T 1x5e_A           80 TIYHCKDGE-FRRYQGPR   96 (126)
T ss_dssp             EEEEEETTE-EEECCSCC
T ss_pred             EEEEEeCCe-EEEeecCC
Confidence            999999999 47788864

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.22  E-value=1.6e-11  Score=93.99  Aligned_cols=85  Identities=16%  Similarity=0.098  Sum_probs=71.1

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC------CCcEEEEEeCCCC---CCCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF------PTTKFIKSISTTC---IPNYPDK  194 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky------p~~KFvkI~ad~~---~~~y~v~  194 (228)
                      -+.|.+++.++|...+.+.+  .+|+|+|    |++|+.+.+.|.+||.+|      +.+.|++||.+..   ...|++.
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~--~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~   91 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPE--KDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS   91 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTT--CEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCC
T ss_pred             CCceEECChhhHHHHHhCCC--CCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCc
Confidence            45789999999999886433  5888888    999999999999999864      4699999999874   5889999


Q ss_pred             CCcEEEEEECCEEE--eEEeCc
Q psy14385        195 NLPTLFIYFEGKMQ--SQMVGP  214 (228)
Q Consensus       195 ~LPTllvYk~G~~v--~~lvG~  214 (228)
                      ++||+++|++|..+  ..+.|.
T Consensus        92 ~~Pt~~~~~~g~~~~~~~~~G~  113 (127)
T 3h79_A           92 GFPTMRYYTRIDKQEPFEYSGQ  113 (127)
T ss_dssp             SSSEEEEECSSCSSSCEECCSC
T ss_pred             cCCEEEEEeCCCCCCceEecCC
Confidence            99999999999765  345554

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.18  E-value=1.2e-12  Score=99.49  Aligned_cols=88  Identities=26%  Similarity=0.448  Sum_probs=75.8

Q ss_pred             CCCceEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        127 RFGRVLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       127 ~fG~V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      ..|.+.+| +.++|...+..+. .+.+|||+|    |++|+.+.+.|.+++.+|+++.|+.|+.+..   ...|++.++|
T Consensus        12 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~P   91 (130)
T 1wmj_A           12 EEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMP   91 (130)
T ss_dssp             SCSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSC
T ss_pred             cCcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccc
Confidence            45678999 5688988887631 235788888    9999999999999999999999999999874   4789999999


Q ss_pred             EEEEEECCEEEeEEeCc
Q psy14385        198 TLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~  214 (228)
                      |+++|++|+.+.++.|.
T Consensus        92 t~~~~~~g~~~~~~~g~  108 (130)
T 1wmj_A           92 TFLFIKDGAEADKVVGA  108 (130)
T ss_dssp             CCCBCTTTTCCBCCCTT
T ss_pred             eEEEEeCCeEEEEEeCC
Confidence            99999999999998885

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.18  E-value=1.1e-10  Score=91.12  Aligned_cols=82  Identities=18%  Similarity=0.117  Sum_probs=68.5

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCC--Cc
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKN--LP  197 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~--LP  197 (228)
                      ++.-|.+++.++|...+ +++  .+|+|+|   |++|+.+.+.|+++|++|. .++|+++|+++.   +..|++++  +|
T Consensus         4 ~~plv~~~t~~~f~~~~-~~~--~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iP   80 (133)
T 2djk_A            4 GSPLIGEIGPETYSDYM-SAG--IPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFP   80 (133)
T ss_dssp             SCCCSEECCHHHHHHHH-HTT--SCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSS
T ss_pred             ccCceeccChHHHHHHh-cCC--CCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCC
Confidence            45568899999998765 332  5788888   9999999999999999995 699999999974   57999999  99


Q ss_pred             EEEEEEC--CEEEeEEe
Q psy14385        198 TLFIYFE--GKMQSQMV  212 (228)
Q Consensus       198 TllvYk~--G~~v~~lv  212 (228)
                      |+++|++  |+. ..++
T Consensus        81 tl~i~~~~~g~~-~~~~   96 (133)
T 2djk_A           81 AFAIQEVAKNQK-FPFD   96 (133)
T ss_dssp             EEEEECTTTCCB-CCCC
T ss_pred             EEEEEecCcCcc-cCCC
Confidence            9999998  766 3554

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.80  E-value=2.2e-12  Score=93.55  Aligned_cols=85  Identities=25%  Similarity=0.469  Sum_probs=73.2

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC---CCCCCCCCCCcEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT---CIPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~---~~~~y~v~~LPTllvY  202 (228)
                      |.+++.++|...+.+.+  .+|||+|    |+.|+.+.+.|.+++.+|+ ++.|+.++.+.   ....|++.++||+++|
T Consensus         3 v~~l~~~~~~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSD--KPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            66788899988775443  5788888    9999999999999999997 69999999886   3588999999999999


Q ss_pred             ECCEEEeEEeCcccc
Q psy14385        203 FEGKMQSQMVGPDEF  217 (228)
Q Consensus       203 k~G~~v~~lvG~~~~  217 (228)
                      ++|+.+.++.|....
T Consensus        81 ~~g~~~~~~~g~~~~   95 (106)
T 2yj7_A           81 KNGQVVDRLVGAQPK   95 (106)
Confidence            999999998887643

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.14  E-value=1.1e-10  Score=97.30  Aligned_cols=84  Identities=14%  Similarity=0.193  Sum_probs=73.7

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll  200 (228)
                      +.|..++..+|...+.+.   .+|||+|    |++|+.+.+.|.+++++|+ .++|++|+++..   ...|++.++||++
T Consensus        97 ~~v~~l~~~~f~~~~~~~---~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  173 (210)
T 3apq_A           97 PEIITLERREFDAAVNSG---ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF  173 (210)
T ss_dssp             TTSEECCHHHHHHHHHHS---CCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CceEEecHHHHHHHHccC---CcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEE
Confidence            457889999999988543   4788888    9999999999999999996 499999999874   4789999999999


Q ss_pred             EEECCEEEeEEeCcc
Q psy14385        201 IYFEGKMQSQMVGPD  215 (228)
Q Consensus       201 vYk~G~~v~~lvG~~  215 (228)
                      +|++|+.+.++.|..
T Consensus       174 ~~~~G~~~~~~~G~~  188 (210)
T 3apq_A          174 IFRSGMAAVKYNGDR  188 (210)
T ss_dssp             EECTTSCCEECCSCC
T ss_pred             EEECCCceeEecCCC
Confidence            999999999999854

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.14  E-value=7.9e-11  Score=90.31  Aligned_cols=79  Identities=18%  Similarity=0.264  Sum_probs=66.2

Q ss_pred             hhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEE
Q psy14385        136 GDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKM  207 (228)
Q Consensus       136 ~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~  207 (228)
                      ..++...+...  +.+|||+|    |++|+.+.+.|.+++++|+ ++.|++|+.+..   ...|++.++||+++|++|+.
T Consensus        31 ~~~~~~~~~~~--~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~  108 (128)
T 3ul3_B           31 GSNIINGVNMK--NTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTM  108 (128)
T ss_dssp             CCSSSSBTTSC--CSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             CccHHHHHHcc--CCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEE
Confidence            34444444333  46889988    9999999999999999996 699999999874   57899999999999999999


Q ss_pred             EeEEeCccc
Q psy14385        208 QSQMVGPDE  216 (228)
Q Consensus       208 v~~lvG~~~  216 (228)
                      +.++.|...
T Consensus       109 ~~~~~G~~~  117 (128)
T 3ul3_B          109 LARKDHFVS  117 (128)
T ss_dssp             EEEESSCCC
T ss_pred             EEEecCCCC
Confidence            999998653

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.14  E-value=2.2e-11  Score=93.14  Aligned_cols=81  Identities=20%  Similarity=0.274  Sum_probs=69.1

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---CCCCCCCCC
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---IPNYPDKNL  196 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---~~~y~v~~L  196 (228)
                      .-+.|..++.++|...+.+.  +.+|||+|    |++|+.+.+.|.+++.+|.   .+.|+++|.+..   ...|++.++
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~--~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~   82 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDP--KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGF   82 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCT--TSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSS
T ss_pred             CCCceEEEcCCCHHHHhccC--CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcC
Confidence            45789999999998877543  36888988    9999999999999999985   699999998763   478999999


Q ss_pred             cEEEEEECCEEEe
Q psy14385        197 PTLFIYFEGKMQS  209 (228)
Q Consensus       197 PTllvYk~G~~v~  209 (228)
                      ||+++|++|..+.
T Consensus        83 Pt~~~~~~g~~~~   95 (133)
T 2dj3_A           83 PTIYFAPSGDKKN   95 (133)
T ss_dssp             SEEEEECTTCTTS
T ss_pred             CEEEEEeCCCccc
Confidence            9999999987654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.12  E-value=4.6e-11  Score=89.70  Aligned_cols=85  Identities=21%  Similarity=0.305  Sum_probs=69.8

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC------CcEEEEEeCCCC-CCCCCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP------TTKFIKSISTTC-IPNYPDKNL  196 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp------~~KFvkI~ad~~-~~~y~v~~L  196 (228)
                      -+.|..++.++|...+...  +.+|||+|    |++|+.+.+.|.++|++|+      .+.|+++|.+.. ... ++.++
T Consensus         6 ~~~v~~l~~~~f~~~v~~~--~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~-~v~~~   82 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVLDD--TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-EIQGF   82 (121)
T ss_dssp             SCSSEECCTTTTTTSSSCT--TSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS-CCSSS
T ss_pred             CCCeEEecccCHHHHhhcC--CCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccccc-ccCcC
Confidence            3578899999998877433  35788888    9999999999999999997      599999999863 234 99999


Q ss_pred             cEEEEEECCEE--EeEEeCcc
Q psy14385        197 PTLFIYFEGKM--QSQMVGPD  215 (228)
Q Consensus       197 PTllvYk~G~~--v~~lvG~~  215 (228)
                      ||+++|++|..  +.++.|..
T Consensus        83 Pt~~~~~~~~~~~~~~~~G~~  103 (121)
T 2djj_A           83 PTIKLYPAGAKGQPVTYSGSR  103 (121)
T ss_dssp             SEEEEECSSCTTSCCCCCCCS
T ss_pred             CeEEEEeCcCCCCceEecCCC
Confidence            99999999854  66777754

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.11  E-value=1.8e-10  Score=86.81  Aligned_cols=85  Identities=13%  Similarity=0.147  Sum_probs=67.5

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC-------CCCCCCCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT-------CIPNYPDKNL  196 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~-------~~~~y~v~~L  196 (228)
                      ..+..++.++|...+.+.   .+|||+|    |++|+.+.+.|.+++++++ .+.|+.++...       ....|++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (118)
T 1zma_A           12 KDLEVTTVVRAQEALDKK---ETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTV   88 (118)
T ss_dssp             TTSEECCHHHHHHHHHTT---CCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSS
T ss_pred             hhhhcCCHHHHHHHHhCC---CeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCC
Confidence            357788999999887543   4688888    9999999999999999986 45565443221       2367999999


Q ss_pred             cEEEEEECCEEEeEEeCccc
Q psy14385        197 PTLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       197 PTllvYk~G~~v~~lvG~~~  216 (228)
                      ||+++|++|+.+.++.|...
T Consensus        89 Pt~~~~~~G~~~~~~~G~~~  108 (118)
T 1zma_A           89 PGFVHITDGQINVRCDSSMS  108 (118)
T ss_dssp             CEEEEEETTEEEEECCTTCC
T ss_pred             CeEEEEECCEEEEEecCCCC
Confidence            99999999999999998653

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.08  E-value=2.2e-10  Score=106.11  Aligned_cols=87  Identities=20%  Similarity=0.324  Sum_probs=76.7

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|..++.++|...|.+.+.+.+|+|+|    |++|+.+.+.|+++|+++.+ +.|++||++..   +..|++.++||+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~   81 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKI   81 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEE
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEE
Confidence            578999999999996554446888888    99999999999999999976 99999999874   58899999999999


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                      |++|+.+..+.|...
T Consensus        82 ~~~g~~~~~~~G~~~   96 (481)
T 3f8u_A           82 FRDGEEAGAYDGPRT   96 (481)
T ss_dssp             EETTEEEEECCSCSS
T ss_pred             EeCCceeeeecCccC
Confidence            999999999988653

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.05  E-value=3.2e-10  Score=86.16  Aligned_cols=68  Identities=19%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEe--CCC---CCCCCCCCCCcEEEEEE-CCEEEeEEeCccc
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSI--STT---CIPNYPDKNLPTLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~--ad~---~~~~y~v~~LPTllvYk-~G~~v~~lvG~~~  216 (228)
                      +.+|||+|    |++|+.+.+.|.+++++| +++.|+.|+  .+.   ....|++.++||+++|. +|+.+.++.|...
T Consensus        26 ~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~~  104 (126)
T 2l57_A           26 GIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMR  104 (126)
T ss_dssp             SSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESCCC
T ss_pred             CCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCCCC
Confidence            46788888    999999999999999999 689999999  765   35789999999999999 9999999999643

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.04  E-value=4.4e-10  Score=93.68  Aligned_cols=84  Identities=19%  Similarity=0.229  Sum_probs=71.9

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC----cEEEEEeCCCC---CCCCCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT----TKFIKSISTTC---IPNYPDKNL  196 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~----~KFvkI~ad~~---~~~y~v~~L  196 (228)
                      .+.|..++.++|...+.+   +.+|+|+|    |++|+.+.+.|.++|++|.+    +.|++||.+..   ...|++.++
T Consensus        14 ~~~v~~l~~~~~~~~~~~---~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   90 (241)
T 3idv_A           14 ENGVLVLNDANFDNFVAD---KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGY   90 (241)
T ss_dssp             ETTEEEECTTTHHHHHTT---CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCCcEEecccCHHHHHhc---CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcC
Confidence            457999999999988753   25789988    99999999999999998753    89999999874   578999999


Q ss_pred             cEEEEEECCEEEeEEeCcc
Q psy14385        197 PTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       197 PTllvYk~G~~v~~lvG~~  215 (228)
                      ||+++|++|..+. +.|..
T Consensus        91 Pt~~~~~~g~~~~-~~g~~  108 (241)
T 3idv_A           91 PTIKILKKGQAVD-YEGSR  108 (241)
T ss_dssp             SEEEEEETTEEEE-CCSCS
T ss_pred             CEEEEEcCCCccc-ccCcc
Confidence            9999999999884 66654

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.03  E-value=2.3e-10  Score=88.68  Aligned_cols=85  Identities=18%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHH---HHHHHhCCCcEEEEEeCCC-------CCCCCCCCC
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHL---SELAAKFPTTKFIKSISTT-------CIPNYPDKN  195 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L---~~LA~kyp~~KFvkI~ad~-------~~~~y~v~~  195 (228)
                      +..+ +.++|...+.+.. +.+|||+|    |++|+.|.+.+   ..++++|+++.|++|+.+.       ....|++.+
T Consensus        13 f~~~~~~~~~~~~l~~~~-~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~   91 (134)
T 2fwh_A           13 FTQIKTVDELNQALVEAK-GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG   91 (134)
T ss_dssp             CEECCSHHHHHHHHHHHT-TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCS
T ss_pred             cEEecCHHHHHHHHHHhc-CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCC
Confidence            4456 5677877776542 46888888    99999999999   9999999999999999953       247899999


Q ss_pred             CcEEEEE-ECCEEE--eEEeCccc
Q psy14385        196 LPTLFIY-FEGKMQ--SQMVGPDE  216 (228)
Q Consensus       196 LPTllvY-k~G~~v--~~lvG~~~  216 (228)
                      +||+++| ++|+.+  .+++|...
T Consensus        92 ~Pt~~~~d~~G~~v~~~~~~G~~~  115 (134)
T 2fwh_A           92 LPTILFFDGQGQEHPQARVTGFMD  115 (134)
T ss_dssp             SSEEEEECTTSCBCGGGCBCSCCC
T ss_pred             CCEEEEECCCCCEeeeeeeeeccC
Confidence            9999999 999998  78888753

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.00  E-value=9.5e-10  Score=91.63  Aligned_cols=84  Identities=20%  Similarity=0.314  Sum_probs=70.9

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCCC---CCCCCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTTC---IPNYPDKNL  196 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~~---~~~y~v~~L  196 (228)
                      -..+..++.++|...+.+.   .+|+|+|    |++|+.+.+.|..+|.+|    +.+.|++||++..   ...|++.++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~  205 (241)
T 3idv_A          129 PEVTLVLTKENFDEVVNDA---DIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGY  205 (241)
T ss_dssp             CCSSEECCTTTHHHHHHHC---SEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSS
T ss_pred             cccceeccHHHHHHhhccC---CeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCccc
Confidence            3457788999999888654   4788888    999999999999999986    4599999999874   588999999


Q ss_pred             cEEEEEECCEEEeEEeCcc
Q psy14385        197 PTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       197 PTllvYk~G~~v~~lvG~~  215 (228)
                      ||+++|++|+.+. +.|..
T Consensus       206 Pt~~~~~~g~~~~-~~g~~  223 (241)
T 3idv_A          206 PTLKIFRKGRPYD-YNGPR  223 (241)
T ss_dssp             SEEEEEETTEEEE-CCSCC
T ss_pred             CEEEEEECCeEEE-ecCCC
Confidence            9999999999887 66654

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.99  E-value=6e-10  Score=85.24  Aligned_cols=78  Identities=18%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe-----------ccchHHHHHHHHHHHHhCC-CcEEEEEeC-------CCC---
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF-----------IPLCSLINNHLSELAAKFP-TTKFIKSIS-------TTC---  187 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf-----------~~~C~~l~~~L~~LA~kyp-~~KFvkI~a-------d~~---  187 (228)
                      .+...+.++|...+.+++ +.+|||+|           |++|+.+.+.|.+++.+|+ +++|++|++       +..   
T Consensus         6 ~v~~~~~~~~~~~~~~~~-~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHN-GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEEESHHHHHHHHHTTT-TSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             eEEeccHHHHHHHHHHhC-CCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHH
Confidence            344558899999998643 46889988           7899999999999999996 799999999       443   


Q ss_pred             CCCCCCCCCcEEEEEECCEEE
Q psy14385        188 IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       188 ~~~y~v~~LPTllvYk~G~~v  208 (228)
                      ...|++.++||+++|++|..+
T Consensus        85 ~~~~~i~~~Pt~~~~~~~~~~  105 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGTPQKL  105 (123)
T ss_dssp             HHHHCCCSSSEEEETTSSCEE
T ss_pred             HHHCCCCeeCEEEEEcCCceE
Confidence            367999999999999995444

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.98  E-value=1.5e-09  Score=89.09  Aligned_cols=76  Identities=12%  Similarity=0.135  Sum_probs=61.9

Q ss_pred             hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCC---CCCCcEEEEEEC-C
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYP---DKNLPTLFIYFE-G  205 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~---v~~LPTllvYk~-G  205 (228)
                      +++...+... ++.+|||.|    |++|+.+.|.|.+|+.+|+++.|++|+.++.   +..|.   +.++||+++|++ |
T Consensus        43 ~~~~~~l~~~-~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G  121 (167)
T 1z6n_A           43 SALTERLQRI-ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEF  121 (167)
T ss_dssp             HHHHHHHHTC-CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTC
T ss_pred             HHHHHHHHHh-CCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCC
Confidence            4455556543 346788888    9999999999999999999999999998763   46676   999999999998 4


Q ss_pred             EEEeEEeC
Q psy14385        206 KMQSQMVG  213 (228)
Q Consensus       206 ~~v~~lvG  213 (228)
                      +.+.++.|
T Consensus       122 ~~~~~~g~  129 (167)
T 1z6n_A          122 NLLGRFVE  129 (167)
T ss_dssp             CEEEEEES
T ss_pred             CEEEEEcC
Confidence            88887744

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.96  E-value=7.7e-10  Score=91.88  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-----CcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-----TTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-----~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      +..++.+.|.. +.+.+ +.+++|+|    |++|+.+.+.|.++|.+|+     ++.|++|+++..   ...|++.++||
T Consensus       118 ~~~l~~~~~~~-~~~~~-~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt  195 (226)
T 1a8l_A          118 ETNLMDETKQA-IRNID-QDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPK  195 (226)
T ss_dssp             CCCCCHHHHHH-HTTCC-SCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCE
T ss_pred             CCCCCHHHHHH-HHhcC-CCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCe
Confidence            44567666654 43332 33447777    9999999999999999997     799999999873   57899999999


Q ss_pred             EEEEECCEEEeEEeCccc
Q psy14385        199 LFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       199 llvYk~G~~v~~lvG~~~  216 (228)
                      +++|++|+.+..+.|...
T Consensus       196 ~~~~~~G~~~~~~~G~~~  213 (226)
T 1a8l_A          196 IVIQVNGEDRVEFEGAYP  213 (226)
T ss_dssp             EEEEETTEEEEEEESCCC
T ss_pred             EEEEeCCceeEEEcCCCC
Confidence            999999999999999754

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.96  E-value=8.2e-10  Score=97.88  Aligned_cols=85  Identities=12%  Similarity=0.214  Sum_probs=68.4

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCC-----CCCCCCCCCC
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTT-----CIPNYPDKNL  196 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~-----~~~~y~v~~L  196 (228)
                      .-+.|++++.++|.+.|.+.  +.+|+|.|    |++|+.+.+.|.++|.+|++ +.|+.|+++.     .+..|++.++
T Consensus        15 ~~~~vv~lt~~~f~~~i~~~--~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~   92 (298)
T 3ed3_A           15 SDPHISELTPKSFDKAIHNT--NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGF   92 (298)
T ss_dssp             SCTTCEECCHHHHHHHHTSS--SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBS
T ss_pred             CCCCeEEeCHHHHHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCcc
Confidence            34679999999999998544  35788888    99999999999999999975 8999998873     3578999999


Q ss_pred             cEEEEEECCEEEeEEeC
Q psy14385        197 PTLFIYFEGKMQSQMVG  213 (228)
Q Consensus       197 PTllvYk~G~~v~~lvG  213 (228)
                      ||+++|++|+.+.+..|
T Consensus        93 Pt~~~~~~g~~v~~~~g  109 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPI  109 (298)
T ss_dssp             SEEEEEECCCC------
T ss_pred             ceEEEEECCceeecccc
Confidence            99999999986554444

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.92  E-value=2e-09  Score=100.47  Aligned_cols=85  Identities=14%  Similarity=0.194  Sum_probs=73.9

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      -+.|..++.++|...+.+   +.+|+|+|    |++|+.+.+.|+++|.++.  +++|++||++..   ...|++.++||
T Consensus        13 ~~~v~~l~~~~f~~~~~~---~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt   89 (504)
T 2b5e_A           13 DSAVVKLATDSFNEYIQS---HDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS   89 (504)
T ss_dssp             TSSCEECCTTTHHHHHTT---CSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCcEECCHHHHHHHHhc---CCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCE
Confidence            456999999999998753   25788888    9999999999999999997  399999999874   58899999999


Q ss_pred             EEEEECCEE--EeEEeCcc
Q psy14385        199 LFIYFEGKM--QSQMVGPD  215 (228)
Q Consensus       199 llvYk~G~~--v~~lvG~~  215 (228)
                      +++|++|..  +..+.|..
T Consensus        90 ~~~~~~g~~~~~~~~~G~~  108 (504)
T 2b5e_A           90 LKIFKNSDVNNSIDYEGPR  108 (504)
T ss_dssp             EEEEETTCTTCEEECCSCC
T ss_pred             EEEEeCCccccceeecCCC
Confidence            999999997  88888864

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.91  E-value=1.9e-09  Score=97.71  Aligned_cols=85  Identities=16%  Similarity=0.271  Sum_probs=69.6

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----C---CcEEEEEeCCCC---CCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----P---TTKFIKSISTTC---IPNYPD  193 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p---~~KFvkI~ad~~---~~~y~v  193 (228)
                      .+.|..++.++|...+.+.   .+|+|+|    |++|+.+.+.|+++|.++    |   .+.|++||++..   +..|++
T Consensus         4 ~~~v~~l~~~~f~~~~~~~---~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v   80 (382)
T 2r2j_A            4 GSEITSLDTENIDEILNNA---DVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI   80 (382)
T ss_dssp             ----CBCCTTTHHHHHHHC---SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTC
T ss_pred             CCceEECCHHHHHHHHhcC---CeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCC
Confidence            4568899999999877543   4788888    999999999999999986    2   399999999874   478999


Q ss_pred             CCCcEEEEEECCEEEeE-EeCcc
Q psy14385        194 KNLPTLFIYFEGKMQSQ-MVGPD  215 (228)
Q Consensus       194 ~~LPTllvYk~G~~v~~-lvG~~  215 (228)
                      .++||+++|++|..+.+ +.|..
T Consensus        81 ~~~Pt~~~f~~G~~~~~~~~G~~  103 (382)
T 2r2j_A           81 SKYPTLKLFRNGMMMKREYRGQR  103 (382)
T ss_dssp             CEESEEEEEETTEEEEEECCSCC
T ss_pred             CcCCEEEEEeCCcEeeeeecCcc
Confidence            99999999999999874 77754

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.90  E-value=2.7e-09  Score=83.57  Aligned_cols=64  Identities=16%  Similarity=0.186  Sum_probs=52.4

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCC------cEEEEEeCCC-----CCCCCCCCCCcEEEEEECCEEEeEEeCc
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPT------TKFIKSISTT-----CIPNYPDKNLPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~------~KFvkI~ad~-----~~~~y~v~~LPTllvYk~G~~v~~lvG~  214 (228)
                      ..|+|.|    |++|+.|.+   .++..|+.      +.++++|++.     .+..|++.++|||++|++|+.+.+++|+
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~---~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~   95 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDA---EIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGY   95 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHH---HTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHHHHH---HHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCC
Confidence            4788888    999999996   45555543      5788888775     3578999999999999999999999998


Q ss_pred             cc
Q psy14385        215 DE  216 (228)
Q Consensus       215 ~~  216 (228)
                      ..
T Consensus        96 ~~   97 (116)
T 3dml_A           96 PG   97 (116)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.89  E-value=2.4e-09  Score=90.87  Aligned_cols=80  Identities=11%  Similarity=0.073  Sum_probs=68.4

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCC-----CCCCCCCC
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTT-----CIPNYPDK  194 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~-----~~~~y~v~  194 (228)
                      .+.|..++.++|...+.+.+  .+|||+|    |++|+.+.+.|.++|++|+    .++|++|+++.     ....|++.
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~--~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~   88 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSR--SAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIP   88 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCS--SEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CCCceeCChhhHHHHHhhCC--CeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCC
Confidence            35689999999999997553  5788888    9999999999999999997    59999999843     35789999


Q ss_pred             CCcEEEEEECCEEEe
Q psy14385        195 NLPTLFIYFEGKMQS  209 (228)
Q Consensus       195 ~LPTllvYk~G~~v~  209 (228)
                      ++||+++|++|..++
T Consensus        89 ~~Pt~~~~~~g~~~~  103 (244)
T 3q6o_A           89 GFPTVRFFXAFTXNG  103 (244)
T ss_dssp             SSSEEEEECTTCCSS
T ss_pred             ccCEEEEEeCCCcCC
Confidence            999999999966543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.88  E-value=2.6e-09  Score=99.74  Aligned_cols=85  Identities=20%  Similarity=0.260  Sum_probs=72.4

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC-CCCCCCCCCcEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC-IPNYPDKNLPTL  199 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~-~~~y~v~~LPTl  199 (228)
                      +.|..++.++|...+.+.+  .+|||+|    |++|+.|.+.|.+||.+|+    .+.|+++|++.. ...|.+.++||+
T Consensus       358 ~~v~~l~~~~f~~~v~~~~--k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~~~v~~~Pt~  435 (504)
T 2b5e_A          358 SSVFQLVGKNHDEIVNDPK--KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTI  435 (504)
T ss_dssp             CSEEEECTTTHHHHHHCTT--CCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSEE
T ss_pred             ccceecccccHHHhhccCC--CCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccccCCceecCeE
Confidence            6799999999999887543  5788888    9999999999999999986    799999998753 234999999999


Q ss_pred             EEEECCEE--EeEEeCcc
Q psy14385        200 FIYFEGKM--QSQMVGPD  215 (228)
Q Consensus       200 lvYk~G~~--v~~lvG~~  215 (228)
                      ++|++|+.  +..+.|..
T Consensus       436 ~~~~~G~~~~~~~~~G~~  453 (504)
T 2b5e_A          436 VLYPGGKKSESVVYQGSR  453 (504)
T ss_dssp             EEECCTTSCCCCBCCSCC
T ss_pred             EEEeCCceecceEecCCC
Confidence            99999987  66677754

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.88  E-value=7.5e-09  Score=72.59  Aligned_cols=61  Identities=20%  Similarity=0.340  Sum_probs=53.1

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC---CCCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT---CIPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~---~~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      .+||.|    |++|+.+.+.|++++++|+ ++.|+.+|.++   ....|++.++||+++  +|+.  ++.|..
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~   72 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAP   72 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSS
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCC
Confidence            456666    9999999999999999998 79999999876   358899999999999  9987  677753

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=98.87  E-value=1.8e-09  Score=82.70  Aligned_cols=79  Identities=15%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             hhHHHHHHhc-CCCceEEEEe----ccchHHHHHHHH--HHHHhC-CCcEEEEEeC---CCC---CCCCCC---CCCcEE
Q psy14385        137 DTYVQEVNNA-GEGIWVVLHF----IPLCSLINNHLS--ELAAKF-PTTKFIKSIS---TTC---IPNYPD---KNLPTL  199 (228)
Q Consensus       137 edf~~eV~~a-~~~~~VVVhf----~~~C~~l~~~L~--~LA~ky-p~~KFvkI~a---d~~---~~~y~v---~~LPTl  199 (228)
                      .+|.+.+..+ ..+.+|||+|    |++|+.+.+.|.  .++.+| .++.|++|+.   +..   ...|++   .++||+
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~   95 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAV   95 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEE
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceE
Confidence            4454444421 1136889988    999999999999  999998 6799999999   553   478999   999999


Q ss_pred             EEE-ECCEEEeEEeCcc
Q psy14385        200 FIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       200 lvY-k~G~~v~~lvG~~  215 (228)
                      ++| ++|+.+....|..
T Consensus        96 ~~~d~~G~~~~~~~g~~  112 (133)
T 3fk8_A           96 VVVNSDGKVRYTTKGGE  112 (133)
T ss_dssp             EEECTTSCEEEECCSCT
T ss_pred             EEECCCCCEEEEecCCc
Confidence            999 9999999998843

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.81  E-value=1.7e-08  Score=89.90  Aligned_cols=85  Identities=15%  Similarity=0.179  Sum_probs=71.6

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC---cEEEEEeCCCC-CCCCCCCCCcEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT---TKFIKSISTTC-IPNYPDKNLPTLF  200 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~---~KFvkI~ad~~-~~~y~v~~LPTll  200 (228)
                      +.|..++.++|...+.+.+  ..|+|.|    |++|+.+.+.|.+||.+|.+   +.|+++|++.. ...|++.++||++
T Consensus       249 ~~v~~l~~~~f~~~~~~~~--k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~Pt~~  326 (361)
T 3uem_A          249 QPVKVLVGKNFEDVAFDEK--KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLK  326 (361)
T ss_dssp             SSSEEECTTTHHHHHTCTT--CEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCBCSSCCCCSSSEEE
T ss_pred             CCcEEeecCchhhhcccCC--CcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccchhhcCCcccCeEE
Confidence            5688899999998885443  5788888    99999999999999999964   89999998875 5889999999999


Q ss_pred             EEECC--EEEeEEeCcc
Q psy14385        201 IYFEG--KMQSQMVGPD  215 (228)
Q Consensus       201 vYk~G--~~v~~lvG~~  215 (228)
                      +|.+|  ..+..+.|..
T Consensus       327 ~~~~~~~~~~~~~~G~~  343 (361)
T 3uem_A          327 FFPASADRTVIDYNGER  343 (361)
T ss_dssp             EECSSSSCCCEECCSCS
T ss_pred             EEECCCCcceeEecCCC
Confidence            99665  5667777754

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.80  E-value=1.4e-08  Score=93.99  Aligned_cols=108  Identities=21%  Similarity=0.289  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHh--ccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---C
Q psy14385        106 RVLQEYRRKRIAEMKAMAE--KSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---T  176 (228)
Q Consensus       106 ~~Le~yR~kRl~ELk~~~~--~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~  176 (228)
                      .|++.|...++....+...  ...-+.|..++..+|...+.+.  +.+|+|+|    |++|+.+.+.|.+||.+|.   .
T Consensus       327 ~f~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~--~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~  404 (481)
T 3f8u_A          327 RFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNE--NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPN  404 (481)
T ss_dssp             HHHHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCT--TCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSS
T ss_pred             HHHHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHhhcC--CCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCC
Confidence            4555555544433322111  1224568888999999888653  36899999    9999999999999999996   4


Q ss_pred             cEEEEEeCCC--CCCCCCCCCCcEEEEEECCEE--EeEEeCcc
Q psy14385        177 TKFIKSISTT--CIPNYPDKNLPTLFIYFEGKM--QSQMVGPD  215 (228)
Q Consensus       177 ~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~--v~~lvG~~  215 (228)
                      +.|++||++.  .+..|++.++||+++|++|..  +..+.|..
T Consensus       405 v~~~~id~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~  447 (481)
T 3f8u_A          405 IVIAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGR  447 (481)
T ss_dssp             EEEEEEETTSSCCCTTCCCCSSSEEEEECTTCTTSCEECCSCC
T ss_pred             EEEEEEECCchhhHhhCCCcccCEEEEEeCCCeEeeeEeCCCC
Confidence            8999999986  467899999999999999986  56677754

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=2.1e-09  Score=81.61  Aligned_cols=85  Identities=16%  Similarity=0.236  Sum_probs=66.8

Q ss_pred             EEeChhhHHHHHHhc-CCCceEEEEe----ccchHHHHHHH---HHHHHhC-CCcEEEEEeCCC-----CCCCCCCCCCc
Q psy14385        132 LEINGDTYVQEVNNA-GEGIWVVLHF----IPLCSLINNHL---SELAAKF-PTTKFIKSISTT-----CIPNYPDKNLP  197 (228)
Q Consensus       132 ~eIs~edf~~eV~~a-~~~~~VVVhf----~~~C~~l~~~L---~~LA~ky-p~~KFvkI~ad~-----~~~~y~v~~LP  197 (228)
                      ..++..+|.+.+..+ .++.+|||.|    |++|+.+.+.+   ..++..+ ..+.|+.|+.+.     ....|++.++|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~P   88 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP   88 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCC
Confidence            345667777777532 1135788888    99999999999   7777765 468899999873     35789999999


Q ss_pred             EEEEE-ECCEEEeEEeCccc
Q psy14385        198 TLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvY-k~G~~v~~lvG~~~  216 (228)
                      |+++| ++|+.+.++.|...
T Consensus        89 t~~~~d~~G~~~~~~~G~~~  108 (130)
T 2kuc_A           89 TLLFINSSGEVVYRLVGAED  108 (130)
T ss_dssp             EEEEECTTSCEEEEEESCCC
T ss_pred             EEEEECCCCcEEEEecCCCC
Confidence            99999 79999999999753

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.80  E-value=9.9e-09  Score=100.64  Aligned_cols=84  Identities=14%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC---CCCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT---CIPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~---~~~~y~v~~LPTllv  201 (228)
                      .|..++.++|...+.+   +.+|+|+|    |++|+.|.+.|+++|+++. .++|++||++.   ...+|++.++||+++
T Consensus       117 ~v~~l~~~~f~~~i~~---~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  193 (780)
T 3apo_A          117 EIITLERREFDAAVNS---GELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI  193 (780)
T ss_dssp             TEEECCHHHHHHHHTS---SSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEE
T ss_pred             ceeeechHhHHhhhcC---CCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEE
Confidence            5889999999999943   25788888    9999999999999999996 49999999986   358899999999999


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                      |++|..+..+.|...
T Consensus       194 ~~~g~~~~~~~G~~~  208 (780)
T 3apo_A          194 FRSGMAAVKYNGDRS  208 (780)
T ss_dssp             ECTTSCCEECCSCSC
T ss_pred             EeCCcEeeEecCCCC
Confidence            999999889988754

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.79  E-value=7.7e-09  Score=72.52  Aligned_cols=60  Identities=20%  Similarity=0.291  Sum_probs=52.3

Q ss_pred             EEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        152 VVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       152 VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      +||.|    |++|+.+.+.|++++++|+ ++.|+.++.+..   ...|++.++||+++  +|+.  +++|..
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~   71 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAP   71 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSS
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCC
Confidence            35555    9999999999999999998 799999999863   58899999999999  9987  778863

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.77  E-value=1.2e-08  Score=88.59  Aligned_cols=83  Identities=13%  Similarity=0.243  Sum_probs=68.9

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe-c--cchHHHHHHHHHHHHhC---CCcEEEEEeCCC--C------CCCCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF-I--PLCSLINNHLSELAAKF---PTTKFIKSISTT--C------IPNYPDK  194 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf-~--~~C~~l~~~L~~LA~ky---p~~KFvkI~ad~--~------~~~y~v~  194 (228)
                      ..|.+++..+|...|. .+  .+|+|.| .  |-|. |.|.|++||..|   +.+.|++||+++  |      ...|+|.
T Consensus         5 ~~v~~Lt~~nF~~~i~-~~--~~vlV~FyA~~pWCg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~   80 (240)
T 2qc7_A            5 KGALPLDTVTFYKVIP-KS--KFVLVKFDTQYPYGE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   80 (240)
T ss_dssp             TTCEECCTTHHHHHGG-GC--SEEEEEECCSSCCSH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred             CCceECCHHHHHHHHc-CC--CCEEEEEeCCCCCCc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence            4588999999998664 32  5889999 6  9999 999999999997   579999999765  4      3679999


Q ss_pred             --CCcEEEEEECCE--EEeEEeCcc
Q psy14385        195 --NLPTLFIYFEGK--MQSQMVGPD  215 (228)
Q Consensus       195 --~LPTllvYk~G~--~v~~lvG~~  215 (228)
                        ++|||++|++|+  .+..+.|..
T Consensus        81 ~~~~PTl~~f~~G~~~~~~~y~G~~  105 (240)
T 2qc7_A           81 KESYPVFYLFRDGDFENPVPYTGAV  105 (240)
T ss_dssp             GGGCSEEEEEETTCSSCCEECCSCS
T ss_pred             CCCCCEEEEEeCCCcCcceeecCCC
Confidence              999999999998  456777754

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.73  E-value=2.6e-08  Score=90.22  Aligned_cols=83  Identities=13%  Similarity=0.065  Sum_probs=68.3

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHH------HHHHHHHHhCC--CcEEEEEeCCCC---CCCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLIN------NHLSELAAKFP--TTKFIKSISTTC---IPNYPD  193 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~------~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v  193 (228)
                      +.|.+++.++|.+.|.+.   .+|+|+|    |++|.+..      +.++.+|..+.  .++|++||++..   +..|+|
T Consensus        13 ~~v~~lt~~~f~~~i~~~---~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V   89 (367)
T 3us3_A           13 DRVINVNAKNYKNVFKKY---EVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL   89 (367)
T ss_dssp             CCCEECCTTTHHHHHHHC---SEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTC
T ss_pred             CccEECCHHHHHHHHhhC---CeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCC
Confidence            468999999999988654   4788888    98875544      68899998874  599999999874   588999


Q ss_pred             CCCcEEEEEECCEEEeEEeCcc
Q psy14385        194 KNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       194 ~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      +++||+++|++|+.+ .+.|..
T Consensus        90 ~~~PTl~~f~~G~~~-~y~G~~  110 (367)
T 3us3_A           90 TEEDSIYVFKEDEVI-EYDGEF  110 (367)
T ss_dssp             CSTTEEEEEETTEEE-ECCSCC
T ss_pred             CcCceEEEEECCcEE-EeCCCC
Confidence            999999999999875 666654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.73  E-value=1.4e-08  Score=90.73  Aligned_cols=82  Identities=11%  Similarity=0.121  Sum_probs=68.8

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHH-------HHHHHHhCC--CcEEEEEeCCCC---CCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNH-------LSELAAKFP--TTKFIKSISTTC---IPNYP  192 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~-------L~~LA~kyp--~~KFvkI~ad~~---~~~y~  192 (228)
                      +.|.+++.++|...+.+.   .+|+|+|    |+ |+.+.|.       ++++|+.+.  +++|++||++..   +..|+
T Consensus        11 ~~v~~l~~~~f~~~i~~~---~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~   86 (350)
T 1sji_A           11 DRVVSLTEKNFKQVLKKY---DVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLG   86 (350)
T ss_dssp             CCCEEECHHHHHHHHTTC---SEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHT
T ss_pred             CccEECCHHHHHHHHhhC---CeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcC
Confidence            358899999999888543   5788888    99 9888777       999999885  599999999874   47899


Q ss_pred             CCCCcEEEEEECCEEEeEEeCcc
Q psy14385        193 DKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       193 v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      +.++||+++|++|+ +..+.|..
T Consensus        87 v~~~Pt~~~~~~g~-~~~~~G~~  108 (350)
T 1sji_A           87 FDEEGSLYVLKGDR-TIEFDGEF  108 (350)
T ss_dssp             CCSTTEEEEEETTE-EEEECSCC
T ss_pred             CCccceEEEEECCc-EEEecCCC
Confidence            99999999999999 55778864

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.73  E-value=1.6e-08  Score=84.36  Aligned_cols=83  Identities=11%  Similarity=0.037  Sum_probs=66.9

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      |.+..++.+.|...+. .+ +.++||+|    |++|+.+.+.|+.+|.+|+++.|++++++..   ...|++.++||+++
T Consensus       118 ~~~~~l~~~~~~~~~~-~~-~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  195 (229)
T 2ywm_A          118 QRKPQLSEKTLELLQV-VD-IPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI  195 (229)
T ss_dssp             TTCCSCCHHHHHHHTT-CC-SCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE
T ss_pred             CCccCCCHHHHHHHHh-cC-CCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE
Confidence            3466788888776553 32 34547767    9999999999999999999999999998873   57899999999998


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                        +|+ +.++.|...
T Consensus       196 --~G~-~~~~~G~~~  207 (229)
T 2ywm_A          196 --NKG-VAEFVGAQP  207 (229)
T ss_dssp             --GGG-TEEEESCCC
T ss_pred             --CCE-EEEeeCCCC
Confidence              898 677888653

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.72  E-value=2.1e-08  Score=76.16  Aligned_cols=68  Identities=22%  Similarity=0.435  Sum_probs=59.5

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC----------------------------CCCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT----------------------------CIPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~----------------------------~~~~y~v~  194 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+  ++.|+.|+.+.                            ....|++.
T Consensus        34 gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  113 (145)
T 3erw_A           34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHII  113 (145)
T ss_dssp             TSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcC
Confidence            46888888    9999999999999999998  79999998752                            24779999


Q ss_pred             CCcEEEEE-ECCEEEeEEeCccc
Q psy14385        195 NLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       195 ~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      ++||++++ ++|+++..+.|...
T Consensus       114 ~~P~~~lid~~G~i~~~~~g~~~  136 (145)
T 3erw_A          114 TIPTSFLLNEKGEIEKTKIGPMT  136 (145)
T ss_dssp             EESEEEEECTTCCEEEEEESCCC
T ss_pred             ccCeEEEEcCCCcEEEEEcCCcC
Confidence            99999999 89999999999753

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.71  E-value=1.7e-08  Score=99.02  Aligned_cols=85  Identities=12%  Similarity=0.077  Sum_probs=73.8

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      .+.+.+++.++|...+.+.+  .+|||.|    |++|+.+.+.|++||++|. ++.|++|+++..   ...|++.++||+
T Consensus       656 ~~~v~~l~~~~~~~~~~~~~--~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~  733 (780)
T 3apo_A          656 PQASIDLTPQTFNEKVLQGK--THWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV  733 (780)
T ss_dssp             CCCSEEECHHHHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccccCCHHHHHHHHhcCC--CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEE
Confidence            34578889999988776553  5788888    9999999999999999994 799999999874   478999999999


Q ss_pred             EEEECCEEEeEEeCc
Q psy14385        200 FIYFEGKMQSQMVGP  214 (228)
Q Consensus       200 lvYk~G~~v~~lvG~  214 (228)
                      ++|++|+.+.+++|.
T Consensus       734 ~~~~~g~~~~~~~G~  748 (780)
T 3apo_A          734 KLYQYERAKKSIWEE  748 (780)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             EEEcCCCccccccCc
Confidence            999999999999885

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.71  E-value=3e-08  Score=74.70  Aligned_cols=66  Identities=24%  Similarity=0.363  Sum_probs=57.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-------------------------CCCCCCCCCCcEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT-------------------------CIPNYPDKNLPTL  199 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-------------------------~~~~y~v~~LPTl  199 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+++.|+.|+.+.                         ....|++.++||+
T Consensus        24 ~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~  103 (136)
T 1lu4_A           24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAF  103 (136)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEE
Confidence            35788888    999999999999999999999999999765                         1356899999999


Q ss_pred             EEE-ECCEEEeEEe---Ccc
Q psy14385        200 FIY-FEGKMQSQMV---GPD  215 (228)
Q Consensus       200 lvY-k~G~~v~~lv---G~~  215 (228)
                      ++| ++|+++ .+.   |..
T Consensus       104 ~lid~~G~i~-~~~~~~g~~  122 (136)
T 1lu4_A          104 VFYRADGTST-FVNNPTAAM  122 (136)
T ss_dssp             EEECTTSCEE-EECCSSSCC
T ss_pred             EEECCCCcEE-EEEcCCCcc
Confidence            999 799999 888   653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.70  E-value=2.9e-08  Score=82.25  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=56.5

Q ss_pred             ceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--C---CCCCCCCCCcEEEEEECCEEE-eEEeCcc
Q psy14385        150 IWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTT--C---IPNYPDKNLPTLFIYFEGKMQ-SQMVGPD  215 (228)
Q Consensus       150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~---~~~y~v~~LPTllvYk~G~~v-~~lvG~~  215 (228)
                      ..+||.|     |++|+.+.+.|+++|+.++.++|+++|++.  .   +..|++.++||+++|++|+.+ .++.|..
T Consensus        23 ~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~   99 (226)
T 1a8l_A           23 PVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLP   99 (226)
T ss_dssp             CEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCC
T ss_pred             CeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCceeeEEEeccC
Confidence            4555666     899999999999999888899999999886  3   478999999999999999875 6777754

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.70  E-value=4.1e-09  Score=99.99  Aligned_cols=86  Identities=15%  Similarity=0.257  Sum_probs=70.8

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---------CcEEEEEeCCCC---CCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---------TTKFIKSISTTC---IPNYP  192 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---------~~KFvkI~ad~~---~~~y~  192 (228)
                      +.|++++.++|...+.+. ++.+|||+|    |++|+.+.|.|.++|++|+         .+.|++||++..   ...|+
T Consensus        23 ~~V~~Lt~~~F~~~l~~~-~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           23 SSVVDLSGDDFSRVHRVA-PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             TTEEECSCSCGGGTCTTG-GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCcEECCHHHHHHHHHhC-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            579999999998777643 235788888    9999999999999999997         399999999974   57899


Q ss_pred             CCCCcEEEEEECCEE--EeEEeCcc
Q psy14385        193 DKNLPTLFIYFEGKM--QSQMVGPD  215 (228)
Q Consensus       193 v~~LPTllvYk~G~~--v~~lvG~~  215 (228)
                      |.++||+++|++|..  +..+.|..
T Consensus       102 V~~~PTlilf~~gg~~~~~~y~G~r  126 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSCRSNEECGTS  126 (470)
T ss_dssp             CCSSCEEEEEEESSCCCTTSCCCCC
T ss_pred             CCccCeEEEEECCCceEEEEeeCCC
Confidence            999999999986543  54555643

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.69  E-value=4.3e-08  Score=73.44  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=57.2

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCcE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLPT  198 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LPT  198 (228)
                      +.+|||+|    |++|+.+.+.|.+++++|+++.|+.|+.+.                          ....|++.++||
T Consensus        25 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~  104 (136)
T 1zzo_A           25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPA  104 (136)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSE
T ss_pred             CCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCce
Confidence            35788888    999999999999999999999999999753                          135789999999


Q ss_pred             EEEE-ECCEEEeEEeCcc
Q psy14385        199 LFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       199 llvY-k~G~~v~~lvG~~  215 (228)
                      +++| ++|+++ .+.|..
T Consensus       105 ~~~id~~g~i~-~~~g~~  121 (136)
T 1zzo_A          105 YAFVDPHGNVD-VVRGRM  121 (136)
T ss_dssp             EEEECTTCCEE-EEESCC
T ss_pred             EEEECCCCCEE-EEecCC
Confidence            9999 699999 888864

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.68  E-value=6.4e-09  Score=84.27  Aligned_cols=66  Identities=8%  Similarity=0.066  Sum_probs=53.6

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHH--HhCCCcEEEEEeCCC----CCCCCCCCCCcEEEEEE-CCEEEeEEeCc
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELA--AKFPTTKFIKSISTT----CIPNYPDKNLPTLFIYF-EGKMQSQMVGP  214 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA--~kyp~~KFvkI~ad~----~~~~y~v~~LPTllvYk-~G~~v~~lvG~  214 (228)
                      +++|+|.|    |++|+.|.+.+.+++  .++.+..|+.|+++.    ....|.+.++||+++|+ +|+.+.+++|.
T Consensus        44 ~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G~  120 (151)
T 3ph9_A           44 KKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGR  120 (151)
T ss_dssp             TCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTTCCCS
T ss_pred             CCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEEEeCC
Confidence            36899999    999999999998753  234345677777752    24679999999999999 99999999997

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.11  E-value=2.6e-09  Score=81.30  Aligned_cols=69  Identities=17%  Similarity=0.277  Sum_probs=59.5

Q ss_pred             CceEEEEe----ccchHHHHHHH---HHHHHhCCC-cEEEEEeCCC-----CCCCCCCCCCcEEEEE--ECCEE--EeEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHL---SELAAKFPT-TKFIKSISTT-----CIPNYPDKNLPTLFIY--FEGKM--QSQM  211 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L---~~LA~kyp~-~KFvkI~ad~-----~~~~y~v~~LPTllvY--k~G~~--v~~l  211 (228)
                      +.+|||+|    |++|+.+.+.|   ..+++.+.. +.|+.|+.+.     ....|++.++||+++|  ++|+.  +.++
T Consensus        19 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~   98 (130)
T 2lst_A           19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRL   98 (130)
Confidence            35788888    99999999999   999999875 8999999842     4688999999999999  88999  8999


Q ss_pred             eCcccc
Q psy14385        212 VGPDEF  217 (228)
Q Consensus       212 vG~~~~  217 (228)
                      .|....
T Consensus        99 ~G~~~~  104 (130)
T 2lst_A           99 FGSRPR  104 (130)
Confidence            987543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.65  E-value=3.7e-08  Score=75.08  Aligned_cols=81  Identities=14%  Similarity=0.316  Sum_probs=63.7

Q ss_pred             EEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCC--------------------
Q psy14385        132 LEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTT--------------------  186 (228)
Q Consensus       132 ~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~--------------------  186 (228)
                      ..+++..+.....   ++.+|||+|    |++|+.+.+.|.+++++|++ +.|+.|+.+.                    
T Consensus        15 ~~~~g~~~~~~~~---~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2b5x_A           15 AWLNGEVTREQLI---GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (148)
T ss_dssp             EEESCCCCHHHHT---TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             ccccCcccchhhc---CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCC
Confidence            4455554443322   235788888    99999999999999999987 9999998542                    


Q ss_pred             ----------CCCCCCCCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        187 ----------CIPNYPDKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       187 ----------~~~~y~v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                                ....|++.++||++++ ++|+++..+.|..
T Consensus        92 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~  131 (148)
T 2b5x_A           92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGS  131 (148)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCS
T ss_pred             cceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCC
Confidence                      1356999999999999 8999999999864

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=98.65  E-value=1e-08  Score=82.05  Aligned_cols=86  Identities=15%  Similarity=0.139  Sum_probs=63.4

Q ss_pred             eEEeChhhHHHHHHhc-CCCceEEEEe----ccchHHHHHHH---HHHHHhCC-CcEEEEEeCCCC--------------
Q psy14385        131 VLEINGDTYVQEVNNA-GEGIWVVLHF----IPLCSLINNHL---SELAAKFP-TTKFIKSISTTC--------------  187 (228)
Q Consensus       131 V~eIs~edf~~eV~~a-~~~~~VVVhf----~~~C~~l~~~L---~~LA~kyp-~~KFvkI~ad~~--------------  187 (228)
                      ...++-.+|.+.+..+ .++++|+|+|    |++|+.|.+.+   ..+++.+. ++.|+.|+.+..              
T Consensus        28 ~~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~  107 (172)
T 3f9u_A           28 EVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGT  107 (172)
T ss_dssp             CCCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTE
T ss_pred             ccccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcch
Confidence            3345667777666432 1246899999    99999984433   44444443 689999998753              


Q ss_pred             ---------------CCCCCCCCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        188 ---------------IPNYPDKNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       188 ---------------~~~y~v~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                                     ...|++.++||+++| ++|+++.++.|...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~  152 (172)
T 3f9u_A          108 ERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDE  152 (172)
T ss_dssp             EEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCC
T ss_pred             hhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCC
Confidence                           356899999999999 89999999988764

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.62  E-value=3.6e-08  Score=94.15  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=68.9

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC----cEEEEEeCCC-----CCCCCCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT----TKFIKSISTT-----CIPNYPDKN  195 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~----~KFvkI~ad~-----~~~~y~v~~  195 (228)
                      +.|.+++.++|...+.+.+  .+|||+|    |++|+.+.+.|++||++|.+    +.|++||++.     ....|++.+
T Consensus        12 ~~V~~Lt~~~f~~~v~~~~--k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~   89 (519)
T 3t58_A           12 DPLTLLDADSVRPTVLGSS--SAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG   89 (519)
T ss_dssp             SSSEEECTTTHHHHHSSCS--SEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS
T ss_pred             CCcEECChHHHHHHHHhCC--CeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc
Confidence            4688999999999886553  6888888    99999999999999999974    9999999853     358899999


Q ss_pred             CcEEEEEEC----CEEEeEEeC
Q psy14385        196 LPTLFIYFE----GKMQSQMVG  213 (228)
Q Consensus       196 LPTllvYk~----G~~v~~lvG  213 (228)
                      +||+++|++    |..+...+|
T Consensus        90 ~PTl~~f~~g~~~G~~~~~~~g  111 (519)
T 3t58_A           90 FPTVRFFQAFTKNGSGATLPGA  111 (519)
T ss_dssp             BSEEEEECTTCCSCCCEEECCS
T ss_pred             cCEEEEEcCcccCCCceeEecC
Confidence            999999995    444444444

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.59  E-value=4.6e-08  Score=67.67  Aligned_cols=55  Identities=18%  Similarity=0.280  Sum_probs=47.7

Q ss_pred             ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        157 IPLCSLINNHLSELAAKFP-TTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |++|+.+.+.|++++.+|. .+.|++++.......|++.++||+++  +|+.+.+  |..
T Consensus        11 C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~   66 (77)
T 1ilo_A           11 CANCQMLEKNAREAVKELGIDAEFEKIKEMDQILEAGLTALPGLAV--DGELKIM--GRV   66 (77)
T ss_dssp             SSTTHHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHTCSSSSCEEE--TTEEEEC--SSC
T ss_pred             ChhHHHHHHHHHHHHHHcCCceEEEEecCHHHHHHCCCCcCCEEEE--CCEEEEc--CCC
Confidence            9999999999999999997 79999999333467899999999999  9998876  653

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.55  E-value=1.1e-07  Score=83.04  Aligned_cols=82  Identities=12%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhC----CCcEEEEEeCCC-----C---CCCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKF----PTTKFIKSISTT-----C---IPNYPD  193 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~-----~---~~~y~v  193 (228)
                      +.|..++..+|...+ +.+  .+|||.|   .+-|. |.|.|++||..|    +.+.|++||++.     .   +..|+|
T Consensus        16 ~~v~~Lt~~nF~~vi-~~~--~~vlV~Fy~~ApWCg-l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V   91 (248)
T 2c0g_A           16 TGCVDLDELSFEKTV-ERF--PYSVVKFDIASPYGE-KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV   91 (248)
T ss_dssp             TTCEECCTTTHHHHH-TTS--SEEEEEEEESSCCSH-HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC
T ss_pred             CCcEECCHHHHHHHH-hcC--CCEEEEEECCCCCCc-cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCC
Confidence            458889999999855 333  5788877   58898 999999999997    579999999776     3   478999


Q ss_pred             C--CCcEEEEEECCEE--EeEE--eCcc
Q psy14385        194 K--NLPTLFIYFEGKM--QSQM--VGPD  215 (228)
Q Consensus       194 ~--~LPTllvYk~G~~--v~~l--vG~~  215 (228)
                      .  ++|||++|+ |+.  ...+  .|..
T Consensus        92 ~~~~~PTl~~F~-G~~~~~~~y~~~G~~  118 (248)
T 2c0g_A           92 DDKNFPSIFLFK-GNADEYVQLPSHVDV  118 (248)
T ss_dssp             CTTSCCEEEEES-SSSSSEEECCTTSCC
T ss_pred             CcCCCCeEEEEe-CCcCcceeecccCCC
Confidence            9  999999999 983  4445  5643

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.55  E-value=9.1e-08  Score=73.88  Aligned_cols=68  Identities=25%  Similarity=0.292  Sum_probs=58.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC-------------------------CCCCCCCCCc
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC-------------------------IPNYPDKNLP  197 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~-------------------------~~~y~v~~LP  197 (228)
                      +++|||.|    |+.|+.+.+.|.+++.+|+.  +.|+.|+.+..                         ...|++.++|
T Consensus        28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  107 (152)
T 3gl3_A           28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMP  107 (152)
T ss_dssp             TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCC
Confidence            46788888    99999999999999999975  89999987742                         2459999999


Q ss_pred             EEEEE-ECCEEEeEEeCccc
Q psy14385        198 TLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvY-k~G~~v~~lvG~~~  216 (228)
                      |++++ ++|+++..++|...
T Consensus       108 ~~~lid~~G~i~~~~~g~~~  127 (152)
T 3gl3_A          108 TSFLIDRNGKVLLQHVGFRP  127 (152)
T ss_dssp             EEEEECTTSBEEEEEESCCT
T ss_pred             eEEEECCCCCEEEEEccCCC
Confidence            98887 89999999999754

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.54  E-value=1.4e-07  Score=73.42  Aligned_cols=67  Identities=18%  Similarity=0.355  Sum_probs=56.5

Q ss_pred             CceEEEEe----ccchHHH-HHHHHHHHHhCC--CcEEEEEeCC------------------------------------
Q psy14385        149 GIWVVLHF----IPLCSLI-NNHLSELAAKFP--TTKFIKSIST------------------------------------  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l-~~~L~~LA~kyp--~~KFvkI~ad------------------------------------  185 (228)
                      +++|||+|    |++|+.. .+.|.+++++|+  ++.|+.|+.+                                    
T Consensus        28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  107 (158)
T 3eyt_A           28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP  107 (158)
T ss_dssp             TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred             CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence            46888888    9999994 999999999997  5899988853                                    


Q ss_pred             CCCCCCCCCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        186 TCIPNYPDKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       186 ~~~~~y~v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      .....|++.++||++++ ++|+++..+.|..
T Consensus       108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~  138 (158)
T 3eyt_A          108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDV  138 (158)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSEEEEEEESCC
T ss_pred             HHHHHcCCCCCCEEEEECCCCCEEEEEeCCC
Confidence            12356999999998888 7999999999864

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.54  E-value=2e-07  Score=73.18  Aligned_cols=70  Identities=23%  Similarity=0.410  Sum_probs=59.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC----------------------CCCCCCCCCCcEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT----------------------CIPNYPDKNLPTLF  200 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~----------------------~~~~y~v~~LPTll  200 (228)
                      +++|||.|    |++|+.+.+.|.+++++|+  ++.|+.|+.+.                      ....|++.++||++
T Consensus        41 gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~  120 (158)
T 3hdc_A           41 GKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTF  120 (158)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEE
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEE
Confidence            46788888    9999999999999999997  78999998875                      13679999999966


Q ss_pred             EE-ECCEEEeEEeCccccC
Q psy14385        201 IY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       201 vY-k~G~~v~~lvG~~~~G  218 (228)
                      ++ ++|+++..+.|.....
T Consensus       121 lid~~G~i~~~~~G~~~~~  139 (158)
T 3hdc_A          121 IVDRKGIIRQRVTGGIEWD  139 (158)
T ss_dssp             EECTTSBEEEEEESCCCTT
T ss_pred             EEcCCCCEEEEEeCCCccc
Confidence            66 8999999999987654

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.54  E-value=1.1e-07  Score=73.65  Aligned_cols=67  Identities=22%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------------CCCCCCCCCCc
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT-------------------------CIPNYPDKNLP  197 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~-------------------------~~~~y~v~~LP  197 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+  ++.|+.|+.+.                         ....|++.++|
T Consensus        26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  105 (151)
T 2f9s_A           26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP  105 (151)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCC
Confidence            46888888    9999999999999999996  48999988753                         23569999999


Q ss_pred             EEEEE-ECCEEEeEEeCcc
Q psy14385        198 TLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvY-k~G~~v~~lvG~~  215 (228)
                      |++++ ++|+++..+.|..
T Consensus       106 ~~~lid~~G~i~~~~~G~~  124 (151)
T 2f9s_A          106 TTFLINPEGKVVKVVTGTM  124 (151)
T ss_dssp             EEEEECTTSEEEEEEESCC
T ss_pred             eEEEECCCCcEEEEEeCCC
Confidence            99999 8999999999864

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.53  E-value=8.5e-08  Score=76.12  Aligned_cols=66  Identities=20%  Similarity=0.241  Sum_probs=56.8

Q ss_pred             CceEEEEe-----ccchHHHHHHH---HHHHHhC-CCcEEEEEeCCCC--------------CCCCCCCCCcEEEEE-EC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHL---SELAAKF-PTTKFIKSISTTC--------------IPNYPDKNLPTLFIY-FE  204 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L---~~LA~ky-p~~KFvkI~ad~~--------------~~~y~v~~LPTllvY-k~  204 (228)
                      +++|||.|     |++|+.+.+.|   .+++..+ .++.|+.++.+..              ...|++.++||+++| ++
T Consensus        47 gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~  126 (154)
T 2ju5_A           47 HKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAE  126 (154)
T ss_dssp             CCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEECTT
T ss_pred             CCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEcCC
Confidence            35788877     99999999999   8887766 5799999998752              367999999999999 89


Q ss_pred             CEEEeEEeCcc
Q psy14385        205 GKMQSQMVGPD  215 (228)
Q Consensus       205 G~~v~~lvG~~  215 (228)
                      |+.+.++ |..
T Consensus       127 G~~~~~~-G~~  136 (154)
T 2ju5_A          127 GKQLARM-GFE  136 (154)
T ss_dssp             CCEEEEE-CCC
T ss_pred             CCEEEEe-cCC
Confidence            9999999 876

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.53  E-value=5.5e-08  Score=74.28  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=58.9

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC----------------------------CCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC----------------------------IPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~----------------------------~~~y~v~  194 (228)
                      +++|||+|    |++|+.+.+.|.+++++|++  +.|+.|+.+..                            ...|++.
T Consensus        31 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~  110 (148)
T 3hcz_A           31 AKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY  110 (148)
T ss_dssp             CSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcC
Confidence            46888888    99999999999999999975  89999987742                            2458899


Q ss_pred             CCcEEEEE-ECCEEEeEEeCcccc
Q psy14385        195 NLPTLFIY-FEGKMQSQMVGPDEF  217 (228)
Q Consensus       195 ~LPTllvY-k~G~~v~~lvG~~~~  217 (228)
                      ++||++++ ++|+++.+..|...+
T Consensus       111 ~~P~~~lid~~G~i~~~~~g~~~~  134 (148)
T 3hcz_A          111 ATPVLYVLDKNKVIIAKRIGYENL  134 (148)
T ss_dssp             SSCEEEEECTTCBEEEESCCGGGH
T ss_pred             CCCEEEEECCCCcEEEecCCHHHH
Confidence            99999999 899999999887543

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.53  E-value=2.5e-07  Score=71.14  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHH---HHHhC--CCcEEEEEeCCCC---------------------------CCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSE---LAAKF--PTTKFIKSISTTC---------------------------IPNYP  192 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~---LA~ky--p~~KFvkI~ad~~---------------------------~~~y~  192 (228)
                      +.+|||+|    |++|+.+.+.|.+   |+++|  .++.|+.|+.+..                           ...|+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            46899988    9999999999999   99998  4689999987753                           56799


Q ss_pred             CCCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        193 DKNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       193 v~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      +.++||++++ ++|+++.+.+|...
T Consensus       111 v~~~P~~~lid~~G~i~~~~~~~~~  135 (142)
T 3eur_A          111 LRAIPTLYLLDKNKTVLLKDATLQK  135 (142)
T ss_dssp             CTTCSEEEEECTTCBEEEEEECHHH
T ss_pred             CCcCCeEEEECCCCcEEecCCCHHH
Confidence            9999999999 78999999887644

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.53  E-value=1.5e-07  Score=72.81  Aligned_cols=69  Identities=20%  Similarity=0.293  Sum_probs=57.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC--------------------------CCCCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC--------------------------IPNYPDKNL  196 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~--------------------------~~~y~v~~L  196 (228)
                      +++|||+|    |+.|+.+.+.|.+++++|++  +.|+.|+.+..                          ...|++.++
T Consensus        28 gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (154)
T 3kcm_A           28 GQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGV  107 (154)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSB
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCC
Confidence            46888888    99999999999999999975  88998888752                          356899999


Q ss_pred             cE-EEEEECCEEEeEEeCcccc
Q psy14385        197 PT-LFIYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       197 PT-llvYk~G~~v~~lvG~~~~  217 (228)
                      |+ +++.++|+++..+.|....
T Consensus       108 P~~~lid~~G~i~~~~~g~~~~  129 (154)
T 3kcm_A          108 PETFVIDRHGVILKKVVGAMEW  129 (154)
T ss_dssp             CEEEEECTTSBEEEEEESCCCT
T ss_pred             CeEEEECCCCcEEEEEcCCCcc
Confidence            95 5555899999999998644

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.52  E-value=1.3e-07  Score=74.37  Aligned_cols=65  Identities=18%  Similarity=0.305  Sum_probs=55.6

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC------------------C--------------------
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST------------------T--------------------  186 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad------------------~--------------------  186 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+++.|+.|+.+                  .                    
T Consensus        37 gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (165)
T 3ha9_A           37 GDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMV  116 (165)
T ss_dssp             SSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEE
T ss_pred             CCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEE
Confidence            46888888    99999999999999999999999999887                  1                    


Q ss_pred             -----CCCCCCCCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        187 -----CIPNYPDKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       187 -----~~~~y~v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                           ....|++.++||++++ ++|+++.  .|..
T Consensus       117 ~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~  149 (165)
T 3ha9_A          117 MDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTT  149 (165)
T ss_dssp             ECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEES
T ss_pred             eChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCC
Confidence                 2356899999999999 7899888  5543

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.52  E-value=2.6e-07  Score=68.79  Aligned_cols=68  Identities=24%  Similarity=0.266  Sum_probs=57.2

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC-------------------------------CCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT-------------------------------CIPNYP  192 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~-------------------------------~~~~y~  192 (228)
                      +++|||.|    |++|+.+.+.|.+++++++ ++.|+.|+...                               ....|+
T Consensus        22 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  101 (138)
T 4evm_A           22 GKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYG  101 (138)
T ss_dssp             TSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHTT
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHcC
Confidence            46888888    9999999999999999997 68999984321                               235789


Q ss_pred             CCCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        193 DKNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       193 v~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      +.++||++++ ++|+++..+.|...
T Consensus       102 v~~~P~~~lid~~G~i~~~~~g~~~  126 (138)
T 4evm_A          102 VRSYPTQAFIDKEGKLVKTHPGFME  126 (138)
T ss_dssp             CCSSSEEEEECTTCCEEEEEESCCC
T ss_pred             cccCCeEEEECCCCcEEEeecCCCc
Confidence            9999999999 89999999998653

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.51  E-value=1.1e-07  Score=72.61  Aligned_cols=66  Identities=17%  Similarity=0.223  Sum_probs=56.1

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhC-CC--cEEEEEeCCC----------------------------CCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKF-PT--TKFIKSISTT----------------------------CIPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~--~KFvkI~ad~----------------------------~~~~y~v  193 (228)
                      +++|||+|    |++|+.+.+.|.+++++| ++  +.|+.|+.+.                            ....|++
T Consensus        33 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  112 (148)
T 3fkf_A           33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAI  112 (148)
T ss_dssp             TSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTC
T ss_pred             CcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCC
Confidence            46888888    999999999999999999 54  8999987764                            1367999


Q ss_pred             CCCcEEEEE-ECCEEEeEEeCc
Q psy14385        194 KNLPTLFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       194 ~~LPTllvY-k~G~~v~~lvG~  214 (228)
                      .++||++++ ++|+++....+.
T Consensus       113 ~~~P~~~lid~~G~i~~~~~~~  134 (148)
T 3fkf_A          113 LTLPTNILLSPTGKILARDIQG  134 (148)
T ss_dssp             CSSSEEEEECTTSBEEEESCCH
T ss_pred             CCcCEEEEECCCCeEEEecCCH
Confidence            999999999 899999887643

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.51  E-value=1.6e-07  Score=73.16  Aligned_cols=67  Identities=18%  Similarity=0.295  Sum_probs=57.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC----------------------------CCCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT----------------------------CIPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~----------------------------~~~~y~v~  194 (228)
                      +++|||.|    |++|+.+.+.|.+++.+|++  +.|+.|+.+.                            ....|++.
T Consensus        29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (152)
T 2lrn_A           29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV  108 (152)
T ss_dssp             TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence            46888888    99999999999999999975  8999998775                            12579999


Q ss_pred             CCcEEEEE-ECCEEEeEEeCcc
Q psy14385        195 NLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       195 ~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      ++||++++ ++|+++...++..
T Consensus       109 ~~P~~~lid~~G~i~~~~~~~~  130 (152)
T 2lrn_A          109 GFPHIILVDPEGKIVAKELRGD  130 (152)
T ss_dssp             SSCEEEEECTTSEEEEECCCTT
T ss_pred             cCCeEEEECCCCeEEEeeCCHH
Confidence            99999999 8999999875543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.48  E-value=3.6e-07  Score=71.01  Aligned_cols=67  Identities=16%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             CceEEEEe----ccchHH-HHHHHHHHHHhCCC--cEEEEEeCC----------------------------C-------
Q psy14385        149 GIWVVLHF----IPLCSL-INNHLSELAAKFPT--TKFIKSIST----------------------------T-------  186 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~-l~~~L~~LA~kyp~--~KFvkI~ad----------------------------~-------  186 (228)
                      +++|||+|    |++|+. +.+.|.+++++|++  +.|+.|+.+                            .       
T Consensus        30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (160)
T 3lor_A           30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRI  109 (160)
T ss_dssp             TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSS
T ss_pred             CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchh
Confidence            46888888    999999 79999999999974  899988752                            0       


Q ss_pred             --CCCCCCCCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        187 --CIPNYPDKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       187 --~~~~y~v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                        ....|++.++||++++ ++|+++..+.|..
T Consensus       110 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~  141 (160)
T 3lor_A          110 PSTMKKYRLEGTPSIILADRKGRIRQVQFGQV  141 (160)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSBEEEEEESCC
T ss_pred             hhHHHhcccCccceEEEECCCCcEEEEecCcC
Confidence              2356899999999999 5999999999874

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.46  E-value=2.6e-07  Score=71.82  Aligned_cols=68  Identities=10%  Similarity=0.072  Sum_probs=57.2

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC---------------------------CCCCCC--C
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT---------------------------CIPNYP--D  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~---------------------------~~~~y~--v  193 (228)
                      +++|||+|    |++|+.+.+.|.+++++|.  ++.|+.|+.+.                           ....|+  +
T Consensus        24 gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  103 (151)
T 3raz_A           24 APVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTV  103 (151)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCCS
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCcc
Confidence            46888888    9999999999999999984  68999999862                           124577  9


Q ss_pred             CCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        194 KNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       194 ~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      .++||++++ ++|+++..+.|...
T Consensus       104 ~~~P~~~lid~~G~i~~~~~g~~~  127 (151)
T 3raz_A          104 GVLPFTVVEAPKCGYRQTITGEVN  127 (151)
T ss_dssp             CCSSEEEEEETTTTEEEECCSCCC
T ss_pred             CCCCEEEEECCCCcEEEEECCCCC
Confidence            999988888 78999999998753

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.45  E-value=3e-07  Score=71.68  Aligned_cols=67  Identities=21%  Similarity=0.434  Sum_probs=56.6

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC---CCCC---------------------------C
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC---IPNY---------------------------P  192 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~---~~~y---------------------------~  192 (228)
                      +++|||.|    |++|+.+.+.|.+++++|++  +.|+.|+.+..   ...|                           +
T Consensus        34 gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (165)
T 3or5_A           34 GKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGG  113 (165)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTTC
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhccC
Confidence            46888888    99999999999999999975  89999998762   1222                           7


Q ss_pred             CCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        193 DKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       193 v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      +..+||++++ ++|+++..+.|..
T Consensus       114 i~~~P~~~lid~~G~i~~~~~g~~  137 (165)
T 3or5_A          114 ITGIPTSFVIDASGNVSGVIVGPR  137 (165)
T ss_dssp             SCSSSEEEEECTTSBEEEEECSCC
T ss_pred             CCCCCeEEEECCCCcEEEEEcCCC
Confidence            9999998888 8999999998865

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.44  E-value=6.6e-07  Score=76.69  Aligned_cols=73  Identities=15%  Similarity=0.160  Sum_probs=57.1

Q ss_pred             hHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC-----CCcEEEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385        138 TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF-----PTTKFIKSISTTC---IPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky-----p~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G  205 (228)
                      +..+.+.+.. +..+|+.|    |++|+.+.+.|.++|.+|     +++.|.+||++..   ...|++.++||+++  ||
T Consensus       128 ~~~~~~~~~~-~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G  204 (243)
T 2hls_A          128 ATKEALKSLK-GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NG  204 (243)
T ss_dssp             HHHHHHHHCC-SCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT
T ss_pred             HHHHHHHHcC-CCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CC
Confidence            3344454432 24556656    999999999999999998     7899999999874   47899999999988  99


Q ss_pred             EEEeEEeCcc
Q psy14385        206 KMQSQMVGPD  215 (228)
Q Consensus       206 ~~v~~lvG~~  215 (228)
                      +.+  +.|..
T Consensus       205 ~~~--~~G~~  212 (243)
T 2hls_A          205 YLV--FVGVP  212 (243)
T ss_dssp             EEE--EESCC
T ss_pred             EEE--EeCCC
Confidence            865  66754

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.44  E-value=4.4e-08  Score=78.95  Aligned_cols=67  Identities=9%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC----CCCCCCC--CCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT----CIPNYPD--KNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~----~~~~y~v--~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      .+|||+|    |++|+.+.+.|.+++..+. .+.|+.|+++.    ....|.+  ..+||+++| ++|+.+.+++|...
T Consensus        47 k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~  125 (164)
T 1sen_A           47 LPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENG  125 (164)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTTS
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCCC
Confidence            5788888    9999999999999887764 47788887664    2456777  669999999 89999999999743

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.43  E-value=2.3e-07  Score=71.71  Aligned_cols=65  Identities=18%  Similarity=0.210  Sum_probs=54.9

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCC---------------------------CCCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTT---------------------------CIPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~---------------------------~~~~y~v~  194 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+   ++.|+.|+.+.                           ....|++.
T Consensus        28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (146)
T 1o8x_A           28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE  107 (146)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCC
Confidence            46888888    9999999999999999997   58888887764                           12568999


Q ss_pred             CCcEEEEEE--CCEEEeEEeC
Q psy14385        195 NLPTLFIYF--EGKMQSQMVG  213 (228)
Q Consensus       195 ~LPTllvYk--~G~~v~~lvG  213 (228)
                      ++||+++|.  +|+++....+
T Consensus       108 ~~Pt~~lid~~~G~i~~~~~~  128 (146)
T 1o8x_A          108 SIPTLIGVDADSGDVVTTRAR  128 (146)
T ss_dssp             SSSEEEEEETTTCCEEESCHH
T ss_pred             CCCEEEEEECCCCeEEEecch
Confidence            999999997  9999887644

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.42  E-value=2.9e-07  Score=71.33  Aligned_cols=65  Identities=18%  Similarity=0.208  Sum_probs=56.2

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC---------------------------C---CCCCCCCCC
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST---------------------------T---CIPNYPDKN  195 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad---------------------------~---~~~~y~v~~  195 (228)
                      ++|||+|    |++|+.+.+.|.+++++| ++.|+.|+.+                           .   ....|++.+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  109 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG  109 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence            4677777    999999999999999999 9999999981                           2   247899999


Q ss_pred             CcEEEEE-ECCEEEeEEeCcc
Q psy14385        196 LPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       196 LPTllvY-k~G~~v~~lvG~~  215 (228)
                      +|+++++ ++|+++..+.|..
T Consensus       110 ~P~~~lid~~G~i~~~~~g~~  130 (154)
T 3ia1_A          110 QPWTFVVDREGKVVALFAGRA  130 (154)
T ss_dssp             SCEEEEECTTSEEEEEEESBC
T ss_pred             ccEEEEECCCCCEEEEEcCCC
Confidence            9997777 8999999999864

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.41  E-value=2.8e-07  Score=70.91  Aligned_cols=64  Identities=16%  Similarity=0.176  Sum_probs=54.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCC---------------------------CCCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTT---------------------------CIPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~---------------------------~~~~y~v~  194 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+   ++.|+.|+.+.                           ....|++.
T Consensus        28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (144)
T 1i5g_A           28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVK  107 (144)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCC
Confidence            46888888    9999999999999999997   58888888764                           12468999


Q ss_pred             CCcEEEEEE--CCEEEeEEe
Q psy14385        195 NLPTLFIYF--EGKMQSQMV  212 (228)
Q Consensus       195 ~LPTllvYk--~G~~v~~lv  212 (228)
                      ++||++++.  +|+++....
T Consensus       108 ~~P~~~lid~~~G~i~~~~~  127 (144)
T 1i5g_A          108 SIPTLVGVEADSGNIITTQA  127 (144)
T ss_dssp             SSSEEEEEETTTCCEEESCH
T ss_pred             CCCEEEEEECCCCcEEeccc
Confidence            999999995  899888753

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.40  E-value=3.5e-07  Score=70.07  Aligned_cols=64  Identities=20%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---------------------------CCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---------------------------IPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---------------------------~~~y~v~  194 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+   ++.|+.|+.+.-                           ...|++.
T Consensus        28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  107 (144)
T 1o73_A           28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE  107 (144)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred             CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCC
Confidence            46888888    9999999999999999987   688888877641                           2457899


Q ss_pred             CCcEEEEEE--CCEEEeEEe
Q psy14385        195 NLPTLFIYF--EGKMQSQMV  212 (228)
Q Consensus       195 ~LPTllvYk--~G~~v~~lv  212 (228)
                      ++||++++.  +|+++....
T Consensus       108 ~~Pt~~lid~~~G~i~~~~~  127 (144)
T 1o73_A          108 SIPTLITINADTGAIIGTQA  127 (144)
T ss_dssp             SSSEEEEEETTTCCEEESCH
T ss_pred             CCCEEEEEECCCCeEEecch
Confidence            999999998  899987753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.38  E-value=1.1e-06  Score=83.03  Aligned_cols=77  Identities=17%  Similarity=0.227  Sum_probs=60.1

Q ss_pred             EeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385        133 EINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       133 eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G  205 (228)
                      .++ +++.+.+.+.+. ..+|+.|    |++|+.+.+.|+++|..|+.++|.++|++..   ..+|+++++||+++  ||
T Consensus       103 ~~~-~~~~~~i~~~~~-~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g  178 (521)
T 1hyu_A          103 KEA-QSLLEQIRDIDG-DFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NG  178 (521)
T ss_dssp             CSC-HHHHHHHHHCCS-CEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT
T ss_pred             CCC-HHHHHHHHhcCC-CcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CC
Confidence            344 345555544332 3445555    9999999999999999999999999999875   57899999999988  99


Q ss_pred             EEEeEEeCcc
Q psy14385        206 KMQSQMVGPD  215 (228)
Q Consensus       206 ~~v~~lvG~~  215 (228)
                      +.+.+  |..
T Consensus       179 ~~~~~--G~~  186 (521)
T 1hyu_A          179 KEFGQ--GRM  186 (521)
T ss_dssp             EEEEE--SCC
T ss_pred             EEEec--CCC
Confidence            98865  653

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.38  E-value=2e-07  Score=71.78  Aligned_cols=56  Identities=21%  Similarity=0.179  Sum_probs=48.8

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v  208 (228)
                      .+|+.|    |++|+.+.+.|+++|.+++ +.|.++|+++.   ...|+++ +|||++|.+|+.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v   92 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL   92 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE
Confidence            345555    9999999999999999997 99999999863   4679987 9999999999987

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.37  E-value=2.4e-07  Score=72.79  Aligned_cols=68  Identities=19%  Similarity=0.266  Sum_probs=58.3

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC--------------------------CCCCCCCCCc
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC--------------------------IPNYPDKNLP  197 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~--------------------------~~~y~v~~LP  197 (228)
                      ++|||.|    |++|+...+.|.+++++|++  +.|+.|+.+..                          ...|++.++|
T Consensus        36 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P  115 (152)
T 2lrt_A           36 KVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLP  115 (152)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCS
T ss_pred             CEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccCc
Confidence            5788888    99999999999999999964  89999987742                          2457899999


Q ss_pred             EEEEE-ECCEEEeEEeCcccc
Q psy14385        198 TLFIY-FEGKMQSQMVGPDEF  217 (228)
Q Consensus       198 TllvY-k~G~~v~~lvG~~~~  217 (228)
                      |++++ ++|+++..+.|...+
T Consensus       116 ~~~lid~~G~i~~~~~g~~~~  136 (152)
T 2lrt_A          116 SVFLVNRNNELSARGENIKDL  136 (152)
T ss_dssp             EEEEEETTTEEEEETTTCSCH
T ss_pred             eEEEECCCCeEEEecCCHHHH
Confidence            99999 699999999997765

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.36  E-value=4.8e-07  Score=77.56  Aligned_cols=81  Identities=14%  Similarity=0.125  Sum_probs=61.5

Q ss_pred             ceEEeC-hhhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCCC------cEEEEEeCCCC---CCCCCC
Q psy14385        130 RVLEIN-GDTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFPT------TKFIKSISTTC---IPNYPD  193 (228)
Q Consensus       130 ~V~eIs-~edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp~------~KFvkI~ad~~---~~~y~v  193 (228)
                      .+.+.+ .+++...+.+-  +.+|+|+|      |++|+.|.+.|+++|+.++.      ++|+++|++..   ..+|++
T Consensus         7 ~~~~~~~~~ql~~~~~~~--~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv   84 (243)
T 2hls_A            7 LDLSEDFRRELRETLAEM--VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKV   84 (243)
T ss_dssp             CCCCHHHHHHHHHHHTTC--CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTC
T ss_pred             hhCCHHHHHHHHHHHHhC--CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCC
Confidence            344553 34554444332  24666665      79999999999999999877      99999998874   578999


Q ss_pred             CCCcEEEEEECCEEEeEEeCcc
Q psy14385        194 KNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       194 ~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      +++||+++| +|  ..++.|..
T Consensus        85 ~~~Pt~~i~-~g--~~~~~G~~  103 (243)
T 2hls_A           85 ERVPTVAFL-GG--EVRWTGIP  103 (243)
T ss_dssp             CSSSEEEET-TT--TEEEESCC
T ss_pred             CcCCEEEEE-CC--ceeEcCCC
Confidence            999999999 77  67787764

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.36  E-value=5e-07  Score=69.64  Aligned_cols=67  Identities=18%  Similarity=0.300  Sum_probs=57.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC--------------------------CCCCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC--------------------------IPNYPDKNL  196 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~--------------------------~~~y~v~~L  196 (228)
                      +++|||.|    |++|+.+.+.|.+++++|++  +.|+.|+.+..                          ...|++.++
T Consensus        30 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  109 (152)
T 2lja_A           30 GKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGI  109 (152)
T ss_dssp             TSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSS
T ss_pred             CCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCC
Confidence            46888888    99999999999999999974  88999987642                          245899999


Q ss_pred             cEEEEEE-CCEEEeEEeCcc
Q psy14385        197 PTLFIYF-EGKMQSQMVGPD  215 (228)
Q Consensus       197 PTllvYk-~G~~v~~lvG~~  215 (228)
                      ||++++. +|+++..+.|..
T Consensus       110 P~~~lid~~G~i~~~~~g~~  129 (152)
T 2lja_A          110 PRFILLDRDGKIISANMTRP  129 (152)
T ss_dssp             CCEEEECTTSCEEESSCCCT
T ss_pred             CEEEEECCCCeEEEccCCCC
Confidence            9999997 999999887753

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.32  E-value=4.9e-07  Score=69.82  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=54.2

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCcE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLPT  198 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LPT  198 (228)
                      +.+|||+|    |++|+.+.+.|.+++.+ +++.|+.|+.+.                          ....|++.++||
T Consensus        42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  120 (156)
T 1kng_A           42 GKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  120 (156)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             CCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCe
Confidence            35788887    99999999999999988 779999988642                          124589999995


Q ss_pred             E-EEEECCEEEeEEeCccc
Q psy14385        199 L-FIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       199 l-lvYk~G~~v~~lvG~~~  216 (228)
                      + ++.++|+++..+.|...
T Consensus       121 ~~~id~~G~i~~~~~g~~~  139 (156)
T 1kng_A          121 TFVVGREGTIVYKLVGPIT  139 (156)
T ss_dssp             EEEECTTSBEEEEEESCCC
T ss_pred             EEEEcCCCCEEEEEeCCCC
Confidence            5 55589999999998753

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.31  E-value=6.2e-07  Score=69.17  Aligned_cols=66  Identities=14%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCC-----------------------C---CCCCCCCCCCc
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSIST-----------------------T---CIPNYPDKNLP  197 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad-----------------------~---~~~~y~v~~LP  197 (228)
                      .+|||.|    |+.|+.+.+.|.+++.+|+.  +.|+.|+.+                       .   ....|++.++|
T Consensus        29 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  108 (153)
T 2l5o_A           29 KVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYP  108 (153)
T ss_dssp             CEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSS
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCccC
Confidence            5788887    99999999999999999974  888877632                       1   23568999999


Q ss_pred             EEEEE-ECCEEEeEEeCcc
Q psy14385        198 TLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvY-k~G~~v~~lvG~~  215 (228)
                      |++++ ++|+++..+.|..
T Consensus       109 ~~~lid~~G~i~~~~~g~~  127 (153)
T 2l5o_A          109 TSVLIGKKGEILKTYVGEP  127 (153)
T ss_dssp             EEEEECSSSCCCEEEESSC
T ss_pred             eEEEECCCCcEEEEEcCCC
Confidence            99999 8999999999864

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=5.4e-07  Score=69.90  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             CceEEEEe----ccc--hHHHHHHHHHHHHhC---CCcEEEEEeCCCC----------------------------CCCC
Q psy14385        149 GIWVVLHF----IPL--CSLINNHLSELAAKF---PTTKFIKSISTTC----------------------------IPNY  191 (228)
Q Consensus       149 ~~~VVVhf----~~~--C~~l~~~L~~LA~ky---p~~KFvkI~ad~~----------------------------~~~y  191 (228)
                      +++|||+|    |++  |+.+.+.|.+++++|   .++.|+.|+.+..                            ...|
T Consensus        33 gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  112 (150)
T 3fw2_A           33 QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQY  112 (150)
T ss_dssp             TSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHc
Confidence            46899988    999  999999999999999   4589999887742                            2468


Q ss_pred             CCCCCcEEEEE-ECCEEEeEEeCc
Q psy14385        192 PDKNLPTLFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       192 ~v~~LPTllvY-k~G~~v~~lvG~  214 (228)
                      ++..+||++++ ++|+++...++.
T Consensus       113 ~v~~~P~~~lid~~G~i~~~~~~~  136 (150)
T 3fw2_A          113 SIYKIPANILLSSDGKILAKNLRG  136 (150)
T ss_dssp             TCCSSSEEEEECTTSBEEEESCCH
T ss_pred             CCCccCeEEEECCCCEEEEccCCH
Confidence            99999999999 899999887643

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.29  E-value=9.8e-07  Score=68.81  Aligned_cols=67  Identities=18%  Similarity=0.213  Sum_probs=55.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC-------------------------------CCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKF--PTTKFIKSISTT-------------------------------CIPNY  191 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~-------------------------------~~~~y  191 (228)
                      +.+|||+|    |++|+.+.+.|.+++++|  .++.|+-|..+.                               ....|
T Consensus        38 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  117 (164)
T 2h30_A           38 DKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNL  117 (164)
T ss_dssp             TSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHHc
Confidence            46888888    999999999999999986  468887776421                               12458


Q ss_pred             CCCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        192 PDKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       192 ~v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      ++.++||++++ ++|+++..+.|..
T Consensus       118 ~v~~~P~~~lid~~G~i~~~~~g~~  142 (164)
T 2h30_A          118 NISVYPSWALIGKDGDVQRIVKGSI  142 (164)
T ss_dssp             TCCSSSEEEEECTTSCEEEEEESCC
T ss_pred             CCCccceEEEECCCCcEEEEEcCCC
Confidence            99999999999 8999999999964

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.27  E-value=6.9e-07  Score=70.44  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=53.5

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCc-
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLP-  197 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LP-  197 (228)
                      +++|||+|    |++|+.+.+.|.+|+++  ++.|+.|+.+.                          ....|++.++| 
T Consensus        51 gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  128 (168)
T 2b1k_A           51 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE  128 (168)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSSE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccCE
Confidence            46888888    99999999999999998  78888887432                          12458999999 


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      ++++.++|+++..+.|..
T Consensus       129 ~~lid~~G~i~~~~~g~~  146 (168)
T 2b1k_A          129 TFLIDGNGIIRYRHAGDL  146 (168)
T ss_dssp             EEEECTTSBEEEEEESCC
T ss_pred             EEEECCCCeEEEEEeCCC
Confidence            667778999999999864

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.24  E-value=1.8e-06  Score=65.86  Aligned_cols=63  Identities=13%  Similarity=0.231  Sum_probs=53.1

Q ss_pred             CceEEEEe----ccchHHHHHHHHH---HHHhCC--CcEEEEEeCCCC---------------------------CCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSE---LAAKFP--TTKFIKSISTTC---------------------------IPNYP  192 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~---LA~kyp--~~KFvkI~ad~~---------------------------~~~y~  192 (228)
                      +++|||+|    |++|+.+.+.|.+   |+++|.  ++.|+.|+.+..                           ...|+
T Consensus        27 gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  106 (142)
T 3ewl_A           27 AQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYD  106 (142)
T ss_dssp             CSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcC
Confidence            46899988    9999999999998   898884  589999987742                           23899


Q ss_pred             CCCCcEEEEE-ECCEEEeEE
Q psy14385        193 DKNLPTLFIY-FEGKMQSQM  211 (228)
Q Consensus       193 v~~LPTllvY-k~G~~v~~l  211 (228)
                      +.++||++++ ++|+++..-
T Consensus       107 v~~~P~~~lid~~G~i~~~~  126 (142)
T 3ewl_A          107 IRATPTIYLLDGRKRVILKD  126 (142)
T ss_dssp             CCSSSEEEEECTTCBEEECS
T ss_pred             CCCCCeEEEECCCCCEEecC
Confidence            9999999999 789998743

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.24  E-value=2e-06  Score=68.73  Aligned_cols=65  Identities=22%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---------------------------CCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---------------------------IPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---------------------------~~~y~v~  194 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+   ++.|+.|+.+..                           ...|++.
T Consensus        48 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  127 (165)
T 3s9f_A           48 GKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVE  127 (165)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCC
Confidence            46888888    9999999999999999997   478888876642                           2468999


Q ss_pred             CCcEEEEEE--CCEEEeEEeC
Q psy14385        195 NLPTLFIYF--EGKMQSQMVG  213 (228)
Q Consensus       195 ~LPTllvYk--~G~~v~~lvG  213 (228)
                      ++||++++.  +|+++.+..+
T Consensus       128 ~~Pt~~lid~~~G~iv~~~~~  148 (165)
T 3s9f_A          128 SIPTLIGLNADTGDTVTTRAR  148 (165)
T ss_dssp             SSSEEEEEETTTCCEEESCHH
T ss_pred             CCCEEEEEeCCCCEEEecccH
Confidence            999999998  4999887544

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.22  E-value=2.4e-06  Score=70.97  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=50.4

Q ss_pred             ccchHHHHHHHHHHHHhC---CCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        157 IPLCSLINNHLSELAAKF---PTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~ky---p~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |++|+.+.+.+.++|+.+   +.++|+++|++..   ...|+++++||+++|++|....++.|..
T Consensus        37 C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~  101 (229)
T 2ywm_A           37 CQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLP  101 (229)
T ss_dssp             GGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEEESCC
T ss_pred             cHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEECCCcccceecCCc
Confidence            778888888888887765   5699999998874   5889999999999999988888898864

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.19  E-value=2.5e-06  Score=67.01  Aligned_cols=67  Identities=21%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             CceEEEEe----ccc-hHHHHHHHHHHHHhCC-----CcEEEEEeCCCC-------------------------------
Q psy14385        149 GIWVVLHF----IPL-CSLINNHLSELAAKFP-----TTKFIKSISTTC-------------------------------  187 (228)
Q Consensus       149 ~~~VVVhf----~~~-C~~l~~~L~~LA~kyp-----~~KFvkI~ad~~-------------------------------  187 (228)
                      +++|||+|    |++ |+...+.|.+++++|.     ++.|+.|+.+..                               
T Consensus        35 gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~  114 (172)
T 2k6v_A           35 DKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREA  114 (172)
T ss_dssp             TSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHH
T ss_pred             CCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHH
Confidence            46899988    998 9999999999999997     699999987631                               


Q ss_pred             ---------------CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        188 ---------------IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       188 ---------------~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                                     ...|.+..+||++++.+|+++..+.|..
T Consensus       115 ~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~  157 (172)
T 2k6v_A          115 AQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDK  157 (172)
T ss_dssp             HHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHH
T ss_pred             HHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCC
Confidence                           0124456889999999999999998864

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.18  E-value=1e-06  Score=67.84  Aligned_cols=68  Identities=19%  Similarity=0.203  Sum_probs=55.6

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-----------------------------CCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-----------------------------IPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-----------------------------~~~y~v  193 (228)
                      +++|||+|    |++|+.+.+.|.+++++|+  ++.|+.|+.+..                             ...|++
T Consensus        32 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  111 (143)
T 4fo5_A           32 GRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL  111 (143)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTG
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcCC
Confidence            57899998    9999999999999999996  488988877631                             134889


Q ss_pred             CCCcEEEEEE-CCEEEeEEeCccc
Q psy14385        194 KNLPTLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       194 ~~LPTllvYk-~G~~v~~lvG~~~  216 (228)
                      ..+||++++. +|+++.+.++..+
T Consensus       112 ~~~P~~~lid~~G~i~~~~~~~~~  135 (143)
T 4fo5_A          112 RKGFKNFLINDEGVIIAANVTPEK  135 (143)
T ss_dssp             GGCCCEEEECTTSBEEEESCCHHH
T ss_pred             CCCCcEEEECCCCEEEEccCCHHH
Confidence            9999888886 8999988766443

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.18  E-value=6.6e-07  Score=66.74  Aligned_cols=71  Identities=14%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             hhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------CCCCCCCCCCcEEEEEECC
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTT--------CIPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------~~~~y~v~~LPTllvYk~G  205 (228)
                      .+++..+.+.   ..|++++   |++|+.+.+.|..++.+|   .|+.|+.+.        ....|++.++||+  |.+|
T Consensus        10 ~~~~~~~~~~---~~vv~f~a~~C~~C~~~~~~l~~~~~~~---~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g   81 (116)
T 2e7p_A           10 LKKAKELASS---APVVVFSKTYCGYCNRVKQLLTQVGASY---KVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGG   81 (116)
T ss_dssp             HHHHHHHHTS---SSEEEEECTTCHHHHHHHHHHHHHTCCC---EEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred             HHHHHHHHcC---CCEEEEECCCChhHHHHHHHHHHcCCCe---EEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence            4566666543   3566644   999999999999998765   778887765        2367999999999  6799


Q ss_pred             EEEeEEeCcc
Q psy14385        206 KMQSQMVGPD  215 (228)
Q Consensus       206 ~~v~~lvG~~  215 (228)
                      +.++.+.|+.
T Consensus        82 ~~v~~~~~~~   91 (116)
T 2e7p_A           82 KQIGGCDTVV   91 (116)
T ss_dssp             EEEECHHHHH
T ss_pred             EEECChHHHH
Confidence            9998877664

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.17  E-value=3.1e-07  Score=69.41  Aligned_cols=57  Identities=14%  Similarity=0.232  Sum_probs=43.7

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC----C---CCCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST----T---CIPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad----~---~~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      .+||.|    |++|+.+.+.|.++|.+|+   ++.++.+    .   ....|+++++||+++  +|+.   +.|..
T Consensus        14 ~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~G~~   81 (106)
T 3kp8_A           14 IGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVR   81 (106)
T ss_dssp             HTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EESCC
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ecCCC
Confidence            345555    9999999999999998886   5555532    2   246899999999877  9974   66654

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.16  E-value=1.4e-06  Score=69.88  Aligned_cols=67  Identities=10%  Similarity=0.165  Sum_probs=53.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--c------EEEEEeCCC-C---CCC----------------------
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--T------KFIKSISTT-C---IPN----------------------  190 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~------KFvkI~ad~-~---~~~----------------------  190 (228)
                      +++|||+|    |++|+.+.+.|.+++++|++  +      .|+.|+.+. .   ...                      
T Consensus        59 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  138 (183)
T 3lwa_A           59 NQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAAS  138 (183)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGGG
T ss_pred             CCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHHH
Confidence            46888888    99999999999999999864  7      999999876 1   111                      


Q ss_pred             ---CCCCCCcE-EEEEECCEEEeEEeCcc
Q psy14385        191 ---YPDKNLPT-LFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       191 ---y~v~~LPT-llvYk~G~~v~~lvG~~  215 (228)
                         |.+..+|+ +++.++|+++..+.|..
T Consensus       139 ~~~~~v~~~P~~~lid~~G~i~~~~~g~~  167 (183)
T 3lwa_A          139 LGGVPASVIPTTIVLDKQHRPAAVFLREV  167 (183)
T ss_dssp             TTTCCTTCCSEEEEECTTSCEEEEECSCC
T ss_pred             hccCCCCCCCeEEEECCCCcEEEEEcCCC
Confidence               36899995 55668999999998864

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.42  E-value=3e-07  Score=70.00  Aligned_cols=61  Identities=20%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCC----------------------------CCCCCCCC
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTT----------------------------CIPNYPDK  194 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~----------------------------~~~~y~v~  194 (228)
                      +|||+|    |++|+.+.+.|.+++++|    +++.|+.|+.+.                            ....|++.
T Consensus        28 ~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  107 (143)
T 2lus_A           28 IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT  107 (143)
Confidence            788888    999999999999999998    567787776542                            23678999


Q ss_pred             CCcEEEEEE-CCEEEeEE
Q psy14385        195 NLPTLFIYF-EGKMQSQM  211 (228)
Q Consensus       195 ~LPTllvYk-~G~~v~~l  211 (228)
                      ++||++++. +|+++...
T Consensus       108 ~~P~~~lid~~G~i~~~~  125 (143)
T 2lus_A          108 GIPALVIVKKDGTLISMN  125 (143)
Confidence            999999997 89988874

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.12  E-value=6.4e-06  Score=65.96  Aligned_cols=68  Identities=19%  Similarity=0.233  Sum_probs=55.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC--------CCCCCC---------------------
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC--------IPNYPD---------------------  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~--------~~~y~v---------------------  193 (228)
                      +++|||+|    |++|+.+.+.|.+++++|.  ++.|+.|+.+..        ...|++                     
T Consensus        60 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  139 (186)
T 1jfu_A           60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIG  139 (186)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTT
T ss_pred             CCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcccc
Confidence            46888888    9999999999999999997  689998887642        123333                     


Q ss_pred             --CCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        194 --KNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       194 --~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                        .++|+++++ ++|+++..+.|...
T Consensus       140 ~~~~~P~~~lid~~G~i~~~~~g~~~  165 (186)
T 1jfu_A          140 RALGMPTSVLVDPQGCEIATIAGPAE  165 (186)
T ss_dssp             CCSSSSEEEEECTTSBEEEEEESCCC
T ss_pred             ccCCCCEEEEECCCCCEEEEEecCCc
Confidence              389999998 89999999999754

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.11  E-value=3.3e-06  Score=66.38  Aligned_cols=67  Identities=15%  Similarity=0.245  Sum_probs=54.4

Q ss_pred             CceEEEEe----ccc-hHHHHHHHHHHHHhC------CCcEEEEEeCCC-------------------------------
Q psy14385        149 GIWVVLHF----IPL-CSLINNHLSELAAKF------PTTKFIKSISTT-------------------------------  186 (228)
Q Consensus       149 ~~~VVVhf----~~~-C~~l~~~L~~LA~ky------p~~KFvkI~ad~-------------------------------  186 (228)
                      +++|||+|    |++ |+...+.|.+++++|      .++.|+.|..+.                               
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ  105 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            46899988    998 999999999999998      479999888762                               


Q ss_pred             CCCCCCCCCCc---------------E-EEEEECCEEEeEEeCcc
Q psy14385        187 CIPNYPDKNLP---------------T-LFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       187 ~~~~y~v~~LP---------------T-llvYk~G~~v~~lvG~~  215 (228)
                      ....|++...|               + ++|-++|+++..+.|..
T Consensus       106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~  150 (171)
T 2rli_A          106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR  150 (171)
T ss_dssp             HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC
T ss_pred             HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC
Confidence            12358888888               5 55568999999998864

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.08  E-value=3.6e-06  Score=69.68  Aligned_cols=74  Identities=15%  Similarity=0.087  Sum_probs=56.6

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe----ccchHHHHH-HH--HHHHHhCC-CcEEEEEeCCCC---CCCC--------CCCC
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINN-HL--SELAAKFP-TTKFIKSISTTC---IPNY--------PDKN  195 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~-~L--~~LA~kyp-~~KFvkI~ad~~---~~~y--------~v~~  195 (228)
                      +.+.|.....+   +++|+|+|    |++|+.|.+ .|  .++|+.+. ++.|++||.++.   ...|        ++.+
T Consensus        28 ~~ea~~~A~~~---~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g  104 (173)
T 3ira_A           28 GEEAFEKARKE---NKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGG  104 (173)
T ss_dssp             SHHHHHHHHHH---TCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHh---CCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCC
Confidence            45566555543   36899999    999999998 33  46666653 588999999974   3456        8999


Q ss_pred             CcEEEEEE-CCEEEeEE
Q psy14385        196 LPTLFIYF-EGKMQSQM  211 (228)
Q Consensus       196 LPTllvYk-~G~~v~~l  211 (228)
                      +||+++|. +|+++...
T Consensus       105 ~Pt~v~l~~dG~~v~~~  121 (173)
T 3ira_A          105 WPLNIIMTPGKKPFFAG  121 (173)
T ss_dssp             SSEEEEECTTSCEEEEE
T ss_pred             CcceeeECCCCCceeee
Confidence            99999997 99998763

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.05  E-value=3.1e-06  Score=59.57  Aligned_cols=51  Identities=8%  Similarity=0.143  Sum_probs=43.5

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-------CCCCCC--CCCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTT-------CIPNYP--DKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-------~~~~y~--v~~LPTllvYk~G~~v~  209 (228)
                      |+.|+.+.+.|++++.+|+++.|..+|.+.       ....|+  +..+||+  |.+|+.+.
T Consensus        11 C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~   70 (85)
T 1ego_A           11 CPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG   70 (85)
T ss_dssp             STHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE
Confidence            999999999999999999999999998753       234577  8999998  56998765

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.04  E-value=3.5e-06  Score=76.76  Aligned_cols=67  Identities=16%  Similarity=0.276  Sum_probs=57.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC------------------------------CCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT------------------------------CIPNYP  192 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~------------------------------~~~~y~  192 (228)
                      +++|||+|    |++|+.+.+.|.+|+++|+  ++.|+.|+.+.                              ....|.
T Consensus        82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~yg  161 (352)
T 2hyx_A           82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR  161 (352)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTT
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcC
Confidence            46888888    9999999999999999996  48999997642                              235699


Q ss_pred             CCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        193 DKNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       193 v~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      +..+||++++ ++|+++..+.|..
T Consensus       162 V~~~Pt~~lID~~G~Iv~~~~G~~  185 (352)
T 2hyx_A          162 NRYWPAEYLIDATGTVRHIKFGEG  185 (352)
T ss_dssp             CCEESEEEEECTTSBEEEEEESBC
T ss_pred             CCccCEEEEEeCCCeEEEEEcCCC
Confidence            9999998888 8999999999864

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.04  E-value=4.7e-06  Score=67.01  Aligned_cols=62  Identities=15%  Similarity=0.253  Sum_probs=53.2

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCC--------------------------------CCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTT--------------------------------CIPNY  191 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~--------------------------------~~~~y  191 (228)
                      +++|||+|    |++|+.+.+.|.+|+++|.+ +.|+.|+.+.                                ....|
T Consensus        33 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  112 (188)
T 2cvb_A           33 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAY  112 (188)
T ss_dssp             SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHT
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHc
Confidence            46888888    99999999999999999987 8999988731                                13568


Q ss_pred             CCCCCcEEEEE-ECCEEEeE
Q psy14385        192 PDKNLPTLFIY-FEGKMQSQ  210 (228)
Q Consensus       192 ~v~~LPTllvY-k~G~~v~~  210 (228)
                      ++..+||++++ ++|+++..
T Consensus       113 ~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A          113 RALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             TCCEESEEEEECTTCBEEEE
T ss_pred             CCCCCCeEEEECCCCcEEEE
Confidence            99999999999 88999877

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.04  E-value=7.3e-06  Score=63.77  Aligned_cols=67  Identities=15%  Similarity=0.243  Sum_probs=54.9

Q ss_pred             CceEEEEe----ccc-hHHHHHHHHHHHHhC------CCcEEEEEeCCC-------------------------------
Q psy14385        149 GIWVVLHF----IPL-CSLINNHLSELAAKF------PTTKFIKSISTT-------------------------------  186 (228)
Q Consensus       149 ~~~VVVhf----~~~-C~~l~~~L~~LA~ky------p~~KFvkI~ad~-------------------------------  186 (228)
                      +++|||+|    |++ |+...+.|.+++++|      +++.|+-|..+.                               
T Consensus        23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  102 (164)
T 2ggt_A           23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQ  102 (164)
T ss_dssp             TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHH
T ss_pred             CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            46889988    998 999999999999988      378888887653                               


Q ss_pred             CCCCCCCCCCc----------------EEEEEECCEEEeEEeCcc
Q psy14385        187 CIPNYPDKNLP----------------TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       187 ~~~~y~v~~LP----------------TllvYk~G~~v~~lvG~~  215 (228)
                      ....|++..+|                ++++-++|+++..+.|..
T Consensus       103 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~  147 (164)
T 2ggt_A          103 VARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK  147 (164)
T ss_dssp             HHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTC
T ss_pred             HHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCC
Confidence            23468899999                666678999999998854

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.03  E-value=1.8e-05  Score=70.20  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCC--C---CCCCCCCCC
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSIST--T---CIPNYPDKN  195 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad--~---~~~~y~v~~  195 (228)
                      ...+.|.+++.++|...+....  ..++|.|    |++|+.+.+.|.++|++|. .+.|+.+|++  .   ....|++..
T Consensus       114 ~~~p~v~~~~~~~~~~~~~~~~--~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~  191 (361)
T 3uem_A          114 NQLPLVIEFTEQTAPKIFGGEI--KTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKK  191 (361)
T ss_dssp             HSSCSEEECSTTTHHHHHSCSC--CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCT
T ss_pred             cCCCcceecCcccHHHHhcCCC--CcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCc
Confidence            3457799999999987765432  3455656    9999999999999999996 5999999998  3   257899987


Q ss_pred             --CcEEEEEECCEEEeEEe
Q psy14385        196 --LPTLFIYFEGKMQSQMV  212 (228)
Q Consensus       196 --LPTllvYk~G~~v~~lv  212 (228)
                        +||+++|..|.....+.
T Consensus       192 ~~~P~~~~~~~~~~~~ky~  210 (361)
T 3uem_A          192 EECPAVRLITLEEEMTKYK  210 (361)
T ss_dssp             TTCSEEEEEECC--CCEEC
T ss_pred             cCCccEEEEEcCCcccccC
Confidence              99999999976655554

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.01  E-value=2.2e-06  Score=63.04  Aligned_cols=52  Identities=19%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+++.   |++|+.+.+.|++++..|    |.+||+++.   ...|+++ +||+++ +||+.+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~   60 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD   60 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe
Confidence            44544   999999999999998876    789999874   4679998 999999 9999885

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.01  E-value=6.4e-06  Score=66.29  Aligned_cols=65  Identities=15%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCcE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLPT  198 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LPT  198 (228)
                      +++|||+|    |++|+.+.+.|.+++++  ++.|+.|+.+.                          ....|++.++|+
T Consensus        58 gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  135 (176)
T 3kh7_A           58 GKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPE  135 (176)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCE
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCe
Confidence            35788888    99999999999999998  78999888532                          124578999996


Q ss_pred             EEEE-ECCEEEeEEeCcc
Q psy14385        199 LFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       199 llvY-k~G~~v~~lvG~~  215 (228)
                      ++++ ++|+++..+.|..
T Consensus       136 ~~lid~~G~i~~~~~g~~  153 (176)
T 3kh7_A          136 TYLIDKQGIIRHKIVGVV  153 (176)
T ss_dssp             EEEECTTCBEEEEEESCC
T ss_pred             EEEECCCCeEEEEEcCCC
Confidence            6555 8999999999974

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=1.1e-06  Score=68.74  Aligned_cols=67  Identities=16%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHH-HHHhCC---CcEEEEEeCCCC---CCCCC------------------------C
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSE-LAAKFP---TTKFIKSISTTC---IPNYP------------------------D  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~-LA~kyp---~~KFvkI~ad~~---~~~y~------------------------v  193 (228)
                      +++|||+|    |++|+.+.+.|.+ ++.+|.   ++.|+.|+.+..   ...|.                        +
T Consensus        33 gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  112 (159)
T 2ls5_A           33 GKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRD  112 (159)
Confidence            45788888    9999999999998 988886   688888876642   22222                        5


Q ss_pred             CCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        194 KNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       194 ~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      .++||++++ ++|+++..+.|..
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~~  135 (159)
T 2ls5_A          113 AGITRNVLIDREGKIVKLTRLYN  135 (159)
Confidence            679999999 8999999988854

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=97.93  E-value=3.3e-06  Score=59.61  Aligned_cols=56  Identities=14%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCC-CcEEEEEeCC-C---CCCCCCCCCCcEEEEEECCEEEe
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFP-TTKFIKSIST-T---CIPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad-~---~~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |++++   |++|+.+.+.|++++.++. .+.|++|+.+ .   .+..|+++++||+++  ||+.+.
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~   67 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH   67 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE
Confidence            55555   9999999999999998885 5677777764 2   246799999999987  998653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=97.88  E-value=5.8e-06  Score=66.64  Aligned_cols=62  Identities=19%  Similarity=0.301  Sum_probs=52.2

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC--------------------------------CCCCCC
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT--------------------------------CIPNYP  192 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~--------------------------------~~~~y~  192 (228)
                      +|||+|    |++|+.+.+.|.+++++|.  ++.|+.|+.+.                                ....|+
T Consensus        48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  127 (196)
T 2ywi_A           48 ATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYD  127 (196)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhC
Confidence            488888    9999999999999999996  48999998731                                135688


Q ss_pred             CCCCcEEEEE-ECCEEEeEEe
Q psy14385        193 DKNLPTLFIY-FEGKMQSQMV  212 (228)
Q Consensus       193 v~~LPTllvY-k~G~~v~~lv  212 (228)
                      +..+||++++ ++|+++....
T Consensus       128 v~~~P~~~lid~~G~i~~~~~  148 (196)
T 2ywi_A          128 AACTPDFYIFDRDLKCVYRGQ  148 (196)
T ss_dssp             CCEESEEEEEETTCBEEEEEC
T ss_pred             CCCCCeEEEEcCCCeEEEccc
Confidence            9999999999 6999998743

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.84  E-value=1.4e-05  Score=63.03  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=54.5

Q ss_pred             ce-EEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC------------------------CCCCCCCCC--
Q psy14385        150 IW-VVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT------------------------CIPNYPDKN--  195 (228)
Q Consensus       150 ~~-VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~------------------------~~~~y~v~~--  195 (228)
                      .+ |||+|     |++|+...+.|.+++++|.  ++.|+-|..+.                        ....|++.+  
T Consensus        29 k~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  108 (161)
T 3drn_A           29 KHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFI  108 (161)
T ss_dssp             TSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSS
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcC
Confidence            44 88877     9999999999999999995  48999888762                        135688988  


Q ss_pred             --CcEEEEE-ECCEEEeEEeCc
Q psy14385        196 --LPTLFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       196 --LPTllvY-k~G~~v~~lvG~  214 (228)
                        +|+++++ ++|+++..+.|.
T Consensus       109 ~~~P~~~lid~~G~i~~~~~g~  130 (161)
T 3drn_A          109 LPARITFVIDKKGIIRHIYNSQ  130 (161)
T ss_dssp             SCCCEEEEECTTSBEEEEEECS
T ss_pred             cccceEEEECCCCEEEEEEecC
Confidence              9988888 699999999993

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=97.80  E-value=2e-05  Score=63.64  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=57.6

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC----------------------------CCCCCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT----------------------------CIPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~----------------------------~~~~y~v  193 (228)
                      +++|||+|     |++|+...+.|.+++.+|.  ++.|+.|..+.                            ....|++
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  110 (187)
T 1we0_A           31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV  110 (187)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred             CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCC
Confidence            46888888     9999999999999999986  68999988763                            1235788


Q ss_pred             C------CCcEEEEE-ECCEEEeEEeCcccc
Q psy14385        194 K------NLPTLFIY-FEGKMQSQMVGPDEF  217 (228)
Q Consensus       194 ~------~LPTllvY-k~G~~v~~lvG~~~~  217 (228)
                      .      .+|+++++ ++|+++..++|....
T Consensus       111 ~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~  141 (187)
T 1we0_A          111 LNEETGLADRGTFIIDPDGVIQAIEINADGI  141 (187)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTS
T ss_pred             CcCCCCceeeEEEEECCCCeEEEEEecCCCC
Confidence            7      89999999 899999999987543

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=97.74  E-value=2.7e-05  Score=60.60  Aligned_cols=65  Identities=14%  Similarity=0.153  Sum_probs=53.7

Q ss_pred             eEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC--------------------------CCCCCCCC---
Q psy14385        151 WVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT--------------------------CIPNYPDK---  194 (228)
Q Consensus       151 ~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~--------------------------~~~~y~v~---  194 (228)
                      +|||+|     |++|+...+.|.+++++|.  ++.|+.|..+.                          ....|++.   
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~  117 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ  117 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence            777777     9999999999999999994  68999887753                          12457887   


Q ss_pred             -CCc---EEEEEECCEEEeEEeCcc
Q psy14385        195 -NLP---TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       195 -~LP---TllvYk~G~~v~~lvG~~  215 (228)
                       ++|   ++++-++|+++...+|..
T Consensus       118 ~~~p~~~~~lid~~G~i~~~~~g~~  142 (160)
T 1xvw_A          118 AGIANRGTFVVDRSGIIRFAEMKQP  142 (160)
T ss_dssp             TTEECSEEEEECTTSBEEEEEECCT
T ss_pred             CCCeeeeEEEECCCCeEEEEEecCC
Confidence             999   667778999999999864

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=97.72  E-value=1.4e-05  Score=66.69  Aligned_cols=62  Identities=19%  Similarity=0.359  Sum_probs=51.8

Q ss_pred             Cce-EEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC--------------------------------CCC
Q psy14385        149 GIW-VVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT--------------------------------CIP  189 (228)
Q Consensus       149 ~~~-VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~--------------------------------~~~  189 (228)
                      +++ |||+|    |++|+.+.+.|.+|+++|.+  +.|+.|+.+.                                ...
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  137 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK  137 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence            344 88888    99999999999999999964  8999998841                                235


Q ss_pred             CCCCCCCcEEEEE-ECCEEEeE
Q psy14385        190 NYPDKNLPTLFIY-FEGKMQSQ  210 (228)
Q Consensus       190 ~y~v~~LPTllvY-k~G~~v~~  210 (228)
                      .|++..+|+++++ ++|+++.+
T Consensus       138 ~~~v~~~P~~~liD~~G~i~~~  159 (218)
T 3u5r_E          138 AYGAACTPDFFLYDRERRLVYH  159 (218)
T ss_dssp             HHTCCEESEEEEECTTCBEEEE
T ss_pred             HcCCCCCCeEEEECCCCcEEEe
Confidence            6899999999999 89998854

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.71  E-value=0.00011  Score=59.01  Aligned_cols=37  Identities=11%  Similarity=0.182  Sum_probs=32.2

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad  185 (228)
                      +++|||+|    |++|+...+.|.+++++|.+  +.|+.|+.+
T Consensus        47 gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           47 GFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            46888888    99999999999999999964  899988754

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.70  E-value=3e-05  Score=63.19  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=56.5

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC----------------------------CCCCCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT----------------------------CIPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~----------------------------~~~~y~v  193 (228)
                      +++|||+|     |++|+...+.|.+++++|.  ++.|+.|..+.                            ....|++
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  124 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  124 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence            46888888     9999999999999999996  68999998763                            0134778


Q ss_pred             C-----CCcEEEEE-ECCEEEeEEeCccc
Q psy14385        194 K-----NLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       194 ~-----~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      .     .+|+++++ ++|+++..++|...
T Consensus       125 ~~~~g~~~P~~~lid~~G~i~~~~~g~~~  153 (195)
T 2bmx_A          125 LNADGVADRVTFIVDPNNEIQFVSATAGS  153 (195)
T ss_dssp             BCTTSSBCEEEEEECTTSBEEEEEEECTT
T ss_pred             cccCCCccceEEEEcCCCeEEEEEecCCC
Confidence            7     89999999 69999999998653

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.67  E-value=7e-05  Score=59.38  Aligned_cols=66  Identities=12%  Similarity=0.085  Sum_probs=51.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC--------C------CC--------------------
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST--------T------CI--------------------  188 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad--------~------~~--------------------  188 (228)
                      +++|||.|    |++|+ ..+.|.+++++|.  ++.|+.|+.+        .      ..                    
T Consensus        32 Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  110 (171)
T 3cmi_A           32 GKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGN  110 (171)
T ss_dssp             TCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSSTT
T ss_pred             CCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCcc
Confidence            46888888    99999 9999999999996  4889888642        0      01                    


Q ss_pred             ----------CCCCCCCCc-------EEEEEECCEEEeEEeCcc
Q psy14385        189 ----------PNYPDKNLP-------TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       189 ----------~~y~v~~LP-------TllvYk~G~~v~~lvG~~  215 (228)
                                ..|++.++|       +++|-++|+++..+.|..
T Consensus       111 ~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~  154 (171)
T 3cmi_A          111 EDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLT  154 (171)
T ss_dssp             BCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTS
T ss_pred             chHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCC
Confidence                      136788899       566669999999998854

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.66  E-value=2.2e-05  Score=58.36  Aligned_cols=57  Identities=19%  Similarity=0.260  Sum_probs=44.7

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC--CC---CCCCCCCCCcEEEEEECCEEEeEEeCc
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST--TC---IPNYPDKNLPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad--~~---~~~y~v~~LPTllvYk~G~~v~~lvG~  214 (228)
                      ++|+.|    |++|+.+.+.|++++..   +.|.++|++  ..   ...|+ ..+|++  |.+|+.+ .+.|+
T Consensus        17 ~~v~~f~~~~C~~C~~~~~~L~~l~~~---i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~   82 (100)
T 1wjk_A           17 PVLTLFTKAPCPLCDEAKEVLQPYKDR---FILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRV   82 (100)
T ss_dssp             CEEEEEECSSCHHHHHHHHHTSTTSSS---SEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSC
T ss_pred             CEEEEEeCCCCcchHHHHHHHHHhhhC---CeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCC
Confidence            456666    99999999999988754   899999998  42   46799 999986  5799876 44454

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=97.66  E-value=4.6e-05  Score=61.82  Aligned_cols=68  Identities=16%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC-------------------------------CCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTT-------------------------------CIPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~-------------------------------~~~~  190 (228)
                      +++|||+|     |++|+...+.|.+++.+|  .++.|+.|+.+.                               ....
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  110 (192)
T 2h01_A           31 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS  110 (192)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHH
Confidence            35888888     999999999999999999  579999988763                               0134


Q ss_pred             CCCC-----CCcEEEEE-ECCEEEeEEeCccc
Q psy14385        191 YPDK-----NLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       191 y~v~-----~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      |++.     .+|+++++ ++|+++...+|...
T Consensus       111 ~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~  142 (192)
T 2h01_A          111 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLA  142 (192)
T ss_dssp             TTCEETTTEECCEEEEECTTSBEEEEEEGGGS
T ss_pred             hCCcCcCCceeeEEEEEcCCCEEEEEEeCCCC
Confidence            7787     89999999 89999999988543

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=97.64  E-value=0.00018  Score=56.05  Aligned_cols=37  Identities=8%  Similarity=0.046  Sum_probs=32.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad  185 (228)
                      +++|||+|    |++|+...+.|.+++++|.+  +.|+.|+.+
T Consensus        31 gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d   73 (169)
T 2v1m_A           31 GHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCN   73 (169)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            46899988    99999999999999999964  899988764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.61  E-value=0.00012  Score=57.02  Aligned_cols=37  Identities=8%  Similarity=0.100  Sum_probs=32.5

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad  185 (228)
                      +++|||+|    |++|+...+.|.+++++|.+  +.|+.|+.+
T Consensus        32 gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d   74 (170)
T 2p5q_A           32 GKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCN   74 (170)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECC
Confidence            46899988    99999999999999999964  899999764

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=97.61  E-value=4.9e-05  Score=62.38  Aligned_cols=70  Identities=19%  Similarity=0.282  Sum_probs=56.9

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC-------------------------------CCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTT-------------------------------CIPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~-------------------------------~~~~  190 (228)
                      +++|||+|     |++|+...+.|.+++.+|  .++.|+.|+.+.                               ....
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            35888888     999999999999999999  569999998763                               0134


Q ss_pred             CCCC------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        191 YPDK------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       191 y~v~------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      |++.      .+|+++++ ++|+++...+|....+
T Consensus       116 ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~  150 (202)
T 1uul_A          116 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVG  150 (202)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBC
T ss_pred             cCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCC
Confidence            6777      89988888 7999999998876544

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=97.60  E-value=6.2e-05  Score=61.33  Aligned_cols=68  Identities=15%  Similarity=0.117  Sum_probs=56.1

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC-------------------------------CCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT-------------------------------CIPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~-------------------------------~~~~  190 (228)
                      +++|||+|     |++|+...+.|.+++.+|.  ++.|+.|+.+.                               ....
T Consensus        33 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  112 (198)
T 1zof_A           33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD  112 (198)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHH
Confidence            46888888     9999999999999999985  58999888763                               1235


Q ss_pred             CCCC-----CCcEEEEE-ECCEEEeEEeCccc
Q psy14385        191 YPDK-----NLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       191 y~v~-----~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      |++.     .+|+++++ ++|+++..++|...
T Consensus       113 ~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~  144 (198)
T 1zof_A          113 YDVLFEEAIALRGAFLIDKNMKVRHAVINDLP  144 (198)
T ss_dssp             TTCEETTTEECEEEEEEETTTEEEEEEEESSS
T ss_pred             hCCcccCCcccceEEEECCCCEEEEEEecCCC
Confidence            7787     89988888 69999999998643

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=97.56  E-value=0.0001  Score=61.86  Aligned_cols=69  Identities=22%  Similarity=0.277  Sum_probs=57.2

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC-------------------------------CCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTT-------------------------------CIPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~-------------------------------~~~~  190 (228)
                      +++|||+|     |+.|+...+.|.+++.+|  .++.|+-|..+.                               ....
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            36888888     999999999999999999  579999998753                               0134


Q ss_pred             CCCC------CCcEEEEE-ECCEEEeEEeCcccc
Q psy14385        191 YPDK------NLPTLFIY-FEGKMQSQMVGPDEF  217 (228)
Q Consensus       191 y~v~------~LPTllvY-k~G~~v~~lvG~~~~  217 (228)
                      |++.      .+|+++++ ++|+++...+|....
T Consensus       136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~  169 (220)
T 1zye_A          136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPV  169 (220)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTC
T ss_pred             hCCeecCCCcccceEEEECCCCEEEEEEecCCCC
Confidence            7777      89999999 899999999886443

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.55  E-value=3.1e-05  Score=56.80  Aligned_cols=58  Identities=19%  Similarity=0.278  Sum_probs=43.4

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------CCCCCCCCCCcEEEEEECCEEEeE
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTT--------CIPNYPDKNLPTLFIYFEGKMQSQ  210 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------~~~~y~v~~LPTllvYk~G~~v~~  210 (228)
                      .|+++.   |++|+.+.+.|..++..|++..++.|+.+.        ....+++..+||+  |.+|+.++.
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~g   81 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIGG   81 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEES
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEec
Confidence            455555   999999999999999888875555555431        2356889999997  569987654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.51  E-value=0.00023  Score=57.00  Aligned_cols=68  Identities=16%  Similarity=0.110  Sum_probs=51.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC-------------------CCCCCCC----------
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT-------------------CIPNYPD----------  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~-------------------~~~~y~v----------  193 (228)
                      |++|||+|    |++|+...+.|.+|+++|.+  +.|+.|..+.                   .-..|++          
T Consensus        38 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  117 (180)
T 3kij_A           38 GKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSE  117 (180)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTT
T ss_pred             CCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCcc
Confidence            46899988    99999999999999999964  8888887542                   1112222          


Q ss_pred             ------------CCCc-----EEEEEECCEEEeEEeCccc
Q psy14385        194 ------------KNLP-----TLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       194 ------------~~LP-----TllvYk~G~~v~~lvG~~~  216 (228)
                                  ..+|     |++|-++|+++..+.|...
T Consensus       118 ~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~  157 (180)
T 3kij_A          118 GEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEP  157 (180)
T ss_dssp             CCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCC
T ss_pred             ccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCC
Confidence                        1256     6899999999999988654

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.51  E-value=0.00019  Score=58.18  Aligned_cols=67  Identities=7%  Similarity=-0.037  Sum_probs=52.9

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC--------------CC--------------------
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT--------------CI--------------------  188 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~--------------~~--------------------  188 (228)
                      +++|||+|    |++|+...+.|.+++++|.+  +.|+.|+.+.              ..                    
T Consensus        48 Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~  127 (190)
T 2vup_A           48 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGEN  127 (190)
T ss_dssp             TSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSSTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCccc
Confidence            46888888    99999999999999999964  8999887651              00                    


Q ss_pred             ----------CCCCCCCCc-------EEEEEECCEEEeEEeCcc
Q psy14385        189 ----------PNYPDKNLP-------TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       189 ----------~~y~v~~LP-------TllvYk~G~~v~~lvG~~  215 (228)
                                ..|++.++|       +++|.++|+++..+.|..
T Consensus       128 ~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~  171 (190)
T 2vup_A          128 AHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGA  171 (190)
T ss_dssp             BCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTC
T ss_pred             ccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCC
Confidence                      014677788       666779999999998854

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.47  E-value=7.3e-05  Score=66.72  Aligned_cols=68  Identities=13%  Similarity=0.168  Sum_probs=47.5

Q ss_pred             hhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEe---C-CC---CCCCCCCCCCcEEEEEECCE
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSI---S-TT---CIPNYPDKNLPTLFIYFEGK  206 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~---a-d~---~~~~y~v~~LPTllvYk~G~  206 (228)
                      ..+.+.+++.    .||.++   |++|+.+.|.|+++|++++   +++++   . ++   ...+|+++++||+++  ||+
T Consensus       190 ~~la~~l~~~----~vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~  260 (291)
T 3kp9_A          190 VGLAAHLRQI----GGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR  260 (291)
T ss_dssp             HHHHHHHHHT----TCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE
T ss_pred             HHHHHHhCCC----CEEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE
Confidence            3455556544    244444   9999999999999998875   45554   2 21   246899999999655  997


Q ss_pred             EEeEEeCccc
Q psy14385        207 MQSQMVGPDE  216 (228)
Q Consensus       207 ~v~~lvG~~~  216 (228)
                      .   +.|...
T Consensus       261 ~---~~G~~~  267 (291)
T 3kp9_A          261 T---YTGVRS  267 (291)
T ss_dssp             E---EESCCC
T ss_pred             E---ecCCCC
Confidence            4   677653

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.41  E-value=0.00028  Score=56.44  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=51.0

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-------------------------CCCCCCCCCC--
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTT-------------------------CIPNYPDKNL--  196 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-------------------------~~~~y~v~~L--  196 (228)
                      +++|||+|     |++|+...+.|.+++++ .++.|+.|+.+.                         ....|++...  
T Consensus        44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~  122 (175)
T 1xvq_A           44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADG  122 (175)
T ss_dssp             TSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSS
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccccc
Confidence            35788888     99999999999999999 889999998872                         0134677666  


Q ss_pred             -------cEEEEE-ECCEEEeEEeCc
Q psy14385        197 -------PTLFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       197 -------PTllvY-k~G~~v~~lvG~  214 (228)
                             |+.+++ ++|+++..++|.
T Consensus       123 ~~~g~~~p~~~lid~~G~I~~~~~g~  148 (175)
T 1xvq_A          123 PMAGLLARAIVVIGADGNVAYTELVP  148 (175)
T ss_dssp             TTTTSBCSEEEEECTTSBEEEEEECS
T ss_pred             ccCCcccceEEEECCCCeEEEEEECC
Confidence                   655554 799999999863

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.39  E-value=0.00028  Score=57.05  Aligned_cols=37  Identities=11%  Similarity=-0.027  Sum_probs=32.2

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad  185 (228)
                      +++|||+|    |++|+...+.|.+++++|.+  +.|+-|..+
T Consensus        46 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   88 (187)
T 3dwv_A           46 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSN   88 (187)
T ss_dssp             TSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBC
T ss_pred             CCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECc
Confidence            46888888    99999999999999999964  899888754

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.37  E-value=0.0002  Score=59.87  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=55.5

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC-------------------------------CCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTT-------------------------------CIPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~-------------------------------~~~~  190 (228)
                      +++|||+|     |+.|+...+.|.+++++|  .++.|+-|..+.                               ....
T Consensus        52 gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~  131 (213)
T 2i81_A           52 KKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKD  131 (213)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHH
Confidence            46888888     999999999999999999  579999887763                               0134


Q ss_pred             CCCC-----CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        191 YPDK-----NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       191 y~v~-----~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      |++.     .+|+++++ ++|+++...+|....+
T Consensus       132 ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~  165 (213)
T 2i81_A          132 YNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIG  165 (213)
T ss_dssp             TTCEETTTEECEEEEEECTTSBEEEEEEECTTCC
T ss_pred             hCCccccCCcccEEEEECCCCEEEEEEecCCCCC
Confidence            6777     78977776 7899999998865443

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.35  E-value=0.00011  Score=58.49  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEe
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSI  183 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~  183 (228)
                      ..+|+.|    ||.|+.+.+.|..+.++|++++|+-.+
T Consensus        23 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~   60 (175)
T 3gyk_A           23 DVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYRE   60 (175)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            4556655    999999999999999999998887655

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=97.33  E-value=0.00026  Score=56.82  Aligned_cols=67  Identities=9%  Similarity=0.017  Sum_probs=51.5

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC----------C----CC-------------------
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT----------C----IP-------------------  189 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~----------~----~~-------------------  189 (228)
                      +++|||.|    |++|+...+.|.+++++|.+  +.|+.|+.+.          .    ..                   
T Consensus        49 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~  128 (181)
T 2p31_A           49 GSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTG  128 (181)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTT
T ss_pred             CCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCcc
Confidence            46888888    99999999999999999964  8999887541          0    01                   


Q ss_pred             -----CCCCCCCc--------EEEEEECCEEEeEEeCcc
Q psy14385        190 -----NYPDKNLP--------TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       190 -----~y~v~~LP--------TllvYk~G~~v~~lvG~~  215 (228)
                           .|.+..+|        +++|.++|+++..+.|..
T Consensus       129 ~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~  167 (181)
T 2p31_A          129 AHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTV  167 (181)
T ss_dssp             SCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTS
T ss_pred             chhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCC
Confidence                 11134578        778889999999998854

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.33  E-value=0.00025  Score=59.45  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=56.8

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------------CCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------------IPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------------~~~  190 (228)
                      +++|||+|     |++|+...+.|.+++++|.  ++.|+-|..+..                               ...
T Consensus        69 Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  148 (222)
T 3ztl_A           69 GKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKA  148 (222)
T ss_dssp             TSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHH
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHHH
Confidence            46888888     9999999999999999994  589998887730                               134


Q ss_pred             CCCC------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        191 YPDK------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       191 y~v~------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      |++.      .+|+++++ ++|+++..+.|....+
T Consensus       149 ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~  183 (222)
T 3ztl_A          149 YGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVG  183 (222)
T ss_dssp             TTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBC
T ss_pred             cCCeecCCCCccceEEEECCCCeEEEEEecCCCCC
Confidence            7777      88998888 7999999998876543

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.32  E-value=0.00026  Score=55.46  Aligned_cols=67  Identities=15%  Similarity=0.253  Sum_probs=51.1

Q ss_pred             CceEEEEe----cc-chHHHHHHHHHHHHhCC----CcEEEEEeCCC---C-------CC----C---------------
Q psy14385        149 GIWVVLHF----IP-LCSLINNHLSELAAKFP----TTKFIKSISTT---C-------IP----N---------------  190 (228)
Q Consensus       149 ~~~VVVhf----~~-~C~~l~~~L~~LA~kyp----~~KFvkI~ad~---~-------~~----~---------------  190 (228)
                      +++|||+|    |+ +|+...+.|.++.++|.    ++.|+-|+.+.   -       ..    .               
T Consensus        33 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~  112 (174)
T 1xzo_A           33 GEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEI  112 (174)
T ss_dssp             TCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHH
T ss_pred             CCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHH
Confidence            46788888    99 99999999999999885    38999988751   0       00    0               


Q ss_pred             ------------------CCCCCCcE-EEEEECCEEEeEEeCcc
Q psy14385        191 ------------------YPDKNLPT-LFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       191 ------------------y~v~~LPT-llvYk~G~~v~~lvG~~  215 (228)
                                        |.+..+|+ ++|-++|+++..+.|..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~  156 (174)
T 1xzo_A          113 EEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVE  156 (174)
T ss_dssp             HHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSS
T ss_pred             HHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCC
Confidence                              23567897 55558999999999975

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.31  E-value=0.00032  Score=55.08  Aligned_cols=67  Identities=13%  Similarity=0.133  Sum_probs=52.6

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------------------------CCCCCCCC--
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------------------------IPNYPDKN--  195 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------------------------~~~y~v~~--  195 (228)
                      +++|||+|     |++|+...+.|.+++++|+++.|+.|+.+..                          ...|++..  
T Consensus        44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~  123 (167)
T 2jsy_A           44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKE  123 (167)
T ss_dssp             TSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTT
T ss_pred             CCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcccc
Confidence            35788888     9999999999999999998899999987630                          02355554  


Q ss_pred             ----CcEEEEE-ECCEEEeEEeCcc
Q psy14385        196 ----LPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       196 ----LPTllvY-k~G~~v~~lvG~~  215 (228)
                          .|+++++ ++|+++...+|..
T Consensus       124 ~g~~~p~~~lid~~G~i~~~~~g~~  148 (167)
T 2jsy_A          124 LRLLARSVFVLDENGKVVYAEYVSE  148 (167)
T ss_dssp             TCSBCCEEEEECTTSCEEEEEECSB
T ss_pred             CCceeeEEEEEcCCCcEEEEEecCC
Confidence                3876666 6899999998864

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.25  E-value=0.00088  Score=53.90  Aligned_cols=37  Identities=11%  Similarity=0.143  Sum_probs=32.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad  185 (228)
                      +++|||.|    |++|+...+.|.+++++|.  ++.|+.|+.+
T Consensus        49 Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d   91 (185)
T 2gs3_A           49 GFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCN   91 (185)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence            46888888    9999999999999999996  4899988753

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.19  E-value=0.00027  Score=58.00  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             CceEEEEe----ccc-hHHHHHHHHHHHHhC-----CCcEEEEEeCCC-------------------------------C
Q psy14385        149 GIWVVLHF----IPL-CSLINNHLSELAAKF-----PTTKFIKSISTT-------------------------------C  187 (228)
Q Consensus       149 ~~~VVVhf----~~~-C~~l~~~L~~LA~ky-----p~~KFvkI~ad~-------------------------------~  187 (228)
                      +++|||+|    |++ |+...+.|.++..++     .++.|+-|..+.                               .
T Consensus        41 Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~  120 (200)
T 2b7k_A           41 GKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNA  120 (200)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHH
T ss_pred             CCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHH
Confidence            46888988    998 999999999966655     368888887662                               0


Q ss_pred             CCCCCCC-CCc----------------EEEEEECCEEEeEEeCcc
Q psy14385        188 IPNYPDK-NLP----------------TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       188 ~~~y~v~-~LP----------------TllvYk~G~~v~~lvG~~  215 (228)
                      ...|++. ..|                +++|-++|+++..+.|..
T Consensus       121 ~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~  165 (200)
T 2b7k_A          121 CKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNY  165 (200)
T ss_dssp             HHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTC
T ss_pred             HHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCC
Confidence            1235554 344                477889999999988753

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=97.10  E-value=0.0004  Score=56.05  Aligned_cols=77  Identities=12%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             hhHHHHHHhcC-CCceEEEEe----ccchHHHHHHH---HHHHHhC-CCcEEEEEeCCC-----CCCCCCCCCCcEEEEE
Q psy14385        137 DTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHL---SELAAKF-PTTKFIKSISTT-----CIPNYPDKNLPTLFIY  202 (228)
Q Consensus       137 edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L---~~LA~ky-p~~KFvkI~ad~-----~~~~y~v~~LPTllvY  202 (228)
                      .+|.+.+..+. .+++|+|.|    |..|+.|+...   ..+++.. .+..+++++.+.     ....|++.+.||++++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fl  108 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSIL  108 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEE
Confidence            45666554331 247999999    99999997654   3343332 267788898875     2478999999999999


Q ss_pred             EC--CEEEeEEeC
Q psy14385        203 FE--GKMQSQMVG  213 (228)
Q Consensus       203 k~--G~~v~~lvG  213 (228)
                      ..  |+.+..+.|
T Consensus       109 d~~~G~~l~~~~g  121 (153)
T 2dlx_A          109 DPRTGQKLVEWHQ  121 (153)
T ss_dssp             CTTTCCCCEEESS
T ss_pred             eCCCCcEeeecCC
Confidence            64  777777644

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.05  E-value=0.0042  Score=51.85  Aligned_cols=79  Identities=24%  Similarity=0.148  Sum_probs=61.7

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC-----CCCCCCCC-
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT-----CIPNYPDK-  194 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~-----~~~~y~v~-  194 (228)
                      ...+.|.+++.+++.......-  ..+++.|    |+.|..+.+.|..+|++|. .+.|+.++++.     ....|++. 
T Consensus       110 ~~~plv~e~t~~n~~~~~~~~~--~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~  187 (227)
T 4f9z_D          110 NSLHMVTEYNPVTVIGLFNSVI--QIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKE  187 (227)
T ss_dssp             HCCCSEEECCHHHHHHHHHSSC--CEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCG
T ss_pred             hCCCceeecCcccHHHHhccCC--ceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCc
Confidence            3577899999999887665332  3455555    7789999999999999996 59999999973     24678887 


Q ss_pred             -CCcEEEEEECCE
Q psy14385        195 -NLPTLFIYFEGK  206 (228)
Q Consensus       195 -~LPTllvYk~G~  206 (228)
                       .+|+++++..+.
T Consensus       188 ~~~P~~~i~~~~~  200 (227)
T 4f9z_D          188 SQLPALAIYQTLD  200 (227)
T ss_dssp             GGCSEEEEEESSS
T ss_pred             ccCCEEEEEECCC
Confidence             899999998654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=96.95  E-value=0.0011  Score=55.45  Aligned_cols=72  Identities=15%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             ceEEe-ChhhHHHHHHhcCCCceEEEEe-ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385        130 RVLEI-NGDTYVQEVNNAGEGIWVVLHF-IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       130 ~V~eI-s~edf~~eV~~a~~~~~VVVhf-~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G  205 (228)
                      .+.+| +.+++...+...   ..+||-| .+.|..+.+.+.++|..+.+++|......+.+..|++.. |||++||.+
T Consensus        10 ~~~~l~s~~~~~~~l~~~---~v~vVgff~~~~~~~~~~f~~~A~~l~~~~F~~t~~~~v~~~~~v~~-p~i~lfk~~   83 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFIAAT---EVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLTHYNITG-NTICLFRLV   83 (227)
T ss_dssp             CCEECCSHHHHHHHHHTS---SEEEEEECSCSCSTHHHHHHHHTTTCTTSEEEEECCHHHHHHTTCCS-SEEEEEETT
T ss_pred             CCeeeCCHHHHHHHHhcC---CeEEEEEecCCCchhHHHHHHHHHhCCCceEEEECCHHHHHHcCCCC-CeEEEEEec
Confidence            57788 557776656533   3455544 778999999999999999999999876555667899987 999999985

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=96.94  E-value=0.0018  Score=50.52  Aligned_cols=65  Identities=14%  Similarity=0.135  Sum_probs=50.9

Q ss_pred             ceEEEEe-----ccchHHHHHHHHHHHHhCCCc-EEEEEeCCC------------------------CCCCCCCCCCc--
Q psy14385        150 IWVVLHF-----IPLCSLINNHLSELAAKFPTT-KFIKSISTT------------------------CIPNYPDKNLP--  197 (228)
Q Consensus       150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~-KFvkI~ad~------------------------~~~~y~v~~LP--  197 (228)
                      .+|||+|     |++|+...+.|.++.++|.+- .|+-|..+.                        ....|++...|  
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~  115 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS  115 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence            3788886     999999999999999988521 777776652                        11357888888  


Q ss_pred             -----EEEEEECCEEEeEEeCcc
Q psy14385        198 -----TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 -----TllvYk~G~~v~~lvG~~  215 (228)
                           |++| ++|.++..+.|..
T Consensus       116 g~~~~~~li-~~G~i~~~~~g~~  137 (159)
T 2a4v_A          116 GSIRSHFIF-VDGKLKFKRVKIS  137 (159)
T ss_dssp             CBCCEEEEE-ETTEEEEEEESCC
T ss_pred             CccceEEEE-cCCEEEEEEccCC
Confidence                 7888 9999999999864

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=96.93  E-value=0.0012  Score=54.83  Aligned_cols=37  Identities=8%  Similarity=-0.020  Sum_probs=32.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad  185 (228)
                      +++|||+|    |++|+...+.|.+|+++|.  ++.|+.|+.+
T Consensus        47 Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           47 GKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            46888888    9999999999999999996  4889888764

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=96.88  E-value=0.00037  Score=52.47  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=41.9

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC----------CCCCCCCCCcEEEEEECCEEEeEE
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC----------IPNYPDKNLPTLFIYFEGKMQSQM  211 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~----------~~~y~v~~LPTllvYk~G~~v~~l  211 (228)
                      .|+++.   |+.|+.+.+.|..++..++.  |..++++..          ...|+++++|+++  .+|+.++.+
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~igg~   89 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIF--FGKTSIGGY   89 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE--ETTEEEESH
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEE--ECCEEEeCc
Confidence            455555   99999999999987766544  666666543          2568999999974  499887654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=96.87  E-value=0.0017  Score=54.19  Aligned_cols=31  Identities=13%  Similarity=0.214  Sum_probs=24.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIK  181 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvk  181 (228)
                      +.++|+.|    ||+|+.+.+.|.+++.+  +++|+-
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~  120 (216)
T 1eej_A           86 EKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRY  120 (216)
T ss_dssp             CCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEE
Confidence            35667766    99999999999999874  555543

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=96.79  E-value=0.0019  Score=43.77  Aligned_cols=49  Identities=10%  Similarity=0.067  Sum_probs=37.9

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CC---CCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IP---NYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~---~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |+.|+.+.+.|+++     ++.|..++.+..   .+   .+++..+|++++  +|+.   +.|+.
T Consensus        11 C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~~   65 (75)
T 1r7h_A           11 CVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFR   65 (75)
T ss_dssp             CHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCC
T ss_pred             ChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCCC
Confidence            99999999999876     477778887763   22   789999999984  8875   45653

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=96.73  E-value=0.0013  Score=57.09  Aligned_cols=70  Identities=19%  Similarity=0.300  Sum_probs=54.7

Q ss_pred             CceEEE-Ee----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------------CCCC
Q psy14385        149 GIWVVL-HF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------------IPNY  191 (228)
Q Consensus       149 ~~~VVV-hf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------------~~~y  191 (228)
                      +.|||+ +|    |+.|....+.|.+++.+|.  +++|+.|..+..                              +..|
T Consensus        33 GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~y  112 (249)
T 3a2v_A           33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRL  112 (249)
T ss_dssp             TCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHH
T ss_pred             CCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHh
Confidence            357665 44    9999999999999999985  689998887530                              1235


Q ss_pred             CCC-------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        192 PDK-------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       192 ~v~-------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      ++.       .+|+++++ ++|.++..++|....|
T Consensus       113 gv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~g  147 (249)
T 3a2v_A          113 GLLHAESATHTVRGVFIVDARGVIRTMLYYPMELG  147 (249)
T ss_dssp             TCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBC
T ss_pred             CCccccCCCcccceEEEECCCCeEEEEEecCCccc
Confidence            565       89987777 6999999999987666

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=96.69  E-value=0.0019  Score=44.70  Aligned_cols=45  Identities=9%  Similarity=-0.023  Sum_probs=35.3

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECCEEE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G~~v  208 (228)
                      |++|+.+.+.|+++     ++.|..+|.+...      ..|++..+||+  |.+|+.+
T Consensus        11 C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~~   61 (81)
T 1h75_A           11 CVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLSW   61 (81)
T ss_dssp             CHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEEE
T ss_pred             ChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEEE
Confidence            99999999999874     4778888887531      24899999998  4588753

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=96.67  E-value=0.0021  Score=49.93  Aligned_cols=66  Identities=17%  Similarity=0.272  Sum_probs=51.9

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------CCCCCCCC--
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------IPNYPDKN--  195 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------~~~y~v~~--  195 (228)
                      +++|||+|     |++|....+.|.++.++|.  ++.|+-|..+..                        ...|++..  
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  114 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK  114 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence            35788877     9999999999999999985  588988887730                        13466665  


Q ss_pred             ----------CcEEEEE-ECCEEEeEEeCc
Q psy14385        196 ----------LPTLFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       196 ----------LPTllvY-k~G~~v~~lvG~  214 (228)
                                +|+++++ ++|.++..+.|.
T Consensus       115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~  144 (163)
T 3gkn_A          115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKV  144 (163)
T ss_dssp             EETTEEEEEECCEEEEECTTSCEEEEECSC
T ss_pred             ccccccccCcceEEEEECCCCeEEEEEcCC
Confidence                      8999998 689999888544

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.60  E-value=0.0043  Score=47.90  Aligned_cols=53  Identities=11%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC----------CCCCCCCCCcEEEEEECCEEEeE
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC----------IPNYPDKNLPTLFIYFEGKMQSQ  210 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~----------~~~y~v~~LPTllvYk~G~~v~~  210 (228)
                      .|+|+.   |++|+.+.+.|..+.     +.|..++++..          ...+++..+|+|+  .+|+.+..
T Consensus        28 ~vvvf~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i~G~~igg   93 (130)
T 2cq9_A           28 CVVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNGTFIGG   93 (130)
T ss_dssp             SEEEEECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--ETTEEEEE
T ss_pred             cEEEEEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--ECCEEEcC
Confidence            366644   999999999999875     34555555532          2468999999984  59988765

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=96.56  E-value=0.0048  Score=47.89  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=56.2

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEE-EeccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCE-E
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVL-HFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK-M  207 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVV-hf~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~-~  207 (228)
                      +..| +.+++...+...   ..+|| +|-..|.-..+.|..+|..+++++|...+..+....|++. .|++.+||.+. .
T Consensus        23 ~~~i~s~~e~e~fi~~~---~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~-~~~vvlfkkfde~   98 (124)
T 2l4c_A           23 PTWLTDVPAAMEFIAAT---EVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLTHYNIT-GNTICLFRLVDNE   98 (124)
T ss_dssp             CEECCSHHHHHHHHHTS---SEEEEEECSCTTSTHHHHHHHHHHHCTTSEEEEECCHHHHHHTTCC-SSCEEEEETTTTE
T ss_pred             ceEcCCHHHHHHHHhcC---CCEEEEEECCCCChhHHHHHHHHHhCCCceEEEEChHHHHHHcCCC-CCeEEEEEcCCCC
Confidence            4567 567777666533   24555 4433344458899999999999999988777777888888 89999999975 3


Q ss_pred             EeEEeC
Q psy14385        208 QSQMVG  213 (228)
Q Consensus       208 v~~lvG  213 (228)
                      ...+.|
T Consensus        99 ~~~~~g  104 (124)
T 2l4c_A           99 QLNLED  104 (124)
T ss_dssp             EEEECH
T ss_pred             ceeecC
Confidence            333443

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.39  E-value=0.0033  Score=46.80  Aligned_cols=67  Identities=10%  Similarity=0.127  Sum_probs=43.7

Q ss_pred             hhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCC-----C----CCCCCCCCCCcEEEEEE
Q psy14385        136 GDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSIST-----T----CIPNYPDKNLPTLFIYF  203 (228)
Q Consensus       136 ~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad-----~----~~~~y~v~~LPTllvYk  203 (228)
                      ..++++.+.+..   .|+++.   ||.|+.+.+.|.++.-.|   .++.|+..     .    ....++...+|++  |.
T Consensus         8 ~~~~~~~~i~~~---~v~vy~~~~Cp~C~~~~~~L~~~~i~~---~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi   79 (113)
T 3rhb_A            8 MEESIRKTVTEN---TVVIYSKTWCSYCTEVKTLFKRLGVQP---LVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FV   79 (113)
T ss_dssp             HHHHHHHHHHHS---SEEEEECTTCHHHHHHHHHHHHTTCCC---EEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred             HHHHHHHHHhcC---CEEEEECCCChhHHHHHHHHHHcCCCC---eEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EE
Confidence            456666665553   366655   999999999998875433   34444432     0    1133588999998  67


Q ss_pred             CCEEEeE
Q psy14385        204 EGKMQSQ  210 (228)
Q Consensus       204 ~G~~v~~  210 (228)
                      +|+.++.
T Consensus        80 ~g~~igG   86 (113)
T 3rhb_A           80 CGKHIGG   86 (113)
T ss_dssp             TTEEEES
T ss_pred             CCEEEcC
Confidence            9988764

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=96.36  E-value=0.017  Score=47.38  Aligned_cols=67  Identities=13%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC------CCCC--------------------CCCC---
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTT------CIPN--------------------YPDK---  194 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~------~~~~--------------------y~v~---  194 (228)
                      +++|||.|     |+.|....+.|.++.++|.++.|+-|..+.      ....                    |++.   
T Consensus        78 Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~  157 (200)
T 3zrd_A           78 GKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITE  157 (200)
T ss_dssp             TSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEECS
T ss_pred             CCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCceeec
Confidence            46788888     999999999999999999779999888764      1122                    2222   


Q ss_pred             ------CCcEEEEE-ECCEEEeEEeCcc
Q psy14385        195 ------NLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       195 ------~LPTllvY-k~G~~v~~lvG~~  215 (228)
                            ..|+++++ ++|+++...+|..
T Consensus       158 ~~~~g~~~p~~~lID~~G~I~~~~~~~~  185 (200)
T 3zrd_A          158 GPLAGLTARAVVVLDGQDNVIYSELVNE  185 (200)
T ss_dssp             STTTTSBCCEEEEECTTSBEEEEEECSB
T ss_pred             ccCCCccccEEEEECCCCeEEEEEecCC
Confidence                  25998888 6899999887754

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=96.36  E-value=0.0034  Score=47.71  Aligned_cols=55  Identities=18%  Similarity=0.339  Sum_probs=41.0

Q ss_pred             eEEEEe---ccchHHH-HHHHHHHHHhCCCcEEEEEeCCCC----------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        151 WVVLHF---IPLCSLI-NNHLSELAAKFPTTKFIKSISTTC----------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       151 ~VVVhf---~~~C~~l-~~~L~~LA~kyp~~KFvkI~ad~~----------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      .|+++.   |+.|+.+ .+.|..+..  +.+.|..++++..          ...++.+.+|++  |.+|+.++
T Consensus        26 ~Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ig   94 (118)
T 3c1r_A           26 EIFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YINGKHIG   94 (118)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEE
T ss_pred             cEEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECCEEEE
Confidence            366655   9999999 888877652  3477888887653          245889999987  77998765

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=96.35  E-value=0.0069  Score=48.54  Aligned_cols=72  Identities=15%  Similarity=-0.057  Sum_probs=52.2

Q ss_pred             ceEEEEe-----ccchHH-HHHHHHHHHHhC--CCc-EEEEEeCCCC-----------C---------------CCCCCC
Q psy14385        150 IWVVLHF-----IPLCSL-INNHLSELAAKF--PTT-KFIKSISTTC-----------I---------------PNYPDK  194 (228)
Q Consensus       150 ~~VVVhf-----~~~C~~-l~~~L~~LA~ky--p~~-KFvkI~ad~~-----------~---------------~~y~v~  194 (228)
                      ++|||.|     |++|+. -.+.|.+++++|  .++ .++-|..+..           .               ..|++.
T Consensus        32 k~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~  111 (167)
T 2wfc_A           32 KKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDME  111 (167)
T ss_dssp             SEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred             CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence            5777776     999999 888899988888  468 8988877641           1               124443


Q ss_pred             C-----------CcEEEEEECCEEEeEEeCccccCCCC
Q psy14385        195 N-----------LPTLFIYFEGKMQSQMVGPDEFRTNL  221 (228)
Q Consensus       195 ~-----------LPTllvYk~G~~v~~lvG~~~~G~~~  221 (228)
                      .           .|+.+++++|+++...+|....+.+.
T Consensus       112 ~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~~~~~~~~  149 (167)
T 2wfc_A          112 LDLSAVLGNVRSKRYSLVIEDGVVTKVNVEPDGKGLTC  149 (167)
T ss_dssp             ECCHHHHSSCEECCEEEEEETTEEEEEEECTTSSSSST
T ss_pred             cccccccCcccceEEEEEEeCCEEEEEEecCCCCccee
Confidence            2           38766669999999999876554333

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.33  E-value=0.0049  Score=48.96  Aligned_cols=63  Identities=13%  Similarity=0.274  Sum_probs=42.2

Q ss_pred             hHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC----------CCCCCCCCCcEEEEEEC
Q psy14385        138 TYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC----------IPNYPDKNLPTLFIYFE  204 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~----------~~~y~v~~LPTllvYk~  204 (228)
                      +.+..+.+..   .|+|+.   |++|+.+.+.|..+.-     .|..++++..          ...+++..+|+|+  .+
T Consensus        40 ~~~~~~i~~~---~Vvvf~~~~Cp~C~~~k~~L~~~~i-----~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~  109 (146)
T 2ht9_A           40 NQIQETISDN---CVVIFSKTSCSYCTMAKKLFHDMNV-----NYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VN  109 (146)
T ss_dssp             HHHHHHHHHC---SEEEEECTTCHHHHHHHHHHHHHTC-----CCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ET
T ss_pred             HHHHHHhcCC---CEEEEECCCChhHHHHHHHHHHcCC-----CeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--EC
Confidence            4444444332   466655   9999999999998853     3444554432          2468999999984  59


Q ss_pred             CEEEeE
Q psy14385        205 GKMQSQ  210 (228)
Q Consensus       205 G~~v~~  210 (228)
                      |+.++.
T Consensus       110 G~~igG  115 (146)
T 2ht9_A          110 GTFIGG  115 (146)
T ss_dssp             TEEEES
T ss_pred             CEEEeC
Confidence            987754

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.30  E-value=0.0086  Score=50.09  Aligned_cols=70  Identities=16%  Similarity=0.146  Sum_probs=52.4

Q ss_pred             CceEEEEe-----ccchH-HHHHHHHHHHHhC--CCc-EEEEEeCCCC-----------C--------------CCCCCC
Q psy14385        149 GIWVVLHF-----IPLCS-LINNHLSELAAKF--PTT-KFIKSISTTC-----------I--------------PNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~-~l~~~L~~LA~ky--p~~-KFvkI~ad~~-----------~--------------~~y~v~  194 (228)
                      +++|||+|     |++|+ .-.+.|.+++++|  .++ .|+-|..+..           .              ..|++.
T Consensus        33 gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  112 (241)
T 1nm3_A           33 NKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGML  112 (241)
T ss_dssp             TSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCE
T ss_pred             CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCce
Confidence            35788877     99999 8889999999888  468 8988887640           1              124443


Q ss_pred             -----------CCcEEEEEECCEEEeEEeCccccC
Q psy14385        195 -----------NLPTLFIYFEGKMQSQMVGPDEFR  218 (228)
Q Consensus       195 -----------~LPTllvYk~G~~v~~lvG~~~~G  218 (228)
                                 .+|+.+++++|.++...+|....|
T Consensus       113 ~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~  147 (241)
T 1nm3_A          113 VGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPG  147 (241)
T ss_dssp             EECTTTTCCEEECCEEEEEETTEEEEEEECCSCSS
T ss_pred             eecccccCcccceeEEEEEECCEEEEEEEeccCCC
Confidence                       347666669999999999986654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.21  E-value=0.0084  Score=50.90  Aligned_cols=65  Identities=14%  Similarity=0.237  Sum_probs=46.5

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC----------------------------------------
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST----------------------------------------  185 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad----------------------------------------  185 (228)
                      ..+|+.|    ||.|+.+.+.+..+... .+++|..+...                                        
T Consensus        98 k~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~~  176 (241)
T 1v58_A           98 PVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPAN  176 (241)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSS
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcccc
Confidence            3455555    99999999999998876 46777654331                                        


Q ss_pred             ---CC----------CCCCCCCCCcEEEEEE-CCEEEeEEeCccc
Q psy14385        186 ---TC----------IPNYPDKNLPTLFIYF-EGKMQSQMVGPDE  216 (228)
Q Consensus       186 ---~~----------~~~y~v~~LPTllvYk-~G~~v~~lvG~~~  216 (228)
                         .|          ...|++.++||+++.. +|.. ..+.|+..
T Consensus       177 ~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~  220 (241)
T 1v58_A          177 VSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPD  220 (241)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCC
Confidence               01          2467999999999987 5865 56788653

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=96.21  E-value=0.0068  Score=44.70  Aligned_cols=47  Identities=13%  Similarity=0.073  Sum_probs=36.5

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC-------CCCCCCCCcEEEEEECCEEEeE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI-------PNYPDKNLPTLFIYFEGKMQSQ  210 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~-------~~y~v~~LPTllvYk~G~~v~~  210 (228)
                      |+.|+.+.+.|..+.     +.|..+|.+...       ..++...+|++  |.+|+.++.
T Consensus        32 C~~C~~~~~~L~~~~-----i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i~g~~igg   85 (105)
T 2yan_A           32 CGFSKQILEILNSTG-----VEYETFDILEDEEVRQGLKAYSNWPTYPQL--YVKGELVGG   85 (105)
T ss_dssp             TTHHHHHHHHHHHHT-----CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EETTEEEEC
T ss_pred             CccHHHHHHHHHHCC-----CCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EECCEEEeC
Confidence            899999999998874     667788877531       33688999998  569987653

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=96.06  E-value=0.036  Score=49.66  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=59.6

Q ss_pred             ccCCCceEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCC---cEEEEEeCCCCCC-------CC
Q psy14385        125 KSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPT---TKFIKSISTTCIP-------NY  191 (228)
Q Consensus       125 ~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~---~KFvkI~ad~~~~-------~y  191 (228)
                      ...+..|.+++.+++.........+..+++++   ++.|..+.+.|..+|++|.+   +.|+.++++....       .|
T Consensus       224 ~~~~p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~f  303 (367)
T 3us3_A          224 EHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTF  303 (367)
T ss_dssp             HTCSCSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHH
T ss_pred             HcCccceeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhc
Confidence            34567788888888876665322223444444   56688899999999999974   9999999987542       26


Q ss_pred             CCC-CCcEEEEEECCE
Q psy14385        192 PDK-NLPTLFIYFEGK  206 (228)
Q Consensus       192 ~v~-~LPTllvYk~G~  206 (228)
                      ++. .+|+++++....
T Consensus       304 gl~~~~P~~~i~~~~~  319 (367)
T 3us3_A          304 DIDLSAPQIGVVNVTD  319 (367)
T ss_dssp             TCCTTSCEEEEEETTT
T ss_pred             CCCCCCCeEEEEeccc
Confidence            665 899999998543

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=95.82  E-value=0.012  Score=49.49  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=52.4

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC---------C----------------------CC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC---------I----------------------PN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~---------~----------------------~~  190 (228)
                      +++|||+|     |++|+...+.|.++.++|  .++.|+-|..+..         .                      ..
T Consensus        56 Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~  135 (221)
T 2c0d_A           56 QKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKN  135 (221)
T ss_dssp             TCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHH
Confidence            46888888     999999999999999998  5788888876640         0                      12


Q ss_pred             CCC-----CCCcEEEEE-ECCEEEeEEeCcc
Q psy14385        191 YPD-----KNLPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       191 y~v-----~~LPTllvY-k~G~~v~~lvG~~  215 (228)
                      |++     ..+|+++++ ++|.++...+|..
T Consensus       136 ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~  166 (221)
T 2c0d_A          136 YNVLYDNSFALRGLFIIDKNGCVRHQTVNDL  166 (221)
T ss_dssp             TTCEETTTEECEEEEEECTTSBEEEEEEECT
T ss_pred             cCCcccCCCccceEEEECCCCeEEEEEecCC
Confidence            445     257999888 5899999988854

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=95.81  E-value=0.0038  Score=51.92  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEE
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFI  180 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFv  180 (228)
                      ..+|+.|    ||+|+.+.+.|..++..  +++|.
T Consensus        87 k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~  119 (211)
T 1t3b_A           87 KHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVR  119 (211)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEE
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEE
Confidence            4566666    99999999999998774  45554

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=95.74  E-value=0.011  Score=49.96  Aligned_cols=74  Identities=9%  Similarity=0.155  Sum_probs=55.7

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~~y~v~~LPTllvYk~G  205 (228)
                      .|.+|+..+.++.+.+.. ..+||.+|-..|......+..+|..+ .+++|..+........|++.. |++++|+.+
T Consensus         7 ~v~~l~s~~~~~~~l~~~-~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~~~~~v~~~~~~~~-p~i~~fk~~   81 (252)
T 2h8l_A            7 ASVPLRTEEEFKKFISDK-DASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNG-EGIILFRPS   81 (252)
T ss_dssp             CEEECCSHHHHHHHHTSS-SCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEECCHHHHHHHCSSS-EEEEEECCG
T ss_pred             CceeecCHHHHHHHhhcC-CeEEEEEECCCCChHHHHHHHHHHhcccCcEEEEEChHHHHHHhCCCC-CcEEEEcch
Confidence            377886555555544443 35666677556888999999999999 889999886655667888886 999999964

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=95.73  E-value=0.024  Score=50.09  Aligned_cols=73  Identities=18%  Similarity=0.073  Sum_probs=55.2

Q ss_pred             ceEEe-ChhhHHHHHH-hcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385        130 RVLEI-NGDTYVQEVN-NAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       130 ~V~eI-s~edf~~eV~-~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~~y~v~~LPTllvYk~G  205 (228)
                      .+.+| +.+++...+. +.  +.+||.+|.+.|....+.+..+|..+ .+++|..+........|++. .|++++|+.+
T Consensus       124 ~~~~l~~~~~~~~~~~~~~--~~~vv~ff~~~~~~~~~~~~~~A~~~~~~~~f~~~~~~~~~~~~~v~-~p~i~~~~~~  199 (350)
T 1sji_A          124 PVEIINSKLEVQAFERIED--QIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLK-MNEVDFYEPF  199 (350)
T ss_dssp             SEEECCSHHHHHHHHHCCS--SCEEEEECSCTTSHHHHHHHHHHHHTTTTSEEEEECCHHHHHHHTCC-TTCEEEECTT
T ss_pred             cceeccchHHHHHHhccCC--CcEEEEEECCCCcHHHHHHHHHHHhhccCcEEEEECCHHHHHHcCCC-CCcEEEEeCC
Confidence            47788 4566666554 33  24555555556888889999999999 78999988766566788888 9999999974

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=95.73  E-value=0.017  Score=39.66  Aligned_cols=46  Identities=17%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+.|+.+...|.++     ++.|..++.+..       ...++...+|+++  .+|+.+.
T Consensus        11 C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i~   63 (82)
T 1fov_A           11 CPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG   63 (82)
T ss_dssp             CHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE
T ss_pred             ChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence            99999999999876     356666676642       2357899999984  5998754

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=95.72  E-value=0.0078  Score=42.60  Aligned_cols=46  Identities=13%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCC--C---CCCCC-CCCCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSIST--T---CIPNY-PDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad--~---~~~~y-~v~~LPTllvYk~G~~v~  209 (228)
                      |+.|+.+.+.|+++.     +.|..++.+  .   ....+ +...+|+++  .+|+.+.
T Consensus        16 C~~C~~~~~~L~~~~-----i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i~   67 (89)
T 2klx_A           16 CPYCKRARDLLDKKG-----VKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHVG   67 (89)
T ss_dssp             CTTTHHHHHHHHHHT-----CCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEECC
T ss_pred             ChhHHHHHHHHHHcC-----CCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEEe
Confidence            999999999998864     567777776  2   23557 899999984  4998654

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=95.65  E-value=0.0038  Score=51.84  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=32.4

Q ss_pred             ceEEEEe----ccchHHHHHHH---HHHHHhCC-CcEEEEEeCCC
Q psy14385        150 IWVVLHF----IPLCSLINNHL---SELAAKFP-TTKFIKSISTT  186 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L---~~LA~kyp-~~KFvkI~ad~  186 (228)
                      .++||.|    |++|+.+.+.|   ++|+++|| +++|.+++++.
T Consensus       114 ~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~  158 (197)
T 1un2_A          114 APQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF  158 (197)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred             CCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCc
Confidence            3567776    99999999999   99999998 59999999864

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=95.59  E-value=0.028  Score=46.55  Aligned_cols=70  Identities=17%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC-----------------C--------------CC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC-----------------I--------------PN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~-----------------~--------------~~  190 (228)
                      +++|||+|     |++|+...+.|.++.++|  .++.|+-|..+..                 .              ..
T Consensus        48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~  127 (211)
T 2pn8_A           48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD  127 (211)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHHH
Confidence            46888888     999999999999999998  4688988876631                 0              12


Q ss_pred             CCCC------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        191 YPDK------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       191 y~v~------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      |++.      .+|+++++ ++|+++...+|....+
T Consensus       128 ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~  162 (211)
T 2pn8_A          128 YGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVG  162 (211)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBC
T ss_pred             cCCcccCCCcccceEEEECCCCEEEEEEecCCCCC
Confidence            3442      58999988 5899999998865443

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=95.52  E-value=0.041  Score=43.14  Aligned_cols=66  Identities=14%  Similarity=0.032  Sum_probs=50.3

Q ss_pred             CceEEEEe-----ccchH-HHHHHHHHHHHhC--CCcE-EEEEeCCCC-----------C---------------CCCCC
Q psy14385        149 GIWVVLHF-----IPLCS-LINNHLSELAAKF--PTTK-FIKSISTTC-----------I---------------PNYPD  193 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~-~l~~~L~~LA~ky--p~~K-FvkI~ad~~-----------~---------------~~y~v  193 (228)
                      +++|||+|     |++|. .-.+.|.+++++|  .++. ++-|..+..           .               ..|++
T Consensus        35 gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  114 (162)
T 1tp9_A           35 GKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGL  114 (162)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTC
T ss_pred             CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCc
Confidence            35788887     99999 7888899998887  3678 888776530           1               12444


Q ss_pred             C-----------CCcEEEEEECCEEEeEEeCc
Q psy14385        194 K-----------NLPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       194 ~-----------~LPTllvYk~G~~v~~lvG~  214 (228)
                      .           .+|+.+++.+|+++...+|.
T Consensus       115 ~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~  146 (162)
T 1tp9_A          115 ELDLQEKGLGTRSRRFALLVDDLKVKAANIEG  146 (162)
T ss_dssp             EEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred             ccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence            3           27998888999999999987

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=95.42  E-value=0.0025  Score=49.49  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=43.6

Q ss_pred             hhHHHHHHhcCCCceEEEEe---ccchHHH-HHHHHHHHHhCCCcEEEEEeCCC--------CCCCCCCCCCcEEEEEEC
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF---IPLCSLI-NNHLSELAAKFPTTKFIKSISTT--------CIPNYPDKNLPTLFIYFE  204 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf---~~~C~~l-~~~L~~LA~kyp~~KFvkI~ad~--------~~~~y~v~~LPTllvYk~  204 (228)
                      .+.++.+.+..   .|+|+.   ||.|+.+ .+.|..+...+....++.|+.+.        ....++...+|++  |.+
T Consensus        27 ~~~v~~~i~~~---~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--fi~  101 (129)
T 3ctg_A           27 VAHVKDLIGQK---EVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--YIN  101 (129)
T ss_dssp             HHHHHHHHHHS---SEEEEECTTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred             HHHHHHHHcCC---CEEEEECCCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--EEC
Confidence            44454454443   366666   9999999 98888776432334445554432        1345788999995  779


Q ss_pred             CEEEe
Q psy14385        205 GKMQS  209 (228)
Q Consensus       205 G~~v~  209 (228)
                      |+.++
T Consensus       102 g~~ig  106 (129)
T 3ctg_A          102 GKHIG  106 (129)
T ss_dssp             TEEEE
T ss_pred             CEEEc
Confidence            98765

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=95.38  E-value=0.024  Score=48.15  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=54.1

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------------CCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------------IPN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------------~~~  190 (228)
                      +++|||.|     |+.|....+.|.+++++|.  ++.|+-|..+..                               ...
T Consensus        77 Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~  156 (240)
T 3qpm_A           77 GKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKD  156 (240)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred             CCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHH
Confidence            46888888     9999999999999999994  588888877630                               022


Q ss_pred             CCCC------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        191 YPDK------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       191 y~v~------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      |++.      .+|+++++ ++|.++...+|....+
T Consensus       157 ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~  191 (240)
T 3qpm_A          157 YGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVG  191 (240)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBC
T ss_pred             hCCccccCCCccceEEEEcCCCeEEEEEecCCCCC
Confidence            4554      57988888 6899999988765544

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=95.37  E-value=0.023  Score=45.85  Aligned_cols=68  Identities=13%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             ceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC--------------C--------------CCCCCC
Q psy14385        150 IWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC--------------I--------------PNYPDK  194 (228)
Q Consensus       150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~--------------~--------------~~y~v~  194 (228)
                      ++|||+|     |++|+...+.|.++.++|.  ++.|+-|..+..              .              ..|++.
T Consensus        31 k~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~  110 (186)
T 1n8j_A           31 RWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNM  110 (186)
T ss_dssp             SEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCE
T ss_pred             CeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCCc
Confidence            5888887     9999999999999999885  688888876530              0              124444


Q ss_pred             ------CCcEEEEEE-CCEEEeEEeCcccc
Q psy14385        195 ------NLPTLFIYF-EGKMQSQMVGPDEF  217 (228)
Q Consensus       195 ------~LPTllvYk-~G~~v~~lvG~~~~  217 (228)
                            .+|+.+++. +|.++...+|....
T Consensus       111 ~~~~g~~~p~~~lID~~G~i~~~~~~~~~~  140 (186)
T 1n8j_A          111 REDEGLADRATFVVDPQGIIQAIEVTAEGI  140 (186)
T ss_dssp             ETTTTEECEEEEEECTTSBEEEEEEECTTB
T ss_pred             cCCCCceeeEEEEECCCCeEEEEEecCCCC
Confidence                  369999985 89999999886543

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=95.33  E-value=0.029  Score=44.86  Aligned_cols=66  Identities=14%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------CCCCCCCC--
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------IPNYPDKN--  195 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------~~~y~v~~--  195 (228)
                      +++|||.|     |+.|..-.+.|.++.++|.  ++.++-|..+..                        ...|++..  
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~  130 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK  130 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence            45788877     9999999999999999985  478888877630                        12355532  


Q ss_pred             ----------CcEEEEE-ECCEEEeEEeCc
Q psy14385        196 ----------LPTLFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       196 ----------LPTllvY-k~G~~v~~lvG~  214 (228)
                                .|+.+++ ++|+++..+.|.
T Consensus       131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~  160 (179)
T 3ixr_A          131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQV  160 (179)
T ss_dssp             CCC--CEEEECCEEEEECTTSBEEEEECSC
T ss_pred             cccCcccCCcceEEEEECCCCEEEEEEcCC
Confidence                      6877777 689999887443

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=95.18  E-value=0.028  Score=45.22  Aligned_cols=37  Identities=24%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad  185 (228)
                      +.++|+.|    ||.|+.+.+.|.+|+++|+ .+.|..++..
T Consensus        25 ~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           25 GKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            35666666    9999999999999999998 5899988875

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=95.09  E-value=0.023  Score=44.52  Aligned_cols=66  Identities=12%  Similarity=0.163  Sum_probs=50.3

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-----------C---------------CCCCCCC--
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC-----------I---------------PNYPDKN--  195 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-----------~---------------~~y~v~~--  195 (228)
                      +++|||+|     |+.|..-.+.|.++.++ .++.|+-|..+..           .               ..|++..  
T Consensus        46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~  124 (166)
T 3p7x_A           46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEE  124 (166)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETT
T ss_pred             CCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcccc
Confidence            35777777     99999999999999888 7899988887641           1               1134443  


Q ss_pred             ----CcEEEEE-ECCEEEeEEeCcc
Q psy14385        196 ----LPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       196 ----LPTllvY-k~G~~v~~lvG~~  215 (228)
                          .|+.+++ ++|+++...++..
T Consensus       125 ~g~~~p~~~liD~~G~i~~~~~~~~  149 (166)
T 3p7x_A          125 LRLLARAVFVLDADNKVVYKEIVSE  149 (166)
T ss_dssp             TTEECCEEEEECTTCBEEEEEECSB
T ss_pred             CCceeeEEEEECCCCeEEEEEEcCC
Confidence                7998888 6899999887764

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=95.09  E-value=0.036  Score=40.80  Aligned_cols=53  Identities=11%  Similarity=0.185  Sum_probs=38.4

Q ss_pred             ceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCC-CCCCCcEEEEEECCEEEe
Q psy14385        150 IWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNY-PDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       150 ~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y-~v~~LPTllvYk~G~~v~  209 (228)
                      ..|+|+-   |+.|+.+.+.|+++.     +.|..++++..       ...+ +...+|++  |.+|+.++
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~~-----i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig   79 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRKG-----VEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG   79 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHCC-----CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence            3466655   999999999999874     45666676652       1223 88999987  66998765

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=95.04  E-value=0.029  Score=42.02  Aligned_cols=53  Identities=15%  Similarity=0.154  Sum_probs=37.5

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC----------CCCCCCCCCcEEEEEECCEEEeE
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC----------IPNYPDKNLPTLFIYFEGKMQSQ  210 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~----------~~~y~v~~LPTllvYk~G~~v~~  210 (228)
                      .|+|+-   ||.|+.+.+.|..+.     +.|..++.+..          ...++...+|++++  +|+.++.
T Consensus        18 ~v~vy~~~~Cp~C~~ak~~L~~~~-----i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~g~~igG   83 (114)
T 3h8q_A           18 RVVIFSKSYCPHSTRVKELFSSLG-----VECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--NKVHVGG   83 (114)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--TTEEEES
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--CCEEEeC
Confidence            366655   999999999998863     45556666531          23457789999865  9987763

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=95.03  E-value=0.021  Score=48.42  Aligned_cols=74  Identities=12%  Similarity=-0.003  Sum_probs=55.3

Q ss_pred             ceEEeC-hhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385        130 RVLEIN-GDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       130 ~V~eIs-~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~~y~v~~LPTllvYk~G  205 (228)
                      .|.+|+ .+++..-+.... ..+||-+|-+.|....+.|..+|..+ .+++|........+..|++.. |+|++||.+
T Consensus         7 ~v~~l~s~~~~~~~~~~~~-~v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t~~~~v~~~~~v~~-p~ivlfk~~   82 (250)
T 3ec3_A            7 PSKEILTLKQVQEFLKDGD-DVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFLKVSL-GKLVLMQPE   82 (250)
T ss_dssp             SSEECCCHHHHHHHHHHCS-SCEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEECCHHHHHHHTCCS-SEEEEECCG
T ss_pred             CceecCCHHHHHHHHhcCC-CeEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEECcHHHHHHcCCCC-CeEEEEecc
Confidence            367884 466655555412 35556666677999999999999997 889999886666667788877 999999953

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=94.94  E-value=0.068  Score=41.79  Aligned_cols=67  Identities=12%  Similarity=0.084  Sum_probs=50.5

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CC-----C---------------CCCCC--
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IP-----N---------------YPDKN--  195 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~-----~---------------y~v~~--  195 (228)
                      +++|||+|     |++|..-.+.|.++.++|.++.|+-|..+..      ..     +               |++..  
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~  122 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQT  122 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECS
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCceecc
Confidence            46888887     9999999999999999997799988877631      11     1               22221  


Q ss_pred             -------CcEEEEE-ECCEEEeEEeCcc
Q psy14385        196 -------LPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       196 -------LPTllvY-k~G~~v~~lvG~~  215 (228)
                             .|+.+++ ++|+++...+|..
T Consensus       123 ~~~~g~~~p~~~liD~~G~i~~~~~~~~  150 (165)
T 1q98_A          123 GPLAGLTSRAVIVLDEQNNVLHSQLVEE  150 (165)
T ss_dssp             STTTTSBCCEEEEECTTSBEEEEEECSB
T ss_pred             cccCCccceeEEEEcCCCEEEEEEeCCC
Confidence                   4888888 5899999988743

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=94.82  E-value=0.0092  Score=46.89  Aligned_cols=70  Identities=23%  Similarity=0.315  Sum_probs=44.8

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------CCCCCCC---
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------IPNYPDK---  194 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------~~~y~v~---  194 (228)
                      +++|||.|     |++|..-.+.|.++..+|.  ++.++-|..+..                        ...|++.   
T Consensus        30 Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~  109 (157)
T 4g2e_A           30 GKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWEF  109 (157)
T ss_dssp             TSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEC
T ss_pred             CCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcccc
Confidence            45788877     9999999999999998884  588888877641                        1224432   


Q ss_pred             --------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        195 --------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       195 --------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                              ..||.++. ++|+++...+|....+
T Consensus       110 ~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~  142 (157)
T 4g2e_A          110 PALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTK  142 (157)
T ss_dssp             TTSTTCEEECEEEEEECTTSBEEEEEEESSTTC
T ss_pred             ccCCCcceeeeeEEEECCCCEEEEEEECCCCCC
Confidence                    35666555 7899999988865544

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=94.78  E-value=0.031  Score=39.50  Aligned_cols=51  Identities=12%  Similarity=0.234  Sum_probs=36.7

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+++.   |+.|+.+.+.|.++     ++.|..++.+..       ...++...+|++  |.+|+.+.
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~   68 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG   68 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence            44444   99999999999875     466777777652       135789999975  56997654

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=94.73  E-value=0.054  Score=44.22  Aligned_cols=67  Identities=13%  Similarity=0.033  Sum_probs=49.0

Q ss_pred             ceEEEE-e----ccchHH-HHHHHHHHHHhC--CCcE-EEEEeCCCC-----------CC---------------CCCCC
Q psy14385        150 IWVVLH-F----IPLCSL-INNHLSELAAKF--PTTK-FIKSISTTC-----------IP---------------NYPDK  194 (228)
Q Consensus       150 ~~VVVh-f----~~~C~~-l~~~L~~LA~ky--p~~K-FvkI~ad~~-----------~~---------------~y~v~  194 (228)
                      ++|||. |    |++|+. -.+.|.+++++|  .++. ++-|+.+..           .+               .|++.
T Consensus        57 k~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~  136 (184)
T 3uma_A           57 KRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGME  136 (184)
T ss_dssp             SEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCE
T ss_pred             CCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCc
Confidence            455554 4    999999 689999999988  3577 888887751           11               24553


Q ss_pred             -----------CCcEEEEEECCEEEeEEeCccc
Q psy14385        195 -----------NLPTLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       195 -----------~LPTllvYk~G~~v~~lvG~~~  216 (228)
                                 ..|+.+|..+|.++...+|...
T Consensus       137 ~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~  169 (184)
T 3uma_A          137 IDLSAGTLGIRSKRYSMLVEDGVVKALNIEESP  169 (184)
T ss_dssp             EEEGGGTCEEEECCEEEEEETTEEEEEEECSST
T ss_pred             eeccccCCcccceeEEEEECCCEEEEEEEeCCC
Confidence                       2466666699999999999764

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=94.70  E-value=0.074  Score=42.97  Aligned_cols=73  Identities=16%  Similarity=0.048  Sum_probs=52.5

Q ss_pred             CceEEEEe-----ccchHH-HHHHHHHHHHhCC--CcEEEE-EeCCCC-----------C---------------CCCCC
Q psy14385        149 GIWVVLHF-----IPLCSL-INNHLSELAAKFP--TTKFIK-SISTTC-----------I---------------PNYPD  193 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~-l~~~L~~LA~kyp--~~KFvk-I~ad~~-----------~---------------~~y~v  193 (228)
                      +++|||.|     |++|+. -.+.|.+++.+|.  ++.++- |..+..           .               ..|++
T Consensus        43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv  122 (173)
T 3mng_A           43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDL  122 (173)
T ss_dssp             TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTC
T ss_pred             CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCC
Confidence            35666655     999995 7788999998884  577775 665530           1               12333


Q ss_pred             C-------------CCcEEEEEECCEEEeEEeCccccCCCC
Q psy14385        194 K-------------NLPTLFIYFEGKMQSQMVGPDEFRTNL  221 (228)
Q Consensus       194 ~-------------~LPTllvYk~G~~v~~lvG~~~~G~~~  221 (228)
                      .             ..|+.+|..+|.++...++....|.+.
T Consensus       123 ~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~  163 (173)
T 3mng_A          123 LLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTC  163 (173)
T ss_dssp             BCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSST
T ss_pred             CcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcch
Confidence            2             459999999999999999998888433

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=94.67  E-value=0.042  Score=44.74  Aligned_cols=37  Identities=27%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad  185 (228)
                      +.++||.|    ||+|+.+.+.|.+++++|++ +.|..++..
T Consensus        24 ~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~   65 (193)
T 3hz8_A           24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVV   65 (193)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence            34566666    99999999999999999985 888888764

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=93.98  E-value=0.012  Score=41.60  Aligned_cols=56  Identities=16%  Similarity=0.164  Sum_probs=36.8

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCC---C-------CCCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSIST---T-------CIPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad---~-------~~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |+++.   |+.|+.+...|+++.-.|   .++.|+..   .       ....++...+|+|++  +|+.   +.|+.
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~gi~~---~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~   82 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREGVDF---EVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYN   82 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHTCCC---EEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCC
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCc---EEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCC
Confidence            44444   999999999999875333   34444421   1       124578899999987  8864   44553

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=93.84  E-value=0.07  Score=41.54  Aligned_cols=67  Identities=16%  Similarity=0.182  Sum_probs=51.8

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-----------CCC---------------CCCC---
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC-----------IPN---------------YPDK---  194 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-----------~~~---------------y~v~---  194 (228)
                      +++|||+|     |++|....+.|.++.++|.++.|+-|..+..           ..+               |++.   
T Consensus        42 gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~  121 (163)
T 1psq_A           42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINE  121 (163)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTT
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcccc
Confidence            46888888     9999999999999999997789988877631           102               2332   


Q ss_pred             -C--CcEEEEE-ECCEEEeEEeCcc
Q psy14385        195 -N--LPTLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       195 -~--LPTllvY-k~G~~v~~lvG~~  215 (228)
                       +  .|+.+++ ++|+++...+|..
T Consensus       122 ~g~~~p~~~liD~~G~i~~~~~g~~  146 (163)
T 1psq_A          122 WHLLARAVFVLDTDNTIRYVEYVDN  146 (163)
T ss_dssp             TCSBCCEEEEECTTCBEEEEEECSB
T ss_pred             CCceEEEEEEEcCCCeEEEEEecCC
Confidence             2  3898888 5899999999864

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=93.79  E-value=0.072  Score=39.44  Aligned_cols=47  Identities=11%  Similarity=0.033  Sum_probs=35.3

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEeE
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQSQ  210 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~~  210 (228)
                      |+.|+.+.+.|..+     ++.|..++.+..       ...++...+|+  +|.+|+.++.
T Consensus        30 Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~--ifi~g~~igG   83 (109)
T 1wik_A           30 CGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQ--LYVRGDLVGG   83 (109)
T ss_dssp             SSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCE--EECSSSEEEC
T ss_pred             CchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCCCCCCE--EEECCEEEcC
Confidence            89999999999875     567888888753       12356789998  4779987653

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=93.79  E-value=0.045  Score=37.89  Aligned_cols=48  Identities=13%  Similarity=0.169  Sum_probs=32.4

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-------CCCCCCC-----CCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTT-------CIPNYPD-----KNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-------~~~~y~v-----~~LPTllvYk~G~~v~  209 (228)
                      |+.|+.+...|.++.-.   ..++.++...       ....++.     ..+|++++  +|+.++
T Consensus        14 Cp~C~~~~~~L~~~~i~---~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~   73 (89)
T 3msz_A           14 CPYCVWAKQWFEENNIA---FDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG   73 (89)
T ss_dssp             CHHHHHHHHHHHHTTCC---CEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE
T ss_pred             ChhHHHHHHHHHHcCCC---ceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe
Confidence            99999999998876533   3455554432       2233444     99999965  998765

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=93.75  E-value=0.057  Score=46.40  Aligned_cols=70  Identities=19%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------C-------------------------CC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------I-------------------------PN  190 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------~-------------------------~~  190 (228)
                      +++|||+|     |+.|..-.+.|.+++++|.  ++.++-|..+..      .                         ..
T Consensus        91 GK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~  170 (254)
T 3tjj_A           91 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD  170 (254)
T ss_dssp             TSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHH
Confidence            46888888     9999999999999999984  588888877631      0                         11


Q ss_pred             CCCC------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        191 YPDK------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       191 y~v~------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      |++.      .+|+++|+ ++|.++..++|....|
T Consensus       171 ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~  205 (254)
T 3tjj_A          171 YGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVG  205 (254)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTCC
T ss_pred             cCCccccCCCccceEEEECCCCeEEEEEecCCCCC
Confidence            2332      46887777 5899999988765554

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=93.49  E-value=0.087  Score=41.25  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-----------C--------------CCCCCC----
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC-----------I--------------PNYPDK----  194 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-----------~--------------~~y~v~----  194 (228)
                      +++|||+|     |+.|+...+.|.++.++|.++.|+-|..+..           .              ..|++.    
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~  126 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEKYGVLIGEG  126 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGGGGGTCBBCSS
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcHHHhCCEeccc
Confidence            46888887     9999999999999999997788888876631           1              112222    


Q ss_pred             -----CCcEEEEEE-CCEEEeEEeCcc
Q psy14385        195 -----NLPTLFIYF-EGKMQSQMVGPD  215 (228)
Q Consensus       195 -----~LPTllvYk-~G~~v~~lvG~~  215 (228)
                           ..|+++++. +|+++...+|..
T Consensus       127 ~~~g~~~p~~~liD~~G~i~~~~~~~~  153 (171)
T 2yzh_A          127 ALKGILARAVFIIDKEGKVAYVQLVPE  153 (171)
T ss_dssp             TTTTSBCCEEEEECTTSBEEEEEECSB
T ss_pred             ccCCceeeEEEEEcCCCeEEEEEeCCC
Confidence                 258888885 899999998754

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=93.41  E-value=0.11  Score=41.50  Aligned_cols=35  Identities=17%  Similarity=0.386  Sum_probs=29.5

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeC
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSIS  184 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~a  184 (228)
                      .++|+.|    ||.|+.+.+.|.+|+++|++ +.|..+..
T Consensus        26 ~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           26 KIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            4566666    99999999999999999985 78877765

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=93.32  E-value=0.041  Score=44.64  Aligned_cols=36  Identities=17%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             eEEEEe----ccchHHHHHHH---HHHHHhCC-CcEEEEEeCCC
Q psy14385        151 WVVLHF----IPLCSLINNHL---SELAAKFP-TTKFIKSISTT  186 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L---~~LA~kyp-~~KFvkI~ad~  186 (228)
                      ++||.|    ||+|+.+.+.+   ..++++|+ +++|+.++..-
T Consensus        16 ~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   59 (189)
T 3l9v_A           16 PAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSL   59 (189)
T ss_dssp             CSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred             CEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence            345555    99999999987   79999998 69999988753

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=93.25  E-value=0.027  Score=45.76  Aligned_cols=34  Identities=21%  Similarity=0.118  Sum_probs=28.8

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST  185 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad  185 (228)
                      ++||.|    ||+|+.+.+.+.+|+++| +++|.+++..
T Consensus        24 ~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~   61 (185)
T 3feu_A           24 APVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHIT   61 (185)
T ss_dssp             CSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECC
T ss_pred             CEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEecc
Confidence            445544    999999999999999999 8899888764

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=92.65  E-value=0.2  Score=39.81  Aligned_cols=67  Identities=13%  Similarity=0.087  Sum_probs=47.2

Q ss_pred             eEEEEe----ccchHHH-HHHHHHHHHhC--CCcE-EEEEeCCCC-----------C-CCC--------------CCCC-
Q psy14385        151 WVVLHF----IPLCSLI-NNHLSELAAKF--PTTK-FIKSISTTC-----------I-PNY--------------PDKN-  195 (228)
Q Consensus       151 ~VVVhf----~~~C~~l-~~~L~~LA~ky--p~~K-FvkI~ad~~-----------~-~~y--------------~v~~-  195 (228)
                      .||++|    |++|+.- .+.|.+++.+|  .++. ++-|+.+..           . .+|              ++.. 
T Consensus        46 vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~  125 (171)
T 2pwj_A           46 VVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTD  125 (171)
T ss_dssp             EEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEE
T ss_pred             EEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccc
Confidence            455566    9999998 89999999888  4678 888877640           1 023              2221 


Q ss_pred             ----------C-cEEEEEECCEEEeEEeCccccC
Q psy14385        196 ----------L-PTLFIYFEGKMQSQMVGPDEFR  218 (228)
Q Consensus       196 ----------L-PTllvYk~G~~v~~lvG~~~~G  218 (228)
                                . +|++|- +|.++...+|....+
T Consensus       126 ~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~  158 (171)
T 2pwj_A          126 LSAGLLGIRSERWSAYVV-DGKVKALNVEESPSD  158 (171)
T ss_dssp             CTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTC
T ss_pred             cccccCCcccceeEEEEE-CCEEEEEEeecCCCC
Confidence                      3 466665 999999999987665

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=92.47  E-value=0.23  Score=36.10  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=31.2

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCC------CC----CCCCCCCCcEEEE
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTT------CI----PNYPDKNLPTLFI  201 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~------~~----~~y~v~~LPTllv  201 (228)
                      .|+++.   ||.|+.+.+.|+++.-.|   .++.|+...      ..    ..++...+|++++
T Consensus        23 ~v~ly~~~~Cp~C~~ak~~L~~~~i~y---~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i   83 (103)
T 3nzn_A           23 KVIMYGLSTCVWCKKTKKLLTDLGVDF---DYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII   83 (103)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTBCE---EEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred             eEEEEcCCCCchHHHHHHHHHHcCCCc---EEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE
Confidence            355544   999999999999875332   333343311      11    2368999999877

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=92.33  E-value=0.018  Score=45.72  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=50.3

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------CCCCCCC---
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------IPNYPDK---  194 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------~~~y~v~---  194 (228)
                      +++||+.|     |++|..-.+.|.++..+|.  ++.|+-|..+..                        ...|++.   
T Consensus        33 Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~  112 (164)
T 4gqc_A           33 GRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHED  112 (164)
T ss_dssp             SSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEE
T ss_pred             CCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcccc
Confidence            35777776     9999998888888888884  588888877641                        1234442   


Q ss_pred             -------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        195 -------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       195 -------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                             ..|+.++. ++|.++...++....+
T Consensus       113 ~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~  144 (164)
T 4gqc_A          113 LKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLN  144 (164)
T ss_dssp             ETTEEEEECCEEEEECTTSBEEEEEECSCTTC
T ss_pred             cccCcCCeeeEEEEECCCCEEEEEEEeCCCCC
Confidence                   35766655 7899999988876655

>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1

Probab=92.18  E-value=0.12  Score=30.21  Aligned_cols=18  Identities=39%  Similarity=0.678  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy14385        105 ERVLQEYRRKRIAEMKAM  122 (228)
Q Consensus       105 d~~Le~yR~kRl~ELk~~  122 (228)
                      |..|+++|++||++|+..
T Consensus         4 d~ELeair~~rl~~lq~~   21 (27)
T 1yyb_A            4 DEELEALRRQRLAELQAK   21 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhc
Confidence            446999999999999875

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=92.16  E-value=0.57  Score=36.74  Aligned_cols=77  Identities=16%  Similarity=0.093  Sum_probs=52.9

Q ss_pred             ccCCCceEEeChhhHHHHHHhcCCCceEEE-Ee----ccchHHHHHHHHHHHHhCC-CcEEEEEeC--CCC---CCCCCC
Q psy14385        125 KSRFGRVLEINGDTYVQEVNNAGEGIWVVL-HF----IPLCSLINNHLSELAAKFP-TTKFIKSIS--TTC---IPNYPD  193 (228)
Q Consensus       125 ~~~fG~V~eIs~edf~~eV~~a~~~~~VVV-hf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~a--d~~---~~~y~v  193 (228)
                      ...++-|.++|.+++.... +.+  .++++ .|    .+.-..+.+.+..+|++|. .+.|+.+++  +..   ...|+.
T Consensus        10 ~~~~PLV~e~t~en~~~~~-~~~--~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl   86 (147)
T 3bj5_A           10 HNQLPLVIEFTEQTAPKIF-GGE--IKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGL   86 (147)
T ss_dssp             -----CEEECCTTTHHHHH-SSS--CCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTC
T ss_pred             hccCCeeEEeccccHHHHh-cCC--CceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCC
Confidence            3557789999998876553 332  34433 34    3345678899999999996 599999998  442   367887


Q ss_pred             CC--CcEEEEEEC
Q psy14385        194 KN--LPTLFIYFE  204 (228)
Q Consensus       194 ~~--LPTllvYk~  204 (228)
                      ..  +|++.++..
T Consensus        87 ~~~~~P~v~i~~~   99 (147)
T 3bj5_A           87 KKEECPAVRLITL   99 (147)
T ss_dssp             CGGGCSEEEEEEC
T ss_pred             CcccCCEEEEEec
Confidence            74  999999985

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=91.83  E-value=0.42  Score=39.91  Aligned_cols=68  Identities=18%  Similarity=0.307  Sum_probs=50.2

Q ss_pred             eEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC----------------------------------CC
Q psy14385        151 WVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC----------------------------------IP  189 (228)
Q Consensus       151 ~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~----------------------------------~~  189 (228)
                      |||+.|     |+.|..-.+.|.+++.+|.  +++++-|..+..                                  +.
T Consensus        33 ~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~  112 (224)
T 1prx_A           33 WGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAI  112 (224)
T ss_dssp             EEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHH
T ss_pred             eEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHH
Confidence            665554     9999999999999999984  588887765530                                  01


Q ss_pred             CCCCC------------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        190 NYPDK------------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       190 ~y~v~------------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      .|++.            .+|+++++ ++|+++..++|....|
T Consensus       113 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~g  154 (224)
T 1prx_A          113 LLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTG  154 (224)
T ss_dssp             HTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBC
T ss_pred             HhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCC
Confidence            24442            37998888 5899999999876555

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=91.62  E-value=0.25  Score=38.50  Aligned_cols=35  Identities=29%  Similarity=0.473  Sum_probs=28.2

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeC
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSIS  184 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~a  184 (228)
                      .++||.|    ||.|+.+.+.+..+.++|+. ++|+....
T Consensus        22 ~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   61 (184)
T 4dvc_A           22 SPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   61 (184)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEec
Confidence            4556655    99999999999999999984 77776643

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=91.35  E-value=2.7  Score=36.38  Aligned_cols=72  Identities=13%  Similarity=0.030  Sum_probs=49.1

Q ss_pred             ceEEe-ChhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCC-----CCC-----C----
Q psy14385        130 RVLEI-NGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIP-----NYP-----D----  193 (228)
Q Consensus       130 ~V~eI-s~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~-----~y~-----v----  193 (228)
                      .+..| +.+++...+...  +.++|+.|. ......+.|..+|..| ..+.|+.++..+.+.     +|.     +    
T Consensus       144 ~v~~i~~~~~l~~~l~~~--~~~~vi~fs-~~~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~  220 (298)
T 3ed3_A          144 YVKKFVRIDTLGSLLRKS--PKLSVVLFS-KQDKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYL  220 (298)
T ss_dssp             CEEECSCGGGHHHHHTSC--SSEEEEEEE-SSSSCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHH
T ss_pred             ccEEcCCHHHHHHHHhcC--CceEEEEEc-CCCcchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcchhhhh
Confidence            47778 556666555543  356777771 1122447899999999 679999998776442     222     2    


Q ss_pred             ---------CCCcEEEEEEC
Q psy14385        194 ---------KNLPTLFIYFE  204 (228)
Q Consensus       194 ---------~~LPTllvYk~  204 (228)
                               ...|+|++|+.
T Consensus       221 ~~~~~~~~~~~~P~lv~~~~  240 (298)
T 3ed3_A          221 QKVIPEQRQSDKSKLVVFDA  240 (298)
T ss_dssp             HHHHHHHTTCSSCEEEEEET
T ss_pred             hcccccccccCCCeEEEEcC
Confidence                     77999999986

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=90.99  E-value=0.17  Score=41.28  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=28.3

Q ss_pred             eEEEEe---ccchHHHHHHH---HHHHHhCC-CcEEEEEeCC
Q psy14385        151 WVVLHF---IPLCSLINNHL---SELAAKFP-TTKFIKSIST  185 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L---~~LA~kyp-~~KFvkI~ad  185 (228)
                      .||.+|   ||.|+.+.+.|   .+|.++|| +++|+.++..
T Consensus        24 ~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~   65 (191)
T 3l9s_A           24 QVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVE   65 (191)
T ss_dssp             CEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECS
T ss_pred             eEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecc
Confidence            445555   99999999987   69999998 5899887754

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=90.17  E-value=0.24  Score=38.98  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             CceEEEEe----cc-chHHHHHHHHHHHHhCC----CcEEEEEeCC
Q psy14385        149 GIWVVLHF----IP-LCSLINNHLSELAAKFP----TTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~-~C~~l~~~L~~LA~kyp----~~KFvkI~ad  185 (228)
                      +++|||+|    |+ .|....+.|.++.++|.    ++.|+-|..+
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d   73 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD   73 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECC
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECC
Confidence            46888888    97 59999999999999983    5888877654

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=89.31  E-value=0.47  Score=35.50  Aligned_cols=63  Identities=13%  Similarity=0.136  Sum_probs=41.3

Q ss_pred             hhHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEE
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFI  201 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllv  201 (228)
                      .++++.+.+..   .|||+.        ||.|+.....|..+     ++.|..+|.+.-       ....+-..+|.+  
T Consensus         6 ~~~v~~~i~~~---~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-----gi~y~~~di~~d~~~~~~l~~~~g~~tvP~i--   75 (111)
T 3zyw_A            6 NLRLKKLTHAA---PCMLFMKGTPQEPRCGFSKQMVEILHKH-----NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQL--   75 (111)
T ss_dssp             HHHHHHHHTSS---SEEEEESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--
T ss_pred             HHHHHHHHhcC---CEEEEEecCCCCCcchhHHHHHHHHHHc-----CCCeEEEECcCCHHHHHHHHHHHCCCCCCEE--
Confidence            34555555443   577765        99999999998864     345666666542       122366889997  


Q ss_pred             EECCEEEe
Q psy14385        202 YFEGKMQS  209 (228)
Q Consensus       202 Yk~G~~v~  209 (228)
                      |-+|+.++
T Consensus        76 fi~g~~iG   83 (111)
T 3zyw_A           76 YVSGELIG   83 (111)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEe
Confidence            55998765

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=89.19  E-value=0.74  Score=39.12  Aligned_cols=67  Identities=7%  Similarity=-0.028  Sum_probs=45.4

Q ss_pred             CceEEEEe-----ccchH-----HHHHHHHHHHHhCCCcEEEEEeCCCC-----------C---------------CCCC
Q psy14385        149 GIWVVLHF-----IPLCS-----LINNHLSELAAKFPTTKFIKSISTTC-----------I---------------PNYP  192 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~-----~l~~~L~~LA~kyp~~KFvkI~ad~~-----------~---------------~~y~  192 (228)
                      +++|||.|     |+.|.     .-.+.|.++   |.++.++-|..+..           .               ..|+
T Consensus        48 Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~yG  124 (224)
T 3keb_A           48 HTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYG  124 (224)
T ss_dssp             TCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTT
T ss_pred             CCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHhC
Confidence            35777777     99999     544555544   77788888877630           1               1255


Q ss_pred             CCC---------CcEEEEE-ECCEEEeEEeCccccC
Q psy14385        193 DKN---------LPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       193 v~~---------LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      +..         .|+.+|+ ++|.++...++....+
T Consensus       125 v~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~  160 (224)
T 3keb_A          125 VLITEYPLSGYTSPAIILADAANVVHYSERLANTRD  160 (224)
T ss_dssp             CBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTC
T ss_pred             CccccccccCCccCEEEEEcCCCEEEEEEecCCCCC
Confidence            543         6988888 4899998887765443

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=88.77  E-value=1.4  Score=39.09  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe----c-cchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCC--C
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----I-PLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDK--N  195 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~-~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~--~  195 (228)
                      .+..|.+++.+++..... .+  .+++|.|    + ..|..+...+..+|.+|. .+.|+.++++..   ...|++.  .
T Consensus       217 ~~p~v~elt~~~~~~~~~-~~--~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~~~~~~gl~~~~  293 (382)
T 2r2j_A          217 CVPLVREITFENGEELTE-EG--LPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPAD  293 (382)
T ss_dssp             HSCSSEECCHHHHHHHHT-TC--CCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHHHHHHTTCCGGG
T ss_pred             ccCceEecChhhHHHHhc-CC--CcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHHHHHHcCCCccC
Confidence            367788999888876543 32  3444444    2 345556666777777775 699999999874   3566665  7


Q ss_pred             CcEEEEEECCEE
Q psy14385        196 LPTLFIYFEGKM  207 (228)
Q Consensus       196 LPTllvYk~G~~  207 (228)
                      +|++.++..+..
T Consensus       294 ~P~i~i~~~~~~  305 (382)
T 2r2j_A          294 CPVIAIDSFRHM  305 (382)
T ss_dssp             CSEEEEECSSCE
T ss_pred             CCEEEEEcchhc
Confidence            899988876543

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=88.45  E-value=0.62  Score=36.76  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=27.6

Q ss_pred             CceEEEEe----cc-chHHHHHHHHHHHHhC----CCcEEEEEeCC
Q psy14385        149 GIWVVLHF----IP-LCSLINNHLSELAAKF----PTTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~-~C~~l~~~L~~LA~ky----p~~KFvkI~ad  185 (228)
                      |++|||+|    |+ .|....+.|.+|.+++    .++.|+-|..+
T Consensus        32 Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           32 GKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            46899988    86 7988888887776655    35888877543

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=88.05  E-value=1.3  Score=36.96  Aligned_cols=73  Identities=15%  Similarity=0.189  Sum_probs=50.4

Q ss_pred             CCCceEEeChhhHHHHHHhcCCCceEEEEe-cc---ch----HHHHHHHHHHHHhCC-C---cEEEEEeCCCC---CCCC
Q psy14385        127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF-IP---LC----SLINNHLSELAAKFP-T---TKFIKSISTTC---IPNY  191 (228)
Q Consensus       127 ~fG~V~eIs~edf~~eV~~a~~~~~VVVhf-~~---~C----~~l~~~L~~LA~kyp-~---~KFvkI~ad~~---~~~y  191 (228)
                      .++.|.++|.+++.. +. .+   +++|+| ..   .+    ..+...+..+|++|. .   +.|+.++++..   ...|
T Consensus       112 ~~Plv~e~t~~n~~~-~~-~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~f  186 (252)
T 2h8l_A          112 IFGICPHMTEDNKDL-IQ-GK---DLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDF  186 (252)
T ss_dssp             SSCSSCEECTTTHHH-HS-SS---SEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGG
T ss_pred             ccCCeeecccccHhh-hc-CC---CeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHc
Confidence            367899999888776 43 22   344444 21   11    246777888999985 3   99999999874   3667


Q ss_pred             CC----CCCcEEEEEEC
Q psy14385        192 PD----KNLPTLFIYFE  204 (228)
Q Consensus       192 ~v----~~LPTllvYk~  204 (228)
                      ++    ..+|+++++..
T Consensus       187 gl~~~~~~~P~v~i~~~  203 (252)
T 2h8l_A          187 GLESTAGEIPVVAIRTA  203 (252)
T ss_dssp             TCCCCSCSSCEEEEECT
T ss_pred             CCCCccCCCCEEEEEeC
Confidence            77    47999999853

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=87.78  E-value=0.29  Score=37.87  Aligned_cols=67  Identities=12%  Similarity=0.099  Sum_probs=41.2

Q ss_pred             hhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------C-CCCCCCCCcEEEEEECC
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------I-PNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~-~~y~v~~LPTllvYk~G  205 (228)
                      ++|.+.+ +..   .|+|+-   ||.|+.+...|.+...-.+...++.|+.+..       . ...+.+.+|++  |-+|
T Consensus         5 ~~~~~ii-~~~---~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~I--fI~G   78 (127)
T 3l4n_A            5 KEYSLIL-DLS---PIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNL--LVNG   78 (127)
T ss_dssp             HHHHHHH-TSC---SEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred             HHHHHHH-ccC---CEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceE--EECC
Confidence            3455444 332   477766   9999999999988411123445555554321       1 23477899998  5589


Q ss_pred             EEEe
Q psy14385        206 KMQS  209 (228)
Q Consensus       206 ~~v~  209 (228)
                      +.++
T Consensus        79 ~~IG   82 (127)
T 3l4n_A           79 VSRG   82 (127)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            8764

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=86.94  E-value=0.95  Score=35.69  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeC
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSIS  184 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~a  184 (228)
                      ..+|+.|    ||.|..+.+.|..+.++|+ .+.|..+..
T Consensus        26 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           26 KIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             CeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            3445555    9999999999999999997 477776654

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.56  E-value=2.1  Score=34.82  Aligned_cols=87  Identities=9%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             CCceEEe-ChhhHHHHHHhc-----CCCceEEEEe----ccchHHHHHH------HHHHHHhCCCcEEEEEeCCCC----
Q psy14385        128 FGRVLEI-NGDTYVQEVNNA-----GEGIWVVLHF----IPLCSLINNH------LSELAAKFPTTKFIKSISTTC----  187 (228)
Q Consensus       128 fG~V~eI-s~edf~~eV~~a-----~~~~~VVVhf----~~~C~~l~~~------L~~LA~kyp~~KFvkI~ad~~----  187 (228)
                      ||...+. -...|.+.+..|     ...++++|++    |..|..+...      +.++-.+  +.-|...|++.-    
T Consensus        28 yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~--nfV~w~~dv~~~e~~~  105 (178)
T 2ec4_A           28 YGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ--NFITWAWDLTKDSNRA  105 (178)
T ss_dssp             HCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH--TEEEEEEECCSHHHHH
T ss_pred             hCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc--CEEEEEEeCCCchhhh
Confidence            3543332 456677777765     3467999999    8888887632      2222222  445567776642    


Q ss_pred             -----------------CCCCCCCCCcEEEEEE----CCEEEeEEeCccc
Q psy14385        188 -----------------IPNYPDKNLPTLFIYF----EGKMQSQMVGPDE  216 (228)
Q Consensus       188 -----------------~~~y~v~~LPTllvYk----~G~~v~~lvG~~~  216 (228)
                                       +.+|++...|++++..    .++++.++.|...
T Consensus       106 ~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~  155 (178)
T 2ec4_A          106 RFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTT  155 (178)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCC
T ss_pred             hhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCC
Confidence                             1338999999999994    2477888988653

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=86.40  E-value=0.83  Score=35.59  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhC--C-CcEEEEEeC
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKF--P-TTKFIKSIS  184 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~ky--p-~~KFvkI~a  184 (228)
                      ..+|+.|    ||.|+.+.+.+..+.++|  + +++|+..+.
T Consensus        28 ~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           28 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            3445444    999999999999999998  5 588876543

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=86.38  E-value=0.67  Score=38.64  Aligned_cols=35  Identities=11%  Similarity=0.072  Sum_probs=29.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS  184 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a  184 (228)
                      |++|||+|    |++|+ -.+.|.+|.++|.  ++.++-|.+
T Consensus        56 GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~   96 (215)
T 2i3y_A           56 GKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPC   96 (215)
T ss_dssp             TSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred             CCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEc
Confidence            46888888    99999 6778999999995  478887764

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=86.30  E-value=0.66  Score=36.21  Aligned_cols=63  Identities=11%  Similarity=0.064  Sum_probs=40.3

Q ss_pred             hhHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEE
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFI  201 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllv  201 (228)
                      .++++.+.+..   .|+|+.        |+.|+.+...|..+     ++.|..+|.+..       ....+...+|.|  
T Consensus        25 ~~~v~~~i~~~---~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-----gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V--   94 (135)
T 2wci_A           25 IEKIQRQIAEN---PILLYMKGSPKLPSCGFSAQAVQALAAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQL--   94 (135)
T ss_dssp             HHHHHHHHHHC---SEEEEESBCSSSBSSHHHHHHHHHHHTT-----CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--
T ss_pred             HHHHHHHhccC---CEEEEEEecCCCCCCccHHHHHHHHHHc-----CCceEEEECCCCHHHHHHHHHHHCCCCcCEE--
Confidence            34444444443   366654        88899888888765     466777777642       123466788975  


Q ss_pred             EECCEEEe
Q psy14385        202 YFEGKMQS  209 (228)
Q Consensus       202 Yk~G~~v~  209 (228)
                      |.+|+.++
T Consensus        95 fI~G~~iG  102 (135)
T 2wci_A           95 WVDGELVG  102 (135)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEE
Confidence            66998764

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=85.54  E-value=0.94  Score=37.41  Aligned_cols=75  Identities=11%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             EEeChhhHHHHHHhcCCCceEEEEe-ccchHHHHHHHHHHHHhCCCcEEEEEeCC--CCCCCCCCCCCcEEEEEE-CCEE
Q psy14385        132 LEINGDTYVQEVNNAGEGIWVVLHF-IPLCSLINNHLSELAAKFPTTKFIKSIST--TCIPNYPDKNLPTLFIYF-EGKM  207 (228)
Q Consensus       132 ~eIs~edf~~eV~~a~~~~~VVVhf-~~~C~~l~~~L~~LA~kyp~~KFvkI~ad--~~~~~y~v~~LPTllvYk-~G~~  207 (228)
                      ..++.+++..-+...+ ..++++.| -..|.........+. .++.+.|..+...  ....+|++.++||+++|. ||+.
T Consensus       141 ~~~~~~~l~~~~~~~~-~~~~al~f~~~~~~~~~~~~~d~~-~~~~i~v~~~~~~~~~l~~~f~v~~~Pslvl~~~~g~~  218 (244)
T 3q6o_A          141 EPAXLEEIDGFFARNN-EEYLALIFEXGGSYLAREVALDLS-QHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSV  218 (244)
T ss_dssp             SCCCHHHHHTHHHHCC-CSEEEEEEECTTCCHHHHHHHHTT-TCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCE
T ss_pred             ccccHHHHHHHhhcCC-CceEEEEEEECCcchHHHHHHHhc-cCCceEEEEEeCchHHHHHHcCCCCCCeEEEEeCCCCe
Confidence            3456666665555443 45777777 445655444443333 2456777777764  357899999999997777 4544


Q ss_pred             E
Q psy14385        208 Q  208 (228)
Q Consensus       208 v  208 (228)
                      .
T Consensus       219 ~  219 (244)
T 3q6o_A          219 S  219 (244)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=85.28  E-value=0.67  Score=36.75  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=28.1

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeC
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSIS  184 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~a  184 (228)
                      ..+|+.|    ||.|..+.+.|.+|.++|+ .+.|..+..
T Consensus        23 ~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           23 KIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             SEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             CcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            4555555    9999999999999999997 477776664

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=85.18  E-value=1.1  Score=33.03  Aligned_cols=63  Identities=17%  Similarity=0.183  Sum_probs=40.3

Q ss_pred             hHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEE
Q psy14385        138 TYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIY  202 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvY  202 (228)
                      ++++.+.+..   .|+|+-        ||.|+.....|..+     ++.|..++.+..       ....+...+|.+  |
T Consensus         9 ~~v~~~i~~~---~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~-----gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i--f   78 (109)
T 3ipz_A            9 DTLEKLVNSE---KVVLFMKGTRDFPMCGFSNTVVQILKNL-----NVPFEDVNILENEMLRQGLKEYSNWPTFPQL--Y   78 (109)
T ss_dssp             HHHHHHHTSS---SEEEEESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE--E
T ss_pred             HHHHHHHccC---CEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHHCCCCCCeE--E
Confidence            4555555443   466654        88888888888875     345666666532       123367899965  6


Q ss_pred             ECCEEEeE
Q psy14385        203 FEGKMQSQ  210 (228)
Q Consensus       203 k~G~~v~~  210 (228)
                      -||+.++.
T Consensus        79 i~g~~iGG   86 (109)
T 3ipz_A           79 IGGEFFGG   86 (109)
T ss_dssp             ETTEEEEC
T ss_pred             ECCEEEeC
Confidence            69987653

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=85.15  E-value=0.72  Score=35.02  Aligned_cols=66  Identities=14%  Similarity=0.076  Sum_probs=41.9

Q ss_pred             hHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEE
Q psy14385        138 TYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIY  202 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvY  202 (228)
                      ++++.+.+..   .|||+-        ||.|+.+...|..+.-.|+  .|..++.+..       ....+-+.+|.+  |
T Consensus         7 ~~v~~~i~~~---~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~--~~~~~dv~~~~~~~~~l~~~sg~~tvP~v--f   79 (121)
T 3gx8_A            7 KAIEDAIESA---PVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPA--KFAAYNVLEDPELREGIKEFSEWPTIPQL--Y   79 (121)
T ss_dssp             HHHHHHHHSC---SEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGG--GEEEEECTTCHHHHHHHHHHHTCCSSCEE--E
T ss_pred             HHHHHHhccC---CEEEEEeccCCCCCCccHHHHHHHHHHcCCCcc--eEEEEEecCCHHHHHHHHHHhCCCCCCeE--E
Confidence            4555555543   466664        8999999999988743322  2666665542       123466789987  5


Q ss_pred             ECCEEEeE
Q psy14385        203 FEGKMQSQ  210 (228)
Q Consensus       203 k~G~~v~~  210 (228)
                      -+|+.++.
T Consensus        80 I~g~~iGG   87 (121)
T 3gx8_A           80 VNKEFIGG   87 (121)
T ss_dssp             ETTEEEES
T ss_pred             ECCEEEec
Confidence            69987653

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=84.56  E-value=0.89  Score=37.47  Aligned_cols=35  Identities=14%  Similarity=0.081  Sum_probs=28.5

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS  184 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a  184 (228)
                      |++|||+|    |++|. -.+.|.+|.++|.  ++.++-|.+
T Consensus        38 GKvvll~F~At~C~~c~-e~p~L~~l~~~~~~~g~~vlgvs~   78 (207)
T 2r37_A           38 GKYVLFVNVASYGGLTG-QYIELNALQEELAPFGLVILGFPC   78 (207)
T ss_dssp             TSEEEEEEECSSSTTTT-HHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred             CCEEEEEEeCCCCCChH-HHHHHHHHHHHhccCCEEEEEEEC
Confidence            46889988    99994 6688999999995  488887764

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=84.46  E-value=1.4  Score=31.99  Aligned_cols=51  Identities=12%  Similarity=0.165  Sum_probs=36.4

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC-------C-CCCCCCCcEEEEEECCEEE
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTCI-------P-NYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~-------~-~y~v~~LPTllvYk~G~~v  208 (228)
                      |+|+-   ||.|......|.+.     ++.|..+|.+.-.       . +.+.+.+|+++ +.||..+
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~~-----gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~-i~Dg~~l   67 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTAN-----RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK-FADGSTL   67 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE-ETTSCEE
T ss_pred             EEEEcCCCCHhHHHHHHHHHhc-----CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE-EeCCEEE
Confidence            55555   99999999999773     5677788877521       1 23678999975 4678654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=84.14  E-value=3.1  Score=34.20  Aligned_cols=52  Identities=17%  Similarity=0.246  Sum_probs=35.3

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      .|+++.   |+.|+.....|+..     ++.|..++.+.-      ...++...+|+|+  .+|+.+.
T Consensus       171 ~i~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~--~~g~~i~  231 (241)
T 1nm3_A          171 SISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKHIG  231 (241)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEEEE
T ss_pred             eEEEEECCCChHHHHHHHHHHHc-----CCceEEEECCCchHHHHHHHHhCCCCcCEEE--ECCEEEE
Confidence            344444   99999999999875     344555555432      2457889999985  4887543

>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}

Probab=83.27  E-value=16  Score=29.22  Aligned_cols=102  Identities=13%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe-ccchHH--HHHHHHHHH---HhCCCcEEE
Q psy14385        108 LQEYRRKRIAEMKAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF-IPLCSL--INNHLSELA---AKFPTTKFI  180 (228)
Q Consensus       108 Le~yR~kRl~ELk~~~~~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf-~~~C~~--l~~~L~~LA---~kyp~~KFv  180 (228)
                      .+.|=+.=.+.|++.....+|   .++ |.++-...+.++...+.|||+= |+ |..  ..|....-+   .+.|+ .++
T Consensus         8 ~~mY~~~lV~pmR~ELt~~Gf---~eL~T~e~Vd~a~~~~~GTtlVvVNSVCG-CAag~ARPaa~~a~l~~~kkPD-~lv   82 (147)
T 3fhk_A            8 YEEYMRQLVVPMRRELTGAGF---EELTTAEEVENFMEKAEGTTLVVVNSVCG-CAAGLARPAATQAVLQNDKTPD-NTV   82 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC---EECCSHHHHHHHHHHCCSEEEEEEECSSH-HHHHTHHHHHHHHHHHCSSCCS-EEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCc---cccCCHHHHHHHHhcCCCcEEEEEecccc-ccccccCHHHHHHhhhcCCCCC-ceE
Confidence            577888888888887766664   455 5555555566533234566665 65 543  444443332   34465 444


Q ss_pred             EEeCCC----------CCCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        181 KSISTT----------CIPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       181 kI~ad~----------~~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      .+=+-.          ....||- +-|++.+||+|++|+-+-.-+
T Consensus        83 TVFAGqDkEAt~~aR~yf~~~pP-SSPS~ALfKdGelVh~ieRh~  126 (147)
T 3fhk_A           83 TVFAGQDKEATAKMREYFTGAAP-SSPSMALLKGKEVVHFIPRHE  126 (147)
T ss_dssp             EEETTTSHHHHHHHHTTSTTCCC-CSSEEEEEETTEEEEEECGGG
T ss_pred             EeccCCCHHHHHHHHHhcCCCCC-CCchheeeeCCEEEEEeehhh
Confidence            444332          1244443 669999999999998775433

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=82.18  E-value=4.6  Score=32.90  Aligned_cols=78  Identities=15%  Similarity=0.074  Sum_probs=51.2

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe-----ccchHH-HHHHHHHHHHhC--CCc-EEEEEeCCCC-----------CC
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSL-INNHLSELAAKF--PTT-KFIKSISTTC-----------IP  189 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf-----~~~C~~-l~~~L~~LA~ky--p~~-KFvkI~ad~~-----------~~  189 (228)
                      .+..++-.+|+.       +++||+.|     ||.|.. =.+.|.+++.+|  .++ .++-|..+..           .+
T Consensus        35 ~~~~vsLsd~~~-------Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~  107 (176)
T 4f82_A           35 GPNACSVRDQVA-------GKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTA  107 (176)
T ss_dssp             EEEEEEHHHHHT-------TCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             CceEEeHHHHhC-------CCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence            445555555541       24676655     999999 788888888887  357 7777776641           11


Q ss_pred             ---------------CCCC-----------CCCcEEEEEECCEEEeEEeCc
Q psy14385        190 ---------------NYPD-----------KNLPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       190 ---------------~y~v-----------~~LPTllvYk~G~~v~~lvG~  214 (228)
                                     .|++           +..|+.+|.++|.++...++.
T Consensus       108 ~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII~dG~I~~~~~~~  158 (176)
T 4f82_A          108 GKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVIDGGVVKTLAVEA  158 (176)
T ss_dssp             TTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEEETTEEEEEEECC
T ss_pred             CCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEEcCCEEEEEEEcC
Confidence                           1222           123655555999999999875

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=80.50  E-value=1.6  Score=36.74  Aligned_cols=68  Identities=18%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             eEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------C--------------CCC
Q psy14385        151 WVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------I--------------PNY  191 (228)
Q Consensus       151 ~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------~--------------~~y  191 (228)
                      |||++|     |+.|..-.+.|.+++.+|.  +++++-|..+..                  .              ..|
T Consensus        31 ~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~y  110 (233)
T 2v2g_A           31 WGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKL  110 (233)
T ss_dssp             EEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHT
T ss_pred             eEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHh
Confidence            888887     9999999999999998883  688887776531                  0              123


Q ss_pred             CCC------------CCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        192 PDK------------NLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       192 ~v~------------~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      ++.            .+|+++|+ ++|+++..++|....|
T Consensus       111 gv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~g  150 (233)
T 2v2g_A          111 GMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTG  150 (233)
T ss_dssp             TCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBC
T ss_pred             CCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCC
Confidence            332            47888888 5899999998876555

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=80.07  E-value=7.4  Score=32.35  Aligned_cols=75  Identities=13%  Similarity=0.084  Sum_probs=50.1

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe-c------cc-hHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCC
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-I------PL-CSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDK  194 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf-~------~~-C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~  194 (228)
                      ..++-|.+++.+++.... . +. ..+++.+ .      .. +..+...+..+|++|..+.|+-+|+++.   ...|+..
T Consensus       113 ~~~Plv~e~t~~n~~~~~-~-~~-~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~kki~F~~~d~~~~~~~l~~fgl~  189 (250)
T 3ec3_A          113 HALPLVGHRKTSNDAKRY-S-KR-PLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGLS  189 (250)
T ss_dssp             HSSCTEEEECTTTHHHHS-C-SS-SEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCS
T ss_pred             cCCCceeecCccchhhhh-c-cC-ccEEEEEecccccccchhHHHHHHHHHHHHHhhcceeEEEEcHHHHHHHHHHcCCC
Confidence            357889999988887644 2 22 2333333 1      22 2447888999999999999999998864   3556654


Q ss_pred             --CC-cEEEEEE
Q psy14385        195 --NL-PTLFIYF  203 (228)
Q Consensus       195 --~L-PTllvYk  203 (228)
                        .. |.++++.
T Consensus       190 ~~~~~p~~~~~~  201 (250)
T 3ec3_A          190 ESGGDVNAAILD  201 (250)
T ss_dssp             SCSCSCEEEEEC
T ss_pred             ccCCCcEEEEEc
Confidence              34 4666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	4e-25
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-05

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.9 bits (238), Expect = 4e-25
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 48  NDILRAKGIIPQKEKEVTE-DDIVNLVEQTVKEKQGKGEKELGDMDLDDLDEL--EDEED 104
           ND  + K      +       +I+  +           ++ +         EL  +D+ED
Sbjct: 14  NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKED 73

Query: 105 ERVLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IP 158
           E  L++YRR+ + +M + ++   R+G V E+  G+ +++ +    +   +V++     + 
Sbjct: 74  EGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVR 133

Query: 159 LCSLINNHLSELAAKFPTTKFIK--SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
            C  +N+ L  LAA++P  KF K  + +T     +    LPTL +Y  G++ S  +   E
Sbjct: 134 GCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAE 193

Query: 217 F 217
            
Sbjct: 194 Q 194

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 119 MKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCS---LINNHLSELAAKFP 175
           M+A+      G+V E+N DT+   V  AG+   V+  F   C     +     +LA ++ 
Sbjct: 1   MEAIV-----GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL 55

Query: 176 TTKFIKSISTTCIPN----YPDKNLPTLFIYFEGKMQSQMVGPDE 216
              F+K                + +PT  I  E  +  ++ G   
Sbjct: 56  DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.98
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.71
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.69
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.69
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.66
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.65
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.62
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.61
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.59
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.59
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.58
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.58
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.56
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.54
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.47
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.37
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.33
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.25
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.23
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.21
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.2
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.16
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.14
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.12
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.08
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.97
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.91
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.81
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.77
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.62
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.19
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	97.97
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	97.91
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	97.84
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	97.81
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	97.81
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	97.78
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	97.78
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	97.75
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	97.73
d1wjka_	100	Thioredoxin-like structure containing protein C330	97.7
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	97.65
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	97.58
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	97.41
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.27
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	97.25
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	96.98
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.39
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.17
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	95.02
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	94.86
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	94.43
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	94.24
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	94.07
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	92.22
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	91.33
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	90.32
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	90.27
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	89.09
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	88.85
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	88.35
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	88.3
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	87.5
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	87.25
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	86.96
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	86.37
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	85.66
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	85.52
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	85.47
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	85.14
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	84.55
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	83.33
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	83.22
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	82.34
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	82.02

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.8e-32  Score=233.87  Aligned_cols=138  Identities=25%  Similarity=0.484  Sum_probs=121.0

Q ss_pred             cCCChhHHhhc-cChhcHHHHHHHHHHHHHHHHHHHh-ccCCCceEEeC-hhhHHHHHHhcCCCceEEEEe----ccchH
Q psy14385         89 GDMDLDDLDEL-EDEEDERVLQEYRRKRIAEMKAMAE-KSRFGRVLEIN-GDTYVQEVNNAGEGIWVVLHF----IPLCS  161 (228)
Q Consensus        89 e~~~ldeL~el-edeeDd~~Le~yR~kRl~ELk~~~~-~~~fG~V~eIs-~edf~~eV~~a~~~~~VVVhf----~~~C~  161 (228)
                      ...++++.+.+ +|++|++||++||++||+||++... +++||.|++|+ .++|...|++++++++|||||    |++|+
T Consensus        57 ~~~~~~e~e~~~~d~~de~~l~~~r~~Rl~el~~~~~~~~~~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~  136 (217)
T d2trcp_          57 RKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCD  136 (217)
T ss_dssp             CSSCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHH
T ss_pred             cccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhccccCCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChh
Confidence            34455555433 3567889999999999999987554 67899999995 688999999888888999999    99999


Q ss_pred             HHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCccccC-CCCCcccc
Q psy14385        162 LINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDAN  226 (228)
Q Consensus       162 ~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~  226 (228)
                      .|+++|..||++||+++|++|+++.  ++.+|+++++|||++|+||+++++++|+..+| ++||.+++
T Consensus       137 ~~~~~l~~lA~~~~~vkF~ki~~~~~~~~~~~~i~~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~l  204 (217)
T d2trcp_         137 ALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADV  204 (217)
T ss_dssp             HHHHHHHHHHTTCTTSEEEEEEHHHHTCSTTSCGGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHH
T ss_pred             hhhhhHHHHhhhcccceEEEEccccchhHHhCCCCCCCeEEEEECCEEEEEEECccccccccCCHHHH
Confidence            9999999999999999999999987  47899999999999999999999999999998 99987654

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.71  E-value=1.6e-17  Score=126.49  Aligned_cols=89  Identities=25%  Similarity=0.337  Sum_probs=80.2

Q ss_pred             cCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC----CCCCCCCCCCc
Q psy14385        126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT----CIPNYPDKNLP  197 (228)
Q Consensus       126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~----~~~~y~v~~LP  197 (228)
                      ..-|.|.+|+.++|...++.++ +.+|||+|    |++|+.|.++|++||++|+++.|+++|.+.    .+.+|+++++|
T Consensus         3 ~~~g~v~~~~~d~f~~~l~~~~-~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V~~~P   81 (112)
T d1f9ma_           3 AIVGKVTEVNKDTFWPIVKAAG-DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVP   81 (112)
T ss_dssp             CCTTSEEEECTTTHHHHHHTCT-TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             ccceeeEEeCHHHHHHHHHHcC-CCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccchhhHhheeeccCC
Confidence            3468999999999999988664 46899998    999999999999999999999999999875    24789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+.+++++|..
T Consensus        82 t~~~~k~G~~v~~~~G~~   99 (112)
T d1f9ma_          82 TFKILKENSVVGEVTGAK   99 (112)
T ss_dssp             EEEEEETTEEEEEEESSC
T ss_pred             EEEEEECCEEEEEEeCCC
Confidence            999999999999999975

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.69  E-value=6.2e-17  Score=123.49  Aligned_cols=88  Identities=25%  Similarity=0.468  Sum_probs=77.7

Q ss_pred             ccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCC
Q psy14385        125 KSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNL  196 (228)
Q Consensus       125 ~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~L  196 (228)
                      +..|.++++| |.++|.+.+. ++  .+|||+|    |++|+.|.+.|++||.+|++++|++||+++.   +..|++.++
T Consensus         4 ~~~~p~vi~i~s~~~~~~~~~-~~--~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V~~~   80 (113)
T d1r26a_           4 RARYPSVVDVYSVEQFRNIMS-ED--ILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQL   80 (113)
T ss_dssp             SSCCSCCEEECCHHHHHHHHH-SS--SCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSS
T ss_pred             ccCCCceEEeCCHHHHHHHHc-CC--CeEEEEEECCCCccchhhceeccccccccccccccccccccchhhHHHccccCC
Confidence            4578899999 5666776554 43  5899999    9999999999999999999999999999985   489999999


Q ss_pred             cEEEEEECCEEEeEEeCcc
Q psy14385        197 PTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       197 PTllvYk~G~~v~~lvG~~  215 (228)
                      ||+++|++|+.+.+++|..
T Consensus        81 Pt~~~~~~G~~v~~~~G~~   99 (113)
T d1r26a_          81 PTFIIARSGKMLGHVIGAN   99 (113)
T ss_dssp             SEEEEEETTEEEEEEESSC
T ss_pred             CEEEEEECCEEEEEEeCCC
Confidence            9999999999999999965

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-16  Score=121.08  Aligned_cols=85  Identities=21%  Similarity=0.348  Sum_probs=77.2

Q ss_pred             ceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|..| |.++|.+.+..++ +..|||+|    |++|+.+.|.|++||.+|+++.|+++|+++.   +..|++.++||+++
T Consensus         2 ~v~~i~s~~~f~~~l~~~~-~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~   80 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSGAG-SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQF   80 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTT-TSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred             ceEEcCCHHHHHHHHHhCC-CCEEEEEEECCCCCCccccchhhhccccccccccccccccccchhhhhhcCceeceEEEE
Confidence            36778 7899999998764 56899988    9999999999999999999999999999985   58999999999999


Q ss_pred             EECCEEEeEEeCcc
Q psy14385        202 YFEGKMQSQMVGPD  215 (228)
Q Consensus       202 Yk~G~~v~~lvG~~  215 (228)
                      |++|+.+++++|..
T Consensus        81 ~~~G~~v~~~~G~~   94 (107)
T d1gh2a_          81 FRNKVRIDQYQGAD   94 (107)
T ss_dssp             EETTEEEEEEESSC
T ss_pred             EECCEEEEEEeCCC
Confidence            99999999999964

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-16  Score=118.18  Aligned_cols=84  Identities=20%  Similarity=0.425  Sum_probs=74.6

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |.+| |.++|.+.+..+ .+.+|||+|    |++|+.+.++|.+++.+|+++.|+++|+++.   +..|+++++||+++|
T Consensus         2 v~~i~s~~~f~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~   80 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAA-GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFF   80 (105)
T ss_dssp             CEEECSHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             eEEcCCHHHHHHHHHhC-CCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCceEEEEEEEE
Confidence            5678 567777777655 357899999    9999999999999999999999999999985   589999999999999


Q ss_pred             ECCEEEeEEeCcc
Q psy14385        203 FEGKMQSQMVGPD  215 (228)
Q Consensus       203 k~G~~v~~lvG~~  215 (228)
                      +||+.+++++|..
T Consensus        81 ~~G~~v~~~~G~~   93 (105)
T d2ifqa1          81 KKGQKVGEFSGAN   93 (105)
T ss_dssp             ETTEEEEEEESCC
T ss_pred             ECCEEEEEEeCCC
Confidence            9999999999964

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.66  E-value=2.1e-16  Score=119.76  Aligned_cols=88  Identities=28%  Similarity=0.530  Sum_probs=77.8

Q ss_pred             CCceEEe-ChhhHHHHHHhc-CCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        128 FGRVLEI-NGDTYVQEVNNA-GEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       128 fG~V~eI-s~edf~~eV~~a-~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      -|.|+.| |.++|.+.+.++ +.+.+|||+|    |++|+.|.|.|++++++|++++|+++|+++.   +..|+++++||
T Consensus         3 ~g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt   82 (113)
T d1ti3a_           3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CCcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCeecccce
Confidence            4889999 778777777654 2347899999    9999999999999999999999999999985   58899999999


Q ss_pred             EEEEECCEEEeEEeCcc
Q psy14385        199 LFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       199 llvYk~G~~v~~lvG~~  215 (228)
                      +++|+||+.+++++|..
T Consensus        83 ~~~~k~G~~v~~~~G~~   99 (113)
T d1ti3a_          83 FIFLKDGKLVDKTVGAD   99 (113)
T ss_dssp             EEEEETTEEEEEEECCC
T ss_pred             EEEEECCEEEEEEcCCC
Confidence            99999999999999964

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=4e-16  Score=118.53  Aligned_cols=89  Identities=25%  Similarity=0.472  Sum_probs=78.3

Q ss_pred             CCCceEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        127 RFGRVLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       127 ~fG~V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      .-|.|+.| |.++|.+.+.++. .+.+|||+|    |++|+.|.+.|++|++.|++++|++|++++.   +.+|+++++|
T Consensus         4 ~~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~~~P   83 (114)
T d1xfla_           4 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMP   83 (114)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             CCCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeeceeeccccceeeeE
Confidence            45889999 7888887776431 246899999    9999999999999999999999999999985   4789999999


Q ss_pred             EEEEEECCEEEeEEeCcc
Q psy14385        198 TLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~  215 (228)
                      |+++|++|+.+.+++|..
T Consensus        84 t~~~~~~G~~v~~~~G~~  101 (114)
T d1xfla_          84 TFMFLKEGKILDKVVGAK  101 (114)
T ss_dssp             EEEEEETTEEEEEEESCC
T ss_pred             EEEEEECCEEEEEEeCcC
Confidence            999999999999999964

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.62  E-value=1.5e-15  Score=112.92  Aligned_cols=81  Identities=16%  Similarity=0.278  Sum_probs=71.2

Q ss_pred             EEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEE
Q psy14385        132 LEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYF  203 (228)
Q Consensus       132 ~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk  203 (228)
                      ..| |.++|.+.+.+.   .+|||+|    |++|+.+.++|++||++|+++.|+++|+++.   ...|++.++||+++|+
T Consensus         3 ~~i~s~~~f~~~i~~~---~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k   79 (103)
T d1syra_           3 KIVTSQAEFDSIISQN---ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYK   79 (103)
T ss_dssp             EEECSHHHHHHHHHHC---SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred             EEeCCHHHHHHHHhCC---CcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcceeeeeeeecceEEEEEE
Confidence            445 567777766543   4788888    9999999999999999999999999999985   4899999999999999


Q ss_pred             CCEEEeEEeCcc
Q psy14385        204 EGKMQSQMVGPD  215 (228)
Q Consensus       204 ~G~~v~~lvG~~  215 (228)
                      +|+.+++++|..
T Consensus        80 ~G~~v~~~~G~~   91 (103)
T d1syra_          80 NGSSVDTLLGAN   91 (103)
T ss_dssp             TTEEEEEEESCC
T ss_pred             CCEEEEEEeCcC
Confidence            999999999964

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.61  E-value=1.7e-15  Score=113.21  Aligned_cols=85  Identities=19%  Similarity=0.242  Sum_probs=76.5

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|++||.++|.+.|.+++  .+|+|+|    |++|+.|.+.|.++|.+|++ +.|++||+++.   +..|+++++||+++
T Consensus         3 ~V~~lt~~~f~~~v~~~~--~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~   80 (108)
T d1thxa_           3 GVITITDAEFESEVLKAE--QPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRL   80 (108)
T ss_dssp             SEEECCGGGHHHHTTTCS--SCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred             CceECCHHHHHHHHHhCC--CcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEE
Confidence            488999999999887664  5788888    99999999999999999975 89999999974   58999999999999


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                      |++|+.+.++.|...
T Consensus        81 ~~~g~~v~~~~G~~~   95 (108)
T d1thxa_          81 VKGEQILDSTEGVIS   95 (108)
T ss_dssp             EETTEEEEEEESCCC
T ss_pred             EECCEEEEEEeCCCC
Confidence            999999999999754

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.59  E-value=2.4e-15  Score=111.41  Aligned_cols=84  Identities=20%  Similarity=0.404  Sum_probs=75.3

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      |.+|+.++|.+.|.+++  .+|+|+|    |++|+.|.+++.+++++|+ ...|++|+.+..   +.+|+++++||+++|
T Consensus         1 v~el~d~~f~~~v~~~~--~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESE--VPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTTTHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECchhhHHHHHHcCC--CcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            57899999999887653  6788888    9999999999999999996 589999999985   589999999999999


Q ss_pred             ECCEEEeEEeCccc
Q psy14385        203 FEGKMQSQMVGPDE  216 (228)
Q Consensus       203 k~G~~v~~lvG~~~  216 (228)
                      ++|+.+++++|...
T Consensus        79 ~~G~~v~~~~G~~~   92 (104)
T d1fb6a_          79 KNGERKESIIGAVP   92 (104)
T ss_dssp             ETTEEEEEEEECCC
T ss_pred             EcCeEEEEEeCCCC
Confidence            99999999999753

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.59  E-value=2.1e-15  Score=114.20  Aligned_cols=87  Identities=20%  Similarity=0.357  Sum_probs=76.3

Q ss_pred             CceEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        129 GRVLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       129 G~V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      |.|..| |.++|.+.+.++. .+.+|||+|    |++|+.+.+.|++||++|+ .+.|++||+++.   +..|+++++||
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   81 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCE
Confidence            789999 7888888886531 135899999    9999999999999999998 499999999874   58899999999


Q ss_pred             EEEEECCEEEeEEeCcc
Q psy14385        199 LFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       199 llvYk~G~~v~~lvG~~  215 (228)
                      +++|++|+.+.+++|..
T Consensus        82 ~~~~~~G~~v~~~~G~~   98 (112)
T d1ep7a_          82 FHVYKDGVKADDLVGAS   98 (112)
T ss_dssp             EEEEETTEEEEEEESCC
T ss_pred             EEEEECCEEEEEEeCcC
Confidence            99999999999999964

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=6.8e-15  Score=110.63  Aligned_cols=86  Identities=23%  Similarity=0.422  Sum_probs=77.2

Q ss_pred             CceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385        129 GRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTL  199 (228)
Q Consensus       129 G~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTl  199 (228)
                      +.|++| +.++|...+.+++ +++|||+|    |++|+.+.+.|++++.+|++ +.|++|+.++.   ..+|++.++||+
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~-~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~   83 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKAS-GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTF   83 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHT-TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CeEEEECCHHHHHHHHHhcC-CCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEE
Confidence            468899 6788988888764 67999999    99999999999999999985 89999999985   489999999999


Q ss_pred             EEEECCEEEeEEeCcc
Q psy14385        200 FIYFEGKMQSQMVGPD  215 (228)
Q Consensus       200 lvYk~G~~v~~lvG~~  215 (228)
                      ++|++|+.+++++|..
T Consensus        84 ~~~~~G~~v~~~~G~~   99 (111)
T d1xwaa_          84 VFLKNGVKVEEFAGAN   99 (111)
T ss_dssp             EEEETTEEEEEEESCC
T ss_pred             EEEECCEEEEEEeCCC
Confidence            9999999999999964

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=5.9e-15  Score=109.98  Aligned_cols=85  Identities=21%  Similarity=0.420  Sum_probs=76.4

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSISTTC---IPNYPDKNLPTLFI  201 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~---~~~y~v~~LPTllv  201 (228)
                      .|++||.++|.+.|.+++  .+|||+|    |++|+.+.+.+..+|.++ +.+.|+++++++.   +.+|++.++||+++
T Consensus         3 ~v~~lt~~~f~~~v~~~~--~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~   80 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKAD--GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             TEEECCTTTHHHHTTTCS--SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEE
T ss_pred             CceECCHHHHHHHHHhCC--CcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEE
Confidence            589999999999887654  6899999    999999999999999997 5799999999875   47899999999999


Q ss_pred             EECCEEEeEEeCccc
Q psy14385        202 YFEGKMQSQMVGPDE  216 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~  216 (228)
                      |++|+.+.+++|...
T Consensus        81 ~~~G~~v~~~~G~~~   95 (108)
T d2trxa_          81 FKNGEVAATKVGALS   95 (108)
T ss_dssp             EETTEEEEEEESCCC
T ss_pred             EECCEEEEEEeCCCC
Confidence            999999999999754

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.56  E-value=4.5e-15  Score=110.25  Aligned_cols=83  Identities=17%  Similarity=0.313  Sum_probs=73.3

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      .+++|.++|.+.+. ++  .+|||+|    |++|+.|.+.|.++|.+|+ .++|+++|++..   +..|++.++||+++|
T Consensus         2 ~i~lt~~~f~~~i~-~~--k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           2 TMTLTDANFQQAIQ-GD--KPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHTT-SS--SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             EEEECHHHHHHHHh-CC--CcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEE
Confidence            46789999987664 32  5788888    9999999999999999997 599999999984   588999999999999


Q ss_pred             ECCEEEeEEeCccc
Q psy14385        203 FEGKMQSQMVGPDE  216 (228)
Q Consensus       203 k~G~~v~~lvG~~~  216 (228)
                      ++|+.+.+++|...
T Consensus        79 ~~G~~~~~~~G~~~   92 (105)
T d1nw2a_          79 KGGEPVKQLIGYQP   92 (105)
T ss_dssp             ETTEEEEEEESCCC
T ss_pred             ECCEEEEEEECCCC
Confidence            99999999999864

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.54  E-value=5.8e-15  Score=109.98  Aligned_cols=84  Identities=21%  Similarity=0.405  Sum_probs=75.1

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      +..||.++|.+.|.+++  .+|||+|    |++|+.|.+.+.+++.++. .++|++||++..   +..|+++++||+++|
T Consensus         3 ~~~i~~~~f~~~v~~s~--kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESS--VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCS--SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEecHHHHHHHHHhCC--CcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEE
Confidence            56789999999997654  6889888    9999999999999999985 789999999974   588999999999999


Q ss_pred             ECCEEEeEEeCccc
Q psy14385        203 FEGKMQSQMVGPDE  216 (228)
Q Consensus       203 k~G~~v~~lvG~~~  216 (228)
                      ++|+.+++++|...
T Consensus        81 ~~G~~v~~~~G~~~   94 (107)
T d1dbya_          81 KGGKKCETIIGAVP   94 (107)
T ss_dssp             SSSSEEEEEESCCC
T ss_pred             ECCeEEEEEeCCCC
Confidence            99999999999764

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=108.84  Aligned_cols=83  Identities=20%  Similarity=0.201  Sum_probs=71.5

Q ss_pred             EEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385        132 LEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFIY  202 (228)
Q Consensus       132 ~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllvY  202 (228)
                      ..| |..++.+.|..++ +..|||+|    |++|+.|.|.|++||.+|++ +.|++||+++.   +..|+++++||+++|
T Consensus         5 ~~l~s~~~~dq~i~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f   83 (137)
T d1qgva_           5 PHLHNGWQVDQAILSEE-DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF   83 (137)
T ss_dssp             CBCCSHHHHHHHHHTCS-SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred             cccCCHHHHHHHHHhCC-CCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEE
Confidence            355 6788888887654 57999999    99999999999999999986 89999999974   689999999999999


Q ss_pred             ECCEEEeEEeCcc
Q psy14385        203 FEGKMQSQMVGPD  215 (228)
Q Consensus       203 k~G~~v~~lvG~~  215 (228)
                      ++|+.+..-.|..
T Consensus        84 ~~g~~i~~~~g~~   96 (137)
T d1qgva_          84 FRNKHIMIDLGTG   96 (137)
T ss_dssp             ETTEEEEEECC--
T ss_pred             eCCcEEEEEecCC
Confidence            9999998777654

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.37  E-value=1.3e-13  Score=106.02  Aligned_cols=86  Identities=15%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC---CCCCCCCCCCcEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT---CIPNYPDKNLPTLFI  201 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~---~~~~y~v~~LPTllv  201 (228)
                      ...++..++...+..++ +..|++.|    ||+|+.|.+.|.+|+++|++  +.|++||.+.   .+.+|+++++||+++
T Consensus        13 ~~~v~~~~ld~~~~~~~-~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVG-DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             CEECCCC--------CC-SEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred             CceecccCHHHHHHhCC-CcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence            55778888887777664 46777777    99999999999999999986  6678999886   368999999999999


Q ss_pred             EECCEEEeEEeCcccc
Q psy14385        202 YFEGKMQSQMVGPDEF  217 (228)
Q Consensus       202 Yk~G~~v~~lvG~~~~  217 (228)
                      |++|+.++++.|....
T Consensus        92 ~~~G~~v~~~~G~~~~  107 (119)
T d2es7a1          92 FTDGKLRGALSGIHPW  107 (119)
T ss_dssp             ESCC----CEESCCCH
T ss_pred             EEcCeEEEEeeCCCCH
Confidence            9999999999998754

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.8e-13  Score=106.09  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=74.9

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC---CCCCCCCCCCcEEE
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT---CIPNYPDKNLPTLF  200 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~---~~~~y~v~~LPTll  200 (228)
                      ....++..+|...+.+++ +.+|+|.|    |++|+.|.++|.+||++|++  ++|++||++.   ....|++.++||++
T Consensus        18 g~~~~~~~~~d~~~~~~~-~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~   96 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_dssp             TCEEECHHHHHHHHHHCS-EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEE
T ss_pred             CCcccccccHHHHHHhCC-CcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEE
Confidence            345788899988887664 46778888    99999999999999999987  4678999876   46899999999999


Q ss_pred             EEECCEEEeEEeCcccc
Q psy14385        201 IYFEGKMQSQMVGPDEF  217 (228)
Q Consensus       201 vYk~G~~v~~lvG~~~~  217 (228)
                      +|++|+.++++.|....
T Consensus        97 ~~~~G~~v~~~~G~~~~  113 (132)
T d2hfda1          97 VFTGGNYRGVLNGIHPW  113 (132)
T ss_dssp             EEETTEEEEEECCCSCH
T ss_pred             EEEcCcEeeeecCCCCH
Confidence            99999999999998754

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=6.9e-12  Score=95.02  Aligned_cols=82  Identities=12%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKNLPT  198 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~LPT  198 (228)
                      -..|++++.++|.+.|.+.   ..|+|.|    |++|+.|.+.|+.||..+.  .++|++||+++.   +.+|++.++||
T Consensus         9 ~s~v~~lt~~~f~~~i~~~---~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt   85 (119)
T d2b5ea4           9 DSAVVKLATDSFNEYIQSH---DLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS   85 (119)
T ss_dssp             TSSCEECCTTTHHHHHTTC---SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCccEEcCHHHHHHHHhcC---CeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCe
Confidence            3468899999998776532   4677878    9999999999999999984  599999999874   57899999999


Q ss_pred             EEEEECCEEEeEEe
Q psy14385        199 LFIYFEGKMQSQMV  212 (228)
Q Consensus       199 llvYk~G~~v~~lv  212 (228)
                      |++|++|+....+.
T Consensus        86 i~~f~~g~~~~~~~   99 (119)
T d2b5ea4          86 LKIFKNSDVNNSID   99 (119)
T ss_dssp             EEEEETTCTTCEEE
T ss_pred             EEEEECCEEeeeEE
Confidence            99999998877654

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.7e-12  Score=97.50  Aligned_cols=74  Identities=18%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             ChhhHHHHHHhcCCCceEEEEe-----------ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC----------CCCCCC
Q psy14385        135 NGDTYVQEVNNAGEGIWVVLHF-----------IPLCSLINNHLSELAAKFP-TTKFIKSISTT----------CIPNYP  192 (228)
Q Consensus       135 s~edf~~eV~~a~~~~~VVVhf-----------~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~----------~~~~y~  192 (228)
                      +.++|.+.+.++ ++++|+|+|           |++|+.|.|.|.++|++|+ +++|++|+++.          ....|+
T Consensus         8 ~~~e~~~~l~~~-~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~   86 (119)
T d1woua_           8 GFEEFHRAVEQH-NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK   86 (119)
T ss_dssp             SHHHHHHHHHTT-TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHC
T ss_pred             CHHHHHHHHHHc-CCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCC
Confidence            778999999865 467899998           9999999999999999997 59999999854          235799


Q ss_pred             CCCCcEEEEEECCEEEe
Q psy14385        193 DKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       193 v~~LPTllvYk~G~~v~  209 (228)
                      ++++||+++|++|+.+.
T Consensus        87 V~~iPT~i~~~~g~~l~  103 (119)
T d1woua_          87 VTAVPTLLKYGTPQKLV  103 (119)
T ss_dssp             CCSSSEEEETTSSCEEE
T ss_pred             eEEEEEEEEEECCeEEe
Confidence            99999999999998554

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.21  E-value=1.5e-11  Score=90.83  Aligned_cols=78  Identities=17%  Similarity=0.163  Sum_probs=61.8

Q ss_pred             hHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHh----C-CCcEEEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385        138 TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAK----F-PTTKFIKSISTTC---IPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       138 df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~k----y-p~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G  205 (228)
                      +..+.+.+.++ ..+|+.|    |++|+.|.+.+.++|..    + ..+.|+++|+++.   +..|++.++||+++|++|
T Consensus         5 ~~~e~~~~~~~-~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G   83 (107)
T d1a8la2           5 ETKQAIRNIDQ-DVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNG   83 (107)
T ss_dssp             HHHHHHTTCCS-CEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETT
T ss_pred             HHHHHHHhcCC-CeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCC
Confidence            33444544443 3445556    99999999999999865    3 3589999999874   589999999999999999


Q ss_pred             EEEeEEeCccc
Q psy14385        206 KMQSQMVGPDE  216 (228)
Q Consensus       206 ~~v~~lvG~~~  216 (228)
                      +.+.+++|...
T Consensus        84 ~~~~~~~G~~~   94 (107)
T d1a8la2          84 EDRVEFEGAYP   94 (107)
T ss_dssp             EEEEEEESCCC
T ss_pred             eEEEEEECCCC
Confidence            99999999764

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.1e-12  Score=93.74  Aligned_cols=80  Identities=16%  Similarity=0.319  Sum_probs=67.8

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---CCCCCCCCCc
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---IPNYPDKNLP  197 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---~~~y~v~~LP  197 (228)
                      +.|..++.++|.+.+.+.   ..|+|+|    |++|+.|.+.+.+++.++.    .++|++||.+..   ..+|++.++|
T Consensus         7 ~~V~~l~~~~f~~~l~~~---k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   83 (120)
T d1meka_           7 DHVLVLRKSNFAEALAAH---KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP   83 (120)
T ss_dssp             TTEEECCTTTHHHHHHHC---SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred             CCeEEcCHHHHHHHHhcC---CcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCC
Confidence            468889999998877643   4788888    9999999999999999874    589999998874   4789999999


Q ss_pred             EEEEEECCEEEeEE
Q psy14385        198 TLFIYFEGKMQSQM  211 (228)
Q Consensus       198 TllvYk~G~~v~~l  211 (228)
                      ||++|++|+.+...
T Consensus        84 t~~~~~~G~~~~~~   97 (120)
T d1meka_          84 TIKFFRNGDTASPK   97 (120)
T ss_dssp             EEEEEESSCSSSCE
T ss_pred             eEEEEECCeEeeeE
Confidence            99999999876543

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=3e-11  Score=93.60  Aligned_cols=82  Identities=20%  Similarity=0.243  Sum_probs=69.6

Q ss_pred             CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCC-CCCCCCCCCCcE
Q psy14385        128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTT-CIPNYPDKNLPT  198 (228)
Q Consensus       128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~-~~~~y~v~~LPT  198 (228)
                      -+.|.+|++.+|.+.|.+.+  ..|+|.|    |++|+.|.+.|.+||..|.    .+.|+.+|.+. ....|++.++||
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~--k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~~~v~~~Pt   88 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPK--KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPT   88 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTT--CCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSE
T ss_pred             CCCcEEecCcCHHHHHhcCC--CCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccccccccCCe
Confidence            46799999999999997553  5677777    9999999999999999874    57888998765 468999999999


Q ss_pred             EEEEECCEEEeEE
Q psy14385        199 LFIYFEGKMQSQM  211 (228)
Q Consensus       199 llvYk~G~~v~~l  211 (228)
                      |++|++|+.+..+
T Consensus        89 l~~f~~g~~~~~~  101 (140)
T d2b5ea1          89 IVLYPGGKKSESV  101 (140)
T ss_dssp             EEEECCTTSCCCC
T ss_pred             EEEEECCEEccee
Confidence            9999999876654

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.14  E-value=2.3e-11  Score=90.65  Aligned_cols=79  Identities=20%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC------cEEEEEeCCCCCCCCCCCCCcE
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT------TKFIKSISTTCIPNYPDKNLPT  198 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~------~KFvkI~ad~~~~~y~v~~LPT  198 (228)
                      |.|..++.++|.+.|.+.+  .+|+|.|    |++|+.|.|.|++||..|..      ..+...+.......|++.++||
T Consensus         2 g~V~~lt~~nF~~~v~~~~--k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt   79 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDT--KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPT   79 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTT--SCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSE
T ss_pred             cCcEEcccCCHHHHHhcCC--CCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCE
Confidence            7899999999998886543  5677777    99999999999999999864      3455566666567899999999


Q ss_pred             EEEEECCEEEe
Q psy14385        199 LFIYFEGKMQS  209 (228)
Q Consensus       199 llvYk~G~~v~  209 (228)
                      |++|++|+...
T Consensus        80 i~~f~~g~~~~   90 (116)
T d2djja1          80 IKLYPAGAKGQ   90 (116)
T ss_dssp             EEEECSSCTTS
T ss_pred             EEEEECCccCc
Confidence            99999997543

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.12  E-value=1.6e-10  Score=84.86  Aligned_cols=74  Identities=16%  Similarity=0.226  Sum_probs=59.9

Q ss_pred             hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      +++.+.|.+... .+.|+.|    |++|+.+.+.|+++|..+++++|.++|++..   +..|+++++||+++  ||+.+.
T Consensus         4 ~~~~e~ik~l~~-~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~~   80 (96)
T d1hyua4           4 QSLLEQIRDIDG-DFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFG   80 (96)
T ss_dssp             HHHHHHHHHCCS-CEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEE
T ss_pred             HHHHHHHHhcCC-CeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhcccccccEEEE--CCEEEE
Confidence            567777876543 3444444    9999999999999999999999999999975   58899999999854  999873


Q ss_pred             EEeCcc
Q psy14385        210 QMVGPD  215 (228)
Q Consensus       210 ~lvG~~  215 (228)
                        +|..
T Consensus        81 --~G~~   84 (96)
T d1hyua4          81 --QGRM   84 (96)
T ss_dssp             --ESCC
T ss_pred             --ecCC
Confidence              4654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.08  E-value=8.8e-11  Score=88.22  Aligned_cols=84  Identities=13%  Similarity=0.153  Sum_probs=67.5

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC-------CCCCCCCCCCc
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT-------CIPNYPDKNLP  197 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~-------~~~~y~v~~LP  197 (228)
                      .+..++.+++.+.+.+.   ..|+|.|    |++|+.+.|.|.+++.++. .+.|+.++...       ...+|++.++|
T Consensus        10 ~~~~~t~~~~~~~i~~~---~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~P   86 (115)
T d1zmaa1          10 DLEVTTVVRAQEALDKK---ETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVP   86 (115)
T ss_dssp             TSEECCHHHHHHHHHTT---CCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             eeeeCCHHHHHHHHhcC---CCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccccccc
Confidence            45556778888777643   3677777    9999999999999999985 57787766433       24789999999


Q ss_pred             EEEEEECCEEEeEEeCccc
Q psy14385        198 TLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvYk~G~~v~~lvG~~~  216 (228)
                      |+++|++|+.+.++.|...
T Consensus        87 Tli~~~~gk~~~~~~G~~~  105 (115)
T d1zmaa1          87 GFVHITDGQINVRCDSSMS  105 (115)
T ss_dssp             EEEEEETTEEEEECCTTCC
T ss_pred             EEEEEECCEEEEEEcCCCC
Confidence            9999999999999998653

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.97  E-value=2.7e-10  Score=80.76  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=51.8

Q ss_pred             eEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCC---CCCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        151 WVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTT---CIPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       151 ~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~---~~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      ..|+.|    |++|+.|.+.+.+++..++. ++|+.++.++   .+.+|+++++||+++|++|+    ++|..
T Consensus         4 v~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~   72 (85)
T d1fo5a_           4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAP   72 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSS
T ss_pred             eEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCC
Confidence            456666    99999999999999999975 8999999886   46899999999999999885    45653

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.91  E-value=2.2e-09  Score=81.39  Aligned_cols=82  Identities=13%  Similarity=0.101  Sum_probs=65.7

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe----ccc------hHHHHHHHHHHHHhC--CCcEEEEEeCCCC---CCCCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPL------CSLINNHLSELAAKF--PTTKFIKSISTTC---IPNYPD  193 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~------C~~l~~~L~~LA~ky--p~~KFvkI~ad~~---~~~y~v  193 (228)
                      ..|++++.++|.+.|.+.   ..|+|+|    |+.      |..+.+.++.+|..+  ..++|++||+++.   ..+|++
T Consensus        11 ~~V~~L~~~nf~~~l~~~---~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I   87 (124)
T d1a8ya1          11 DRVINVNAKNYKNVFKKY---EVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL   87 (124)
T ss_dssp             CCCEECCTTTHHHHHHHC---SEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTC
T ss_pred             CccEECCHHHHHHHHHhC---CeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcccc
Confidence            458999999999888765   3677777    764      566778888888765  4599999999874   589999


Q ss_pred             CCCcEEEEEECCEEEeEEeCc
Q psy14385        194 KNLPTLFIYFEGKMQSQMVGP  214 (228)
Q Consensus       194 ~~LPTllvYk~G~~v~~lvG~  214 (228)
                      .+.|||++|++|+.+. +.|.
T Consensus        88 ~~yPTi~~f~~g~~~~-y~G~  107 (124)
T d1a8ya1          88 TEEDSIYVFKEDEVIE-YDGE  107 (124)
T ss_dssp             CSTTCEEEEESSSEEE-CCSC
T ss_pred             ccCCcEEEeccCccEE-eeCC
Confidence            9999999999998873 5553

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=4.1e-09  Score=78.31  Aligned_cols=84  Identities=18%  Similarity=0.258  Sum_probs=66.0

Q ss_pred             eEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHH---HHHHHhCCCcEEEEEeCCC-------CCCCCCCCC
Q psy14385        131 VLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHL---SELAAKFPTTKFIKSISTT-------CIPNYPDKN  195 (228)
Q Consensus       131 V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L---~~LA~kyp~~KFvkI~ad~-------~~~~y~v~~  195 (228)
                      ...| +.+++...+.++. +++|||.|    |++|+.|.+.+   .++++.+.+..++.++...       ....|++.+
T Consensus         4 f~~i~~~~~~~~~l~~~~-gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~   82 (117)
T d2fwha1           4 FTQIKTVDELNQALVEAK-GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG   82 (117)
T ss_dssp             CEECCSHHHHHHHHHHHT-TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCS
T ss_pred             ceEecCHHHHHHHHHHcC-CCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhh
Confidence            4556 5577777777663 67999999    99999999998   6677778888888888654       247799999


Q ss_pred             CcEEEEE-ECCEEEe--EEeCcc
Q psy14385        196 LPTLFIY-FEGKMQS--QMVGPD  215 (228)
Q Consensus       196 LPTllvY-k~G~~v~--~lvG~~  215 (228)
                      +||+++| .+|+.+.  +++|..
T Consensus        83 ~Pt~~~~~~~G~~~~~~~~~G~~  105 (117)
T d2fwha1          83 LPTILFFDGQGQEHPQARVTGFM  105 (117)
T ss_dssp             SSEEEEECTTSCBCGGGCBCSCC
T ss_pred             ceEEEEEeCCCcEEecccccccC
Confidence            9999999 5788764  567763

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.77  E-value=2.3e-09  Score=76.38  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=49.0

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |++++   |++|+.+.+.|+++|.+|+ .+.|+++|+++.   +.+|+++++||++++..|    +++|..
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~~----~~~G~~   71 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVV----RFVGAP   71 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEETTTE----EEECSS
T ss_pred             EEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEECCcE----EEEcCC
Confidence            44455   9999999999999999996 499999999974   689999999998874433    456653

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.62  E-value=3.6e-08  Score=74.48  Aligned_cols=79  Identities=10%  Similarity=0.140  Sum_probs=61.8

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHh----CCCcEEEEEeCCCC--------CCCCCC
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAK----FPTTKFIKSISTTC--------IPNYPD  193 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~k----yp~~KFvkI~ad~~--------~~~y~v  193 (228)
                      .+++++..+|.+.|.+.   ..|+|.|    |++|+  .+.+.++|++    .+++.|++|+.++.        +..|++
T Consensus         3 g~v~L~~~nFd~~v~~~---~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i   77 (122)
T d2c0ga2           3 GCVDLDELSFEKTVERF---PYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV   77 (122)
T ss_dssp             TCEECCTTTHHHHHTTS---SEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC
T ss_pred             ceEEcChHhHHHHHhcC---CcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhc
Confidence            47799999998877543   5899998    99999  5888888876    46799999998642        355766


Q ss_pred             --CCCcEEEEEECCEEEeEEeC
Q psy14385        194 --KNLPTLFIYFEGKMQSQMVG  213 (228)
Q Consensus       194 --~~LPTllvYk~G~~v~~lvG  213 (228)
                        +++||+++|++|......++
T Consensus        78 ~~~~~PTi~~f~~g~~~~~~~~   99 (122)
T d2c0ga2          78 DDKNFPSIFLFKGNADEYVQLP   99 (122)
T ss_dssp             CTTSCCEEEEESSSSSSEEECC
T ss_pred             ccCCCCcEEEEeCCcccccccc
Confidence              68999999999976655444

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=8.6e-07  Score=67.05  Aligned_cols=67  Identities=16%  Similarity=0.089  Sum_probs=51.3

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC------------------------CCCCCCCCCCcEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT------------------------CIPNYPDKNLPTLF  200 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~------------------------~~~~y~v~~LPTll  200 (228)
                      |++|||+|    |++|+...|+|.+++.++..+-++..+.+.                        ....|++.++||.+
T Consensus        20 Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~   99 (136)
T d1z5ye1          20 GKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETF   99 (136)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBSEEE
T ss_pred             CCEEEEEEEcCcCCCcCccccchhhhhhhhhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCcceEE
Confidence            46899999    999999999999999876554444443331                        01447899999776


Q ss_pred             EE-ECCEEEeEEeCcc
Q psy14385        201 IY-FEGKMQSQMVGPD  215 (228)
Q Consensus       201 vY-k~G~~v~~lvG~~  215 (228)
                      ++ ++|+++.+.+|..
T Consensus       100 liD~~G~i~~~~~G~~  115 (136)
T d1z5ye1         100 LIDGNGIIRYRHAGDL  115 (136)
T ss_dssp             EECTTSCEEEEEESCC
T ss_pred             EEcCCCEEEEEEEcCC
Confidence            66 8899999999964

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=5.9e-06  Score=62.32  Aligned_cols=60  Identities=27%  Similarity=0.418  Sum_probs=50.5

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------------------------CCCCCCCCCcEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------------------------IPNYPDKNLPTL  199 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------------------------~~~y~v~~LPTl  199 (228)
                      |++|||.|    |++|+...+.|.+++++++++.|+-|+.+.-                         ...|++.++|++
T Consensus        24 Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~  103 (134)
T d1lu4a_          24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAF  103 (134)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCEE
Confidence            46788877    9999999999999999999999999987630                         145899999999


Q ss_pred             EEE-ECCEEE
Q psy14385        200 FIY-FEGKMQ  208 (228)
Q Consensus       200 lvY-k~G~~v  208 (228)
                      +++ ++|+..
T Consensus       104 ~lid~~G~i~  113 (134)
T d1lu4a_         104 VFYRADGTST  113 (134)
T ss_dssp             EEECTTSCEE
T ss_pred             EEEeCCCeEE
Confidence            999 578754

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.91  E-value=7.8e-06  Score=62.12  Aligned_cols=68  Identities=18%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             CCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCc
Q psy14385        148 EGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLP  197 (228)
Q Consensus       148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LP  197 (228)
                      +|++|||+|    |++|+...+.+..+..++. .+++-|..+.                          ....|++.++|
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  108 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR-FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP  108 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT-SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC-ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccc
Confidence            357899988    9999999999999988875 4544444321                          12458899999


Q ss_pred             EEEEE-ECCEEEeEEeCccc
Q psy14385        198 TLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       198 TllvY-k~G~~v~~lvG~~~  216 (228)
                      |++++ ++|+++.+.+|...
T Consensus       109 ~~~liD~~G~i~~~~~G~~~  128 (144)
T d1knga_         109 ETFVVGREGTIVYKLVGPIT  128 (144)
T ss_dssp             EEEEECTTSBEEEEEESCCC
T ss_pred             eEEEEcCCCeEEEEEeCCCC
Confidence            88888 68999999999764

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=1.9e-05  Score=59.00  Aligned_cols=65  Identities=22%  Similarity=0.309  Sum_probs=52.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------------------------CCCCCCCCCcE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------------------------IPNYPDKNLPT  198 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------------------------~~~y~v~~LPT  198 (228)
                      |++|||+|    |++|+.-.+.|.+++++|++..|+-|+..+.                          ...|++.++|+
T Consensus        25 Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~  104 (134)
T d1zzoa1          25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPA  104 (134)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSE
T ss_pred             CCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccCe
Confidence            46788888    9999999999999999999999988877530                          14588999999


Q ss_pred             EEEE-ECCEEEeEEeCc
Q psy14385        199 LFIY-FEGKMQSQMVGP  214 (228)
Q Consensus       199 llvY-k~G~~v~~lvG~  214 (228)
                      ++++ ++|++. ...|.
T Consensus       105 ~~iiD~~G~i~-~~~g~  120 (134)
T d1zzoa1         105 YAFVDPHGNVD-VVRGR  120 (134)
T ss_dssp             EEEECTTCCEE-EEESC
T ss_pred             EEEECCCCeEE-EEECC
Confidence            9999 578754 45554

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.1e-05  Score=60.74  Aligned_cols=90  Identities=10%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             cCCCceEE-eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC---CCcEEEEEeCCCC----CCCCCC
Q psy14385        126 SRFGRVLE-INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF---PTTKFIKSISTTC----IPNYPD  193 (228)
Q Consensus       126 ~~fG~V~e-Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky---p~~KFvkI~ad~~----~~~y~v  193 (228)
                      .+||.-+. -+-++-+..-...  +++|+|+|    |++|+.|.+.+.+++..+   .+.-++++|.+.-    ...+..
T Consensus         3 ~~~~~~i~w~~~~~al~~A~~~--~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~   80 (135)
T d1sena_           3 KGFGDHIHWRTLEDGKKEAAAS--GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDG   80 (135)
T ss_dssp             TTSCTTSCBCCHHHHHHHHHHH--TCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTC
T ss_pred             CCCCCceeeeEHHHHHHHHHHc--CCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhc
Confidence            35664333 2333333333333  46899999    999999999987766543   3566677776542    123455


Q ss_pred             CCCcEEEEE-ECCEEEeEEeCcccc
Q psy14385        194 KNLPTLFIY-FEGKMQSQMVGPDEF  217 (228)
Q Consensus       194 ~~LPTllvY-k~G~~v~~lvG~~~~  217 (228)
                      ..+||++++ .+|+.+..+.|....
T Consensus        81 ~~~Pt~~~~d~~G~~~~~~~g~~~~  105 (135)
T d1sena_          81 GYIPRILFLDPSGKVHPEIINENGN  105 (135)
T ss_dssp             SCSSEEEEECTTSCBCTTCCCTTSC
T ss_pred             ccceeEEEECCCCeEEEEecCCCCC
Confidence            678999999 479999888886543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=97.81  E-value=2.6e-05  Score=58.66  Aligned_cols=69  Identities=16%  Similarity=0.199  Sum_probs=55.4

Q ss_pred             CCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------------CCC
Q psy14385        148 EGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------------IPN  190 (228)
Q Consensus       148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------------~~~  190 (228)
                      ++++|||+|    |++|+...+.|.++.+++.  ++.++-+.....                               ...
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  101 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQS  101 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHHH
Confidence            357888888    9999999999999999874  577777764310                               135


Q ss_pred             CCCCCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        191 YPDKNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       191 y~v~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      |++.++|+++++ ++|+++....|...
T Consensus       102 ~~v~~~P~~~liD~~G~i~~~~~G~~~  128 (143)
T d2fy6a1         102 LNISVYPSWALIGKDGDVQRIVKGSIN  128 (143)
T ss_dssp             TTCCSSSEEEEECTTSCEEEEEESCCC
T ss_pred             cCCCccCEEEEECCCCEEEEEEECCCC
Confidence            778999999999 99999999999753

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=97.78  E-value=1.5e-05  Score=60.87  Aligned_cols=62  Identities=21%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---------------------------CCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---------------------------IPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---------------------------~~~y~v~  194 (228)
                      |++|||+|    |++|+...+.|.+++++|.   ++.++-|..+..                           ...|++.
T Consensus        28 GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v~  107 (144)
T d1o73a_          28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE  107 (144)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred             CCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCCC
Confidence            57899999    9999999999999999984   477788776631                           1347899


Q ss_pred             CCcEEEEEE-C-CEEEeE
Q psy14385        195 NLPTLFIYF-E-GKMQSQ  210 (228)
Q Consensus       195 ~LPTllvYk-~-G~~v~~  210 (228)
                      ++||++++. + |.++..
T Consensus       108 ~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         108 SIPTLITINADTGAIIGT  125 (144)
T ss_dssp             SSSEEEEEETTTCCEEES
T ss_pred             cCCEEEEEECCCCEEEee
Confidence            999999997 5 777764

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=97.78  E-value=2.5e-05  Score=59.27  Aligned_cols=68  Identities=13%  Similarity=0.340  Sum_probs=54.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC------------------------------CCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC------------------------------IPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~------------------------------~~~y~v  193 (228)
                      +++|||+|    |++|....+.|.+|.++|. .+.|+-|+.+..                              ...|++
T Consensus        29 ~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v  108 (143)
T d2b5xa1          29 EKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFEN  108 (143)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCC
T ss_pred             CCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHcCC
Confidence            36788887    9999999999999999996 489988865310                              134788


Q ss_pred             CCCcEEEEE-ECCEEEeEEeCccc
Q psy14385        194 KNLPTLFIY-FEGKMQSQMVGPDE  216 (228)
Q Consensus       194 ~~LPTllvY-k~G~~v~~lvG~~~  216 (228)
                      .++||++++ ++|+++...+|...
T Consensus       109 ~~~P~~~~id~~G~i~~~~~G~~~  132 (143)
T d2b5xa1         109 EYVPAYYVFDKTGQLRHFQAGGSG  132 (143)
T ss_dssp             CCSSEEEEECTTCBEEEEEESCST
T ss_pred             CcCCEEEEECCCCEEEEEEECCCC
Confidence            999987777 89999999999654

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=5.3e-05  Score=56.37  Aligned_cols=81  Identities=11%  Similarity=0.222  Sum_probs=55.6

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC---cEEEEEeCCCC--------C--CCCC
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT---TKFIKSISTTC--------I--PNYP  192 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~---~KFvkI~ad~~--------~--~~y~  192 (228)
                      .+++++.++|.+.|.+.   ..|+|.|    |..|.  .+.+.++|+.+-.   ....+|....+        .  ..+.
T Consensus         5 ~~v~L~~~nFd~~i~~~---~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~   79 (122)
T d1g7ea_           5 GALPLDTVTFYKVIPKS---KFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   79 (122)
T ss_dssp             SSCSCSHHHHHHHGGGS---SEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCS
T ss_pred             ceEECCHHhHHHHHhhC---CeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccc
Confidence            47899999998777543   5788888    66664  5888999988742   33335544331        1  2467


Q ss_pred             CCCCcEEEEEECCEEEe--EEeCcc
Q psy14385        193 DKNLPTLFIYFEGKMQS--QMVGPD  215 (228)
Q Consensus       193 v~~LPTllvYk~G~~v~--~lvG~~  215 (228)
                      +.+.|||++|++|....  .+.|..
T Consensus        80 I~~yPTi~~f~~G~~~~~~~y~G~r  104 (122)
T d1g7ea_          80 KESYPVFYLFRDGDFENPVPYSGAV  104 (122)
T ss_dssp             SSSCEEEEEEESSCCCCCEEEESCC
T ss_pred             ccCCCeEEEEecCcccCceecCCCC
Confidence            89999999999997543  345543

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.73  E-value=2.5e-05  Score=58.59  Aligned_cols=67  Identities=22%  Similarity=0.296  Sum_probs=54.4

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------CCCCCCCCCc
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------IPNYPDKNLP  197 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------~~~y~v~~LP  197 (228)
                      +.++||.|    |++|....+.|.++.++|+  ++.|+-|+.+..                         ...|++.++|
T Consensus        25 gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  104 (137)
T d1st9a_          25 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP  104 (137)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSSC
T ss_pred             CCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccccc
Confidence            35778877    9999999999999999986  478888775420                         1458899999


Q ss_pred             EEEEE-ECCEEEeEEeCcc
Q psy14385        198 TLFIY-FEGKMQSQMVGPD  215 (228)
Q Consensus       198 TllvY-k~G~~v~~lvG~~  215 (228)
                      +++++ ++|+++..+.|..
T Consensus       105 ~~~liD~~G~i~~~~~G~~  123 (137)
T d1st9a_         105 TTFLINPEGKVVKVVTGTM  123 (137)
T ss_dssp             EEEEECTTSEEEEEEESCC
T ss_pred             eEEEECCCCEEEEEEECCC
Confidence            87777 7899999999965

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=4.1e-06  Score=61.28  Aligned_cols=56  Identities=18%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ  208 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v  208 (228)
                      ..++|+.|    |++|+.+.+.|++++..|+ .+++++|.+..   ...|.++ +|+|++  ||+.+
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~   77 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL   77 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEecccccCHHHHHHhccc-CCceee--cCceE
Confidence            35788888    9999999999999999998 58888888764   5789987 998765  88776

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.65  E-value=4.3e-05  Score=58.57  Aligned_cols=62  Identities=16%  Similarity=0.208  Sum_probs=48.3

Q ss_pred             CCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---------------------------CCCCCC
Q psy14385        148 EGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---------------------------IPNYPD  193 (228)
Q Consensus       148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---------------------------~~~y~v  193 (228)
                      +|++|+|+|    |++|+...+.|.++.++|.   .+.++-|..+.-                           ...|++
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            357999999    9999999999999999885   356677766530                           134899


Q ss_pred             CCCcEEEEEE-C-CEEEe
Q psy14385        194 KNLPTLFIYF-E-GKMQS  209 (228)
Q Consensus       194 ~~LPTllvYk-~-G~~v~  209 (228)
                      .++||++++. + |+++.
T Consensus       107 ~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         107 KSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCcCEEEEEeCCCCEEEe
Confidence            9999988885 4 77764

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.58  E-value=6.3e-05  Score=56.55  Aligned_cols=61  Identities=20%  Similarity=0.244  Sum_probs=48.7

Q ss_pred             CceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---------------------------CCCCCCC
Q psy14385        149 GIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---------------------------IPNYPDK  194 (228)
Q Consensus       149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---------------------------~~~y~v~  194 (228)
                      |++|||+|    |++|+...+.|.+++++|.   .+.++-|..+.-                           ...|++.
T Consensus        26 GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~  105 (144)
T d1o8xa_          26 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE  105 (144)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred             CCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCCC
Confidence            57899999    9999999999999999984   366777766530                           1358999


Q ss_pred             CCcEEEEEE-C-CEEEe
Q psy14385        195 NLPTLFIYF-E-GKMQS  209 (228)
Q Consensus       195 ~LPTllvYk-~-G~~v~  209 (228)
                      ++||++++. + |+++.
T Consensus       106 ~~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_         106 SIPTLIGVDADSGDVVT  122 (144)
T ss_dssp             SSSEEEEEETTTCCEEE
T ss_pred             cCCEEEEEeCCCCEEEE
Confidence            999999997 5 66654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.41  E-value=0.00025  Score=55.12  Aligned_cols=77  Identities=12%  Similarity=0.137  Sum_probs=55.7

Q ss_pred             hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCC---CCCCCcEEEEEEC-C
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNY---PDKNLPTLFIYFE-G  205 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y---~v~~LPTllvYk~-G  205 (228)
                      ++....+..- ++.++|+.|    |++|+...|.|..++.+||++.|.-|+.+..   ...|   .....|+++++.+ +
T Consensus        43 ~~~~~~l~~~-~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~  121 (166)
T d1z6na1          43 SALTERLQRI-ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEF  121 (166)
T ss_dssp             HHHHHHHHTC-CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTC
T ss_pred             HHHHHHHHHh-cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhccccccceeecCccc
Confidence            3445455543 345666667    9999999999999999999999998887753   3555   4557788877744 5


Q ss_pred             EEEeEEeCc
Q psy14385        206 KMQSQMVGP  214 (228)
Q Consensus       206 ~~v~~lvG~  214 (228)
                      .....+++.
T Consensus       122 ~~~~~~~~~  130 (166)
T d1z6na1         122 NLLGRFVER  130 (166)
T ss_dssp             CEEEEEESS
T ss_pred             hhccccccc
Confidence            666676654

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.27  E-value=0.00043  Score=53.84  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=53.0

Q ss_pred             CCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC--CC-----------C------------------CC
Q psy14385        148 EGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST--TC-----------I------------------PN  190 (228)
Q Consensus       148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad--~~-----------~------------------~~  190 (228)
                      ++++|||+|    |+.|+...+.|..+..+|.  ...++-+..+  ..           .                  ..
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            356888888    9999999999999999884  4555555433  10           0                  23


Q ss_pred             CCCCCCcEEEEE-ECCEEEeEEeCcccc
Q psy14385        191 YPDKNLPTLFIY-FEGKMQSQMVGPDEF  217 (228)
Q Consensus       191 y~v~~LPTllvY-k~G~~v~~lvG~~~~  217 (228)
                      |.+.++|+++++ ++|+++.+++|...+
T Consensus       135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~  162 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCEIATIAGPAEW  162 (176)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCT
T ss_pred             ccCCCCCeEEEEcCCCEEEEEEECCCCC
Confidence            567789998888 789999999997654

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00011  Score=57.07  Aligned_cols=78  Identities=12%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             hhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHH---HHHHHhC-CCcEEEEEeCCC-----CCCCCCCCCCcEEEE
Q psy14385        136 GDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHL---SELAAKF-PTTKFIKSISTT-----CIPNYPDKNLPTLFI  201 (228)
Q Consensus       136 ~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L---~~LA~ky-p~~KFvkI~ad~-----~~~~y~v~~LPTllv  201 (228)
                      ..+|...+..+. .+++|+|.|    |+.|+.|++..   ..++.-+ .+.-|++++++.     ....|++.++||+++
T Consensus        28 ~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~  107 (147)
T d2dlxa1          28 KGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSI  107 (147)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEE
T ss_pred             cCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEE
Confidence            445555554331 247999999    99999997733   2333222 245677888765     257899999999999


Q ss_pred             E--ECCEEEeEEeC
Q psy14385        202 Y--FEGKMQSQMVG  213 (228)
Q Consensus       202 Y--k~G~~v~~lvG  213 (228)
                      +  ++|+.+..+-|
T Consensus       108 idp~~ge~v~~~~~  121 (147)
T d2dlxa1         108 LDPRTGQKLVEWHQ  121 (147)
T ss_dssp             ECTTTCCCCEEESS
T ss_pred             EeCCCCeEecccCC
Confidence            9  47988866544

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00045  Score=55.06  Aligned_cols=63  Identities=16%  Similarity=0.271  Sum_probs=49.6

Q ss_pred             CCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC--------------------------------CCCC
Q psy14385        148 EGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT--------------------------------CIPN  190 (228)
Q Consensus       148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~--------------------------------~~~~  190 (228)
                      ++++|||.|    |++|+...+.|.+|+++|. ++.|+-|++..                                ....
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            356888888    9999999999999999996 47888887521                                0145


Q ss_pred             CCCCCCcEEEEEEC-CEEEeE
Q psy14385        191 YPDKNLPTLFIYFE-GKMQSQ  210 (228)
Q Consensus       191 y~v~~LPTllvYk~-G~~v~~  210 (228)
                      |++..+|+++++.. |+++.+
T Consensus       111 ~~v~~~P~~~liD~~G~i~y~  131 (187)
T d2cvba1         111 YRALRTPEVFLFDERRLLRYH  131 (187)
T ss_dssp             TTCCEESEEEEECTTCBEEEE
T ss_pred             ccccceeeEEEEcCCCeEEEE
Confidence            89999998888865 777643

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.39  E-value=0.0035  Score=47.02  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=49.7

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-----CCCCCCCCCCcEEEEEECCEEEe-EEeCccccC
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTT-----CIPNYPDKNLPTLFIYFEGKMQS-QMVGPDEFR  218 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-----~~~~y~v~~LPTllvYk~G~~v~-~lvG~~~~G  218 (228)
                      |+.|..|.+.|+.+|.--+.+++...+.+.     ..+.|++...||+.++.+|+-.+ +|.| .+.|
T Consensus        35 ~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~G-iP~G  101 (119)
T d1a8la1          35 CQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFG-LPAG  101 (119)
T ss_dssp             CTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEES-CCCT
T ss_pred             chhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEe-ccCc
Confidence            899999999999999999998887766654     35789999999999999997643 5666 3444

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.17  E-value=0.0054  Score=44.27  Aligned_cols=68  Identities=21%  Similarity=0.312  Sum_probs=50.6

Q ss_pred             hhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------CCCCCCCCCcEEEEEECC
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------IPNYPDKNLPTLFIYFEG  205 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------~~~y~v~~LPTllvYk~G  205 (228)
                      +.|++...+.+   .|||+-   ||.|......|..+..+|+.+.|..++...-        ....+.+.+|.++  -+|
T Consensus         2 ~~~v~~~i~~~---~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIf--i~g   76 (105)
T d1ktea_           2 QAFVNSKIQPG---KVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGK   76 (105)
T ss_dssp             HHHHHHHCCTT---CEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETT
T ss_pred             hhHHHHHhccC---CEEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEE--ECC
Confidence            45666665543   466666   9999999999999998899899998886642        1234667899875  599


Q ss_pred             EEEe
Q psy14385        206 KMQS  209 (228)
Q Consensus       206 ~~v~  209 (228)
                      +.++
T Consensus        77 ~~IG   80 (105)
T d1ktea_          77 ECIG   80 (105)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8765

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=95.02  E-value=0.078  Score=38.83  Aligned_cols=71  Identities=20%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             eEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCC--CCCcEEEE
Q psy14385        131 VLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPD--KNLPTLFI  201 (228)
Q Consensus       131 V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v--~~LPTllv  201 (228)
                      |.+++.+++..... .+  .+.++.|   ......+...|..+|++|. .+.|+.+|+++.   ...|++  ..+|++++
T Consensus         8 v~e~~~~n~~~~~~-~~--~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i   84 (133)
T d2djka1           8 IGEIGPETYSDYMS-AG--IPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAI   84 (133)
T ss_dssp             SEECCHHHHHHHHH-TT--SCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEE
T ss_pred             eeccChhhHHHHhc-CC--CCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEE
Confidence            56788888887665 32  4566666   5678899999999999995 599999998874   355665  67899998


Q ss_pred             EEC
Q psy14385        202 YFE  204 (228)
Q Consensus       202 Yk~  204 (228)
                      +..
T Consensus        85 ~~~   87 (133)
T d2djka1          85 QEV   87 (133)
T ss_dssp             ECT
T ss_pred             EEc
Confidence            754

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.019  Score=39.51  Aligned_cols=56  Identities=11%  Similarity=0.182  Sum_probs=43.1

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC---------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |||+=   ||.|......|.++...|..+.|..++.+.-         ....+.+.+|.+  |-+|+.++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqI--fi~g~~IG   70 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG   70 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEE--EECCEEEE
Confidence            45554   9999999999999999999999998875431         123456789996  45998775

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.43  E-value=0.026  Score=42.23  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------CCCCCC----
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------IPNYPD----  193 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------~~~y~v----  193 (228)
                      +++|||.|     |+.|....+.|.+++.+|.  .+.++-+..+..                        ...|++    
T Consensus        30 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  109 (160)
T d2cx4a1          30 GRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHED  109 (160)
T ss_dssp             SSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEEEE
T ss_pred             CCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccccc
Confidence            35777776     9999999999999988885  467777766530                        123444    


Q ss_pred             ------CCCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        194 ------KNLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       194 ------~~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                            ...|+.++. ++|.++...++....+
T Consensus       110 ~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~  141 (160)
T d2cx4a1         110 LKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLN  141 (160)
T ss_dssp             ETTEEEEECCEEEEECTTSBEEEEEECSSTTC
T ss_pred             cccccccceeeEEEEcCCCEEEEEEEeCCCCC
Confidence                  235766555 8999999998876554

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.24  E-value=0.037  Score=42.22  Aligned_cols=71  Identities=15%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             CCceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC----------------------------CCCCC
Q psy14385        148 EGIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC----------------------------IPNYP  192 (228)
Q Consensus       148 ~~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~----------------------------~~~y~  192 (228)
                      +|+|||++|     ||.|..-.+.|.++..+|.  ++.++-|..+..                            +..|+
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            357899988     9999999999999999984  588888877630                            12344


Q ss_pred             C-----CCCcEEEEE-ECCEEEeEEeCccccC
Q psy14385        193 D-----KNLPTLFIY-FEGKMQSQMVGPDEFR  218 (228)
Q Consensus       193 v-----~~LPTllvY-k~G~~v~~lvG~~~~G  218 (228)
                      +     ...|+.++. .+|.+....++....+
T Consensus       123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~  154 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVG  154 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCC
T ss_pred             CCccCCccceeEEEEcCCCEEEEEEEcCCCCC
Confidence            4     567887777 5899988887665544

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.059  Score=40.72  Aligned_cols=67  Identities=16%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             ceEEEEe-----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC------------------------CCCCCCCCCc--
Q psy14385        150 IWVVLHF-----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC------------------------IPNYPDKNLP--  197 (228)
Q Consensus       150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~------------------------~~~y~v~~LP--  197 (228)
                      .+||++|     |+.|....+.|..+..+|. ...++-|..+..                        ...|++...|  
T Consensus        34 ~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~~  113 (156)
T d2a4va1          34 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS  113 (156)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             cEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCccccC
Confidence            5777776     9999999999999999985 356777766630                        1236555555  


Q ss_pred             ----EEEEEECCEEEeEEeCccc
Q psy14385        198 ----TLFIYFEGKMQSQMVGPDE  216 (228)
Q Consensus       198 ----TllvYk~G~~v~~lvG~~~  216 (228)
                          |.+|..+|+.+.+.+|...
T Consensus       114 ~~~r~~~i~~dg~i~~~~~~~~~  136 (156)
T d2a4va1         114 GSIRSHFIFVDGKLKFKRVKISP  136 (156)
T ss_dssp             CBCCEEEEEETTEEEEEEESCCH
T ss_pred             CeeEEEEEEECCeEEEEEEEeCC
Confidence                5667799999999988653

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.22  Score=35.48  Aligned_cols=73  Identities=10%  Similarity=0.053  Sum_probs=51.5

Q ss_pred             eEEeCh-hhHHHHHHhcCCCceEEEEe-ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCEE
Q psy14385        131 VLEING-DTYVQEVNNAGEGIWVVLHF-IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKM  207 (228)
Q Consensus       131 V~eIs~-edf~~eV~~a~~~~~VVVhf-~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~  207 (228)
                      ...|+. ++...-+. .+  ..|||=| -..-......+..+|..+.+..|.-.........|++.. |+|++||....
T Consensus         2 a~~l~~~~~~e~f~~-~~--~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~~-~~Ivl~k~~de   76 (110)
T d1bjxa_           2 ATTLPDGAAAESLVE-SS--EVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDK-DGVVLFKKFDE   76 (110)
T ss_dssp             EEECCSHHHHHHHHH-HS--SEEEEEECTTTTSHHHHHHHHHHHHCSSSCEEEECCSHHHHHTTCSS-CEEEEEESSSS
T ss_pred             ceEcCCHHHHHHHhc-cC--CeEEEEEEcCCCchHHHHHHHHHHhCcCceEEEECCHHHHHHcCCCC-CeEEEeccCCc
Confidence            345643 44444444 43  3566655 445566778899999999999998877777778888865 99999998653

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=91.33  E-value=0.14  Score=38.93  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad  185 (228)
                      |++||+.|     |+.|..-.+.|.+++.++.++.|+-|..+
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d   85 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISAD   85 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcC
Confidence            45777766     99999999999999999999999988766

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.32  E-value=0.69  Score=34.89  Aligned_cols=31  Identities=10%  Similarity=0.070  Sum_probs=22.8

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEE
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKS  182 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI  182 (228)
                      .|++++   ||.|+.+.+.+..|..++. ++|+-+
T Consensus        39 tv~vF~D~~CP~C~~~~~~l~~l~~~~~-v~v~~~   72 (169)
T d1v58a1          39 IVYVFADPFCPYCKQFWQQARPWVDSGK-VQLRTL   72 (169)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHhccc-eeEEEE
Confidence            455555   9999999999999987763 544433

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.27  E-value=0.25  Score=36.06  Aligned_cols=69  Identities=20%  Similarity=0.172  Sum_probs=50.0

Q ss_pred             EeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCC-CCCcEEEEEEC
Q psy14385        133 EINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPD-KNLPTLFIYFE  204 (228)
Q Consensus       133 eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v-~~LPTllvYk~  204 (228)
                      +|+.++|..-+...   .++++.|   ...-..+...+..+|++|.+ +.|+-+|+++.   ...|+. ..+|.+.+...
T Consensus         4 ei~~~~~~~y~~~~---~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~   80 (125)
T d2b5ea3           4 EIDGSVFAQYVESG---LPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDM   80 (125)
T ss_dssp             BCCHHHHHHHHHTT---SCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEET
T ss_pred             ccCHHHHHHHHhcC---CCEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEec
Confidence            56788888877532   5666666   44556789999999999964 99999998763   233443 35899988764

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.09  E-value=0.37  Score=39.29  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=53.6

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC------------------------------CCCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT------------------------------CIPNY  191 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~------------------------------~~~~y  191 (228)
                      |.|||++|     |+.|..-...|.+++.+|.  +++.+-|.++.                              .+..|
T Consensus        29 Gk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~y  108 (237)
T d2zcta1          29 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRL  108 (237)
T ss_dssp             TCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHHT
T ss_pred             CCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHHc
Confidence            46999988     9999998888888888884  67888776552                              01335


Q ss_pred             CC-------CCCcEEEEE-ECCEEEeEEeCccccCCC
Q psy14385        192 PD-------KNLPTLFIY-FEGKMQSQMVGPDEFRTN  220 (228)
Q Consensus       192 ~v-------~~LPTllvY-k~G~~v~~lvG~~~~G~~  220 (228)
                      ++       ..+|+++|. .+|.+...+++....|++
T Consensus       109 Gv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~  145 (237)
T d2zcta1         109 GLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRL  145 (237)
T ss_dssp             TCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCC
T ss_pred             CCccccccccceeeeEEECCCCEEEEEEEeCCCCCCC
Confidence            55       467877777 789988888887777743

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=88.85  E-value=0.19  Score=32.92  Aligned_cols=46  Identities=11%  Similarity=0.070  Sum_probs=34.1

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+.|..+...|++.     ++.|..++.+.-      ...++.+.+|+++  .+|+.++
T Consensus        11 C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~g~~ig   62 (74)
T d1r7ha_          11 CVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGEHWS   62 (74)
T ss_dssp             CHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTEEEE
T ss_pred             ChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence            99999999999763     566777777652      2556889999864  5887553

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=88.35  E-value=0.33  Score=36.91  Aligned_cols=71  Identities=17%  Similarity=0.261  Sum_probs=52.0

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC----------------------------CCCCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC----------------------------IPNYPD  193 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~----------------------------~~~y~v  193 (228)
                      |++||+.|     |+.|..-.+.|.++..+|.  ++.++-|..+..                            +..|++
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv  110 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV  110 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhCC
Confidence            56888888     9999999999999999994  688888877641                            123544


Q ss_pred             C----CCc---EEEEEECCEEEeEEeCccccCC
Q psy14385        194 K----NLP---TLFIYFEGKMQSQMVGPDEFRT  219 (228)
Q Consensus       194 ~----~LP---TllvYk~G~~v~~lvG~~~~G~  219 (228)
                      .    ++|   |++|=++|.+....++....|.
T Consensus       111 ~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r  143 (166)
T d1we0a1         111 LNEETGLADRGTFIIDPDGVIQAIEINADGIGR  143 (166)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTSCC
T ss_pred             CccccCcccceEEEECCCCcEEEEEEcCCCCCC
Confidence            2    222   5666677999888888776663

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.30  E-value=0.25  Score=35.30  Aligned_cols=71  Identities=21%  Similarity=0.228  Sum_probs=47.4

Q ss_pred             EeChhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCCCCCCCCcEEEEEEC
Q psy14385        133 EINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIPNYPDKNLPTLFIYFE  204 (228)
Q Consensus       133 eIs~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~~y~v~~LPTllvYk~  204 (228)
                      .|+...-++...+...+..||-+|-..-......+..+|..+ +++.|.-.........|++. .|++++||.
T Consensus         3 ~i~~~~e~~~F~~~~d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t~d~~va~~~~v~-~~~vvlfr~   74 (102)
T d1a8ya2           3 LIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTLK-LNEIDFYEA   74 (102)
T ss_dssp             EECSHHHHHHHTTCCSSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEECCHHHHHHHCCC-TTCEEEECT
T ss_pred             eecCHHHHHHHhccCCCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEECCHHHHHHcCCC-CCCEEEeee
Confidence            454444344443322234444455323344677788888886 78999988877788889995 799999998

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=87.50  E-value=0.37  Score=31.81  Aligned_cols=49  Identities=10%  Similarity=0.048  Sum_probs=36.4

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385        157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IPNYPDKNLPTLFIYFEGKMQSQMVGPD  215 (228)
Q Consensus       157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~~y~v~~LPTllvYk~G~~v~~lvG~~  215 (228)
                      |+.|..+...|...     ++.|..++.+..      ....+.+.+|++++  +|+.+   .|+.
T Consensus        11 C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~i---~Gf~   65 (76)
T d1h75a_          11 CVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLSW---SGFR   65 (76)
T ss_dssp             CHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEEE---ESCC
T ss_pred             CccHHHHHHHHHhc-----CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEEE---ECCC
Confidence            99999999999764     567777787763      24568899999876  78654   5653

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=87.25  E-value=0.29  Score=36.79  Aligned_cols=37  Identities=30%  Similarity=0.441  Sum_probs=30.3

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad  185 (228)
                      |++||+.|     |+.|..-.+.|.++..+|.  ++.++-|..+
T Consensus        33 GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d   76 (167)
T d1e2ya_          33 GKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCD   76 (167)
T ss_dssp             TSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             CCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCC
Confidence            35888888     9999999999999999985  4667777665

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=86.96  E-value=0.53  Score=35.46  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad  185 (228)
                      +++||+.|     |+.|..-.+.|.++..+|.++.++-|..+
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d   83 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISAD   83 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESS
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCC
Confidence            45788777     88999999999999999999999888766

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=86.37  E-value=0.86  Score=29.64  Aligned_cols=51  Identities=18%  Similarity=0.272  Sum_probs=36.1

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |+|.=   ||.|..+...|.+.     ++.|..++.+.-      ....+.+.+|.++  -+|+.++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~--i~g~~IG   66 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKHIG   66 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCCccCCEEE--ECCEEEE
Confidence            55544   99999999999876     466666666652      1345678999864  4887664

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.66  E-value=0.37  Score=36.32  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=27.8

Q ss_pred             CceEEEEe----cc-chHHHHHHHHHHHHhC----CCcEEEEEeCC
Q psy14385        149 GIWVVLHF----IP-LCSLINNHLSELAAKF----PTTKFIKSIST  185 (228)
Q Consensus       149 ~~~VVVhf----~~-~C~~l~~~L~~LA~ky----p~~KFvkI~ad  185 (228)
                      |++|||.|    |+ .|....+.|.++..++    .++.|+-|..+
T Consensus        31 Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          31 GEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            46899988    86 6999888888777654    46877777643

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=85.52  E-value=0.59  Score=34.32  Aligned_cols=34  Identities=26%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             eEEEEe---ccchHHHHHHHHHHHHhCC-CcEEEEEeC
Q psy14385        151 WVVLHF---IPLCSLINNHLSELAAKFP-TTKFIKSIS  184 (228)
Q Consensus       151 ~VVVhf---~~~C~~l~~~L~~LA~kyp-~~KFvkI~a  184 (228)
                      .||.+|   ||.|+.+.+.+..|.++++ ..++.....
T Consensus        21 ~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          21 VVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             EEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            444444   9999999999999999997 467766543

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=85.47  E-value=0.48  Score=35.55  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC
Q psy14385        149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTT  186 (228)
Q Consensus       149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~  186 (228)
                      +++|||.|     ||.|..-.+.|..+..+|.++.++-|..+.
T Consensus        42 gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~   84 (163)
T d1psqa_          42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDL   84 (163)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSC
T ss_pred             CcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEecc
Confidence            45777777     999999999999999999999998887763

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.14  E-value=0.37  Score=34.50  Aligned_cols=64  Identities=13%  Similarity=0.083  Sum_probs=42.7

Q ss_pred             hhHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEE
Q psy14385        137 DTYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFI  201 (228)
Q Consensus       137 edf~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllv  201 (228)
                      +.+++.+.+..   +|||+.        |+.|..+...|..+     .+.|..++.+.-       ....+-+.+|.++ 
T Consensus         5 ~~~i~~~i~~~---~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF-   75 (109)
T d1wika_           5 SSGLKVLTNKA---SVMLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY-   75 (109)
T ss_dssp             CCCHHHHHTTS---SEEEEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE-
T ss_pred             HHHHHHHHhcC---CEEEEeCCCCCCCCChHHHHHHHHHHhc-----CCCceEEEecccHHHHHHHHHhcCCCCCCeEE-
Confidence            44566666553   688875        99999999998653     356666676652       1334557889876 


Q ss_pred             EECCEEEeE
Q psy14385        202 YFEGKMQSQ  210 (228)
Q Consensus       202 Yk~G~~v~~  210 (228)
                       .+|+.++.
T Consensus        76 -i~g~~IGG   83 (109)
T d1wika_          76 -VRGDLVGG   83 (109)
T ss_dssp             -CSSSEEEC
T ss_pred             -ECCEEEcC
Confidence             58887764

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=84.55  E-value=0.83  Score=30.29  Aligned_cols=51  Identities=16%  Similarity=0.225  Sum_probs=35.7

Q ss_pred             EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385        152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS  209 (228)
Q Consensus       152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~  209 (228)
                      |.|+-   ||.|..+...|+..     ++.|..++.+..       ....+.+.+|.+  |.+|+.++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i--~i~~~~IG   63 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQI--FIDAQHIG   63 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE--EETTEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCCCCCCeE--EECCEEEe
Confidence            44544   99999999998775     455666666642       234577899986  45998764

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.33  E-value=0.96  Score=33.74  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             ceEEeChhhHHHHHHhcCCCceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---------------
Q psy14385        130 RVLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---------------  187 (228)
Q Consensus       130 ~V~eIs~edf~~eV~~a~~~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---------------  187 (228)
                      ....||-.+|        +|++||+.|     |+.|..-...|..+..+|.  ++..+-|.++..               
T Consensus        15 ~~~~vsL~d~--------~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~   86 (158)
T d1zyea1          15 EFKEISLDDF--------KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGG   86 (158)
T ss_dssp             SEEEEEGGGG--------TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTC
T ss_pred             CccEEeHHHh--------CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhcc
Confidence            3455665555        235888888     9999999999999999884  577777776530               


Q ss_pred             ----------------CCCCCCCC------Cc-EEEEEECCEEEeEEeCccccC
Q psy14385        188 ----------------IPNYPDKN------LP-TLFIYFEGKMQSQMVGPDEFR  218 (228)
Q Consensus       188 ----------------~~~y~v~~------LP-TllvYk~G~~v~~lvG~~~~G  218 (228)
                                      ...|++..      .| |++|=++|.+...+++....|
T Consensus        87 ~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~  140 (158)
T d1zyea1          87 LGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVG  140 (158)
T ss_dssp             CCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCC
T ss_pred             ccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCC
Confidence                            12344432      23 455558899988888766655

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=83.22  E-value=0.32  Score=36.21  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=25.7

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEE
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIK  181 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvk  181 (228)
                      +.+|+-|    ||.|+.+.+.+..|...++.+.++-
T Consensus        27 k~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~   62 (150)
T d1t3ba1          27 KHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLA   62 (150)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEE
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEE
Confidence            4455555    9999999999999999888776654

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.34  E-value=1.2  Score=34.56  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=39.1

Q ss_pred             CceEEeChhhHHHHHHhcCCCceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC
Q psy14385        129 GRVLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT  186 (228)
Q Consensus       129 G~V~eIs~edf~~eV~~a~~~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~  186 (228)
                      |...+|+-.+|        +|+|||++|     |+.|..-...|+++..+|.  ++.++-|..+.
T Consensus        18 g~~~~vsLsd~--------kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds   74 (186)
T d1n8ja_          18 GEFIEVTEKDT--------EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDT   74 (186)
T ss_dssp             TEEEEEEHHHH--------TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CeeEEEeHHHh--------CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccC
Confidence            55667776666        246899988     8889999999999999984  67888777664

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=0.38  Score=35.90  Aligned_cols=33  Identities=15%  Similarity=0.290  Sum_probs=25.0

Q ss_pred             ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEE
Q psy14385        150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS  182 (228)
Q Consensus       150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI  182 (228)
                      ..||+-|    ||.|+.+.+.+..+...+..+.|.-.
T Consensus        27 k~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~   63 (156)
T d1eeja1          27 KHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAF   63 (156)
T ss_dssp             CEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEec
Confidence            4555555    99999999999999887766555543