Psyllid ID: psy14416
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UJ83 | 578 | 2-hydroxyacyl-CoA lyase 1 | yes | N/A | 0.476 | 0.877 | 0.416 | 1e-113 | |
| Q9QXE0 | 581 | 2-hydroxyacyl-CoA lyase 1 | yes | N/A | 0.470 | 0.862 | 0.417 | 1e-112 | |
| Q8CHM7 | 581 | 2-hydroxyacyl-CoA lyase 1 | yes | N/A | 0.461 | 0.845 | 0.422 | 1e-111 | |
| Q54DA9 | 580 | Probable 2-hydroxyacyl-Co | yes | N/A | 0.437 | 0.803 | 0.316 | 1e-70 | |
| P39994 | 560 | Putative 2-hydroxyacyl-Co | yes | N/A | 0.322 | 0.612 | 0.416 | 1e-66 | |
| Q9Y7M1 | 568 | Putative 2-hydroxyacyl-Co | yes | N/A | 0.446 | 0.836 | 0.333 | 9e-66 | |
| Q9LF46 | 572 | 2-hydroxyacyl-CoA lyase O | yes | N/A | 0.334 | 0.622 | 0.350 | 2e-65 | |
| P40149 | 568 | Oxalyl-CoA decarboxylase | N/A | N/A | 0.332 | 0.623 | 0.333 | 7e-56 | |
| P0AFI0 | 564 | Probable oxalyl-CoA decar | N/A | N/A | 0.319 | 0.602 | 0.370 | 9e-56 | |
| P0AFI1 | 564 | Probable oxalyl-CoA decar | N/A | N/A | 0.319 | 0.602 | 0.370 | 9e-56 |
| >sp|Q9UJ83|HACL1_HUMAN 2-hydroxyacyl-CoA lyase 1 OS=Homo sapiens GN=HACL1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/550 (41%), Positives = 322/550 (58%), Gaps = 43/550 (7%)
Query: 257 SNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 316
SN +E +E++S +VIAQALK Q +EY+FGIVGIPV E+A+A QQ GI YIGMRNEQAA
Sbjct: 4 SNFAERSEEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGMRNEQAA 63
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
CYAA AIGYLT +PGVCLVVSGPGL+H GGMANA +NCWP+LVIGGS ++ E +G FQ
Sbjct: 64 CYAASAIGYLTSRPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQETMGAFQ 123
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
E PQVE R Y K+SARP +I I +EKAVR S +G+PG Y+D PA+ + ++N ++
Sbjct: 124 EFPQVEACRLYTKFSARPSSIEAIPFVIEKAVRSSIYGRPGACYVDIPADFVNLQVNVNS 183
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
+ K +E + + P + + + A+ +I
Sbjct: 184 I----KYME-----------------------------RCMSPPISMAETSAVCTAASVI 210
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHAL 556
AK PL+IIGKGAAY+ AE + V + LPFLPTPMGKGVVPD HP CV AAR+ AL
Sbjct: 211 RNAKQPLLIIGKGAAYAHAEESIKKLVEQYKLPFLPTPMGKGVVPDNHPYCVGAARSRAL 270
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
Q AD+++L GARLNWILHFG PR++ +VK IQVD+ AEEL N+V+ AV + ++ +
Sbjct: 271 QFADVIVLFGARLNWILHFGLPPRYQPDVKFIQVDICAEELGNNVKPAVTLLGNIHAVTK 330
Query: 617 QLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL---VIVNNNGIYGGFDETT 673
QL + L T W + S WW+ L+ K ++N + + +N ++ E
Sbjct: 331 QLLEELDKTP--WQYPPESKWWKTLREKMKSNEAASKELASKKSLPMNYYTVFYHVQEQL 388
Query: 674 YASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 733
E + + ++ N D T+ ++ G + ++ + G
Sbjct: 389 PRDCFVVSEGANTMDIGRTVLQNYLPRHRLDAGTFGTM-GVGLGFAIAAAVVAKDRSPGQ 447
Query: 734 YGGFDETTYASIVESGEVTTV----LPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL 789
+ E A EV T+ LP+IL++VNNNGIY GFD T+ +++ + T V+
Sbjct: 448 WIICVEGDSAFGFSGMEVETICRYNLPIILLVVNNNGIYQGFDTDTWKEMLKFQDATAVV 507
Query: 790 PVILVIVNNN 799
P + ++ N++
Sbjct: 508 PPMCLLPNSH 517
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Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. Homo sapiens (taxid: 9606) EC: 4EC: .EC: 1EC: .EC: -EC: .EC: - |
| >sp|Q9QXE0|HACL1_MOUSE 2-hydroxyacyl-CoA lyase 1 OS=Mus musculus GN=Hacl1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 236/565 (41%), Positives = 325/565 (57%), Gaps = 64/565 (11%)
Query: 254 IKKSNMSEDYD---EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGM 310
+ +SN +E D E++S +VIAQALK Q +EY+FG+VGIPV E+A+A Q+ GI YIGM
Sbjct: 1 MPESNSAEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGM 60
Query: 311 RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE 370
RNEQAACYAA A+GYLT +PGVCLVVSGPGL+H GGMANA +NCWP++VIGGS ++ E
Sbjct: 61 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQE 120
Query: 371 GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ 430
+G FQE PQVE R Y K+SARP I LI +EKAVR S +G+PG Y+D PA+ +
Sbjct: 121 AMGAFQEFPQVEACRLYTKFSARPSTIELIPFIIEKAVRSSIYGRPGACYIDIPADFVTL 180
Query: 431 RINQSALVPTPKVLEPTLPWP-GIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAEL 489
+ N +++ K E +P P +AE + +
Sbjct: 181 QANVTSI----KYKECCMPPPVSMAE------------------------------TSAV 206
Query: 490 KQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS 549
A+ ++ +AK PL+IIGKGAAYS AE + V +LPFLPTPMGKGVVPD HPNCV
Sbjct: 207 CAAASVLRDAKQPLLIIGKGAAYSHAEDSIRKLVEQCSLPFLPTPMGKGVVPDNHPNCVG 266
Query: 550 AARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
AAR+ ALQ+AD+++L GARLNWILHFG PR++++VK IQ+D+ AEEL N+V+ +V +
Sbjct: 267 AARSRALQSADVIVLFGARLNWILHFGLPPRYQADVKFIQIDICAEELGNNVRPSVILLG 326
Query: 610 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR--------QVKLPV----IL 657
D+ +QL + T W S WW+ L+ K ++N Q LP+ +
Sbjct: 327 DIDAVSKQLLEQFDKTP--WQCPPDSQWWKTLREKMKSNEAISKELASQKSLPMNYYTVF 384
Query: 658 VIVNNNGIYGGFDETTYASIVESGE--VTTVLPVILVIVNNNGIYG-GFDETTYASIVES 714
V F + A+ ++ G + LP + + G G G A++V
Sbjct: 385 YHVQEQLPRDSFIVSEGANTMDIGRTMLQNCLPRHRLDAGSFGTMGVGLGFAIAAALVAK 444
Query: 715 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 774
P VI GF +I LP+IL++VNNNGIY GFD
Sbjct: 445 DRS----PGQRVICVEGDSAFGFSGMEVETICRYN-----LPIILLVVNNNGIYQGFDAD 495
Query: 775 TYASIVESGEVTTVLPVILVIVNNN 799
T+ ++ E T +P + ++ N++
Sbjct: 496 TWEKMLHFQEAATTVPPMCLLPNSH 520
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Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|Q8CHM7|HACL1_RAT 2-hydroxyacyl-CoA lyase 1 OS=Rattus norvegicus GN=Hacl1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/566 (42%), Positives = 328/566 (57%), Gaps = 75/566 (13%)
Query: 254 IKKSNMSEDYD---EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGM 310
+ +SN +E D E++S +VIAQALK Q +EY+FG+VGIPV E+A+A Q+ GI YIGM
Sbjct: 1 MSESNSAEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGM 60
Query: 311 RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE 370
RNEQAACYAA A+GYLT +PGVCLVVSGPGL+H GGMANA +NCWP++VIGGS ++ E
Sbjct: 61 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQE 120
Query: 371 GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ 430
+G FQE PQVE R Y K+SARP +I I +EKAVR S +G+PG Y+D PA+L+
Sbjct: 121 AMGAFQEFPQVEACRLYSKFSARPSSIQHIPFVIEKAVRSSIYGRPGACYIDVPADLVTL 180
Query: 431 RINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELK 490
+ + +++ K E +P P L + ++
Sbjct: 181 QESTTSI----KYKECCMP-----------------------------PPLSLAETSAVR 207
Query: 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA 550
A+ ++ AK PL+IIGKGAAYS AE + V NLPFLPTPMGKGVVPD HPNCV A
Sbjct: 208 AAASVLRSAKQPLLIIGKGAAYSHAEDSIRKLVELCNLPFLPTPMGKGVVPDNHPNCVGA 267
Query: 551 ARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSD 610
AR+ ALQ AD+++L GARLNWILHFG PR++++VK IQ+D+ AEEL N+V+ +V + D
Sbjct: 268 ARSRALQFADVIVLFGARLNWILHFGLPPRYQADVKFIQIDICAEELGNNVRPSVTLLGD 327
Query: 611 VRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVK--------LPV----ILV 658
V +QL + + W + S WW+ L+ K + N V LP+ +
Sbjct: 328 VNAVSKQLLEQF--VKNPWQYPTDSKWWETLREKRKNNEAVSKELASKKSLPMNYYTVFY 385
Query: 659 IVNNNGIYGGFDETTYASIVESGE--VTTVLPVILVIVNNNGIYG---GFDETTYASIVE 713
V F + A+ ++ G + LP + + G G GF A+ V
Sbjct: 386 HVQEQLPRNCFIVSEGANTMDIGRTVLQNYLPRHRLDAGSFGTMGVGLGF---AIAAAVV 442
Query: 714 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTV----LPVILVIVNNNGIYG 769
+ E + VI V ++ + G EV T+ LP+I+++VNNNGIY
Sbjct: 443 AKERSPGQRVICVEGDSAFGFSGM------------EVETICRYNLPIIILVVNNNGIYQ 490
Query: 770 GFDETTYASIVE-SGEVTTVLPVILV 794
GFD T+ I+ G TT+ P+ L+
Sbjct: 491 GFDADTWGKILNFQGTATTIPPMCLL 516
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Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|Q54DA9|HACL1_DICDI Probable 2-hydroxyacyl-CoA lyase 1 OS=Dictyostelium discoideum GN=hacl1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 177/559 (31%), Positives = 276/559 (49%), Gaps = 93/559 (16%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
++IA+++K IE VFGIVG+P+ +A Q +G+ + G RNEQ+ YAA +GYLT P
Sbjct: 5 EIIAKSIKNSAIEKVFGIVGVPITPIAYELQAQGVGFFGFRNEQSCSYAASIVGYLTGLP 64
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 390
G+C+ VSGPG++H G+ NAQ N WPM+++ S Q G GGFQEC Q E A YCK
Sbjct: 65 GLCMTVSGPGVVHALAGVLNAQSNGWPMILLSSSIDQSLVGKGGFQECKQFESAELYCKK 124
Query: 391 SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP---- 446
I + ++ A+ S +PG Y+ PA+L+ + +S P + E
Sbjct: 125 CYYLTEIDHFPEILKDAIETSLSNRPGPVYIQIPADLIKSKCKES-----PNIREAAGYG 179
Query: 447 TLPW----PGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
T+ P + +K A QL+ EAK P
Sbjct: 180 TIAIKSVVPDMKLIKDAVQLLSEAKRP--------------------------------- 206
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLV 562
LVI GKGAAY ++E ELL F+ + +PFLP+PMGKG++ D HP V AAR++AL+NAD+V
Sbjct: 207 LVIGGKGAAYCRSENELLEFIEATKIPFLPSPMGKGLLRDDHPLVVGAARSYALKNADVV 266
Query: 563 LLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNS----VQAAVAIQSDVRLTVQQL 618
L+LGARLNW+ +FG+AP F ++VK I VD++ + + V +AI D RL++ ++
Sbjct: 267 LVLGARLNWMFNFGKAPTFSTDVKFIIVDVDENQASKTKNPNVVPEIAIVGDARLSIAEM 326
Query: 619 KQM-LSHTQRN---------WSFSATSPWWQELKLKCQTNRQVKLPVILVIVNNNGIYGG 668
+++ + T S WW L Q + ++ NN+ Y
Sbjct: 327 RKLFIGETDEQPQPPQDSLIKSMKMEESWWSNLNQDIQVKTKSLATLMSEPQNNDQEY-- 384
Query: 669 FDETTYASIVESGEVTTVLPVILVIVNN--NGIYGG---FDETTYASIVESGEVTTV--- 720
TY + + V + + VN N + G +T S +++G + T+
Sbjct: 385 ---LTYHKVFNALRVGGLFQEDTIFVNEGANTMDIGRLCIPQTLPRSRLDAGTLATMGVG 441
Query: 721 ----------LP-VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 769
P +V + + +G ++++ V LP++ +++NNNG+Y
Sbjct: 442 VGYSVAAQICFPDRSVVCIQGDSAFG------FSAMEMEVAVRYKLPIVFIVLNNNGVYE 495
Query: 770 GFDETT---YASIVESGEV 785
G + + Y S ES +
Sbjct: 496 GLESMSDPKYTSSTESASL 514
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Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. Dictyostelium discoideum (taxid: 44689) EC: 4 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|P39994|YEC0_YEAST Putative 2-hydroxyacyl-CoA lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEL020C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 163/391 (41%), Positives = 219/391 (56%), Gaps = 48/391 (12%)
Query: 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
+A Q AQ L+ GI+ VFGIVGIP+++LA GI +I RNEQAA YAA A GY++
Sbjct: 4 TATQHFAQLLQKYGIDTVFGIVGIPIVQLADTMVANGIKFIPCRNEQAASYAASAYGYIS 63
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 387
KPGV L+V GPGL+H G+ N+ N WP+LVI GS +Q GGFQE QV L P+
Sbjct: 64 DKPGVLLIVGGPGLIHALAGIYNSMSNRWPLLVIAGSSSQSDIHKGGFQELDQVSLLSPF 123
Query: 388 CKYSAR--PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI----NQSALVPTP 441
K++ + P NI +I Q KA+ G GVSY+D PA+ + N P
Sbjct: 124 LKFTGKLTPDNIDMITQ---KALNYCIQGTAGVSYIDVPADFIEYEKPLEGNDRTGNELP 180
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
+L P + P +++K+ QLIL+ K K
Sbjct: 181 MILTPNICGPDPSKIKKVVQLILQHK-------------------------------NKN 209
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADL 561
L++IGKGA + E L VN+FNLPFLPTPM KG+VPD+ P VS+AR+ AL+ AD+
Sbjct: 210 ILIVIGKGAVKNSHEIRRL--VNTFNLPFLPTPMAKGIVPDSSPLNVSSARSQALKIADI 267
Query: 562 VLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEEL-HNSVQ--AAVAIQSDVRLTVQQL 618
VL+LGARLNWILHFG +P++ S IQ D N E L N+V A ++I D+ L+V L
Sbjct: 268 VLVLGARLNWILHFGTSPKWNSESIFIQFDSNPETLGDNNVSPGADLSIWGDIGLSVTAL 327
Query: 619 KQMLSHTQRNWSFSATSPWWQELKLKCQTNR 649
+ L+ W +S QE++ K Q N+
Sbjct: 328 VEELTRQDSCWKYSGVK---QEIREKIQLNQ 355
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Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 4 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|Q9Y7M1|YGK4_SCHPO Putative 2-hydroxyacyl-CoA lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC725.04 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 181/543 (33%), Positives = 294/543 (54%), Gaps = 68/543 (12%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
+S ++++A+ L ++ VFGIVGIPVIE+ A Q GI ++G RNEQ+A YAA A GYL
Sbjct: 3 ISFSELVAKTLLDLEVKVVFGIVGIPVIEICEAIQASGIRFVGFRNEQSAAYAATAYGYL 62
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
T++PGVC+VV GPG++H G+ N++ N WP+L++ GS + G FQE QV P
Sbjct: 63 TQRPGVCVVVGGPGVVHAMAGVFNSKTNRWPLLLLAGSSETFQQNCGAFQELDQVSYLSP 122
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
+ K + RPP+ ++ + +A R+S G PG Y+D PAN + ++ P P + P
Sbjct: 123 HTKLAVRPPSPKMVVDSIRRAYRVSMTGTPGTCYVDLPANYIESTVDDFPKDPLPPI--P 180
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
+ P AP +PT +L++A+ + AKAPL+++
Sbjct: 181 SSP----------------KCAP--------DPT-------QLQKAAYYLKNAKAPLLVV 209
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLG 566
GKGAAY+ AE +LL FV +PFLP+PMGKG++P++HP VS+AR+ AL+NAD+VLL G
Sbjct: 210 GKGAAYACAEKQLLEFVEHTGIPFLPSPMGKGLLPESHPLNVSSARSAALRNADVVLLAG 269
Query: 567 ARLNWILHFGRAPRFKSNVKIIQVDLNAEEL-HNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
ARLNWI +G P++ N K IQ+D NAE L +N+ +AI +DV LT+ L +++
Sbjct: 270 ARLNWIFQYGLPPKWSPNAKFIQIDTNAETLGNNAADLDLAIWADVGLTIDCLFKLV--- 326
Query: 626 QRNWSFSA--TSPWWQEL-------KLKCQTNRQVKLPV----ILVIVNNNGIYGGFDET 672
+ W +S ++P+ + L + K +R+ +P+ L +VN
Sbjct: 327 -QTWKYSVGISTPYLRTLNETRSKNEKKALESRKSSIPLQMNYALYVVNEELQSLSLKSK 385
Query: 673 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASI-------VESGEVTTVLPVIL 725
+ V G T L+ V + G D T +++ + S + +
Sbjct: 386 RNITWVSEGANTMDRGRQLLEVTHP--RGRLDAGTMSTMGVGMGYAIASAFAHSSDKI-- 441
Query: 726 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 785
V+V + +G ++++ + L ++++++NNNG+Y G D Y ++ ++ ++
Sbjct: 442 VVVEGDSAFG------FSAMELETAIRNQLDLLVIVINNNGVYHGLDTDAYETLRDNHQL 495
Query: 786 TTV 788
T
Sbjct: 496 PTT 498
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Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 4 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|Q9LF46|HACL_ARATH 2-hydroxyacyl-CoA lyase OS=Arabidopsis thaliana GN=HACL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 213/397 (53%), Gaps = 41/397 (10%)
Query: 257 SNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 316
++ SE + N ++A++L G+ ++FG+VGIPV LA GI +I NEQ+A
Sbjct: 2 ADKSETTPPSIDGNVLVAKSLSHLGVTHMFGVVGIPVTSLASRAMALGIRFIAFHNEQSA 61
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
YAA A GYLT KPG+ L VSGPG +H G++NA +N WPM++I GSC Q G G FQ
Sbjct: 62 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNAWVNTWPMVMISGSCDQRDVGRGDFQ 121
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS- 435
E Q+E + + K S + ++ I V + + + G+PG YLD P ++L Q+I++S
Sbjct: 122 ELDQIEAVKAFSKLSEKAKDVREIPDCVSRVLDRAVSGRPGGCYLDIPTDVLRQKISESE 181
Query: 436 --ALVPTPKVLEPTLPWPG--IAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQ 491
LV + P G +E++ A L+ +A+ P
Sbjct: 182 ADKLVDEVERSRKEEPIRGSLRSEIESAVSLLRKAERP---------------------- 219
Query: 492 ASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA 551
L++ GKGAAYS+AE EL V +PFLPTPMGKG++PD H +AA
Sbjct: 220 -----------LIVFGKGAAYSRAEDELKKLVEITGIPFLPTPMGKGLLPDTHEFSATAA 268
Query: 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDV 611
R+ A+ D+ L++GARLNW+LHFG +P++ +VK I VD++ EE+ + + I D
Sbjct: 269 RSLAIGKCDVALVVGARLNWLLHFGESPKWDKDVKFILVDVSEEEIELR-KPHLGIVGDA 327
Query: 612 RLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648
+ + L + + + ++ W + + K + N
Sbjct: 328 KTVIGLLNREIKDDP--FCLGKSNSWVESISKKAKEN 362
|
Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|P40149|OXC_OXAFO Oxalyl-CoA decarboxylase OS=Oxalobacter formigenes GN=oxc PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 211/396 (53%), Gaps = 42/396 (10%)
Query: 259 MSEDYDEELSAN-QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAAC 317
MS D + EL+ V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A
Sbjct: 1 MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 318 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--GGF 375
YAA GY+ KPGVCL VS PG L+ +A+A NC+PM+++ GS ++ + G +
Sbjct: 61 YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
+E Q+ +ARP+CK S R +I I + +AVR + G+PG Y+D PA L Q I+
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTIS-- 178
Query: 436 ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPT-LPWPGIAELKQASR 494
+++A++L+ K ++P P + +A+
Sbjct: 179 --------------------VEEANKLLF----------KPIDPAPAQIPAEDAIARAAD 208
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH 554
LI AK P++++GKGAAY+Q + E+ + V +PFLP M KG++PD HP +A R
Sbjct: 209 LIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAF 268
Query: 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNV-KIIQVDLNAEELHNSVQAAVAIQSDVRL 613
AL D+ +L+GARLNW++ G+ + + K +Q+D+ A E+ ++ A + D++
Sbjct: 269 ALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKS 328
Query: 614 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR 649
V L++ L + A + W LK K N+
Sbjct: 329 AVSLLRKALKGAPK-----ADAEWTGALKAKVDGNK 359
|
Oxalobacter formigenes (taxid: 847) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|P0AFI0|OXC_ECOLI Probable oxalyl-CoA decarboxylase OS=Escherichia coli (strain K12) GN=oxc PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 218/386 (56%), Gaps = 46/386 (11%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
+I +ALK I+ ++G+VGIPV ++A Q EGI YIG R+EQ+A YAA A G+LT+KP
Sbjct: 12 HIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKP 71
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--GGFQECPQVELARPYC 388
G+CL VS PG L+ +ANA +N +PM++I GS + + G ++E Q+ A+PY
Sbjct: 72 GICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYA 131
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS-ALVPTPKVLEPT 447
K + R +G + +A+R+S G+PG YLD PAN+LA + + AL KV P+
Sbjct: 132 KAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVENPS 191
Query: 448 ---LPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
LP P + A L+ +A+ PL +
Sbjct: 192 PALLPCP--KSVTSAISLLAKAERPL---------------------------------I 216
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLL 564
I+GKGAAYSQA+ +L F+ S +PFLP M KG++ D HP +AAR+ AL NAD+V+L
Sbjct: 217 ILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML 276
Query: 565 LGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSH 624
+GARLNW+L G+ + ++ + IQ+D+ +E+ ++ AV + D+ ++Q ML+
Sbjct: 277 VGARLNWLLAHGKK-GWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQ---GMLAE 332
Query: 625 TQRNWSFSATSPWWQELKLKCQTNRQ 650
++N +F+ W L + Q N Q
Sbjct: 333 LKQN-TFTTPLVWRDILNIHKQQNAQ 357
|
Escherichia coli (strain K12) (taxid: 83333) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|P0AFI1|OXC_ECO57 Probable oxalyl-CoA decarboxylase OS=Escherichia coli O157:H7 GN=oxc PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 218/386 (56%), Gaps = 46/386 (11%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
+I +ALK I+ ++G+VGIPV ++A Q EGI YIG R+EQ+A YAA A G+LT+KP
Sbjct: 12 HIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKP 71
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--GGFQECPQVELARPYC 388
G+CL VS PG L+ +ANA +N +PM++I GS + + G ++E Q+ A+PY
Sbjct: 72 GICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYA 131
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS-ALVPTPKVLEPT 447
K + R +G + +A+R+S G+PG YLD PAN+LA + + AL KV P+
Sbjct: 132 KAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVENPS 191
Query: 448 ---LPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
LP P + A L+ +A+ PL +
Sbjct: 192 PALLPCP--KSVTSAISLLAKAERPL---------------------------------I 216
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLL 564
I+GKGAAYSQA+ +L F+ S +PFLP M KG++ D HP +AAR+ AL NAD+V+L
Sbjct: 217 ILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML 276
Query: 565 LGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSH 624
+GARLNW+L G+ + ++ + IQ+D+ +E+ ++ AV + D+ ++Q ML+
Sbjct: 277 VGARLNWLLAHGKK-GWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQ---GMLAE 332
Query: 625 TQRNWSFSATSPWWQELKLKCQTNRQ 650
++N +F+ W L + Q N Q
Sbjct: 333 LKQN-TFTTPLVWRDILNIHKQQNAQ 357
|
Escherichia coli O157:H7 (taxid: 83334) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | ||||||
| 170056814 | 567 | 2-hydroxyacyl-CoA lyase 1 [Culex quinque | 0.468 | 0.880 | 0.484 | 1e-136 | |
| 170066022 | 567 | 2-hydroxyphytanoyl-coa lyase [Culex quin | 0.468 | 0.880 | 0.482 | 1e-135 | |
| 158289987 | 567 | AGAP010368-PA [Anopheles gambiae str. PE | 0.455 | 0.855 | 0.486 | 1e-135 | |
| 195057253 | 568 | GH22747 [Drosophila grimshawi] gi|193899 | 0.455 | 0.853 | 0.488 | 1e-134 | |
| 194881517 | 568 | GG20879 [Drosophila erecta] gi|190658064 | 0.452 | 0.848 | 0.484 | 1e-134 | |
| 312377568 | 567 | hypothetical protein AND_11090 [Anophele | 0.472 | 0.887 | 0.462 | 1e-133 | |
| 19922626 | 568 | CG11208 [Drosophila melanogaster] gi|730 | 0.455 | 0.853 | 0.477 | 1e-133 | |
| 56201294 | 568 | unnamed protein product [Drosophila simu | 0.452 | 0.848 | 0.482 | 1e-133 | |
| 195486951 | 568 | GE13819 [Drosophila yakuba] gi|194177821 | 0.455 | 0.853 | 0.477 | 1e-133 | |
| 195170154 | 568 | GL10162 [Drosophila persimilis] gi|19411 | 0.452 | 0.848 | 0.480 | 1e-133 |
| >gi|170056814|ref|XP_001864201.1| 2-hydroxyacyl-CoA lyase 1 [Culex quinquefasciatus] gi|167876488|gb|EDS39871.1| 2-hydroxyacyl-CoA lyase 1 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 269/555 (48%), Positives = 342/555 (61%), Gaps = 56/555 (10%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ N V+A++LK QG+EYVFGIVGIPVIEL+MA Q EG+ YIGMRNEQ+ACYAAQAIGY
Sbjct: 2 EVDGNTVLARSLKEQGVEYVFGIVGIPVIELSMAMQAEGLKYIGMRNEQSACYAAQAIGY 61
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP+LVIGGS QDHEGIGGFQECPQVEL+R
Sbjct: 62 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLLVIGGSTFQDHEGIGGFQECPQVELSR 121
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKYSARP + LI QHVEKAVRL+ +G+PG +YLDFP NLL R VP KV
Sbjct: 122 PYCKYSARPAGVTLIPQHVEKAVRLACYGRPGAAYLDFPGNLLLAR------VPEEKVP- 174
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
KQ + EP + +P ++QA+ L+ AK PL+I
Sbjct: 175 -----------KQYAHP---------------EPPIAFPSEKCVRQAAHLLANAKRPLII 208
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
IGKGAAY++AE L V+ NLPFLPTPMGKGVVPD P CV+ ART ALQ AD +LLL
Sbjct: 209 IGKGAAYARAELHLRQLVHQTNLPFLPTPMGKGVVPDLDPQCVAPARTLALQKADCILLL 268
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNW+LHFGRAPR+ VKIIQVDLN EELHNSV ++VA+QSD+ +QL L++
Sbjct: 269 GARLNWMLHFGRAPRYSEGVKIIQVDLNPEELHNSVLSSVAVQSDIVPFTEQLIDELANM 328
Query: 626 QRNWSFSATSPWWQELKLKCQTNRQVKLPV---ILVIVNNNGIYGGFDETTYASIVESGE 682
+++F + WW +L+ KC NR++ + + V +N + ++ E + E
Sbjct: 329 --HFTFDNKNDWWVDLRAKCDKNRKIVDKMAQDVKVPLNYHAVFHHLQELIPKDAIIVSE 386
Query: 683 VTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNNGIY 734
+ + ++N D T+ + I + P VI
Sbjct: 387 GANTMDIGRTFLHNKWPRHRLDAGTFGTMGVGPGFAIAAALVCRDRFPGEKVICVEGDSA 446
Query: 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 794
GF +++ LPV++VIVNN GIY GFD+ TY + G++T V P +
Sbjct: 447 FGFSGMEIETMMRYQ-----LPVVIVIVNNGGIYSGFDKQTYDDMRSGGDLTQVTPPTAL 501
Query: 795 IVNNN-----GIYGG 804
V + G++G
Sbjct: 502 AVETHYEAMMGMFGA 516
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170066022|ref|XP_001868099.1| 2-hydroxyphytanoyl-coa lyase [Culex quinquefasciatus] gi|167862705|gb|EDS26088.1| 2-hydroxyphytanoyl-coa lyase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 268/555 (48%), Positives = 342/555 (61%), Gaps = 56/555 (10%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ N V+A++LK QG+EYVFGIVGIPVIEL+MA Q EG+ YIGMRNEQ+ACYAAQAIGY
Sbjct: 2 EVDGNTVLARSLKEQGVEYVFGIVGIPVIELSMAMQAEGLKYIGMRNEQSACYAAQAIGY 61
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPG+CLVVSGPGLLH GGMANAQ+NCWP+LVIGGS QDHEGIGGFQECPQVEL+R
Sbjct: 62 LTGKPGICLVVSGPGLLHVTGGMANAQVNCWPLLVIGGSTFQDHEGIGGFQECPQVELSR 121
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKYSARP + LI QHVEKAVRL+ +G+PG +YLDFP NLL R VP KV
Sbjct: 122 PYCKYSARPAGVTLIPQHVEKAVRLACYGRPGAAYLDFPGNLLLAR------VPEEKVP- 174
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
KQ + EP + +P ++QA+ L+ AK PL+I
Sbjct: 175 -----------KQYAHP---------------EPPIAFPSEKCVRQAAHLLANAKRPLII 208
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
IGKGAAY++AE L V+ NLPFLPTPMGKGVVPD P CV+ ART ALQ AD +LLL
Sbjct: 209 IGKGAAYARAELHLRQLVHQTNLPFLPTPMGKGVVPDLDPQCVAPARTLALQKADCILLL 268
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNW+LHFGRAPR+ VKIIQVDLN EELHNSV ++VA+QSD+ +QL L++
Sbjct: 269 GARLNWMLHFGRAPRYSEGVKIIQVDLNPEELHNSVLSSVAVQSDIVPFTEQLIDELANM 328
Query: 626 QRNWSFSATSPWWQELKLKCQTNRQVKLPV---ILVIVNNNGIYGGFDETTYASIVESGE 682
+++F + WW +L+ KC NR++ + + V +N + ++ E + E
Sbjct: 329 --HFTFDNKNDWWVDLRAKCDKNRKIVDKMAQDVKVPLNYHAVFHHLQELIPKDAIIVSE 386
Query: 683 VTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNNGIY 734
+ + ++N D T+ + I + P VI
Sbjct: 387 GANTMDIGRTFLHNKWPRHRLDAGTFGTMGVGPGFAIAAALVCRDRFPGEKVICVEGDSA 446
Query: 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 794
GF +++ LPV++VIVNN GIY GFD+ TY + G++T V P +
Sbjct: 447 FGFSGMEIETMMRYQ-----LPVVIVIVNNGGIYSGFDKQTYDDMRSGGDLTQVTPPTAL 501
Query: 795 IVNNN-----GIYGG 804
V + G++G
Sbjct: 502 AVETHYEAMMGMFGA 516
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158289987|ref|XP_311576.3| AGAP010368-PA [Anopheles gambiae str. PEST] gi|157018423|gb|EAA07115.3| AGAP010368-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 261/536 (48%), Positives = 337/536 (62%), Gaps = 51/536 (9%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
EL N V+A++L+ QGIEYVFGIVGIPV+EL+MA Q EG+ YIGMRNEQAACYAAQAIGY
Sbjct: 2 ELDGNAVLAKSLREQGIEYVFGIVGIPVVELSMAMQAEGLKYIGMRNEQAACYAAQAIGY 61
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP+LVIGGS +QDHEGIGGFQECPQVEL+R
Sbjct: 62 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLLVIGGSTSQDHEGIGGFQECPQVELSR 121
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARPP++ LI HVEKAVRL+ +G+PG SYLDFP NLL T K+++
Sbjct: 122 PYCKYAARPPSVALIPMHVEKAVRLACYGRPGASYLDFPGNLL-----------TAKIMD 170
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
LP + + LV +A+ L+ AK PLVI
Sbjct: 171 EVLP----VQYTHPPPPVPFPDPKLV------------------AEAAHLLCTAKRPLVI 208
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
+GKGAAY+++E ++ ++ NLPFLPTPMGKGVVPD P C++ ART ALQ AD+VLLL
Sbjct: 209 VGKGAAYARSELQVRQLIHQTNLPFLPTPMGKGVVPDLDPQCIAPARTLALQKADVVLLL 268
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNWILHFGR PR+ S+VKIIQVD+NAEE+HNSV + VAIQS + +QL L+
Sbjct: 269 GARLNWILHFGRPPRYSSDVKIIQVDVNAEEMHNSVPSKVAIQSHITPFTEQLIDALA-- 326
Query: 626 QRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI---VNNNGIYGGFDETTYASIVESGE 682
+ ++ F + WW++LK KC+TNR+V + L + +N ++ + + E
Sbjct: 327 KNHFRFGYENAWWKDLKAKCETNRKVVDAMALNVETPLNYYAVFHHLQQYIPKDAIIVSE 386
Query: 683 VTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNNGIY 734
+ + +++N D T+ + I + P VI
Sbjct: 387 GANTMDIGRTLLHNKFARHRLDAGTFGTMGVGPGFAIAAALYCRDHCPEKKVICVEGDSA 446
Query: 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 790
GF ++V LP+++VIVNN GIY GFD+ TY + G++T V P
Sbjct: 447 FGFSGMEIETMVRYQ-----LPIVIVIVNNGGIYAGFDKQTYDDMRSGGDLTHVTP 497
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195057253|ref|XP_001995225.1| GH22747 [Drosophila grimshawi] gi|193899431|gb|EDV98297.1| GH22747 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 262/536 (48%), Positives = 335/536 (62%), Gaps = 51/536 (9%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ A Q+IA++LK QG+EYVFGI+GIPVIEL+MA Q G+ YIGMRNEQAACYAAQAIGY
Sbjct: 3 EVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNEQAACYAAQAIGY 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP++VIGGS QDHEGIGGFQECPQVEL+R
Sbjct: 63 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGGSTNQDHEGIGGFQECPQVELSR 122
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARPP LI HVEKAVR +T+G+PGV+YLDFP N+L + +S +
Sbjct: 123 PYCKYAARPPTAALIPLHVEKAVRYTTYGRPGVAYLDFPGNILQSKAEESRIYKA----- 177
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
LP P APL +P ++ +A++L+ +AK PL+I
Sbjct: 178 --LPHP---------------VAPLA-----------YPPHDDVIRAAQLLRQAKRPLII 209
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
IGKGAAY+ AE L F+++ NLPFLPTPMGKGVVPD+ CVS+ART ALQ AD+VLLL
Sbjct: 210 IGKGAAYAHAENILRHFIDNTNLPFLPTPMGKGVVPDSAAQCVSSARTLALQQADVVLLL 269
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNWILHFGR PR+ +VK IQVD+ EELHNSV A+VAIQ+D+R +QL + ++
Sbjct: 270 GARLNWILHFGRTPRYDKDVKFIQVDICPEELHNSVVASVAIQADIRPFAEQLFEQMNAV 329
Query: 626 QRNWSFSATSPWWQELKLKCQTNRQVKLPVIL---VIVNNNGIYGGFDETTYASIVESGE 682
N+ F WW++L KCQ NR + L +N ++ E + E
Sbjct: 330 --NFRFGYEQAWWKQLAAKCQNNRDTVAQMSLNTTTPLNYYAVFHHLRELLPRDTIIVSE 387
Query: 683 VTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNNGIY 734
+ + ++ N D T+ + I + P V+
Sbjct: 388 GANTMDIGRSMLLNEQPRHRLDAGTFGTMGVGPGFAIAAALYCRDFAPGKRVLCVEGDSA 447
Query: 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 790
GF ++V LP+ +VIVNNNGIYGGFD+ T+ +I G++T + P
Sbjct: 448 FGFSGMEIETMVRYK-----LPITIVIVNNNGIYGGFDKDTFEAIRSDGDLTQITP 498
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194881517|ref|XP_001974877.1| GG20879 [Drosophila erecta] gi|190658064|gb|EDV55277.1| GG20879 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 261/539 (48%), Positives = 335/539 (62%), Gaps = 57/539 (10%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ A Q+IA++LK QG+EYVFGI+GIPVIEL+MA Q G+ YIGMRNEQAACYAAQAIGY
Sbjct: 3 EVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNEQAACYAAQAIGY 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP++VIGG+ QDHEGIGGFQECPQVEL+R
Sbjct: 63 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLVVIGGATNQDHEGIGGFQECPQVELSR 122
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARP LI HVEKAVR +T+G+PGV+YLDFP N
Sbjct: 123 PYCKYAARPATAALIPLHVEKAVRYATYGRPGVAYLDFPGN------------------- 163
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLE---PTLPWPGIAELKQASRLILEAKAP 502
IL++KA I KVL P L +P ++ QA++L+ +AK P
Sbjct: 164 -----------------ILQSKAEEARIYKVLAHPAPPLAYPPHDDVIQAAKLLRQAKRP 206
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLV 562
LVI+GKG+AY+ AE L F+ + NLPFLPTPMGKGVV D P CVS+ART ALQ AD+V
Sbjct: 207 LVIVGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQCVSSARTLALQKADVV 266
Query: 563 LLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622
LLLGARLNWILHFG+APR+ +VK IQVD+N EELHNSV A+VAIQ+D+R +QL + +
Sbjct: 267 LLLGARLNWILHFGKAPRYDKDVKFIQVDINPEELHNSVVASVAIQADIRPFAEQLFEQM 326
Query: 623 SHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL---VIVNNNGIYGGFDETTYASIVE 679
+ N+ F WW++L +KC+ NR + + +N ++ E +
Sbjct: 327 NAV--NFRFGYEQDWWKQLAVKCKQNRDTVQKMSMNTETPLNYYAVFHHLRELLPKDTII 384
Query: 680 SGEVTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNN 731
E + + ++ N D T+ + + + P V+
Sbjct: 385 VSEGANTMDIGRSMLLNEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEG 444
Query: 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 790
GF ++V LPV +VIVNNNGIYGGFD+ T+ +I G++T + P
Sbjct: 445 DSAFGFSGMEIETMVRYK-----LPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITP 498
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312377568|gb|EFR24375.1| hypothetical protein AND_11090 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 260/562 (46%), Positives = 341/562 (60%), Gaps = 59/562 (10%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ N V+A+ALK QGIEYVFGIVGIPV+EL+MA Q EG+ Y+GMRNEQ+ACYAAQAIGY
Sbjct: 2 EVDGNAVLAKALKEQGIEYVFGIVGIPVVELSMAMQAEGLKYVGMRNEQSACYAAQAIGY 61
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP+LVIGGS +QDHEGIGGFQECPQVEL+R
Sbjct: 62 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLLVIGGSTSQDHEGIGGFQECPQVELSR 121
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARPP++ LI HVEKAVRL+ +G+PG +YLDFP NLL +I + A+
Sbjct: 122 PYCKYAARPPSVSLIPLHVEKAVRLACYGRPGAAYLDFPGNLLTAKITEDAI-------- 173
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
SQ A P L +P + + Q ++L+ A+ PLVI
Sbjct: 174 -------------PSQYGHPA------------PPLAFPDPSLVSQVAQLLANARRPLVI 208
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
+GKGAAY+ AE ++ ++ NLPFLPTPMGKGVVPD P C++ ART ALQ AD+VLLL
Sbjct: 209 VGKGAAYAHAELQVRQLIHQTNLPFLPTPMGKGVVPDLDPQCIAPARTLALQKADVVLLL 268
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNW+LHFGR PR+ +VK IQVDL EELHNSV +++AIQS + +QL L+
Sbjct: 269 GARLNWMLHFGRPPRYSEDVKFIQVDLQPEELHNSVLSSLAIQSHIVPFTEQLIDALA-- 326
Query: 626 QRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI---VNNNGIYGGFDETTYASIVESGE 682
++++ F WW++LK KC NR+ + L +N ++ + + E
Sbjct: 327 KKHFRFDERQEWWKDLKAKCDKNRKTVEQMALSTETPLNYYAVFTHLQQYIPKDAIIVSE 386
Query: 683 VTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNNGIY 734
+ + +++N D T+ + I + P V+
Sbjct: 387 GANTMDIGRTLLHNKLARHRLDAGTFGTMGVGPGFAIAAALFCRDRFPGKKVVCVEGDSA 446
Query: 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 794
GF ++V LP++LVIVNN GIY GFD+ TY + G++T V P +
Sbjct: 447 FGFSGMELETMVRYQ-----LPIVLVIVNNGGIYAGFDKQTYDDMRSGGDLTQVTPASAL 501
Query: 795 --------IVNNNGIYGGFDET 808
++N G+ G F T
Sbjct: 502 TYETHYENMMNMFGMKGHFVRT 523
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|19922626|ref|NP_611460.1| CG11208 [Drosophila melanogaster] gi|7302414|gb|AAF57501.1| CG11208 [Drosophila melanogaster] gi|16198201|gb|AAL13912.1| LD40177p [Drosophila melanogaster] gi|220946180|gb|ACL85633.1| CG11208-PA [synthetic construct] gi|220955878|gb|ACL90482.1| CG11208-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 256/536 (47%), Positives = 334/536 (62%), Gaps = 51/536 (9%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ A Q+IA++LK QG+EYVFGI+GIPVIEL+MA Q G+ YIGMRNEQAACYAAQAIGY
Sbjct: 3 EVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNEQAACYAAQAIGY 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP++VIGG+ QDHEGIGGFQECPQVEL+R
Sbjct: 63 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGGATNQDHEGIGGFQECPQVELSR 122
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARP LI HVEKAVR +T+G+PGV+YLDFP N+L + ++++
Sbjct: 123 PYCKYAARPATAALIPLHVEKAVRYATYGRPGVAYLDFPGNILQSKAQEASIYKA----- 177
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
L P P L +P ++ +A++L+ +AK PLVI
Sbjct: 178 --LAHPA--------------------------PPLAYPPHDDVIRAAKLLRQAKRPLVI 209
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
+GKG+AY+ AE L F+ + NLPFLPTPMGKGVV D P CVS+ART ALQ AD+VLLL
Sbjct: 210 VGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQCVSSARTLALQKADVVLLL 269
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNWILHFG+APR+ +VK IQVD+N EELHNSV A+VAIQ+D+R +QL + ++
Sbjct: 270 GARLNWILHFGKAPRYDKDVKFIQVDINPEELHNSVVASVAIQADIRPFAEQLFEQMNAV 329
Query: 626 QRNWSFSATSPWWQELKLKCQTNRQVKLPVIL---VIVNNNGIYGGFDETTYASIVESGE 682
N+ F WW++L +KC+ NR + L +N ++ E + E
Sbjct: 330 --NFRFGYEQDWWKQLAVKCKQNRDTVQKMSLNTETPLNYYAVFHHLRELLPKDTIIVSE 387
Query: 683 VTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNNGIY 734
+ + ++ N D T+ + + + P V+
Sbjct: 388 GANTMDIGRSMLLNEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSA 447
Query: 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 790
GF ++V LPV +VIVNNNGIYGGFD+ T+ +I G++T + P
Sbjct: 448 FGFSGMEIETMVRYK-----LPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITP 498
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|56201294|dbj|BAD72897.1| unnamed protein product [Drosophila simulans] gi|56201314|dbj|BAD72915.1| unnamed protein product [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 260/539 (48%), Positives = 334/539 (61%), Gaps = 57/539 (10%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ A Q+IA++LK QG+EYVFGI+GIPVIEL+MA Q G+ YIGMRNEQAACYAAQAIGY
Sbjct: 3 EVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNEQAACYAAQAIGY 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP++VIGG+ QDHEGIGGFQECPQVEL+R
Sbjct: 63 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGGATNQDHEGIGGFQECPQVELSR 122
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARP LI HVEKAVR +T+G+PGV+YLDFP N
Sbjct: 123 PYCKYAARPATAALIPLHVEKAVRYATYGRPGVAYLDFPGN------------------- 163
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLE---PTLPWPGIAELKQASRLILEAKAP 502
IL++KA I K L P L +P ++ +A++L+ +AK P
Sbjct: 164 -----------------ILQSKAQEARIYKALAHPAPPLAYPPHDDVIRAAKLLRQAKRP 206
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLV 562
LVI+GKG+AY+ AE L F+ + NLPFLPTPMGKGVV D P CVS+ART ALQ AD+V
Sbjct: 207 LVIVGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQCVSSARTLALQKADVV 266
Query: 563 LLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622
LLLGARLNWILHFG+APR+ +VK IQVD+N EELHNSV A+VAIQ+D+R +QL + +
Sbjct: 267 LLLGARLNWILHFGKAPRYDKDVKFIQVDINPEELHNSVVASVAIQADIRPFAEQLFEQM 326
Query: 623 SHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL---VIVNNNGIYGGFDETTYASIVE 679
+ N+ F WW++L +KC+ NR + L +N ++ E +
Sbjct: 327 NAV--NFRFGYEQDWWKQLAVKCKQNRDTVQKMSLNTETPLNYYAVFHHLRELLPKDTII 384
Query: 680 SGEVTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNN 731
E + + ++ N D T+ + + + P V+
Sbjct: 385 VSEGANTMDIGRSMLLNEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEG 444
Query: 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 790
GF ++V LPV +VIVNNNGIYGGFD+ T+ +I G++T + P
Sbjct: 445 DSAFGFSGMEIETMVRYK-----LPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITP 498
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195486951|ref|XP_002091720.1| GE13819 [Drosophila yakuba] gi|194177821|gb|EDW91432.1| GE13819 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 256/536 (47%), Positives = 334/536 (62%), Gaps = 51/536 (9%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ A Q+IA++LK QG+EYVFGI+GIPVIEL+MA Q G+ YIGMRNEQAACYAAQAIGY
Sbjct: 3 EVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNEQAACYAAQAIGY 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP++VIGG+ QDHEGIGGFQECPQVEL+R
Sbjct: 63 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGGATNQDHEGIGGFQECPQVELSR 122
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARP LI HVEKAVR +T+G+PGV+YLDFP N+L +
Sbjct: 123 PYCKYAARPATAALIPLHVEKAVRYATYGRPGVAYLDFPGNILQSK-------------- 168
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
Q +++ + P P L +P ++ +A++L+ +AK PLVI
Sbjct: 169 -----------AQEARIYKASAHP--------APPLAYPPHDDVIRAAKLLRQAKRPLVI 209
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
+GKG+AY+ AE L F+ + NLPFLPTPMGKGVV D P CVS+ART ALQ AD+VLLL
Sbjct: 210 VGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQCVSSARTLALQKADVVLLL 269
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNWILHFG+APR+ +VK IQVD+N EELHNSV A+VAIQ+D+R +QL + ++
Sbjct: 270 GARLNWILHFGKAPRYDKDVKFIQVDINPEELHNSVVASVAIQADIRPFAEQLFEQMNAV 329
Query: 626 QRNWSFSATSPWWQELKLKCQTNRQVKLPVIL---VIVNNNGIYGGFDETTYASIVESGE 682
N+ F WW++L +KC+ NR + L +N ++ E + E
Sbjct: 330 --NFRFGYEQDWWKQLAVKCKQNRDTVQKMSLNTETPLNYYAVFHHLRELLPKDTIIVSE 387
Query: 683 VTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNNGIY 734
+ + ++ N D T+ + + + P V+
Sbjct: 388 GANTMDIGRSMLLNEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSA 447
Query: 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 790
GF ++V LPV +VIVNNNGIYGGFD+ T+ +I G++T + P
Sbjct: 448 FGFSGMEIETMVRYK-----LPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITP 498
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195170154|ref|XP_002025878.1| GL10162 [Drosophila persimilis] gi|194110742|gb|EDW32785.1| GL10162 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 259/539 (48%), Positives = 333/539 (61%), Gaps = 57/539 (10%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
++ A Q+IA++LK QG++YVFGI+GIPVIEL+MA Q G+ YIGMRNEQAACYAAQAIGY
Sbjct: 3 DVEAVQIIAESLKQQGVDYVFGIIGIPVIELSMAFQAAGLKYIGMRNEQAACYAAQAIGY 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP++VIGG+ QDHEGIGGFQECPQVEL+R
Sbjct: 63 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGGATNQDHEGIGGFQECPQVELSR 122
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARPP LI HVEKAVR +T+G+PGV+YLDFP N
Sbjct: 123 PYCKYAARPPTAALIPLHVEKAVRYATYGRPGVAYLDFPGN------------------- 163
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLE---PTLPWPGIAELKQASRLILEAKAP 502
IL++KAP I K L P + +P ++ ASRL+ +AK P
Sbjct: 164 -----------------ILQSKAPEARIYKALAHPAPPVAYPPHDDVIAASRLLRQAKRP 206
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLV 562
LVI+GKG AY+ AE L F+ + NLPFLPTPMGKGVV D P CVS+ART ALQ AD+V
Sbjct: 207 LVIVGKGCAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQCVSSARTLALQKADVV 266
Query: 563 LLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622
LLLGARLNWILHFGR+PR+ +VK IQVD+ EELHNSV ++VAIQSD+R +QL + +
Sbjct: 267 LLLGARLNWILHFGRSPRYDKDVKFIQVDICPEELHNSVISSVAIQSDIRPFAEQLFEQM 326
Query: 623 SHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL---VIVNNNGIYGGFDETTYASIVE 679
+ N+ F WW++L +KC+ N+ + L +N ++ E +
Sbjct: 327 NAV--NFRFGYEQDWWKQLAVKCKQNKDTVQQMSLNTSTPLNYYAVFHHLRELLPKDTII 384
Query: 680 SGEVTTVLPVILVIVNNNGIYGGFDETTYAS--------IVESGEVTTVLPVILVIVNNN 731
E + + ++ N D T+ + + + P V+
Sbjct: 385 VSEGANTMDIGRSMLLNEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEG 444
Query: 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 790
GF ++V LPV +VIVNNNGIYGGFD+ T+ +I G++T + P
Sbjct: 445 DSAFGFSGMEIETMVRYK-----LPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITP 498
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | ||||||
| FB|FBgn0034488 | 568 | CG11208 [Drosophila melanogast | 0.197 | 0.369 | 0.652 | 2.9e-97 | |
| ZFIN|ZDB-GENE-040426-2058 | 568 | hacl1 "2-hydroxyacyl-CoA lyase | 0.198 | 0.371 | 0.521 | 5.7e-124 | |
| UNIPROTKB|Q9UJ83 | 578 | HACL1 "2-hydroxyacyl-CoA lyase | 0.205 | 0.378 | 0.557 | 5.2e-123 | |
| MGI|MGI:1929657 | 581 | Hacl1 "2-hydroxyacyl-CoA lyase | 0.206 | 0.378 | 0.533 | 9.3e-120 | |
| UNIPROTKB|F1NYG7 | 574 | HACL1 "Uncharacterized protein | 0.198 | 0.367 | 0.545 | 4.3e-117 | |
| UNIPROTKB|E2R9K1 | 581 | HACL1 "Uncharacterized protein | 0.202 | 0.371 | 0.546 | 1.8e-78 | |
| UNIPROTKB|F1MVP8 | 581 | HACL1 "Uncharacterized protein | 0.203 | 0.373 | 0.539 | 7.9e-78 | |
| RGD|619849 | 581 | Hacl1 "2-hydroxyacyl-CoA lyase | 0.208 | 0.382 | 0.528 | 2.7e-75 | |
| UNIPROTKB|J9NS82 | 763 | HACL1 "Uncharacterized protein | 0.202 | 0.283 | 0.546 | 7.8e-76 | |
| UNIPROTKB|E9PEN4 | 518 | HACL1 "2-hydroxyacyl-CoA lyase | 0.171 | 0.353 | 0.518 | 1.9e-98 |
| FB|FBgn0034488 CG11208 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
Identities = 137/210 (65%), Positives = 170/210 (80%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E+ A Q+IA++LK QG+EYVFGI+GIPVIEL+MA Q G+ YIGMRNEQAACYAAQAIGY
Sbjct: 3 EVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNEQAACYAAQAIGY 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT KPGVCLVVSGPGLLH GGMANAQ+NCWP++VIGG+ QDHEGIGGFQECPQVEL+R
Sbjct: 63 LTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGGATNQDHEGIGGFQECPQVELSR 122
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
PYCKY+ARP LI HVEKAVR +T+G+PGV+YLDFP N+L + ++++
Sbjct: 123 PYCKYAARPATAALIPLHVEKAVRYATYGRPGVAYLDFPGNILQSKAQEASIYKALAHPA 182
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGK 475
P L +P ++ +A++L+ +AK PLVI+GK
Sbjct: 183 PPLAYPPHDDVIRAAKLLRQAKRPLVIVGK 212
|
|
| ZFIN|ZDB-GENE-040426-2058 hacl1 "2-hydroxyacyl-CoA lyase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 5.7e-124, Sum P(3) = 5.7e-124
Identities = 110/211 (52%), Positives = 151/211 (71%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
+E++ Q+IA ALK Q +EY+FGIVG+P+IE+AMA Q GI Y+GMRNEQAACYAA AIG
Sbjct: 2 DEVTGAQLIAAALKDQNVEYMFGIVGVPIIEVAMAAQAAGIKYVGMRNEQAACYAASAIG 61
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
YLT +P VCLVVSGPGL+H GGMANA +NCWP++V+GGS ++ E G FQE PQVE
Sbjct: 62 YLTGRPAVCLVVSGPGLIHALGGMANANVNCWPVIVLGGSSDRNQETTGAFQEFPQVEAC 121
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
R Y K+SARP ++ +I VEKAVR S +G+PG Y+D +++ +I+++ +
Sbjct: 122 RLYSKFSARPSSLEMIPAVVEKAVRSSIYGRPGACYIDIAGDMVNAKIDRATVRFVSCCP 181
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGK 475
P + E+ QA +L+ +++PL+IIGK
Sbjct: 182 APPVSQADCREITQAVRLLKTSQSPLIIIGK 212
|
|
| UNIPROTKB|Q9UJ83 HACL1 "2-hydroxyacyl-CoA lyase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 5.2e-123, Sum P(3) = 5.2e-123
Identities = 122/219 (55%), Positives = 159/219 (72%)
Query: 257 SNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 316
SN +E +E++S +VIAQALK Q +EY+FGIVGIPV E+A+A QQ GI YIGMRNEQAA
Sbjct: 4 SNFAERSEEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGMRNEQAA 63
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
CYAA AIGYLT +PGVCLVVSGPGL+H GGMANA +NCWP+LVIGGS ++ E +G FQ
Sbjct: 64 CYAASAIGYLTSRPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQETMGAFQ 123
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
E PQVE R Y K+SARP +I I +EKAVR S +G+PG Y+D PA+ + ++N ++
Sbjct: 124 EFPQVEACRLYTKFSARPSSIEAIPFVIEKAVRSSIYGRPGACYVDIPADFVNLQVNVNS 183
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGK 475
+ + + P + + + A+ +I AK PL+IIGK
Sbjct: 184 IKYMERCMSPPISMAETSAVCTAASVIRNAKQPLLIIGK 222
|
|
| MGI|MGI:1929657 Hacl1 "2-hydroxyacyl-CoA lyase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 9.3e-120, Sum P(3) = 9.3e-120
Identities = 119/223 (53%), Positives = 159/223 (71%)
Query: 256 KSNMSEDYD---EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRN 312
+SN +E D E++S +VIAQALK Q +EY+FG+VGIPV E+A+A Q+ GI YIGMRN
Sbjct: 3 ESNSAEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGMRN 62
Query: 313 EQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI 372
EQAACYAA A+GYLT +PGVCLVVSGPGL+H GGMANA +NCWP++VIGGS ++ E +
Sbjct: 63 EQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQEAM 122
Query: 373 GGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
G FQE PQVE R Y K+SARP I LI +EKAVR S +G+PG Y+D PA+ + +
Sbjct: 123 GAFQEFPQVEACRLYTKFSARPSTIELIPFIIEKAVRSSIYGRPGACYIDIPADFVTLQA 182
Query: 433 NQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGK 475
N +++ + P + + + A+ ++ +AK PL+IIGK
Sbjct: 183 NVTSIKYKECCMPPPVSMAETSAVCAAASVLRDAKQPLLIIGK 225
|
|
| UNIPROTKB|F1NYG7 HACL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 4.3e-117, Sum P(3) = 4.3e-117
Identities = 115/211 (54%), Positives = 150/211 (71%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
EELS Q+IA+AL+ Q IEY+FG+VGIP+ E+A+A Q GI YIGMRNEQAACYAA A+G
Sbjct: 8 EELSGAQLIAEALRAQNIEYMFGVVGIPITEVAVAAQAAGIKYIGMRNEQAACYAASAVG 67
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
YLT +PGVCLVVSGPG LHT GGMANA +NCWP++VIGGS ++ E +G FQE PQVE A
Sbjct: 68 YLTGRPGVCLVVSGPGFLHTLGGMANANMNCWPLIVIGGSSDRNQETMGAFQEFPQVEAA 127
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
R Y K S RP ++ I +EKAVR S +G+PG Y+D P + + ++N+S++
Sbjct: 128 RLYNKLSVRPSSLEAIPAVIEKAVRTSIYGRPGSCYIDIPGDFVNLQVNKSSVKYVECCP 187
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGK 475
P + + + +A +I AK PL+IIGK
Sbjct: 188 PPPISTAEHSAVSEAVSIIAHAKQPLLIIGK 218
|
|
| UNIPROTKB|E2R9K1 HACL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 1.8e-78, Sum P(2) = 1.8e-78
Identities = 118/216 (54%), Positives = 156/216 (72%)
Query: 260 SEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYA 319
S+ +E++S +VIAQALK Q +EYVFGIVGIPV E+A+A Q+ GI Y+GMRNEQAACYA
Sbjct: 10 SDGGEEKVSGAEVIAQALKTQDVEYVFGIVGIPVTEIAVAAQKLGIRYVGMRNEQAACYA 69
Query: 320 AQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 379
A A+GYLT +PGVCLVVSGPGL+H GGMANA +NCWP++VIGGS + E +G FQE P
Sbjct: 70 ASAVGYLTGRPGVCLVVSGPGLIHALGGMANANVNCWPLIVIGGSSERRQETMGAFQEFP 129
Query: 380 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVP 439
QVE R YCK+SARP +I I +EKAVR S +G+PG Y+D PA+ + ++N +++
Sbjct: 130 QVEACRLYCKFSARPSSIETIPSIIEKAVRSSIYGRPGPCYVDIPADFVNFQVNVNSIKY 189
Query: 440 TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGK 475
L P + + + A+ ++ AK PL+IIGK
Sbjct: 190 VECCLPPPVSMAETSAVYMAASVLRNAKRPLLIIGK 225
|
|
| UNIPROTKB|F1MVP8 HACL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 7.9e-78, Sum P(2) = 7.9e-78
Identities = 117/217 (53%), Positives = 157/217 (72%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACY 318
+S+ + ++S +VIAQALK Q + Y+FGIVGIPV E+A+A Q+ GI YIGMRNEQAACY
Sbjct: 9 LSDGLEGQVSGARVIAQALKTQDVNYMFGIVGIPVTEIALAAQEVGIRYIGMRNEQAACY 68
Query: 319 AAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC 378
AA A+GYLT +PGVCLVVSGPGL+H+ GGMANA +NCWP++VIGGS + E +G FQE
Sbjct: 69 AASAVGYLTGRPGVCLVVSGPGLVHSLGGMANANMNCWPLIVIGGSSERSQETMGAFQEF 128
Query: 379 PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALV 438
PQVE R Y K+SARP +I I +EKAVR S +G+PG Y+D PA+ ++ ++N S++
Sbjct: 129 PQVEACRLYSKFSARPSSIEAIPSIIEKAVRSSIYGRPGACYVDIPADFVSLQVNVSSVK 188
Query: 439 PTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGK 475
+ P + + ++ A+ +I AK PLVIIGK
Sbjct: 189 YVECCMPPPISMAETSAVRMAASVIRNAKQPLVIIGK 225
|
|
| RGD|619849 Hacl1 "2-hydroxyacyl-CoA lyase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 2.7e-75, Sum P(2) = 2.7e-75
Identities = 119/225 (52%), Positives = 161/225 (71%)
Query: 254 IKKSNMSEDYD---EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGM 310
+ +SN +E D E++S +VIAQALK Q +EY+FG+VGIPV E+A+A Q+ GI YIGM
Sbjct: 1 MSESNSAEGSDRSEEQVSGAKVIAQALKTQDVEYMFGVVGIPVTEIALAAQELGIKYIGM 60
Query: 311 RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE 370
RNEQAACYAA A+GYLT +PGVCLVVSGPGL+H GGMANA +NCWP++VIGGS ++ E
Sbjct: 61 RNEQAACYAASAVGYLTGRPGVCLVVSGPGLIHALGGMANANMNCWPLIVIGGSSERNQE 120
Query: 371 GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ 430
+G FQE PQVE R Y K+SARP +I I +EKAVR S +G+PG Y+D PA+L+
Sbjct: 121 AMGAFQEFPQVEACRLYSKFSARPSSIQHIPFVIEKAVRSSIYGRPGACYIDVPADLVTL 180
Query: 431 RINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGK 475
+ + +++ + P L + ++ A+ ++ AK PL+IIGK
Sbjct: 181 QESTTSIKYKECCMPPPLSLAETSAVRAAASVLRSAKQPLLIIGK 225
|
|
| UNIPROTKB|J9NS82 HACL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 7.8e-76, Sum P(2) = 7.8e-76
Identities = 118/216 (54%), Positives = 156/216 (72%)
Query: 260 SEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYA 319
S+ +E++S +VIAQALK Q +EYVFGIVGIPV E+A+A Q+ GI Y+GMRNEQAACYA
Sbjct: 10 SDGGEEKVSGAEVIAQALKTQDVEYVFGIVGIPVTEIAVAAQKLGIRYVGMRNEQAACYA 69
Query: 320 AQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 379
A A+GYLT +PGVCLVVSGPGL+H GGMANA +NCWP++VIGGS + E +G FQE P
Sbjct: 70 ASAVGYLTGRPGVCLVVSGPGLIHALGGMANANVNCWPLIVIGGSSERRQETMGAFQEFP 129
Query: 380 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVP 439
QVE R YCK+SARP +I I +EKAVR S +G+PG Y+D PA+ + ++N +++
Sbjct: 130 QVEACRLYCKFSARPSSIETIPSIIEKAVRSSIYGRPGPCYVDIPADFVNFQVNVNSIKY 189
Query: 440 TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGK 475
L P + + + A+ ++ AK PL+IIGK
Sbjct: 190 VECCLPPPVSMAETSAVYMAASVLRNAKRPLLIIGK 225
|
|
| UNIPROTKB|E9PEN4 HACL1 "2-hydroxyacyl-CoA lyase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.9e-98, Sum P(3) = 1.9e-98
Identities = 97/187 (51%), Positives = 123/187 (65%)
Query: 257 SNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 316
SN +E +E++S +VIAQALK Q +EY+FGIVGIPV E+A+A QQ GI YIGMRNEQAA
Sbjct: 4 SNFAERSEEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGMRNEQAA 63
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
CYAA AIGYLT +PGVCLVVSGPGL+H GGMANA +NCWP+LVIGGS ++ E +G FQ
Sbjct: 64 CYAASAIGYLTSRPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQETMGAFQ 123
Query: 377 ECPQVELA----RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
E PQ + RP Y P + + +V + P +S + A A +
Sbjct: 124 EFPQAVRSSIYGRPGACYVDIPADFVNLQVNVNSIKYMERCMSPPISMAETSAVCTAASV 183
Query: 433 NQSALVP 439
++A P
Sbjct: 184 IRNAKQP 190
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1065 | |||
| PRK09259 | 569 | PRK09259, PRK09259, putative oxalyl-CoA decarboxyl | 2e-93 | |
| TIGR03254 | 554 | TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | 1e-88 | |
| COG0028 | 550 | COG0028, IlvB, Thiamine pyrophosphate-requiring en | 1e-84 | |
| cd07035 | 155 | cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) bindin | 1e-50 | |
| pfam02776 | 172 | pfam02776, TPP_enzyme_N, Thiamine pyrophosphate en | 5e-49 | |
| cd07035 | 155 | cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) bindin | 3e-48 | |
| pfam02776 | 172 | pfam02776, TPP_enzyme_N, Thiamine pyrophosphate en | 2e-44 | |
| PRK05858 | 542 | PRK05858, PRK05858, hypothetical protein; Provisio | 2e-42 | |
| cd02004 | 172 | cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate | 2e-42 | |
| COG0028 | 550 | COG0028, IlvB, Thiamine pyrophosphate-requiring en | 1e-41 | |
| TIGR00118 | 558 | TIGR00118, acolac_lg, acetolactate synthase, large | 1e-41 | |
| PRK08322 | 547 | PRK08322, PRK08322, acetolactate synthase; Reviewe | 8e-40 | |
| pfam00205 | 136 | pfam00205, TPP_enzyme_M, Thiamine pyrophosphate en | 2e-38 | |
| PRK08611 | 576 | PRK08611, PRK08611, pyruvate oxidase; Provisional | 4e-37 | |
| PRK08979 | 572 | PRK08979, PRK08979, acetolactate synthase 3 cataly | 5e-37 | |
| PRK09259 | 569 | PRK09259, PRK09259, putative oxalyl-CoA decarboxyl | 6e-37 | |
| PRK07979 | 574 | PRK07979, PRK07979, acetolactate synthase 3 cataly | 1e-36 | |
| PRK06725 | 570 | PRK06725, PRK06725, acetolactate synthase 3 cataly | 2e-36 | |
| PRK08155 | 564 | PRK08155, PRK08155, acetolactate synthase catalyti | 6e-35 | |
| TIGR03254 | 554 | TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | 1e-33 | |
| PRK06882 | 574 | PRK06882, PRK06882, acetolactate synthase 3 cataly | 1e-33 | |
| PRK06965 | 587 | PRK06965, PRK06965, acetolactate synthase 3 cataly | 2e-33 | |
| PRK08266 | 542 | PRK08266, PRK08266, hypothetical protein; Provisio | 7e-33 | |
| PRK06048 | 561 | PRK06048, PRK06048, acetolactate synthase 3 cataly | 8e-33 | |
| PRK06466 | 574 | PRK06466, PRK06466, acetolactate synthase 3 cataly | 1e-32 | |
| CHL00099 | 585 | CHL00099, ilvB, acetohydroxyacid synthase large su | 2e-32 | |
| PRK07282 | 566 | PRK07282, PRK07282, acetolactate synthase catalyti | 3e-32 | |
| PLN02470 | 585 | PLN02470, PLN02470, acetolactate synthase | 7e-32 | |
| PRK07789 | 612 | PRK07789, PRK07789, acetolactate synthase 1 cataly | 1e-30 | |
| PRK09259 | 569 | PRK09259, PRK09259, putative oxalyl-CoA decarboxyl | 2e-30 | |
| PRK06276 | 586 | PRK06276, PRK06276, acetolactate synthase catalyti | 3e-30 | |
| PRK08527 | 563 | PRK08527, PRK08527, acetolactate synthase 3 cataly | 2e-29 | |
| PRK06456 | 572 | PRK06456, PRK06456, acetolactate synthase catalyti | 3e-29 | |
| PRK08199 | 557 | PRK08199, PRK08199, thiamine pyrophosphate protein | 9e-28 | |
| TIGR03457 | 579 | TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acety | 1e-27 | |
| PRK09107 | 595 | PRK09107, PRK09107, acetolactate synthase 3 cataly | 1e-27 | |
| TIGR02418 | 539 | TIGR02418, acolac_catab, acetolactate synthase, ca | 2e-27 | |
| PRK08978 | 548 | PRK08978, PRK08978, acetolactate synthase 2 cataly | 4e-27 | |
| PRK07524 | 535 | PRK07524, PRK07524, hypothetical protein; Provisio | 5e-27 | |
| PRK07418 | 616 | PRK07418, PRK07418, acetolactate synthase 3 cataly | 5e-27 | |
| TIGR03254 | 554 | TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | 2e-26 | |
| PRK06112 | 578 | PRK06112, PRK06112, acetolactate synthase catalyti | 8e-26 | |
| PRK07710 | 571 | PRK07710, PRK07710, acetolactate synthase catalyti | 1e-25 | |
| PRK08617 | 552 | PRK08617, PRK08617, acetolactate synthase; Reviewe | 2e-25 | |
| PRK06154 | 565 | PRK06154, PRK06154, hypothetical protein; Provisio | 6e-25 | |
| cd07039 | 164 | cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding dom | 7e-24 | |
| PRK07525 | 588 | PRK07525, PRK07525, sulfoacetaldehyde acetyltransf | 1e-22 | |
| PRK06457 | 549 | PRK06457, PRK06457, pyruvate dehydrogenase; Provis | 4e-22 | |
| cd07039 | 164 | cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding dom | 1e-21 | |
| TIGR02720 | 575 | TIGR02720, pyruv_oxi_spxB, pyruvate oxidase | 1e-21 | |
| PRK05858 | 542 | PRK05858, PRK05858, hypothetical protein; Provisio | 3e-21 | |
| pfam02775 | 151 | pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en | 7e-21 | |
| COG0028 | 550 | COG0028, IlvB, Thiamine pyrophosphate-requiring en | 1e-20 | |
| PRK06466 | 574 | PRK06466, PRK06466, acetolactate synthase 3 cataly | 1e-20 | |
| TIGR00118 | 558 | TIGR00118, acolac_lg, acetolactate synthase, large | 3e-20 | |
| PRK08979 | 572 | PRK08979, PRK08979, acetolactate synthase 3 cataly | 4e-20 | |
| TIGR02418 | 539 | TIGR02418, acolac_catab, acetolactate synthase, ca | 4e-20 | |
| PRK06965 | 587 | PRK06965, PRK06965, acetolactate synthase 3 cataly | 9e-20 | |
| PRK09124 | 574 | PRK09124, PRK09124, pyruvate dehydrogenase; Provis | 2e-19 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 2e-19 | |
| PRK06882 | 574 | PRK06882, PRK06882, acetolactate synthase 3 cataly | 1e-18 | |
| PRK07064 | 544 | PRK07064, PRK07064, hypothetical protein; Provisio | 1e-18 | |
| PRK07979 | 574 | PRK07979, PRK07979, acetolactate synthase 3 cataly | 3e-18 | |
| PRK08617 | 552 | PRK08617, PRK08617, acetolactate synthase; Reviewe | 7e-18 | |
| PRK08322 | 547 | PRK08322, PRK08322, acetolactate synthase; Reviewe | 9e-18 | |
| cd02004 | 172 | cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate | 1e-17 | |
| PRK06725 | 570 | PRK06725, PRK06725, acetolactate synthase 3 cataly | 1e-17 | |
| PRK09107 | 595 | PRK09107, PRK09107, acetolactate synthase 3 cataly | 1e-17 | |
| PRK08327 | 569 | PRK08327, PRK08327, acetolactate synthase catalyti | 3e-17 | |
| PRK05858 | 542 | PRK05858, PRK05858, hypothetical protein; Provisio | 5e-17 | |
| COG3960 | 592 | COG3960, COG3960, Glyoxylate carboligase [General | 1e-16 | |
| PRK06456 | 572 | PRK06456, PRK06456, acetolactate synthase catalyti | 8e-16 | |
| COG3962 | 617 | COG3962, COG3962, Acetolactate synthase [Amino aci | 1e-15 | |
| TIGR01504 | 588 | TIGR01504, glyox_carbo_lig, glyoxylate carboligase | 1e-15 | |
| cd02015 | 186 | cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) fa | 4e-15 | |
| PRK07282 | 566 | PRK07282, PRK07282, acetolactate synthase catalyti | 6e-15 | |
| PRK07710 | 571 | PRK07710, PRK07710, acetolactate synthase catalyti | 8e-15 | |
| PLN02470 | 585 | PLN02470, PLN02470, acetolactate synthase | 2e-14 | |
| PRK08611 | 576 | PRK08611, PRK08611, pyruvate oxidase; Provisional | 3e-14 | |
| PRK08527 | 563 | PRK08527, PRK08527, acetolactate synthase 3 cataly | 5e-14 | |
| PRK08199 | 557 | PRK08199, PRK08199, thiamine pyrophosphate protein | 6e-14 | |
| PRK08266 | 542 | PRK08266, PRK08266, hypothetical protein; Provisio | 7e-14 | |
| PRK06048 | 561 | PRK06048, PRK06048, acetolactate synthase 3 cataly | 7e-14 | |
| PRK06276 | 586 | PRK06276, PRK06276, acetolactate synthase catalyti | 1e-13 | |
| PRK11269 | 591 | PRK11269, PRK11269, glyoxylate carboligase; Provis | 2e-13 | |
| PRK07524 | 535 | PRK07524, PRK07524, hypothetical protein; Provisio | 3e-13 | |
| PRK09259 | 569 | PRK09259, PRK09259, putative oxalyl-CoA decarboxyl | 4e-13 | |
| TIGR03254 | 554 | TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | 4e-13 | |
| PRK06546 | 578 | PRK06546, PRK06546, pyruvate dehydrogenase; Provis | 5e-13 | |
| cd02010 | 177 | cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) fam | 5e-13 | |
| TIGR03457 | 579 | TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acety | 3e-12 | |
| PRK08978 | 548 | PRK08978, PRK08978, acetolactate synthase 2 cataly | 3e-12 | |
| CHL00099 | 585 | CHL00099, ilvB, acetohydroxyacid synthase large su | 9e-12 | |
| PRK08155 | 564 | PRK08155, PRK08155, acetolactate synthase catalyti | 1e-11 | |
| PRK07525 | 588 | PRK07525, PRK07525, sulfoacetaldehyde acetyltransf | 1e-11 | |
| PRK08617 | 552 | PRK08617, PRK08617, acetolactate synthase; Reviewe | 2e-11 | |
| cd02014 | 178 | cd02014, TPP_POX, Thiamine pyrophosphate (TPP) fam | 2e-11 | |
| PRK08199 | 557 | PRK08199, PRK08199, thiamine pyrophosphate protein | 4e-11 | |
| TIGR02418 | 539 | TIGR02418, acolac_catab, acetolactate synthase, ca | 7e-11 | |
| PRK07418 | 616 | PRK07418, PRK07418, acetolactate synthase 3 cataly | 1e-10 | |
| cd06586 | 154 | cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding | 2e-10 | |
| PRK07789 | 612 | PRK07789, PRK07789, acetolactate synthase 1 cataly | 3e-10 | |
| TIGR00118 | 558 | TIGR00118, acolac_lg, acetolactate synthase, large | 6e-10 | |
| PRK07418 | 616 | PRK07418, PRK07418, acetolactate synthase 3 cataly | 7e-10 | |
| cd02013 | 196 | cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP | 9e-10 | |
| PRK06112 | 578 | PRK06112, PRK06112, acetolactate synthase catalyti | 1e-09 | |
| PRK06457 | 549 | PRK06457, PRK06457, pyruvate dehydrogenase; Provis | 2e-09 | |
| PRK07979 | 574 | PRK07979, PRK07979, acetolactate synthase 3 cataly | 3e-09 | |
| PRK08266 | 542 | PRK08266, PRK08266, hypothetical protein; Provisio | 3e-09 | |
| cd02005 | 183 | cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP | 3e-09 | |
| PRK06154 | 565 | PRK06154, PRK06154, hypothetical protein; Provisio | 4e-09 | |
| cd02002 | 178 | cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa | 4e-09 | |
| PRK08322 | 547 | PRK08322, PRK08322, acetolactate synthase; Reviewe | 5e-09 | |
| TIGR02720 | 575 | TIGR02720, pyruv_oxi_spxB, pyruvate oxidase | 5e-09 | |
| PRK06112 | 578 | PRK06112, PRK06112, acetolactate synthase catalyti | 6e-09 | |
| PRK07525 | 588 | PRK07525, PRK07525, sulfoacetaldehyde acetyltransf | 9e-09 | |
| cd06586 | 154 | cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding | 9e-09 | |
| PRK06882 | 574 | PRK06882, PRK06882, acetolactate synthase 3 cataly | 1e-08 | |
| PRK06466 | 574 | PRK06466, PRK06466, acetolactate synthase 3 cataly | 2e-08 | |
| PRK06546 | 578 | PRK06546, PRK06546, pyruvate dehydrogenase; Provis | 2e-08 | |
| COG3961 | 557 | COG3961, COG3961, Pyruvate decarboxylase and relat | 3e-08 | |
| PRK08527 | 563 | PRK08527, PRK08527, acetolactate synthase 3 cataly | 6e-08 | |
| PRK06154 | 565 | PRK06154, PRK06154, hypothetical protein; Provisio | 7e-08 | |
| PRK08978 | 548 | PRK08978, PRK08978, acetolactate synthase 2 cataly | 8e-08 | |
| PRK09124 | 574 | PRK09124, PRK09124, pyruvate dehydrogenase; Provis | 8e-08 | |
| PRK08155 | 564 | PRK08155, PRK08155, acetolactate synthase catalyti | 1e-07 | |
| PRK08979 | 572 | PRK08979, PRK08979, acetolactate synthase 3 cataly | 2e-07 | |
| PRK06276 | 586 | PRK06276, PRK06276, acetolactate synthase catalyti | 2e-07 | |
| TIGR03457 | 579 | TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acety | 2e-07 | |
| CHL00099 | 585 | CHL00099, ilvB, acetohydroxyacid synthase large su | 4e-07 | |
| PRK07524 | 535 | PRK07524, PRK07524, hypothetical protein; Provisio | 4e-07 | |
| PRK07092 | 530 | PRK07092, PRK07092, benzoylformate decarboxylase; | 7e-07 | |
| PRK06725 | 570 | PRK06725, PRK06725, acetolactate synthase 3 cataly | 2e-06 | |
| PRK08611 | 576 | PRK08611, PRK08611, pyruvate oxidase; Provisional | 3e-06 | |
| PRK06048 | 561 | PRK06048, PRK06048, acetolactate synthase 3 cataly | 3e-06 | |
| COG3960 | 592 | COG3960, COG3960, Glyoxylate carboligase [General | 3e-06 | |
| PRK07064 | 544 | PRK07064, PRK07064, hypothetical protein; Provisio | 6e-06 | |
| PRK06965 | 587 | PRK06965, PRK06965, acetolactate synthase 3 cataly | 1e-05 | |
| cd02006 | 202 | cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) fam | 1e-05 | |
| PRK09107 | 595 | PRK09107, PRK09107, acetolactate synthase 3 cataly | 2e-05 | |
| PLN02470 | 585 | PLN02470, PLN02470, acetolactate synthase | 3e-05 | |
| TIGR01504 | 588 | TIGR01504, glyox_carbo_lig, glyoxylate carboligase | 3e-05 | |
| PRK06456 | 572 | PRK06456, PRK06456, acetolactate synthase catalyti | 4e-05 | |
| PRK08327 | 569 | PRK08327, PRK08327, acetolactate synthase catalyti | 6e-05 | |
| PRK08273 | 597 | PRK08273, PRK08273, thiamine pyrophosphate protein | 7e-05 | |
| PRK07710 | 571 | PRK07710, PRK07710, acetolactate synthase catalyti | 8e-05 | |
| PRK07586 | 514 | PRK07586, PRK07586, hypothetical protein; Validate | 8e-05 | |
| pfam02775 | 151 | pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en | 9e-05 | |
| COG3961 | 557 | COG3961, COG3961, Pyruvate decarboxylase and relat | 1e-04 | |
| PRK08273 | 597 | PRK08273, PRK08273, thiamine pyrophosphate protein | 1e-04 | |
| TIGR01504 | 588 | TIGR01504, glyox_carbo_lig, glyoxylate carboligase | 2e-04 | |
| PRK12474 | 518 | PRK12474, PRK12474, hypothetical protein; Provisio | 2e-04 | |
| COG0028 | 550 | COG0028, IlvB, Thiamine pyrophosphate-requiring en | 3e-04 | |
| COG3960 | 592 | COG3960, COG3960, Glyoxylate carboligase [General | 3e-04 | |
| PRK06457 | 549 | PRK06457, PRK06457, pyruvate dehydrogenase; Provis | 4e-04 | |
| TIGR02720 | 575 | TIGR02720, pyruv_oxi_spxB, pyruvate oxidase | 4e-04 | |
| PRK11269 | 591 | PRK11269, PRK11269, glyoxylate carboligase; Provis | 4e-04 | |
| cd07038 | 162 | cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) b | 5e-04 | |
| cd07038 | 162 | cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) b | 5e-04 | |
| TIGR03394 | 535 | TIGR03394, indol_phenyl_DC, indolepyruvate/phenylp | 6e-04 | |
| PRK07282 | 566 | PRK07282, PRK07282, acetolactate synthase catalyti | 0.001 | |
| PRK07064 | 544 | PRK07064, PRK07064, hypothetical protein; Provisio | 0.001 | |
| PRK06546 | 578 | PRK06546, PRK06546, pyruvate dehydrogenase; Provis | 0.001 | |
| TIGR00173 | 430 | TIGR00173, menD, 2-succinyl-5-enolpyruvyl-6-hydrox | 0.001 | |
| PRK08327 | 569 | PRK08327, PRK08327, acetolactate synthase catalyti | 0.002 | |
| PRK12474 | 518 | PRK12474, PRK12474, hypothetical protein; Provisio | 0.002 |
| >gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 308 bits (792), Expect = 2e-93
Identities = 145/383 (37%), Positives = 216/383 (56%), Gaps = 43/383 (11%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
++ ALK GI+ ++G+VGIP+ +LA Q EGI YIG R+EQ+A AA A G+LT+KP
Sbjct: 14 HLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKP 73
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI----GGFQECPQVELARP 386
GVCL VS PG L+ +ANA NC+PM++I GS + E + G ++E Q+ A+P
Sbjct: 74 GVCLTVSAPGFLNGLTALANATTNCFPMIMISGS--SEREIVDLQQGDYEELDQLNAAKP 131
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
+CK + R IG V +A+R + G+PG YLD PA +LAQ ++
Sbjct: 132 FCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADE---------- 181
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPW-PGIAELKQASRLILEAKAPLVI 505
A LV KV++P P + +A L+ +AK PL+I
Sbjct: 182 -------------------ALTSLV---KVVDPAPAQLPAPEAVDRALDLLKKAKRPLII 219
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
+GKGAAY+QA+ ++ FV +PFLP M KG++PD HP +AAR+ AL NAD+VLL+
Sbjct: 220 LGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLV 279
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHT 625
GARLNW+L G+ + ++ K IQ+D+ +E+ ++ A + D+ +Q L L+
Sbjct: 280 GARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQAL---LAGL 336
Query: 626 QRNWSFSATSPWWQELKLKCQTN 648
++N F A + W L + + N
Sbjct: 337 KQNT-FKAPAEWLDALAERKEKN 358
|
Length = 569 |
| >gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 1e-88
Identities = 167/509 (32%), Positives = 248/509 (48%), Gaps = 80/509 (15%)
Query: 272 VIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPG 331
++ ALK GI ++G+VGIPV +LA Q +G+ YIG R+EQ+A YAA A G+LT+KPG
Sbjct: 8 LVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPG 67
Query: 332 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI----GGFQECPQVELARPY 387
VCL VS PG L+ +ANA NC+PM++I GS + + G ++E Q+ A+P+
Sbjct: 68 VCLTVSAPGFLNGLTALANATTNCFPMIMISGS--SERHIVDLQQGDYEEMDQLAAAKPF 125
Query: 388 CKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRIN-QSALVPTPKVLEP 446
K + R IG + +A+R + G+PG YLD PA +L Q + + A KV++P
Sbjct: 126 AKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEKAKKTLVKVVDP 185
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
AP + P + +A L+ +AK PL+++
Sbjct: 186 ---------------------APKQL-----------PSPDSVDRAVELLKDAKRPLILL 213
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLG 566
GKGAAY+QA+ E+ FV +PFLP M KG++PD HP +AAR+ AL AD+V+L+G
Sbjct: 214 GKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVG 273
Query: 567 ARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQ 626
ARLNW+L G+ + + K IQVD+ E+ ++ A + D+ VQ +LS +
Sbjct: 274 ARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQ---ALLSAAK 330
Query: 627 RNWSFSATSPWWQELKLKCQTNRQVKLPVILVIVNNNGIYGGFD-------ETTYASIVE 679
+ W +K K + N + + +G + + +V
Sbjct: 331 NGG-VKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVN 389
Query: 680 SGEVTTVL---------PVILVIVNNNGIYGGFDETTYASIVESG--------------- 715
G T L P + V G+ G A+ VE+G
Sbjct: 390 EGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALEGDSAFGFS 449
Query: 716 --EVTTV----LPVILVIVNNNGIYGGFD 738
EV T+ LPV +VI NN GIY G D
Sbjct: 450 GMEVETICRYNLPVCVVIFNNGGIYRGDD 478
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase [Cellular processes, Detoxification]. Length = 554 |
| >gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 1e-84
Identities = 106/371 (28%), Positives = 165/371 (44%), Gaps = 43/371 (11%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
++ + + +AL+ G++ VFGI G ++ L A GI +I +R+EQ A +AA
Sbjct: 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYAR 60
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
T KPGVCLV SGPG + G+A+A ++ P+L I G G FQE QV L R
Sbjct: 61 ATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFR 120
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P KY+ + I + V +A R++ G+PG +D P ++LA P P+
Sbjct: 121 PITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAE----EPGPEPAI 176
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P + +++A+ L+ EAK P+++
Sbjct: 177 LPPYRPAPPPPEA------------------------------IRKAAELLAEAKRPVIL 206
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQN 558
G G + A EL P + T MGKG VP+ HP + H AL+
Sbjct: 207 AGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALEE 266
Query: 559 ADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
ADL+L +GAR + + F II +D++ E+ + V I D + T++ L
Sbjct: 267 ADLLLAVGARFDDRVTGYSG--FAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKATLEAL 324
Query: 619 KQMLSHTQRNW 629
+ L + W
Sbjct: 325 LEELKPERAAW 335
|
Length = 550 |
| >gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 1e-50
Identities = 62/155 (40%), Positives = 88/155 (56%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
+ +ALK +G+++VFG+ G ++ L A + GI YI +R+EQ A A T KP
Sbjct: 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKP 60
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 390
GV LV SGPGL + G+ANA ++ P+LVI G EG G FQE QV L RP K+
Sbjct: 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW 120
Query: 391 SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425
+ R + I + + +A R++ G+PG LD P
Sbjct: 121 AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many the active sites lie between PP and PYR domains on different subunits. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. This subfamily includes pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC catalyzes the conversion of pyruvate to acetaldehyde and CO2 in alcoholic fermentation. IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway in plants and various plant-associated bacteria, it catalyzes the decarboxylation of IPA to IAA. This subfamily also includes the large catalytic subunit of acetohydroxyacid synthase (AHAS). AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate, a precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. Methanococcus jannaschii sulfopyruvate decarboxylase (MjComDE) and phosphonopyruvate decarboxylase (PpyrDc) also belong to this subfamily. PpyrDc is a homotrimeric enzyme having the PP and PYR domains tandemly arranged on the same subunit. It functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. MjComDE is a dodecamer having the PYR and PP domains on different subunits, it has six alpha (PYR/ComD) subunits and six beta (PP/ComE) subunits. MjComDE catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Length = 155 |
| >gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 5e-49
Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKK 329
+A+ALK G+++VFG+ G ++ L A + GI Y+ R+EQ A +AA T K
Sbjct: 5 DALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARATGK 64
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYC 388
PGV LV SGPG + G+ANA ++ P+LVI G G GG Q E Q+ L RP
Sbjct: 65 PGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALFRPVT 124
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
K++ R + I + +++A R + G+PG YL+ P ++ + +++
Sbjct: 125 KWAERVTSPDEIPEALDRAFRAALSGRPGPVYLELPLDVQLEEVDEPE 172
|
Length = 172 |
| >gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-48
Identities = 59/147 (40%), Positives = 85/147 (57%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
+ +ALK +G+++VFG+ G ++ L A + GI YI +R+EQ A A T KP
Sbjct: 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKP 60
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 132
GV LV SGPGL + G+ANA ++ P+LVI G EG G FQE QV L RP K+
Sbjct: 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW 120
Query: 133 SARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ R + I + + +A R++ G+PG
Sbjct: 121 AYRVTSPEEIPEALRRAFRIALSGRPG 147
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many the active sites lie between PP and PYR domains on different subunits. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. This subfamily includes pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC catalyzes the conversion of pyruvate to acetaldehyde and CO2 in alcoholic fermentation. IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway in plants and various plant-associated bacteria, it catalyzes the decarboxylation of IPA to IAA. This subfamily also includes the large catalytic subunit of acetohydroxyacid synthase (AHAS). AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate, a precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. Methanococcus jannaschii sulfopyruvate decarboxylase (MjComDE) and phosphonopyruvate decarboxylase (PpyrDc) also belong to this subfamily. PpyrDc is a homotrimeric enzyme having the PP and PYR domains tandemly arranged on the same subunit. It functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. MjComDE is a dodecamer having the PYR and PP domains on different subunits, it has six alpha (PYR/ComD) subunits and six beta (PP/ComE) subunits. MjComDE catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Length = 155 |
| >gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 2e-44
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKK 71
+A+ALK G+++VFG+ G ++ L A + GI Y+ R+EQ A +AA T K
Sbjct: 5 DALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARATGK 64
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYC 130
PGV LV SGPG + G+ANA ++ P+LVI G G GG Q E Q+ L RP
Sbjct: 65 PGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALFRPVT 124
Query: 131 KYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRH 170
K++ R + I + +++A R + G+PG L LP
Sbjct: 125 KWAERVTSPDEIPEALDRAFRAALSGRPGPVYL--ELPLD 162
|
Length = 172 |
| >gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 2e-42
Identities = 98/353 (27%), Positives = 160/353 (45%), Gaps = 37/353 (10%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
A ++ A+ LK G++ +F + G + L ++EGI I +R+EQ A +AA+A
Sbjct: 4 TGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAK 63
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
LT+ PGV ++ +GPG+ + MA AQ N P++V+GG G+G QE V
Sbjct: 64 LTRVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVA 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K++A + G+ V++A++ + G ++DFP + + + P L
Sbjct: 124 PVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA---FSMADDDGRPGAL- 179
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
LP PT P L +A+ L+ EA+ P+++
Sbjct: 180 TELP---------------------------AGPT---PDPDALARAAGLLAEAQRPVIM 209
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLL 565
G + AE LL +P L MG+GVVP HP S AR AL AD+VL++
Sbjct: 210 AGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVV 269
Query: 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
G +++ L FG F +++ VD + + A + D+ + L
Sbjct: 270 GVPMDFRLGFG---VFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL 319
|
Length = 542 |
| >gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-42
Identities = 55/92 (59%), Positives = 66/92 (71%), Gaps = 4/92 (4%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
R +L PRHRLDAGTFGT+GVGLG+A+AAAL P KRVV V+GD AFGFSGME
Sbjct: 29 ARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFSGME 84
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFDEATYAW 250
LET VRY LP+++V+ NN G Y G D ++
Sbjct: 85 LETAVRYNLPIVVVVGNNGGWYQGLDGQQLSY 116
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. Length = 172 |
| >gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-41
Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
++ + + +AL+ G++ VFGI G ++ L A GI +I +R+EQ A +AA
Sbjct: 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYAR 60
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
T KPGVCLV SGPG + G+A+A ++ P+L I G G FQE QV L R
Sbjct: 61 ATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFR 120
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
P KY+ + I + V +A R++ G+PG ++ +LP+
Sbjct: 121 PITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVV--DLPK 160
|
Length = 550 |
| >gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 1e-41
Identities = 100/388 (25%), Positives = 168/388 (43%), Gaps = 56/388 (14%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGY 325
+S + I ++LK +G++ VFG G ++ + A + GI +I +R+EQ A +AA
Sbjct: 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYAR 60
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
+ K GV LV SGPG + G+A A ++ PM+V G G FQE + +
Sbjct: 61 ASGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITM 120
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
P K+S + + I + +++A ++T G+PG +D P ++ I
Sbjct: 121 PITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIE------------ 168
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P+P L P P ++K+A+ LI AK P+++
Sbjct: 169 --YPYPEKVNLP--------GYRP---------TVKGHPL--QIKKAAELINLAKKPVIL 207
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQN 558
+G G + A EL +P T MG G P+ HP + H A+
Sbjct: 208 VGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHE 267
Query: 559 ADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
DL++ +GAR F G +F N KII +D++ E+ +V+ + I D R
Sbjct: 268 CDLIIAVGAR------FDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARN 321
Query: 614 TVQQLKQMLSHTQRNWSFSATSPWWQEL 641
+++L + L S W +++
Sbjct: 322 VLEELLKKL----FELKERKESAWLEQI 345
|
Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this model also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed [Amino acid biosynthesis, Pyruvate family]. Length = 558 |
| >gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 8e-40
Identities = 103/379 (27%), Positives = 164/379 (43%), Gaps = 55/379 (14%)
Query: 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 328
A + + L+ +G+EY+FGI G ++L A + I I R+EQ A + A G LT
Sbjct: 3 AADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTG 62
Query: 329 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC 388
K GVCL GPG + G+A AQ+ PM+ I G G FQ V + P
Sbjct: 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLT 122
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP-KVLEPT 447
K++ + + I + V +A RL+ +PG +L+ P ++ A+ T K L +
Sbjct: 123 KWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAAE--------ETDGKPLPRS 174
Query: 448 LPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIG 507
A K +++A+ I AK PL++IG
Sbjct: 175 YSRRPYASPKA------------------------------IERAAEAIQAAKNPLILIG 204
Query: 508 KGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQNAD 560
GA A L FV+ +PF T MGKGV+P+ HP + A A+++AD
Sbjct: 205 AGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIEHAD 264
Query: 561 LVLLLGARLNWILHFGRAPRF---KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
L++ +G + + P F + K+I ++ E+ V + D+ ++ Q
Sbjct: 265 LIINVGHDV-----IEKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQ 319
Query: 618 LKQMLSHTQRNWSFSATSP 636
LK+ L+ Q +W F
Sbjct: 320 LKERLA-DQPHWDFPRFLK 337
|
Length = 547 |
| >gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central domain | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-38
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV 548
+ +A+ L+ AK P+++ G G S A EL + +P + T MGKG P+ HP +
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 549 -------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSV 601
+ A AL+ ADLVL +GAR + G P F + KII +D++ E+ +
Sbjct: 61 GMLGMHGTPAANEALEEADLVLAIGARFDD-RGTGSLPEFAPDAKIIHIDIDPAEIGKNY 119
Query: 602 QAAVAIQSDVRLTVQQL 618
V I D + ++ L
Sbjct: 120 PVDVPIVGDAKEALEAL 136
|
The central domain of TPP enzymes contains a 2-fold Rossman fold. Length = 136 |
| >gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 4e-37
Identities = 98/392 (25%), Positives = 175/392 (44%), Gaps = 66/392 (16%)
Query: 269 ANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
A + + + L+ GI++V+GI G + + A+ +Q+ I +I +R+E+ A AA A L
Sbjct: 6 AGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKL 65
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
T K GVCL + GPG +H G+ +A+++ P+L + G D G FQE ++
Sbjct: 66 TGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFED 125
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
Y+ + + + + V +A+R + + K GV+ L P +L AQ+I +
Sbjct: 126 VAVYNHQIMSAENLPEIVNQAIR-TAYEKKGVAVLTIPDDLPAQKIKDTTNKTVDTF--- 181
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
PT+P P ++K+A++LI +AK P+++
Sbjct: 182 -------------------------------RPTVPSPKPKDIKKAAKLINKAKKPVILA 210
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQNA 559
G GA A+ ELL+F +P + T KG++PD HP + + A+Q A
Sbjct: 211 GLGA--KHAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEA 268
Query: 560 DLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL- 618
DL++++G ++ K IQ+D + + V + D + + QL
Sbjct: 269 DLLIMVGT------NYPYVDYLPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLT 322
Query: 619 --------KQMLSHTQRNWSFSATSPWWQELK 642
++ L Q N + WW+ ++
Sbjct: 323 ENIKHVEDRRFLEACQEN-----MAKWWKWME 349
|
Length = 576 |
| >gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 5e-37
Identities = 101/390 (25%), Positives = 178/390 (45%), Gaps = 48/390 (12%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAI 323
E LS +I ++L +G++++FG G V+++ A ++ GI +I +R+EQAA + A
Sbjct: 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGY 61
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T K GV LV SGPG +T G+A A ++ PM+V+ G + G FQEC + +
Sbjct: 62 ARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+RP K+S + I + ++KA +++ G+PG +D P +
Sbjct: 122 SRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD----------------C 165
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
L P ++ + P I + PT ++K+ + +L AK P+
Sbjct: 166 LNP--------------AILHPYEYPESIKMRSYNPTTSGHK-GQIKRGLQALLAAKKPV 210
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------AL 556
+ +G GA S A+ ++L NLP + T MG G P H N + H A+
Sbjct: 211 LYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMAM 270
Query: 557 QNADLVLLLGARLNWILHFGRAP----RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVR 612
NADL+ +G R + R ++ N I+ +D++ + +V+ + I
Sbjct: 271 HNADLIFGIGVRFD-----DRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSAD 325
Query: 613 LTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ + +L + +A + WW E++
Sbjct: 326 KVLDSMLALLDESGETNDEAAIASWWNEIE 355
|
Length = 572 |
| >gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 6e-37
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
++ ALK GI+ ++G+VGIP+ +LA Q EGI YIG R+EQ+A AA A G+LT+KP
Sbjct: 14 HLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKP 73
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI----GGFQECPQVELARP 128
GVCL VS PG L+ +ANA NC+PM++I GS + E + G ++E Q+ A+P
Sbjct: 74 GVCLTVSAPGFLNGLTALANATTNCFPMIMISGS--SEREIVDLQQGDYEELDQLNAAKP 131
Query: 129 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+CK + R IG V +A+R + G+PG
Sbjct: 132 FCKAAFRVNRAEDIGIGVARAIRTAVSGRPG 162
|
Length = 569 |
| >gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-36
Identities = 101/386 (26%), Positives = 176/386 (45%), Gaps = 40/386 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAI 323
E LS +++ ++L QG++ VFG G V+++ A GI ++ +R+EQAA + A +
Sbjct: 2 EMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGL 61
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T + GV LV SGPG + G+A A ++ P++V+ G A G FQEC V +
Sbjct: 62 ARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGI 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+RP K+S I Q ++KA L+ G+PG +D P ++L P
Sbjct: 122 SRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL-----------NPAN 170
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
P + WP ++ + K ++K+A + ++ AK P+
Sbjct: 171 KLPYV-WPESVSMRSYNPTTQGHK-------------------GQIKRALQTLVAAKKPV 210
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------AL 556
V +G GA + +L V NLP + + MG G P H + H +
Sbjct: 211 VYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTM 270
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
NAD++ +G R + A ++ N ++ +D++ + +V A + I D R ++
Sbjct: 271 HNADVIFAVGVRFDDRTTNNLA-KYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLE 329
Query: 617 QLKQMLSHTQRNWSFSATSPWWQELK 642
Q+ ++LS + WWQ+++
Sbjct: 330 QMLELLSQESAHQPLDEIRDWWQQIE 355
|
Length = 574 |
| >gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-36
Identities = 102/386 (26%), Positives = 173/386 (44%), Gaps = 41/386 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
EE++ + Q LK G+ VFG G ++ + A + G+ +I R+EQAA +AA+
Sbjct: 13 EEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYA 72
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
+ K GV SGPG + G+A+A ++ P++VI G A G GFQE V +
Sbjct: 73 RASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGIT 132
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
P K++ + +++ + + V++A ++ G+PG +D P ++ +++
Sbjct: 133 VPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKV------------ 180
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
T + + E I G EP P +L++ ++ I +AK PL+
Sbjct: 181 --TSFYNEVVE----------------IPGYKPEPR---PDSMKLREVAKAISKAKRPLL 219
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQ 557
IG G +S EL+ F +P + T MG G P P + H A+
Sbjct: 220 YIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVT 279
Query: 558 NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
DL+L LG R + + G+ F + K + +D++ E H +V + DV+ +
Sbjct: 280 ECDLLLALGVRFDDRVT-GKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHM 338
Query: 618 LKQMLSHTQRNWSFSATSPWWQELKL 643
L M HTQ + W +E L
Sbjct: 339 LLHMSIHTQTDEWLQKVKTWKEEYPL 364
|
Length = 570 |
| >gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 6e-35
Identities = 106/374 (28%), Positives = 165/374 (44%), Gaps = 45/374 (12%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAI 323
+ + ++I + L+ QGI V GI G ++ L A Q I +I R+EQ A + AQ +
Sbjct: 11 KRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGM 70
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T KP VC+ SGPG + +A+A+++ P++ I G G FQE +
Sbjct: 71 ARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGI 130
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+ P K++ +I + Q + A R++ G+PG ++D P ++ I A
Sbjct: 131 SIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQTAVIELEA------- 183
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
P AE A P ++ A+ +I AK P+
Sbjct: 184 ------LPAPAEKDAA----------------------PAFDEESIRDAAAMINAAKRPV 215
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-----AART--HAL 556
+ +G G S A LP T M G++P AHP + AR+ + L
Sbjct: 216 LYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYIL 275
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
Q ADL+++LGAR + G+ +F N KII VD++ EL Q VAIQ+DV +
Sbjct: 276 QEADLLIVLGARFD-DRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLA 334
Query: 617 QLKQMLSHTQR-NW 629
QL ++ R W
Sbjct: 335 QLLPLVEAQPRAEW 348
|
Length = 564 |
| >gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 1e-33
Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 6/150 (4%)
Query: 14 VIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPG 73
++ ALK GI ++G+VGIPV +LA Q +G+ YIG R+EQ+A YAA A G+LT+KPG
Sbjct: 8 LVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPG 67
Query: 74 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI----GGFQECPQVELARPY 129
VCL VS PG L+ +ANA NC+PM++I GS + + G ++E Q+ A+P+
Sbjct: 68 VCLTVSAPGFLNGLTALANATTNCFPMIMISGS--SERHIVDLQQGDYEEMDQLAAAKPF 125
Query: 130 CKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
K + R IG + +A+R + G+PG
Sbjct: 126 AKAAYRVLRAEDIGIGIARAIRTAVSGRPG 155
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase [Cellular processes, Detoxification]. Length = 554 |
| >gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 1e-33
Identities = 96/385 (24%), Positives = 175/385 (45%), Gaps = 40/385 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAI 323
++LS +++ Q+L+ +G+EYVFG G V+++ A GI ++ +R+EQAA + A
Sbjct: 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGY 61
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T K G LV SGPG + G+A A + P++++ G + G FQEC + +
Sbjct: 62 ARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+RP K+S N I ++KA +++ G+PG +D P +++ P K
Sbjct: 122 SRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDMVN---------PANKF 172
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
T +P L+ + + K ++K+A + +L AK P+
Sbjct: 173 ---TYEYPEEVSLRSYNPTVQGHK-------------------GQIKKALKALLVAKKPV 210
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------AL 556
+ +G G ++ +L F NLP + MG G P + H A+
Sbjct: 211 LFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAM 270
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
+DL+L +G R + A ++ N K+I +D++ + +V A + I + ++
Sbjct: 271 HESDLILGIGVRFDDRTTNNLA-KYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLE 329
Query: 617 QLKQMLSHTQRNWSFSATSPWWQEL 641
+ +L S + + WWQ++
Sbjct: 330 EFLSLLEEENLAKSQTDLTAWWQQI 354
|
Length = 574 |
| >gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-33
Identities = 96/392 (24%), Positives = 175/392 (44%), Gaps = 51/392 (13%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 322
+ +++ +AL +G+E+++G G V+ + +Q+ I ++ +R+EQAA +AA
Sbjct: 18 AADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADG 77
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
T K GV LV SGPG+ + G+A A ++ PM+VI G G FQEC V
Sbjct: 78 YARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVG 137
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ RP K++ ++ + + V+KA ++ G+PG +D P ++ + P
Sbjct: 138 ITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV--------SKTPCE- 188
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
+P E++ + P ++++A L+L AK P
Sbjct: 189 -----YEYPKSVEMRSYN------------------PVTKGHS-GQIRKAVSLLLSAKRP 224
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------A 555
+ G G + A EL + P T MG G P + + H A
Sbjct: 225 YIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMA 284
Query: 556 LQNADLVLLLGARLNWIL-----HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSD 610
+Q+ D+++ +GAR + + HF PR KII +D++ + V+ + I D
Sbjct: 285 MQHCDVLIAIGARFDDRVIGNPAHFASRPR-----KIIHIDIDPSSISKRVKVDIPIVGD 339
Query: 611 VRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
V+ +++L + L + A + WW++++
Sbjct: 340 VKEVLKELIEQLQTAEHGPDADALAQWWKQIE 371
|
Length = 587 |
| >gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 7e-33
Identities = 95/390 (24%), Positives = 149/390 (38%), Gaps = 56/390 (14%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
++ + I L G++ VFG+ G + L A+ + I I R+EQAA Y A
Sbjct: 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFG 61
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP- 379
T +PGVC VV GPG+L+ + A P+L + G +G G E P
Sbjct: 62 YARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121
Query: 380 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVP 439
Q+ R + K++ R + V +A + G+P L+ P ++ QR +A P
Sbjct: 122 QLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVFGQRAPVAAAPP 181
Query: 440 TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499
P IA A+ LI A
Sbjct: 182 LRPAPPPAPDPDAIAA------------------------------------AAALIAAA 205
Query: 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP---NCVSAARTHAL 556
K P++ +G GAA A E+ P + G+G+V D HP N +A
Sbjct: 206 KNPMIFVGGGAA--GAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAYEL--W 261
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
D+V+ +G+RL L R P +K+I++D++ E ++ VAI +D +
Sbjct: 262 PQTDVVIGIGSRL--ELPTFRWPWRPDGLKVIRIDIDPTE-MRRLKPDVAIVADAKAGTA 318
Query: 617 QLKQMLS-----HTQRNWSFSATSPWWQEL 641
L LS R ++
Sbjct: 319 ALLDALSKAGSKRPSRRAELRELKAAARQR 348
|
Length = 542 |
| >gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 8e-33
Identities = 97/397 (24%), Positives = 178/397 (44%), Gaps = 41/397 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
E+++ + I + L+ +G+E +FG G +I + + +I +R+EQAA +AA
Sbjct: 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYA 65
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
T K GVC+ SGPG + G+A A ++ P++ + G + G FQE +
Sbjct: 66 RATGKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGIT 125
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
P K++ + + + +++A +++ G+PG +D P ++ I+
Sbjct: 126 MPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEID----------- 174
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
+P EL+ +PT ++K+A+ LI++A+ P++
Sbjct: 175 ---FDYPDKVELRG------------------YKPTYK-GNPQQIKRAAELIMKAERPII 212
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQ 557
G G S A EL+ + P T MG G +P HP + H A+Q
Sbjct: 213 YAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQ 272
Query: 558 NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
+DL++ +GAR + + G+ F N KII +D++ E+ +V+ V I D + ++
Sbjct: 273 ESDLIIAVGARFDDRVT-GKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKS 331
Query: 618 LKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654
L + + + R + W +E LK + V P
Sbjct: 332 LIKYVQYCDRKEWLDKINQWKKEYPLKYKEREDVIKP 368
|
Length = 561 |
| >gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 1e-32
Identities = 99/385 (25%), Positives = 174/385 (45%), Gaps = 40/385 (10%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAI 323
E LS +++ +AL+ +G+EY++G G V+ + A +Q+ + +I +R+EQAA + A
Sbjct: 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGY 61
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
T K GV LV SGPG + G+A A ++ PM+V+ G G FQE V +
Sbjct: 62 ARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGI 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+RP K+S + I + ++KA ++ G+PG +D P ++ P K
Sbjct: 122 SRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMTN---------PAEKF 172
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
+P +L+ S P + ++++A ++L AK P+
Sbjct: 173 ---EYEYPKKVKLRSYS------------------PAVRGHS-GQIRKAVEMLLAAKRPV 210
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------AL 556
+ G G A L + NLP T MG G P + H A+
Sbjct: 211 IYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAM 270
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
+AD++L +GAR + + G +F N KII +D++ + +++A + I V +
Sbjct: 271 HHADVILAVGARFDDRVTNG-PAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLT 329
Query: 617 QLKQMLSHTQRNWSFSATSPWWQEL 641
++ +L A + WW+++
Sbjct: 330 EMLAILKEIGEKPDKEALAAWWKQI 354
|
Length = 574 |
| >gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 99/378 (26%), Positives = 170/378 (44%), Gaps = 51/378 (13%)
Query: 281 GIEYVFGIVG---IPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVV 336
G++++FG G +P+ + A +++G I +I +R+EQ A +AA T K GVC
Sbjct: 24 GVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFAT 83
Query: 337 SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPN 396
SGPG + G+A AQ++ P+LVI G + G FQE + P K+S +
Sbjct: 84 SGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRD 143
Query: 397 IHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAEL 456
I + V +A ++ G+PG +D P ++ ++ + P + L I +
Sbjct: 144 ARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYYPPEP-GNTIIKILGCRPIYKP 202
Query: 457 KQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAE 516
I ++QA++LIL++ PL+ +G GA S A
Sbjct: 203 T----------------------------IKRIEQAAKLILQSSQPLLYVGGGAIISDAH 234
Query: 517 TELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQNADLVLLLGARL 569
E+ + +P T MGKG+ + HP C+ +A A+ DL++ LGAR
Sbjct: 235 QEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGAR- 293
Query: 570 NWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSH 624
F G+ F N ++I +D++ E+ + VAI DV+ +Q+L ++L +
Sbjct: 294 -----FDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKN 348
Query: 625 TQRNWSFSATSPWWQELK 642
+ T W + +
Sbjct: 349 SPNLLESEQTQAWRERIN 366
|
Length = 585 |
| >gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 3e-32
Identities = 94/363 (25%), Positives = 168/363 (46%), Gaps = 42/363 (11%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 322
+ S + ++ + L+ G++ +FG G V+ L A EGI +I R+EQ A + A+
Sbjct: 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEG 66
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
T K GV +V SGPG + G+A+A + P+LV G A+ G FQE V
Sbjct: 67 YAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVG 126
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ P KY+ + I + + +AV ++T G+PG +D P ++ A T
Sbjct: 127 ITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVSALE--------TDF 178
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
+ +P + P + + + ++ K+ LKQ S+ AK P
Sbjct: 179 IYDPEVNLPSYQPTLEPNDMQIK---------KI------------LKQLSK----AKKP 213
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------A 555
+++ G G Y++A TEL +F + +P + T +G+G + +HP + H A
Sbjct: 214 VILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIA 273
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
+ AD ++ +G+R + L G F N K+ +D++ E+ ++ + + D + +
Sbjct: 274 MTEADFMINIGSRFDDRL-TGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKAL 332
Query: 616 QQL 618
Q L
Sbjct: 333 QML 335
|
Length = 566 |
| >gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 7e-32
Identities = 104/387 (26%), Positives = 174/387 (44%), Gaps = 46/387 (11%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQA 322
DE ++ +AL+ +G++ VF G +E+ A + I + R+EQ +AA+
Sbjct: 10 DEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEG 69
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
+ K GVC+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 70 YAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 129
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ R K++ ++ I + + +A L++ G+PG +D P + I Q VP
Sbjct: 130 VTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD-----IQQQLAVP--- 181
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
+ PG ++ P P ++L+Q RLI E+K P
Sbjct: 182 NWNQPMKLPGYL-----------SRLP------------KPPEKSQLEQIVRLISESKRP 218
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------A 555
+V +G G + EL FV +P T MG G P + + H A
Sbjct: 219 VVYVGGGC--LNSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYA 276
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
+ +ADL+L G R + + G+ F S I+ +D++ E+ + Q V++ +DV+L +
Sbjct: 277 VDSADLLLAFGVRFDDRVT-GKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLAL 335
Query: 616 QQLKQML-SHTQRNWSFSATSPWWQEL 641
Q L ++L + FSA W EL
Sbjct: 336 QGLNKLLEERKAKRPDFSA---WRAEL 359
|
Length = 585 |
| >gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-30
Identities = 98/392 (25%), Positives = 176/392 (44%), Gaps = 56/392 (14%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQ 321
E ++ Q + ++L+ G++ VFGI G +PV + + + ++ +R+EQ A +AA+
Sbjct: 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTK--VRHVLVRHEQGAGHAAE 86
Query: 322 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 381
T + GVC+ SGPG + +A+A ++ P++ I G + G FQE V
Sbjct: 87 GYAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIV 146
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
+ P K++ + I + + +A +++ G+PG +D P + L Q+
Sbjct: 147 GITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDAL-----QA------ 195
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
+ T WP ++ L P V +P ++++A++LI A+
Sbjct: 196 ---QTTFSWP--------PRMDLPGYRP------VTKPHG-----KQIREAAKLIAAARR 233
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTH 554
P++ +G G ++A EL +P + T M +G PD+HP + + A
Sbjct: 234 PVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVA 293
Query: 555 ALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
ALQ +DL++ LGAR F G+ F + K+I D++ E+ + A V I
Sbjct: 294 ALQRSDLLIALGAR------FDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVG 347
Query: 610 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 641
DV+ + +L L + WW L
Sbjct: 348 DVKEVIAELIAALRAEHAAGGKPDLTAWWAYL 379
|
Length = 612 |
| >gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-30
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 5/87 (5%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
R+++ PRHRLD GT+G MG+G+G+A+AAA+ GK VV ++GDSAFGFSGME
Sbjct: 405 ARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAV-----ETGKPVVAIEGDSAFGFSGME 459
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFDE 245
+ET+ RY LPV +VI NN GIY G D
Sbjct: 460 VETICRYNLPVTVVIFNNGGIYRGDDV 486
|
Length = 569 |
| >gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-30
Identities = 92/390 (23%), Positives = 161/390 (41%), Gaps = 55/390 (14%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
+ I +AL+ +G++ +FG G ++ A + +I R+EQAA +AA + K
Sbjct: 5 EAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKV 64
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 390
GVC+ SGPG + G+A A + P++ + G G FQE + + P K+
Sbjct: 65 GVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKH 124
Query: 391 SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPW 450
+ + I + A ++ G+PG ++D P ++ + P P +
Sbjct: 125 NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGEL-DLEKYPIPA----KIDL 179
Query: 451 PGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGA 510
PG L ++K+A+ LI EA+ P+++ G G
Sbjct: 180 PGYKPTTFGHPL-------------------------QIKKAAELIAEAERPVILAGGGV 214
Query: 511 AYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQNADLVL 563
S A EL+ +P T MGKG P+ HP + H ++ +D+++
Sbjct: 215 IISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLI 274
Query: 564 LLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
+G R F G F N KII +D++ E+ +V+ V I D + L
Sbjct: 275 AIGCR------FSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNV---L 325
Query: 619 KQMLSHTQRNWSFSATSPWW---QELKLKC 645
+ +L+ + S W ++LK +
Sbjct: 326 RDLLAELMKK-EIKNKSEWLERVKKLKKES 354
|
Length = 586 |
| >gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-29
Identities = 97/385 (25%), Positives = 174/385 (45%), Gaps = 46/385 (11%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAIG 324
+LS +Q++ +ALK +G++ VFG G ++ + +Q +I R+EQAA +AA
Sbjct: 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYA 61
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
+ K GV +V SGPG + G+A A ++ P+++I G G FQE V ++
Sbjct: 62 RASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGIS 121
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
RP K++ +I + + +++A ++ G+PG ++D P ++ A
Sbjct: 122 RPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTAT-------------- 167
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
+ E + ++ L+ P ++K+A+ I EAK PL
Sbjct: 168 --------LGEFEYPKEISLKTYKPTYKGNS-----------RQIKKAAEAIKEAKKPLF 208
Query: 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQ 557
+G GA S A E+ V +P + T M +GV+ P + H A+
Sbjct: 209 YLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMS 268
Query: 558 NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
DL++ LGAR + + G+ F + KII VD++ + V A I D++ +++
Sbjct: 269 ECDLLISLGARFDDRVT-GKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKE 327
Query: 618 LKQMLSHTQRNWSFSATSPWWQELK 642
+ + L + + W + LK
Sbjct: 328 MLEELK----EENPTTYKEWREILK 348
|
Length = 563 |
| >gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-29
Identities = 85/377 (22%), Positives = 167/377 (44%), Gaps = 51/377 (13%)
Query: 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA----CQQEGIHYIGMRNEQAACYAAQAI 323
+ +++ +LK +G++ +FGI G+ +++ A + ++ MR+EQAA +AA
Sbjct: 3 TGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGY 62
Query: 324 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 383
+ PGVC SGPG + G+ A + P++ I G + G FQE + +
Sbjct: 63 ARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGV 122
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
KY I I Q ++ A ++T G+PG +D P ++ +++ +
Sbjct: 123 FENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEE--------- 173
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIA---ELKQASRLILEAK 500
+ WP + PLV + +P LK+A+ +++ A+
Sbjct: 174 ----IKWP---------------EKPLVKGYR------DFPTRIDRLALKKAAEILINAE 208
Query: 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------AR 552
P++++G G +S A E+L ++P + T GK +P HP A
Sbjct: 209 RPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEAS 268
Query: 553 THALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVR 612
AL+ +D +L++GAR + ++ K I V+++ + +++ V I + +
Sbjct: 269 MAALE-SDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAK 327
Query: 613 LTVQQL-KQMLSHTQRN 628
+ +++L K + Q+
Sbjct: 328 IILRELIKAITELGQKR 344
|
Length = 572 |
| >gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-28
Identities = 96/371 (25%), Positives = 155/371 (41%), Gaps = 69/371 (18%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
Q++ AL+ G+E VF + G + V++ A+ + I I R E A A+A G LT
Sbjct: 12 QILVDALRANGVERVFCVPGESYLAVLD-ALH-DETDIRVIVCRQEGGAAMMAEAYGKLT 69
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR-- 385
+PG+C V GPG + G+ A + PM++ G A+D FQE ++ R
Sbjct: 70 GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQE---IDYRRMF 126
Query: 386 -PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
P K+ A + I + V +A ++T G+PG L P ++L++ A VP
Sbjct: 127 GPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSET----AEVPDAPPY 182
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504
PG A+L + ++L+ A+ PLVI+G
Sbjct: 183 RRVAAAPGAADLARLAELLARAERPLVILG------------------------------ 212
Query: 505 IIGKGAAYS-QAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS----------AART 553
G+ ++ A +L +F + LP + + + HPN AAR
Sbjct: 213 ----GSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAAR- 267
Query: 554 HALQNADLVLLLGARLNWILHFG----RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
++ ADLVL +G RL + G P + ++ V +AEEL + +AI +
Sbjct: 268 --IREADLVLAVGTRLGEVTTQGYTLLDIPVPRQ--TLVHVHPDAEELGRVYRPDLAIVA 323
Query: 610 DVRLTVQQLKQ 620
D L
Sbjct: 324 DPAAFAAALAA 334
|
Length = 557 |
| >gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-27
Identities = 90/396 (22%), Positives = 155/396 (39%), Gaps = 61/396 (15%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
+++ ++ + L G+ + FGI+G ++ GI +I + +EQ A + A
Sbjct: 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFAR 60
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
+T + + + +GPG+ + +A A P++++ G+GGFQE Q+ + +
Sbjct: 61 VTGRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQ 120
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
+ KY + + + + + + G + L+ P + I+ P
Sbjct: 121 EFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPRDYFYGEIDVEIPRPVR---- 175
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
L+ A G L QA+RL+ EAK P++I
Sbjct: 176 ------------------LDRGA---------------GGATSLAQAARLLAEAKFPVII 202
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQN 558
G G A E + P + + + P +HP V S A + +
Sbjct: 203 SGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISD 262
Query: 559 ADLVLLLGARLNWILHFGRAPR-----FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
AD+VL LG RL FG P+ + N KIIQVD NA+ + + V I D +
Sbjct: 263 ADVVLALGTRLG---PFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKA 319
Query: 614 TVQQLKQML-------SHTQRNWSFSAT-SPWWQEL 641
++ Q L + +R A S W QEL
Sbjct: 320 AAAEILQRLAGKAGDANRAERKAKIQAERSAWEQEL 355
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur [Central intermediary metabolism, Other]. Length = 579 |
| >gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-27
Identities = 101/396 (25%), Positives = 177/396 (44%), Gaps = 44/396 (11%)
Query: 256 KSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQ 314
+ S +++ +++ QALK QG+E++FG G V+ + QQ+ I +I +R+EQ
Sbjct: 1 SAQKSHM-PRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQ 59
Query: 315 AACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG 374
A +AA+ T KPGV LV SGPG + + +A ++ P++ I G G
Sbjct: 60 GAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDA 119
Query: 375 FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQ 434
FQEC V + RP K++ +++ + + + +A ++T G+PG +D P ++ Q
Sbjct: 120 FQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV------Q 173
Query: 435 SALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
A T P A + + Q ++ A + +A
Sbjct: 174 FA--------TGTYTPPQKAPVHVSYQPKVKGDA------------------EAITEAVE 207
Query: 495 LILEAKAPLVIIGKGAAYSQAE-TELL-SFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR 552
L+ AK P++ G G S E + LL V P T MG G P + N +
Sbjct: 208 LLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLG 267
Query: 553 TH-------ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAV 605
H A+ + D++L +GAR + + GR F N K I +D++ ++ +V+ V
Sbjct: 268 MHGTYEANMAMHDCDVMLCVGARFDDRIT-GRLDAFSPNSKKIHIDIDPSSINKNVRVDV 326
Query: 606 AIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 641
I DV ++ + ++ + A + WW ++
Sbjct: 327 PIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQI 362
|
Length = 595 |
| >gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-27
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 3/204 (1%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
++ L+ QG+ YVFGI G + + A + +GI I +R+EQ A + AQA+G +T KP
Sbjct: 3 DLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKP 62
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 390
GV LV SGPG + G+A A P++ IGG + Q V L RP KY
Sbjct: 63 GVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKY 122
Query: 391 SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPW 450
SA + + + V A R + GKPG +++ P +++ ++ A+ + P L
Sbjct: 123 SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVKAIPASYA---PKLGA 179
Query: 451 PGIAELKQASQLILEAKAPLVIIG 474
+ + ++ I AK P++++G
Sbjct: 180 APDDAIDEVAEAIQNAKLPVLLLG 203
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family [Energy metabolism, Fermentation]. Length = 539 |
| >gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 4e-27
Identities = 101/370 (27%), Positives = 166/370 (44%), Gaps = 65/370 (17%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 325
Q + AL+ QG++ VFG G +PV + A G+ ++ R+EQ A AA IGY
Sbjct: 5 QWVVHALRAQGVDTVFGYPGGAIMPVYD---ALYDGGVEHLLCRHEQGAAMAA--IGYAR 59
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
T K GVC+ SGPG + G+A+A ++ P++ I G + G FQE + L+
Sbjct: 60 ATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSL 119
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
K+S ++ + + + +A +++ G+PG +D P ++ Q A L
Sbjct: 120 ACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI------QLAEGELEPHLT 173
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
EP P AEL+QA L+ +AK P++
Sbjct: 174 TVEN----------------------------EPAFP---AAELEQARALLAQAKKPVLY 202
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQN 558
+G G + A L F+ + +P + T G G V HP + + A A+Q
Sbjct: 203 VGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQE 262
Query: 559 ADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
DL++ +GAR F G+ F + K+I +D++ E++ QA VA+Q D+
Sbjct: 263 CDLLIAVGAR------FDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNA 316
Query: 614 TVQQLKQMLS 623
+ L+Q L+
Sbjct: 317 LLPALQQPLN 326
|
Length = 548 |
| >gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 5e-27
Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 51/373 (13%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
+ + + + L+ G+E VFGI G+ +EL GI ++ R+EQ A + A +
Sbjct: 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARV 61
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP-QVEL 383
+ KPGVC +++GPG+ + M A + PMLVI + +G G E P Q +
Sbjct: 62 SGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAM 121
Query: 384 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKV 443
+S + + + + +A + +P +++ P ++LA L+P P
Sbjct: 122 VAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLAAPA--DHLLPAPPT 179
Query: 444 LEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503
P P P A L QA+ + A+ PL
Sbjct: 180 ----------------------------------RPARPGPAPAALAQAAERLAAARRPL 205
Query: 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA----ARTHAL-QN 558
++ G GA A L + + P T KG++P HP + A AL
Sbjct: 206 ILAGGGAL--AAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAE 263
Query: 559 ADLVLLLGARL---NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
AD+VL +G L ++ ++F F ++I++D++ ++L + A+A+ D R +
Sbjct: 264 ADVVLAVGTELGETDYDVYF--DGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAAL 321
Query: 616 QQLKQMLSHTQRN 628
+ L L
Sbjct: 322 EALLARLPGQAAA 334
|
Length = 535 |
| >gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-27
Identities = 102/380 (26%), Positives = 163/380 (42%), Gaps = 60/380 (15%)
Query: 276 ALKFQGIEYVFGIVG---IPVI-ELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPG 331
+LK G++++FG G +P+ EL A + + +I +R+EQ A +AA T K G
Sbjct: 28 SLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVG 87
Query: 332 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYS 391
VC SGPG + G+A AQ++ PM+VI G + G FQE + P K+S
Sbjct: 88 VCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHS 147
Query: 392 --ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLP 449
R P+ + + V +A +++ G+PG +D P ++ + + P P
Sbjct: 148 YVVRDPSD--MARIVAEAFHIASSGRPGPVLIDIPKDVGQEEFD----------YVPVEP 195
Query: 450 WPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKG 509
+ PT+ ++ A +LI EA+ PL+ +G G
Sbjct: 196 GS--------------------VKPPGYRPTVK-GNPRQINAALKLIEEAERPLLYVGGG 234
Query: 510 AAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQNADLV 562
A + A EL F +P T MGKG + HP V H A+ DL+
Sbjct: 235 AISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLL 294
Query: 563 LLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
+ +GAR F G+ F S K+I +D++ E+ + + V I DVR
Sbjct: 295 IAVGAR------FDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKV--- 345
Query: 618 LKQMLSHTQRNWSFSATSPW 637
L ++L + + T W
Sbjct: 346 LVKLLERSLEPTTPPRTQAW 365
|
Length = 616 |
| >gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-26
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 5/86 (5%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
R+++ PRHRLD GT+G MG+G+G+A+AAA+ GK VV ++GDSAFGFSGME
Sbjct: 398 ARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAV-----ETGKPVVALEGDSAFGFSGME 452
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFD 244
+ET+ RY LPV +VI NN GIY G D
Sbjct: 453 VETICRYNLPVCVVIFNNGGIYRGDD 478
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase [Cellular processes, Detoxification]. Length = 554 |
| >gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-26
Identities = 97/375 (25%), Positives = 151/375 (40%), Gaps = 59/375 (15%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
+ IA+ALK G+E +FG +P L +A + GI I R E A A
Sbjct: 13 NGTVAHAIARALKRHGVEQIFG-QSLPSA-LFLAAEAIGIRQIAYRTENAGGAMADGYAR 70
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
++ K V +GP +A A P++ + +D FQE + L +
Sbjct: 71 VSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQ 130
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
K+ R I +V++A +T G+PG L PA+LL A P L
Sbjct: 131 SCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLTAAAAAPA-APRSNSLG 189
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
+P L+ T+P P L +A+ L+ +A+ P+V+
Sbjct: 190 ---HFP-------------------------LDRTVPAP--QRLAEAASLLAQAQRPVVV 219
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-------NCV---SAAR--T 553
G G S A L + + LP T MGKG V + HP + + S R
Sbjct: 220 AGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLR 279
Query: 554 HALQNADLVLLLGARLN------WILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 607
++ AD+VLL+G R N W L + + I +D++ EE+ + + A+ +
Sbjct: 280 DLVREADVVLLVGTRTNQNGTDSWSL-------YPEQAQYIHIDVDGEEVGRNYE-ALRL 331
Query: 608 QSDVRLTVQQLKQML 622
D RLT+ L L
Sbjct: 332 VGDARLTLAALTDAL 346
|
Length = 578 |
| >gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-25
Identities = 94/383 (24%), Positives = 167/383 (43%), Gaps = 47/383 (12%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
++ Q++ +AL+ +G+E +FG G V+ L A GI +I R+EQ A +AA+ +
Sbjct: 16 MTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARI 75
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
+ KPGV + SGPG + G+A+A I+ P++V G A G FQE + + P
Sbjct: 76 SGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMP 135
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
K++ + + + +++A ++T G+PG +D P ++ + +
Sbjct: 136 VTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM--------VVEEGEFCYDV 187
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
+ PG + + L I +L QA + AK P+++
Sbjct: 188 QMDLPGYQPNYEPNLL----------------------QIRKLVQA---VSVAKKPVILA 222
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTH-------ALQNA 559
G G +++A EL S+ +P + T +G G P HP + A H AL
Sbjct: 223 GAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYEC 282
Query: 560 DLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 619
DL++ +GAR + + G F + +D++ E+ +V + I +D + +Q L
Sbjct: 283 DLLINIGARFDDRVT-GNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVL- 340
Query: 620 QMLSHTQRNWSFSATSPWWQELK 642
Q+ W LK
Sbjct: 341 -----LQQEGKKENHHEWLSLLK 358
|
Length = 571 |
| >gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 2e-25
Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 15/210 (7%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330
++ +L QG++YVFGI G + + A + G I R+EQ A + A AIG LT KP
Sbjct: 9 DLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKP 68
Query: 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD------HEGIGGFQECPQVELA 384
GV LV SGPG+ + G+ A P++ IGG + H Q V L
Sbjct: 69 GVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLKRTH------QSMDNVALF 122
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVL 444
RP KYSA + + + + A R + G+PG +++ P +++ + A+ P K
Sbjct: 123 RPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTSKAIAPLSK-- 180
Query: 445 EPTLPWPGIAELKQASQLILEAKAPLVIIG 474
P L ++ ++LI AK P++++G
Sbjct: 181 -PKLGPASPEDINYLAELIKNAKLPVLLLG 209
|
Length = 552 |
| >gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-25
Identities = 85/371 (22%), Positives = 147/371 (39%), Gaps = 58/371 (15%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
+ + +A+ LK +G+E +FG PV EL A GI + R E+ A + A
Sbjct: 20 MKVAEAVAEILKEEGVELLFGF---PVNELFDAAAAAGIRPVIARTERVAVHMADGYARA 76
Query: 327 T--KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
T ++ GV V GPG + FGG+A A + P+L + + + P E
Sbjct: 77 TSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA-----PNFESL 131
Query: 385 RPY---CKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
R Y K+ + + + + +A G+PG L+ P ++LA+ +++ L P
Sbjct: 132 RNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDVLAEELDELPLDHRP 191
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
++ + P E+ +A+ L+L A+
Sbjct: 192 ------------------------SRR-----------SRPGADPVEVVEAAALLLAAER 216
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-------NCVSAARTH 554
P++ G+G Y+QA EL +P + T GK P+ HP A H
Sbjct: 217 PVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAH 276
Query: 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 614
L+ AD++ +G L + P K+ II L+ +L+ + D L
Sbjct: 277 FLREADVLFGIGCSLTRSYYGLPMPEGKT---IIHSTLDDADLNKDYPIDHGLVGDAALV 333
Query: 615 VQQLKQMLSHT 625
++Q+ + L
Sbjct: 334 LKQMIEELRRR 344
|
Length = 565 |
| >gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 7e-24
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQ-QEGIHYIGMRNEQAACYAAQAIGYLTKK 329
VI + L+ G++ V+GI G + L A + + I +I +R+E+AA +AA A LT K
Sbjct: 4 DVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGK 63
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK 389
GVCL SGPG +H G+ +A+ + P+L I G D G FQE + L +
Sbjct: 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAV 123
Query: 390 YSARPPNIHLIGQH---VEKAVRLSTFGKPGVSYLDFPANL 427
Y+ + Q +++A+R + K GV+ L P ++
Sbjct: 124 YNET---VTSPEQLPELLDRAIR-TAIAKRGVAVLILPGDV 160
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of different subunits. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. Length = 164 |
| >gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 86/366 (23%), Positives = 145/366 (39%), Gaps = 67/366 (18%)
Query: 277 LKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVC 333
L+ GI + FGI+G + +L GI +I + +EQ A + A +T + G+
Sbjct: 16 LQAHGITHAFGIIGSAFMDASDLFPPA---GIRFIDVAHEQNAGHMADGYTRVTGRMGMV 72
Query: 334 LVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSAR 393
+ +GPG+ + +A A P++++ G GGFQE Q+ + KY
Sbjct: 73 IGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEE 132
Query: 394 PPN----IHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLP 449
+ ++ + +KA R S G + ++ P + I+ +P P LE
Sbjct: 133 VRDPSRMAEVLNRVFDKAKRES-----GPAQINIPRDYFYGVIDVE--IPQPVRLER--- 182
Query: 450 WPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKG 509
G L +A+ L+ EAK P+++ G G
Sbjct: 183 --------------------------------GAGGEQSLAEAAELLSEAKFPVILSGAG 210
Query: 510 AAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-------NCVSAARTHALQNADLV 562
S A E + + P + P +HP S A + AD+V
Sbjct: 211 VVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVV 270
Query: 563 LLLGARLNWILHFGRAPR-----FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
L LG RLN FG P+ + + KIIQVD+N + + + + +V I D + ++
Sbjct: 271 LALGTRLN---PFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARE 327
Query: 618 LKQMLS 623
L L+
Sbjct: 328 LLARLA 333
|
Length = 588 |
| >gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-22
Identities = 78/351 (22%), Positives = 148/351 (42%), Gaps = 54/351 (15%)
Query: 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
S +VI + L+ GI+ ++GI G + L A ++ + Y+ +R+E+ A AA +T
Sbjct: 3 SVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKIT 62
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 387
KP C+ SGPG +H G+ +A+++ P++ + G D G FQE +L
Sbjct: 63 GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDV 122
Query: 388 CKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPT 447
++ N + +A+R K GV++++ P ++
Sbjct: 123 AVFNQILINPENAEYIIRRAIR-EAISKRGVAHINLPVDI-------------------- 161
Query: 448 LPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIG 507
L+++S+ +GKV + +A LI E++ P+++IG
Sbjct: 162 --------LRKSSEYKGSKNTE---VGKVKYSI-------DFSRAKELIKESEKPVLLIG 203
Query: 508 KGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHALQNAD 560
G E+ F P + T GKG++PD P + + A+ AD
Sbjct: 204 GGT--RGLGKEINRFAEKIGAPIIYTLNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKAD 261
Query: 561 LVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDV 611
L+++LG ++ + + K+IQVD++ + + ++ V
Sbjct: 262 LLIMLGTSFPYVNFLNK------SAKVIQVDIDNSNIGKRLDVDLSYPIPV 306
|
Length = 549 |
| >gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 1e-21
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQ-QEGIHYIGMRNEQAACYAAQAIGYLTKK 71
VI + L+ G++ V+GI G + L A + + I +I +R+E+AA +AA A LT K
Sbjct: 4 DVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGK 63
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK 131
GVCL SGPG +H G+ +A+ + P+L I G D G FQE + L +
Sbjct: 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAV 123
Query: 132 YSARPPNIHLIGQHVEKAVR 151
Y+ + Q E R
Sbjct: 124 YNET---VTSPEQLPELLDR 140
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of different subunits. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. Length = 164 |
| >gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 56/381 (14%)
Query: 269 ANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 326
A+ + + L+ G+++++GI G A++ +++ IHYI +R+E+ AA A L
Sbjct: 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKL 60
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 386
T K GVC +GPG H G+ +A+ + P+L + G + FQE + +
Sbjct: 61 TGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYAD 120
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
Y+ + +++A+R + GV+ + P + Q I P
Sbjct: 121 VAVYNRTAMTAESLPHVIDEAIR-RAYAHNGVAVVTIPVDFGWQEI-------------P 166
Query: 447 TLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506
+ + Q P LP P + + +A + + A+ P++
Sbjct: 167 DNDYYASSVSYQT-------------------PLLPAPDVEAVTRAVQTLKAAERPVIYY 207
Query: 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-NCVSAART------HALQNA 559
G GA +A EL + +P + T + KG++ D +P SA R AL A
Sbjct: 208 GIGA--RKAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYLGSAYRVAQKPANEALFQA 265
Query: 560 DLVLLLGARLNW-ILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
DLVL +G + + FK+ IQ+D++ +L +A+ +D + + L
Sbjct: 266 DLVLFVGNNYPFAEVSKA----FKNTKYFIQIDIDPAKLGKRHHTDIAVLADAK---KAL 318
Query: 619 KQMLSHTQRNWSFSATSPWWQ 639
+L+ + ++PWWQ
Sbjct: 319 AAILAQVEP----RESTPWWQ 335
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name [Energy metabolism, Aerobic]. Length = 575 |
| >gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 3e-21
Identities = 47/146 (32%), Positives = 80/146 (54%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
A ++ A+ LK G++ +F + G + L ++EGI I +R+EQ A +AA+A
Sbjct: 4 TGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAK 63
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
LT+ PGV ++ +GPG+ + MA AQ N P++V+GG G+G QE V
Sbjct: 64 LTRVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVA 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLS 153
P K++A + G+ V++A++ +
Sbjct: 124 PVTKFAATAQSAENAGRLVDQALQAA 149
|
Length = 542 |
| >gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 7e-21
Identities = 39/100 (39%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
IG H A R F P R L +G GTMG GL A+ A L P +
Sbjct: 2 IGCHQMWAARYYRFRPP----------RRYLTSGGLGTMGYGLPAAIGAKLAR----PDR 47
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241
VV + GD F + EL T VRY LP+ +V++ NNG YG
Sbjct: 48 PVVAIAGDGGFQMNLQELATAVRYNLPITVVVL-NNGGYG 86
|
Length = 151 |
| >gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 1e-20
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G GTMG GL A+ A L P ++VV + GD F +G ELET VRY L
Sbjct: 398 PRRFLTSGGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMNGQELETAVRYGL 453
Query: 228 PVILVIVNNNGIYG 241
PV +V++NN G YG
Sbjct: 454 PVKIVVLNNGG-YG 466
|
Length = 550 |
| >gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-20
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAI 65
E LS +++ +AL+ +G+EY++G G V+ + A +Q+ + +I +R+EQAA + A
Sbjct: 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGY 61
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T K GV LV SGPG + G+A A ++ PM+V+ G G FQE V +
Sbjct: 62 ARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGI 121
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+RP K+S + I + ++KA ++ G+PG
Sbjct: 122 SRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPG 155
|
Length = 574 |
| >gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 3e-20
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGY 67
+S + I ++LK +G++ VFG G ++ + A + GI +I +R+EQ A +AA
Sbjct: 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYAR 60
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
+ K GV LV SGPG + G+A A ++ PM+V G G FQE + +
Sbjct: 61 ASGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITM 120
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
P K+S + + I + +++A ++T G+PG
Sbjct: 121 PITKHSFQVKSAEDIPRIIKEAFHIATTGRPG 152
|
Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this model also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed [Amino acid biosynthesis, Pyruvate family]. Length = 558 |
| >gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 4e-20
Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAI 65
E LS +I ++L +G++++FG G V+++ A ++ GI +I +R+EQAA + A
Sbjct: 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGY 61
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T K GV LV SGPG +T G+A A ++ PM+V+ G + G FQEC + +
Sbjct: 62 ARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+RP K+S + I + ++KA +++ G+PG
Sbjct: 122 SRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPG 155
|
Length = 572 |
| >gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 4e-20
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
++ L+ QG+ YVFGI G + + A + +GI I +R+EQ A + AQA+G +T KP
Sbjct: 3 DLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKP 62
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 132
GV LV SGPG + G+A A P++ IGG + Q V L RP KY
Sbjct: 63 GVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKY 122
Query: 133 SARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDA 174
SA + + + V A R + GKPG + + +LP+ +D+
Sbjct: 123 SAEVQDPDALSEVVANAFRAAESGKPGAAFV--SLPQDVVDS 162
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family [Energy metabolism, Fermentation]. Length = 539 |
| >gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 9e-20
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 64
+ +++ +AL +G+E+++G G V+ + +Q+ I ++ +R+EQAA +AA
Sbjct: 18 AADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADG 77
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
T K GV LV SGPG+ + G+A A ++ PM+VI G G FQEC V
Sbjct: 78 YARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVG 137
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ RP K++ ++ + + V+KA ++ G+PG
Sbjct: 138 ITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPG 172
|
Length = 587 |
| >gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-19
Identities = 93/367 (25%), Positives = 151/367 (41%), Gaps = 54/367 (14%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKK 329
IA+ L+ G++ ++G+ G + L+ + ++ G I ++ R+E+ A +AA A LT +
Sbjct: 7 DYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGE 66
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC-PQVELARPYC 388
VC GPG LH G+ + N P+L I G G FQE PQ EL R
Sbjct: 67 LAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQ-ELFRECS 125
Query: 389 KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTL 448
Y N + + + A+R GV+ + P ++ AL P P+ T
Sbjct: 126 HYCELVSNPEQLPRVLAIAMR-KAILNRGVAVVVLPGDV--------ALKPAPE--RATP 174
Query: 449 PWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGK 508
W A P+V P EL++ + L+ + ++ G
Sbjct: 175 HW-------------YHAPQPVVT-----------PAEEELRKLAALLNGSSNITLLCGS 210
Query: 509 GAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADL 561
G A A EL++ + P + GK V +P V ++ HA+ N D
Sbjct: 211 GCA--GAHDELVALAETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDT 268
Query: 562 VLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQM 621
+L+LG F + ++ KIIQ+D+N L + + DV+ T+ L +
Sbjct: 269 LLMLGTD------FPYRQFYPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPL 322
Query: 622 LS-HTQR 627
L T R
Sbjct: 323 LEEKTDR 329
|
Length = 574 |
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-19
Identities = 37/74 (50%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
R L + FG MG GL A+ AAL AP + VVC+ GD F +G EL T VRY L
Sbjct: 36 GRRFLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGGFMMTGQELATAVRYGL 91
Query: 228 PVILVIVNNNGIYG 241
PVI+V+ NN G YG
Sbjct: 92 PVIVVVFNNGG-YG 104
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168 |
| >gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 1e-18
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAI 65
++LS +++ Q+L+ +G+EYVFG G V+++ A GI ++ +R+EQAA + A
Sbjct: 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGY 61
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T K G LV SGPG + G+A A + P++++ G + G FQEC + +
Sbjct: 62 ARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+RP K+S N I ++KA +++ G+PG
Sbjct: 122 SRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPG 155
|
Length = 574 |
| >gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 80/361 (22%), Positives = 147/361 (40%), Gaps = 60/361 (16%)
Query: 272 VIAQALKFQGIEYVFGIVGI---PVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 328
+IA L+ G++ FG++ I P+++ A+ ++ I ++ R E A A A ++
Sbjct: 8 LIAAFLEQCGVKTAFGVISIHNMPILD-AIG-RRGKIRFVPARGEAGAVNMADAHARVSG 65
Query: 329 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP-QVELAR 385
GV L +G G + G + A P+L I G + + +G E P Q+ + R
Sbjct: 66 GLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLR 125
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLE 445
K + R + + +AVR++ G ++ P ++ Q+A + P L
Sbjct: 126 AVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI------QAAEIELPDDLA 179
Query: 446 PTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505
P + +P P A + + + + A+ PL+
Sbjct: 180 P------------------------------VHVAVPEPDAAAVAELAERLAAARRPLLW 209
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHA-----LQNAD 560
+G GA ++ AE + L + + G+GVVP+ HP + A A + D
Sbjct: 210 LGGGARHAGAEVKRLV---DLGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCD 266
Query: 561 LVLLLGARL--NWILHFG-RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQ 617
L+L++G+RL N L + PR +I+VD +A + + D + +
Sbjct: 267 LLLVVGSRLRGNETLKYSLALPR-----PLIRVDADAAADGRGYPNDLFVHGDAARVLAR 321
Query: 618 L 618
L
Sbjct: 322 L 322
|
Length = 544 |
| >gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-18
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAI 65
E LS +++ ++L QG++ VFG G V+++ A GI ++ +R+EQAA + A +
Sbjct: 2 EMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGL 61
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T + GV LV SGPG + G+A A ++ P++V+ G A G FQEC V +
Sbjct: 62 ARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGI 121
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+RP K+S I Q ++KA L+ G+PG
Sbjct: 122 SRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPG 155
|
Length = 574 |
| >gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 7e-18
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
++ +L QG++YVFGI G + + A + G I R+EQ A + A AIG LT KP
Sbjct: 9 DLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKP 68
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD------HEGIGGFQECPQVELA 126
GV LV SGPG+ + G+ A P++ IGG + H Q V L
Sbjct: 69 GVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLKRTH------QSMDNVALF 122
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
RP KYSA + + + + A R + G+PG + +
Sbjct: 123 RPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFV 159
|
Length = 552 |
| >gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 9e-18
Identities = 50/149 (33%), Positives = 74/149 (49%)
Query: 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 70
A + + L+ +G+EY+FGI G ++L A + I I R+EQ A + A G LT
Sbjct: 3 AADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTG 62
Query: 71 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC 130
K GVCL GPG + G+A AQ+ PM+ I G G FQ V + P
Sbjct: 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLT 122
Query: 131 KYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
K++ + + I + V +A RL+ +PG
Sbjct: 123 KWTRQIVSPDNIPEVVREAFRLAEEERPG 151
|
Length = 547 |
| >gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-17
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC 1018
LP+++V+ NN G Y G D P T+L P RY+ + FG G L
Sbjct: 93 LPIVVVVGNNGGWYQGLDGQQL-------SYGLGLPVTTLLPDTRYDLVAEAFGGKGELV 145
Query: 1019 TTVPQIKQAMKKCLQTTTRPSLINILI 1045
TT ++K A+K+ L + +P+LIN++I
Sbjct: 146 TTPEELKPALKRALA-SGKPALINVII 171
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. Length = 172 |
| >gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 1e-17
Identities = 49/157 (31%), Positives = 85/157 (54%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
EE++ + Q LK G+ VFG G ++ + A + G+ +I R+EQAA +AA+
Sbjct: 13 EEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYA 72
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 126
+ K GV SGPG + G+A+A ++ P++VI G A G GFQE V +
Sbjct: 73 RASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGIT 132
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
P K++ + +++ + + V++A ++ G+PG L+
Sbjct: 133 VPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLI 169
|
Length = 570 |
| >gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-17
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 64
+++ +++ QALK QG+E++FG G V+ + QQ+ I +I +R+EQ A +AA+
Sbjct: 8 PRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEG 67
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
T KPGV LV SGPG + + +A ++ P++ I G G FQEC V
Sbjct: 68 YARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVG 127
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ RP K++ +++ + + + +A ++T G+PG
Sbjct: 128 ITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPG 162
|
Length = 595 |
| >gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-17
Identities = 81/374 (21%), Positives = 138/374 (36%), Gaps = 69/374 (18%)
Query: 276 ALKFQGIEYVFGIVG---IPVIELAMACQQEGIH---YIGMRNEQAACYAAQAIGY--LT 327
LK G++Y+F G P+IE + G ++ +E A + A GY +T
Sbjct: 16 LLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVA--ISMAHGYALVT 73
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG--------IGGFQEC- 378
KP +V G + GG+ NA + P+LV G EG I QE
Sbjct: 74 GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMR 133
Query: 379 PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALV 438
Q L R Y K+ IG+ V +A++++ G YL P +LA+
Sbjct: 134 DQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREVLAE-------- 185
Query: 439 PTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILE 498
P+V A P P ++ +A+ ++
Sbjct: 186 EVPEVKADAGRQMAPAP--------------------------PAPDPEDIARAAEMLAA 219
Query: 499 AKAPLVIIGKGAAYSQAETELLSFVNSFNLP---FLPTPMGKGVVPDAHPNCVSAARTHA 555
A+ P++I + ++ L +P + + P HP +
Sbjct: 220 AERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVV---NYPSDHPLHLGPDPRAD 276
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHN-----SVQAAVAIQSD 610
L ADLVL++ + + WI R ++ ++IQ+D + L + + IQ+D
Sbjct: 277 LAEADLVLVVDSDVPWIPKKIRPD---ADARVIQID--VDPLKSRIPLWGFPCDLCIQAD 331
Query: 611 VRLTVQQLKQMLSH 624
+ QL++ L
Sbjct: 332 TSTALDQLEERLKS 345
|
Length = 569 |
| >gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 5e-17
Identities = 38/70 (54%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 172 LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVIL 231
LD G FG +G G G+ALAA L P ++VV +QGD AFGFS M+++TLVR+ LPV+
Sbjct: 401 LDPGPFGCLGTGPGYALAARLA----RPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVS 456
Query: 232 VIVNNNGIYG 241
V + NNGI+G
Sbjct: 457 V-IGNNGIWG 465
|
Length = 542 |
| >gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 1e-16
Identities = 89/390 (22%), Positives = 150/390 (38%), Gaps = 56/390 (14%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 332
L+ +GI FG+ G + A ++ G I +I R+ + A + A+ GY G V
Sbjct: 14 LEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 71
Query: 333 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 392
C+ SGP G+ +A + P+L I G + FQ +A+P K++
Sbjct: 72 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAV 131
Query: 393 RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPG 452
L+ + +++A L G+PG +D P ++ I P + EP
Sbjct: 132 TVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD-----PDMYEP------ 180
Query: 453 IAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAY 512
L P + ++A ++++A+ PL++ G G
Sbjct: 181 ------------------------LPVYKPAATRVQAEKALAMLIQAERPLIVAGGGVIN 216
Query: 513 SQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP---NCVSAARTHALQNA-----DLVLL 564
+ A L F +P +PT MG G +PD HP V +H NA D+V
Sbjct: 217 ADAAALLQEFAELTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFG 276
Query: 565 LGARLNWI-LHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623
+G R W H G + K I VD+ ++ + I SD + + +L
Sbjct: 277 IGNR--WANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIVSDAKAAL----TLLL 330
Query: 624 HTQRNWSFSATSPWWQELKLKCQTNRQVKL 653
+ W + P + CQ ++ L
Sbjct: 331 DVAQEWKKAGKLPCRKAWVADCQQRKRTLL 360
|
Length = 592 |
| >gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 8e-16
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMA----CQQEGIHYIGMRNEQAACYAAQAI 65
+ +++ +LK +G++ +FGI G+ +++ A + ++ MR+EQAA +AA
Sbjct: 3 TGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGY 62
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
+ PGVC SGPG + G+ A + P++ I G + G FQE + +
Sbjct: 63 ARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGV 122
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
KY I I Q ++ A ++T G+PG
Sbjct: 123 FENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPG 156
|
Length = 572 |
| >gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-15
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVP 541
P P EL A+ LI AK PL++ G G YS A L +F + +P + T GK +
Sbjct: 212 PPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALA 271
Query: 542 DAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNA 594
HP + A A + ADLV+ +G RL +A VK + LN
Sbjct: 272 WDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKFLN--LNV 329
Query: 595 EELHNSVQAAVAIQSDVRLTVQQLKQMLS--HTQRNW 629
+ A+ + +D R ++ L + L T W
Sbjct: 330 QPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGW 366
|
Length = 617 |
| >gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 1e-15
Identities = 87/387 (22%), Positives = 144/387 (37%), Gaps = 56/387 (14%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 332
L+ +GI FG+ G + A + G I +I R+ + A + A+ GY G V
Sbjct: 13 LEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 70
Query: 333 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 392
C+ SGP G+ +A + P+L I G + FQ +A+P K +
Sbjct: 71 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAV 130
Query: 393 RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPG 452
L+ + +++A L G+PG +D P ++ I P EP
Sbjct: 131 TVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD-----PDTYEP------ 179
Query: 453 IAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAY 512
L P A++++A ++ A+ PL++ G G
Sbjct: 180 ------------------------LPVYKPAATRAQIEKAVEMLNAAERPLIVAGGGVIN 215
Query: 513 SQAETELLSFVNSFNLPFLPTPMGKGVVPDAH---PNCVSAARTHALQNA-----DLVLL 564
+ A L F +P +PT MG G +PD H V +H NA D V
Sbjct: 216 ADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFG 275
Query: 565 LGARLNWI-LHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623
+G R W H G + K + VD+ ++ + I SD + + ++L
Sbjct: 276 IGNR--WANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAAL----KLLV 329
Query: 624 HTQRNWSFSATSPWWQELKLKCQTNRQ 650
+ + P E CQ ++
Sbjct: 330 EVAQELKKAGRLPDRSEWAADCQQRKR 356
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. Length = 588 |
| >gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 4e-15
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G GTMG GL A+ A + P K V+C+ GD +F + EL T +Y L
Sbjct: 40 PRSWLTSGGLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMNIQELATAAQYNL 95
Query: 228 PVILVIVNNN 237
PV +VI+NN
Sbjct: 96 PVKIVILNNG 105
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. Length = 186 |
| >gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 6e-15
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 64
+ S + ++ + L+ G++ +FG G V+ L A EGI +I R+EQ A + A+
Sbjct: 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEG 66
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
T K GV +V SGPG + G+A+A + P+LV G A+ G FQE V
Sbjct: 67 YAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVG 126
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ P KY+ + I + + +AV ++T G+PG
Sbjct: 127 ITMPITKYNYQIRETADIPRIITEAVHIATTGRPG 161
|
Length = 566 |
| >gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 8e-15
Identities = 47/151 (31%), Positives = 83/151 (54%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
++ Q++ +AL+ +G+E +FG G V+ L A GI +I R+EQ A +AA+ +
Sbjct: 16 MTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARI 75
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARP 128
+ KPGV + SGPG + G+A+A I+ P++V G A G FQE + + P
Sbjct: 76 SGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMP 135
Query: 129 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
K++ + + + +++A ++T G+PG
Sbjct: 136 VTKHNYQVRKASDLPRIIKEAFHIATTGRPG 166
|
Length = 571 |
| >gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-14
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQA 64
DE ++ +AL+ +G++ VF G +E+ A + I + R+EQ +AA+
Sbjct: 10 DEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEG 69
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
+ K GVC+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 70 YAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 129
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163
+ R K++ ++ I + + +A L++ G+PG L+
Sbjct: 130 VTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLV 168
|
Length = 585 |
| >gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-14
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 11 ANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
A + + + L+ GI++V+GI G + + A+ +Q+ I +I +R+E+ A AA A L
Sbjct: 6 AGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKL 65
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE 119
T K GVCL + GPG +H G+ +A+++ P+L + G D G FQE
Sbjct: 66 TGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQE 116
|
Length = 576 |
| >gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-14
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAIG 66
+LS +Q++ +ALK +G++ VFG G ++ + +Q +I R+EQAA +AA
Sbjct: 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYA 61
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 126
+ K GV +V SGPG + G+A A ++ P+++I G G FQE V ++
Sbjct: 62 RASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGIS 121
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
RP K++ +I + + +++A ++ G+PG
Sbjct: 122 RPCVKHNYLVKSIEELPRILKEAFYIARSGRPG 154
|
Length = 563 |
| >gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 6e-14
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
Q++ AL+ G+E VF + G + V++ A+ + I I R E A A+A G LT
Sbjct: 12 QILVDALRANGVERVFCVPGESYLAVLD-ALH-DETDIRVIVCRQEGGAAMMAEAYGKLT 69
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR-- 127
+PG+C V GPG + G+ A + PM++ G A+D FQE ++ R
Sbjct: 70 GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQE---IDYRRMF 126
Query: 128 -PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
P K+ A + I + V +A ++T G+PG
Sbjct: 127 GPMAKWVAEIDDAARIPELVSRAFHVATSGRPG 159
|
Length = 557 |
| >gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-14
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
++ + I L G++ VFG+ G + L A+ + I I R+EQAA Y A
Sbjct: 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFG 61
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP- 121
T +PGVC VV GPG+L+ + A P+L + G +G G E P
Sbjct: 62 YARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121
Query: 122 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
Q+ R + K++ R + V +A + G+P
Sbjct: 122 QLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPR 159
|
Length = 542 |
| >gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 7e-14
Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 2/163 (1%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
E+++ + I + L+ +G+E +FG G +I + + +I +R+EQAA +AA
Sbjct: 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYA 65
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 126
T K GVC+ SGPG + G+A A ++ P++ + G + G FQE +
Sbjct: 66 RATGKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGIT 125
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
P K++ + + + +++A +++ G+PG L+ +LP+
Sbjct: 126 MPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLI--DLPK 166
|
Length = 561 |
| >gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-13
Identities = 40/147 (27%), Positives = 70/147 (47%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 72
+ I +AL+ +G++ +FG G ++ A + +I R+EQAA +AA + K
Sbjct: 5 EAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKV 64
Query: 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY 132
GVC+ SGPG + G+A A + P++ + G G FQE + + P K+
Sbjct: 65 GVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKH 124
Query: 133 SARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ + I + A ++ G+PG
Sbjct: 125 NFQIKKPEEIPEIFRAAFEIAKTGRPG 151
|
Length = 586 |
| >gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-13
Identities = 80/329 (24%), Positives = 129/329 (39%), Gaps = 52/329 (15%)
Query: 277 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 332
L+ +G+ FG+ G + A ++ G I +I R+ + A + A+ GY G V
Sbjct: 14 LEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 71
Query: 333 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 392
C+ SGP G+ +A + P+L I G + FQ +A+P K++
Sbjct: 72 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAV 131
Query: 393 RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPG 452
L+ + ++A L G+PG +D P ++ I P EP
Sbjct: 132 TVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD-----PDTYEP------ 180
Query: 453 IAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAY 512
L P A++++A ++ A+ PL++ G G
Sbjct: 181 ------------------------LPVYKPAATRAQIEKALEMLNAAERPLIVAGGGVIN 216
Query: 513 SQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP---NCVSAARTHALQNA-----DLVLL 564
+ A L+ F +P +PT MG G +PD HP V +H NA D VL
Sbjct: 217 ADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLG 276
Query: 565 LGARLNWI-LHFGRAPRFKSNVKIIQVDL 592
+G R W H G + K + VD+
Sbjct: 277 IGNR--WANRHTGSVEVYTKGRKFVHVDI 303
|
Length = 591 |
| >gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-13
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
+ + + + L+ G+E VFGI G+ +EL GI ++ R+EQ A + A +
Sbjct: 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARV 61
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECP-QVEL 125
+ KPGVC +++GPG+ + M A + PMLVI + +G G E P Q +
Sbjct: 62 SGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAM 121
Query: 126 ARPYCKYSAR 135
+S
Sbjct: 122 VAGVAAFSHT 131
|
Length = 535 |
| >gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 952 SG-EVTTV----LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006
SG EV T+ LPV +VI NN GIY G D+ + + PT L RY+K
Sbjct: 456 SGMEVETICRYNLPVTVVIFNNGGIYRG-DDVNLSGAGDPS-------PTVLVHHARYDK 507
Query: 1007 MMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
MM FG GY TT +++ A+ + + + +P+LIN++I+P+A
Sbjct: 508 MMEAFGGVGYNVTTPDELRHALTEAIA-SGKPTLINVVIDPAA 549
|
Length = 569 |
| >gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-13
Identities = 42/101 (41%), Positives = 54/101 (53%), Gaps = 16/101 (15%)
Query: 954 EVTTV----LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSP-PTSLGPSLRYEKMM 1008
EV T+ LPV +VI NN GIY G D V P PT L RY+KMM
Sbjct: 452 EVETICRYNLPVCVVIFNNGGIYRGDDV----------NVVGADPAPTVLVHGARYDKMM 501
Query: 1009 AVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
FG GY TT ++K A+ + L + +P+LIN +I+PSA
Sbjct: 502 KAFGGVGYNVTTPDELKAALNEALA-SGKPTLINAVIDPSA 541
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase [Cellular processes, Detoxification]. Length = 554 |
| >gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 5e-13
Identities = 91/368 (24%), Positives = 150/368 (40%), Gaps = 65/368 (17%)
Query: 269 ANQVIAQALKFQGIEYVFGIVGI---PVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
A Q++ Q L G++ ++GIVG P+++ + GI ++ +R+E+AA +AA A
Sbjct: 6 AEQLVEQ-LVAAGVKRIYGIVGDSLNPIVDAVR--RTGGIEWVHVRHEEAAAFAAAAEAQ 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC-PQ---V 381
LT K VC GPG LH G+ +A + P+L I G G FQE P V
Sbjct: 63 LTGKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFV 122
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
E + YC+ + + A++ GVS + P ++ + + P
Sbjct: 123 ECSG-YCEMVSSAEQAPRVLHS---AIQ-HAVAGGGVSVVTLPGDIADEPAPEG---FAP 174
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
V+ P P V+ P AE++ + I EAK
Sbjct: 175 SVISPR--------------------RPTVV-----------PDPAEVRALADAINEAKK 203
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTH 554
+ G G + A E+L+ P + GK + +P V A
Sbjct: 204 VTLFAGAGVRGAHA--EVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAAHE 261
Query: 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLT 614
A+ ADL++LLG + +F +V+ QVD++ E L + +A+ DV T
Sbjct: 262 AMHEADLLILLGTDFPY-------DQFLPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAET 314
Query: 615 VQQLKQML 622
++ L ++
Sbjct: 315 IRALLPLV 322
|
Length = 578 |
| >gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P L + TMGV L A+ A L P ++VV V GD F + ELET VR ++
Sbjct: 38 PNTCLISNGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNSQELETAVRLKI 93
Query: 228 PVILVIVNNNGIYG 241
P++++I N+NG YG
Sbjct: 94 PLVVLIWNDNG-YG 106
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. Length = 177 |
| >gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 3e-12
Identities = 29/144 (20%), Positives = 66/144 (45%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
+++ ++ + L G+ + FGI+G ++ GI +I + +EQ A + A
Sbjct: 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFAR 60
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
+T + + + +GPG+ + +A A P++++ G+GGFQE Q+ + +
Sbjct: 61 VTGRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQ 120
Query: 128 PYCKYSARPPNIHLIGQHVEKAVR 151
+ KY + + + + +
Sbjct: 121 EFTKYQGHVRHPSRMAEVLNRCFE 144
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur [Central intermediary metabolism, Other]. Length = 579 |
| >gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-12
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 10/152 (6%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 67
Q + AL+ QG++ VFG G +PV + A G+ ++ R+EQ A AA IGY
Sbjct: 5 QWVVHALRAQGVDTVFGYPGGAIMPVYD---ALYDGGVEHLLCRHEQGAAMAA--IGYAR 59
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
T K GVC+ SGPG + G+A+A ++ P++ I G + G FQE + L+
Sbjct: 60 ATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSL 119
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
K+S ++ + + + +A +++ G+PG
Sbjct: 120 ACTKHSFLVQSLEELPEIMAEAFEIASSGRPG 151
|
Length = 548 |
| >gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 9e-12
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 23 GIEYVFGIVG---IPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVV 78
G++++FG G +P+ + A +++G I +I +R+EQ A +AA T K GVC
Sbjct: 24 GVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFAT 83
Query: 79 SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPN 138
SGPG + G+A AQ++ P+LVI G + G FQE + P K+S +
Sbjct: 84 SGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRD 143
Query: 139 IHLIGQHVEKAVRLSTFGKPG 159
I + V +A ++ G+PG
Sbjct: 144 ARDISRIVAEAFYIAKHGRPG 164
|
Length = 585 |
| >gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-11
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAI 65
+ + ++I + L+ QGI V GI G ++ L A Q I +I R+EQ A + AQ +
Sbjct: 11 KRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGM 70
Query: 66 GYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL 125
T KP VC+ SGPG + +A+A+++ P++ I G G FQE +
Sbjct: 71 ARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGI 130
Query: 126 ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ P K++ +I + Q + A R++ G+PG
Sbjct: 131 SIPITKHNYLVRDIEELPQVISDAFRIAQSGRPG 164
|
Length = 564 |
| >gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 19 LKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVC 75
L+ GI + FGI+G + +L GI +I + +EQ A + A +T + G+
Sbjct: 16 LQAHGITHAFGIIGSAFMDASDLFPPA---GIRFIDVAHEQNAGHMADGYTRVTGRMGMV 72
Query: 76 LVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSAR 135
+ +GPG+ + +A A P++++ G GGFQE Q+ + KY
Sbjct: 73 IGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEE 132
Query: 136 PPN 138
+
Sbjct: 133 VRD 135
|
Length = 588 |
| >gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PRH L + T+GV L +A+AAAL PGK+VV V GD F FS MELET VR +L
Sbjct: 404 PRHLLFSNGMQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFLFSAMELETAVRLKL 459
Query: 228 PVILVIVNNNG 238
++ +I N+
Sbjct: 460 NIVHIIWNDGH 470
|
Length = 552 |
| >gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
G TMG GL A+AA L P ++V+ + GD F +L T V+Y LPVI+V+
Sbjct: 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVF 103
Query: 235 NNN 237
NN+
Sbjct: 104 NNS 106
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. Length = 178 |
| >gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 174 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVI 233
A T G+MG GL A+AA L P + VV GD F +G EL T V+Y LP+I VI
Sbjct: 411 APTSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMNGQELATAVQYGLPII-VI 465
Query: 234 VNNNGIYG 241
V NNG+YG
Sbjct: 466 VVNNGMYG 473
|
Length = 557 |
| >gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-11
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
RH L + T+GV L +A+ AAL P +VV V GD F FS MELET VR +L
Sbjct: 398 ARHLLISNGMQTLGVALPWAIGAALV----RPNTKVVSVSGDGGFLFSSMELETAVRLKL 453
Query: 228 PVILVIVNNNG 238
++ +I N+NG
Sbjct: 454 NIVHIIWNDNG 464
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family [Energy metabolism, Fermentation]. Length = 539 |
| >gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 18 ALKFQGIEYVFGIVG---IPVI-ELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPG 73
+LK G++++FG G +P+ EL A + + +I +R+EQ A +AA T K G
Sbjct: 28 SLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVG 87
Query: 74 VCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYS 133
VC SGPG + G+A AQ++ PM+VI G + G FQE + P K+S
Sbjct: 88 VCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHS 147
Query: 134 --ARPPNIHLIGQHVEKAVRLSTFGKPG 159
R P+ + + V +A +++ G+PG
Sbjct: 148 YVVRDPSD--MARIVAEAFHIASSGRPG 173
|
Length = 616 |
| >gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 7/158 (4%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
A+ L G+ +VFG G +++ + + +E A AA
Sbjct: 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALRE--GDKRIIDTVIHELGAAGAAAGYARAG 58
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 387
P V +V SG GLL+ G+A+A P++ + G+ + FQ + + R
Sbjct: 59 G-PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSI 117
Query: 388 CKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425
+ + P+ + ++ A+R + + G + P
Sbjct: 118 PEANISSPSPAELPAGIDHAIR-TAYASQGPVVVRLPR 154
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate decarboxylase (ComDE), and the E1 component of human pyruvate dehydrogenase complex (E1- PDHc) the PYR and PP domains appear on different subunits. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. For many of these enzymes the active sites lie between PP and PYR domains on different subunits. However, for the homodimeric enzymes 1-deoxy-D-xylulose 5-phosphate synthase (DXS) and Desulfovibrio africanus pyruvate:ferredoxin oxidoreductase (PFOR), each active site lies at the interface of the PYR and PP domains from the same subunit. Length = 154 |
| >gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-10
Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQ 63
E ++ Q + ++L+ G++ VFGI G +PV + + + ++ +R+EQ A +AA+
Sbjct: 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTK--VRHVLVRHEQGAGHAAE 86
Query: 64 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 123
T + GVC+ SGPG + +A+A ++ P++ I G + G FQE V
Sbjct: 87 GYAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIV 146
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+ P K++ + I + + +A +++ G+PG
Sbjct: 147 GITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPG 182
|
Length = 612 |
| >gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-10
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 28/154 (18%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A + F KP R + +G GTMG GL A+ A + P
Sbjct: 386 VGQHQMWAAQFYPFRKP----------RRFITSGGLGTMGFGLPAAIGAKVA----KPES 431
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
V+C+ GD +F + EL T V+Y +PV ++I+NN + W ++ + S
Sbjct: 432 TVICITGDGSFQMNLQELSTAVQYDIPVKILILNN-----RYLGMVRQWQELFYEERYSH 486
Query: 262 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIE 295
+ L +A+A +GI GI + +
Sbjct: 487 THMGSLPDFVKLAEA---------YGIKGIRIEK 511
|
Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this model also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed [Amino acid biosynthesis, Pyruvate family]. Length = 558 |
| >gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-10
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 59/225 (26%)
Query: 164 LNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLV 223
L N PR + + GTMG G+ A+ + P + V+C+ GD++F + EL TL
Sbjct: 420 LRNGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMNIQELGTLA 475
Query: 224 RYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIE 283
+Y + V VI+NN W ++++ S Y E SA+ + F +
Sbjct: 476 QYGINVKTVIINNG------------WQGMVRQWQESF-YGERYSASNMEPGMPDFVKLA 522
Query: 284 YVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343
FG+ G+ + E R++ A L GP L+
Sbjct: 523 EAFGVKGMVISE---------------RDQLKDAIAEA------------LAHDGPVLI- 554
Query: 344 TFGGMANAQI----NCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
+ + NC+PM+ G S AQ + G E P++ LA
Sbjct: 555 ------DVHVRRDENCYPMVPPGKSNAQ----MVGLPEHPELALA 589
|
Length = 616 |
| >gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 9e-10
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 28/147 (19%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + +FG G+AL A + AP + VV + GD A+G S ME+ T VR++L
Sbjct: 43 PRSFIAPLSFGN----CGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMMEIMTAVRHKL 98
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PV V+ N W +K N + Y+ ++ ++ F I G
Sbjct: 99 PVTAVVFRN-----------RQWG--AEKKNQVDFYNNRFVGTEL--ESESFAKIAEACG 143
Query: 288 IVGI---------PVIELAMACQQEGI 305
GI P ++ A+A EG
Sbjct: 144 AKGITVDKPEDVGPALQKAIAMMAEGK 170
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. Length = 196 |
| >gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-09
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 183 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241
GLG+ + A+ PG V+C+ GD F ELET R +PV +V++ NNGI G
Sbjct: 438 GLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARRMGVPVTIVVL-NNGILG 495
|
Length = 578 |
| >gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 39/142 (27%), Positives = 70/142 (49%)
Query: 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
S +VI + L+ GI+ ++GI G + L A ++ + Y+ +R+E+ A AA +T
Sbjct: 3 SVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKIT 62
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 129
KP C+ SGPG +H G+ +A+++ P++ + G D G FQE +L
Sbjct: 63 GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDV 122
Query: 130 CKYSARPPNIHLIGQHVEKAVR 151
++ N + +A+R
Sbjct: 123 AVFNQILINPENAEYIIRRAIR 144
|
Length = 549 |
| >gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A F KP R +++G GTMG F L AAL P +
Sbjct: 395 VGQHQMFAALYYPFDKP----------RRWINSGGLGTMG----FGLPAALGVKMALPEE 440
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
VVCV GD + + EL T ++Y LPV+++ +NN + W D+I S+
Sbjct: 441 TVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNN-----RYLGMVKQWQDMIYSGRHSQ 495
Query: 262 DYDEELSANQVIAQALKFQGI 282
Y + L +A+A GI
Sbjct: 496 SYMQSLPDFVRLAEAYGHVGI 516
|
Length = 574 |
| >gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + G GT+G G AL A + P + VV + GD F F EL T V++ +
Sbjct: 392 PRTFVTCGYQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFGVQELATAVQHNI 447
Query: 228 PVILVIVNNNGIYG 241
V+ +V NN YG
Sbjct: 448 GVV-TVVFNNNAYG 460
|
Length = 542 |
| >gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 3e-09
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 185 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNG 238
G+++ AAL AP +RV+ + GD +F + EL T++RY L I+ ++NN+G
Sbjct: 53 GYSVPAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDG 106
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. Length = 183 |
| >gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 4e-09
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 180 MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239
+G GLG A+ A L P V+ + GD+AFG +GM+ ET VR R+P IL I+ NN
Sbjct: 433 LGYGLGLAMGAKLA----RPDALVINLWGDAAFGMTGMDFETAVRERIP-ILTILLNNFS 487
Query: 240 YGGFD 244
GG+D
Sbjct: 488 MGGYD 492
|
Length = 565 |
| >gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 222
L G +G GL A+ AAL P ++VV + GD +F ++ L T
Sbjct: 34 QLPLTRPGSYFTLRGGGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTIQALWTA 89
Query: 223 VRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGI 282
RY LPV +VI+NN G YG +S + E N L GI
Sbjct: 90 ARYGLPVTVVILNNRG-YG------------ALRSFLKRVGPEGPGENAPDGLDLLDPGI 136
Query: 283 EYV 285
++
Sbjct: 137 DFA 139
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178 |
| >gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 5e-09
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
TMG GL A+AA L P ++V+ V GD F + ELET VR LP++++I+N+
Sbjct: 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILND 460
Query: 237 NGIYG 241
N YG
Sbjct: 461 NA-YG 464
|
Length = 547 |
| >gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 5e-09
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 11 ANQVIAQALKFQGIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
A+ + + L+ G+++++GI G A++ +++ IHYI +R+E+ AA A L
Sbjct: 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKL 60
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE 119
T K GVC +GPG H G+ +A+ + P+L + G + FQE
Sbjct: 61 TGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQE 111
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name [Energy metabolism, Aerobic]. Length = 575 |
| >gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-09
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 4/167 (2%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
+ IA+ALK G+E +FG +P L +A + GI I R E A A
Sbjct: 13 NGTVAHAIARALKRHGVEQIFG-QSLPSA-LFLAAEAIGIRQIAYRTENAGGAMADGYAR 70
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
++ K V +GP +A A P++ + +D FQE + L +
Sbjct: 71 VSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQ 130
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDA 174
K+ R I +V++A +T G+PG +LL LP L A
Sbjct: 131 SCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLL--LPADLLTA 175
|
Length = 578 |
| >gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
R L G+FG G + A + C P + VV GD A+G S E+ T VR+
Sbjct: 425 GRKYLAPGSFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGISMNEVMTAVRHNW 480
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PV V+ N Y W +K N + Y+ + + + + GI G
Sbjct: 481 PVTAVVFRN-----------YQWG--AEKKNQVDFYNNRFVGTE-LDNNVSYAGIAEAMG 526
Query: 288 IVGI---------PVIELAMACQQEGI 305
G+ P ++ A+ Q EG
Sbjct: 527 AEGVVVDTQEELGPALKRAIDAQNEGK 553
|
Length = 588 |
| >gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 9e-09
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
A+ L G+ +VFG G +++ + + +E A AA
Sbjct: 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALRE--GDKRIIDTVIHELGAAGAAAGYARAG 58
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 129
P V +V SG GLL+ G+A+A P++ + G+ + FQ + + R
Sbjct: 59 G-PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSI 117
Query: 130 CKYSARPPNIH 140
+ + P+
Sbjct: 118 PEANISSPSPA 128
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate decarboxylase (ComDE), and the E1 component of human pyruvate dehydrogenase complex (E1- PDHc) the PYR and PP domains appear on different subunits. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. For many of these enzymes the active sites lie between PP and PYR domains on different subunits. However, for the homodimeric enzymes 1-deoxy-D-xylulose 5-phosphate synthase (DXS) and Desulfovibrio africanus pyruvate:ferredoxin oxidoreductase (PFOR), each active site lies at the interface of the PYR and PP domains from the same subunit. Length = 154 |
| >gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-08
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
+ PR +++G GTMG F L AA+ P VVCV GD + + EL T +Y
Sbjct: 409 DKPRRWINSGGAGTMG----FGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQY 464
Query: 226 RLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIE 283
+PV++V +NN F W D+I S+ Y L +A+A GI+
Sbjct: 465 DIPVVIVSLNNR-----FLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQ 517
|
Length = 574 |
| >gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A + F KP +++G GTMG GL A+ L P +
Sbjct: 397 VGQHQMFAAQYYKFNKP----------NRWINSGGLGTMGFGLPAAMGVKLAF----PDQ 442
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
V CV G+ + + EL T ++Y LPV ++ + NNG G + W D+ + S
Sbjct: 443 DVACVTGEGSIQMNIQELSTCLQYGLPVKIINL-NNGALGMVRQ----WQDMQYEGRHSH 497
Query: 262 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELA 297
Y E L +A+A +G VGI + +L
Sbjct: 498 SYMESLPDFVKLAEA---------YGHVGIRITDLK 524
|
Length = 574 |
| >gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 11 ANQVIAQALKFQGIEYVFGIVGI---PVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
A Q++ Q L G++ ++GIVG P+++ + GI ++ +R+E+AA +AA A
Sbjct: 6 AEQLVEQ-LVAAGVKRIYGIVGDSLNPIVDAVR--RTGGIEWVHVRHEEAAAFAAAAEAQ 62
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE 119
LT K VC GPG LH G+ +A + P+L I G G FQE
Sbjct: 63 LTGKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQE 114
|
Length = 578 |
| >gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 77/357 (21%), Positives = 141/357 (39%), Gaps = 68/357 (19%)
Query: 273 IAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL-TK 328
+ L GI+ +FG+ G + +++ + G+ ++G NE A YAA GY
Sbjct: 10 LFDRLAQLGIKSIFGVPGDYNLSLLDKIYS--VPGLRWVGNANELNAAYAAD--GYARLN 65
Query: 329 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS---CAQD-----HE--GIGGFQEC 378
+ G G L G+A + P++ I G AQ H G G F+
Sbjct: 66 GISALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKV- 124
Query: 379 PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG--KPGVSYLDFPANLLAQRINQSA 436
+++ A +I+ + +++ +R + +P Y+ PA++ I +
Sbjct: 125 -FHRMSKEITCAQAMLTDINTAPREIDRVIR-TALKQRRPV--YIGLPADVADLPIE-AP 179
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
L P L+ + P L + I E LI
Sbjct: 180 LTPLDLQLKTSDP----EALSEVIDTIAE-----------------------------LI 206
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN-------CVS 549
+AK P+++ + E EL +N+ P PMGKGV+ ++HPN +S
Sbjct: 207 NKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLS 266
Query: 550 AARTH-ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAV 605
A+++ADL+L +G L G ++K II++ ++ ++ ++V +
Sbjct: 267 EPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPA-NIIEIHPDSVKIKDAVFTNL 322
|
Length = 557 |
| >gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-08
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
N PR +G GTMG GL AL A L P K V+ GD + + EL T V Y
Sbjct: 402 NYPRQLATSGGLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMNIQELMTAVEY 457
Query: 226 RLPVILVIVNNN 237
++PVI +I+NNN
Sbjct: 458 KIPVINIILNNN 469
|
Length = 563 |
| >gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL 68
+ + +A+ LK +G+E +FG PV EL A GI + R E+ A + A
Sbjct: 20 MKVAEAVAEILKEEGVELLFGF---PVNELFDAAAAAGIRPVIARTERVAVHMADGYARA 76
Query: 69 T--KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI 103
T ++ GV V GPG + FGG+A A + P+L +
Sbjct: 77 TSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFL 113
|
Length = 565 |
| >gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 8e-08
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P + + + GTMG GL A+ A + P V+CV GD +F + EL T+ R +L
Sbjct: 391 PENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNVQELGTIKRKQL 446
Query: 228 PVILVIVNN 236
PV +V+++N
Sbjct: 447 PVKIVLLDN 455
|
Length = 548 |
| >gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-08
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKK 71
IA+ L+ G++ ++G+ G + L+ + ++ G I ++ R+E+ A +AA A LT +
Sbjct: 7 DYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGE 66
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC-PQVELARP-- 128
VC GPG LH G+ + N P+L I G G FQE PQ EL R
Sbjct: 67 LAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQ-ELFRECS 125
Query: 129 -YC 130
YC
Sbjct: 126 HYC 128
|
Length = 574 |
| >gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
N PR L +G GTMG GL A+ AAL P ++V+C GD + + E+ T
Sbjct: 407 NRPRQWLTSGGLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMNIQEMATAAEN 462
Query: 226 RLPVILVIVNNN 237
+L V ++++NN
Sbjct: 463 QLDVKIILMNNE 474
|
Length = 564 |
| >gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 19/141 (13%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A F KP R +++G GTMG F L AA+ P +
Sbjct: 395 VGQHQMFAALYYPFDKP----------RRWINSGGLGTMG----FGLPAAMGVKFAMPDE 440
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
VVCV GD + + EL T ++Y +PV ++ +NN F W D+I + S
Sbjct: 441 TVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNNR-----FLGMVKQWQDMIYQGRHSH 495
Query: 262 DYDEELSANQVIAQALKFQGI 282
Y + + IA+A GI
Sbjct: 496 SYMDSVPDFAKIAEAYGHVGI 516
|
Length = 572 |
| >gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + +G GTMG G A+ A + P V+ + GD F + EL T+ Y +
Sbjct: 409 PRSFISSGGLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMNSQELATIAEYDI 464
Query: 228 PVILVIVNN 236
PV++ I +N
Sbjct: 465 PVVICIFDN 473
|
Length = 586 |
| >gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-07
Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +FG G + A + P + VV GD A+G S E+ T VR+ +
Sbjct: 420 PRKFLAPMSFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMSMNEIMTAVRHDI 475
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PV V+ N W +K N + Y+ + + L F GI G
Sbjct: 476 PVTAVVFRN-----------RQWG--AEKKNQVDFYNNRFVGTE-LESELSFAGIADAMG 521
Query: 288 IVGI---------PVIELAMACQQEGI 305
G+ P ++ A+A Q EG
Sbjct: 522 AKGVVVDKPEDVGPALKKAIAAQAEGK 548
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur [Central intermediary metabolism, Other]. Length = 579 |
| >gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L + GTMG GL A+ A + P + V+C+ GD++F + EL T+ +Y L
Sbjct: 420 PRKWLSSAGLGTMGYGLPAAIGAQIA----HPNELVICISGDASFQMNLQELGTIAQYNL 475
Query: 228 PVILVIVNN 236
P+ ++I+NN
Sbjct: 476 PIKIIIINN 484
|
Length = 585 |
| >gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 168 PRHRLDAGT-FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYR 226
PR +A T +GT+G GL A+ AAL AP + VVC+ GD F+ EL + V
Sbjct: 396 PRRWFNASTGYGTLGYGLPAAIGAALG----APERPVVCLVGDGGLQFTLPELASAVEAD 451
Query: 227 LPVILVIVNNNGIYG 241
LP+I+++ NN+G YG
Sbjct: 452 LPLIVLLWNNDG-YG 465
|
Length = 535 |
| >gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-07
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 172 LDAGTFGTMGVG-LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVI 230
G+F TM G LG+ L AA+ PG+RV+ + GD + +S L + + +LPV
Sbjct: 396 RRQGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVT 455
Query: 231 LVIVNNNGIYG 241
VI+NN YG
Sbjct: 456 FVILNNGR-YG 465
|
Length = 530 |
| >gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G GTMG G A+ A L + V+C+ GD++F + EL+T+ +
Sbjct: 412 PRTFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMNIQELQTIAENNI 467
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSE 261
PV + I+NN F W ++ ++ +SE
Sbjct: 468 PVKVFIINN-----KFLGMVRQWQEMFYENRLSE 496
|
Length = 570 |
| >gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
GTMG GL A+AA + P ++ + + GD F + T V+Y+LP+++V++NN
Sbjct: 408 GTMGCGLPGAIAAKIA----FPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQ 463
Query: 238 GI 239
+
Sbjct: 464 QL 465
|
Length = 576 |
| >gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 27/141 (19%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + +G GTMG G A+ A + P K V+ + GD +F + EL T V+ +
Sbjct: 404 PRTFITSGGLGTMGYGFPAAIGAKVG----KPDKTVIDIAGDGSFQMNSQELATAVQNDI 459
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PVI+ I+NN G+ W ++ YD+ S I ++ F + +G
Sbjct: 460 PVIVAILNN-----GYLGMVRQWQELF--------YDKRYSHT-CIKGSVDFVKLAEAYG 505
Query: 288 IVGI---------PVIELAMA 299
+G+ P IE A+A
Sbjct: 506 ALGLRVEKPSEVRPAIEEAVA 526
|
Length = 561 |
| >gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
L PRH ++ G G LG+ + AAL P + VV + GD F F E
Sbjct: 400 AAQFLHVFKPRHWINCGQAGP----LGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEE 455
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKS--NMSEDYDEELSANQVIAQA 276
L ++++P I V+VNN A+L +I+++ DY +L+ + +
Sbjct: 456 LAVGAQFKIPYIHVLVNN------------AYLGLIRQAQRAFDMDYCVQLAFENINSSE 503
Query: 277 LKFQGIEYV 285
+ G+++V
Sbjct: 504 VNGYGVDHV 512
|
Length = 592 |
| >gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 14 VIAQALKFQGIEYVFGIVGI---PVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTK 70
+IA L+ G++ FG++ I P+++ A+ ++ I ++ R E A A A ++
Sbjct: 8 LIAAFLEQCGVKTAFGVISIHNMPILD-AIG-RRGKIRFVPARGEAGAVNMADAHARVSG 65
Query: 71 KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG 105
GV L +G G + G + A P+L I G
Sbjct: 66 GLGVALTSTGTGAGNAAGALVEALTAGTPLLHITG 100
|
Length = 544 |
| >gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A + F N PR +++G GTMGVGL +A+ + P
Sbjct: 411 VGQHQMWAAQFYRF----------NEPRRWINSGGLGTMGVGLPYAMGIKMA----HPDD 456
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
VVC+ G+ + EL T ++Y PV ++ +NN
Sbjct: 457 DVVCITGEGSIQMCIQELSTCLQYDTPVKIISLNN 491
|
Length = 587 |
| >gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PRH ++ G G LG+ + AAL P ++VV + GD F F EL ++R+
Sbjct: 47 PRHWINCGQAGP----LGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEELAVGAQHRI 102
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGI----E 283
P I V+VNN A+L +I+++ + D D +++ L F+ I
Sbjct: 103 PYIHVLVNN------------AYLGLIRQAQRAFDMDYQVN--------LAFENINSSEL 142
Query: 284 YVFGIVGIPVIELAMACQ 301
+G+ + V E + C+
Sbjct: 143 GGYGVDHVKVAE-GLGCK 159
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. Length = 202 |
| >gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P + +G GTMG GL AL + H P V+ + GD++ E+ T V+Y L
Sbjct: 420 PNRWMTSGGLGTMGYGLPAALGVQI--AH--PDALVIDIAGDASIQMCIQEMSTAVQYNL 475
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFG 287
PV + I+NN Y G W ++ + +S Y E + +A+A +G
Sbjct: 476 PVKIFILNNQ--YMGM---VRQWQQLLHGNRLSHSYTEAMPDFVKLAEA---------YG 521
Query: 288 IVGI 291
VGI
Sbjct: 522 AVGI 525
|
Length = 595 |
| >gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G G MG GL A+ AA P VV + GD +F + EL T+ L
Sbjct: 416 PRRWLTSGGLGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFIMNIQELATIHVENL 471
Query: 228 PVILVIVNN 236
PV ++++NN
Sbjct: 472 PVKIMVLNN 480
|
Length = 585 |
| >gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PRH ++ G G LG+ + AAL P + VV + GD F F EL ++ +
Sbjct: 408 PRHWINCGQAGP----LGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNI 463
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGI----E 283
P I V+VNN A+L +I+++ + D D + L F+ I
Sbjct: 464 PYIHVLVNN------------AYLGLIRQAQRAFDMDYCVQ--------LAFENINSSEV 503
Query: 284 YVFGIVGIPVIELAMACQ 301
+G+ + V E + C+
Sbjct: 504 NGYGVDHVKVAE-GLGCK 520
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. Length = 588 |
| >gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L + GTMG GL A+ A L P K VV + GD +F +G L T V +
Sbjct: 411 PRTFLTSSGMGTMGFGLPAAMGAKLA----RPDKVVVDLDGDGSFLMTGTNLATAVDEHI 466
Query: 228 PVILVIVNN 236
PVI VI +N
Sbjct: 467 PVISVIFDN 475
|
Length = 572 |
| >gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 18 ALKFQGIEYVFGIVG---IPVIELAMACQQEGIH---YIGMRNEQAACYAAQAIGY--LT 69
LK G++Y+F G P+IE + G ++ +E A + A GY +T
Sbjct: 16 LLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVA--ISMAHGYALVT 73
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG--------IGGFQEC- 120
KP +V G + GG+ NA + P+LV G EG I QE
Sbjct: 74 GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMR 133
Query: 121 PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG-------RSLLLNNLPRHRLD 173
Q L R Y K+ IG+ V +A++++ G R +L +P + D
Sbjct: 134 DQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREVLAEEVPEVKAD 193
Query: 174 AGTFG 178
AG
Sbjct: 194 AGRQM 198
|
Length = 569 |
| >gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 7e-05
Identities = 81/387 (20%), Positives = 155/387 (40%), Gaps = 74/387 (19%)
Query: 281 GIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 338
G+ VFG G I + A+ + ++ R+E+ A + A A T + GVCL SG
Sbjct: 17 GVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSG 76
Query: 339 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVEL-------ARPYCKY 390
PG +H G+ +A+++ P++ I G Q +GG +Q+ +V+L A + +
Sbjct: 77 PGAIHLLNGLYDAKLDHVPVVAIVGQ--QARAALGGHYQQ--EVDLQSLFKDVAGAFVQM 132
Query: 391 SARPPNI-HLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLP 449
P + HL V++AVR + + V+ + P ++ Q P T+
Sbjct: 133 VTVPEQLRHL----VDRAVR-TALAERTVTAVILPNDV------QELEYEPPPHAHGTVH 181
Query: 450 -WPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGK 508
G P V+ P +L++A+ ++ + +++G
Sbjct: 182 SGVGYT-------------RPRVV-----------PYDEDLRRAAEVLNAGRKVAILVGA 217
Query: 509 GAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA---RTHA----LQNADL 561
GA A E+++ +GK +PD P + T ++ D
Sbjct: 218 GAL--GATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDT 275
Query: 562 VLLLGARL---NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618
+L++G+ ++ G+A + +Q+D++ L V + D T++ L
Sbjct: 276 LLMVGSSFPYSEFLPKEGQA-------RGVQIDIDGRMLGLRYPMEVNLVGDAAETLRAL 328
Query: 619 KQMLSHTQ-RNWS---FSATSPWWQEL 641
+L + R+W + WW+ L
Sbjct: 329 LPLLERKKDRSWRERIEKWVARWWETL 355
|
Length = 597 |
| >gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 142 IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 201
+GQH A + F P + + +G GTMG GL A+ A L P +
Sbjct: 398 VGQHQMWAAQYYPFKTPDK----------WVTSGGLGTMGFGLPAAIGAQLA----KPDE 443
Query: 202 RVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
VV + GD F + EL + LPV +VI+NN
Sbjct: 444 TVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNN 478
|
Length = 571 |
| >gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
H T G +G GL A AA+ C P ++V+ +QGD + ++ L T R L
Sbjct: 375 APHDWLTLTGGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYTIQALWTQARENL 430
Query: 228 PVILVIVNNNG 238
V VI N
Sbjct: 431 DVTTVIFANRA 441
|
Length = 514 |
| >gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC 1018
LP+ +V++NN G YG T G P P + + K+ +G G
Sbjct: 73 LPITVVVLNN-GGYG----MTRGQQTPFGGGRYSGPDGKDLPPVDFAKLAEAYGAKGARV 127
Query: 1019 TTVPQIKQAMKKCLQTTTRPSLINI 1043
+ ++++A+K+ L+ P+LI++
Sbjct: 128 ESPEELEEALKEALE-HDGPALIDV 151
|
Length = 151 |
| >gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNN 236
+G++G L AL AAL AP +RV+ GD + + E+ T++R+ L I+ ++NN
Sbjct: 410 WGSIGYTLPAALGAALA----APDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNN 465
Query: 237 NG 238
+G
Sbjct: 466 DG 467
|
Length = 557 |
| >gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 23 GIEYVFGIVG--IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80
G+ VFG G I + A+ + ++ R+E+ A + A A T + GVCL SG
Sbjct: 17 GVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSG 76
Query: 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVEL-------ARPYCKY 132
PG +H G+ +A+++ P++ I G Q +GG +Q+ +V+L A + +
Sbjct: 77 PGAIHLLNGLYDAKLDHVPVVAIVGQ--QARAALGGHYQQ--EVDLQSLFKDVAGAFVQM 132
Query: 133 SARPPNI-HLIGQHVEKAVR 151
P + HL V++AVR
Sbjct: 133 VTVPEQLRHL----VDRAVR 148
|
Length = 597 |
| >gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 74
L+ +GI FG+ G + A + G I +I R+ + A + A+ GY G V
Sbjct: 13 LEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 70
Query: 75 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 134
C+ SGP G+ +A + P+L I G + FQ +A+P K +
Sbjct: 71 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAV 130
Query: 135 RPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
L+ + +++A L G+PG L+ +LP
Sbjct: 131 TVREAALVPRVLQQAFHLMRSGRPGPVLI--DLP 162
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. Length = 588 |
| >gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 9/162 (5%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRN-----EQAACYAAQAIGY 325
+ L G+E F G + A + MR E AA G
Sbjct: 9 DSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVP----RMRPVLCLFEGVVTGAADGYGR 64
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
+ KP V L+ GPGL + + NA+ P++ I G A +H AR
Sbjct: 65 IAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFAR 124
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANL 427
P ++ R + + V +AV+ + G++ L PA++
Sbjct: 125 PVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166
|
Length = 518 |
| >gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC 1018
LPV +V++NN G YG + T + P + K+ +G G
Sbjct: 453 LPVKIVVLNNGG-YGMVRQWQELFYGGRYSGTDLGNP-------DFVKLAEAYGAKGIRV 504
Query: 1019 TTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053
T ++++A+++ L + P LI+++++P P
Sbjct: 505 ETPEELEEALEEALA-SDGPVLIDVVVDPEEAVPP 538
|
Length = 550 |
| >gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 19 LKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPG---V 74
L+ +GI FG+ G + A ++ G I +I R+ + A + A+ GY G V
Sbjct: 14 LEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAE--GYTRATAGNIGV 71
Query: 75 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA 134
C+ SGP G+ +A + P+L I G + FQ +A+P K++
Sbjct: 72 CIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAV 131
Query: 135 RPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
L+ + +++A L G+PG L+ +LP
Sbjct: 132 TVREPALVPRVLQQAFHLMRSGRPGPVLI--DLP 163
|
Length = 592 |
| >gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G+MG+G+ ++ A+ + ++V+ GD F + MEL T +Y LPV ++I NN+
Sbjct: 396 GSMGIGVPGSVGASFAVEN---KRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNS 452
|
Length = 549 |
| >gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 160 RSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMEL 219
R L + + + F TMGVG+ A+AA L +Y P ++V + GD AF + +L
Sbjct: 391 RHLKMTPKNKWI-TSNLFATMGVGVPGAIAAKL---NY-PDRQVFNLAGDGAFSMTMQDL 445
Query: 220 ETLVRYRLPVILVIVNN 236
T V+Y LPVI ++ +N
Sbjct: 446 LTQVQYHLPVINIVFSN 462
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name [Energy metabolism, Aerobic]. Length = 575 |
| >gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PRH ++ G G LG+ + AAL P + VV + GD F F EL ++ L
Sbjct: 409 PRHWINCGQAGP----LGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNL 464
Query: 228 PVILVIVNNNGIYGGFDEATYAWLDIIKKS----NMSEDYDEELSANQVIAQALKFQGIE 283
P I V+VNN A+L +I+++ +M DY +L+ + + L G++
Sbjct: 465 PYIHVLVNN------------AYLGLIRQAQRAFDM--DYCVQLAFENINSPELNGYGVD 510
Query: 284 YV 285
+V
Sbjct: 511 HV 512
|
Length = 591 |
| >gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL- 68
+ + + LK G+++VFG+ G +P+++ + G+ ++G NE A YAA GY
Sbjct: 1 EYLLERLKQLGVKHVFGVPGDYNLPLLD--AIEENPGLRWVGNCNELNAGYAAD--GYAR 56
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS 106
K G + G G L G+A A P++ I G+
Sbjct: 57 VKGLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGA 94
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many the active sites lie between PP and PYR domains on different subunits. PDC catalyzes the conversion of pyruvate to acetaldehyde and CO2 in alcoholic fermentation. IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway in plants and various plant-associated bacteria, it catalyzes the decarboxylation of IPA to IAA. Also belonging to this group is Mycobacterium tuberculosis alpha-keto acid decarboxylase (MtKDC) which participates in amino acid degradation via the Ehrlich pathway, and Lactococcus lactis branched-chain keto acid decarboxylase (KdcA) an enzyme identified as being involved in cheese ripening, which exhibits a very broad substrate range in the decarboxylation and carboligation reactions. Length = 162 |
| >gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYL- 326
+ + + LK G+++VFG+ G +P+++ + G+ ++G NE A YAA GY
Sbjct: 1 EYLLERLKQLGVKHVFGVPGDYNLPLLD--AIEENPGLRWVGNCNELNAGYAAD--GYAR 56
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS 364
K G + G G L G+A A P++ I G+
Sbjct: 57 VKGLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGA 94
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many the active sites lie between PP and PYR domains on different subunits. PDC catalyzes the conversion of pyruvate to acetaldehyde and CO2 in alcoholic fermentation. IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway in plants and various plant-associated bacteria, it catalyzes the decarboxylation of IPA to IAA. Also belonging to this group is Mycobacterium tuberculosis alpha-keto acid decarboxylase (MtKDC) which participates in amino acid degradation via the Ehrlich pathway, and Lactococcus lactis branched-chain keto acid decarboxylase (KdcA) an enzyme identified as being involved in cheese ripening, which exhibits a very broad substrate range in the decarboxylation and carboligation reactions. Length = 162 |
| >gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-04
Identities = 67/314 (21%), Positives = 116/314 (36%), Gaps = 59/314 (18%)
Query: 275 QALKFQGIEYVFGIVGIPVIELAMACQQEGI-HYIGMRNEQAACYAAQAIGYLTKKPGVC 333
+ALK +G + +FGI G + ++ GI + +E A +AA A GV
Sbjct: 8 RALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVA 67
Query: 334 LVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSAR 393
V G G + +A A P++VI G+ EG G
Sbjct: 68 AVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGT-TEGNAGLL----------------- 109
Query: 394 PPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ--RINQSALVPTPKVLEPTLPWP 451
+H G+ ++ ++ + LD PA A+ R+ SA E + P
Sbjct: 110 ---LHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSA-------RELSRP-- 157
Query: 452 GIAELKQASQLILEAKAPLVIIGKVLEPTLP-WPG-IAELKQASRLILE----AKAPLVI 505
L+ ++ P+ P P WP L + +L A +P+++
Sbjct: 158 --VYLEIPRDMVNAEVEPV--------PDDPAWPVDRDALDACADEVLARMRSATSPVMM 207
Query: 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS---------AARTHAL 556
+ E ++ +P + T MG+G++ DA P A + +
Sbjct: 208 VCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADA-PTPPLGTYLGVAGDAELSRLV 266
Query: 557 QNADLVLLLGARLN 570
+ +D +LLLG L+
Sbjct: 267 EESDGLLLLGVILS 280
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. Length = 535 |
| >gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 169 RHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLP 228
R + +G GTMG G+ A+ A + P K V+ GD F + EL L Y++P
Sbjct: 409 RQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTNQELAILNIYKVP 464
Query: 229 VILVIVNNNGI 239
+ +V++NN+ +
Sbjct: 465 IKVVMLNNHSL 475
|
Length = 566 |
| >gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNN 237
G +G GL A+ AAL PG++ V + GD + EL T V+ +++V++N+
Sbjct: 405 GGIGQGLAMAIGAALA----GPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDG 460
Query: 238 GIYG 241
G YG
Sbjct: 461 G-YG 463
|
Length = 544 |
| >gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 164 LNNLPRHRLDAGTF--GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 221
+ R R+ G+F G+M L A+ A L PG++V+ + GD EL T
Sbjct: 393 ITPNGRRRV-IGSFRHGSMANALPHAIGAQLA----DPGRQVISMSGDGGLSMLLGELLT 447
Query: 222 LVRYRLPVILVIVNN 236
+ Y LPV +V+ NN
Sbjct: 448 VKLYDLPVKVVVFNN 462
|
Length = 578 |
| >gnl|CDD|232855 TIGR00173, menD, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 68/344 (19%), Positives = 118/344 (34%), Gaps = 68/344 (19%)
Query: 327 TKKPGVCLVV-SGPGLLHTFGGMANAQINCWPMLVIGGSCAQD--HE--GIGGFQECPQV 381
+ +P V +V SG + + + A + P++V+ D E G G Q Q
Sbjct: 60 SGRP-VAVVCTSGTAVANLLPAVIEAYYSGVPLIVLTA----DRPPELRGCGANQTIDQP 114
Query: 382 ELARPYCKYSA--RPPNIHL----IGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
L Y ++S P + V++AV + PG +++ P +
Sbjct: 115 GLFGSYVRWSVDLPLPEADEPLRYLRSTVDRAVAQAQGAPPGPVHINVP---FRE----- 166
Query: 436 ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
L P P +L+P PW V P L + +L
Sbjct: 167 PLYPDP-LLQPLQPW----------------LRSGVPTVSTGPPVLDPESLDDLWDR--- 206
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHA 555
+ +AK L+I G A AE L + + P L P+ G+ HP +
Sbjct: 207 LRQAKRGLIIAGPLAGAEDAE-ALAALAEALGWPLLADPLS-GLRGGPHPLVIDHYDL-L 263
Query: 556 LQNADLVLLLGARLNWILHFGRAP------RF--KSNVKIIQVDLNAE---ELHNSVQAA 604
L NA+L L L ++ FG P ++ + + VD + H++
Sbjct: 264 LANAELREELQPDL--VIRFGGPPVSKRLRQWLARQPAEYWVVDPDGGWLDPFHHATT-- 319
Query: 605 VAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648
+++ + L +L + W W E + K +
Sbjct: 320 -RLEASPAAFAEALAGLLKNPAAAW-----LDRWLEAEAKAREA 357
|
MenD was thought until recently to act as SHCHC synthase, but has recently been shown to act instead as SEPHCHC synthase. Conversion of SEPHCHC into SHCHC and pyruvate may occur spontaneously but is catalyzed efficiently, at least in some organisms, by MenH (see TIGR03695). 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 430 |
| >gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 167 LPRHRLDAGTFGTM-----GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 221
+PR G+ GLG+AL AAL P + V+ GD +F F E
Sbjct: 411 VPRQ-ARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAH 469
Query: 222 LV--RYRLPVILVIVNNNG 238
V RY LPV++V+ NN G
Sbjct: 470 WVAERYGLPVLVVVFNNGG 488
|
Length = 569 |
| >gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVN 235
T G++G GL A AA+ P ++VVC QGD ++ L T+ R L V +VI
Sbjct: 387 TGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVIFA 442
Query: 236 N 236
N
Sbjct: 443 N 443
|
Length = 518 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| KOG1185|consensus | 571 | 100.0 | ||
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 100.0 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 100.0 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 100.0 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 100.0 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 100.0 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 100.0 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 100.0 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 100.0 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 100.0 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 100.0 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 100.0 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 100.0 | |
| PLN02470 | 585 | acetolactate synthase | 100.0 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 100.0 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 100.0 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 100.0 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 100.0 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 100.0 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 100.0 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 100.0 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 100.0 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 100.0 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 100.0 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 100.0 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 100.0 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 100.0 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 100.0 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 100.0 | |
| PRK07586 | 514 | hypothetical protein; Validated | 100.0 | |
| PLN02573 | 578 | pyruvate decarboxylase | 100.0 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 100.0 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 100.0 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 100.0 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 100.0 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 100.0 | |
| KOG4166|consensus | 675 | 100.0 | ||
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 100.0 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 100.0 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 100.0 | |
| KOG1184|consensus | 561 | 100.0 | ||
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 100.0 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 100.0 | |
| KOG1185|consensus | 571 | 100.0 | ||
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 100.0 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 100.0 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 100.0 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 100.0 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK07586 | 514 | hypothetical protein; Validated | 100.0 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 100.0 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 100.0 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 100.0 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PLN02470 | 585 | acetolactate synthase | 100.0 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 100.0 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 100.0 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 100.0 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| KOG4166|consensus | 675 | 100.0 | ||
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 100.0 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 100.0 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 100.0 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 100.0 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 100.0 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 100.0 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 100.0 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 100.0 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 100.0 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 100.0 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 100.0 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 100.0 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 100.0 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 100.0 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 100.0 | |
| PLN02573 | 578 | pyruvate decarboxylase | 100.0 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 100.0 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 100.0 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 100.0 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 100.0 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 100.0 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 100.0 | |
| KOG1184|consensus | 561 | 100.0 | ||
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 100.0 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 100.0 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 100.0 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 100.0 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 100.0 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 99.98 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 99.97 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 99.97 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 99.97 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 99.97 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 99.95 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 99.95 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 99.94 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 99.93 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.92 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 99.91 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 99.9 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 99.87 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 99.87 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.87 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.86 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.86 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.85 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 99.84 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.84 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.83 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.83 | |
| PF00205 | 137 | TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr | 99.82 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.82 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.8 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.8 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.79 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.76 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.75 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.73 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.72 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.71 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.69 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.69 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.69 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.68 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.68 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.68 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.67 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.67 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.65 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.65 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.64 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.63 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.63 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.62 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.61 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.61 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.61 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.6 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.58 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.58 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.57 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.57 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.55 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.52 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.52 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.51 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.51 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.51 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.49 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.48 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.46 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.41 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.38 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.36 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.33 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.32 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.29 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.29 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.28 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.24 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.23 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.12 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 99.08 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 98.98 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 98.98 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 98.97 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 98.89 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 98.89 | |
| TIGR00315 | 162 | cdhB CO dehydrogenase/acetyl-CoA synthase complex, | 98.87 | |
| PRK00945 | 171 | acetyl-CoA decarbonylase/synthase complex subunit | 98.86 | |
| PRK05899 | 624 | transketolase; Reviewed | 98.81 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 98.81 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 98.78 | |
| PRK05899 | 624 | transketolase; Reviewed | 98.76 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 98.75 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 98.71 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 98.6 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 98.5 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 98.47 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 98.35 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 98.32 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 98.29 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 98.15 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 98.08 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 98.05 | |
| PRK12753 | 663 | transketolase; Reviewed | 98.05 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 98.04 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 98.01 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 98.0 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 98.0 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 97.97 | |
| PTZ00089 | 661 | transketolase; Provisional | 97.93 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 97.93 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 97.91 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 97.89 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 97.82 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 97.82 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 97.77 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 97.75 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 97.73 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 97.73 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 97.72 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 97.72 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 97.71 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 97.69 | |
| PLN02790 | 654 | transketolase | 97.63 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 97.62 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 97.6 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 97.59 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 97.59 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 97.58 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 97.57 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 97.55 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 97.5 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 97.48 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 97.47 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 97.45 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 97.41 | |
| PTZ00089 | 661 | transketolase; Provisional | 97.4 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 97.36 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 97.35 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 97.34 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 97.34 | |
| PRK12754 | 663 | transketolase; Reviewed | 97.31 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 97.29 | |
| PRK12753 | 663 | transketolase; Reviewed | 97.28 | |
| PLN02790 | 654 | transketolase | 97.25 | |
| COG1880 | 170 | CdhB CO dehydrogenase/acetyl-CoA synthase epsilon | 97.24 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 97.23 | |
| PRK12754 | 663 | transketolase; Reviewed | 97.14 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 97.11 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 97.0 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 96.99 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 96.93 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 96.84 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 96.79 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 96.76 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 96.7 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 96.52 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 96.48 | |
| KOG0523|consensus | 632 | 96.47 | ||
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 96.44 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 96.39 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 96.38 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 96.29 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 96.27 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 96.27 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 96.22 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 96.07 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 96.03 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 96.02 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 95.96 | |
| KOG0523|consensus | 632 | 95.94 | ||
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 95.85 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 95.79 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 95.78 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 95.68 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 95.66 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 95.57 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 95.51 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 95.32 | |
| PF02552 | 167 | CO_dh: CO dehydrogenase beta subunit/acetyl-CoA sy | 95.2 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 95.2 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 95.0 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 94.9 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 94.71 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 94.67 | |
| COG1029 | 429 | FwdB Formylmethanofuran dehydrogenase subunit B [E | 94.46 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 94.35 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 93.8 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 93.7 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 93.7 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 93.31 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 92.68 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 92.56 | |
| cd01408 | 235 | SIRT1 SIRT1: Eukaryotic group (class1) which inclu | 92.21 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 92.0 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 91.91 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 91.88 | |
| PRK11916 | 312 | electron transfer flavoprotein subunit YdiR; Provi | 91.84 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 91.77 | |
| PRK03363 | 313 | fixB putative electron transfer flavoprotein FixB; | 91.65 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 91.26 | |
| KOG0225|consensus | 394 | 91.24 | ||
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 90.98 | |
| PRK09444 | 462 | pntB pyridine nucleotide transhydrogenase; Provisi | 90.95 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 90.86 | |
| PLN00022 | 356 | electron transfer flavoprotein subunit alpha; Prov | 90.61 | |
| COG2025 | 313 | FixB Electron transfer flavoprotein, alpha subunit | 90.59 | |
| PRK14138 | 244 | NAD-dependent deacetylase; Provisional | 88.03 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 87.99 | |
| cd02761 | 415 | MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the | 87.77 | |
| smart00861 | 168 | Transket_pyr Transketolase, pyrimidine binding dom | 86.73 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 86.65 | |
| PF02233 | 463 | PNTB: NAD(P) transhydrogenase beta subunit; InterP | 85.04 | |
| PRK00481 | 242 | NAD-dependent deacetylase; Provisional | 84.15 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 83.3 | |
| TIGR00300 | 407 | conserved hypothetical protein TIGR00300. All memb | 82.98 | |
| KOG3954|consensus | 336 | 82.86 | ||
| PRK05333 | 285 | NAD-dependent deacetylase; Provisional | 82.82 | |
| cd01412 | 224 | SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea | 82.05 | |
| KOG0225|consensus | 394 | 81.22 | ||
| COG1282 | 463 | PntB NAD/NADP transhydrogenase beta subunit [Energ | 80.68 |
| >KOG1185|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-94 Score=800.29 Aligned_cols=560 Identities=44% Similarity=0.740 Sum_probs=509.1
Q ss_pred CcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 260 SEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 260 ~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
+++..+.+.+++.+|+.|+++||+++||+-|.++.++..+.+..|||+|.||||++|+|+|++|+|+|||||||+++|||
T Consensus 7 ~~~~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGP 86 (571)
T KOG1185|consen 7 KVDKASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGP 86 (571)
T ss_pred cccccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCC
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEE
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV 419 (1065)
|++|+++|++||+.+++|||+|.|..++.+.++|+||++||+.+++++||++.+++++++|+..+++|++.|++++|||+
T Consensus 87 Gl~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~ 166 (571)
T KOG1185|consen 87 GLTHALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPV 166 (571)
T ss_pred hHHHHHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhhhhcc-ccccCC-CCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHH
Q psy14416 420 YLDFPANLLAQRI-NQSALV-PTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497 (1065)
Q Consensus 420 ~L~iP~Dv~~~~~-~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~ 497 (1065)
|+++|.|+..... .+.+.. ..|.. ..+.+..+.|+++++++++++|+
T Consensus 167 yvD~P~d~v~~~~~~e~~~~~~~p~~-------------------------------~~p~P~i~~p~~s~i~~av~llk 215 (571)
T KOG1185|consen 167 YVDLPADVVLPSKMVEKEIDVSEPQP-------------------------------PIPLPPIPGPPPSQIQKAVQLLK 215 (571)
T ss_pred EEecccceeeeecccccccccCCCCC-------------------------------CCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999544332 222111 00000 01223367789999999999999
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 498 ~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
+||||+||+|.|+..+.+.++|++|.|++|+|++.++|+||++|++||++++.++..++++||+||++|++++|..++|.
T Consensus 216 ~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflptpMgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~ 295 (571)
T KOG1185|consen 216 SAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTPMGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGL 295 (571)
T ss_pred hcCCcEEEEecccccCccHHHHHHHHHhcCCCcccCcccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCeEEEecCChhhcccc-cccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNS-VQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~-~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+++|.++.++||||.+++.++.+ ..+++.|++|+..++.+|.+.+.. .+|......+|.+.+++..+++++..++..
T Consensus 296 ~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~--~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~ 373 (571)
T KOG1185|consen 296 PPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQD--QPWTWGPSTDWVKELREKDKQNEAAVEEKA 373 (571)
T ss_pred CCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcC--CCcccCCchhHHHHHHHHHHhhHHHHHHHh
Confidence 99999999999999999999987 789999999999999999999973 234445556999999999999888877652
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC-CcEEEEECCCCcC
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGIYG 735 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP-~d~ilv~d~G~~~ 735 (1065)
. ..+.|+ | ++.+++ .|.+.|| .|.|+|+|+++
T Consensus 374 -------------------~-------~~~~pL-----N---~~~~~~-----------~vre~L~~~d~ilVsEGan-- 406 (571)
T KOG1185|consen 374 -------------------A-------KKSTPL-----N---YYQVLQ-----------TVRELLPNDDTILVSEGAN-- 406 (571)
T ss_pred -------------------h-------ccCCCC-----c---HHHHHH-----------HHHHhcCCCCcEEEecCCc--
Confidence 1 456788 9 999999 9999999 89999999944
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
| |.+| |++++...| +.|.|.||
T Consensus 407 ---------------------------------------t----mdig--r~~l~~~~P-------r~rLDaGt------ 428 (571)
T KOG1185|consen 407 ---------------------------------------T----MDIG--RTLLPPRGP-------RRRLDAGT------ 428 (571)
T ss_pred ---------------------------------------c----hhhh--hhhccCCCc-------ccccCCcc------
Confidence 4 6666 777888888 99999999
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+|+| |+++||++ ||+++. |+++
T Consensus 429 --------------------fgTM----------------------------GVG~Gfal--aaa~~~--------P~~~ 450 (571)
T KOG1185|consen 429 --------------------FGTM----------------------------GVGLGFAL--AAALAA--------PDRK 450 (571)
T ss_pred --------------------cccc----------------------------ccchhHHH--HHHhhC--------CCCe
Confidence 6677 99999999 999999 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +|-||++| +|+.||+.|+ +|++||+++||+|||||| |+
T Consensus 451 V~---------------------------------~veGDsaF-GfSaME~ET~-----vR~~Lpvv~vV~NN~Giy-g~ 490 (571)
T KOG1185|consen 451 VV---------------------------------CVEGDSAF-GFSAMELETF-----VRYKLPVVIVVGNNNGIY-GL 490 (571)
T ss_pred EE---------------------------------EEecCccc-CcchhhHHHH-----HHhcCCeEEEEecCCccc-cc
Confidence 99 99999999 9999999999 999999999999999999 88
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcch
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQN 1055 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~ 1055 (1065)
+...++++. ++..+...|++++.++.||+++|++||.+|+.|+|++||+.+++++.+.+++|+||||.|+|.+.||++.
T Consensus 491 d~~~~~~I~-e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINVlI~p~~~rk~~~ 569 (571)
T KOG1185|consen 491 DDDGWKQIS-EQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINVLIGPTAFRKGQI 569 (571)
T ss_pred CcccHHHHh-hcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEEEecccccccccc
Confidence 888899988 7777888899999999999999999999999999999999999999999789999999999999999864
Q ss_pred h
Q psy14416 1056 F 1056 (1065)
Q Consensus 1056 ~ 1056 (1065)
|
T Consensus 570 ~ 570 (571)
T KOG1185|consen 570 F 570 (571)
T ss_pred c
Confidence 4
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-83 Score=769.75 Aligned_cols=529 Identities=28% Similarity=0.439 Sum_probs=443.6
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
+++++.+++.|+++||++|||+||..++++++++.+.+||+|.+|||++|+|||+||||+|||||||++|+|||++|+++
T Consensus 2 ~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~t 81 (550)
T COG0028 2 MTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLT 81 (550)
T ss_pred CcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHH
Confidence 68999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
||++|+.|++|||+|||+.++.+++++++|++||.+++++++||++++.+++++++.+++||+.|.++|||||||+||.|
T Consensus 82 gla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 82 GLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred HHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCH-HHHHHHHHHHHhCCCcEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGI-AELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~v~~~ae~L~~AkrPvIl 505 (1065)
++.++.+..... +. ......+.+.. +++++++++|++||||+|+
T Consensus 162 v~~~~~~~~~~~--~~---------------------------------~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl 206 (550)
T COG0028 162 VLAAEAEEPGPE--PA---------------------------------ILPPYRPAPPPPEAIRKAAELLAEAKRPVIL 206 (550)
T ss_pred Hhhccccccccc--cc---------------------------------ccccCCCCCCcHHHHHHHHHHHHhCCCCEEE
Confidence 999886543210 00 00111112222 8999999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.|+..+++.+++++|+|++++||++|+++||.+|++||+++|. ..+.++++||+||.+|++++++.+. +.
T Consensus 207 ~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~ 285 (550)
T COG0028 207 AGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-YS 285 (550)
T ss_pred ECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccc-hh
Confidence 999999999899999999999999999999999999999999883 3567888999999999999987665 32
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.|.++..+||||+|+.++++.+++++.|++|+..+|++|.+.++. ....|.++..+..+++.....+..
T Consensus 286 -~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~-- 354 (550)
T COG0028 286 -GFAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP--------ERAAWLEELLEARAAYRDLALEEL-- 354 (550)
T ss_pred -hhCCcCCEEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh--------cchHHHHHHHHHHHhhhhhhhhcc--
Confidence 233332399999999999999999999999999999999998862 146788877776655544433220
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
..... + +..++. .|.+.+|+|.+++.|.|++..|.
T Consensus 355 --------------------------~~~~~-----~---p~~v~~-----------~l~~~~~~daiv~~d~G~~~~w~ 389 (550)
T COG0028 355 --------------------------ADDGI-----K---PQYVIK-----------VLRELLPDDAIVVTDVGQHQMWA 389 (550)
T ss_pred --------------------------CCCcc-----C---HHHHHH-----------HHHHhCCCCeEEEeCCcHHHHHH
Confidence 01111 3 667888 99999999999999999988887
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
.+++.. ..| +.++.
T Consensus 390 a~~~~~-----------------------------------------------~~p-------~~~~~------------ 403 (550)
T COG0028 390 ARYFDF-----------------------------------------------YRP-------RRFLT------------ 403 (550)
T ss_pred HHhccc-----------------------------------------------CCC-------CcEEc------------
Confidence 655432 111 12222
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
||-.|+| |+++|+++ ||+++. |+++|+
T Consensus 404 --------------s~~~GtM----------------------------G~glPaAI--GAkla~--------P~r~Vv- 430 (550)
T COG0028 404 --------------SGGLGTM----------------------------GFGLPAAI--GAKLAA--------PDRKVV- 430 (550)
T ss_pred --------------CCCCccc----------------------------cchHHHHH--HHHhhC--------CCCcEE-
Confidence 3335666 99999999 999999 999999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.|||+|+ +|+++|+++||+||++ |+.+...
T Consensus 431 --------------------------------~i~GDG~F-~m~~qEL~Ta-----~r~~lpv~ivv~nN~~-~g~v~~~ 471 (550)
T COG0028 431 --------------------------------AIAGDGGF-MMNGQELETA-----VRYGLPVKIVVLNNGG-YGMVRQW 471 (550)
T ss_pred --------------------------------EEEcccHH-hccHHHHHHH-----HHhCCCEEEEEEECCc-cccchHH
Confidence 99999999 9999999999 9999999999999976 6666554
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.. . ...+. .....+.+.. |.|+|++||++++++++.+||+++|++++++ ++|+||||.||++....|
T Consensus 472 q~-~-~~~~~----~~~~~~~~~~-f~klAea~G~~g~~v~~~~el~~al~~al~~-~~p~lidv~id~~~~~~p 538 (550)
T COG0028 472 QE-L-FYGGR----YSGTDLGNPD-FVKLAEAYGAKGIRVETPEELEEALEEALAS-DGPVLIDVVVDPEEAVPP 538 (550)
T ss_pred HH-H-hcCCC----cceeecCCcc-HHHHHHHcCCeeEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCcccCCC
Confidence 22 1 11111 1112222333 9999999999999999999999999999997 999999999999944333
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-78 Score=731.78 Aligned_cols=531 Identities=26% Similarity=0.444 Sum_probs=440.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
..++++++|++.|+++||+++||+||+++.++++++.+.+|++|.|+||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~ 82 (542)
T PRK05858 3 QTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNG 82 (542)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHH
Confidence 35789999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++|+++|+.+++|||+|+|+.+....+++.+|++||.++|+++|||+.++++++++++.+++|++.|.++|+|||||+||
T Consensus 83 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 83 MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++.+....+ ... ........++++.+++++++|.+||||+|
T Consensus 163 ~dv~~~~~~~~~~~---~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi 208 (542)
T PRK05858 163 MDHAFSMADDDGRP---GAL-------------------------------TELPAGPTPDPDALARAAGLLAEAQRPVI 208 (542)
T ss_pred hhhhhccccccccc---ccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Confidence 99998876532111 000 00111234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSN 584 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~ 584 (1065)
++|.+++.+++.+++++|||++|+||++|+++||.+|++||++++....++++++|+||.+|+++++....++ +.++
T Consensus 209 l~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~---~~~~ 285 (542)
T PRK05858 209 MAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV---FGGT 285 (542)
T ss_pred EECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc---cCCC
Confidence 9999998778889999999999999999999999999999999998888899999999999999876543333 3345
Q ss_pred CeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhhccCC
Q psy14416 585 VKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIVNNNG 664 (1065)
Q Consensus 585 ~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1065)
.++||||.|+..+++.+..++.+.+|+.++|++|.+.+..+ .....|.+.+++..+.+.....+..
T Consensus 286 ~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------- 351 (542)
T PRK05858 286 AQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGGDR------TDHQGWIEELRTAETAARARDAAEL-------- 351 (542)
T ss_pred CEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcccc------cCcHHHHHHHHHHHHhhhhhhhhhc--------
Confidence 78999999999999999999999999999999999877521 1234677776655443322221110
Q ss_pred ccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccccchhh
Q psy14416 665 IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYAS 744 (1065)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~~~~~~ 744 (1065)
. ....|+ + +..+++ .|.+.+|++.+++.|.|++..|...++..
T Consensus 352 ----------~--------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~g~~~~~~~~~~~~ 394 (542)
T PRK05858 352 ----------A--------DDRDPI-----H---PMRVYG-----------ELAPLLDRDAIVIGDGGDFVSYAGRYIDP 394 (542)
T ss_pred ----------c--------CCCCCc-----C---HHHHHH-----------HHHHhcCCCeEEEECCcHHHHHHHHHccc
Confidence 0 112345 6 677888 99999999999999998766554322210
Q ss_pred hccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccceeeccc
Q psy14416 745 IVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 824 (1065)
Q Consensus 745 ~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 824 (1065)
..| +.
T Consensus 395 -----------------------------------------------~~p-------~~--------------------- 399 (542)
T PRK05858 395 -----------------------------------------------YRP-------GC--------------------- 399 (542)
T ss_pred -----------------------------------------------cCC-------CC---------------------
Confidence 011 00
Q ss_pred eEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCccc
Q psy14416 825 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 904 (1065)
Q Consensus 825 ~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 904 (1065)
+.++|.+|+| |+++|+++ ||+++. |+++||
T Consensus 400 -----~~~~~~~gsm----------------------------G~~lp~ai--Ga~la~--------p~r~vv------- 429 (542)
T PRK05858 400 -----WLDPGPFGCL----------------------------GTGPGYAL--AARLAR--------PSRQVV------- 429 (542)
T ss_pred -----EEeCCCcccc----------------------------ccchhHHH--HHHHhC--------CCCcEE-------
Confidence 1123445666 99999998 999998 999999
Q ss_pred CCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHh
Q psy14416 905 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIV 984 (1065)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~ 984 (1065)
+++|||+| +|+.++++|+ +|+++|+++||+||++ |+.... .+...+
T Consensus 430 --------------------------~i~GDG~f-~~~~~eL~Ta-----~~~~lpi~ivV~NN~~-y~~~~~-~~~~~~ 475 (542)
T PRK05858 430 --------------------------LLQGDGAF-GFSLMDVDTL-----VRHNLPVVSVIGNNGI-WGLEKH-PMEALY 475 (542)
T ss_pred --------------------------EEEcCchh-cCcHHHHHHH-----HHcCCCEEEEEEeCCc-hhhHHH-HHHHhc
Confidence 99999999 9999999999 9999999999999976 554322 122211
Q ss_pred hcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 985 ESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
+. .......+++||.++|++||+++.+|+|.+||+++|+++++. ++|+||||.+++++
T Consensus 476 --~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIev~~~~~~ 533 (542)
T PRK05858 476 --GY----DVAADLRPGTRYDEVVRALGGHGELVTVPAELGPALERAFAS-GVPYLVNVLTDPSV 533 (542)
T ss_pred --CC----ccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCcEEEEEEECCCc
Confidence 11 111234478999999999999999999999999999999987 89999999999885
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-78 Score=734.45 Aligned_cols=524 Identities=23% Similarity=0.308 Sum_probs=431.9
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
|+++++|++.|+++||++|||+||+++.+|++++.+.+|++|.|+||++|+|||+||+|+||+|+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~ 80 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT 80 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 47899999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|+++|+.+++|||+|+|+++.+..+++++|++||..+|+++|||++++++++++++.+++|++.|.+++||||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++++.+. . . ........++++.+++++++|++||||+|++
T Consensus 161 v~~~~~~~~~-~---~---------------------------------~~~~~~~~~~~~~l~~~~~~L~~AkrPvIl~ 203 (548)
T PRK08978 161 IQLAEGELEP-H---L---------------------------------TTVENEPAFPAAELEQARALLAQAKKPVLYV 203 (548)
T ss_pred hhhccccccc-c---c---------------------------------cccCCCCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 9877754211 0 0 0011123467888999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.++...++.+++++|||++|+||++|+++||.+|++||+++|. ....++++||+||.+|+++++..+. +..
T Consensus 204 G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~ 282 (548)
T PRK08978 204 GGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTG-KLN 282 (548)
T ss_pred CCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccC-Ccc
Confidence 99998788889999999999999999999999999999999973 3556788999999999999875443 333
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
.+.++.++||||.|+..+++.+..++.|++|++.+|++|.+.++ ...|.++++..++.......
T Consensus 283 ~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~------ 346 (548)
T PRK08978 283 TFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPLN----------IDAWRQHCAQLRAEHAWRYD------ 346 (548)
T ss_pred ccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc----------chHHHHHHHHHHHhCchhcc------
Confidence 35566789999999999999999999999999999999987653 24577766554332211110
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 739 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~ 739 (1065)
....++ + +..+++ .|.+.+|++.+++.|.|++..|..
T Consensus 347 ------------------------~~~~~~-----~---~~~~~~-----------~l~~~~~~~~iiv~d~g~~~~~~~ 383 (548)
T PRK08978 347 ------------------------HPGEAI-----Y---APALLK-----------QLSDRKPADTVVTTDVGQHQMWVA 383 (548)
T ss_pred ------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCcEEEecCcHHHHHHH
Confidence 011245 6 667888 999999999999999987555533
Q ss_pred cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccce
Q psy14416 740 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 819 (1065)
Q Consensus 740 ~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 819 (1065)
.++.. ..| +.++
T Consensus 384 ~~~~~-----------------------------------------------~~~-------~~~~-------------- 395 (548)
T PRK08978 384 QHMRF-----------------------------------------------TRP-------ENFI-------------- 395 (548)
T ss_pred Hhccc-----------------------------------------------CCC-------CeEE--------------
Confidence 22110 000 0000
Q ss_pred eeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEc
Q psy14416 820 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 899 (1065)
Q Consensus 820 ~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 899 (1065)
+++-+|+| |+++++++ ||+++. |+++|+
T Consensus 396 ------------~~~~~g~m----------------------------G~glpaAi--Ga~la~--------p~~~vv-- 423 (548)
T PRK08978 396 ------------TSSGLGTM----------------------------GFGLPAAI--GAQVAR--------PDDTVI-- 423 (548)
T ss_pred ------------eCCchhhh----------------------------hchHHHHH--HHHHhC--------CCCcEE--
Confidence 12224555 99999998 999998 999999
Q ss_pred cCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhh
Q psy14416 900 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEAT 979 (1065)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~ 979 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||+| |+.+...+
T Consensus 424 -------------------------------~i~GDG~f-~~~~~eL~ta-----~~~~l~v~ivV~NN~~-~~~~~~~~ 465 (548)
T PRK08978 424 -------------------------------CVSGDGSF-MMNVQELGTI-----KRKQLPVKIVLLDNQR-LGMVRQWQ 465 (548)
T ss_pred -------------------------------EEEccchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cHHHHHHH
Confidence 99999999 9999999999 9999999999999988 44332221
Q ss_pred HhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 980 YASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.....+. ...+.+.+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++..
T Consensus 466 --~~~~~~~----~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~id~~~~~~ 531 (548)
T PRK08978 466 --QLFFDER----YSETDLSDNPDFVMLASAFGIPGQTITRKDQVEAALDTLLNS-EGPYLLHVSIDELENVW 531 (548)
T ss_pred --HHHhCCc----ceecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCccccc
Confidence 1111111 111333467999999999999999999999999999999986 89999999999887643
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-78 Score=733.71 Aligned_cols=543 Identities=22% Similarity=0.341 Sum_probs=435.7
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||+||||+||+.+.++++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n 81 (572)
T PRK08979 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATN 81 (572)
T ss_pred CcccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhH
Confidence 34689999999999999999999999999999999965 57999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+++|++||.++|+++|||+.++++++++++.+++|++.|+++++|||||+|
T Consensus 82 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (572)
T PRK08979 82 TITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDL 161 (572)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++.....+.+... ....+...++++.+++++++|++||||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~~-------------------------------~~~~p~~~~~~~~i~~~~~~L~~A~rPv 210 (572)
T PRK08979 162 PKDCLNPAILHPYEYPESIKM-------------------------------RSYNPTTSGHKGQIKRGLQALLAAKKPV 210 (572)
T ss_pred CHhHhhhhhcccccCCccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999988776431100000000 0001112346788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..
T Consensus 211 il~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~ 290 (572)
T PRK08979 211 LYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNN 290 (572)
T ss_pred EEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCccccCc
Confidence 99999998888889999999999999999999999999999999883 45678899999999999998765544
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++++..++.|++|++.+|++|.+.+..+...........|.++++.......... .
T Consensus 291 ~~-~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 366 (572)
T PRK08979 291 LE-KYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLAY--D- 366 (572)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchhc--c-
Confidence 42 2456678999999999999999999999999999999999877532111011112356665543322111000 0
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|+|.+++.|+|++..
T Consensus 367 ---------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ivv~d~G~~~~ 400 (572)
T PRK08979 367 ---------------------------KSSERI-----K---PQQVIE-----------TLYKLTNGDAYVASDVGQHQM 400 (572)
T ss_pred ---------------------------CCCCCc-----C---HHHHHH-----------HHHHhcCCCeEEEECCcHHHH
Confidence 011245 6 677888 999999999999999998666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| +.++
T Consensus 401 ~~~~~~~~-----------------------------------------------~~~-------~~~~----------- 415 (572)
T PRK08979 401 FAALYYPF-----------------------------------------------DKP-------RRWI----------- 415 (572)
T ss_pred HHHHhcCc-----------------------------------------------CCC-------CeEE-----------
Confidence 65433221 000 0011
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|.+|+| |+++|+++ ||+++. |+++|
T Consensus 416 ---------------~~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~v 442 (572)
T PRK08979 416 ---------------NSGGLGTM----------------------------GFGLPAAM--GVKFAM--------PDETV 442 (572)
T ss_pred ---------------ccCCcccc----------------------------cchhhHHH--hhhhhC--------CCCeE
Confidence 13335555 99999999 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.+||+|+ +|+++|+++||+||+| |+.+.
T Consensus 443 v---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpv~~vV~NN~~-y~~i~ 482 (572)
T PRK08979 443 V---------------------------------CVTGDGSI-QMNIQELSTA-----LQYDIPVKIINLNNRF-LGMVK 482 (572)
T ss_pred E---------------------------------EEEcchHh-hccHHHHHHH-----HHcCCCeEEEEEeCCc-cHHHH
Confidence 9 99999999 9999999999 9999999999999987 44333
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.. ......+... .....+.+||.++|++||+++++|++.+||+++|+++++..++|.||||.+++++...
T Consensus 483 ~~--q~~~~~~~~~----~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~~ 552 (572)
T PRK08979 483 QW--QDMIYQGRHS----HSYMDSVPDFAKIAEAYGHVGIRISDPDELESGLEKALAMKDRLVFVDINVDETEHVY 552 (572)
T ss_pred HH--HHHHhCCccc----ccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccccC
Confidence 21 1111122111 1112235799999999999999999999999999999974489999999999877543
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-78 Score=735.08 Aligned_cols=540 Identities=19% Similarity=0.250 Sum_probs=434.4
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHh-CCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~t-gkpgv~~~tsGpG~~N 343 (1065)
.++++++|++.|+++||+|+||+||..+.+|++++.+ .+|++|.|+||++|+|||+||+|+| |+|+||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 4689999999999999999999999999999999965 4799999999999999999999999 9999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||.++|+++|||+.++.+++++.+.|++|++.|+++|||||||+|
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 161 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDL 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++..... .. ......+.++++.+++++++|++||||+
T Consensus 162 P~Dv~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPv 206 (588)
T TIGR01504 162 PFDVQVAEIEFDPDT---YE--------------------------------PLPVYKPAATRAQIEKAVEMLNAAERPL 206 (588)
T ss_pred CcchhhcccCCcccc---cc--------------------------------cccCCCCCCCHHHHHHHHHHHHhCCCcE
Confidence 999988776421100 00 0011122357889999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
||+|.++.++++.++|++|+|++|+||++|+++||++|++||+++|. ...+++++||+||.+|+++++..+.
T Consensus 207 Il~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~ 286 (588)
T TIGR01504 207 IVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTG 286 (588)
T ss_pred EEECCCcchhhhHHHHHHHHHHhCCCeEEcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccC
Confidence 99999999888999999999999999999999999999999999872 3456789999999999999876554
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
++. .+.++.++||||.|+..+++++..++.|++|+..+|++|.+.+...........+..|.+.+.+.+....+.. .
T Consensus 287 ~~~-~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 363 (588)
T TIGR01504 287 SVD-VYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKT--H 363 (588)
T ss_pred ccc-ccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcccc--c
Confidence 442 2456678999999999999999999999999999999998876421100001123456655544322211110 0
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
.+..++ + +..+++ .|.+.||+|.+|+.|+|++.
T Consensus 364 ----------------------------~~~~~l-----~---p~~~~~-----------~l~~~l~~d~ivv~D~G~~~ 396 (588)
T TIGR01504 364 ----------------------------FDNVPV-----K---PQRVYE-----------EMNKAFGRDVCYVTTIGLSQ 396 (588)
T ss_pred ----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEEECCcHHH
Confidence 112245 6 778888 99999999999999999876
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| +.++.
T Consensus 397 ~~~~~~~~~-----------------------------------------------~~p-------~~~~~--------- 413 (588)
T TIGR01504 397 IAGAQMLHV-----------------------------------------------YKP-------RHWIN--------- 413 (588)
T ss_pred HHHHHhccc-----------------------------------------------cCC-------CcEEe---------
Confidence 665433221 011 01111
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+|-+|+| |+++|+++ ||+++. |+++
T Consensus 414 -----------------~~~~gsm----------------------------G~glpaai--Ga~lA~--------pdr~ 438 (588)
T TIGR01504 414 -----------------CGQAGPL----------------------------GWTIPAAL--GVCAAD--------PKRN 438 (588)
T ss_pred -----------------CCccccc----------------------------cchHhHHH--hhhhhC--------CCCc
Confidence 2224444 99999999 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.+||+|+ +|+++|+++||+||+| |+..
T Consensus 439 Vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpvv~iV~NN~~-yg~i 478 (588)
T TIGR01504 439 VV---------------------------------ALSGDYDF-QFMIEELAVG-----AQHNIPYIHVLVNNAY-LGLI 478 (588)
T ss_pred EE---------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-hHHH
Confidence 99 99999999 9999999999 9999999999999987 4432
Q ss_pred chhhHhHHhhcCCc------ccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHh---cCCCCEEEEEEeC
Q psy14416 976 DEATYASIVESGEV------TTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQ---TTTRPSLINILIN 1046 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~li~~~~~ 1046 (1065)
.... ... .+.. ....+.....+++||.++|++||+++.+|++.+||+++|+++++ ..++|.||||.++
T Consensus 479 ~~~q--~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~ 555 (588)
T TIGR01504 479 RQAQ--RAF-DMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVEVILE 555 (588)
T ss_pred HHHH--HHh-cccccceeeccccccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 2211 110 0110 00011122234699999999999999999999999999999995 2389999999999
Q ss_pred CCCCC
Q psy14416 1047 PSADR 1051 (1065)
Q Consensus 1047 ~~~~~ 1051 (1065)
+++..
T Consensus 556 ~~~~~ 560 (588)
T TIGR01504 556 RVTNI 560 (588)
T ss_pred cccCC
Confidence 88873
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-78 Score=736.96 Aligned_cols=544 Identities=20% Similarity=0.248 Sum_probs=436.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHh-CCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~t-gkpgv~~~tsGpG~~ 342 (1065)
.+++++++|++.|+++||+|+||+||+++.+|+++++++ +|++|.||||++|+|||+||+|+| |+|+||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~ 81 (591)
T PRK11269 2 AKMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT 81 (591)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHH
Confidence 357899999999999999999999999999999999764 799999999999999999999999 999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++|+++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+
T Consensus 82 N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 161 (591)
T PRK11269 82 DMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLID 161 (591)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++..... +. ......+.++++.+++++++|++||||
T Consensus 162 iP~Dv~~~~~~~~~~~--~~---------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrP 206 (591)
T PRK11269 162 LPFDVQVAEIEFDPDT--YE---------------------------------PLPVYKPAATRAQIEKALEMLNAAERP 206 (591)
T ss_pred eChhhhhccccccccc--cc---------------------------------ccccCCCCCCHHHHHHHHHHHHhCCCc
Confidence 9999988775421100 00 001112346788899999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
+||+|.++.++++.+++++|+|++|+||++|+++||++|++||+++|. ...+++++||+||.+|+++.+..+
T Consensus 207 vil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~ 286 (591)
T PRK11269 207 LIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHT 286 (591)
T ss_pred EEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCcccc
Confidence 999999998888899999999999999999999999999999999872 235678899999999999988665
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.++. .+.++.++||||.|+..+++.+..++.+++|+..+|++|.+.+++.........+..|.+.++...+......+
T Consensus 287 ~~~~-~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 364 (591)
T PRK11269 287 GSVE-VYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRKTH- 364 (591)
T ss_pred Cchh-hcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhhcc-
Confidence 4432 24556789999999999999999999999999999999998775211000012235677666554332211100
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
....|+ + +..+++ .|.+.+|++++++.|.|++
T Consensus 365 -----------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~d~ivv~d~g~~ 396 (591)
T PRK11269 365 -----------------------------FDNVPI-----K---PQRVYE-----------EMNKAFGRDTCYVSTIGLS 396 (591)
T ss_pred -----------------------------CCCCCc-----C---HHHHHH-----------HHHHhcCCCcEEEECCcHH
Confidence 012245 6 777888 9999999999999999876
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|...++.. ..| +.++
T Consensus 397 ~~~~~~~~~~-----------------------------------------------~~p-------~~~~--------- 413 (591)
T PRK11269 397 QIAAAQFLHV-----------------------------------------------YKP-------RHWI--------- 413 (591)
T ss_pred HHHHHHhccc-----------------------------------------------CCC-------CcEE---------
Confidence 5553322210 001 1111
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
|+|-+|+| |+++++++ ||+++. |++
T Consensus 414 -----------------~~~~~G~m----------------------------G~glpaAi--Ga~la~--------p~r 438 (591)
T PRK11269 414 -----------------NCGQAGPL----------------------------GWTIPAAL--GVRAAD--------PDR 438 (591)
T ss_pred -----------------eCCccccc----------------------------cchhhhHH--hhhhhC--------CCC
Confidence 23335555 99999999 999998 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.
T Consensus 439 ~Vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~lpv~~vV~NN~~-~g~ 478 (591)
T PRK11269 439 NVV---------------------------------ALSGDYDF-QFLIEELAVG-----AQFNLPYIHVLVNNAY-LGL 478 (591)
T ss_pred cEE---------------------------------EEEccchh-hcCHHHHHHH-----HHhCCCeEEEEEeCCc-hhH
Confidence 999 99999999 9999999999 9999999999999987 443
Q ss_pred CchhhHhHHhhcCCc-ccC---CCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 975 FDEATYASIVESGEV-TTV---SPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
+.... ....+.... ..+ ..+....+++||.++|++||+++++|+|.+||+++|+++++ ..++|.||||.+++
T Consensus 479 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 479 IRQAQ-RAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred HHHHH-HHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 32211 110000000 000 11122346799999999999999999999999999999985 23899999999998
Q ss_pred CCCCC
Q psy14416 1048 SADRK 1052 (1065)
Q Consensus 1048 ~~~~~ 1052 (1065)
++..+
T Consensus 558 ~~~~~ 562 (591)
T PRK11269 558 VTNIS 562 (591)
T ss_pred ccCCC
Confidence 87543
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=731.01 Aligned_cols=543 Identities=22% Similarity=0.347 Sum_probs=435.2
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||++|||+||+.+.++++++.+ ++|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n 81 (574)
T PRK07979 2 EMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhh
Confidence 45789999999999999999999999999999999976 58999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+.+|++||..+++++|||+.++++++++.+.+++|++.|.++++|||||+|
T Consensus 82 ~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~i 161 (574)
T PRK07979 82 AITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDL 161 (574)
T ss_pred hHHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++.....+.+... ........++++.+++++++|++||||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~i~~a~~~L~~A~rPv 210 (574)
T PRK07979 162 PKDILNPANKLPYVWPESVSM-------------------------------RSYNPTTQGHKGQIKRALQTLVAAKKPV 210 (574)
T ss_pred ChhhhhhhhccccccCccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCCE
Confidence 999987654321000000000 0001122356888999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..
T Consensus 211 i~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~ 290 (574)
T PRK07979 211 VYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNN 290 (574)
T ss_pred EEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCC
Confidence 99999998888899999999999999999999999999999999873 45678899999999999998766544
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++.+..++.|++|+..+|++|.+.+..............|.+.++..... .....
T Consensus 291 ~~-~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 365 (574)
T PRK07979 291 LA-KYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR----QCLKY 365 (574)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHh----Chhhc
Confidence 42 24556789999999999999999999999999999999998775311111111224565544433221 10000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
. ....++ + +..+++ .|.+.+|+|.+++.|+|++..
T Consensus 366 ------------------~--------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ivv~d~G~~~~ 400 (574)
T PRK07979 366 ------------------D--------THSEKI-----K---PQAVIE-----------TLWRLTKGDAYVTSDVGQHQM 400 (574)
T ss_pred ------------------c--------CCCCCc-----C---HHHHHH-----------HHHhhcCCCEEEEeCCcHHHH
Confidence 0 011245 6 677888 999999999999999998766
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| ..++
T Consensus 401 ~~~~~~~~-----------------------------------------------~~p-------~~~~----------- 415 (574)
T PRK07979 401 FAALYYPF-----------------------------------------------DKP-------RRWI----------- 415 (574)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeEE-----------
Confidence 65433221 001 0011
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|-+|+| |+++|+++ ||+++. |+++|
T Consensus 416 ---------------~~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~v 442 (574)
T PRK07979 416 ---------------NSGGLGTM----------------------------GFGLPAAL--GVKMAL--------PEETV 442 (574)
T ss_pred ---------------eCCCccch----------------------------hhHHHHHH--HHHHhC--------CCCeE
Confidence 13335555 99999999 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 443 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~r~~l~v~ivV~NN~~-yg~i~ 482 (574)
T PRK07979 443 V---------------------------------CVTGDGSI-QMNIQELSTA-----LQYELPVLVLNLNNRY-LGMVK 482 (574)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEeCch-hhHHH
Confidence 9 99999999 9999999999 9999999999999987 55433
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhc--CCCCEEEEEEeCCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT--TTRPSLINILINPSADRK 1052 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~li~~~~~~~~~~~ 1052 (1065)
... .....+.. ......+++||.++|++||+++++|+|.+||+++|+++++. .++|.||||.++++++..
T Consensus 483 ~~q--~~~~~~~~----~~~~~~~~~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~~~~~~ 554 (574)
T PRK07979 483 QWQ--DMIYSGRH----SQSYMQSLPDFVRLAEAYGHVGIQISHPDELESKLSEALEQVRNNRLVFVDVTVDGSEHVY 554 (574)
T ss_pred HHH--HHhcCCcc----ccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccCCCCcEEEEEEECCccCcC
Confidence 221 11111111 11112245799999999999999999999999999999874 389999999999877543
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-77 Score=728.25 Aligned_cols=546 Identities=23% Similarity=0.314 Sum_probs=433.5
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||+++||+||+.+.+|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N 81 (574)
T PRK06466 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 34689999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+..+.+++++|++||..+|+++|||+.++.+++++.+.+++|++.|+++|||||||+|
T Consensus 82 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~i 161 (574)
T PRK06466 82 AITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDI 161 (574)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.+..+.....+.+... ........++.+.+++++++|.+||||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 210 (574)
T PRK06466 162 PKDMTNPAEKFEYEYPKKVKL-------------------------------RSYSPAVRGHSGQIRKAVEMLLAAKRPV 210 (574)
T ss_pred CHhHhhhhhccccccCccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999975432211000000000 0001112346778999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HHHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||++|+++||.+|++||+++| ....+++++||+||.+|+++++..+.+
T Consensus 211 il~G~g~~~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~ 290 (574)
T PRK06466 211 IYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNG 290 (574)
T ss_pred EEECCCccccChHHHHHHHHHHhCCCEEEcCccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCccccCc
Confidence 9999999888888999999999999999999999999999999987 245567899999999999998866544
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++.+..++.+.+|+..+|++|.+.++............+|.+.++...........+.
T Consensus 291 ~~-~~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 368 (574)
T PRK06466 291 PA-KFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDK- 368 (574)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhccc-
Confidence 43 2455678999999999999999999999999999999998877521110001122356555543332211000000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
.+..++ + +..+++ .|.+.+|+|.+++.|.|++..
T Consensus 369 ---------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iv~~d~g~~~~ 402 (574)
T PRK06466 369 ---------------------------GDGGII-----K---PQQVVE-----------TLYEVTNGDAYVTSDVGQHQM 402 (574)
T ss_pred ---------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHH
Confidence 012245 6 677888 999999999999999988666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| +.++
T Consensus 403 ~~~~~~~~-----------------------------------------------~~p-------~~~~----------- 417 (574)
T PRK06466 403 FAAQYYKF-----------------------------------------------NKP-------NRWI----------- 417 (574)
T ss_pred HHHHhccc-----------------------------------------------cCC-------CcEE-----------
Confidence 64432221 011 1111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|-+|+| |+++|+++ ||+++. |+++|
T Consensus 418 ---------------~~~~~gsm----------------------------G~glpaAi--Ga~la~--------p~r~V 444 (574)
T PRK06466 418 ---------------NSGGLGTM----------------------------GFGLPAAM--GVKLAF--------PDQDV 444 (574)
T ss_pred ---------------cCCCcchh----------------------------hchHHHHH--HHHHhC--------CCCeE
Confidence 23335555 99999999 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 445 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~r~~lpv~ivV~NN~~-y~~i~ 484 (574)
T PRK06466 445 A---------------------------------CVTGEGSI-QMNIQELSTC-----LQYGLPVKIINLNNGA-LGMVR 484 (574)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cHHHH
Confidence 9 99999999 9999999999 9999999999999988 44333
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.. ......+.. +.....+.+||.++|++||+++++++|.+||+++|+++++..++|+||||.+++++...+
T Consensus 485 ~~--q~~~~~~~~----~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~p~lIev~i~~~~~~~~ 555 (574)
T PRK06466 485 QW--QDMQYEGRH----SHSYMESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDIYVDRSEHVYP 555 (574)
T ss_pred HH--HHHhcCCce----eecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccccCC
Confidence 21 111111211 111122458999999999999999999999999999998733899999999998775543
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-77 Score=725.46 Aligned_cols=547 Identities=35% Similarity=0.584 Sum_probs=442.4
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||++|||+||..+.++.+++.+.+|++|.||||++|+|||+||+|+||+|+||++|+|||++|+++
T Consensus 3 ~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~ 82 (554)
T TIGR03254 3 TDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLT 82 (554)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHH
Confidence 57899999999999999999999999999988887778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCC--CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~--~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
||++|+.+++|||+|+|+.+... .+++.+|++||.++|+++|||++++++++++++.+++|++.|+++|||||||+||
T Consensus 83 gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 83 ALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999874 3678899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++..... .+. |+ .........++.+.+++++++|++||||+|
T Consensus 163 ~Dv~~~~~~~~~~~-~~~-------~~-----------------------~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi 211 (554)
T TIGR03254 163 AAVLGQTMEAEKAK-KTL-------VK-----------------------VVDPAPKQLPSPDSVDRAVELLKDAKRPLI 211 (554)
T ss_pred HHHhhccccccccc-ccc-------cc-----------------------ccCCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 99998887532110 000 00 000111234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSN 584 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~ 584 (1065)
++|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|....+++++||+||.+|+++++..+.++...|.++
T Consensus 212 ~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~ 291 (554)
T TIGR03254 212 LLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGED 291 (554)
T ss_pred EECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCC
Confidence 99999988888999999999999999999999999999999999988888899999999999999887666554445567
Q ss_pred CeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhhccCC
Q psy14416 585 VKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIVNNNG 664 (1065)
Q Consensus 585 ~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1065)
+++||||.|+..++..++.+..|.+|++.+|++|.+.++... ......|.+++...++.......+..
T Consensus 292 ~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 359 (554)
T TIGR03254 292 AKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGG----VKPPADWRNAIKTKSEKNVAKMAERL-------- 359 (554)
T ss_pred CcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhhhcc----ccchHHHHHHHHHHHHhchhhhhhhc--------
Confidence 789999999999999999999999999999999999885210 11235677666544333221111110
Q ss_pred ccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC--cEEEEECCCCcCcccccch
Q psy14416 665 IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV--ILVIVNNNGIYGGFDETTY 742 (1065)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~--d~ilv~d~G~~~~~~~~~~ 742 (1065)
. ....|+ + +..+++ .|.+.+|+ +.+++.|+|++..|...++
T Consensus 360 ----------~--------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~~~ivv~d~~~~~~~~~~~~ 402 (554)
T TIGR03254 360 ----------S--------ASESPM-----N---YHGALE-----------AIRDVLKDNPDIYLVNEGANTLDLARNVI 402 (554)
T ss_pred ----------c--------cCCCCc-----C---HHHHHH-----------HHHHhcCCCCCEEEEeCCchHHHHHHHhc
Confidence 0 012356 6 777888 99999974 7888888876544433211
Q ss_pred hhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccceeec
Q psy14416 743 ASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTV 822 (1065)
Q Consensus 743 ~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 822 (1065)
. ...| +.++
T Consensus 403 ~-----------------------------------------------~~~p-------~~~~----------------- 411 (554)
T TIGR03254 403 D-----------------------------------------------MYKP-------RHRL----------------- 411 (554)
T ss_pred c-----------------------------------------------cCCC-------CcEe-----------------
Confidence 1 0111 0111
Q ss_pred cceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCc
Q psy14416 823 LPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 902 (1065)
Q Consensus 823 ~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 902 (1065)
++|.+|+| |+++|+++ ||+++ ++++|+
T Consensus 412 ---------~~~~~gsm----------------------------G~~lpaai--Gaala---------~~~~vv----- 438 (554)
T TIGR03254 412 ---------DVGTWGVM----------------------------GIGMGYAI--AAAVE---------TGKPVV----- 438 (554)
T ss_pred ---------eCCCCCcC----------------------------CchHHHHH--HHHhc---------CCCcEE-----
Confidence 23335555 99999999 88886 357899
Q ss_pred ccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhH
Q psy14416 903 IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYAS 982 (1065)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~ 982 (1065)
+++|||+| +|+.|||+|+ +|+++|+++||+||+|++....
T Consensus 439 ----------------------------~i~GDGsf-~m~~~EL~Ta-----~r~~l~v~~vV~NN~~~~~~~~------ 478 (554)
T TIGR03254 439 ----------------------------ALEGDSAF-GFSGMEVETI-----CRYNLPVCVVIFNNGGIYRGDD------ 478 (554)
T ss_pred ----------------------------EEEcCchh-cccHHHHHHH-----HHcCCCEEEEEEeChhhhhhhh------
Confidence 99999999 9999999999 9999999999999998522110
Q ss_pred HhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhHh
Q psy14416 983 IVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLTN 1061 (1065)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 1061 (1065)
....+. ........+++||.++|++||+++++|++.+||+++++++++. ++|+||||.+++++..+..+..||+.
T Consensus 479 ~~~~~~---~~~~~~~~~~~df~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIev~id~~~~~~~~~~~~~~~ 553 (554)
T TIGR03254 479 VNVVGA---DPAPTVLVHGARYDKMMKAFGGVGYNVTTPDELKAALNEALAS-GKPTLINAVIDPSAGTESGHIGNLNP 553 (554)
T ss_pred hhhcCC---CCCccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEECCCcCCccccccccCC
Confidence 000110 1122333467999999999999999999999999999999976 89999999999999999877788863
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-77 Score=725.23 Aligned_cols=527 Identities=24% Similarity=0.365 Sum_probs=429.9
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
|+++++|++.|+++||+++||+||+++.+|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~ 80 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT 80 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence 57899999999999999999999999999999997788999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
||++|+.+++|||+|+|+++....+++.+|++||.++|+++|||+.++.+++++++.+++|++.|.++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++.+..... ........++.+.+++++++|++||||+|++
T Consensus 161 v~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~i~~~~~~l~~A~rPviv~ 203 (547)
T PRK08322 161 IAAEETDGKPLP-------------------------------------RSYSRRPYASPKAIERAAEAIQAAKNPLILI 203 (547)
T ss_pred hhhCcccccccc-------------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 987654321110 0011123466788999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.++.++++.+++.+|||++++||++|+++||.+|++||+++|. ..+.++++||+||.+|+++.++....|.
T Consensus 204 G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~- 282 (547)
T PRK08322 204 GAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN- 282 (547)
T ss_pred CCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCccccccccC-
Confidence 99998778899999999999999999999999999999999883 3467789999999999999876655543
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
+.++.++||||.|+..+++.+..++.+++|++.+|++|.+.++.. ..| ..+|...+++.... ...+.
T Consensus 283 -~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~-~~~----~~~~~~~~~~~~~~---~~~~~---- 349 (547)
T PRK08322 283 -PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLADQ-PHW----DFPRFLKIREAIEA---HLEEG---- 349 (547)
T ss_pred -CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcccc-ccc----cHHHHHHHHHHHHH---hhhhc----
Confidence 234578999999999999988899999999999999998877521 001 12344433322211 11100
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 739 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~ 739 (1065)
.. ....|+ + +..+++ .|.+.+|++.+++.|.|++..|..
T Consensus 350 ---------------~~-------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ii~~d~G~~~~~~~ 388 (547)
T PRK08322 350 ---------------AD-------DDRFPM-----K---PQRIVA-----------DLRKVMPDDDIVILDNGAYKIWFA 388 (547)
T ss_pred ---------------cc-------CCCCCc-----C---HHHHHH-----------HHHHHCCCCeEEEECCcHHHHHHH
Confidence 00 011245 6 667888 999999999999999998766644
Q ss_pred cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccce
Q psy14416 740 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 819 (1065)
Q Consensus 740 ~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 819 (1065)
+++.. ..| ..++.
T Consensus 389 ~~~~~-----------------------------------------------~~~-------~~~~~------------- 401 (547)
T PRK08322 389 RNYRA-----------------------------------------------YEP-------NTCLL------------- 401 (547)
T ss_pred Hhccc-----------------------------------------------CCC-------CCEEc-------------
Confidence 33211 000 00000
Q ss_pred eeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEc
Q psy14416 820 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 899 (1065)
Q Consensus 820 ~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 899 (1065)
++-+|+ ||+++|+++ ||+++. |+++|+
T Consensus 402 -------------~~~~g~----------------------------mG~~lpaai--Ga~la~--------p~~~vv-- 428 (547)
T PRK08322 402 -------------DNALAT----------------------------MGAGLPSAI--AAKLVH--------PDRKVL-- 428 (547)
T ss_pred -------------CCCccc----------------------------ccchhHHHH--HHHHhC--------CCCcEE--
Confidence 111334 499999998 999998 999999
Q ss_pred cCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhh
Q psy14416 900 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEAT 979 (1065)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~ 979 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||+| |+.+....
T Consensus 429 -------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~iiV~NN~~-~g~~~~~~ 470 (547)
T PRK08322 429 -------------------------------AVCGDGGF-MMNSQELETA-----VRLGLPLVVLILNDNA-YGMIRWKQ 470 (547)
T ss_pred -------------------------------EEEcchhH-hccHHHHHHH-----HHhCCCeEEEEEeCCC-cchHHHHH
Confidence 99999999 9999999999 9999999999999988 55333211
Q ss_pred HhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 980 YASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.. .. + .......+++||.++|++||+++++|++.+||+++++++++. ++|.||||.++++++.+
T Consensus 471 -~~-~~-~-----~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIev~v~~~~~~~ 534 (547)
T PRK08322 471 -EN-MG-F-----EDFGLDFGNPDFVKYAESYGAKGYRVESADDLLPTLEEALAQ-PGVHVIDCPVDYSENDR 534 (547)
T ss_pred -Hh-hc-C-----CcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCccCcc
Confidence 11 00 1 111223367999999999999999999999999999999986 89999999999887754
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-77 Score=725.88 Aligned_cols=538 Identities=22% Similarity=0.287 Sum_probs=435.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+++++++|++.|+++||++|||+||+++.++++++++++|++|.++||++|+|||+||+|+||+|+||++|+|||++|++
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l 83 (552)
T PRK08617 4 KKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLA 83 (552)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhH
Confidence 47899999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+|+++|+.+++|||+|+|+.+....+++.+|++||.++|+++|||++++++++++++.+++|++.|.+++||||||+||.
T Consensus 84 ~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 84 TGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred HHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++..... + ........++++.+++++++|++||||+|+
T Consensus 164 dv~~~~~~~~~~~--~----------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~ 207 (552)
T PRK08617 164 DVVDAPVTSKAIA--P----------------------------------LSKPKLGPASPEDINYLAELIKNAKLPVLL 207 (552)
T ss_pred hhhhccccccccc--c----------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 9988776432110 0 001112235677899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCc-ccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-NCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hp-l~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
+|.++.++++.+++++|+|++|+||++|+++||.+|++|| +++|. ..++++++||+||.+|+++.+.....|
T Consensus 208 ~G~g~~~~~a~~~l~~lae~~~~pV~tt~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~ 287 (552)
T PRK08617 208 LGMRASSPEVTAAIRRLLERTNLPVVETFQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYEPRNW 287 (552)
T ss_pred ECCCcchhhHHHHHHHHHHHhCCCEEeccccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCcccccccccc
Confidence 9999987788999999999999999999999999999998 57773 345678999999999998865544333
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
.. .++.++||||.|+..+++++..++.+.+|++.+|++|.+.++... ......+|.+.|++..+...+....
T Consensus 288 ~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--- 359 (552)
T PRK08617 288 NS--EGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDGLS---LSPQSLEILEELRAQLEELAERPAR--- 359 (552)
T ss_pred cc--CCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhhccc---CccchHHHHHHHHHHHHHhhhhhcc---
Confidence 32 235689999999999999999999999999999999988775211 0112345776666544332211100
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
....++ + +..+++ .|.+.+|++.+++.|+|++..|
T Consensus 360 --------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ii~~d~G~~~~~ 394 (552)
T PRK08617 360 --------------------------LEEGAV-----H---PLRIIR-----------ALQDIVTDDTTVTVDVGSHYIW 394 (552)
T ss_pred --------------------------cCCCCc-----C---HHHHHH-----------HHHHhcCCCcEEEeCCcHHHHH
Confidence 112345 6 667888 9999999999999999987666
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
...++.. ..| +.++.
T Consensus 395 ~~~~~~~-----------------------------------------------~~p-------~~~~~----------- 409 (552)
T PRK08617 395 MARYFRS-----------------------------------------------YEP-------RHLLF----------- 409 (552)
T ss_pred HHHhccc-----------------------------------------------cCC-------CeEEe-----------
Confidence 4432210 000 00000
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
++-+|+ ||+++|+++ ||+++. |+++|+
T Consensus 410 ---------------~~~~g~----------------------------mG~~lpaai--Ga~la~--------p~~~vv 436 (552)
T PRK08617 410 ---------------SNGMQT----------------------------LGVALPWAI--AAALVR--------PGKKVV 436 (552)
T ss_pred ---------------cCcccc----------------------------ccccccHHH--hhHhhc--------CCCcEE
Confidence 011333 499999998 999998 999999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||++ |+.+..
T Consensus 437 ---------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~~vV~NN~~-~~~~~~ 476 (552)
T PRK08617 437 ---------------------------------SVSGDGGF-LFSAMELETA-----VRLKLNIVHIIWNDGH-YNMVEF 476 (552)
T ss_pred ---------------------------------EEEechHH-hhhHHHHHHH-----HHhCCCeEEEEEECCc-cchHHH
Confidence 99999999 9999999999 9999999999999987 665432
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhh
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFS 1057 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 1057 (1065)
.. ...+ +. ...+ ..+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++++....+.-.
T Consensus 477 ~~-~~~~--~~----~~~~-~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~liev~~~~~~~~~~~~~~ 547 (552)
T PRK08617 477 QE-EMKY--GR----SSGV-DFGPVDFVKYAESFGAKGLRVTSPDELEPVLREALAT-DGPVVIDIPVDYSDNIKLMEQL 547 (552)
T ss_pred HH-Hhhc--CC----cccC-CCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCcEEEEEEecccccchhhhhc
Confidence 21 1111 11 1111 2257999999999999999999999999999999976 8999999999988886554433
Q ss_pred hh
Q psy14416 1058 WL 1059 (1065)
Q Consensus 1058 ~~ 1059 (1065)
|-
T Consensus 548 ~~ 549 (552)
T PRK08617 548 LP 549 (552)
T ss_pred cc
Confidence 43
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-77 Score=727.23 Aligned_cols=541 Identities=21% Similarity=0.307 Sum_probs=432.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||++|||+||+.+.++++++.+ .+|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 19 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N 98 (587)
T PRK06965 19 ADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTN 98 (587)
T ss_pred hhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 56799999999999999999999999999999999966 57999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||.++|+++|||+.++++++++.+.+++|++.|+++++|||||+|
T Consensus 99 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 178 (587)
T PRK06965 99 AVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDI 178 (587)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++..... +... ........++++.+++++++|++||||+
T Consensus 179 P~Dv~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPv 225 (587)
T PRK06965 179 PKDVSKTPCEYEYPK--SVEM-------------------------------RSYNPVTKGHSGQIRKAVSLLLSAKRPY 225 (587)
T ss_pred ChhhhhChhccccCc--cccc-------------------------------cCCCCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 999988775421100 0000 0001112346789999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
||+|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+..
T Consensus 226 il~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~ 305 (587)
T PRK06965 226 IYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGN 305 (587)
T ss_pred EEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCC
Confidence 99999999888899999999999999999999999999999999883 35568899999999999988754422
Q ss_pred CCcccc-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 577 RAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 577 ~~~~~~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
+. .+. ++.++||||.|+..+++.+..++.+++|+..+|++|.+.++.............|.+.++++.+...... .
T Consensus 306 ~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 382 (587)
T PRK06965 306 PA-HFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKY--D 382 (587)
T ss_pred hh-hcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhc--c
Confidence 21 232 3478999999999999988999999999999999999877521100000112456554443222110000 0
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....++ + +..+++ .|.+.+|+|++++.|+|++.
T Consensus 383 ----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ii~~d~G~~~ 415 (587)
T PRK06965 383 ----------------------------RESEII-----K---PQYVVE-----------KLWELTDGDAFVCSDVGQHQ 415 (587)
T ss_pred ----------------------------ccCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEeCCcHHH
Confidence 011245 6 677888 99999999999999999866
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| +.++
T Consensus 416 ~~~~~~~~~-----------------------------------------------~~p-------~~~~---------- 431 (587)
T PRK06965 416 MWAAQFYRF-----------------------------------------------NEP-------RRWI---------- 431 (587)
T ss_pred HHHHHhccc-----------------------------------------------CCC-------CeEE----------
Confidence 664433221 011 1111
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
++|-+|+| |+++|+++ ||+++. |+++
T Consensus 432 ----------------~~~~~gsm----------------------------G~glpaai--Ga~lA~--------p~r~ 457 (587)
T PRK06965 432 ----------------NSGGLGTM----------------------------GVGLPYAM--GIKMAH--------PDDD 457 (587)
T ss_pred ----------------cCCCcccc----------------------------cchHHHHH--HHHHhC--------CCCc
Confidence 23335555 99999998 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.++|+|+ +|+++|+++||+||++ |+.+
T Consensus 458 Vv---------------------------------~i~GDGsf-~m~~~eL~Ta-----~r~~lpviivV~NN~~-~~~i 497 (587)
T PRK06965 458 VV---------------------------------CITGEGSI-QMCIQELSTC-----LQYDTPVKIISLNNRY-LGMV 497 (587)
T ss_pred EE---------------------------------EEEcchhh-hcCHHHHHHH-----HHcCCCeEEEEEECCc-chHH
Confidence 99 99999999 9999999999 9999999999999987 4433
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
... ......+.... ....+.+||.++|++||+++++|+|.+||+++|+++++..++|+||||.++++++..
T Consensus 498 ~~~--q~~~~~~~~~~----~~~~~~~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV~i~~~~~~~ 568 (587)
T PRK06965 498 RQW--QEIEYSKRYSH----SYMDALPDFVKLAEAYGHVGMRIEKTSDVEPALREALRLKDRTVFLDFQTDPTENVW 568 (587)
T ss_pred HHH--HHHhcCCCccc----cCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeccccccC
Confidence 321 11111121111 111235799999999999999999999999999999974378999999999887643
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-77 Score=725.47 Aligned_cols=540 Identities=21% Similarity=0.296 Sum_probs=431.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||++|||+||+.+.+|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 35689999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+.+|++||..+++++|||++++.+++++.+.+++|++.|+++++|||||+|
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 168 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDI 168 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++.+.......+.. ........++.+.+++++++|++||||+
T Consensus 169 P~Dv~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~l~~a~~~L~~A~rPv 216 (595)
T PRK09107 169 PKDVQFATGTYTPPQKAPVH--------------------------------VSYQPKVKGDAEAITEAVELLANAKRPV 216 (595)
T ss_pred CCChhhcccccccccccccc--------------------------------cCCCCCCCCCHHHHHHHHHHHHhCCCcE
Confidence 99998766432110000000 0001123457789999999999999999
Q ss_pred EEEccCCCchh--HHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 504 VIIGKGAAYSQ--AETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 504 IlvG~g~~~~~--a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
||+|.++.+++ +.+++++|+|++|+||++|+++||++|++||+++|. ....++++||+||.+|+++++..+
T Consensus 217 il~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~ 296 (595)
T PRK09107 217 IYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRIT 296 (595)
T ss_pred EEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCcccc
Confidence 99999997664 789999999999999999999999999999999883 345678899999999999987655
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
..+. .+.++.++||||.|+..++++++.++.|++|+..+|++|.+.++.............|.+++.+.........
T Consensus 297 ~~~~-~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 373 (595)
T PRK09107 297 GRLD-AFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAY-- 373 (595)
T ss_pred Cchh-hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhc--
Confidence 4332 2456678999999999999999999999999999999999887532111111122456555443322110000
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC-CcEEEEECCCC
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGI 733 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP-~d~ilv~d~G~ 733 (1065)
. ....++ + +..+++ .|.+.++ +|.+++.|+|+
T Consensus 374 ~----------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~d~iv~~d~G~ 406 (595)
T PRK09107 374 T----------------------------PSDDVI-----M---PQYAIQ-----------RLYELTKGRDTYITTEVGQ 406 (595)
T ss_pred c----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCeEEEECCcH
Confidence 0 011245 6 677888 9999997 58999999987
Q ss_pred cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccc
Q psy14416 734 YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASI 813 (1065)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 813 (1065)
+..|...++.. ..| +.++
T Consensus 407 ~~~~~~~~~~~-----------------------------------------------~~p-------~~~~-------- 424 (595)
T PRK09107 407 HQMWAAQFFGF-----------------------------------------------EEP-------NRWM-------- 424 (595)
T ss_pred HHHHHHHhccc-----------------------------------------------CCC-------CeEE--------
Confidence 66664433221 011 0111
Q ss_pred ccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccccc
Q psy14416 814 VESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 893 (1065)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 893 (1065)
++|.+|+| |+++|+++ ||+++. |+
T Consensus 425 ------------------~~~~~gsm----------------------------G~glpaai--Ga~lA~--------p~ 448 (595)
T PRK09107 425 ------------------TSGGLGTM----------------------------GYGLPAAL--GVQIAH--------PD 448 (595)
T ss_pred ------------------cCCCchhh----------------------------hhhHHHHH--HHHHhC--------CC
Confidence 13335555 99999999 999998 99
Q ss_pred EEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccC
Q psy14416 894 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 973 (1065)
Q Consensus 894 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~ 973 (1065)
++|| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+
T Consensus 449 r~Vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpvi~vV~NN~~-y~ 488 (595)
T PRK09107 449 ALVI---------------------------------DIAGDASI-QMCIQEMSTA-----VQYNLPVKIFILNNQY-MG 488 (595)
T ss_pred CeEE---------------------------------EEEcCchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cH
Confidence 9999 99999999 9999999999 9999999999999987 44
Q ss_pred CCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 974 GFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
.+... ......+.... ....+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.+++++..
T Consensus 489 ~i~~~--q~~~~~~~~~~----~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~i~~~~~~ 559 (595)
T PRK09107 489 MVRQW--QQLLHGNRLSH----SYTEAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDV-DKPVIFDCRVANLENC 559 (595)
T ss_pred HHHHH--HHHHhCCcccc----ccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCcccc
Confidence 33221 11111111111 111235899999999999999999999999999999986 8999999999987643
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=721.41 Aligned_cols=531 Identities=22% Similarity=0.329 Sum_probs=432.1
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+++++++|++.|+++||++|||+||+.+.++++++.+++|++|.|+||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 7 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~ 86 (561)
T PRK06048 7 KMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNLV 86 (561)
T ss_pred cccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHH
Confidence 57899999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+..+.+.+++|++||..+|+++|||++++++++++++.+++|++.|.+++||||||+||.
T Consensus 87 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 87 TGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred HHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++... + .+... ....+...++.+.+++++++|++||||+|+
T Consensus 167 dv~~~~~~~~~-~-~~~~~-------------------------------~~~~~~~~~~~~~i~~~a~~L~~AkrPvil 213 (561)
T PRK06048 167 DVTTAEIDFDY-P-DKVEL-------------------------------RGYKPTYKGNPQQIKRAAELIMKAERPIIY 213 (561)
T ss_pred hhhhccccccc-C-ccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 99877654210 0 00000 000111235778999999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..+.
T Consensus 214 ~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~ 293 (561)
T PRK06048 214 AGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLA 293 (561)
T ss_pred ECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChh
Confidence 999999888899999999999999999999999999999999983 3466889999999999999876554332
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.+.++.++||||.|+..+++++..++.+++|+.++|++|.+.+.. ..+..|.+.++...+...... .
T Consensus 294 -~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~--~--- 360 (561)
T PRK06048 294 -SFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQY-------CDRKEWLDKINQWKKEYPLKY--K--- 360 (561)
T ss_pred -hcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHhChhhc--c---
Confidence 245667899999999999999999999999999999999987752 123457666554332211100 0
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
....++ + +..+++ .|.+.+| +.+++.|.|++..|.
T Consensus 361 -------------------------~~~~~l-----~---~~~~~~-----------~l~~~~p-~~iiv~d~g~~~~~~ 395 (561)
T PRK06048 361 -------------------------EREDVI-----K---PQYVIE-----------QIYELCP-DAIIVTEVGQHQMWA 395 (561)
T ss_pred -------------------------CCCCCc-----C---HHHHHH-----------HHHhhCC-CcEEEEcCcHHHHHH
Confidence 012245 6 667888 9999998 789999998765554
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++.. ..| ..++
T Consensus 396 ~~~~~~-----------------------------------------------~~~-------~~~~------------- 408 (561)
T PRK06048 396 AQYFKY-----------------------------------------------KYP-------RTFI------------- 408 (561)
T ss_pred HHhccc-----------------------------------------------CCC-------CeEE-------------
Confidence 322211 000 0011
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
+++-+|+| |+++|+++ ||+++. |+++|+
T Consensus 409 -------------~~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~Vv- 436 (561)
T PRK06048 409 -------------TSGGLGTM----------------------------GYGFPAAI--GAKVGK--------PDKTVI- 436 (561)
T ss_pred -------------eCCCcccc----------------------------ccHHHHHH--HHHHhC--------CCCcEE-
Confidence 12334555 99999888 999998 999999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+...
T Consensus 437 --------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~i~~vV~NN~~-y~~i~~~ 477 (561)
T PRK06048 437 --------------------------------DIAGDGSF-QMNSQELATA-----VQNDIPVIVAILNNGY-LGMVRQW 477 (561)
T ss_pred --------------------------------EEEeCchh-hccHHHHHHH-----HHcCCCeEEEEEECCc-cHHHHHH
Confidence 99999999 9999999999 9999999999999987 4432221
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
......+.. ......+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.++++++..
T Consensus 478 --~~~~~~~~~----~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~~-~~p~liev~~~~~~~~~ 544 (561)
T PRK06048 478 --QELFYDKRY----SHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVAS-DRPVVIDFIVECEENVS 544 (561)
T ss_pred --HHHHcCCcc----cccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCccccC
Confidence 111111111 11222367999999999999999999999999999999986 89999999999887653
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=727.44 Aligned_cols=545 Identities=21% Similarity=0.297 Sum_probs=435.0
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
.+++++++|++.|+++||+++||+||+.+.+|++++.++ +|++|.|+||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 29 ~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 108 (612)
T PRK07789 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATN 108 (612)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357899999999999999999999999999999999654 7999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+++|++||..+|+++|||+.++++++++++.+++|++.|+++|+|||||+|
T Consensus 109 ~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~i 188 (612)
T PRK07789 109 LVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDI 188 (612)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++..... ...+ ........++.+.+++++++|.+||||+
T Consensus 189 P~Dv~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~p~~~~i~~~~~~L~~AkrPl 235 (612)
T PRK07789 189 PKDALQAQTTFSWPP--RMDL-------------------------------PGYRPVTKPHGKQIREAAKLIAAARRPV 235 (612)
T ss_pred ccchhhcccccccCc--cccc-------------------------------cCCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999988765321000 0000 0001122466788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
||+|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+..
T Consensus 236 Il~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~ 315 (612)
T PRK07789 236 LYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVTGK 315 (612)
T ss_pred EEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCccccCC
Confidence 99999998888899999999999999999999999999999999873 34578889999999999998754433
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+ ..+.++.++||||.|+..+++++..++.|++|+..+|++|.+.++.............|.+.+++.+........+
T Consensus 316 ~-~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-- 392 (612)
T PRK07789 316 L-DSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDE-- 392 (612)
T ss_pred h-hhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCcccccc--
Confidence 2 2355667899999999999999999999999999999999988752110000012245665554432221111000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|++++++.|.|++..
T Consensus 393 ---------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~~~ 426 (612)
T PRK07789 393 ---------------------------PSDGSL-----A---PQYVIE-----------RLGEIAGPDAIYVAGVGQHQM 426 (612)
T ss_pred ---------------------------ccCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHH
Confidence 112245 6 677888 999999999999999998666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|...++.. ..| +.+
T Consensus 427 ~~~~~~~~-----------------------------------------------~~p-------~~~------------ 440 (612)
T PRK07789 427 WAAQFIDY-----------------------------------------------EKP-------RTW------------ 440 (612)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeE------------
Confidence 64433221 001 011
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
-|+|-+|+| |+++|+++ ||+++. |+++|
T Consensus 441 --------------~~~~~~G~m----------------------------G~glpaai--Ga~la~--------p~~~V 468 (612)
T PRK07789 441 --------------LNSGGLGTM----------------------------GYAVPAAM--GAKVGR--------PDKEV 468 (612)
T ss_pred --------------EcCCCcccc----------------------------cchhhhHH--hhhccC--------CCCcE
Confidence 133445666 99999998 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 469 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~lpv~ivV~NN~~-~g~i~ 508 (612)
T PRK07789 469 W---------------------------------AIDGDGCF-QMTNQELATC-----AIEGIPIKVALINNGN-LGMVR 508 (612)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHcCCCeEEEEEECCc-hHHHH
Confidence 9 99999999 9999999999 9999999999999988 44332
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
... .....+............+.+||.++|++||++|++|++.+||+++|+++++..++|+||||.++++++.
T Consensus 509 ~~q--~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~ 581 (612)
T PRK07789 509 QWQ--TLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAINDRPVVIDFVVGKDAMV 581 (612)
T ss_pred HHH--HHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCcccc
Confidence 211 1111111111000111224589999999999999999999999999999997437999999999987653
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=722.12 Aligned_cols=536 Identities=21% Similarity=0.295 Sum_probs=435.2
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
++.++++++|++.|+++||++|||+||+++.+|++++.+++|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 13 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N 92 (571)
T PRK07710 13 EKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATN 92 (571)
T ss_pred cccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 34578999999999999999999999999999999998789999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|||+++....+++++|++||..+|+++|||++++.+++++++.+++|++.|.++|||||||+|
T Consensus 93 ~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 172 (571)
T PRK07710 93 VVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDI 172 (571)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++..... +.. + ........++...+++++++|++||||+
T Consensus 173 P~Dv~~~~~~~~~~~--~~~------~-------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 219 (571)
T PRK07710 173 PKDMVVEEGEFCYDV--QMD------L-------------------------PGYQPNYEPNLLQIRKLVQAVSVAKKPV 219 (571)
T ss_pred ChhHhhccccccccc--ccc------c-------------------------cCCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999987765321100 000 0 0001112357788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.+.++.++|++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+.
T Consensus 220 Il~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~- 298 (571)
T PRK07710 220 ILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVTG- 298 (571)
T ss_pred EEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccC-
Confidence 99999998777889999999999999999999999999999999883 3567788999999999999875443
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+...+.++.++||||.|+..+++.+..++.+++|+..+|++|.+.++.. .....|.+.++...++..... .
T Consensus 299 ~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~- 369 (571)
T PRK07710 299 NLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGKK------ENHHEWLSLLKNWKEKYPLSY--K- 369 (571)
T ss_pred chhhcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhhcc------CCcHHHHHHHHHHHHhChhhh--c-
Confidence 3223556678999999999999999999999999999999998876421 123567766655433221110 0
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|++++++.|.|++..
T Consensus 370 ---------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~~d~g~~~~ 403 (571)
T PRK07710 370 ---------------------------RNSESI-----K---PQKAIE-----------MLYEITKGEAIVTTDVGQHQM 403 (571)
T ss_pred ---------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHH
Confidence 011245 5 667888 999999999999999987655
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|...++.. ..| +.++
T Consensus 404 ~~~~~~~~-----------------------------------------------~~~-------~~~~----------- 418 (571)
T PRK07710 404 WAAQYYPF-----------------------------------------------KTP-------DKWV----------- 418 (571)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeEE-----------
Confidence 53321110 001 0011
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|-+|+| |+++|+++ ||+++. |+++|
T Consensus 419 ---------------~~~~~g~m----------------------------G~glpaAi--Gaala~--------p~~~v 445 (571)
T PRK07710 419 ---------------TSGGLGTM----------------------------GFGLPAAI--GAQLAK--------PDETV 445 (571)
T ss_pred ---------------cCCCcccc----------------------------cchHHHHH--HHHHhC--------CCCcE
Confidence 23345666 99999888 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 446 v---------------------------------~i~GDGsf-~m~~~eL~ta-----~r~~lpi~ivV~NN~~-~~~i~ 485 (571)
T PRK07710 446 V---------------------------------AIVGDGGF-QMTLQELSVI-----KELSLPVKVVILNNEA-LGMVR 485 (571)
T ss_pred E---------------------------------EEEcchHH-hhhHHHHHHH-----HHhCCCeEEEEEECch-HHHHH
Confidence 9 99999999 9999999999 9999999999999988 44333
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
... ....... .......+++||.++|++||++++++++.+||+++++++++. ++|+||||.++++++..+
T Consensus 486 ~~~--~~~~~~~----~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lieV~vd~~~~~~~ 555 (571)
T PRK07710 486 QWQ--EEFYNQR----YSHSLLSCQPDFVKLAEAYGIKGVRIDDELEAKEQLQHAIEL-QEPVVIDCRVLQSEKVMP 555 (571)
T ss_pred HHH--HHHhCCc----ceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCcccccc
Confidence 221 1111111 011222356999999999999999999999999999999986 899999999998876543
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-76 Score=720.84 Aligned_cols=533 Identities=24% Similarity=0.335 Sum_probs=435.6
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
+..++++++|++.|+++||+++||+||+++.+|++++.++ +|++|.++||++|+|||+||+|+||+|+||++|+|||++
T Consensus 10 ~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 89 (564)
T PRK08155 10 RKRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGAT 89 (564)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHH
Confidence 3456899999999999999999999999999999999764 799999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++||++|+.+++|||+|+|+++....+.+++|++||.++|+++|||+.++++++++++.+++|++.|.++|+|||||+
T Consensus 90 N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~ 169 (564)
T PRK08155 90 NLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWID 169 (564)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++....+ .. ........++++.+++++++|++||||
T Consensus 170 iP~Dv~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrP 214 (564)
T PRK08155 170 IPKDVQTAVIELEALP---AP--------------------------------AEKDAAPAFDEESIRDAAAMINAAKRP 214 (564)
T ss_pred cCHhHHhhhcccccCC---Cc--------------------------------cccCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999988776532111 00 000112345677899999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|++|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ..++.+++||+||.+|++++++.+.
T Consensus 215 vIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~ 294 (564)
T PRK08155 215 VLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIG 294 (564)
T ss_pred EEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC
Confidence 999999998878889999999999999999999999999999999873 3556789999999999999887654
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
.+. .+.++.++||||.|+..+++.+..++.+.+|+.++|++|.+.+.. ..+..|.++++...+......+
T Consensus 295 ~~~-~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~-- 364 (564)
T PRK08155 295 KTE-QFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEA-------QPRAEWHQLVADLQREFPCPIP-- 364 (564)
T ss_pred CHh-hcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhcc-------cchHHHHHHHHHHHHhChhhcc--
Confidence 332 245667899999999999999999999999999999999887752 1235677665543332111110
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....|+ + +..+++ .|.+.+|++.+++.|+|++.
T Consensus 365 ----------------------------~~~~~l-----~---~~~v~~-----------~l~~~l~~~~iv~~D~G~~~ 397 (564)
T PRK08155 365 ----------------------------KADDPL-----S---HYGLIN-----------AVAACVDDNAIITTDVGQHQ 397 (564)
T ss_pred ----------------------------cCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEECCchHH
Confidence 011246 6 777888 99999999999999998755
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|...++.. ..| ..++
T Consensus 398 ~~~~~~~~~-----------------------------------------------~~~-------~~~~---------- 413 (564)
T PRK08155 398 MWTAQAYPL-----------------------------------------------NRP-------RQWL---------- 413 (564)
T ss_pred HHHHHhccc-----------------------------------------------cCC-------CeEE----------
Confidence 553322110 000 0001
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
++|-+|+| |+++++++ ||+++. |+++
T Consensus 414 ----------------~~~~~g~m----------------------------G~~lpaai--Ga~la~--------~~~~ 439 (564)
T PRK08155 414 ----------------TSGGLGTM----------------------------GFGLPAAI--GAALAN--------PERK 439 (564)
T ss_pred ----------------eCCCcccc----------------------------cchhHHHH--HHHHhC--------CCCc
Confidence 12334445 99999888 999998 8999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.++++|+ +++++|+++||+||+| |+.+
T Consensus 440 vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~lpvi~vV~NN~~-~g~~ 479 (564)
T PRK08155 440 VL---------------------------------CFSGDGSL-MMNIQEMATA-----AENQLDVKIILMNNEA-LGLV 479 (564)
T ss_pred EE---------------------------------EEEccchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cccc
Confidence 99 99999999 9999999999 9999999999999987 5544
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.... ...+ ..... .....+++||.++|++||+++.++++.+||+++|+++++. ++|+||||.++++++..+
T Consensus 480 ~~~q-~~~~-~~~~~----~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~~~~~~~~~~ 550 (564)
T PRK08155 480 HQQQ-SLFY-GQRVF----AATYPGKINFMQIAAGFGLETCDLNNEADPQAALQEAINR-PGPALIHVRIDAEEKVYP 550 (564)
T ss_pred HHHH-HHhc-CCCee----eccCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcccCC
Confidence 4321 1111 11111 1112356999999999999999999999999999999986 899999999998876543
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-76 Score=718.93 Aligned_cols=531 Identities=22% Similarity=0.322 Sum_probs=432.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||+++||+||+.+.+|++++.+ .+|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 35689999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+.+|++||.++|+++|||+.++++++++++.+++|++.|+++|||||||+|
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 167 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDL 167 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++....+ .. +. ........+++..+++++++|++||||+
T Consensus 168 P~Dv~~~~~~~~~~~---~~-----~~-------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 214 (566)
T PRK07282 168 PKDVSALETDFIYDP---EV-----NL-------------------------PSYQPTLEPNDMQIKKILKQLSKAKKPV 214 (566)
T ss_pred Chhhhhhhhcccccc---cc-----cc-------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCcE
Confidence 999998776421100 00 00 0001122456788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+..
T Consensus 215 il~G~g~~~~~a~~~l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~ 294 (566)
T PRK07282 215 ILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGN 294 (566)
T ss_pred EEECCCcCcccHHHHHHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCC
Confidence 99999998888899999999999999999999999999999999872 45678899999999999998765433
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++++..++.+++|+..+|++|.+.++.+ .....|.+++.+........ .
T Consensus 295 ~~-~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~---~- 363 (566)
T PRK07282 295 PK-TFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPTVH------NNTEKWIEKVTKDKNRVRSY---D- 363 (566)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhccc------CChHHHHHHHHHHHHhchhc---c-
Confidence 32 3456678999999999999999899999999999999999877521 12356766654433221100 0
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|++.+|++++++.|+|++..
T Consensus 364 ---------------------------~~~~~l-----~---~~~~~~-----------~l~~~~~~~~ivv~d~G~~~~ 397 (566)
T PRK07282 364 ---------------------------KKERVV-----Q---PQAVIE-----------RIGELTNGDAIVVTDVGQHQM 397 (566)
T ss_pred ---------------------------CcCCCc-----C---HHHHHH-----------HHHhhcCCCeEEEECCcHHHH
Confidence 011245 6 777888 999999999999999987665
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|...++.. ..| ..++
T Consensus 398 ~~~~~~~~-----------------------------------------------~~~-------~~~~----------- 412 (566)
T PRK07282 398 WAAQYYPY-----------------------------------------------QNE-------RQLV----------- 412 (566)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CcEe-----------
Confidence 54322210 001 0111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++|-+|+| |+++|+++ ||+++. |+++|
T Consensus 413 ---------------~~~~~g~m----------------------------G~glpaai--Ga~lA~--------p~~~V 439 (566)
T PRK07282 413 ---------------TSGGLGTM----------------------------GFGIPAAI--GAKIAN--------PDKEV 439 (566)
T ss_pred ---------------cCCccccc----------------------------cchhhHhh--eeheec--------CCCcE
Confidence 23335555 99999999 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 440 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~i~~vV~NN~~-y~~i~ 479 (566)
T PRK07282 440 I---------------------------------LFVGDGGF-QMTNQELAIL-----NIYKVPIKVVMLNNHS-LGMVR 479 (566)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEeCCC-chHHH
Confidence 9 99999999 9999999999 9999999999999988 44333
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
... .....+.. ......+++||.++|++||+++++++|.+||+++++ ++.. ++|+||||.++++++.
T Consensus 480 ~~q--~~~~~~~~----~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~-~~~~-~~p~lIeV~v~~~~~~ 546 (566)
T PRK07282 480 QWQ--ESFYEGRT----SESVFDTLPDFQLMAQAYGIKHYKFDNPETLAQDLE-VITE-DVPMLIEVDISRKEHV 546 (566)
T ss_pred HHH--HHHhCCCc----ccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHH-HhcC-CCCEEEEEEeCCcccc
Confidence 221 11111111 112223568999999999999999999999999997 4555 8999999999987764
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-76 Score=720.47 Aligned_cols=538 Identities=21% Similarity=0.341 Sum_probs=432.7
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
++++++|++.|+++||++|||+||+.+.+|++++.+ .+|++|.|+||++|+|||+||+|+||+|+||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 368999999999999999999999999999999953 3699999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++||++|+.+++|||+|+|+.+....+++.+|++||..+|+++|||+.++++++++++.+++|++.|+++++|||||+
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 161 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVID 161 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++.......+.. + ...+....++++.+++++++|++||||
T Consensus 162 iP~Dv~~~~~~~~~~~~~~~~-------~------------------------~~~~~~~~~~~~~~~~~~~~L~~A~rP 210 (572)
T PRK06456 162 IPRDIFYEKMEEIKWPEKPLV-------K------------------------GYRDFPTRIDRLALKKAAEILINAERP 210 (572)
T ss_pred cChhHhhcccccccccccccc-------c------------------------CCCCCCCCCCHHHHHHHHHHHHhCCCc
Confidence 999998877643111000000 0 001112336778899999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|++|.++.++++.+++++|+|++|+||++|+++||++|++||+++|. ....++++||+||.+|+++.+..+.
T Consensus 211 vil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~ 290 (572)
T PRK06456 211 IILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFT 290 (572)
T ss_pred EEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhhcc
Confidence 999999998888899999999999999999999999999999999873 3556788999999999999876554
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
.+.....++.++||||.|+..+++++..+..+++|+..+|++|.+.+..... ......|.+.++...+...+...+
T Consensus 291 ~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 366 (572)
T PRK06456 291 SYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITELGQ---KRDRSAWLKRVKEYKEYYSQFYYT- 366 (572)
T ss_pred ccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhhhccc---ccccHHHHHHHHHHHHhchhhccc-
Confidence 4432122356899999999999999999999999999999999988752110 012245766655443322111100
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....++ + +..+++ .|.+.+|++++|+.|+|++.
T Consensus 367 ----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ii~~d~g~~~ 399 (572)
T PRK06456 367 ----------------------------EENGKL-----K---PWKIMK-----------TIRQALPRDAIVTTGVGQHQ 399 (572)
T ss_pred ----------------------------ccCCCc-----C---HHHHHH-----------HHHHhCCCCEEEEECCcHHH
Confidence 011245 6 777888 99999999999999999876
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| ..++
T Consensus 400 ~~~~~~~~~-----------------------------------------------~~p-------~~~~---------- 415 (572)
T PRK06456 400 MWAEVFWEV-----------------------------------------------LEP-------RTFL---------- 415 (572)
T ss_pred HHHHHhcCc-----------------------------------------------CCC-------CcEE----------
Confidence 665433221 000 0000
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+++-+|+| |+++++++ ||+++. |+++
T Consensus 416 ----------------~~~~~g~m----------------------------G~glpaAi--Ga~la~--------p~~~ 441 (572)
T PRK06456 416 ----------------TSSGMGTM----------------------------GFGLPAAM--GAKLAR--------PDKV 441 (572)
T ss_pred ----------------cCCCcccc----------------------------cchhHHHH--HHHHhC--------CCCe
Confidence 12224555 99999998 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+
T Consensus 442 vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~i~ivV~NN~~-yg~i 481 (572)
T PRK06456 442 VV---------------------------------DLDGDGSF-LMTGTNLATA-----VDEHIPVISVIFDNRT-LGLV 481 (572)
T ss_pred EE---------------------------------EEEccchH-hcchHHHHHH-----HHhCCCeEEEEEECCc-hHHH
Confidence 99 99999999 9999999999 9999999999999988 4433
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
.... .....+. .......+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.+++++..
T Consensus 482 ~~~q--~~~~~~~----~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIev~v~~~~~~ 550 (572)
T PRK06456 482 RQVQ--DLFFGKR----IVGVDYGPSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAIKE-DIPAVIRVPVDKEELA 550 (572)
T ss_pred HHHH--HHhhCCC----cccccCCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCccccc
Confidence 2211 1111111 111222356999999999999999999999999999999976 8999999999987644
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-76 Score=716.53 Aligned_cols=530 Identities=23% Similarity=0.319 Sum_probs=433.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
.++++++|++.|+++||++|||+||+.+.++++++.+++|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~ 93 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLV 93 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 57899999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+....+.+.+|++||..+++++|||++++.+++++.+.+++|++.|.++|+|||||+||.
T Consensus 94 ~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 94 TGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred HHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++.. .. .+... ........++++.+++++++|++||||+|+
T Consensus 174 Dv~~~~~~~~-~~-~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl 220 (570)
T PRK06725 174 DVQNEKVTSF-YN-EVVEI-------------------------------PGYKPEPRPDSMKLREVAKAISKAKRPLLY 220 (570)
T ss_pred chhhcccccc-cC-ccccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 9987766421 10 00000 000112346788899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++.++++.++|.+|||++++||++|+++||.+|++||+++|. ...+++++|||||.+|+++++..+..+.
T Consensus 221 ~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~ 300 (570)
T PRK06725 221 IGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLE 300 (570)
T ss_pred ECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCccc
Confidence 999998888899999999999999999999999999999999873 3567889999999999999876554332
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.+.++.++||||.|+..+++++..++.+.+|+..+|++|.+.++. .....|.++++...+.......
T Consensus 301 -~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~----- 367 (570)
T PRK06725 301 -LFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIH-------TQTDEWLQKVKTWKEEYPLSYK----- 367 (570)
T ss_pred -ccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHhChhhhc-----
Confidence 245667899999999999999999999999999999999887752 1234576655543332111100
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
....++ + +..+++ .|.+.+|+|.+++.|+|++..|.
T Consensus 368 -------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~d~iiv~d~g~~~~~~ 403 (570)
T PRK06725 368 -------------------------QKESEL-----K---PQHVIN-----------LVSELTNGEAIVTTEVGQHQMWA 403 (570)
T ss_pred -------------------------ccCCCc-----C---HHHHHH-----------HHHhhCCCCcEEEeCCcHHHHHH
Confidence 011245 6 677888 99999999999999998766554
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++.. ..| +.++
T Consensus 404 ~~~~~~-----------------------------------------------~~p-------~~~~------------- 416 (570)
T PRK06725 404 AHFYKA-----------------------------------------------KNP-------RTFL------------- 416 (570)
T ss_pred HHhccc-----------------------------------------------cCC-------CeEE-------------
Confidence 432211 001 0011
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
.+|-+|+| |+++|+++ ||+++. |+++|+
T Consensus 417 -------------~~~~~gsm----------------------------G~~lp~ai--Ga~lA~--------p~~~vv- 444 (570)
T PRK06725 417 -------------TSGGLGTM----------------------------GFGFPAAI--GAQLAK--------EEELVI- 444 (570)
T ss_pred -------------ccCCcccc----------------------------cchhhHHH--hhHhhc--------CCCeEE-
Confidence 12224444 99999998 999998 999999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||++ |+.....
T Consensus 445 --------------------------------~i~GDG~f-~~~~~el~Ta-----~~~~lpi~~vV~NN~~-~~~~~~~ 485 (570)
T PRK06725 445 --------------------------------CIAGDASF-QMNIQELQTI-----AENNIPVKVFIINNKF-LGMVRQW 485 (570)
T ss_pred --------------------------------EEEecchh-hccHHHHHHH-----HHhCCCeEEEEEECCc-cHHHHHH
Confidence 99999999 9999999999 9999999999999977 4433221
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
......+. ......+++||.++|++||+++++|+|.+||+++++++++. ++|+||||.+++++..
T Consensus 486 --q~~~~~~~-----~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~~p~liev~id~~~~~ 550 (570)
T PRK06725 486 --QEMFYENR-----LSESKIGSPDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAH-EGPVVVDFCVEEGENV 550 (570)
T ss_pred --HHHhcCCc-----cccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCcccc
Confidence 11111111 11122346999999999999999999999999999999987 8999999999987754
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-76 Score=717.85 Aligned_cols=536 Identities=24% Similarity=0.327 Sum_probs=432.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
.+++++++|++.|+++||++|||+||+++.+|++++.++ +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 85 (557)
T PRK08199 6 RARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATN 85 (557)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHH
Confidence 457899999999999999999999999999999999765 5999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+++.++.+++.+|++||..+|+++|||+.++.+++++++.++||++.|.++|+|||||+|
T Consensus 86 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~i 165 (557)
T PRK08199 86 ASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLAL 165 (557)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++.+..... ........++++.+++++++|++||||+
T Consensus 166 P~dl~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 208 (557)
T PRK08199 166 PEDVLSETAEVPDAP-------------------------------------PYRRVAAAPGAADLARLAELLARAERPL 208 (557)
T ss_pred CHhHhhCcccccccC-------------------------------------CcCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 999987765322110 0011223467788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+.+++||+||.+|+++++..+..
T Consensus 209 i~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~ 288 (557)
T PRK08199 209 VILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVTTQG 288 (557)
T ss_pred EEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCccccccc
Confidence 99999998888889999999999999999999999999999999872 35567889999999999998765543
Q ss_pred CCcc--ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 577 RAPR--FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 577 ~~~~--~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
+... ..++.++||||.|+..+++.+..++.|++|+..+|++|.+.++. ....|...++..++.+.+..+.
T Consensus 289 ~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 360 (557)
T PRK08199 289 YTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPP--------ASPAWAEWTAAAHADYLAWSAP 360 (557)
T ss_pred cccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccc--------cchhHHHHHHHHHHHHHhhccc
Confidence 3211 12456899999999999999999999999999999999875431 1245665544433332222111
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
. ....++ + +..+++ .|.+.+|++.+++.|+|++
T Consensus 361 ~----------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~ii~~d~g~~ 393 (557)
T PRK08199 361 L----------------------------PGPGAV-----Q---LGEVMA-----------WLRERLPADAIITNGAGNY 393 (557)
T ss_pred c----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEECChHH
Confidence 1 011245 6 667888 9999999999999999876
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|..+++.. ..| +.++
T Consensus 394 ~~~~~~~~~~-----------------------------------------------~~~-------~~~~--------- 410 (557)
T PRK08199 394 ATWLHRFFRF-----------------------------------------------RRY-------RTQL--------- 410 (557)
T ss_pred HHHHHHhcCc-----------------------------------------------CCC-------CeEE---------
Confidence 6664432211 000 0000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
. + .+ +++|+++|+++ |++++. |++
T Consensus 411 ----------------~-~-~~----------------------------g~mG~glpaai--Ga~la~--------p~~ 434 (557)
T PRK08199 411 ----------------A-P-TS----------------------------GSMGYGLPAAI--AAKLLF--------PER 434 (557)
T ss_pred ----------------C-C-CC----------------------------ccccchHHHHH--HHHHhC--------CCC
Confidence 0 0 02 34499999988 999998 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++++|+ +++++|+++||+||++ |+.
T Consensus 435 ~vv---------------------------------~i~GDGsf-~~~~~el~ta-----~~~~l~i~~vv~nN~~-~~~ 474 (557)
T PRK08199 435 TVV---------------------------------AFAGDGCF-LMNGQELATA-----VQYGLPIIVIVVNNGM-YGT 474 (557)
T ss_pred cEE---------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-chH
Confidence 999 99999999 9999999999 9999999999999976 554
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcc
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQ 1054 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 1054 (1065)
+.... .....+... ....+.+||.++|++||+.+++|++.+||+++++++++. ++|+||||.+++++.....
T Consensus 475 ~~~~~--~~~~~~~~~-----~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~li~v~~~~~~~~~~~ 546 (557)
T PRK08199 475 IRMHQ--EREYPGRVS-----GTDLTNPDFAALARAYGGHGETVERTEDFAPAFERALAS-GKPALIEIRIDPEAITPTA 546 (557)
T ss_pred HHHHH--HHhcCCccc-----cccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCHHHcCCCC
Confidence 43321 111112111 112245899999999999999999999999999999976 8999999999987654333
Q ss_pred hhhhh
Q psy14416 1055 NFSWL 1059 (1065)
Q Consensus 1055 ~~~~~ 1059 (1065)
.+.++
T Consensus 547 ~~~~~ 551 (557)
T PRK08199 547 TLSQI 551 (557)
T ss_pred CHHHH
Confidence 34443
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-76 Score=718.60 Aligned_cols=544 Identities=35% Similarity=0.614 Sum_probs=434.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
..++++++|++.|+++||++|||+||..+.++.+++++++|++|.|+||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 8 QLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 35689999999999999999999999999999988887889999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCC--CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~--~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
++||++|+.+++|||+|+|+.+.+. .+++.+|++||.++|+++|||++++.+++++++.+++|++.|+++|||||||+
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLD 167 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEE
Confidence 9999999999999999999998764 35788999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++..... .+. |+ .........++++.+++++++|++||||
T Consensus 168 iP~Dv~~~~~~~~~~~-~~~-------~~-----------------------~~~~~~~~~~~~~~l~~~~~~L~~AkrP 216 (569)
T PRK09259 168 LPAKVLAQTMDADEAL-TSL-------VK-----------------------VVDPAPAQLPAPEAVDRALDLLKKAKRP 216 (569)
T ss_pred eCHHHhhCcccccccc-ccc-------cc-----------------------ccCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999998876532110 000 00 0001122346788999999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCcccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFK 582 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~ 582 (1065)
+|++|.++.++++.+++.+|||++++||++|+++||++|++||+++|...+.++++||+||.+|+++++....++...+.
T Consensus 217 vIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~ 296 (569)
T PRK09259 217 LIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWG 296 (569)
T ss_pred EEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccC
Confidence 99999999888889999999999999999999999999999999999888888999999999999998765544433355
Q ss_pred CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhhcc
Q psy14416 583 SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIVNN 662 (1065)
Q Consensus 583 ~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1065)
++.++||||.|+..++..++.+..+.+|+..+|++|.+.++.. .......|.++++...........+..
T Consensus 297 ~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~------ 366 (569)
T PRK09259 297 ADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQN----TFKAPAEWLDALAERKEKNAAKMAEKL------ 366 (569)
T ss_pred CCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhhhc----cccchHHHHHHHHHHHHhChhhhhhhh------
Confidence 6678999999999999999999999999999999999987521 012235677666544333222211110
Q ss_pred CCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC--CcEEEEECCCCcCccccc
Q psy14416 663 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP--VILVIVNNNGIYGGFDET 740 (1065)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP--~d~ilv~d~G~~~~~~~~ 740 (1065)
. ....|+ + +..+++ .|++.++ +|.+++.|+|++..|...
T Consensus 367 ------------~--------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~d~iv~~~~~~~~~~~~~ 407 (569)
T PRK09259 367 ------------S--------TDTQPM-----N---FYNALG-----------AIRDVLKENPDIYLVNEGANTLDLARN 407 (569)
T ss_pred ------------c--------CCCCCc-----C---HHHHHH-----------HHHHHhCCCCCEEEEeCchHHHHHHHH
Confidence 0 012346 6 677888 9999994 588888887654333221
Q ss_pred chhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccccee
Q psy14416 741 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 820 (1065)
Q Consensus 741 ~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 820 (1065)
++. ...| +.++
T Consensus 408 ~~~-----------------------------------------------~~~p-------~~~~--------------- 418 (569)
T PRK09259 408 IID-----------------------------------------------MYKP-------RHRL--------------- 418 (569)
T ss_pred hcc-----------------------------------------------cCCC-------CceE---------------
Confidence 111 0011 0000
Q ss_pred eccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEcc
Q psy14416 821 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 900 (1065)
Q Consensus 821 ~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 900 (1065)
++|.+|+| |+++|+++ ||+++ ++++||
T Consensus 419 -----------~~~~~gsm----------------------------G~glpaai--Ga~la---------~~~~vv--- 445 (569)
T PRK09259 419 -----------DCGTWGVM----------------------------GIGMGYAI--AAAVE---------TGKPVV--- 445 (569)
T ss_pred -----------eCCCCccc----------------------------cccHHHHH--HHHhc---------CCCcEE---
Confidence 12334555 99999998 88887 357799
Q ss_pred CcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhH
Q psy14416 901 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATY 980 (1065)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~ 980 (1065)
+++|||+| +|+.+|++|+ +|+++|+++||+||+|++... .
T Consensus 446 ------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpi~~vV~NN~~~~~~~----~ 485 (569)
T PRK09259 446 ------------------------------AIEGDSAF-GFSGMEVETI-----CRYNLPVTVVIFNNGGIYRGD----D 485 (569)
T ss_pred ------------------------------EEecCccc-cccHHHHHHH-----HHcCCCEEEEEEeChhHHHHH----H
Confidence 99999999 9999999999 999999999999999852211 1
Q ss_pred hHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcch
Q psy14416 981 ASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQN 1055 (1065)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~ 1055 (1065)
........ .......+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++++.++..+
T Consensus 486 ~~~~~~~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIev~id~~~~~~~~~ 555 (569)
T PRK09259 486 VNLSGAGD----PSPTVLVHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIAS-GKPTLINVVIDPAAGTESGH 555 (569)
T ss_pred HHhhcCCC----ccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEECCCCCCCccc
Confidence 11101011 112334467999999999999999999999999999999986 89999999999988877633
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-76 Score=719.17 Aligned_cols=542 Identities=23% Similarity=0.312 Sum_probs=429.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||++|||+||+.+.+|++++.++ +|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 11 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 90 (585)
T PLN02470 11 EPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATN 90 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357899999999999999999999999999999999654 7999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+.+....+.+.+|++||..+|+++|||++++.+++++++.+++|++.|.++|+|||||+|
T Consensus 91 ~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 170 (585)
T PLN02470 91 LVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDI 170 (585)
T ss_pred HHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.+++...... +... . + ........++.+.+++++++|.+||||+
T Consensus 171 P~Dv~~~~~~~~~~~--~~~~-~--~--------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPv 219 (585)
T PLN02470 171 PKDIQQQLAVPNWNQ--PMKL-P--G--------------------------YLSRLPKPPEKSQLEQIVRLISESKRPV 219 (585)
T ss_pred cCchhhhhccccccc--cccc-c--c--------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCCE
Confidence 999987764321000 0000 0 0 0011122456788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++. ++.++|++|+|++++||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..
T Consensus 220 I~~G~g~~--~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~ 297 (585)
T PLN02470 220 VYVGGGCL--NSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVTGK 297 (585)
T ss_pred EEECCChh--hhHHHHHHHHHHhCCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCC
Confidence 99999886 5578999999999999999999999999999999873 34578899999999999988765433
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+. .+.++.++||||.|+..+++.+..++.|++|+..+|++|.+.+...... ......|.+.+.+..++.....+
T Consensus 298 ~~-~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--- 371 (585)
T PLN02470 298 LE-AFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAK--RPDFSAWRAELDEQKEKFPLSYP--- 371 (585)
T ss_pred hh-hcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhhhcccc--ccchHHHHHHHHHHHHhChhccc---
Confidence 32 2445678999999999999999999999999999999999887531100 01224566555443322111100
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|+|.+++.|.|++..
T Consensus 372 ---------------------------~~~~~l-----~---~~~~~~-----------~l~~~~~~d~iv~~d~G~~~~ 405 (585)
T PLN02470 372 ---------------------------TFGDAI-----P---PQYAIQ-----------VLDELTDGNAIISTGVGQHQM 405 (585)
T ss_pred ---------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCEEEEECCcHHHH
Confidence 011245 6 667888 999999999999999987666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| ..++.
T Consensus 406 ~~~~~~~~-----------------------------------------------~~p-------~~~~~---------- 421 (585)
T PLN02470 406 WAAQWYKY-----------------------------------------------KEP-------RRWLT---------- 421 (585)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeEEc----------
Confidence 64433221 001 00111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
++-+|+| |+++++++ ||+++. |+++|
T Consensus 422 ----------------~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~V 447 (585)
T PLN02470 422 ----------------SGGLGAM----------------------------GFGLPAAI--GAAAAN--------PDAIV 447 (585)
T ss_pred ----------------CCccccc----------------------------cchHHHHH--HHHHhC--------CCCcE
Confidence 2224444 99999998 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+.
T Consensus 448 v---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~v~ivV~NN~~-yg~i~ 487 (585)
T PLN02470 448 V---------------------------------DIDGDGSF-IMNIQELATI-----HVENLPVKIMVLNNQH-LGMVV 487 (585)
T ss_pred E---------------------------------EEEccchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-chHHH
Confidence 9 99999999 9999999999 9999999999999987 44333
Q ss_pred hhhHhHHhhcCCcc-cC--CCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 977 EATYASIVESGEVT-TV--SPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.+ .....+... .. .+.....+.+||.++|++||+++++|+|.+||+++|+++++. ++|.||||.++++++..
T Consensus 488 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lieV~i~~~~~~~ 563 (585)
T PLN02470 488 QWE--DRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLDT-PGPYLLDVIVPHQEHVL 563 (585)
T ss_pred HHH--HHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEeCCccCcC
Confidence 221 111111100 00 011111123799999999999999999999999999999986 89999999999877553
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-76 Score=716.96 Aligned_cols=543 Identities=21% Similarity=0.325 Sum_probs=433.5
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
++++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N 81 (574)
T PRK06882 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHH
Confidence 34789999999999999999999999999999999976 47999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++++|++|+.+++|||+|+|+++....+++++|++||..+|+++|||+.++.+++++.+.+++|++.|.++++|||||+|
T Consensus 82 ~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (574)
T PRK06882 82 AITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDI 161 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++.+.....+.+.. + ........++++.+++++++|.+||||+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~------~-------------------------~~~~~~~~~~~~~i~~~~~~l~~A~rPv 210 (574)
T PRK06882 162 PKDMVNPANKFTYEYPEEVS------L-------------------------RSYNPTVQGHKGQIKKALKALLVAKKPV 210 (574)
T ss_pred CHHHhhhhcccccccCcccc------c-------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 99998655431100000000 0 0001112346788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||++|+++||.+|++||+++|. ...+++++|||||.+|+++++..+..
T Consensus 211 i~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~ 290 (574)
T PRK06882 211 LFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNN 290 (574)
T ss_pred EEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCccccCc
Confidence 99999998888889999999999999999999999999999999873 34568889999999999998876544
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+.. +.++.++||||.|+..+++.++.++.|.+|+..+|++|.+.+..+...........|.+.++++........ .
T Consensus 291 ~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 366 (574)
T PRK06882 291 LAK-YCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEF--D- 366 (574)
T ss_pred hhh-cCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhh--c-
Confidence 432 456678999999999999999999999999999999999877521100001123456665543322111000 0
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
....++ + +..+++ .|.+.+|++.+++.|+|++..
T Consensus 367 ---------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ii~~d~g~~~~ 400 (574)
T PRK06882 367 ---------------------------RTSDVI-----K---PQQVVE-----------AIYRLTNGDAYVASDVGQHQM 400 (574)
T ss_pred ---------------------------cCCCCc-----C---HHHHHH-----------HHHhhcCCCeEEEecCchhHH
Confidence 001235 5 667888 999999999999999987666
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| +.++
T Consensus 401 ~~~~~~~~-----------------------------------------------~~p-------~~~~----------- 415 (574)
T PRK06882 401 FAALHYPF-----------------------------------------------DKP-------RRWI----------- 415 (574)
T ss_pred HHHHhccc-----------------------------------------------cCC-------CcEE-----------
Confidence 64432211 001 1111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
|+|-+|+| |+++|+++ |++++. |+++|
T Consensus 416 ---------------~~~~~g~m----------------------------G~~lp~ai--Ga~la~--------p~~~v 442 (574)
T PRK06882 416 ---------------NSGGAGTM----------------------------GFGLPAAI--GVKFAH--------PEATV 442 (574)
T ss_pred ---------------eCCCcccc----------------------------cchhHHHH--HHHhhc--------CCCcE
Confidence 23445666 99999988 999998 89999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
| +++|||+| +|+.++|+|+ +++++|+++||+||+| |+.+.
T Consensus 443 v---------------------------------~i~GDG~f-~~~~~eL~ta-----~~~~lpv~~vV~NN~~-~~~i~ 482 (574)
T PRK06882 443 V---------------------------------CVTGDGSI-QMNIQELSTA-----KQYDIPVVIVSLNNRF-LGMVK 482 (574)
T ss_pred E---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEECch-hHHHH
Confidence 9 99999999 9999999999 9999999999999987 54433
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
... .....+... .....+..||.++|++||+++++|+|.+||+++|+++++..++|+||||.++++++..
T Consensus 483 ~~q--~~~~~~~~~----~~~~~~~~d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~liev~i~~~~~~~ 552 (574)
T PRK06882 483 QWQ--DLIYSGRHS----QVYMNSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDKLVFVDVNVDETEHVY 552 (574)
T ss_pred HHH--HHhcCCccc----ccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEecCccccC
Confidence 221 111111111 1111245799999999999999999999999999999975478999999999887653
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-76 Score=714.96 Aligned_cols=535 Identities=24% Similarity=0.299 Sum_probs=432.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||++|||+||+.+.++++++.+ ++|++|.++||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 3678999999999999999999999999999999965 489999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|+|+.+....+.+.+|++||.++++++|||+.++++++++.+.+++|++.|++++||||||+||
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++..... +... ........++++.+++++++|++||||+|
T Consensus 162 ~Dv~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~A~rPvi 208 (563)
T PRK08527 162 KDVTATLGEFEYPK--EISL-------------------------------KTYKPTYKGNSRQIKKAAEAIKEAKKPLF 208 (563)
T ss_pred HhHhhhhhcccccc--cccc-------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCCEE
Confidence 99987664321000 0000 00011123567889999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
++|.++.++++.++|++|+|++++||++|+++||.+|++||+++|. ..++++++||+||.+|+++++..+..+
T Consensus 209 v~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~ 288 (563)
T PRK08527 209 YLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKL 288 (563)
T ss_pred EECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCccccCCh
Confidence 9999998888899999999999999999999999999999999873 356788999999999999987655433
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
..+.++.++||||.|+..+++.+..++.+++|+..+|++|.+.++... ......|.+.+.+..+...... .
T Consensus 289 -~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~--~-- 359 (563)
T PRK08527 289 -SEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKEEN----PTTYKEWREILKRYNELHPLSY--E-- 359 (563)
T ss_pred -hhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhcc----ccchHHHHHHHHHHHHhCcccc--c--
Confidence 234566789999999999999888999999999999999999875211 0122457665543322111000 0
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
....|+ + +..+++ .|.+.+|+|.+++.|+|++..|
T Consensus 360 --------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~iv~~d~g~~~~~ 394 (563)
T PRK08527 360 --------------------------DSDEVL-----K---PQWVIE-----------RVGELLGDDAIISTDVGQHQMW 394 (563)
T ss_pred --------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHHH
Confidence 012245 6 777888 9999999999999999875555
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
...++.. ..| +.++.
T Consensus 395 ~~~~~~~-----------------------------------------------~~~-------~~~~~----------- 409 (563)
T PRK08527 395 VAQFYPF-----------------------------------------------NYP-------RQLAT----------- 409 (563)
T ss_pred HHHhccc-----------------------------------------------CCC-------CeEEc-----------
Confidence 3322110 001 11111
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+|-+|+| |+++|+++ ||+++. |+++|+
T Consensus 410 ---------------~~~~g~m----------------------------G~~l~~ai--Ga~la~--------p~~~vv 436 (563)
T PRK08527 410 ---------------SGGLGTM----------------------------GYGLPAAL--GAKLAV--------PDKVVI 436 (563)
T ss_pred ---------------CCCcccc----------------------------cchHHHHH--HHHHhC--------CCCcEE
Confidence 2224555 99999988 999998 899999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||++ |+.+..
T Consensus 437 ---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~lpvi~vV~NN~~-~~~i~~ 476 (563)
T PRK08527 437 ---------------------------------NFTGDGSI-LMNIQELMTA-----VEYKIPVINIILNNNF-LGMVRQ 476 (563)
T ss_pred ---------------------------------EEecCchh-cccHHHHHHH-----HHhCCCeEEEEEECCc-chhHHH
Confidence 99999999 9999999999 9999999999999987 443332
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
. ......+. .......+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++.++..
T Consensus 477 ~--~~~~~~~~----~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lieV~v~~~~~~~ 544 (563)
T PRK08527 477 W--QTFFYEER----YSETDLSTQPDFVKLAESFGGIGFRVTTKEEFDKALKEALES-DKVALIDVKIDRFENVL 544 (563)
T ss_pred H--HHhhcCCc----eeeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEECCccccc
Confidence 1 11111111 111222346899999999999999999999999999999986 89999999999877553
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-76 Score=721.94 Aligned_cols=540 Identities=22% Similarity=0.279 Sum_probs=435.2
Q ss_pred cccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecc
Q psy14416 263 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 338 (1065)
Q Consensus 263 ~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsG 338 (1065)
...+++++++|++.|+++||+||||+||+.+.++++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|
T Consensus 15 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~G 94 (616)
T PRK07418 15 TPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSG 94 (616)
T ss_pred CCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3457899999999999999999999999999999999953 369999999999999999999999999999999999
Q ss_pred ccccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCE
Q psy14416 339 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGV 418 (1065)
Q Consensus 339 pG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GP 418 (1065)
||++|+++||++|+.+++|||+|+|+.+....+++.+|++||..+|+++|||+.++.+++++++.+++|++.|.++||||
T Consensus 95 PG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GP 174 (616)
T PRK07418 95 PGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGP 174 (616)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHh
Q psy14416 419 SYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILE 498 (1065)
Q Consensus 419 V~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~ 498 (1065)
|||+||.|++.++++..... +... +. ......+.++++++++++++|++
T Consensus 175 v~l~iP~Dv~~~~~~~~~~~--~~~~----~~-------------------------~~~~~~~~~~~~~v~~~~~~L~~ 223 (616)
T PRK07418 175 VLIDIPKDVGQEEFDYVPVE--PGSV----KP-------------------------PGYRPTVKGNPRQINAALKLIEE 223 (616)
T ss_pred EEEecchhhhhchhcccccC--cccc----cc-------------------------CCCCCCCCCCHHHHHHHHHHHHh
Confidence 99999999988775421100 0000 00 00011234678899999999999
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccc
Q psy14416 499 AKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 499 AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~ 571 (1065)
||||+|++|.++.++++.++|++|||++|+||++|+++||++|++||+++|. ..++++++||+||.+|+++++
T Consensus 224 AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~ 303 (616)
T PRK07418 224 AERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDD 303 (616)
T ss_pred CCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCc
Confidence 9999999999998888899999999999999999999999999999999883 356788999999999999987
Q ss_pred ccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhc
Q psy14416 572 ILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQV 651 (1065)
Q Consensus 572 ~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 651 (1065)
..+..+ ..+.++.++||||.|+..+++.+..++.|++|+..+|++|.+.++.... ......|.+.++++++.....
T Consensus 304 ~~~~~~-~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ 379 (616)
T PRK07418 304 RVTGKL-DEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSLEPTT---PPRTQAWLERINRWKQDYPLV 379 (616)
T ss_pred cccCCh-hhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhhcccc---ccchHHHHHHHHHHHHhCccc
Confidence 655333 2355667899999999999999999999999999999999988752110 012356766555433321110
Q ss_pred ccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECC
Q psy14416 652 KLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNN 731 (1065)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~ 731 (1065)
. . ....++ + +..+++ +|.+.+| +.+++.|.
T Consensus 380 ~--~----------------------------~~~~~l-----~---~~~v~~-----------~l~~~~~-d~i~~~D~ 409 (616)
T PRK07418 380 V--P----------------------------PYEGEI-----Y---PQEVLL-----------AVRDLAP-DAYYTTDV 409 (616)
T ss_pred c--c----------------------------CCCCCc-----C---HHHHHH-----------HHHhhCC-CcEEEECC
Confidence 0 0 112346 6 777888 9999998 69999999
Q ss_pred CCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccc
Q psy14416 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 811 (1065)
Q Consensus 732 G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 811 (1065)
|++..|..+++.. .| ..++.
T Consensus 410 G~~~~~~~~~~~~------------------------------------------------~p-------~~~~~----- 429 (616)
T PRK07418 410 GQHQMWAAQFLRN------------------------------------------------GP-------RRWIS----- 429 (616)
T ss_pred hHHHHHHHHhhhc------------------------------------------------CC-------CeEEc-----
Confidence 8766664432210 00 00111
Q ss_pred ccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccc
Q psy14416 812 SIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL 891 (1065)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 891 (1065)
++-+|+| |+++|+++ ||+++.
T Consensus 430 ---------------------s~~~g~m----------------------------G~glpaAi--GA~lA~-------- 450 (616)
T PRK07418 430 ---------------------SAGLGTM----------------------------GFGMPAAM--GVKVAL-------- 450 (616)
T ss_pred ---------------------CCCcccc----------------------------ccHHHHHH--HHHHhC--------
Confidence 2224455 99999998 999998
Q ss_pred ccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcc
Q psy14416 892 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 971 (1065)
Q Consensus 892 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~ 971 (1065)
|+++|+ +++|||+| +|+.++|+|+ +|+++|+++||+||++
T Consensus 451 p~r~Vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----~r~~lpvi~vV~NN~~- 490 (616)
T PRK07418 451 PDEEVI---------------------------------CIAGDASF-LMNIQELGTL-----AQYGINVKTVIINNGW- 490 (616)
T ss_pred CCCcEE---------------------------------EEEcchHh-hhhHHHHHHH-----HHhCCCeEEEEEECCc-
Confidence 999999 99999999 9999999999 9999999999999987
Q ss_pred cCCCchhhHhHHhhcCCcccCCCCCCC-CCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 972 YGGFDEATYASIVESGEVTTVSPPTSL-GPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
|+.+.... ...+ ... +. ...+ .+.+||.++|++||++|++|+|.+||+++|+++++. ++|+||||.++++++
T Consensus 491 ~g~i~~~q-~~~~-~~~---~~-~~~~~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~~~-~~p~lIeV~i~~~~~ 563 (616)
T PRK07418 491 QGMVRQWQ-ESFY-GER---YS-ASNMEPGMPDFVKLAEAFGVKGMVISERDQLKDAIAEALAH-DGPVLIDVHVRRDEN 563 (616)
T ss_pred chHHHHHH-HHhc-CCC---ce-eecCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCccc
Confidence 44333221 1111 111 11 1111 246899999999999999999999999999999986 899999999998886
Q ss_pred CCc
Q psy14416 1051 RKP 1053 (1065)
Q Consensus 1051 ~~~ 1053 (1065)
.++
T Consensus 564 ~~~ 566 (616)
T PRK07418 564 CYP 566 (616)
T ss_pred cCC
Confidence 543
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-76 Score=716.59 Aligned_cols=557 Identities=19% Similarity=0.253 Sum_probs=431.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+++++++|++.|+++||++|||+||+.+.++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~ 80 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV 80 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 36899999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+....+.+.+|++||..+|+++|||+.++.+++++++.+++|++.|.+++ |||||+||.
T Consensus 81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GPV~l~iP~ 159 (579)
T TIGR03457 81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPR 159 (579)
T ss_pred HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CCEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++..... +. . .....++++.+++++++|++||||+|+
T Consensus 160 Dv~~~~~~~~~~~--~~---------------------------------~--~~~~~~~~~~i~~~~~~L~~A~rP~i~ 202 (579)
T TIGR03457 160 DYFYGEIDVEIPR--PV---------------------------------R--LDRGAGGATSLAQAARLLAEAKFPVII 202 (579)
T ss_pred chhhhhcccccCc--cc---------------------------------c--cCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 9988776421100 00 0 012235778899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc-CC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF-GR 577 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~-g~ 577 (1065)
+|.++.++++.++|++|||++|+||++|+++||.+|++||+++|. ...+++++|||||.+|+++++..+. ++
T Consensus 203 ~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~ 282 (579)
T TIGR03457 203 SGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQY 282 (579)
T ss_pred ECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCccccccccc
Confidence 999998888899999999999999999999999999999999983 3567889999999999998754332 11
Q ss_pred C-ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 578 A-PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 578 ~-~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
. ..+.+++++||||.|+..+++++..++.|++|++.+|++|.+.+..+... ..+..|.+.+.+....+.+...+.-
T Consensus 283 ~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (579)
T TIGR03457 283 GIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGD---ANRAERKAKIQAERSAWEQELSEMT 359 (579)
T ss_pred ccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhhhcccc---cchhhhhhhhhhhHHHHHHHHHHHH
Confidence 1 12345678999999999999999999999999999999999987521000 0111222111111111111110000
Q ss_pred hhhhccCCccCCC-CccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 657 LVIVNNNGIYGGF-DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 657 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
.......... ++ .......++ + +..+++ .|.+.+|++++++.|.|++.
T Consensus 360 ---~~~~~~~~~~~~~---------~~~~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iv~~d~G~~~ 408 (579)
T TIGR03457 360 ---HERDPFSLDMIVE---------QRQEEGNWL-----H---PRQVLR-----------ELEKAMPEDAIVSTDIGNIN 408 (579)
T ss_pred ---hhccccccccccc---------cccCCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEECCchhH
Confidence 0000000000 00 000112345 6 777888 99999999999999999877
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| +.++.
T Consensus 409 ~~~~~~~~~-----------------------------------------------~~p-------~~~~~--------- 425 (579)
T TIGR03457 409 SVANSYLRF-----------------------------------------------EKP-------RKFLA--------- 425 (579)
T ss_pred HHHHHhcCc-----------------------------------------------CCC-------CeEEc---------
Confidence 665433221 001 01111
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+|-+|+| |+++|+++ ||+++. |+++
T Consensus 426 -----------------~~~~g~m----------------------------G~~lpaai--Ga~la~--------p~~~ 450 (579)
T TIGR03457 426 -----------------PMSFGNC----------------------------GYAFPTII--GAKIAA--------PDRP 450 (579)
T ss_pred -----------------CCccccc----------------------------cchHHHHH--hhhhhC--------CCCc
Confidence 2224455 99999998 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+..
T Consensus 451 Vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----vr~~lpvi~vV~NN~~-yg~i 490 (579)
T TIGR03457 451 VV---------------------------------AYAGDGAW-GMSMNEIMTA-----VRHDIPVTAVVFRNRQ-WGAE 490 (579)
T ss_pred EE---------------------------------EEEcchHH-hccHHHHHHH-----HHhCCCeEEEEEECcc-hHHH
Confidence 99 99999999 9999999999 9999999999999988 4433
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhc--CCCCEEEEEEeCCCCCCCc
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT--TTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~li~~~~~~~~~~~~ 1053 (1065)
... ... ...+. .......+.+||.++|++||+++++|++.+||+.+|+++++. .++|+||||.+++++...-
T Consensus 491 ~~~-~~~-~~~~~----~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~~~~~p~lieV~v~~~~~~~~ 564 (579)
T TIGR03457 491 KKN-QVD-FYNNR----FVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIEIVCTRELGDPF 564 (579)
T ss_pred HHH-HHH-hhCCc----ceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCcCCch
Confidence 221 111 11111 111222344899999999999999999999999999999872 3789999999998886433
Q ss_pred chhhhh
Q psy14416 1054 QNFSWL 1059 (1065)
Q Consensus 1054 ~~~~~~ 1059 (1065)
...|+
T Consensus 565 -~~~~~ 569 (579)
T TIGR03457 565 -RRDAL 569 (579)
T ss_pred -hhhhc
Confidence 33454
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-76 Score=712.07 Aligned_cols=527 Identities=21% Similarity=0.309 Sum_probs=426.9
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccc
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGM 348 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av 348 (1065)
++++|++.|+++||+++||+||+.+.++++++.+++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++||
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl 80 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL 80 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence 36899999999999999999999999999999878899999999999999999999999999999999999999999999
Q ss_pred ccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhh
Q psy14416 349 ANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLL 428 (1065)
Q Consensus 349 ~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~ 428 (1065)
++|+.+++|||+|+|+.+....+.+.+|++||..+|+++|||+.++.+++++++.+++|++.|.++|||||||+||.|++
T Consensus 81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~ 160 (539)
T TIGR02418 81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV 160 (539)
T ss_pred HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q psy14416 429 AQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGK 508 (1065)
Q Consensus 429 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlvG~ 508 (1065)
.++++..... . ........++.+.+++++++|++||||+|++|.
T Consensus 161 ~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~ 204 (539)
T TIGR02418 161 DSPVSVKAIP---A---------------------------------SYAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGL 204 (539)
T ss_pred hCcccccccC---c---------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 8876532111 0 001111234667899999999999999999999
Q ss_pred CCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCC-cccccH-------HHHhhhcCCCEEEEeCCccccccccCCCcc
Q psy14416 509 GAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAH-PNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAPR 580 (1065)
Q Consensus 509 g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~h-pl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~~ 580 (1065)
++.++++.+++++|+|++|+||++|+++||.+|++| |+++|. ...+++++||+||.+|+++.+.....|..
T Consensus 205 g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~- 283 (539)
T TIGR02418 205 RASSPETTEAVRRLLKKTQLPVVETFQGAGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNS- 283 (539)
T ss_pred CcCcccHHHHHHHHHHHhCCCEEEccccCcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccCccccCc-
Confidence 998888899999999999999999999999999997 777762 44578899999999999987655444432
Q ss_pred ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhh
Q psy14416 581 FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIV 660 (1065)
Q Consensus 581 ~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 660 (1065)
.++.++||||.|+..+++.+..++.|++|++.+|++|.+.++... . .....+|.+.++...+...+...+
T Consensus 284 -~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~------ 353 (539)
T TIGR02418 284 -ENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYE--L-PPDALAILEDLKQQREALDRVPAT------ 353 (539)
T ss_pred -CCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhcccc--C-ccchHHHHHHHHHHHHHhhhcccc------
Confidence 234689999999999999999999999999999999998775211 0 011234555544433222111000
Q ss_pred ccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccccc
Q psy14416 661 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 740 (1065)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~~ 740 (1065)
....++ + +..+++ .|.+.+|++.+++.|+|++..|...
T Consensus 354 -----------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ii~~d~G~~~~~~~~ 391 (539)
T TIGR02418 354 -----------------------LKQAHL-----H---PLEIIK-----------AMQAIVTDDVTVTVDMGSHYIWMAR 391 (539)
T ss_pred -----------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCCEEEECCcHHHHHHHH
Confidence 011245 6 677888 9999999999999999987777553
Q ss_pred chhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccccee
Q psy14416 741 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 820 (1065)
Q Consensus 741 ~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 820 (1065)
++.. ..| +.++.
T Consensus 392 ~~~~-----------------------------------------------~~~-------~~~~~-------------- 403 (539)
T TIGR02418 392 YFRS-----------------------------------------------YRA-------RHLLI-------------- 403 (539)
T ss_pred hccc-----------------------------------------------CCC-------Cceec--------------
Confidence 3221 000 00000
Q ss_pred eccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEcc
Q psy14416 821 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 900 (1065)
Q Consensus 821 ~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 900 (1065)
++-+|+ ||+++++++ ||+++. |+++|+
T Consensus 404 ------------~~~~g~----------------------------mG~~lpaai--Ga~la~--------~~~~vv--- 430 (539)
T TIGR02418 404 ------------SNGMQT----------------------------LGVALPWAI--GAALVR--------PNTKVV--- 430 (539)
T ss_pred ------------CCCccc----------------------------cccHHHHHH--HHHHhC--------CCCcEE---
Confidence 111334 499999999 999998 899999
Q ss_pred CcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhH
Q psy14416 901 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATY 980 (1065)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~ 980 (1065)
+++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+...+
T Consensus 431 ------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpi~ivV~NN~~-y~~~~~~~- 472 (539)
T TIGR02418 431 ------------------------------SVSGDGGF-LFSSMELETA-----VRLKLNIVHIIWNDNG-YNMVEFQE- 472 (539)
T ss_pred ------------------------------EEEcchhh-hchHHHHHHH-----HHhCCCeEEEEEECCc-chHHHHHH-
Confidence 99999999 9999999999 9999999999999976 55443211
Q ss_pred hHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 981 ASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
...+ +. .. ....+++||.++|++||+++.+|++.+||+++|+++++. ++|+||||.+++++..
T Consensus 473 ~~~~--~~----~~-~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~-~~p~lIev~v~~~~~~ 535 (539)
T TIGR02418 473 EMKY--QR----SS-GVDFGPIDFVKYAESFGAKGLRVESPDQLEPTLRQAMEV-EGPVVVDIPVDYSDNP 535 (539)
T ss_pred HHhc--CC----cc-cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCcccc
Confidence 1111 11 11 112257999999999999999999999999999999986 8999999999988774
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-75 Score=714.08 Aligned_cols=527 Identities=23% Similarity=0.360 Sum_probs=427.1
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
..++++++|++.|+++||+++||+||+++.+|++++.+ .+|++|.++||++|+|||+||+|+||+|+||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~ 81 (576)
T PRK08611 2 AKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAI 81 (576)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHH
Confidence 45789999999999999999999999999999999964 4799999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++|+++|+.+++|||+|+|+++....+++++|++||.++|+++|||++++.+++++++.+++|++.|.++ +|||||+
T Consensus 82 N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~-~GPV~l~ 160 (576)
T PRK08611 82 HLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEK-KGVAVLT 160 (576)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 5999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++.....+.+ ........++++.+++++++|++||||
T Consensus 161 iP~Dv~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrP 206 (576)
T PRK08611 161 IPDDLPAQKIKDTTNKTVD----------------------------------TFRPTVPSPKPKDIKKAAKLINKAKKP 206 (576)
T ss_pred eChhhhhcccccccccccc----------------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCc
Confidence 9999988776432110000 001122346778899999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|++|.++. .+.+++++|+|++|+||++|+++||.+|++||+++|. ...++++++|+||.+|+++.+..
T Consensus 207 vil~G~g~~--~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~~-- 282 (576)
T PRK08611 207 VILAGLGAK--HAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVD-- 282 (576)
T ss_pred EEEECcCcc--hHHHHHHHHHHHhCCCEEEccccccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCccc--
Confidence 999999986 4568999999999999999999999999999999873 34567889999999999876431
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
+ ++++.++||||.|+..+++.+..++.|++|+..+|++|.+.++. .....|.+.+++..+.+++..++.
T Consensus 283 -~---~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 351 (576)
T PRK08611 283 -Y---LPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKH-------VEDRRFLEACQENMAKWWKWMEED 351 (576)
T ss_pred -c---CCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhccc-------ccchHHHHHHHHHHHHHHHHhhhh
Confidence 2 22346899999999999999999999999999999999988752 123457776655544433322111
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
. . ....++ + +..+++ .|.+.+|++.+++.|.|.+.
T Consensus 352 ~------------------~--------~~~~~i-----~---p~~~~~-----------~l~~~l~~~~ivv~d~G~~~ 386 (576)
T PRK08611 352 E------------------N--------NASTPI-----K---PERVMA-----------AIQKIADDDAVLSVDVGTVT 386 (576)
T ss_pred c------------------c--------CCCCCc-----C---HHHHHH-----------HHhhhcCCCeEEEEcChHHH
Confidence 0 0 112245 5 667888 99999999999999998766
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. ..| ..++
T Consensus 387 ~~~~~~~~~-----------------------------------------------~~~-------~~~~---------- 402 (576)
T PRK08611 387 VWSARYLNL-----------------------------------------------GTN-------QKFI---------- 402 (576)
T ss_pred HHHHhcCCc-----------------------------------------------CCC-------CeEE----------
Confidence 654332211 000 0000
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+++-+|+ ||+++++++ |++++. |+++
T Consensus 403 ----------------~~~~~g~----------------------------mG~glpaai--Ga~la~--------p~~~ 428 (576)
T PRK08611 403 ----------------ISSWLGT----------------------------MGCGLPGAI--AAKIAF--------PDRQ 428 (576)
T ss_pred ----------------eCCCchh----------------------------hhhhHHHHH--HHHHhC--------CCCc
Confidence 0111344 499999988 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|| +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+
T Consensus 429 Vv---------------------------------~i~GDGsf-~m~~~eL~Ta-----~r~~l~~iivV~NN~~-~g~i 468 (576)
T PRK08611 429 AI---------------------------------AICGDGGF-SMVMQDFVTA-----VKYKLPIVVVVLNNQQ-LAFI 468 (576)
T ss_pred EE---------------------------------EEEcccHH-hhhHHHHHHH-----HHhCCCeEEEEEeCCc-chHH
Confidence 99 99999999 9999999999 9999999999999987 4433
Q ss_pred chhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 976 DEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.... ... +. .......+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++++...+
T Consensus 469 ~~~q--~~~--~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIeV~vd~~~~~~~ 537 (576)
T PRK08611 469 KYEQ--QAA--GE----LEYAIDLSDMDYAKFAEACGGKGYRVEKAEELDPAFEEALAQ-DKPVIIDVYVDPNAAPLP 537 (576)
T ss_pred HHHH--HHh--cC----CcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCcccCCC
Confidence 2211 111 11 111223456999999999999999999999999999999987 999999999998876544
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-75 Score=710.56 Aligned_cols=542 Identities=22% Similarity=0.326 Sum_probs=431.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc---C-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ---E-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~---~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG 340 (1065)
.+++++++|++.|+++||++|||+||+.+.++++++.+ . +|++|.+|||++|+|||+||+|+||||+||++|+|||
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG 87 (585)
T CHL00099 8 REKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPG 87 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 45789999999999999999999999999999999853 3 4999999999999999999999999999999999999
Q ss_pred ccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEE
Q psy14416 341 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSY 420 (1065)
Q Consensus 341 ~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~ 420 (1065)
++|+++||++|+.+++|||+|+|+.++.+.+.+++|++||..+++++|||+.++.+++++++.+++|++.|.++||||||
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~ 167 (585)
T CHL00099 88 ATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVL 167 (585)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCC
Q psy14416 421 LDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 421 L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Ak 500 (1065)
|+||.|++.++++..... +.. .. ++ .........++++.+++++++|++||
T Consensus 168 l~iP~Dv~~~~~~~~~~~--~~~--~~--~~-----------------------~~~~~~~~~~~~~~v~~a~~~L~~Ak 218 (585)
T CHL00099 168 IDIPKDVGLEKFDYYPPE--PGN--TI--IK-----------------------ILGCRPIYKPTIKRIEQAAKLILQSS 218 (585)
T ss_pred EecChhhhhhhccccccc--ccc--cc--cc-----------------------cccCCCCCCCCHHHHHHHHHHHHcCC
Confidence 999999987776421110 000 00 00 00011123467889999999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWIL 573 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~ 573 (1065)
||+||+|.++.++++.++|++|+|++|+||++|+++||++|++||+++|. ..+.++++|||||.+|+++++..
T Consensus 219 rPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~ 298 (585)
T CHL00099 219 QPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRV 298 (585)
T ss_pred CcEEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccc
Confidence 99999999998888899999999999999999999999999999999883 34567899999999999998765
Q ss_pred ccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhccc
Q psy14416 574 HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKL 653 (1065)
Q Consensus 574 ~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 653 (1065)
+..+ ..+.++.++||||.|+..+++++..++.+.+|+..+|++|.+.++.............|.+.++...+......
T Consensus 299 ~~~~-~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 376 (585)
T CHL00099 299 TGKL-DEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLI- 376 (585)
T ss_pred cCCH-hHcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhc-
Confidence 4333 22455678999999999999999899999999999999999877521110000112456555543322111000
Q ss_pred chhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCC
Q psy14416 654 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 733 (1065)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~ 733 (1065)
. ....|+ + +..+++ +|.+.+| |.+++.|+|+
T Consensus 377 -~----------------------------~~~~~l-----~---~~~~~~-----------~l~~~~~-d~iv~~d~G~ 407 (585)
T CHL00099 377 -P----------------------------KPSTSL-----S---PQEVIN-----------EISQLAP-DAYFTTDVGQ 407 (585)
T ss_pred -c----------------------------ccCCCc-----C---HHHHHH-----------HHHhhCC-CeEEEECCcH
Confidence 0 012356 7 778888 9999999 9999999987
Q ss_pred cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccc
Q psy14416 734 YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASI 813 (1065)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 813 (1065)
+..|...++.. .| ..++.
T Consensus 408 ~~~~~~~~~~~------------------------------------------------~~-------~~~~~------- 425 (585)
T CHL00099 408 HQMWAAQFLKC------------------------------------------------KP-------RKWLS------- 425 (585)
T ss_pred HHHHHHHhccC------------------------------------------------CC-------CcEEc-------
Confidence 66664432210 00 01111
Q ss_pred ccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccccc
Q psy14416 814 VESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 893 (1065)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 893 (1065)
++-+|+| |+++|+++ ||+++. |+
T Consensus 426 -------------------~~~~g~m----------------------------G~glpaai--Gaala~--------p~ 448 (585)
T CHL00099 426 -------------------SAGLGTM----------------------------GYGLPAAI--GAQIAH--------PN 448 (585)
T ss_pred -------------------Cccccch----------------------------hhhHHHHH--HHHHhC--------CC
Confidence 2224444 99999988 999998 99
Q ss_pred EEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccC
Q psy14416 894 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 973 (1065)
Q Consensus 894 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~ 973 (1065)
++|+ +++|||+| +|+.++|+|+ +++++|+++||+||++ |+
T Consensus 449 ~~vv---------------------------------~i~GDG~f-~m~~~eL~Ta-----~~~~l~~~~vV~NN~~-y~ 488 (585)
T CHL00099 449 ELVI---------------------------------CISGDASF-QMNLQELGTI-----AQYNLPIKIIIINNKW-QG 488 (585)
T ss_pred CeEE---------------------------------EEEcchhh-hhhHHHHHHH-----HHhCCCeEEEEEECCc-ch
Confidence 9999 99999999 9999999999 9999999999999987 44
Q ss_pred CCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 974 GFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
.+.... .....+... ......+.+||.++|++||+.+++|++.+||+++|+++++. ++|.||||.++++++.
T Consensus 489 ~i~~~q--~~~~~~~~~---~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~v~~~~~~ 560 (585)
T CHL00099 489 MVRQWQ--QAFYGERYS---HSNMEEGAPDFVKLAEAYGIKGLRIKSRKDLKSSLKEALDY-DGPVLIDCQVIEDENC 560 (585)
T ss_pred HHHHHH--HHhcCCCcc---cccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEECCCccc
Confidence 333221 111111111 11111246899999999999999999999999999999986 8999999999987764
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-75 Score=712.12 Aligned_cols=533 Identities=18% Similarity=0.262 Sum_probs=430.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+++++++|++.|+++||+||||+||+.+.+|++++.+ .+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 81 (597)
T PRK08273 2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH 81 (597)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 3689999999999999999999999999999999965 36999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccc-cEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC-KYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~-k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||.++|+++| ||+.++.+++++++.+++|++.|++++ |||||+
T Consensus 82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~i~ 160 (597)
T PRK08273 82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVI 160 (597)
T ss_pred HHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999865 999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
||.|++.++++.+.....+.. .. + ........++++.+++++++|++||||
T Consensus 161 iP~Dv~~~~~~~~~~~~~~~~--~~---------------------~------~~~~~~~~~~~~~i~~a~~~L~~AkrP 211 (597)
T PRK08273 161 LPNDVQELEYEPPPHAHGTVH--SG---------------------V------GYTRPRVVPYDEDLRRAAEVLNAGRKV 211 (597)
T ss_pred eCcchhhCcccCccccccccc--cc---------------------c------CCCCCCCCCCHHHHHHHHHHHhcCCCE
Confidence 999998766532211000000 00 0 001122346788999999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|++|.++. ++.+++.+|||++|+||++|++|||.+|++||+++|. ..++.+++|||||.+|+++++..
T Consensus 212 vi~~G~g~~--~a~~~l~~lae~~~~PV~tt~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~~-- 287 (597)
T PRK08273 212 AILVGAGAL--GATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYSE-- 287 (597)
T ss_pred EEEECcchH--hHHHHHHHHHHHhCCceeecccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHHh--
Confidence 999999986 6788999999999999999999999999999999973 45677899999999999986431
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
+... .++.++||||.|+..+++.++.++.|++|+..+|++|.+.++. .....|.+.+.+..+.+.+...+.
T Consensus 288 -~~~~-~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 358 (597)
T PRK08273 288 -FLPK-EGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLER-------KKDRSWRERIEKWVARWWETLEAR 358 (597)
T ss_pred -cCCC-CCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhhc-------cCCHHHHHHHHHHHHHhHhhhhhh
Confidence 2211 2356899999999999999999999999999999999988762 123467776665555443332111
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
.. .+..|+ + +..+++ .|.+.+|++.+++.|.|++.
T Consensus 359 -------------------~~-------~~~~~l-----~---p~~~~~-----------~l~~~l~~~~ivv~d~G~~~ 393 (597)
T PRK08273 359 -------------------AM-------VPADPV-----N---PQRVFW-----------ELSPRLPDNAILTADSGSCA 393 (597)
T ss_pred -------------------hc-------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHH
Confidence 00 112356 7 778899 99999999999999999866
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|..+++.. . .+ ..
T Consensus 394 ~~~~~~~~~-----~------------------------------------------~~-------~~------------ 407 (597)
T PRK08273 394 NWYARDLRM-----R------------------------------------------RG-------MM------------ 407 (597)
T ss_pred HHHHHhCCC-----C------------------------------------------CC-------Ce------------
Confidence 665433221 0 00 00
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
+-++|.+|+| |+++|+++ ||+++. |+++
T Consensus 408 --------------~~~s~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~ 435 (597)
T PRK08273 408 --------------ASLSGTLATM----------------------------GPAVPYAI--AAKFAH--------PDRP 435 (597)
T ss_pred --------------EEecCccccc----------------------------cchHHHHH--HHHHhC--------CCCc
Confidence 0123446666 99999999 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc-hhhHHHhhccCcccc-----CCCEEEEEEcCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-ETTYASIVESGEVTT-----VLPVILVIVNNN 969 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~v~nn~ 969 (1065)
|+ +++|||+| +|+ .+|++|+ +|+ ++|+++||+||+
T Consensus 436 Vv---------------------------------~i~GDG~f-~m~~~~EL~Ta-----~r~~~~~~~lpviivV~NN~ 476 (597)
T PRK08273 436 VI---------------------------------ALVGDGAM-QMNGMAELITV-----AKYWRQWSDPRLIVLVLNNR 476 (597)
T ss_pred EE---------------------------------EEEcchhH-hccchHHHHHH-----HHHhhcccCCCEEEEEEeCC
Confidence 99 99999999 999 5999999 999 899999999998
Q ss_pred cccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 970 GIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 970 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
| |+.+.... ... .+. . ........+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++++
T Consensus 477 ~-~~~i~~~q-~~~--~~~-~-~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIeV~~~~~~ 549 (597)
T PRK08273 477 D-LNQVTWEQ-RVM--EGD-P-KFEASQDLPDVPYARFAELLGLKGIRVDDPEQLGAAWDEALAA-DRPVVLEVKTDPNV 549 (597)
T ss_pred c-chHHHHHH-HHh--cCC-C-cccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhC-CCCEEEEEEeCCCC
Confidence 8 44333221 111 111 0 1111233467999999999999999999999999999999986 99999999999887
Q ss_pred C
Q psy14416 1050 D 1050 (1065)
Q Consensus 1050 ~ 1050 (1065)
.
T Consensus 550 ~ 550 (597)
T PRK08273 550 P 550 (597)
T ss_pred C
Confidence 3
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-75 Score=706.85 Aligned_cols=522 Identities=21% Similarity=0.295 Sum_probs=416.0
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||+++||+||+++.+|++++++++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~ 81 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN 81 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence 47899999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|+++|+.+++|||+|+|+++....+++++|++||.++|+++|||+.++++++++++.+++|++.|+++ +|||||+||.|
T Consensus 82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~D 160 (549)
T PRK06457 82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGVAHINLPVD 160 (549)
T ss_pred HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 69999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++.+... . .. . ... ......++++++++|++||||+|++
T Consensus 161 v~~~~~~~~~-~---~~--------------------------------~-~~~-~~~~~~~i~~~~~~L~~AkrPvii~ 202 (549)
T PRK06457 161 ILRKSSEYKG-S---KN--------------------------------T-EVG-KVKYSIDFSRAKELIKESEKPVLLI 202 (549)
T ss_pred Hhhccccccc-c---cc--------------------------------c-CCC-CCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 9876543210 0 00 0 000 1112357899999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.++. ++.+++++|||++|+||++|+++||.+|++||+++|. ..++++++||+||.+|+++++.. +
T Consensus 203 G~g~~--~a~~~l~~lAe~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~---~-- 275 (549)
T PRK06457 203 GGGTR--GLGKEINRFAEKIGAPIIYTLNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVN---F-- 275 (549)
T ss_pred Ccchh--hHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhh---c--
Confidence 99886 5568999999999999999999999999999999873 34567889999999999886532 2
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
+.++.++||||.|+..+++.+..++.+++|++.+|+.+.... ...|.+.+++....+.+...+..
T Consensus 276 -~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--- 340 (549)
T PRK06457 276 -LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNIDIEEK-----------SDKFYEELKGKKEDWLDSISKQE--- 340 (549)
T ss_pred -CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHhhcc-----------cchhHHHHHHHHHHHHHHHHHhh---
Confidence 233568999999999999999999999999999995432211 12233333222222222221110
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 739 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~ 739 (1065)
. ....|+ + +..+++ .|.+.+|++.+++.|.|.+..|..
T Consensus 341 ----------------~-------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~iiv~d~g~~~~~~~ 378 (549)
T PRK06457 341 ----------------N-------SLDKPM-----K---PQRVAY-----------IVSQKCKKDAVIVTDTGNVTMWTA 378 (549)
T ss_pred ----------------c-------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcHHHHHHH
Confidence 0 012245 6 777888 999999999999999987665644
Q ss_pred cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccce
Q psy14416 740 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 819 (1065)
Q Consensus 740 ~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 819 (1065)
.++.. ..| +.+
T Consensus 379 ~~~~~-----------------------------------------------~~~-------~~~--------------- 389 (549)
T PRK06457 379 RHFRA-----------------------------------------------SGE-------QTF--------------- 389 (549)
T ss_pred HhCCC-----------------------------------------------CCC-------CeE---------------
Confidence 32211 000 000
Q ss_pred eeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccc-cEEEEE
Q psy14416 820 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIV 898 (1065)
Q Consensus 820 ~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~v~~ 898 (1065)
.+++-+|+| |+++++++ ||+++. | +++|+
T Consensus 390 -----------~~~~~~g~m----------------------------G~glpaai--Ga~la~--------p~~~~Vv- 419 (549)
T PRK06457 390 -----------IFSAWLGSM----------------------------GIGVPGSV--GASFAV--------ENKRQVI- 419 (549)
T ss_pred -----------EeCCCcchh----------------------------hhhHHHHH--HHHhcC--------CCCCeEE-
Confidence 011224444 99999988 999998 8 89999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++|+|+ +++++|+++||+||+| |+.+...
T Consensus 420 --------------------------------~i~GDGsf-~~~~~eL~Ta-----~~~~lpi~ivV~NN~~-~g~i~~~ 460 (549)
T PRK06457 420 --------------------------------SFVGDGGF-TMTMMELITA-----KKYDLPVKIIIYNNSK-LGMIKFE 460 (549)
T ss_pred --------------------------------EEEcccHH-hhhHHHHHHH-----HHHCCCeEEEEEECCc-cchHHHH
Confidence 99999999 9999999999 9999999999999988 4544321
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhh
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
.+.. +. .......+++||.++|++||+++++|++.+||+++++++++. ++|+||||.+++++...+...+|
T Consensus 461 --q~~~--~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~i~~~~~~~~~~~~~ 531 (549)
T PRK06457 461 --QEVM--GY----PEWGVDLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNT-KGPAVLDAIVDPNERPMPPKLTF 531 (549)
T ss_pred --HHHh--cC----CcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCccccCCCCeech
Confidence 1111 10 111223356899999999999999999999999999999986 89999999999888665544443
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-75 Score=705.89 Aligned_cols=534 Identities=23% Similarity=0.331 Sum_probs=431.3
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
++++++|++.|+++||++|||+||+.+.+|++++.+ .+|++|.|+||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 468999999999999999999999999999999974 6899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+|+++|+.+++|||+|+|+++....+.+++|++||.++|+++|||+.++++++++.+.+++|++.|++.|+|||||+||.
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++..... .... ........++++.+++++++|.+||||+|+
T Consensus 161 dv~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~ 207 (558)
T TIGR00118 161 DVTTAEIEYPYPE--KVNL-------------------------------PGYRPTVKGHPLQIKKAAELINLAKKPVIL 207 (558)
T ss_pred hhhhhhccccccc--cccc-------------------------------cCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Confidence 9988776421100 0000 000111235677899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++.++++.++|++|+|++|+||++|+++||.+|++||+++|. ....++++||+||.+|+++++..+..+.
T Consensus 208 ~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~ 287 (558)
T TIGR00118 208 VGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLA 287 (558)
T ss_pred ECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCchh
Confidence 999998888889999999999999999999999999999999883 3467789999999999999876544332
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.+.++.++||||.|+..+++.+..++.+.+|+..+|++|.+.+.... ......|.++++...++..... .
T Consensus 288 -~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~--~--- 357 (558)
T TIGR00118 288 -KFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLFELK----ERKESAWLEQINKWKKEYPLKM--D--- 357 (558)
T ss_pred -hcCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhcc----ccCcHHHHHHHHHHHHhChhhc--c---
Confidence 24456789999999999998888999999999999999998875211 0123457665544332211110 0
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
....++ + +..+++ .|.+.+|++++++.|+|++..|.
T Consensus 358 -------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~~d~g~~~~~~ 393 (558)
T TIGR00118 358 -------------------------YTEEGI-----K---PQQVIE-----------ELSRVTKDEAIVTTDVGQHQMWA 393 (558)
T ss_pred -------------------------CCCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEeCCcHHHHHH
Confidence 012245 6 667888 99999999999999998754443
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++.. ..| ..++
T Consensus 394 ~~~~~~-----------------------------------------------~~p-------~~~~------------- 406 (558)
T TIGR00118 394 AQFYPF-----------------------------------------------RKP-------RRFI------------- 406 (558)
T ss_pred HHhccc-----------------------------------------------CCC-------CeEE-------------
Confidence 322110 001 1111
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
++|-+|+| |+++++++ |++++. |+++|+
T Consensus 407 -------------~~~~~g~m----------------------------G~~l~aai--Ga~la~--------~~~~vv- 434 (558)
T TIGR00118 407 -------------TSGGLGTM----------------------------GFGLPAAI--GAKVAK--------PESTVI- 434 (558)
T ss_pred -------------eCCccccc----------------------------cchhhHHH--hhhhhC--------CCCcEE-
Confidence 23335555 99999988 999998 899999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||++ |+.+...
T Consensus 435 --------------------------------~~~GDG~f-~~~~~eL~ta-----~~~~l~~~~vv~NN~~-~~~~~~~ 475 (558)
T TIGR00118 435 --------------------------------CITGDGSF-QMNLQELSTA-----VQYDIPVKILILNNRY-LGMVRQW 475 (558)
T ss_pred --------------------------------EEEcchHH-hccHHHHHHH-----HHhCCCeEEEEEeCCc-hHHHHHH
Confidence 99999999 9999999999 9999999999999976 4433321
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
. .....+... .....+.+||.++|++||+++++|++.+||+++++++++. ++|+||||.++++++..
T Consensus 476 q--~~~~~~~~~----~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~~p~liev~~~~~~~~~ 542 (558)
T TIGR00118 476 Q--ELFYEERYS----HTHMGSLPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSS-NEPVLLDVVVDKPENVL 542 (558)
T ss_pred H--HHhcCCcee----eccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEeCCccccc
Confidence 1 111111111 1222346999999999999999999999999999999987 89999999999877653
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-75 Score=708.20 Aligned_cols=527 Identities=20% Similarity=0.261 Sum_probs=426.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++.+|++++++ ++|++|.++||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (574)
T PRK09124 2 KQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHL 81 (574)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHH
Confidence 4689999999999999999999999999999999976 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|+|++|.+..+++++|++||.++|+++|||+.++.+++++++.+++|++.|.+ ++|||||+||
T Consensus 82 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~-~~gPV~l~iP 160 (574)
T PRK09124 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAIL-NRGVAVVVLP 160 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 5699999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++..+++..... .. + ........++.+.+++++++|++||||+|
T Consensus 161 ~Dv~~~~~~~~~~~---~~-------~------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi 206 (574)
T PRK09124 161 GDVALKPAPERATP---HW-------Y------------------------HAPQPVVTPAEEELRKLAALLNGSSNITL 206 (574)
T ss_pred hhhhhCcccccccc---cc-------c------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCCEE
Confidence 99988876532100 00 0 00111223567889999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
|+|.++. ++.+++++|+|++|+||++|+++||.+|++||+++|. ....++++||+||.+|+++.+. .+
T Consensus 207 i~G~g~~--~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~---~~ 281 (574)
T PRK09124 207 LCGSGCA--GAHDELVALAETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYR---QF 281 (574)
T ss_pred EECcChH--hHHHHHHHHHHHhCCceEEcccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCcc---cc
Confidence 9999874 5678999999999999999999999999999999873 3456788999999999987642 12
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
+.++.++||||.|+..+++.+..++.|.+|++.+|++|.+.+.. .....|.+.+.+..+++++...+..
T Consensus 282 ---~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (574)
T PRK09124 282 ---YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLEE-------KTDRKFLDKALEHYRKARKGLDDLA- 350 (574)
T ss_pred ---cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhhc-------cCChHHHHHHHHHHHHHHHhhhhhh-
Confidence 23456899999999999999999999999999999999887752 1123576666544333332221110
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
. ......|+ + +..+++ .|.+.+|++.+++.|+|++..|
T Consensus 351 -----------------~------~~~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ivv~d~g~~~~~ 388 (574)
T PRK09124 351 -----------------V------PSDGGKPI-----H---PQYLAR-----------QISEFAADDAIFTCDVGTPTVW 388 (574)
T ss_pred -----------------c------ccCCCCcC-----C---HHHHHH-----------HHHhhcCCCcEEEEcCCHHHHH
Confidence 0 00112345 6 667888 9999999999999999887666
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. . -|.+. +
T Consensus 389 ~~~~~~~-----~----~~~~~---------------------------------------------~------------ 402 (574)
T PRK09124 389 AARYLKM-----N----GKRRL---------------------------------------------L------------ 402 (574)
T ss_pred HHHhccc-----C----CCCeE---------------------------------------------E------------
Confidence 5433221 0 00000 0
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+++-+|+| |+++++++ ||+++. |+++|+
T Consensus 403 --------------~~~~~G~m----------------------------G~~lpaAi--Ga~la~--------p~r~vv 430 (574)
T PRK09124 403 --------------GSFNHGSM----------------------------ANAMPQAL--GAQAAH--------PGRQVV 430 (574)
T ss_pred --------------ecCCcccc----------------------------cchHHHHH--HHHHhC--------CCCeEE
Confidence 12224445 99999988 999998 999999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+..
T Consensus 431 ---------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~ivV~NN~~-~g~i~~ 470 (574)
T PRK09124 431 ---------------------------------ALSGDGGF-SMLMGDFLSL-----VQLKLPVKIVVFNNSV-LGFVAM 470 (574)
T ss_pred ---------------------------------EEecCcHH-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cccHHH
Confidence 99999999 9999999999 9999999999999987 444322
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.. . ..+ . .......+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.++++++..
T Consensus 471 ~~--~--~~~-~---~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIev~i~~~~~~~ 536 (574)
T PRK09124 471 EM--K--AGG-Y---LTDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQRAFAH-DGPALVDVVTAKQELAM 536 (574)
T ss_pred HH--H--hcC-C---ccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEecCcccCC
Confidence 11 1 111 1 011122366899999999999999999999999999999986 89999999999888653
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=706.37 Aligned_cols=534 Identities=22% Similarity=0.337 Sum_probs=430.5
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||++|||+||+.+.++++++.+.+|++|.|+||++|+|||+||+|+||+|+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~ 80 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT 80 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 47899999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
||++|+.+++|||+|+|+.+..+.+.+++|++||.++|+++|||++++++++++++.+++|++.|+++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++++....+ .+... .+ ....+...++.+.+++++++|++||||+|++
T Consensus 161 v~~~~~~~~~~~-~~~~~----~~-------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~ 210 (586)
T PRK06276 161 VQEGELDLEKYP-IPAKI----DL-------------------------PGYKPTTFGHPLQIKKAAELIAEAERPVILA 210 (586)
T ss_pred HHhhhhcccccc-ccccc----cc-------------------------cCCCCCCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 988776532111 00000 00 0001112356788999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.++.++++.+++++|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++..+.++ .
T Consensus 211 G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~ 289 (586)
T PRK06276 211 GGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDI-S 289 (586)
T ss_pred CCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCccccCCc-c
Confidence 99998888899999999999999999999999999999999873 345788999999999999987654333 2
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
.+.++.++||||.|+..+++++..++.|.+|+..+|++|.+.+.... ......|.+.++...........
T Consensus 290 ~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~------ 359 (586)
T PRK06276 290 SFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKKE----IKNKSEWLERVKKLKKESIPRMD------ 359 (586)
T ss_pred ccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhhhhc----ccchHHHHHHHHHHHHhcccccc------
Confidence 34566789999999999998888999999999999999998775210 11234576555433322211100
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC-----cEEEEECCCCc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV-----ILVIVNNNGIY 734 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~-----d~ilv~d~G~~ 734 (1065)
....++ + +..+++ .|.+.||+ +++|+.|+|++
T Consensus 360 ------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~~~~~~iv~~d~G~~ 396 (586)
T PRK06276 360 ------------------------FDDKPI-----K---PQRVIK-----------ELMEVLREIDPSKNTIITTDVGQN 396 (586)
T ss_pred ------------------------CCCCCc-----C---HHHHHH-----------HHHHhccccCCCCCeEEEeCCcHH
Confidence 011235 6 667888 99999998 99999999875
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|...++.. ..| ..++
T Consensus 397 ~~~~~~~~~~-----------------------------------------------~~p-------~~~~--------- 413 (586)
T PRK06276 397 QMWMAHFFKT-----------------------------------------------SAP-------RSFI--------- 413 (586)
T ss_pred HHHHHHhccc-----------------------------------------------CCC-------CeEE---------
Confidence 5553322210 001 0111
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
++|-+|+| |+++|+++ |++++. |++
T Consensus 414 -----------------~~~~~gsm----------------------------G~~lpaai--Ga~la~--------p~~ 438 (586)
T PRK06276 414 -----------------SSGGLGTM----------------------------GFGFPAAI--GAKVAK--------PDA 438 (586)
T ss_pred -----------------cCCCcccc----------------------------ccchhHHH--hhhhhc--------CCC
Confidence 12335555 99999988 999998 899
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.
T Consensus 439 ~Vv---------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~~vV~NN~~-~g~ 478 (586)
T PRK06276 439 NVI---------------------------------AITGDGGF-LMNSQELATI-----AEYDIPVVICIFDNRT-LGM 478 (586)
T ss_pred cEE---------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-hHH
Confidence 999 99999999 9999999999 9999999999999987 332
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
.... ........ .......+.+||.++|++||+++++|+|.+||+++|+++++. ++|+||||.+++++
T Consensus 479 ~~~~--~~~~~~~~----~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~lIeV~i~~~~ 546 (586)
T PRK06276 479 VYQW--QNLYYGKR----QSEVHLGETPDFVKLAESYGVKADRVEKPDEIKEALKEAIKS-GEPYLLDIIIDPAE 546 (586)
T ss_pred HHHH--HHHHhCCC----cccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecccc
Confidence 2211 11111111 111223356999999999999999999999999999999976 89999999998765
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-75 Score=705.94 Aligned_cols=528 Identities=20% Similarity=0.317 Sum_probs=425.6
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC--CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++|++.|+++||++|||+||+.+.++++++.++ +|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 36899999999999999999999999999999653 6999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|+++|+.+++|||+|+|+.+....+.+.+|++||..+|+++|||+.++.+++++++.+++|++.|.+ ++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 679999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++++.....+.+.. ........++++.+++++++|++||||+|++
T Consensus 160 v~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~ 207 (575)
T TIGR02720 160 FGWQEIPDNDYYASSVS--------------------------------YQTPLLPAPDVEAVTRAVQTLKAAERPVIYY 207 (575)
T ss_pred hhhcccccccccccccc--------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 98777653221100000 0111234578889999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
|.+++ ++.++|.+|||++++||++|+++||.+|++||+++|. ...+.+++||+||.+|+++++... ..
T Consensus 208 G~g~~--~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~---~~ 282 (575)
T TIGR02720 208 GIGAR--KAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEV---SK 282 (575)
T ss_pred Ccchh--hHHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCcccc---cc
Confidence 99987 5678999999999999999999999999999999883 345678999999999999865322 11
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVI 659 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 659 (1065)
.+.+++.+||||.|+..+++++..++.|.+|+..+|++|.+.++.+ ....|...+....+++++..+..
T Consensus 283 ~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~---- 351 (575)
T TIGR02720 283 AFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEPR-------ESTPWWQANVANVKNWRAYLASL---- 351 (575)
T ss_pred ccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcccc-------CChHHHHHHHHHHHHHHHHhhhh----
Confidence 2334455699999999999999999999999999999999887621 12346555443333333322111
Q ss_pred hccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcccc
Q psy14416 660 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 739 (1065)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~~ 739 (1065)
.. ....|+ + +..+++ .|.+.+|+|.+++.|.|++..|..
T Consensus 352 ---------------~~-------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ii~~D~g~~~~~~~ 390 (575)
T TIGR02720 352 ---------------ED-------KTEGPL-----Q---AYQVYR-----------AINKIAEDDAIYSIDVGDININSN 390 (575)
T ss_pred ---------------hc-------cCCCCc-----C---HHHHHH-----------HHHHhCCCCcEEEeCCcHHHHHHH
Confidence 00 112245 6 777888 999999999999999997666644
Q ss_pred cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccce
Q psy14416 740 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 819 (1065)
Q Consensus 740 ~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 819 (1065)
+++.. ..| +.++
T Consensus 391 ~~~~~-----------------------------------------------~~~-------~~~~-------------- 402 (575)
T TIGR02720 391 RHLKM-----------------------------------------------TPK-------NKWI-------------- 402 (575)
T ss_pred HhCCc-----------------------------------------------CCC-------CeEE--------------
Confidence 33221 000 0011
Q ss_pred eeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEc
Q psy14416 820 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 899 (1065)
Q Consensus 820 ~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 899 (1065)
.+|.+|+| |+++|+++ ||+++. |+++||
T Consensus 403 ------------~~~~~gsm----------------------------G~glpaAi--Ga~la~--------p~r~Vv-- 430 (575)
T TIGR02720 403 ------------TSNLFATM----------------------------GVGVPGAI--AAKLNY--------PDRQVF-- 430 (575)
T ss_pred ------------cCCCcchh----------------------------hchHHHHH--HHHHhC--------CCCcEE--
Confidence 12335555 99999999 999998 999999
Q ss_pred cCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhh
Q psy14416 900 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEAT 979 (1065)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~ 979 (1065)
+++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.+...
T Consensus 431 -------------------------------~i~GDGsf-~m~~~eL~Ta-----vr~~lpi~~VV~NN~~-yg~i~~~- 471 (575)
T TIGR02720 431 -------------------------------NLAGDGAF-SMTMQDLLTQ-----VQYHLPVINIVFSNCT-YGFIKDE- 471 (575)
T ss_pred -------------------------------EEEcccHH-HhhHHHHHHH-----HHhCCCeEEEEEeCCc-cHHHHHH-
Confidence 99999999 9999999999 9999999999999988 5533322
Q ss_pred HhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHH--hcCCCCEEEEEEeCCCCCCCc
Q psy14416 980 YASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCL--QTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~--~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
+.. . .+. ......+++||.++|++||+++++|++.+||++++++++ +. ++|.||||.+++++-.++
T Consensus 472 ~~~-~-~~~-----~~~~~~~~~df~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~-~~p~liev~i~~~~~~~~ 539 (575)
T TIGR02720 472 QED-T-NQP-----LIGVDFNDADFAKIAEGVGAVGFRVNKIEQLPAVFEQAKAIKQ-GKPVLIDAKITGDRPLPV 539 (575)
T ss_pred HHH-h-CCC-----cccccCCCCCHHHHHHHCCCEEEEeCCHHHHHHHHHHHHhhCC-CCcEEEEEEeCCCCCCCC
Confidence 111 1 111 111123569999999999999999999999999999999 65 899999999999875553
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=704.86 Aligned_cols=551 Identities=19% Similarity=0.259 Sum_probs=430.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+++++++|++.|+++||++|||+||+.+.+|++++.+.+|++|.|+||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 5 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~ 84 (588)
T PRK07525 5 KMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFV 84 (588)
T ss_pred cccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHH
Confidence 47999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+|+++|+.+++|||+|+|+.+...++.+.+|++||.++|+++|||+.++++++++++.+++|++.|+++ +|||||+||.
T Consensus 85 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~iP~ 163 (588)
T PRK07525 85 TAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINIPR 163 (588)
T ss_pred HHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEcCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 6999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++..... + .......+++..+++++++|.+||||+|+
T Consensus 164 Dv~~~~~~~~~~~--~-----------------------------------~~~~~~~~~~~~i~~a~~~L~~A~rPvil 206 (588)
T PRK07525 164 DYFYGVIDVEIPQ--P-----------------------------------VRLERGAGGEQSLAEAAELLSEAKFPVIL 206 (588)
T ss_pred hHhhhhcccccCc--c-----------------------------------ccCCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 9998776532100 0 00112235678899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HHHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++.++++.++|++|+|++|+||++|+++||.+|++||+++| ....+.+++||+||.+|+++++..+..+.
T Consensus 207 ~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~ 286 (588)
T PRK07525 207 SGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQY 286 (588)
T ss_pred ECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhccccc
Confidence 99999888889999999999999999999999999999999988 24556789999999999999875442211
Q ss_pred --ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 579 --PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 579 --~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
..+.++.++||||.|+..+++++..++.|++|+..+|++|.+.+.... .....+.+|.+.+......+.....+.-
T Consensus 287 ~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (588)
T PRK07525 287 GIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLAERL--AGDAGREERKALIAAEKSAWEQELSSWD 364 (588)
T ss_pred ccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhhhhc--cccccchhhhhhhhhhHHHHHHHHHHHH
Confidence 124456899999999999999999999999999999999999885310 0111122233222211111111111000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
. ........-.++.+ .....++ + +..++. .|.+.+|+|.+++.|.|++..
T Consensus 365 ~--~~~~~~~~~~~~~~---------~~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ivv~d~G~~~~ 414 (588)
T PRK07525 365 H--EDDDPGTDWNEEAR---------ARKPDYM-----H---PRQALR-----------EIQKALPEDAIVSTDIGNNCS 414 (588)
T ss_pred h--cccccccccccccc---------ccCCCCc-----C---HHHHHH-----------HHHHhCCCCcEEEECCcccHH
Confidence 0 00000000000000 0012246 7 778888 999999999999999998777
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. ..| +.++
T Consensus 415 ~~~~~~~~-----------------------------------------------~~p-------~~~~----------- 429 (588)
T PRK07525 415 IANSYLRF-----------------------------------------------EKG-------RKYL----------- 429 (588)
T ss_pred HHHHhccc-----------------------------------------------CCC-------CeEE-----------
Confidence 75543321 001 0111
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
+++-+|+| |+++|+++ |++++. |+++|
T Consensus 430 ---------------~~~~~g~m----------------------------G~glp~ai--Ga~la~--------p~r~v 456 (588)
T PRK07525 430 ---------------APGSFGNC----------------------------GYAFPAII--GAKIAC--------PDRPV 456 (588)
T ss_pred ---------------cccccccc----------------------------ccHHHHHH--HHHHhC--------CCCcE
Confidence 12224455 99999998 999998 99999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++++|+ +++++|+++||+||+| |+...
T Consensus 457 v---------------------------------~i~GDG~f-~~~~~el~Ta-----~~~~lpv~ivV~NN~~-y~~~~ 496 (588)
T PRK07525 457 V---------------------------------GFAGDGAW-GISMNEVMTA-----VRHNWPVTAVVFRNYQ-WGAEK 496 (588)
T ss_pred E---------------------------------EEEcCchH-hccHHHHHHH-----HHhCCCeEEEEEeCch-hHHHH
Confidence 9 99999999 9999999999 9999999999999987 44322
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhc--CCCCEEEEEEeCCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT--TTRPSLINILINPSAD 1050 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~--~~~~~li~~~~~~~~~ 1050 (1065)
... ... ..+. .......+.+||.++|++||+++++|++.+||+++|+++++. .++|+||||.++++..
T Consensus 497 ~~~-~~~-~~~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 497 KNQ-VDF-YNNR----FVGTELDNNVSYAGIAEAMGAEGVVVDTQEELGPALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHH-HHH-hCCC----cccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEEEEeccccC
Confidence 211 111 1111 111233456999999999999999999999999999999975 2589999999997764
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=701.99 Aligned_cols=533 Identities=21% Similarity=0.260 Sum_probs=428.9
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++.+++++++++ +|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~ 81 (578)
T PRK06546 2 AKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHL 81 (578)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHH
Confidence 36899999999999999999999999999999999775 79999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++|+++|+.+++|||+|+|+.|....+++++|++||.++|+++|||++++++++++++.+++|++.|.+ +||||||+||
T Consensus 82 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~lP 160 (578)
T PRK06546 82 INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGVSVVTLP 160 (578)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 6799999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++..... .. + ........++++.+++++++|++||||+|
T Consensus 161 ~Dv~~~~~~~~~~~---~~------~-------------------------~~~~~~~~~~~~~i~~a~~~L~~A~rPvi 206 (578)
T PRK06546 161 GDIADEPAPEGFAP---SV------I-------------------------SPRRPTVVPDPAEVRALADAINEAKKVTL 206 (578)
T ss_pred hhhhhccccccccc---cc------c-------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCcEE
Confidence 99988776532110 00 0 01111234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
++|.++. ++.+++++|+|++|+||++++++||.+|++||+++|. ..+.++++|||||.+|+++++. .|
T Consensus 207 i~G~g~~--~a~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~---~~ 281 (578)
T PRK06546 207 FAGAGVR--GAHAEVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPYD---QF 281 (578)
T ss_pred EECcchH--HHHHHHHHHHHHhCcceEECcccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCChh---hc
Confidence 9999986 5678999999999999999999999999999999872 4567889999999999987642 12
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
.++.++||||.|+..+++++..++.|.+|+..+|++|.+.+... ....|.+.+++..+.+.....+..
T Consensus 282 ----~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~~~-------~~~~~~~~~~~~~~~~~~~~~~~~- 349 (578)
T PRK06546 282 ----LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKEK-------TDRRFLDRMLKKHARKLEKVVGAY- 349 (578)
T ss_pred ----CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhccc-------CChHHHHHHHHHHHHHHhhhhhhh-
Confidence 34467999999999999988899999999999999999988621 124576655443332221111000
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
.. ......|+ + +..+++ .|.+.+|++.+++.|.|++..|
T Consensus 350 -----------------~~-----~~~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~~~~ 388 (578)
T PRK06546 350 -----------------TR-----KVEKHTPI-----H---PEYVAS-----------ILDELAADDAVFTVDTGMCNVW 388 (578)
T ss_pred -----------------cc-----ccCCCCCc-----C---HHHHHH-----------HHHHhccCCcEEEECCcHHHHH
Confidence 00 00112345 6 667888 9999999999999999986666
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
...++.. . .+ +.++
T Consensus 389 ~~~~~~~------~-----------------------------------------~~-------~~~~------------ 402 (578)
T PRK06546 389 AARYITP------N-----------------------------------------GR-------RRVI------------ 402 (578)
T ss_pred HHHhcCC------C-----------------------------------------CC-------ceEE------------
Confidence 4432210 0 00 0000
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+++-+|+| |+++++++ ||+++. |+++||
T Consensus 403 --------------~s~~~gsm----------------------------G~~~paAi--Ga~la~--------p~~~vv 430 (578)
T PRK06546 403 --------------GSFRHGSM----------------------------ANALPHAI--GAQLAD--------PGRQVI 430 (578)
T ss_pred --------------ccCCcccc----------------------------cchhHHHH--HHHHhC--------CCCcEE
Confidence 12224444 99999988 999998 999999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||+| |+.+..
T Consensus 431 ---------------------------------~i~GDGsf-~~~~~el~Ta-----~~~~lpv~~vV~NN~~-~g~i~~ 470 (578)
T PRK06546 431 ---------------------------------SMSGDGGL-SMLLGELLTV-----KLYDLPVKVVVFNNST-LGMVKL 470 (578)
T ss_pred ---------------------------------EEEcCchH-hhhHHHHHHH-----HHhCCCeEEEEEECCc-cccHHH
Confidence 99999999 9999999999 9999999999999987 554432
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhh
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFS 1057 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 1057 (1065)
... . .+. .......+++||.++|++||+++.+|++.+||+++++++++. ++|+||||.+++++...+ -+.
T Consensus 471 ~q~---~-~~~----~~~~~~~~~~df~~lA~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIev~~~~~~~~~~-~~~ 540 (578)
T PRK06546 471 EML---V-DGL----PDFGTDHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFAH-PGPALVDVVTDPNALSIP-PTI 540 (578)
T ss_pred HHH---h-cCC----CcccccCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcccCC-Ccc
Confidence 211 1 111 111223467999999999999999999999999999999986 999999999998875433 244
Q ss_pred hh
Q psy14416 1058 WL 1059 (1065)
Q Consensus 1058 ~~ 1059 (1065)
|.
T Consensus 541 ~~ 542 (578)
T PRK06546 541 TG 542 (578)
T ss_pred cH
Confidence 44
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-74 Score=696.45 Aligned_cols=520 Identities=23% Similarity=0.311 Sum_probs=415.4
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 347 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a 347 (1065)
+++++|++.|+++||+++||+||+.++++++++.+++|++|.|+||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 3 ~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~g 82 (535)
T PRK07524 3 TCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATA 82 (535)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHH
Confidence 78999999999999999999999999999999987799999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeecCCCccCCCCCC--CCCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 348 MANAQINCWPMLVIGGSCAQDHEGIG--GFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 348 v~eA~~~~vPLlvItg~~p~~~~g~g--a~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
|++|+.+++|||+|+|+.+.+..+++ .+|+ +||.++|+++|||+.++.+++++++.+++|++.|+++|+|||||+||
T Consensus 83 i~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 83 MGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred HHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 99999999999999999998877753 6676 59999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++..... + ........++++.+++++++|++||||+|
T Consensus 163 ~Dv~~~~~~~~~~~--~----------------------------------~~~~~~~~~~~~~i~~~~~~L~~AkrPvi 206 (535)
T PRK07524 163 LDVLAAPADHLLPA--P----------------------------------PTRPARPGPAPAALAQAAERLAAARRPLI 206 (535)
T ss_pred HhHHhcccccccCc--c----------------------------------cccCCCCCCCHHHHHHHHHHHHhCCCcEE
Confidence 99998887532110 0 00111234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-----HHHhhhcCCCEEEEeCCccccccccC-CC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-----ARTHALQNADLVLLLGARLNWILHFG-RA 578 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-----~~~~al~~aDlVI~iG~~~~~~~~~g-~~ 578 (1065)
++|.++. ++.++|.+|||++++||++|+++||.+|++||+++|. ...++++++|+||.+|+++....... +.
T Consensus 207 l~G~g~~--~a~~~l~~lae~l~~pV~tt~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~ 284 (535)
T PRK07524 207 LAGGGAL--AAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFD 284 (535)
T ss_pred EECCChH--HHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCCCcCccccccccc
Confidence 9999986 5678999999999999999999999999999999973 45677899999999999986543211 22
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
..+.++.++||||.|+..+++.+..++.|.+|++.+|++|.+.++.+ .....|.....+ ++++...+..
T Consensus 285 ~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~------~~~~~~~~~~~~---~~~~~~~~~~-- 353 (535)
T PRK07524 285 GGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPGQ------AAAADWGAARVA---ALRQALRAEW-- 353 (535)
T ss_pred cccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhcccc------CCchhhHHHHHH---HHHHhchhhc--
Confidence 23455678999999999999998999999999999999999987631 112346432111 1111111110
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
. ..+. . +..+++ .|.+.+| +.+++.|.|++..|.
T Consensus 354 -------------------------~-~~~~-----~---~~~~~~-----------~l~~~l~-~~~i~~d~g~~~~~~ 387 (535)
T PRK07524 354 -------------------------D-PLTA-----A---QVALLD-----------TILAALP-DAIFVGDSTQPVYAG 387 (535)
T ss_pred -------------------------c-cccc-----C---HHHHHH-----------HHHHhCC-CCEEEeCCcHHHHHH
Confidence 0 0112 3 445778 8999998 577888887654443
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
.+++.. ..| +.+
T Consensus 388 ~~~~~~-----------------------------------------------~~p-------~~~-------------- 399 (535)
T PRK07524 388 NLYFDA-----------------------------------------------DAP-------RRW-------------- 399 (535)
T ss_pred HHhccc-----------------------------------------------CCC-------Cce--------------
Confidence 322110 001 011
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
+++++-+|+| |+++++++ ||+++. |+++||
T Consensus 400 -----------~~~~~~~g~m----------------------------G~~lp~ai--Ga~lA~--------p~~~vv- 429 (535)
T PRK07524 400 -----------FNASTGYGTL----------------------------GYGLPAAI--GAALGA--------PERPVV- 429 (535)
T ss_pred -----------EeCCCCcccc----------------------------cchHHHHH--HHHHhC--------CCCcEE-
Confidence 1112335555 99999888 999998 999999
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||++ |+.+...
T Consensus 430 --------------------------------~i~GDG~f-~~~~~el~ta-----~~~~lpi~~vV~NN~~-~g~i~~~ 470 (535)
T PRK07524 430 --------------------------------CLVGDGGL-QFTLPELASA-----VEADLPLIVLLWNNDG-YGEIRRY 470 (535)
T ss_pred --------------------------------EEEcchHH-hhhHHHHHHH-----HHhCCCeEEEEEECCc-hHHHHHH
Confidence 99999999 9999999999 9999999999999987 4322221
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
. ... +. .+.....+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++-
T Consensus 471 ~--~~~--~~----~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~~~~~ 531 (535)
T PRK07524 471 M--VAR--DI----EPVGVDPYTPDFIALARAFGCAAERVADLEQLQAALRAAFAR-PGPTLIEVDQACW 531 (535)
T ss_pred H--HHh--cC----CccccCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEEECCcc
Confidence 1 100 11 122233467999999999999999999999999999999986 9999999999863
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-74 Score=694.50 Aligned_cols=525 Identities=24% Similarity=0.320 Sum_probs=422.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC--CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
+.++++++|++.|+++||+++||+||+++.+|++++.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~ 81 (542)
T PRK08266 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVL 81 (542)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHH
Confidence 357999999999999999999999999999999999653 799999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCC--CCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEE
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga--~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV 419 (1065)
|+++|+++|+.+++|||+|+|+++....+++. +|+ +||.++|+++|||+.++.+++++++.+++|++.|+++++|||
T Consensus 82 N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV 161 (542)
T PRK08266 82 NAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPV 161 (542)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcE
Confidence 99999999999999999999999988877654 566 599999999999999999999999999999999999999999
Q ss_pred EEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhC
Q psy14416 420 YLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499 (1065)
Q Consensus 420 ~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~A 499 (1065)
||+||.|++.++++..... . ........++.+.+++++++|++|
T Consensus 162 ~l~iP~dv~~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~i~~~~~~L~~A 205 (542)
T PRK08266 162 ALEMPWDVFGQRAPVAAAP---P---------------------------------LRPAPPPAPDPDAIAAAAALIAAA 205 (542)
T ss_pred EEEeCHhHhhCcccccccc---c---------------------------------ccCCCCCCCCHHHHHHHHHHHHhC
Confidence 9999999988776432110 0 001123356788899999999999
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 500 krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
|||+|++|.++. ++.++|.+|+|++|+||++|+++||.++++||+++|. ....++++||+||.+|+++.+. ...|.
T Consensus 206 krPvIv~G~g~~--~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~-~~~~~ 282 (542)
T PRK08266 206 KNPMIFVGGGAA--GAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELP-TFRWP 282 (542)
T ss_pred CCCEEEECCChh--hHHHHHHHHHHHHCCCEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcc-ccccc
Confidence 999999999864 6788999999999999999999999999999999985 3456788999999999999876 44443
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
. +.++.++||||.|+..+++ +..++.|.+|++.+|++|.+.+++.. .....|...+...+..+.....
T Consensus 283 ~-~~~~~~~i~id~d~~~~~~-~~~~~~i~~D~~~~l~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~----- 350 (542)
T PRK08266 283 W-RPDGLKVIRIDIDPTEMRR-LKPDVAIVADAKAGTAALLDALSKAG-----SKRPSRRAELRELKAAARQRIQ----- 350 (542)
T ss_pred c-cCCCCcEEEEECCHHHhCC-cCCCceEecCHHHHHHHHHHhhhhcc-----cCchHHHHHHHHHHHhhhhccc-----
Confidence 2 3445789999999999998 88899999999999999998876210 1224566655443322111100
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeeccccccc-ccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY-GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
++ + +. .+++ .|.+.+|++.+++.|+|++..|
T Consensus 351 -----------------------------~~-----~---~~~~~~~-----------~l~~~lp~d~ivv~d~g~~~~~ 382 (542)
T PRK08266 351 -----------------------------AV-----Q---PQASYLR-----------AIREALPDDGIFVDELSQVGFA 382 (542)
T ss_pred -----------------------------cC-----C---HHHHHHH-----------HHHHhcCCCcEEEeCCcHHHHH
Confidence 11 2 22 3577 8999999999999998765444
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. ..| ++ +
T Consensus 383 ~~~~~~~-----------------------------------------------~~~----~~---~------------- 395 (542)
T PRK08266 383 SWFAFPV-----------------------------------------------YAP----RT---F------------- 395 (542)
T ss_pred HHHhccc-----------------------------------------------CCC----Cc---E-------------
Confidence 3321110 000 00 0
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
-++|.+|+| |+++++++ |++++. |+++|+
T Consensus 396 -------------~~~~~~Gsm----------------------------G~~lp~ai--Ga~la~--------p~~~vv 424 (542)
T PRK08266 396 -------------VTCGYQGTL----------------------------GYGFPTAL--GAKVAN--------PDRPVV 424 (542)
T ss_pred -------------EeCCCCccc----------------------------ccHHHHHH--HHHHhC--------CCCcEE
Confidence 023445555 99999988 999998 999999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++|+ +++++|+++||+||+| |+....
T Consensus 425 ---------------------------------~v~GDG~f-~~~~~eL~ta-----~~~~lpv~ivv~NN~~-y~~~~~ 464 (542)
T PRK08266 425 ---------------------------------SITGDGGF-MFGVQELATA-----VQHNIGVVTVVFNNNA-YGNVRR 464 (542)
T ss_pred ---------------------------------EEEcchhh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-chHHHH
Confidence 99999999 9999999999 9999999999999988 442221
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcc
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQ 1054 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 1054 (1065)
. ... ...+.. .....+.+||.++|++||+++++|++.+||+++++++++. ++|+||||.|++++..+++
T Consensus 465 ~-~~~-~~~~~~-----~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~i~~~~~~~~~ 533 (542)
T PRK08266 465 D-QKR-RFGGRV-----VASDLVNPDFVKLAESFGVAAFRVDSPEELRAALEAALAH-GGPVLIEVPVPRGSEASPW 533 (542)
T ss_pred H-HHH-hcCCCc-----ccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCcEEEEEEecCCCCcccc
Confidence 1 111 111111 1122246899999999999999999999999999999976 8999999999998887653
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=696.30 Aligned_cols=545 Identities=23% Similarity=0.278 Sum_probs=426.4
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+..++++++|++.|+++||+++||+|+... +.+++.+++|++|.||||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 11 ~~~~~~a~~i~~~L~~~GV~~vFG~~~~~~--~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 88 (578)
T PRK06112 11 TLNGTVAHAIARALKRHGVEQIFGQSLPSA--LFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATL 88 (578)
T ss_pred ccCcCHHHHHHHHHHHCCCCEEeecccchH--hHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHH
Confidence 357899999999999999999999985532 345566678999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++.+++++++.+++|++.|+++++|||||+|
T Consensus 89 ~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 168 (578)
T PRK06112 89 LVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLL 168 (578)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++++.+... .+... .........+++..+++++++|++||||+
T Consensus 169 P~Dv~~~~~~~~~~~-~~~~~------------------------------~~~~~~~~~~~~~~i~~~~~~L~~AkrPv 217 (578)
T PRK06112 169 PADLLTAAAAAPAAP-RSNSL------------------------------GHFPLDRTVPAPQRLAEAASLLAQAQRPV 217 (578)
T ss_pred CHhHhhCccccccCc-ccccc------------------------------cCCCCCCCCCCHHHHHHHHHHHHcCCCcE
Confidence 999998876532111 00000 00111123467888999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH------------HHHhhhcCCCEEEEeCCcccc
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA------------ARTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~------------~~~~al~~aDlVI~iG~~~~~ 571 (1065)
|++|.++.++++.+++.+|+|++|+||++|+++||.+|++||+++|. ...+++++||+||.+|+++++
T Consensus 218 il~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~ 297 (578)
T PRK06112 218 VVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQ 297 (578)
T ss_pred EEECCCccccchHHHHHHHHHHhCCCEEEcccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCc
Confidence 99999998888889999999999999999999999999999998873 345678899999999999988
Q ss_pred ccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhc
Q psy14416 572 ILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQV 651 (1065)
Q Consensus 572 ~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 651 (1065)
+.+.+|. .+.++.++||||.|+..+++.+. ++.|++|+..+|++|.+.+...........+..|...+.+..+...+.
T Consensus 298 ~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~-~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (578)
T PRK06112 298 NGTDSWS-LYPEQAQYIHIDVDGEEVGRNYE-ALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHRED 375 (578)
T ss_pred ccccccc-ccCCCCeEEEEECChHHhCcccc-ceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhh
Confidence 7665553 24456789999999999888776 799999999999999987753211111112344554444332222111
Q ss_pred ccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECC
Q psy14416 652 KLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNN 731 (1065)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~ 731 (1065)
..+. .. ....++ + +..+++ .|.+.+|++++++.|+
T Consensus 376 ~~~~-------------------~~-------~~~~~i-----~---~~~v~~-----------~l~~~l~~~~ivv~d~ 410 (578)
T PRK06112 376 SAPV-------------------AL-------SDASPI-----R---PERIMA-----------ELQAVLTGDTIVVADA 410 (578)
T ss_pred hhhh-------------------hc-------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEEEcc
Confidence 1111 00 112245 6 777888 9999999999999999
Q ss_pred CCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccc
Q psy14416 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 811 (1065)
Q Consensus 732 G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 811 (1065)
|++..|...++.. ..| + ..+
T Consensus 411 g~~~~~~~~~~~~-----------------------------------------------~~~-----~-~~~------- 430 (578)
T PRK06112 411 SYSSIWVANFLTA-----------------------------------------------RRA-----G-MRF------- 430 (578)
T ss_pred cHHHHHHHHhcCc-----------------------------------------------cCC-----C-ceE-------
Confidence 8765553322210 000 0 000
Q ss_pred ccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccc
Q psy14416 812 SIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL 891 (1065)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 891 (1065)
+ +++-+|+| |+++++++ |++++.
T Consensus 431 ------------------~-~~~g~gsm----------------------------G~~l~~ai--Ga~la~-------- 453 (578)
T PRK06112 431 ------------------L-TPRGLAGL----------------------------GWGVPMAI--GAKVAR-------- 453 (578)
T ss_pred ------------------E-CCCCcccc----------------------------ccHHHHHH--HHHhhC--------
Confidence 0 01113444 88888888 999998
Q ss_pred ccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcc
Q psy14416 892 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 971 (1065)
Q Consensus 892 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~ 971 (1065)
|+++|| +++|||+| +|+.++++|+ +++++|+++||+||++
T Consensus 454 ~~~~vv---------------------------------~i~GDGsf-~~~~~el~ta-----~~~~l~~~~vv~NN~~- 493 (578)
T PRK06112 454 PGAPVI---------------------------------CLVGDGGF-AHVWAELETA-----RRMGVPVTIVVLNNGI- 493 (578)
T ss_pred CCCcEE---------------------------------EEEcchHH-HhHHHHHHHH-----HHhCCCeEEEEEeCCc-
Confidence 899999 99999999 9999999999 9999999999999975
Q ss_pred cCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 972 YGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
|+...... .... +. .......+++||.++|++||+++++|++.+||+++|+++++. ++|+||||++++++..
T Consensus 494 ~g~~~~~~--~~~~-~~----~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIev~~~~~~~p 565 (578)
T PRK06112 494 LGFQKHAE--TVKF-GT----HTDACHFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMAA-PGPTLIEVITDPSAFP 565 (578)
T ss_pred cCCEEecc--cccc-CC----ccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEcCcccCC
Confidence 55433211 0000 10 011222357999999999999999999999999999999986 8999999999988776
Q ss_pred Cc
Q psy14416 1052 KP 1053 (1065)
Q Consensus 1052 ~~ 1053 (1065)
+.
T Consensus 566 ~~ 567 (578)
T PRK06112 566 PI 567 (578)
T ss_pred Cc
Confidence 43
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-73 Score=691.09 Aligned_cols=532 Identities=21% Similarity=0.313 Sum_probs=425.4
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHh--CCCeEEEEeccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT--KKPGVCLVVSGPGL 341 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~t--gkpgv~~~tsGpG~ 341 (1065)
+..++++++|++.|+++||+++||+|| .++++++.+.+|++|.||||++|+|||+||+|+| |+|+||++|+|||+
T Consensus 17 ~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~ 93 (565)
T PRK06154 17 AKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGA 93 (565)
T ss_pred cCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCccH
Confidence 456799999999999999999999995 4889999878899999999999999999999999 49999999999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+|+++||++|+.+++|||+|+|+.+....+.+ +.+||.++|+++|||+.++.+++++++.+++|++.|+++|+|||||
T Consensus 94 ~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l 171 (565)
T PRK06154 94 ENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVL 171 (565)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999999999999999998765544 3578999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++.++++..... .. ........++.+.+++++++|.+|||
T Consensus 172 ~iP~Dv~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~i~~aa~~L~~A~r 216 (565)
T PRK06154 172 ELPVDVLAEELDELPLD---HR--------------------------------PSRRSRPGADPVEVVEAAALLLAAER 216 (565)
T ss_pred ecchHHhhhhccccccc---cc--------------------------------CCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999988776421110 00 00112235678899999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
|+|++|.++.++++.+++++|||++|+||++|+++||.+|++||+++|. ..++++++||+||.+|++++...
T Consensus 217 Pvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~~- 295 (565)
T PRK06154 217 PVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSY- 295 (565)
T ss_pred CEEEECCCccccChHHHHHHHHHHhCCCEEECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCcccc-
Confidence 9999999999888899999999999999999999999999999999872 34577899999999999998642
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.++ .++++.++||||.|+..+++++..++.|.+|+..+|++|.+.+..+... ......+|.+.+...++.+++...+
T Consensus 296 ~~~--~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (565)
T PRK06154 296 YGL--PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGP-DRGRAQQVAAEIEAVRAAWLAKWMP 372 (565)
T ss_pred cCc--cCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhhcccc-cccchHHHHHHHHHHHHHhHHhhhh
Confidence 222 2556789999999999999999999999999999999999987632100 0011346766655444333222111
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC-CcEEEEECCCC
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGI 733 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP-~d~ilv~d~G~ 733 (1065)
.. . ....|+ + +..+++ .|++.+| +|.+++.|.|+
T Consensus 373 ~~------------------~--------~~~~~l-----~---p~~~~~-----------~l~~~l~~~d~iv~~D~G~ 407 (565)
T PRK06154 373 KL------------------T--------SDSTPI-----N---PYRVVW-----------ELQHAVDIKTVIITHDAGS 407 (565)
T ss_pred hc------------------c--------CCCCCc-----C---HHHHHH-----------HHHHhcCCCCEEEEECCcc
Confidence 10 0 112356 7 778888 9999997 58999999998
Q ss_pred cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccc
Q psy14416 734 YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASI 813 (1065)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 813 (1065)
+..|..+++.. ..| +.++.
T Consensus 408 ~~~~~~~~~~~-----------------------------------------------~~p-------~~~~~------- 426 (565)
T PRK06154 408 PRDQLSPFYVA-----------------------------------------------SRP-------GSYLG------- 426 (565)
T ss_pred cHHHHHHhCCC-----------------------------------------------CCC-------CeEEc-------
Confidence 77765433321 001 01111
Q ss_pred ccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccccc
Q psy14416 814 VESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 893 (1065)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 893 (1065)
+|-+|+| |+++|+++ ||+++. |+
T Consensus 427 -------------------~~~~gsm----------------------------G~glpaai--Ga~la~--------p~ 449 (565)
T PRK06154 427 -------------------WGKTTQL----------------------------GYGLGLAM--GAKLAR--------PD 449 (565)
T ss_pred -------------------cCCCccc----------------------------ccHHHHHH--HHHHhC--------CC
Confidence 1224444 99999999 999998 99
Q ss_pred EEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccC
Q psy14416 894 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 973 (1065)
Q Consensus 894 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~ 973 (1065)
++|| +++|||+| +|+.+||+|+ +|+++|+++||+||++ |+
T Consensus 450 r~Vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpi~~vV~NN~~-yg 489 (565)
T PRK06154 450 ALVI---------------------------------NLWGDAAF-GMTGMDFETA-----VRERIPILTILLNNFS-MG 489 (565)
T ss_pred CcEE---------------------------------EEEcchHH-hccHHHHHHH-----HHhCCCeEEEEEECCc-cc
Confidence 9999 99999999 9999999999 9999999999999987 55
Q ss_pred CCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHh--cCCCCEEEEEEeCCCCCC
Q psy14416 974 GFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQ--TTTRPSLINILINPSADR 1051 (1065)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~~~li~~~~~~~~~~ 1051 (1065)
.+.... .. . +. .......++||.++|++||+++++|++.+||+++|+++++ ..++|+||||.++++...
T Consensus 490 ~~~~~~-~~-~--~~-----~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~v~~~~~~ 560 (565)
T PRK06154 490 GYDKVM-PV-S--TT-----KYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVKEGTPALLEVITSEETAL 560 (565)
T ss_pred eeehhh-hh-h--cC-----cccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEEeChHHhc
Confidence 443321 10 0 10 1111112479999999999999999999999999999996 238899999999887654
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=692.38 Aligned_cols=517 Identities=19% Similarity=0.252 Sum_probs=416.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++.++++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 3689999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCC--CCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga--~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
++||++|+.+++|||+|+|+.+..+.+++. +|+ +||.++|+++|||++++++++++++.+++|++.|+++++|||||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSV 161 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 999999999999999999999988777664 455 69999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++.++++.+... . ........++++.+++++++|.+|||
T Consensus 162 ~iP~dv~~~~~~~~~~~---~---------------------------------~~~~~~~~~~~~~i~~~~~~l~~Akr 205 (544)
T PRK07064 162 EIPIDIQAAEIELPDDL---A---------------------------------PVHVAVPEPDAAAVAELAERLAAARR 205 (544)
T ss_pred EeCHhHhhccccccccc---c---------------------------------cccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999988776432100 0 00112234678899999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-----HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-----ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-----~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|+|++|.++. ++.++|.+|+| +++||++|+++||.+|++||+++|. ....++++|||||.+|+++++..+..
T Consensus 206 Pvi~~G~g~~--~a~~~l~~lae-~~~pv~~t~~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~ 282 (544)
T PRK07064 206 PLLWLGGGAR--HAGAEVKRLVD-LGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSRLRGNETLK 282 (544)
T ss_pred CEEEECCChH--hHHHHHHHHHH-cCCCEEEccCccccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCCCCcccccc
Confidence 9999999886 55688999999 9999999999999999999999983 45677889999999999998876655
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
|. +..+.++||||.|+..+++.++.+..+.+|++++|++|.+.++... .....|.+.+.....+..+...
T Consensus 283 ~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~--- 352 (544)
T PRK07064 283 YS--LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEGRL-----SVDPAFAADLRAAREAAVADLR--- 352 (544)
T ss_pred cc--cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhhhcc-----ccchHHHHHHHHHHHhhhhhcc---
Confidence 53 2234589999999999999999999999999999999998775210 1234677666554433222110
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccc-cccccccccccccchhhhhhcCCCcEEEEECCCCc-
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI-YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY- 734 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~-~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~- 734 (1065)
.++ . + ..+++ .|.+.+|++++++.|.|..
T Consensus 353 ------------------------------~~~-----~---~~~~~~~-----------~l~~~l~~~~ii~~d~~~~~ 383 (544)
T PRK07064 353 ------------------------------KGL-----G---PYAKLVD-----------ALRAALPRDGNWVRDVTISN 383 (544)
T ss_pred ------------------------------ccc-----C---cHHHHHH-----------HHHHhCCCCCEEEeCCccch
Confidence 012 2 2 24677 9999999999999998642
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|...++.. ..| +. +
T Consensus 384 ~~~~~~~~~~-----------------------------------------------~~p----~~---~---------- 399 (544)
T PRK07064 384 STWGNRLLPI-----------------------------------------------FEP----RA---N---------- 399 (544)
T ss_pred HHHHHHhcCc-----------------------------------------------cCC----Cc---e----------
Confidence 2232211110 000 00 0
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
+ ..+| | +||+++++++ ||+++. |++
T Consensus 400 --------------~-~~~~--g----------------------------~mG~~lpaAi--Ga~lA~--------p~~ 424 (544)
T PRK07064 400 --------------V-HALG--G----------------------------GIGQGLAMAI--GAALAG--------PGR 424 (544)
T ss_pred --------------e-ccCC--C----------------------------ccccccchhh--hhhhhC--------cCC
Confidence 0 0011 3 3499999998 999998 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++|+|+ +|+++|+++||+||+| |+.
T Consensus 425 ~vv---------------------------------~i~GDGsf-~m~~~eL~Ta-----~~~~lpv~ivV~NN~~-yg~ 464 (544)
T PRK07064 425 KTV---------------------------------GLVGDGGL-MLNLGELATA-----VQENANMVIVLMNDGG-YGV 464 (544)
T ss_pred cEE---------------------------------EEEcchHh-hhhHHHHHHH-----HHhCCCeEEEEEeCCh-hHH
Confidence 999 99999999 9999999999 9999999999999988 443
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
+.... .....+ ...+...+++||.++|++||+++++|+|.+||+++++++++. ++|+||||.+++
T Consensus 465 ~~~~~--~~~~~~-----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~-~~p~lIeV~~~~ 529 (544)
T PRK07064 465 IRNIQ--DAQYGG-----RRYYVELHTPDFALLAASLGLPHWRVTSADDFEAVLREALAK-EGPVLVEVDMLS 529 (544)
T ss_pred HHHHH--HHhcCC-----ccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcC-CCCEEEEEEccc
Confidence 32211 111011 122344567999999999999999999999999999999986 899999999974
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=684.58 Aligned_cols=538 Identities=21% Similarity=0.273 Sum_probs=416.4
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC------CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE------GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~------~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
.++++++|++.|+++||+++||+||..+.++++++.+. +|++|.||||++|+|||+||+|+||||+||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 46899999999999999999999999999999999642 399999999999999999999999999999999999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCC--------CCCCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHH
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--------GGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL 410 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~--------ga~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~ 410 (1065)
|++|+++||++|+.+++|||+|+|+.+....++ +.+|+ +||..+|+++|||+.++.+++++.+.+++|++.
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~ 165 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQI 165 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776543 46899 699999999999999999999999999999999
Q ss_pred hhcCCCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHH
Q psy14416 411 STFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELK 490 (1065)
Q Consensus 411 A~~~~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~ 490 (1065)
|.++|||||||+||.|++.++++.....+ + . ........++++.++
T Consensus 166 a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~-~-~--------------------------------~~~~~~~~~~~~~~~ 211 (569)
T PRK08327 166 AMSEPKGPVYLTLPREVLAEEVPEVKADA-G-R--------------------------------QMAPAPPAPDPEDIA 211 (569)
T ss_pred HhcCCCCCEEEECcHHHHhhhccccccCc-c-c--------------------------------cCCCCCCCCCHHHHH
Confidence 99999999999999999988875321110 0 0 011123356788999
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccc
Q psy14416 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLN 570 (1065)
Q Consensus 491 ~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~ 570 (1065)
+++++|++||||+|++|.++.++++.+++.+|||++++||++|+++||.+|++||+++|...+++++++||||.+|+++.
T Consensus 212 ~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~ 291 (569)
T PRK08327 212 RAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVP 291 (569)
T ss_pred HHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEEEeCCCCC
Confidence 99999999999999999999988889999999999999999999999999999999999877788899999999999987
Q ss_pred cccccCCCccccCCCeEEEecCChhhcc---cccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHh
Q psy14416 571 WILHFGRAPRFKSNVKIIQVDLNAEELH---NSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 647 (1065)
Q Consensus 571 ~~~~~g~~~~~~~~~~iI~Vd~d~~~~~---~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~ 647 (1065)
+.....+ +.++.++||||.|+..++ ++++.++.|++|+..+|++|.+.++....... .....|.+.|.+...+
T Consensus 292 ~~~~~~~---~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 367 (569)
T PRK08327 292 WIPKKIR---PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAER-RRARRRRAAVRELRIR 367 (569)
T ss_pred Ccccccc---CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchh-hhhhhhHHHHHHHHHH
Confidence 6433221 345678999999998775 47788999999999999999998863110000 0000112222222222
Q ss_pred hhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEE
Q psy14416 648 NRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 727 (1065)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~il 727 (1065)
.++...... . . .....++ + +..+++ .|.+.+|++.++
T Consensus 368 ~~~~~~~~~---------~--------~-------~~~~~~i-----~---~~~~~~-----------~l~~~l~~~~~v 404 (569)
T PRK08327 368 QEAAKRAEI---------E--------R-------LKDRGPI-----T---PAYLSY-----------CLGEVADEYDAI 404 (569)
T ss_pred hhhhhhhhh---------h--------c-------cCCCCCc-----C---HHHHHH-----------HHHHhcCccceE
Confidence 111110000 0 0 0012345 6 778889 999999998888
Q ss_pred EECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCc
Q psy14416 728 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 807 (1065)
Q Consensus 728 v~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1065)
+.+.+ |..+++.. ..| ..++
T Consensus 405 v~~~~----~~~~~~~~-----------------------------------------------~~~-------~~~~-- 424 (569)
T PRK08327 405 VTEYP----FVPRQARL-----------------------------------------------NKP-------GSYF-- 424 (569)
T ss_pred EeccH----HHHHhcCc-----------------------------------------------cCC-------CCee--
Confidence 86542 22211110 001 0011
Q ss_pred ccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccc
Q psy14416 808 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 887 (1065)
Q Consensus 808 g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 887 (1065)
++|.+|+| |+++|+++ |++++.
T Consensus 425 ------------------------~~~~~gsm----------------------------G~~lp~ai--Ga~la~---- 446 (569)
T PRK08327 425 ------------------------GDGSAGGL----------------------------GWALGAAL--GAKLAT---- 446 (569)
T ss_pred ------------------------eCCCCCCC----------------------------CcchHHHH--HHhhcC----
Confidence 12334444 99999998 999998
Q ss_pred ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh--HHHhhccCccccCCCEEEEE
Q psy14416 888 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT--YASIVESGEVTTVLPVILVI 965 (1065)
Q Consensus 888 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v 965 (1065)
|+++|+ +++|||+| +|+.++ ++|+ +|+++|+++||
T Consensus 447 ----p~~~vv---------------------------------~i~GDG~f-~~~~~e~~l~ta-----~~~~l~~~ivv 483 (569)
T PRK08327 447 ----PDRLVI---------------------------------ATVGDGSF-IFGVPEAAHWVA-----ERYGLPVLVVV 483 (569)
T ss_pred ----CCCeEE---------------------------------EEecCcce-eecCcHHHHHHH-----HHhCCCEEEEE
Confidence 999999 99999999 888765 8999 99999999999
Q ss_pred EcCCcccCCCchhhHhHHhhcCCc--ccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhc---CCCCEE
Q psy14416 966 VNNNGIYGGFDEATYASIVESGEV--TTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQT---TTRPSL 1040 (1065)
Q Consensus 966 ~nn~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~---~~~~~l 1040 (1065)
+||+| |+.+... ...++..+.. ....+.....+.+||.++|++||+.+++|++.+||+++++++++. .++|+|
T Consensus 484 ~NN~~-yg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~l 561 (569)
T PRK08327 484 FNNGG-WLAVKEA-VLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGRRSAV 561 (569)
T ss_pred EeCcc-cccchhH-HhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCCCcEE
Confidence 99977 5544432 1222211100 011112233367999999999999999999999999999999864 267999
Q ss_pred EEEEeCC
Q psy14416 1041 INILINP 1047 (1065)
Q Consensus 1041 i~~~~~~ 1047 (1065)
|||.++|
T Consensus 562 iev~v~~ 568 (569)
T PRK08327 562 LDVIVDR 568 (569)
T ss_pred EEEEccC
Confidence 9999976
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-71 Score=668.50 Aligned_cols=513 Identities=18% Similarity=0.231 Sum_probs=413.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
..++++++|++.|+++||+++||+||+++.+|++++.+ +|++|.++||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 10 AMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 35789999999999999999999999999999999964 69999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCC-ccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q-~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++||++|+.+++|||+|+|+.+.+..+++.+| .+||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+|
T Consensus 89 ~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 168 (530)
T PRK07092 89 MGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSI 168 (530)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999998888874 48999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++.+. .. + ........++++.+++++++|.+||||+
T Consensus 169 P~d~~~~~~~~--~~--~----------------------------------~~~~~~~~~~~~~~~~~~~~L~~AkrPv 210 (530)
T PRK07092 169 PYDDWDQPAEP--LP--A----------------------------------RTVSSAVRPDPAALARLGDALDAARRPA 210 (530)
T ss_pred cHHHhhCcccc--cc--c----------------------------------CCCCCCCCCCHHHHHHHHHHHHcCCCcE
Confidence 99998776542 10 0 0011123467888999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCC-CCCCCCCCCcccccH------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPM-GKGVVPDAHPNCVSA------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~-gkg~v~~~hpl~lg~------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.++|++|+|++|+||+++++ +||.+|++||+++|. ...+++++||+||.+|+++.+....+
T Consensus 211 Il~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~ 290 (530)
T PRK07092 211 LVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGAPVFTYHVEG 290 (530)
T ss_pred EEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhCCEEEEECCcccccccCC
Confidence 99999998888889999999999999999987 799999999999883 34567889999999999765444444
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
+...++++.++||||.|+..++. +..+..+.+|+..+|++|.+.++.. .+..|.. + +.....
T Consensus 291 ~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~d~~~~l~~L~~~l~~~-------~~~~~~~--~-------~~~~~~- 352 (530)
T PRK07092 291 PGPHLPEGAELVQLTDDPGEAAW-APMGDAIVGDIRLALRDLLALLPPS-------ARPAPPA--R-------PMPPPA- 352 (530)
T ss_pred ccccCCCCCeEEEEeCChHHhcC-CCCCCcccCCHHHHHHHHHHhhccc-------cccchhh--h-------hccccc-
Confidence 44445556789999999988766 4578999999999999999987521 0111110 0 000000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
. ....|+ + +..+++ .|.+.+|++.+++.|.|++..
T Consensus 353 ------------------~--------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~g~~~~ 387 (530)
T PRK07092 353 ------------------P--------APGEPL-----S---VAFVLQ-----------TLAALRPADAIVVEEAPSTRP 387 (530)
T ss_pred ------------------c--------CCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEeCCCccHH
Confidence 0 012245 6 777888 999999999999999998777
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|...++.. ..| ..++
T Consensus 388 ~~~~~~~~-----------------------------------------------~~~-------~~~~----------- 402 (530)
T PRK07092 388 AMQEHLPM-----------------------------------------------RRQ-------GSFY----------- 402 (530)
T ss_pred HHHHhcCc-----------------------------------------------CCC-------CceE-----------
Confidence 65432211 000 0000
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
+ + .+ +++|+++++++ |++++. |+++|
T Consensus 403 --------------~-~-~~----------------------------g~mG~~lp~ai--Ga~la~--------p~~~v 428 (530)
T PRK07092 403 --------------T-M-AS----------------------------GGLGYGLPAAV--GVALAQ--------PGRRV 428 (530)
T ss_pred --------------c-c-CC----------------------------CcccchHHHHH--HHHHhC--------CCCeE
Confidence 0 0 01 33488888887 999988 89999
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++|+++ +++++|+++||+||+| |+.+.
T Consensus 429 v---------------------------------~i~GDG~f-~~~~~eL~ta-----~~~~lp~~~vv~NN~~-~~~~~ 468 (530)
T PRK07092 429 I---------------------------------GLIGDGSA-MYSIQALWSA-----AQLKLPVTFVILNNGR-YGALR 468 (530)
T ss_pred E---------------------------------EEEeCchH-hhhHHHHHHH-----HHhCCCcEEEEEeChH-HHHHH
Confidence 9 99999999 9999999999 9999999999999987 33222
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
.. ......+ .......+++||.++|++||+++++|++.+||+++++++++. ++|+||||.+|
T Consensus 469 ~~--~~~~~~~-----~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~~al~~a~~~-~~p~liev~~d 530 (530)
T PRK07092 469 WF--APVFGVR-----DVPGLDLPGLDFVALARGYGCEAVRVSDAAELADALARALAA-DGPVLVEVEVA 530 (530)
T ss_pred HH--HHhhCCC-----CCCCCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEcC
Confidence 11 1110001 122333478999999999999999999999999999999976 89999999985
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-71 Score=664.54 Aligned_cols=501 Identities=17% Similarity=0.177 Sum_probs=393.1
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
|+++++|++.|+++||+++||+||+.+.++++++.+ ++|++|.+|||++|+|||+||||+||+|+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 478999999999999999999999999999999976 5899999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+..+.+.+.+|++||.++|+++|||+.++++++++++.+++|++.|+++|||||||+||.
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++.++++.+... ........++++.+++++++|++||||+|+
T Consensus 161 Dv~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~~~~L~~A~rPvi~ 203 (514)
T PRK07586 161 DVAWSEGGPPAPP-------------------------------------PPAPAPAAVDPAAVEAAAAALRSGEPTVLL 203 (514)
T ss_pred chhcccccccccc-------------------------------------CCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 9987765422110 000122346788999999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCEEecC------CCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCC-
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPFLPTP------MGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRA- 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV~tt~------~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~- 578 (1065)
+|.++.++++.+++++|||++|+||+++. ++||.++++|+.+.+.....++++|||||.+|+++... ...+.
T Consensus 204 ~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~~~~~~-~~~~~~ 282 (514)
T PRK07586 204 LGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGAKAPVA-FFAYPG 282 (514)
T ss_pred eCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECCCCccc-ccccCC
Confidence 99999988889999999999999999865 59999999998887877777899999999999986321 11110
Q ss_pred --cc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 579 --PR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 579 --~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
.. +..+.++++++. ..+|++.+|++|.+.++... . .. .+.. . ....
T Consensus 283 ~~~~~~~~~~~~~~~~~--------------~~~d~~~~l~~L~~~l~~~~------~-~~---~~~~----~---~~~~ 331 (514)
T PRK07586 283 KPSRLVPEGCEVHTLAG--------------PGEDAAAALEALADALGAKP------A-AP---PLAA----P---ARPP 331 (514)
T ss_pred CccccCCCCceEEEECC--------------CcccHHHHHHHHHHhhcccc------c-ch---hhhh----c---cccC
Confidence 01 111223332221 13799999999988775210 0 00 0000 0 0000
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....|+ + +..+++ .|.+.||++++++.|+|++.
T Consensus 332 ----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~ivv~d~g~~~ 364 (514)
T PRK07586 332 ----------------------------LPTGAL-----T---PEAIAQ-----------VIAALLPENAIVVDESITSG 364 (514)
T ss_pred ----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCeEEEeCCCcCH
Confidence 012245 6 677888 99999999999999998866
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|...++.. ..| +.
T Consensus 365 ~~~~~~~~~-----------------------------------------------~~~-------~~------------ 378 (514)
T PRK07586 365 RGFFPATAG-----------------------------------------------AAP-------HD------------ 378 (514)
T ss_pred HHHHHhccc-----------------------------------------------cCC-------CC------------
Confidence 664422211 000 00
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
.+.+.| |+| |+++|+++ ||+++. |+++
T Consensus 379 -------------~~~~~~--g~m----------------------------G~~lpaai--Ga~lA~--------p~r~ 405 (514)
T PRK07586 379 -------------WLTLTG--GAI----------------------------GQGLPLAT--GAAVAC--------PDRK 405 (514)
T ss_pred -------------EEccCC--ccc----------------------------ccHHHHHH--HHHHhC--------CCCe
Confidence 001111 344 99999988 999998 9999
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.+||+|+ +|+++|+++||+||+| |+.+
T Consensus 406 Vv---------------------------------~i~GDGsf-~m~~~EL~Ta-----~~~~lpv~ivV~NN~~-y~~~ 445 (514)
T PRK07586 406 VL---------------------------------ALQGDGSA-MYTIQALWTQ-----ARENLDVTTVIFANRA-YAIL 445 (514)
T ss_pred EE---------------------------------EEEechHH-HhHHHHHHHH-----HHcCCCCEEEEEeCch-hHHH
Confidence 99 99999999 9999999999 9999999999999988 4433
Q ss_pred chhhHhHHhhcCCcccC-CCCCC-CCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 976 DEATYASIVESGEVTTV-SPPTS-LGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
... + ........... ..... ..+++||.++|++||+++++|++.+||+++|+++++. ++|.||||.+
T Consensus 446 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~~~-~~p~liev~~ 514 (514)
T PRK07586 446 RGE-L-ARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVTTAEEFADALAAALAE-PGPHLIEAVV 514 (514)
T ss_pred HHH-H-HHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHcC-CCCEEEEEEC
Confidence 221 1 11100000000 01112 2357999999999999999999999999999999986 8999999975
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=676.14 Aligned_cols=532 Identities=18% Similarity=0.202 Sum_probs=413.4
Q ss_pred cccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 263 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 263 ~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
+++.++++++|++.|+++||+||||+||+.+.++++++.+ .+|++|.||||++|+|||+||+|+|| |+||++|+|||+
T Consensus 12 ~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~ 90 (578)
T PLN02573 12 SSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFTVGG 90 (578)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecCccH
Confidence 4567899999999999999999999999999999999965 57999999999999999999999999 999999999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCc--------cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhc
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 413 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~--------idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~ 413 (1065)
+|+++++++|+.+++|||+|+|+.+...++++.+|+ .++.++|+++|||+.++.+++++++.+++|++.|++
T Consensus 91 ~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~ 170 (578)
T PLN02573 91 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALK 170 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988777766432 234689999999999999999999999999999998
Q ss_pred CCCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHH
Q psy14416 414 GKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQAS 493 (1065)
Q Consensus 414 ~~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~a 493 (1065)
+| |||||+||.|++.++.+.....+.+.. + ........++++.+++++
T Consensus 171 ~~-gPV~l~iP~Dv~~~~~~~~~~~~~~~~------~-------------------------~~~~~~~~~~~~~~~~a~ 218 (578)
T PLN02573 171 ES-KPVYISVSCNLAAIPHPTFSREPVPFF------L-------------------------TPRLSNKMSLEAAVEAAA 218 (578)
T ss_pred cC-CCEEEEeehhhhcCccccccCCCCCcc------c-------------------------ccCCCChHHHHHHHHHHH
Confidence 75 899999999998766432110000000 0 000111224567899999
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEe
Q psy14416 494 RLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLL 565 (1065)
Q Consensus 494 e~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~i 565 (1065)
++|++||||+||+|.++.++++.+++++|||++|+||++|+++||++|++||+++|. ...+++++||+||.+
T Consensus 219 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~l 298 (578)
T PLN02573 219 EFLNKAVKPVLVGGPKLRVAKACKAFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFA 298 (578)
T ss_pred HHHHhCCCCEEEEChhhcccchHHHHHHHHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEE
Confidence 999999999999999998888899999999999999999999999999999999873 345678899999999
Q ss_pred CCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHH
Q psy14416 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKC 645 (1065)
Q Consensus 566 G~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~ 645 (1065)
|+++++..+.+|.. +.+++++||||.|+..+++.+ +..+. |+..+|++|.+.++.. ...|. .|+..
T Consensus 299 G~~l~~~~~~~~~~-~~~~~~~I~id~d~~~i~~~~--~~~~~-~~~~~l~~L~~~l~~~--------~~~~~-~~~~~- 364 (578)
T PLN02573 299 GPIFNDYSSVGYSL-LLKKEKAIIVQPDRVTIGNGP--AFGCV-LMKDFLEALAKRVKKN--------TTAYE-NYKRI- 364 (578)
T ss_pred CCccCCcccccccc-cCCCCcEEEEeCCEEEECCcc--eECCc-CHHHHHHHHHHHhhcc--------ccccc-ccccc-
Confidence 99998766554432 345678999999999988754 34444 7999999998887521 11221 11100
Q ss_pred HhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcE
Q psy14416 646 QTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 725 (1065)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ 725 (1065)
.... ... . .. ....|+ + +..+++ .|++.+|+|+
T Consensus 365 --~~~~-~~~----------~--------~~-------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~ 397 (578)
T PLN02573 365 --FVPE-GEP----------L--------KS-------EPGEPL-----R---VNVLFK-----------HIQKMLSGDT 397 (578)
T ss_pred --ccCc-ccC----------C--------CC-------CCCCcc-----C---HHHHHH-----------HHHHhcCCCC
Confidence 0000 000 0 00 112346 6 777888 9999999999
Q ss_pred EEEECCCCcCcccc-cchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccc
Q psy14416 726 VIVNNNGIYGGFDE-TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 804 (1065)
Q Consensus 726 ilv~d~G~~~~~~~-~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1065)
+++.|+|++ |.. +++. .|. + ..
T Consensus 398 iiv~D~G~~--~~~~~~~~-----------~~~------------------------------------~-------~~- 420 (578)
T PLN02573 398 AVIAETGDS--WFNCQKLK-----------LPE------------------------------------G-------CG- 420 (578)
T ss_pred EEEEecccc--hhhHHhcc-----------CCC------------------------------------C-------Ce-
Confidence 999999874 211 0000 000 0 00
Q ss_pred cCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheec
Q psy14416 805 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 884 (1065)
Q Consensus 805 ~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 884 (1065)
+-+++.+|+| |+++|+++ ||+++.
T Consensus 421 -------------------------~~~~~~~gsm----------------------------G~glpaai--Ga~lA~- 444 (578)
T PLN02573 421 -------------------------YEFQMQYGSI----------------------------GWSVGATL--GYAQAA- 444 (578)
T ss_pred -------------------------EEeecchhhh----------------------------hhhhhHHH--HHHHhC-
Confidence 0002224444 99999999 999999
Q ss_pred cccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEE
Q psy14416 885 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 964 (1065)
Q Consensus 885 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1065)
|+++|| +++|||+| +|+.+||+|+ +|+++|+++|
T Consensus 445 -------p~r~vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpvv~v 478 (578)
T PLN02573 445 -------PDKRVI---------------------------------ACIGDGSF-QVTAQDVSTM-----IRCGQKSIIF 478 (578)
T ss_pred -------CCCceE---------------------------------EEEeccHH-HhHHHHHHHH-----HHcCCCCEEE
Confidence 999999 99999999 9999999999 9999999999
Q ss_pred EEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcC-----CCeEeeCCHHHHHHHHHHHHh-cCCCC
Q psy14416 965 IVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG-----HDGYLCTTVPQIKQAMKKCLQ-TTTRP 1038 (1065)
Q Consensus 965 v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~l~~~~~~~~~-~~~~~ 1038 (1065)
|+||++ |+..... + + ..+...+++||.++|++|| +++.+|++.+||+++|+++++ ..++|
T Consensus 479 V~NN~~-yg~~~~~-~------~------~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p 544 (578)
T PLN02573 479 LINNGG-YTIEVEI-H------D------GPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCL 544 (578)
T ss_pred EEeCCc-eeEEEee-c------c------cCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCc
Confidence 999987 4432211 0 0 0123346799999999996 889999999999999999985 24899
Q ss_pred EEEEEEeCCCCCCCcchhhhhHhh
Q psy14416 1039 SLINILINPSADRKPQNFSWLTNL 1062 (1065)
Q Consensus 1039 ~li~~~~~~~~~~~~~~~~~~~~~ 1062 (1065)
.||||.+++++...+ ...|...+
T Consensus 545 ~lieV~v~~~~~~~~-~~~~~~~~ 567 (578)
T PLN02573 545 CFIEVIVHKDDTSKE-LLEWGSRV 567 (578)
T ss_pred EEEEEEcCcCCCCHH-HHHHHHHH
Confidence 999999998876655 56666554
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=662.46 Aligned_cols=503 Identities=17% Similarity=0.166 Sum_probs=392.9
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+.+.++++++.+ .+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~ 83 (518)
T PRK12474 4 TMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANG 83 (518)
T ss_pred CccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhHh
Confidence 5689999999999999999999999999999999965 589999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|+|+.+..+.+.+.+|+.||..+++++|||+.++.+++++++.|+||++.|.++|||||||+||
T Consensus 84 ~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP 163 (518)
T PRK12474 84 LANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMP 163 (518)
T ss_pred HHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++.++++.+... .. . .....++.+.+++++++|++||||+|
T Consensus 164 ~Dv~~~~~~~~~~~---~~--------------------------------~--~~~~~~~~~~i~~~~~~L~~A~rPvi 206 (518)
T PRK12474 164 ADVAWNEAAYAAQP---LR--------------------------------G--IGPAPVAAETVERIAALLRNGKKSAL 206 (518)
T ss_pred hhhhcccccCCcCC---CC--------------------------------C--CCCCCCCHHHHHHHHHHHHcCCCcEE
Confidence 99987665321000 00 0 01123678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEec------CCCCCCCCC-CCcccccHHHHhhhcCCCEEEEeCCccccc--ccc
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPT------PMGKGVVPD-AHPNCVSAARTHALQNADLVLLLGARLNWI--LHF 575 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt------~~gkg~v~~-~hpl~lg~~~~~al~~aDlVI~iG~~~~~~--~~~ 575 (1065)
++|.++.++++.+++++|+|++|+||+++ +++||.+|+ +||++ ......++++||+||.+|+++++. ...
T Consensus 207 l~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~-~~~~~~~~~~aDlvl~lG~~~~~~~~~~~ 285 (518)
T PRK12474 207 LLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYF-HEQITAFLKDVEQLVLVGAKPPVSFFAYP 285 (518)
T ss_pred EECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccc-hHHHHHHHhhCCEEEEECCCCCccccccC
Confidence 99999988888999999999999999975 468999995 55665 444556889999999999996431 111
Q ss_pred C-CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 576 G-RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 576 g-~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
. +...+.+..++++++.. .+|+..+|++|.+.++.. ..|... ......
T Consensus 286 ~~~~~~~~~~~~i~~~~~~--------------~~d~~~~l~~L~~~l~~~---------~~~~~~-------~~~~~~- 334 (518)
T PRK12474 286 GKPSWGAPPGCEIVYLAQP--------------DEDLAQALQDLADAVDAP---------AEPAAR-------TPLALP- 334 (518)
T ss_pred CCccccCCCCCEEEEECCC--------------CcCHHHHHHHHHHhcccc---------cccccc-------cccccc-
Confidence 1 11112334667776632 169999999998876410 001000 000000
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
. ....|+ + +..+++ .|.+.+|+|++++.|+|++
T Consensus 335 ~----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~d~iv~~d~g~~ 367 (518)
T PRK12474 335 A----------------------------LPKGAL-----N---SLGVAQ-----------LIAHRTPDQAIYADEALTS 367 (518)
T ss_pred C----------------------------CCCCCc-----C---HHHHHH-----------HHHHHCCCCeEEEECCCcC
Confidence 0 012245 6 667888 9999999999999999987
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|..+++.. ..| +.+
T Consensus 368 ~~~~~~~~~~-----------------------------------------------~~p-------~~~---------- 383 (518)
T PRK12474 368 GLFFDMSYDR-----------------------------------------------ARP-------HTH---------- 383 (518)
T ss_pred HHHHHHhhcc-----------------------------------------------cCC-------CCE----------
Confidence 7764433221 001 000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
+. ++ +++||+++|+++ ||+++. |++
T Consensus 384 ---------------~~-~~-----------------------------~gsmG~glpaAi--Ga~lA~--------p~r 408 (518)
T PRK12474 384 ---------------LP-LT-----------------------------GGSIGQGLPLAA--GAAVAA--------PDR 408 (518)
T ss_pred ---------------Ec-cC-----------------------------CCccCccHHHHH--HHHHHC--------CCC
Confidence 00 11 134499999999 999998 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|| +++|||+| +|+.|||+|+ +|+++|+++||+||+| |+.
T Consensus 409 ~vv---------------------------------~i~GDG~f-~m~~qEL~Ta-----~r~~lpv~iiV~NN~~-y~~ 448 (518)
T PRK12474 409 KVV---------------------------------CPQGDGGA-AYTMQALWTM-----ARENLDVTVVIFANRS-YAI 448 (518)
T ss_pred cEE---------------------------------EEEcCchh-cchHHHHHHH-----HHHCCCcEEEEEcCCc-chH
Confidence 999 99999999 9999999999 9999999999999988 554
Q ss_pred CchhhHhHHhhcCCcccCCCCCC-CCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 975 FDEATYASIVESGEVTTVSPPTS-LGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
.... .................. ..+++||.++|++||+++++|++.+||+++|+++++. ++|.||||.+
T Consensus 449 i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~~-~~p~liev~~ 518 (518)
T PRK12474 449 LNGE-LQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRATTAEEFSAQYAAAMAQ-RGPRLIEAMI 518 (518)
T ss_pred HHHH-HHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3321 111000000000001111 2356999999999999999999999999999999986 8999999975
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-71 Score=665.99 Aligned_cols=509 Identities=17% Similarity=0.156 Sum_probs=400.6
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCC-ceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
+.+++|++.|+++||+++||+||+.+.++++++.+.+ |++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 4689999999999999999999999999999997766 999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCc-----cC-hhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEE
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQE-----CP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSY 420 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~-----id-Q~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~ 420 (1065)
|+++|+.+++|||+|+|+.++...+++.+|+ +| |.++|+++|||+.++.+++++++.+++|++.|++ +|||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~ 159 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVY 159 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEE
Confidence 9999999999999999999998888877543 64 8899999999999999999999999999999997 669999
Q ss_pred EecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCC
Q psy14416 421 LDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 421 L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Ak 500 (1065)
|+||.|++.++++..... ...+....+..+.+++++++|++||
T Consensus 160 i~iP~Dv~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~~~~l~~Ak 202 (535)
T TIGR03394 160 LEIPRDMVNAEVEPVPDD-------------------------------------PAWPVDRDALDACADEVLARMRSAT 202 (535)
T ss_pred EEechhhccCccCCCCCC-------------------------------------CCCCCChHHHHHHHHHHHHHHHhCC
Confidence 999999988776421100 0001111223567899999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCccccc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWI 572 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~ 572 (1065)
||+|++|.++.++++.+++++|||++|+||++|++|||.+|++||+++|. ..++++++|||||.+|+++++.
T Consensus 203 rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~ 282 (535)
T TIGR03394 203 SPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDT 282 (535)
T ss_pred CCEEEEChhhcccCcHHHHHHHHHHhCCCEEEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCccccc
Confidence 99999999998888899999999999999999999999999999999882 3567889999999999999875
Q ss_pred cccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcc
Q psy14416 573 LHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVK 652 (1065)
Q Consensus 573 ~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 652 (1065)
...... .+.++.++||||.|+..+++++..++.+ .|+...|++|.+.+... .+..|...+. ...
T Consensus 283 ~~~~~~-~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~~~~-------~~~~~~~~~~-------~~~ 346 (535)
T TIGR03394 283 NFAVSQ-RKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGLPPS-------DRTTRGKGPH-------AYP 346 (535)
T ss_pred cccccc-ccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhccccc-------cccccccccc-------ccc
Confidence 432221 1234578999999999999888888888 78888888877654310 0000111000 000
Q ss_pred cchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCc--EEEEEC
Q psy14416 653 LPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI--LVIVNN 730 (1065)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d--~ilv~d 730 (1065)
... . .+..++ + +..+++ .|.+.||++ .+++.|
T Consensus 347 ~~~-------------------~--------~~~~~i-----~---p~~~~~-----------~l~~~l~~~~~~ii~~D 380 (535)
T TIGR03394 347 RGL-------------------Q--------ADAEPI-----A---PMDIAR-----------AVNDRFARHGQMPLAAD 380 (535)
T ss_pred ccc-------------------C--------CCCCCc-----C---HHHHHH-----------HHHHHhCCCCCEEEEEc
Confidence 000 0 012245 5 667888 999999875 578999
Q ss_pred CCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccc
Q psy14416 731 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 810 (1065)
Q Consensus 731 ~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 810 (1065)
+|++.-|... + . + ..
T Consensus 381 ~G~~~~~~~~-~--------------------------------------~------------~-------~~------- 395 (535)
T TIGR03394 381 IGDCLFTAMD-M--------------------------------------D------------D-------AG------- 395 (535)
T ss_pred cCHHHHHHHh-c--------------------------------------C------------C-------Cc-------
Confidence 8863222100 0 0 0 00
Q ss_pred cccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccc
Q psy14416 811 ASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTV 890 (1065)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 890 (1065)
+-++|-+|+| |+++|+++ ||+++.
T Consensus 396 -------------------~~~~~~~g~m----------------------------G~glpaai--Ga~lA~------- 419 (535)
T TIGR03394 396 -------------------LMAPGYYAGM----------------------------GFGVPAGI--GAQCTS------- 419 (535)
T ss_pred -------------------EECcCccchh----------------------------hhHHHHHH--HHHhCC-------
Confidence 0112335555 99999999 999986
Q ss_pred cccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCc
Q psy14416 891 LPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 970 (1065)
Q Consensus 891 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g 970 (1065)
|. +++ +++|||+| +|+.|||+|+ +|+++|+++||+||+|
T Consensus 420 -~~-r~v---------------------------------~i~GDG~f-~m~~~EL~Ta-----~r~~lpv~~vV~NN~~ 458 (535)
T TIGR03394 420 -GK-RIL---------------------------------TLVGDGAF-QMTGWELGNC-----RRLGIDPIVILFNNAS 458 (535)
T ss_pred -CC-CeE---------------------------------EEEeChHH-HhHHHHHHHH-----HHcCCCcEEEEEECCc
Confidence 53 447 78999999 9999999999 9999999999999988
Q ss_pred ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 971 IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
|+...... . . . .+...+++||.++|++||+++.+|++.+||+++++++++..++|.||||.++|.+-
T Consensus 459 -y~~~~~~~--~----~-----~-~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~ 525 (535)
T TIGR03394 459 -WEMLRVFQ--P----E-----S-AFNDLDDWRFADMAAGMGGDGVRVRTRAELAAALDKAFATRGRFQLIEAMLPRGVL 525 (535)
T ss_pred -cceeehhc--c----C-----C-CcccCCCCCHHHHHHHcCCCceEeCCHHHHHHHHHHHHhcCCCeEEEEEECCcccC
Confidence 44332211 0 0 0 11223469999999999999999999999999999999764568999999987776
Q ss_pred C
Q psy14416 1051 R 1051 (1065)
Q Consensus 1051 ~ 1051 (1065)
.
T Consensus 526 ~ 526 (535)
T TIGR03394 526 S 526 (535)
T ss_pred C
Confidence 5
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-71 Score=671.63 Aligned_cols=538 Identities=15% Similarity=0.132 Sum_probs=405.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++.+++|++.|+++||+++||+||+++.++++++.+ .+|++|.++||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 8 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~ 87 (568)
T PRK07449 8 NTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANL 87 (568)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhh
Confidence 4789999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCCh--hhHHHHHHHHHH---HhhcCCCCEE
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNI--HLIGQHVEKAVR---LSTFGKPGVS 419 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~--~~i~~~i~~A~~---~A~~~~~GPV 419 (1065)
++||++|+.+++|||+|+|+++...++++.+|++||.++|+++|+++.+..+. +.+...++++++ .|.++++|||
T Consensus 88 l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV 167 (568)
T PRK07449 88 YPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPV 167 (568)
T ss_pred hHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 99999999999999999999999999999999999999999999887776544 233443444444 4777899999
Q ss_pred EEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhC
Q psy14416 420 YLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499 (1065)
Q Consensus 420 ~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~A 499 (1065)
||+||.|++..+....... .+........|+ ........+++..+++++++|++
T Consensus 168 ~i~iP~Dv~~~~~~~~~~~-~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~l~~- 221 (568)
T PRK07449 168 HINCPFREPLYPDDDDDTG-SPWLAPLGDWWQ------------------------DDWLRQTVQPEVTSQRDWDIWRQ- 221 (568)
T ss_pred EEeCCCCCCCCCCCccccc-cccccccccccc------------------------ccccccccCccccchhhhhhhcc-
Confidence 9999999865443211000 000000000000 00000123456678999999998
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHH--------HHhhhcCCCEEEEeCCcccc
Q psy14416 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNW 571 (1065)
Q Consensus 500 krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~--------~~~al~~aDlVI~iG~~~~~ 571 (1065)
|||+|++|.++.+. .++|.+|+|++|+||++++++|+.+|++||+++|.. ..+++++||+||.+|+++.+
T Consensus 222 krPvii~G~g~~~~--~~~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~ 299 (568)
T PRK07449 222 KRGVVIAGRLSAEE--GQAIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTS 299 (568)
T ss_pred CCeEEEECCCChHH--HHHHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCc
Confidence 99999999999743 389999999999999999999999999999998832 34567899999999999876
Q ss_pred ccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhc
Q psy14416 572 ILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQV 651 (1065)
Q Consensus 572 ~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 651 (1065)
..+..|... .+.++||||.|+..+++.+..++.+.+|++.+|++ ... .....|.++++...+++...
T Consensus 300 ~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~-~~~----------~~~~~~~~~~~~~~~~~~~~ 366 (568)
T PRK07449 300 KRLLQWLAD--CEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA-HPA----------EKRKPWLQEWQALNEKAREA 366 (568)
T ss_pred hhHHHHHhc--CCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh-ccc----------ccchHHHHHHHHHHHHHHHH
Confidence 555445322 23489999999999999999999999999999998 221 11346777666544433322
Q ss_pred ccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECC
Q psy14416 652 KLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNN 731 (1065)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~ 731 (1065)
.++. ....++ + +..+++ .|.+.+|++.+|+.|+
T Consensus 367 ~~~~----------------------------~~~~~i-----~---~~~~~~-----------~l~~~l~~~~iv~~~~ 399 (568)
T PRK07449 367 VREQ----------------------------LAEDTF-----T---EAKVAA-----------ALADLLPEGGQLFVGN 399 (568)
T ss_pred HHHH----------------------------hccCCc-----c---HHHHHH-----------HHHHhCCCCCeEEEEC
Confidence 2111 011235 6 677888 9999999999999999
Q ss_pred CCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccc
Q psy14416 732 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 811 (1065)
Q Consensus 732 G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 811 (1065)
|++..|..+++.. .. |.
T Consensus 400 g~~~~~~~~~~~~-----~~----~~------------------------------------------------------ 416 (568)
T PRK07449 400 SLPVRDVDAFGQL-----PD----GY------------------------------------------------------ 416 (568)
T ss_pred cHHHHHHHHccCc-----CC----Cc------------------------------------------------------
Confidence 8755553322211 00 00
Q ss_pred ccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccccccc
Q psy14416 812 SIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL 891 (1065)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 891 (1065)
.++.|.| +|+ +|+++|+++ ||+++
T Consensus 417 ----------------~~~~~~g-~~~----------------------------~G~~lpaai--Gaala--------- 440 (568)
T PRK07449 417 ----------------PVYSNRG-ASG----------------------------IDGLLSTAA--GVARA--------- 440 (568)
T ss_pred ----------------eEEecCC-ccc----------------------------hhhHHHHHH--HHHhc---------
Confidence 0111111 122 388888877 88886
Q ss_pred ccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCc-
Q psy14416 892 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG- 970 (1065)
Q Consensus 892 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g- 970 (1065)
|+++|+ +++|||+| +|+.++++|+ +|+++|+++||+||+|
T Consensus 441 ~~~~vv---------------------------------~i~GDGsf-~~~~~eL~Ta-----~r~~l~i~ivVlNN~g~ 481 (568)
T PRK07449 441 SAKPTV---------------------------------ALIGDLSF-LHDLNGLLLL-----KQVPAPLTIVVVNNNGG 481 (568)
T ss_pred CCCCEE---------------------------------EEechHHh-hcCcHHHHhh-----cccCCCeEEEEEECCCC
Confidence 467899 99999999 9999999999 9999999999999998
Q ss_pred -ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 971 -IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 971 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
+|+.+...+ + +.. ....+...+++||.++|++||+++++|+|.+||+++|+++++. ++|+||||.+++++
T Consensus 482 ~~~~~~~~~~--~----~~~--~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~~-~~p~lIev~id~~~ 552 (568)
T PRK07449 482 GIFSLLPQPE--E----EPV--FERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADALPT-PGLTVIEVKTNRSQ 552 (568)
T ss_pred ccccCCCCCC--C----cch--hhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhcC-CCCEEEEEeCChhh
Confidence 333322110 0 000 0112233467999999999999999999999999999999976 89999999999877
Q ss_pred CCCcchhhhhH
Q psy14416 1050 DRKPQNFSWLT 1060 (1065)
Q Consensus 1050 ~~~~~~~~~~~ 1060 (1065)
..+ .+.|..
T Consensus 553 ~~~--~~~~~~ 561 (568)
T PRK07449 553 GAQ--LLQALL 561 (568)
T ss_pred hHH--HHHHHH
Confidence 643 445543
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=656.38 Aligned_cols=507 Identities=17% Similarity=0.187 Sum_probs=399.5
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
+++++|++.|+++||+++||+||+.+.++++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|+++
T Consensus 2 t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~ 80 (539)
T TIGR03393 2 TVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAIN 80 (539)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhh
Confidence 68999999999999999999999999999999965 58999999999999999999999999 79999999999999999
Q ss_pred ccccccccCcceEeecCCCccCC----------CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDH----------EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~----------~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
||++|+.+++|||+|+|+.+... .+.+.+|++ .++++++|||+..+ +++++++.+++|++.|... +
T Consensus 81 gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~-~ 156 (539)
T TIGR03393 81 GIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRE-R 156 (539)
T ss_pred HHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhc-C
Confidence 99999999999999999988742 244456653 68999999999866 7889999999999999875 4
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
|||||+||.|++.++++.+... .. . ..+......+++.+++++++|
T Consensus 157 gPv~l~iP~Dv~~~~~~~~~~~---~~--~-----------------------------~~~~~~~~~~~~~i~~a~~~L 202 (539)
T TIGR03393 157 RPGYLMLPVDVAAKAVTPPVNP---LV--T-----------------------------HKPAHADSALRAFRDAAENKL 202 (539)
T ss_pred CCEEEEecccccCCccCCCCcc---cC--c-----------------------------CCCCCChHHHHHHHHHHHHHH
Confidence 8999999999988876532100 00 0 000000011134589999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
++||||+|++|.++.++++.+++.+|+|++++||++|+++||.+|++||+++|. ..++++++||+||.+|++
T Consensus 203 ~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~ 282 (539)
T TIGR03393 203 AMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVR 282 (539)
T ss_pred HhCCCCEEEeChhhcccChHHHHHHHHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCc
Confidence 999999999999998888899999999999999999999999999999999872 456788999999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+++..+.+|...+.+ .++|+||+|+..+++++..++.+ +|+..+|++|.+.+.. .|... . ..
T Consensus 283 l~~~~~~~~~~~~~~-~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~~-----------~~~~~-~----~~ 344 (539)
T TIGR03393 283 FTDTITAGFTHQLTP-EQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAGL-----------MWSSS-G----AI 344 (539)
T ss_pred ccccccceeeccCCc-ccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhccc-----------ccccc-c----cc
Confidence 987665555333433 57899999999998888888887 9999999999876641 12210 0 00
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
+... .. .+..|+ + +..+++ .|.+.+|++.+++
T Consensus 345 ----~~~~------------------~~-------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iiv 376 (539)
T TIGR03393 345 ----PFPQ------------------PD-------ESRSAL-----S---QENFWQ-----------TLQTFLRPGDIIL 376 (539)
T ss_pred ----CcCC------------------CC-------CCCCcc-----C---HHHHHH-----------HHHHhcCCCCEEE
Confidence 0000 00 011245 6 667888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|.|++. |..+++.. + .+ +.++
T Consensus 377 ~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~~~--- 398 (539)
T TIGR03393 377 ADQGTSA-FGAADLRL-----------P------------------------------------AD-------VNFI--- 398 (539)
T ss_pred EccCchh-hhhhhccC-----------C------------------------------------CC-------CeEE---
Confidence 9998764 43322110 0 00 0000
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
+++-+|+| |+++++++ ||+++.
T Consensus 399 -----------------------~~~~~g~m----------------------------G~glpaai--Ga~la~----- 420 (539)
T TIGR03393 399 -----------------------VQPLWGSI----------------------------GYTLPAAF--GAQTAC----- 420 (539)
T ss_pred -----------------------echhhhhh----------------------------hhHHHHHH--HHHhcC-----
Confidence 12224445 99999999 999998
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|| +++|||+| +|+.+||+|+ +|+++|+++||+||
T Consensus 421 ---p~~~vv---------------------------------~i~GDG~f-~m~~~EL~Ta-----~~~~lpi~~vV~NN 458 (539)
T TIGR03393 421 ---PNRRVI---------------------------------LLIGDGSA-QLTIQELGSM-----LRDKQHPIILVLNN 458 (539)
T ss_pred ---CCCCeE---------------------------------EEEcCcHH-HhHHHHHHHH-----HHcCCCCEEEEEeC
Confidence 999999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC----eEeeCCHHHHHHHHHHHHhcCCCCEEEEEE
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD----GYLCTTVPQIKQAMKKCLQTTTRPSLINIL 1044 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 1044 (1065)
+| |+..... .. .+ ..+...+++||.++|++||++ +++|++.+||+++++++++. ++|+||||.
T Consensus 459 ~~-y~~i~~~-----~~-~~-----~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~-~~p~liev~ 525 (539)
T TIGR03393 459 EG-YTVERAI-----HG-AE-----QRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAH-ERLSLIEVV 525 (539)
T ss_pred Cc-eEEEEee-----cC-CC-----CCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhcc-CCeEEEEEE
Confidence 88 3322210 00 00 112233569999999999996 89999999999999999986 999999999
Q ss_pred eCCCCC
Q psy14416 1045 INPSAD 1050 (1065)
Q Consensus 1045 ~~~~~~ 1050 (1065)
+++++.
T Consensus 526 i~~~~~ 531 (539)
T TIGR03393 526 LPKADI 531 (539)
T ss_pred cCcccC
Confidence 987654
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=605.37 Aligned_cols=538 Identities=17% Similarity=0.167 Sum_probs=417.1
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+..-+..+++.|.++||++++.|||||++||..++.++ .|++++..|||+|+|+|+|+||++++|++++||||++++|+
T Consensus 7 nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl 86 (566)
T COG1165 7 NTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANL 86 (566)
T ss_pred hHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhc
Confidence 34567889999999999999999999999999998765 79999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh-------HHHHHHHHHHHhhcCCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL-------IGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~-------i~~~i~~A~~~A~~~~~G 417 (1065)
+|||+||..+++||||||+|||.|++++|++|+|||.+||+++++|+.++..|+. +.....++.+.|+...+|
T Consensus 87 ~PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~~G 166 (566)
T COG1165 87 YPAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAG 166 (566)
T ss_pred cHHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999987763 556666777778788999
Q ss_pred EEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHH
Q psy14416 418 VSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497 (1065)
Q Consensus 418 PV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~ 497 (1065)
|||||||++.+..+...+.....+ ..++..+| ++. ..+...... .+.+.. .+.+
T Consensus 167 pVHiN~PfrePL~p~~~~~~~~~~-~~~~~~~~------------~~~----------~~~~~~~~~-~~~~~~-~~~~- 220 (566)
T COG1165 167 PVHINVPFREPLVPDLEPEGAGTP-WGRPLGHW------------WFY----------TGPWTVDQG-PDLLSE-WFFW- 220 (566)
T ss_pred ceEecCCCCccCCCCCCccccccc-cccccCch------------hhc----------CCceeeecc-cccccc-hhhh-
Confidence 999999998877665544211001 00011111 000 000000110 111222 3333
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCC--CCCCCcccccH-HHHhhhcCCCEEEEeCCccccccc
Q psy14416 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGV--VPDAHPNCVSA-ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 498 ~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~--v~~~hpl~lg~-~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
.+||++||+|.... ...+.+.++++.+|||+++++.+.-. ++.. ..++.. ...+-+ .+|+||+||.++.+|..
T Consensus 221 ~~~rgviv~G~~~~--~e~~~i~~~a~~lg~PilaDplS~lr~~i~~y-D~~L~~~~~~~~L-~~d~VI~fG~~~~SK~l 296 (566)
T COG1165 221 RQKRGVIVAGRMSA--QEGKGILALANTLGWPILADPLSPLRNYIPCY-DLWLANPKAAEKL-RPDIVIQFGSPPTSKRL 296 (566)
T ss_pred cccCceEEEecCch--hhhHHHHHHHHHhCCceecccccccCCCcccc-hhhhcCchhhhhc-CccEEEEeCCCcccHHH
Confidence 46899999998665 44566999999999999999987422 2222 233332 233333 55999999999999999
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.+|+..+. ..+.|.||+.+.+.|+.+..+..+.+++..+++.+..... .+.+|+++|....++.++.+.+
T Consensus 297 ~qwl~~~~-~~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~Wl~~~~~~~~~~~~~v~~ 366 (566)
T COG1165 297 LQWLADTE-PIEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGR---------IRKPWLDEWLALNEKARQAVRD 366 (566)
T ss_pred HHHHhccC-CCcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccc---------cccHHHHHHHHHHHHHHHHHHH
Confidence 99987543 3678889999999999999999999999999976644322 1578999999999988888765
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
.+ ... .+ + +..++. +|.+.||+++.++.+||+
T Consensus 367 ~~---------------------------~~~-~~-----~---e~~~a~-----------~l~~~lp~~~~LFvgNSm- 398 (566)
T COG1165 367 QL---------------------------AAE-AL-----T---EAHLAA-----------ALADLLPPQDQLFVGNSM- 398 (566)
T ss_pred Hh---------------------------ccc-Cc-----h---hhHHHH-----------HHHHhCCCCCeEEEecCc-
Confidence 52 111 34 5 778888 999999999999998844
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
|+|+++ . +.. .+.|++.+.|||+
T Consensus 399 ---------------------pVRdvd-------------~---------------~~~---~~~~~~v~sNRGA----- 421 (566)
T COG1165 399 ---------------------PVRDVD-------------A---------------LGQ---LPAGYRVYSNRGA----- 421 (566)
T ss_pred ---------------------hhhhHH-------------H---------------hcc---CccCceeecCCCc-----
Confidence 555544 1 001 1255666777777
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
|||||+. +||++++.. ..+
T Consensus 422 ------------------~GIDG~v------------------------------------STA~Gi~~a-------~~~ 440 (566)
T COG1165 422 ------------------SGIDGTV------------------------------------STALGIARA-------TQK 440 (566)
T ss_pred ------------------cccchhH------------------------------------HHHhhhhhh-------cCC
Confidence 9999999 344444432 245
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCc--cc
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG--IY 972 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g--~~ 972 (1065)
+++ +++||+|| .+|.+.|+.. .+...|++|||+|||| ||
T Consensus 441 ptv---------------------------------~liGDLS~-lhD~NgLl~~-----k~~~~~ltIvv~NNnGGgIF 481 (566)
T COG1165 441 PTV---------------------------------ALIGDLSF-LHDLNGLLLL-----KKVPQPLTIVVVNNNGGGIF 481 (566)
T ss_pred ceE---------------------------------EEEechhh-hhccchHhhc-----CCCCCCeEEEEEeCCCceee
Confidence 677 99999999 8888888877 8889999999999998 99
Q ss_pred CCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 973 GGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.++++.. .+.++..|.++|++||+.+|+.||.+|.++.+++||+++++.+... .+.+||||++|++..++
T Consensus 482 ~~Lp~~~~--------~~~fe~~F~tPh~ldF~~la~~y~l~y~~~~s~~~l~~~~~~~~~~-~g~~viEvkt~r~~~~~ 552 (566)
T COG1165 482 SLLPQAQS--------EPVFERLFGTPHGLDFAHLAATYGLEYHRPQSWDELGEALDQAWRR-SGTTVIEVKTDRSDGAQ 552 (566)
T ss_pred eeccCCCC--------cchHHHhcCCCCCCCHHHHHHHhCccccccCcHHHHHHHHhhhccC-CCcEEEEEecChhHHHH
Confidence 99998632 2235667999999999999999999999999999999999999865 67899999999877665
Q ss_pred cchhh
Q psy14416 1053 PQNFS 1057 (1065)
Q Consensus 1053 ~~~~~ 1057 (1065)
.|+..
T Consensus 553 ~~q~l 557 (566)
T COG1165 553 LHQAL 557 (566)
T ss_pred HHHHH
Confidence 54433
|
|
| >KOG4166|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-67 Score=567.02 Aligned_cols=540 Identities=22% Similarity=0.324 Sum_probs=433.2
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
...++++.+.+.+.+++|++|||.||..++|+.+|+.++ .+++|.-|||++|++||.||+|.|||||||++|||||++|
T Consensus 89 vg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATN 168 (675)
T KOG4166|consen 89 VGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATN 168 (675)
T ss_pred cCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCccc
Confidence 367999999999999999999999999999999999775 6999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
.++.+++|..|++||+++||+.|+..+|.++||+.|.+.+-|+++||.+.+.+.+++++.|++||.+|.++|||||.+++
T Consensus 169 vvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 169 VVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred ccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCC---HHHHHHHHHHHHhCC
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPG---IAELKQASRLILEAK 500 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~v~~~ae~L~~Ak 500 (1065)
|.|+..+-.-.+ . |.. .+.|+-.+ .......++ ...+++++++|+.||
T Consensus 249 PKDvta~~l~~p-i---p~~----~~lPsn~~---------------------m~~~~~~~~~~v~~~i~~~a~Li~laK 299 (675)
T KOG4166|consen 249 PKDVTAQLLIPP-I---PQA----MRLPSNAY---------------------MSRMPKPPEDFVMSHIEQIARLISLAK 299 (675)
T ss_pred cHHHHHHHhcCC-c---hhh----hcCCchhh---------------------HhhCCCCchhhHHHHHHHHHHHHHhcc
Confidence 999876644221 0 000 01111000 001111223 367999999999999
Q ss_pred CcEEEEccCCCch-hHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccc---c----HHHHhhhcCCCEEEEeCCccccc
Q psy14416 501 APLVIIGKGAAYS-QAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV---S----AARTHALQNADLVLLLGARLNWI 572 (1065)
Q Consensus 501 rPvIlvG~g~~~~-~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~l---g----~~~~~al~~aDlVI~iG~~~~~~ 572 (1065)
||||.+|.|+..+ +....|.+|.|++++||.++.+|-|.++.++++.+ | ..++.+++++||||.+|.+++++
T Consensus 300 KPVlyvG~G~Ln~~d~p~lL~~fser~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDR 379 (675)
T KOG4166|consen 300 KPVLYVGGGCLNSSDGPRLLGRFSERTQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDR 379 (675)
T ss_pred CceEEeCcccccCCcchHHHHHHHHhhcCcceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccc
Confidence 9999999999765 55679999999999999999999999999998754 3 25788999999999999999986
Q ss_pred cccCCCccccCCCe---------EEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHH
Q psy14416 573 LHFGRAPRFKSNVK---------IIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKL 643 (1065)
Q Consensus 573 ~~~g~~~~~~~~~~---------iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~ 643 (1065)
.+ |.+..|.+.++ +||+|.+|..+++...+++.+++|+...|+.+...++.. ..+.+.+|+.++..
T Consensus 380 VT-Gn~s~FAp~Ar~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~----~~~~r~dW~~qin~ 454 (675)
T KOG4166|consen 380 VT-GNLSAFAPRARRAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNR----AEELRLDWRNQINV 454 (675)
T ss_pred cc-cchhhhChhhhhhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcc----cchhhhhHHHHHHH
Confidence 54 44455666666 999999999999999999999999999999988877632 12345668777665
Q ss_pred HHHhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCC-
Q psy14416 644 KCQTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP- 722 (1065)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP- 722 (1065)
++++..-...+. .....+ . ++.++. .|.+...
T Consensus 455 wK~~fP~sf~~~----------------------------tpGe~i-----k---PQ~vIk-----------~Ldk~t~d 487 (675)
T KOG4166|consen 455 WKQKFPLSFKEE----------------------------TPGEAI-----K---PQYVIK-----------VLDKLTDD 487 (675)
T ss_pred HHHhCCeeeecc----------------------------CCcccc-----C---hHHHHH-----------HHHHhccC
Confidence 544322111111 011112 4 556666 5555544
Q ss_pred --CcEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCC
Q psy14416 723 --VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 800 (1065)
Q Consensus 723 --~d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1065)
...||..+.|.+..|++++|.- . .|
T Consensus 488 ~~~kviitTGVGqHQMWAAqfy~w-----~------------------------------------------kP------ 514 (675)
T KOG4166|consen 488 TGRKVIITTGVGQHQMWAAQFYNW-----K------------------------------------------KP------ 514 (675)
T ss_pred cCceEEEeccccHHHHHHHHHhcc-----c------------------------------------------Cc------
Confidence 4789999999999998866541 0 11
Q ss_pred cccccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhh
Q psy14416 801 IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYAS 880 (1065)
Q Consensus 801 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 880 (1065)
+.|..+|. .|+| |+++++|+ +|+
T Consensus 515 -~~~~tSGG--------------------------LGtM----------------------------GfGLPAAI--GAs 537 (675)
T KOG4166|consen 515 -RQWLTSGG--------------------------LGTM----------------------------GFGLPAAI--GAS 537 (675)
T ss_pred -cceeecCC--------------------------cccc----------------------------ccCcchhh--ccc
Confidence 22222333 4555 99999999 999
Q ss_pred heeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCC
Q psy14416 881 IVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLP 960 (1065)
Q Consensus 881 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1065)
+|. |+..|| =+-||+|| .|+.+||+|+ ++.++|
T Consensus 538 VA~--------P~~iVi---------------------------------DIDGDaSF-~Mt~~ELat~-----rq~~~P 570 (675)
T KOG4166|consen 538 VAN--------PDAIVI---------------------------------DIDGDASF-IMTVQELATI-----RQENLP 570 (675)
T ss_pred ccC--------cccEEE---------------------------------eccCCcee-eeehHhhhhh-----hhcCCc
Confidence 999 999999 89999999 9999999999 999999
Q ss_pred EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEE
Q psy14416 961 VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSL 1040 (1065)
Q Consensus 961 ~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~l 1040 (1065)
|.|+|+||.- .|+-. +++.+++.....+. .-.+.||-++|+++|+++.||+..++|++.|++++.+ .+|+|
T Consensus 571 VKiLiLNNee--qGMVt-QWq~lFYe~rysHT-----hQ~nPnf~klA~AmGikalRV~K~edL~~k~keflsT-kGPvL 641 (675)
T KOG4166|consen 571 VKILILNNEE--QGMVT-QWQDLFYEARYSHT-----HQENPNFLKLAAAMGIKALRVTKKEDLREKIKEFLST-KGPVL 641 (675)
T ss_pred eEEEEecchh--hhhHH-HHHHHHHHhhhccc-----cccCccHHHHHHhcCCchheeehHHHHHHHHHHHhCC-CCCeE
Confidence 9999999963 12222 23444333332221 1235899999999999999999999999999999987 99999
Q ss_pred EEEEeCCCCCC
Q psy14416 1041 INILINPSADR 1051 (1065)
Q Consensus 1041 i~~~~~~~~~~ 1051 (1065)
+||.++..+-.
T Consensus 642 leV~v~~kehV 652 (675)
T KOG4166|consen 642 LEVIVPHKEHV 652 (675)
T ss_pred EEEEccCccce
Confidence 99999876654
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=697.11 Aligned_cols=573 Identities=14% Similarity=0.082 Sum_probs=412.5
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
..-+++|++.|+++||+++||+||+++++|++++.+ ++|++|.++||++|+|||+||||+||||+||+||+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 567899999999999999999999999999999965 4799999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhH------HHHHHHHHHHhhcCCCCEE
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLI------GQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i------~~~i~~A~~~A~~~~~GPV 419 (1065)
|||+||+.+++|||+||||+|.+.++++++|++||.++|+++|||++++++++++ ++.+++|++.|+++|||||
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPV 460 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPV 460 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999883 5899999999999999999
Q ss_pred EEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhC
Q psy14416 420 YLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499 (1065)
Q Consensus 420 ~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~A 499 (1065)
||+||+|.+..+............+ ..|+. ...|............+.++.+.+++++++|++|
T Consensus 461 hL~iP~~~pld~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A 524 (1655)
T PLN02980 461 HINCPFREPLDGSPTNWMSSCLKGL---DMWMS-------------NAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEA 524 (1655)
T ss_pred EEECccCCccccccccccccccccc---hhccc-------------CCCccccccccccccccccchhhHHHHHHHHHhC
Confidence 9999976533322110000000000 00000 0000000000000111235677899999999999
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCC-C------CCCCC--CCcccccHHH-------HhhhcCCCEEE
Q psy14416 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG-K------GVVPD--AHPNCVSAAR-------THALQNADLVL 563 (1065)
Q Consensus 500 krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~g-k------g~v~~--~hpl~lg~~~-------~~al~~aDlVI 563 (1065)
|||+||+|.++..+.+. ++.+|||++|+||++++++ + |.+|+ +||+++|... ...+.++|+||
T Consensus 525 kRPvIvaG~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl 603 (1655)
T PLN02980 525 KRGLLLIGAIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVI 603 (1655)
T ss_pred CCcEEEEcCCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEE
Confidence 99999999998655544 5689999999999999985 4 89999 8888888432 24467999999
Q ss_pred EeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHH
Q psy14416 564 LLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKL 643 (1065)
Q Consensus 564 ~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~ 643 (1065)
++|++++++...++...+.+ .++||||.|+..+++.+..+..|++|+..++++|.+.... .....|.+.++.
T Consensus 604 ~iG~rl~s~~~t~~~~~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~-------~~~~~w~~~~~~ 675 (1655)
T PLN02980 604 QIGSRITSKRVSQMLEKCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFP-------RRRSKWHGHLQA 675 (1655)
T ss_pred EeCCccccHHHHHHHHhCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCc-------chhHHHHHHHHH
Confidence 99999986544333322223 3599999999999999999999999999999988764321 112468777765
Q ss_pred HHHhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC
Q psy14416 644 KCQTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 723 (1065)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~ 723 (1065)
............. ....++ + +..+++ .|.+.||+
T Consensus 676 ~~~~~~~~~~~~~---------------------------~~~~~l-----~---~~~v~~-----------~L~~~Lp~ 709 (1655)
T PLN02980 676 LDGMVAQEISFQI---------------------------HAESSL-----T---EPYVAH-----------VISEALTS 709 (1655)
T ss_pred HHHHHHHHHHhhh---------------------------hcCCCc-----c---hHHHHH-----------HHHHhCCC
Confidence 5443322211000 001134 5 667888 99999999
Q ss_pred cEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCccc
Q psy14416 724 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 803 (1065)
Q Consensus 724 d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1065)
|.+|+.|+|+.++....+......+.. ..+ ..+++...| +.
T Consensus 710 d~ivv~d~g~~ird~~~~~~~~~~~~~------------------------------~~~--~~~~~~~~p-------~~ 750 (1655)
T PLN02980 710 DSALFIGNSMAIRDADMYGCSSENYSS------------------------------RIV--DMMLSAELP-------CQ 750 (1655)
T ss_pred CCeEEEECcHHHHHHHHcCCccccccc------------------------------ccc--ccccccccc-------cc
Confidence 999999998654321111000000000 000 000011111 00
Q ss_pred ccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEecccccc--ccccchhhhhh
Q psy14416 804 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY--GGFDETTYASI 881 (1065)
Q Consensus 804 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~ 881 (1065)
+.. + .+-.|.+|++ +++++ ||++
T Consensus 751 ~i~----------------------~-------------------------------~~~~G~mG~~G~lpaAI--Gaal 775 (1655)
T PLN02980 751 WIQ----------------------V-------------------------------AGNRGASGIDGLLSTAI--GFAV 775 (1655)
T ss_pred cce----------------------E-------------------------------EecCCccchhhhHHHHH--HHhh
Confidence 000 0 0111233664 34444 7776
Q ss_pred eeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccc--cCC
Q psy14416 882 VESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT--TVL 959 (1065)
Q Consensus 882 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~--~~~ 959 (1065)
+. +++|+ +++|||+| +|+.++|+|+ ++ +++
T Consensus 776 a~---------~r~Vv---------------------------------~i~GDGsF-~m~~~EL~Ta-----~r~~~~l 807 (1655)
T PLN02980 776 GC---------NKRVL---------------------------------CVVGDISF-LHDTNGLSIL-----SQRIARK 807 (1655)
T ss_pred cC---------CCCEE---------------------------------EEEehHHH-HhhhhHHHHh-----hcccCCC
Confidence 64 46788 99999999 9999999999 87 499
Q ss_pred CEEEEEEcCCc--ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCC
Q psy14416 960 PVILVIVNNNG--IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTR 1037 (1065)
Q Consensus 960 ~~~~~v~nn~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 1037 (1065)
|++|||+||+| ||+.++...... . ..+...+.+.+++||.++|++||++|.+|++.+||+++|+++++. ++
T Consensus 808 pi~iVV~NN~gggi~~~l~~~~~~~-----~-~~~~~~~~~~~~~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~~-~~ 880 (1655)
T PLN02980 808 PMTILVINNHGGAIFSLLPIAKRTE-----P-RVLNQYFYTSHDISIENLCLAHGVRHLHVGTKSELEDALFTSQVE-QM 880 (1655)
T ss_pred CEEEEEEeCCCcHhhhcCccCCCCc-----c-hhHHHHhcCCCCCCHHHHHHHcCCceeecCCHHHHHHHHHHhhcc-CC
Confidence 99999999998 455443221000 0 000112334467999999999999999999999999999999976 89
Q ss_pred CEEEEEEeCCCCCCCcchhhhh
Q psy14416 1038 PSLINILINPSADRKPQNFSWL 1059 (1065)
Q Consensus 1038 ~~li~~~~~~~~~~~~~~~~~~ 1059 (1065)
|+||||.++++++.+.+...|.
T Consensus 881 p~lIEV~t~~~~~~~~~~~~~~ 902 (1655)
T PLN02980 881 DCVVEVESSIDANAAFHSTLRK 902 (1655)
T ss_pred CEEEEEecChhhhHHHHHHHHH
Confidence 9999999999888776555443
|
|
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=549.74 Aligned_cols=519 Identities=19% Similarity=0.264 Sum_probs=416.7
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++.+++|+++|++.||+++||+||+.+++|++.+.. +++||+.|.||.+|+||||||||.+| .+++++|.|.|.+.
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGELS 80 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGELS 80 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchhh
Confidence 45789999999999999999999999999999999966 57999999999999999999999999 79999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCC-------Ccc-ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCC
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-------QEC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 415 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~-------Q~i-dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~ 415 (1065)
+++||+.+|++++|||+|+|-+++..+..+.+ -++ .+.+|+++++.....+++.+.+++.|+|+++.+...+
T Consensus 81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~ 160 (557)
T COG3961 81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQR 160 (557)
T ss_pred hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764332211 122 3679999999999999999999999999999998665
Q ss_pred CCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHH
Q psy14416 416 PGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495 (1065)
Q Consensus 416 ~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~ 495 (1065)
.||||.+|.|+...+++.+ .. |... ......+....+.++.++++
T Consensus 161 -RPvYI~lP~dva~~~~~~p-~~--Pl~~-------------------------------~~~~sd~e~~~e~i~~i~~l 205 (557)
T COG3961 161 -RPVYIGLPADVADLPIEAP-LT--PLDL-------------------------------QLKTSDPEALSEVIDTIAEL 205 (557)
T ss_pred -CCeEEEcchHHhcCcCCCC-CC--cccc-------------------------------ccCCCCHHHHHHHHHHHHHH
Confidence 5999999999998887654 12 2211 11112222335678888999
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc--------HHHHhhhcCCCEEEEeCC
Q psy14416 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS--------AARTHALQNADLVLLLGA 567 (1065)
Q Consensus 496 L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg--------~~~~~al~~aDlVI~iG~ 567 (1065)
|+++|||+|++|..+.+.+..+++++|++++++|+++++||||.++|.||.|+| ...+++++.||+||.+|+
T Consensus 206 I~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~ 285 (557)
T COG3961 206 INKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGV 285 (557)
T ss_pred HhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEece
Confidence 999999999999999988999999999999999999999999999999999998 245778899999999999
Q ss_pred ccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHh
Q psy14416 568 RLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 647 (1065)
Q Consensus 568 ~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~ 647 (1065)
.+++..+.+|..++++ .++|+++++...+.......+ ..+++|++|.+.+..+.....
T Consensus 286 ~ltD~~Tg~Ft~~~~~-~~~i~~~~~~v~I~~~~f~~l----~m~~~L~~L~~~i~~~~~~~~----------------- 343 (557)
T COG3961 286 LLTDFNTGGFTYQYKP-ANIIEIHPDSVKIKDAVFTNL----SMKDALQELAKKIDKRNLSAP----------------- 343 (557)
T ss_pred EEeeccccceeeecCc-ccEEEeccCeeEecccccCCe----eHHHHHHHHHHHhhhcccCCC-----------------
Confidence 9999999999877655 688999999877754443333 348899999888763211000
Q ss_pred hhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEE
Q psy14416 648 NRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 727 (1065)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~il 727 (1065)
..+..... ++........|+ + +..+++ ++...|.++.+|
T Consensus 344 ~~~~~~~~----------------------p~~~~~~~~~pL-----t---q~~~w~-----------~~~~fl~p~dvi 382 (557)
T COG3961 344 PVAYPART----------------------PPTPYPPANEPL-----T---QEWLWN-----------TVQNFLKPGDVI 382 (557)
T ss_pred CccCCCCC----------------------CCCCCCCCCCcc-----c---HHHHHH-----------HHHhhCCCCCEE
Confidence 00000000 001111345678 8 888999 999999999999
Q ss_pred EECCCC-cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccC
Q psy14416 728 VNNNGI-YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 806 (1065)
Q Consensus 728 v~d~G~-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1065)
++|.|. +++- .+..+|
T Consensus 383 iaetGtS~FG~---------------------------------------------------~~~~lP------------ 399 (557)
T COG3961 383 IAETGTSFFGA---------------------------------------------------LDIRLP------------ 399 (557)
T ss_pred EEccccccccc---------------------------------------------------eeeecC------------
Confidence 999984 1111 122233
Q ss_pred cccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccc
Q psy14416 807 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 886 (1065)
Q Consensus 807 ~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 886 (1065)
.|+ . -+++..||++||++|+++ ||++|.
T Consensus 400 ~~~--------------------------~---------------------~i~Q~lWGSIG~t~pAal--Ga~~A~--- 427 (557)
T COG3961 400 KGA--------------------------T---------------------FISQPLWGSIGYTLPAAL--GAALAA--- 427 (557)
T ss_pred CCC--------------------------e---------------------EEcccchhhcccccHhhh--hhhhcC---
Confidence 111 1 146788999999999999 999999
Q ss_pred cccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEE
Q psy14416 887 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 966 (1065)
Q Consensus 887 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 966 (1065)
|+++|| +++||||| |++.||+.++ .|.+++.+|+|+
T Consensus 428 -----~drR~I---------------------------------L~iGDGs~-QlTvQEiStm-----iR~gl~p~ifvl 463 (557)
T COG3961 428 -----PDRRVI---------------------------------LFIGDGSL-QLTVQEISTM-----IRWGLKPIIFVL 463 (557)
T ss_pred -----CCccEE---------------------------------EEEcCchh-hhhHHHHHHH-----HHcCCCcEEEEE
Confidence 999999 99999999 9999999999 999999999999
Q ss_pred cCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCe----EeeCCHHHHHHHHHHHHhcCCCCEEEE
Q psy14416 967 NNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDG----YLCTTVPQIKQAMKKCLQTTTRPSLIN 1042 (1065)
Q Consensus 967 nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~l~~~~~~~~~~~~~~~li~ 1042 (1065)
||+|+ . .+. .+.....+++..++|||.++.++||++. .++++.++|+.+++.+.+..+++.+||
T Consensus 464 NN~GY-T------IEr-----~IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~lIE 531 (557)
T COG3961 464 NNDGY-T------IER-----AIHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANNDRIRLIE 531 (557)
T ss_pred cCCCc-E------EEe-----hhcCCCcCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCCceEEEE
Confidence 99993 2 111 0122345688889999999999999973 578999999999999998878999999
Q ss_pred EEeCCCCCCCc
Q psy14416 1043 ILINPSADRKP 1053 (1065)
Q Consensus 1043 ~~~~~~~~~~~ 1053 (1065)
|.+++.+..+.
T Consensus 532 v~lp~~D~P~~ 542 (557)
T COG3961 532 VMLPVLDAPEL 542 (557)
T ss_pred EecCcccCCHH
Confidence 99977666543
|
|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=553.71 Aligned_cols=415 Identities=16% Similarity=0.149 Sum_probs=340.0
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 347 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a 347 (1065)
.+++|++.|+++||+|+||+||+++.+|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 3689999999999999999999999999999954 589999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh------HHHHHHHHHHHhhcCCCCEEEE
Q psy14416 348 MANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 348 v~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~------i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+++|+.+++|||+|+|+++....+++++|++||.++|+++|||+.+++++++ +++.+++|++.|++++||||||
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++..+.+..... + .|+.. + ..........++++.+++++++|++|||
T Consensus 162 ~iP~dv~~~~~~~~~~~--~-------~~~~~---------------~----~~~~~~~~~~~~~~~i~~~~~~l~~Akr 213 (432)
T TIGR00173 162 NVPFREPLYPDPLLQPL--Q-------PWLRS---------------G----VPTVTTGPPVLDPESLDELWDRLNQAKR 213 (432)
T ss_pred eCCCCCCCCCCCccccc--c-------ccccc---------------c----cccccCCCCCCChhhHHHHHHHHhhcCC
Confidence 99999965543211000 0 00000 0 0000111223567789999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHH--------HHhhhcCCCEEEEeCCcccccc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA--------RTHALQNADLVLLLGARLNWIL 573 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~--------~~~al~~aDlVI~iG~~~~~~~ 573 (1065)
|+|++|.++..+ +.++|.+|+|++++||++++++|+.+ ++| +++|.. ..+++ ++|+||.+|+++.++.
T Consensus 214 Pvi~~G~g~~~~-a~~~l~~lae~~~~PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~ 289 (432)
T TIGR00173 214 GVIVAGPLPPAE-DAEALAALAEALGWPLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKR 289 (432)
T ss_pred cEEEEcCCCcHH-HHHHHHHHHHhCCCeEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhH
Confidence 999999999865 78999999999999999999999999 778 888732 23456 9999999999998776
Q ss_pred ccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhccc
Q psy14416 574 HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKL 653 (1065)
Q Consensus 574 ~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 653 (1065)
+.+|. +.++.++||||.|+..+++++..++.|++|++.+|++|.+.++. ....|.+.|.+..+++....+
T Consensus 290 ~~~~~--~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 359 (432)
T TIGR00173 290 LRQWL--ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLKN--------PDAAWLDRWLEAEAKAREALR 359 (432)
T ss_pred HHHHH--hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccCC--------CChHHHHHHHHHHHHHHHHHH
Confidence 66553 23457899999999999999999999999999999999888752 234687777776655444332
Q ss_pred chhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCC
Q psy14416 654 PVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI 733 (1065)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~ 733 (1065)
+.. ...|+ + +..+++ .|.+.+|+|.+|+.|+|+
T Consensus 360 ~~~----------------------------~~~~i-----~---p~~~~~-----------~l~~~lp~d~ivv~d~g~ 392 (432)
T TIGR00173 360 EVL----------------------------AEEPL-----S---ELSLAR-----------ALSQLLPEGAALFVGNSM 392 (432)
T ss_pred HHh----------------------------ccCCc-----c---HHHHHH-----------HHHHhCCCCCeEEEECCH
Confidence 220 12345 6 778889 999999999999999999
Q ss_pred cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccc
Q psy14416 734 YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 780 (1065)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~ 780 (1065)
+.+|...|+.. ..-|.+.+.-.+.|.+|.++++++|+++
T Consensus 393 ~~~~~~~~~~~--------~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 393 PIRDLDTFAQP--------PDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred HHHHHHhcCCc--------CCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 99997755432 1135666666666888888888877654
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=489.23 Aligned_cols=550 Identities=22% Similarity=0.263 Sum_probs=433.0
Q ss_pred cCccHHHHHHHHHHhcCc---------eEEEeecC-CchhhhHHHhhcC--CceEEEccCCchHHHHHHHHHHHhCCCeE
Q psy14416 265 EELSANQVIAQALKFQGI---------EYVFGIVG-IPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGV 332 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV---------~~vfg~pG-~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~g~ar~tgkpgv 332 (1065)
..++.+++|++.|.+.=+ .-+|.+-| ..+..+-+||++. -+.++..+||++-+.+|.+|+|+..|-.+
T Consensus 5 vRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~ 84 (617)
T COG3962 5 VRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRI 84 (617)
T ss_pred ehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhcee
Confidence 467899999999987522 23445555 4456788899653 49999999999999999999998877666
Q ss_pred EEEe--ccccccccccccccccccCcceEeecCCCccCCCCCCCCCccC--------hhhhhcccccEEeeCCChhhHHH
Q psy14416 333 CLVV--SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP--------QVELARPYCKYSARPPNIHLIGQ 402 (1065)
Q Consensus 333 ~~~t--sGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~id--------Q~~l~~~~~k~s~~l~~~~~i~~ 402 (1065)
+.|| .|||++|++++.+-|..+|+|+|+|-||.-...+...-+|.+. -.+.|+|++||.-+++.||++..
T Consensus 85 ~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~s 164 (617)
T COG3962 85 YAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMS 164 (617)
T ss_pred eEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHH
Confidence 6665 4999999999999999999999999999876554433344433 34789999999999999999999
Q ss_pred HHHHHHHHhhcC-CCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCC
Q psy14416 403 HVEKAVRLSTFG-KPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTL 481 (1065)
Q Consensus 403 ~i~~A~~~A~~~-~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1065)
.+.||++....+ ..|||.|.+|.|++.+.++.++ + ||.+ +.....+
T Consensus 165 al~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~----------------~---------FF~~--------rv~~~rR 211 (617)
T COG3962 165 ALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPE----------------S---------FFEK--------RVWRIRR 211 (617)
T ss_pred HHHHHHHHhCChhhcCceEEEechhhhhhhcCCcH----------------H---------hhhh--------hhhhccC
Confidence 999999998754 6899999999999887765322 1 1111 1223456
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HHHHh
Q psy14416 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTH 554 (1065)
Q Consensus 482 ~~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~~~~ 554 (1065)
+.|++.+++.++++|+.+|||+||+|+|+..+++.++|++|+|..|+||+.|--||+.++.+||+.+| .+.+.
T Consensus 212 ~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~ 291 (617)
T COG3962 212 PPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANR 291 (617)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999998 35677
Q ss_pred hhcCCCEEEEeCCccccccccCCCcccc-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCC
Q psy14416 555 ALQNADLVLLLGARLNWILHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSA 633 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~~~g~~~~~~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~ 633 (1065)
+..+|||||.+|+++.++.+..|.. |. ++.+++.++..+ +|....-...+++|++..|++|.+.|.. +..
T Consensus 292 ~A~~ADlVigiGTR~~DFTTgS~al-F~~~~~k~l~lNV~~--~da~K~~a~~lvaDAr~~L~~L~~~L~g------~~~ 362 (617)
T COG3962 292 AAEEADLVIGIGTRLQDFTTGSKAL-FKNPGVKFLNLNVQP--FDAYKHDALPLVADARAGLEALSEALGG------YRT 362 (617)
T ss_pred hhhhcCEEEEecccccccccccHHH-hcCCCceEEEeeccc--ccccccccceehhHHHHHHHHHHHHhcc------ccc
Confidence 8899999999999999877766643 43 667888887766 4444446788999999999999999983 344
Q ss_pred CchHHHHHHHHHHhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccc
Q psy14416 634 TSPWWQELKLKCQTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 713 (1065)
Q Consensus 634 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
...|.++..+..+.|.....+.. ++..+ ....| + +..++.
T Consensus 363 ~~~w~~~~~~~~~~w~~~~~~~~--------a~~~~--------------lnt~p------t---q~~vig--------- 402 (617)
T COG3962 363 AAGWTDERERLKAAWDAEADAPT--------AKNHF--------------LNTLP------T---QTQVIG--------- 402 (617)
T ss_pred chhHHHHHHHhhhhhhhhccccc--------ccccc--------------cccCc------c---chhHHH---------
Confidence 56688888777666665544330 00000 01222 3 567777
Q ss_pred hhhhhhcCCCcEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceee
Q psy14416 714 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 793 (1065)
Q Consensus 714 ~g~L~~~LP~d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1065)
.+++..+++++|+...|++++..+++|.. . ....++|++|
T Consensus 403 --av~~~~~~~svvvcAAGsLPGdLhkLW~~-----~-----------------------~p~~YH~EYg---------- 442 (617)
T COG3962 403 --AVQRTISDDSVVVCAAGSLPGDLHKLWRA-----G-----------------------VPGTYHLEYG---------- 442 (617)
T ss_pred --HHHhhcCCCcEEEEeCCCCcHHHHHHhcc-----C-----------------------CCCceeeeec----------
Confidence 99999999999999999999988887774 1 1445778888
Q ss_pred eeecCCCcccccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccc
Q psy14416 794 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 873 (1065)
Q Consensus 794 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 873 (1065)
|.|| |+-...
T Consensus 443 ------------------------------------------fSCM----------------------------GYEiaG 452 (617)
T COG3962 443 ------------------------------------------FSCM----------------------------GYEIAG 452 (617)
T ss_pred ------------------------------------------cccc----------------------------cccccc
Confidence 6777 555555
Q ss_pred cchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccC
Q psy14416 874 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 953 (1065)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~ 953 (1065)
++ +++++. |++.|+ .++||||| +|..+||.|.
T Consensus 453 ~l--G~K~a~--------pdreV~---------------------------------vmVGDGSy-mMlnSEL~Ts---- 484 (617)
T COG3962 453 GL--GAKAAE--------PDREVY---------------------------------VMVGDGSY-MMLNSELATS---- 484 (617)
T ss_pred cc--ccccCC--------CCCeEE---------------------------------EEEcccch-hhhhHHHHHH----
Confidence 55 777777 999999 99999999 9999999999
Q ss_pred ccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCC---CCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHH
Q psy14416 954 EVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPT---SLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKK 1030 (1065)
Q Consensus 954 ~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 1030 (1065)
+.+++++++++++|.| |+.+..-. .-...+.+.+..... ...+.+||.+.|+.||++.++|.|.+||+.||++
T Consensus 485 -v~~g~Ki~Vvl~DN~G-yGCIn~LQ--m~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i~eL~aAL~~ 560 (617)
T COG3962 485 -VMLGKKIIVVLLDNRG-YGCINRLQ--MATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTIEELEAALAD 560 (617)
T ss_pred -HHcCCeEEEEEECCCC-cchhhhhh--hhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecCCHHHHHHHHHH
Confidence 9999999999999999 55433311 111112221111111 3367899999999999999999999999999999
Q ss_pred HHhcCCCCEEEEEEeCCCCCCCcchhhhh
Q psy14416 1031 CLQTTTRPSLINILINPSADRKPQNFSWL 1059 (1065)
Q Consensus 1031 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 1059 (1065)
+.++ ++++||+|.++|........-||-
T Consensus 561 Ak~~-~~ttvi~I~t~P~~~t~~g~~WWd 588 (617)
T COG3962 561 AKAS-DRTTVIVIDTDPKTTTDDGGSWWD 588 (617)
T ss_pred HHhC-CCCEEEEEecCCccccCCCCceee
Confidence 9987 999999999999999887777774
|
|
| >KOG1184|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=500.19 Aligned_cols=526 Identities=19% Similarity=0.267 Sum_probs=411.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++.+++|+++|.+.||+++||+||+.++.|++-++. +++|++.|.+|.+|+|+||||||.+| .++|++|.|.|.+.+
T Consensus 3 ~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 3 PITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELSA 81 (561)
T ss_pred ceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhhh
Confidence 5789999999999999999999999999999999976 57999999999999999999999999 899999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCC--C-----cc-ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGF--Q-----EC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~--Q-----~i-dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||+.||.+++|||+|+|-+++...+.+.+ + ++ -+.+|++.++.++..+.+.+++++.||+|++.|....
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~- 160 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKES- 160 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999865443321 1 11 2679999999999999999999999999999997543
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
.||||.+|.|+...+++...+.+.|..+ .+.+.......+.++.+++++
T Consensus 161 rPVYi~iP~n~~~~~~~~~~l~~~p~~~-------------------------------~~~~s~~e~~~~~v~~i~e~i 209 (561)
T KOG1184|consen 161 KPVYIGVPANLADLPVPAFGLLPVPLDL-------------------------------SPKPSNKEGLEEAVDAILELI 209 (561)
T ss_pred CCeEEEeecccccCcCCcccCCCCCccc-------------------------------CCCCCcHHHHHHHHHHHHHHh
Confidence 5899999999998888766433333221 222333344467888999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
.++++|+|++|...++....++..+|++++++|++.++|+||.++++||.|.|. ...+.++.+|+||.+|+.
T Consensus 210 ~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~ 289 (561)
T KOG1184|consen 210 NKAKKPVILGDPKLRRAKAESAFVELADATGFPVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPL 289 (561)
T ss_pred hhccCCeeeccccccHHHHHHHHHHHHHhhCCCeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEeccc
Confidence 999999999999888888899999999999999999999999999999999883 456788999999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+++..+.+|.... ++.++++++.|...+.......+ +.+.+|+.|+++++....++. . ..
T Consensus 290 ~sd~ss~~~~~~~-k~~~~i~~~~d~v~i~~~~f~~v----~mk~~l~~Lak~I~~~~~~~~--------~-------y~ 349 (561)
T KOG1184|consen 290 FNDYSSGGFSYLY-KKKNAIEFHSDRVKIRNATFGGV----LMKDFLQELAKRIKKNKTSYE--------N-------YV 349 (561)
T ss_pred ccccccceeEeec-CccceEEEecceEEeccccccce----eHHHHHHHHHHhhcccccchh--------c-------cc
Confidence 9998888886544 46788989988765543211122 568999999998863211110 0 00
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
+...... .+ -+.....++ + .-.+++ +++..+.+.++++
T Consensus 350 ~~~~~~~----------------~~-------~~~~~~~~l-----~---~~~~~~-----------~~~~~l~~~d~v~ 387 (561)
T KOG1184|consen 350 RIPVPEP----------------KP-------LACPPNAPL-----R---QEWMWN-----------HIQKFLSSGDVVI 387 (561)
T ss_pred ccCCCCC----------------CC-------CCCCCcchh-----h---HHHHHH-----------HHHhhcCCCceEE
Confidence 0011000 00 000123344 4 555677 8999999999999
Q ss_pred ECCCC-cCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCc
Q psy14416 729 NNNGI-YGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 807 (1065)
Q Consensus 729 ~d~G~-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1065)
.+.|. -++|. +..+| .
T Consensus 388 ~ETG~S~F~~~---------------------------------------------------~~~fP------------~ 404 (561)
T KOG1184|consen 388 AETGDSWFGIN---------------------------------------------------QTKFP------------K 404 (561)
T ss_pred Eecccceecce---------------------------------------------------eeccc------------c
Confidence 99874 11111 11122 1
Q ss_pred ccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccc
Q psy14416 808 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 887 (1065)
Q Consensus 808 g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 887 (1065)
|+ . -.+++.|+++||+.|+++ +++++.
T Consensus 405 g~--------------------------~---------------------~~~q~~wgsIG~svga~l--G~a~a~---- 431 (561)
T KOG1184|consen 405 GC--------------------------G---------------------YESQMQWGSIGWSVGATL--GYAQAA---- 431 (561)
T ss_pred cc--------------------------c---------------------eEEEEEEeeccccchhhh--hhhhcc----
Confidence 11 1 135788999999999999 888888
Q ss_pred ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEc
Q psy14416 888 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 967 (1065)
Q Consensus 888 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n 967 (1065)
|+++|| +++||||| |++.|+++++ .|.++|.+|+++|
T Consensus 432 ----~e~rvi---------------------------------lfiGDGs~-qlTvQeiStm-----ir~gl~~~if~~N 468 (561)
T KOG1184|consen 432 ----PEKRVI---------------------------------LFIGDGSF-QLTVQEISTM-----IRWGLKPIIFLIN 468 (561)
T ss_pred ----CCceEE---------------------------------EEecCccc-eeeHHHHHHH-----HhcCCCcEEEEEe
Confidence 889999 99999999 9999999999 9999999999999
Q ss_pred CCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC-----eEeeCCHHHHHHHHHHHH-hcCCCCEEE
Q psy14416 968 NNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD-----GYLCTTVPQIKQAMKKCL-QTTTRPSLI 1041 (1065)
Q Consensus 968 n~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~l~~~~~~~~-~~~~~~~li 1041 (1065)
|+|+.. + . +..+ .+ +....+|||.++.++||.. .+++.+.+|+.++.+..+ +..+++.||
T Consensus 469 N~GYTI---E----~-----~IH~-~~-Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~li 534 (561)
T KOG1184|consen 469 NGGYTI---E----V-----EIHD-GP-YNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDKIRLI 534 (561)
T ss_pred CCceEE---E----E-----eecC-CC-ccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCceEEE
Confidence 999422 0 0 1122 23 7777889999999999986 478999999999999887 555889999
Q ss_pred EEEeCCCCCCCcchhhhhH
Q psy14416 1042 NILINPSADRKPQNFSWLT 1060 (1065)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~ 1060 (1065)
||.++..+..+. -..|-.
T Consensus 535 Ev~l~~~D~p~~-L~~~~~ 552 (561)
T KOG1184|consen 535 EVILPVDDAPKE-LLEWGS 552 (561)
T ss_pred EEecCcccChHH-HHHHHH
Confidence 999987776544 444543
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=467.20 Aligned_cols=543 Identities=19% Similarity=0.265 Sum_probs=440.1
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHH-hCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYL-TKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~-tgkpgv~~~tsGpG~~ 342 (1065)
.+|...++-+..|++.||+..||+||..+.|++.+|++. +|+.+..||-..|++||.||.|+ .|..|+|+-||||+-+
T Consensus 2 akmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagt 81 (592)
T COG3960 2 AKMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT 81 (592)
T ss_pred cchhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCcc
Confidence 356777888889999999999999999999999999876 59999999999999999999997 5899999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
..++|++.|..|.+|+++|||+.|+.......||..|...+.+|++||...+..|..++.++++||....++|||||.|+
T Consensus 82 dmitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlid 161 (592)
T COG3960 82 DMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLID 161 (592)
T ss_pred chhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEe
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Q psy14416 423 FPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrP 502 (1065)
+|+|++..+++-+... + . +.+...+.......++++.+|..++||
T Consensus 162 lp~dvq~aeiefd~d~---y-------------------------e-------pl~~~kpaatr~qaekalaml~~aerp 206 (592)
T COG3960 162 LPFDVQVAEIEFDPDM---Y-------------------------E-------PLPVYKPAATRVQAEKALAMLIQAERP 206 (592)
T ss_pred cccceEEEEEecCccc---c-------------------------C-------cCCcCCchhHHHHHHHHHHHHhhccCc
Confidence 9999998877533211 0 0 112222333456778899999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 503 vIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
+|++|+|....++.+.+.+|||.+|+||+.|.||-|++|++||+..|+ +.+..+..+|+|+-+|.+...+.
T Consensus 207 livagggiinadaa~l~~efael~gvpviptlmgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrh- 285 (592)
T COG3960 207 LIVAGGGVINADAAALLQEFAELTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRH- 285 (592)
T ss_pred EEEecCceecccHHHHHHHHHHHcCCcccchhccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcc-
Confidence 999999999889999999999999999999999999999999998884 34556779999999999987654
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.+....+.+..+.||||+.|..+++.+.+|+.|+.|+.+.|+.+++...+.+.....+.+..|.+.++++++...+.. .
T Consensus 286 tgsv~vyt~gr~fihvdieptqigrvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkt-h 364 (592)
T COG3960 286 TGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKT-H 364 (592)
T ss_pred cCceeeeecCceEEEEeccccccceeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhc-c
Confidence 344445567789999999999999999999999999999999988765433333344567788887776543322211 1
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
-+..|+ . ++.+++ ++++..+.|...++-.|.+
T Consensus 365 -----------------------------fd~vp~-----k---pqrvye-----------emn~~fgrd~~yvstigls 396 (592)
T COG3960 365 -----------------------------FDNVPV-----K---PQRVYE-----------EMNKAFGRDVCYVTTIGLS 396 (592)
T ss_pred -----------------------------cccCCC-----C---HHHHHH-----------HHHhhcCCceeEEEeccHH
Confidence 234567 7 889999 9999999999888876532
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..- + -+++.+..| ++|.|+|.
T Consensus 397 qia---------------------------------------------~--aqflhv~~p-------r~wincgq----- 417 (592)
T COG3960 397 QIA---------------------------------------------A--AQFLHVFKP-------RHWINCGQ----- 417 (592)
T ss_pred HHh---------------------------------------------h--hhhhhhcCC-------cceeecCc-----
Confidence 111 1 234556677 88999988
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
-|.+ ||.+++++ +...+. |.+
T Consensus 418 ---------------------agpl----------------------------gwtipaal--gv~~ad--------p~r 438 (592)
T COG3960 418 ---------------------AGPL----------------------------GWTIPAAL--GVCAAD--------PKR 438 (592)
T ss_pred ---------------------cCCc----------------------------ccccchhh--ceeecC--------CCC
Confidence 5555 88888777 666666 999
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
.|+ .+.||--| +|..-+|+-- .+.++|-+-|++||. |-|
T Consensus 439 ~vv---------------------------------alsgdydf-qfmieelavg-----aq~k~pyihv~vnna--ylg 477 (592)
T COG3960 439 NVV---------------------------------AISGDYDF-QFLIEELAVG-----AQFKIPYIHVLVNNA--YLG 477 (592)
T ss_pred ceE---------------------------------EeecCchH-HHHHHHHhhh-----hcccCceEEEEecch--HHH
Confidence 999 99999999 9999999998 999999999999994 333
Q ss_pred CchhhHhHHhh----cCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHH---HhcCCCCEEEEEEeCC
Q psy14416 975 FDEATYASIVE----SGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKC---LQTTTRPSLINILINP 1047 (1065)
Q Consensus 975 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~---~~~~~~~~li~~~~~~ 1047 (1065)
+.....+.+-. +..++....+...+-++|.-++++.+||+..+|.+++|+..|++++ ++....|+++|+++++
T Consensus 478 lirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 478 LIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHHH
Confidence 33221221111 1112222333455678999999999999999999999999999876 3444789999999876
Q ss_pred CCCC
Q psy14416 1048 SADR 1051 (1065)
Q Consensus 1048 ~~~~ 1051 (1065)
-.+.
T Consensus 558 vtni 561 (592)
T COG3960 558 VTNI 561 (592)
T ss_pred hhcc
Confidence 5543
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=503.13 Aligned_cols=296 Identities=36% Similarity=0.537 Sum_probs=263.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
+||++|+|++.|+++||++|||+||+.+++++++|.+.+|++|.+|||++|+|||+||+|+|||||||++|+|||++|++
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc-------
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR------- 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP------- 160 (1065)
+||++|+.|++|||+||||.++...+++.|||.|+..|+++++||++++.+++++++.+++|++.|.++||||
T Consensus 81 tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 81 TGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred HHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 161 Dv~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~ 240 (550)
T COG0028 161 DVLAAEAEEPGPEPAILPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGA 240 (550)
T ss_pred hHhhcccccccccccccccCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCcCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 241 ~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD~~~~ 320 (550)
T COG0028 241 VPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTGYSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKAT 320 (550)
T ss_pred CCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccchhhhCCcCCEEEEeCChHHhCCCCCCCeeEeccHHHH
Confidence
Q ss_pred ----------------------------------------------------------------------cccccCCCcc
Q psy14416 161 ----------------------------------------------------------------------SLLLNNLPRH 170 (1065)
Q Consensus 161 ----------------------------------------------------------------------~~l~~~~p~~ 170 (1065)
.++....|++
T Consensus 321 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~~~~~~p~~ 400 (550)
T COG0028 321 LEALLEELKPERAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRR 400 (550)
T ss_pred HHHHHHhhhhcchHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHhcccCCCCc
Confidence 4455678999
Q ss_pred ccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhh
Q psy14416 171 RLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAW 250 (1065)
Q Consensus 171 ~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~ 250 (1065)
++.++.+|+||+|+|+|+||+++ .|+|+||+++|||||+|++|||+|++||++|+++||+||++| ||.+ +|
T Consensus 401 ~~~s~~~GtMG~glPaAIGAkla----~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~--g~v~---~~ 471 (550)
T COG0028 401 FLTSGGLGTMGFGLPAAIGAKLA----APDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGY--GMVR---QW 471 (550)
T ss_pred EEcCCCCccccchHHHHHHHHhh----CCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECCcc--ccch---HH
Confidence 99999999999999999999999 699999999999999999999999999999999999999976 9988 88
Q ss_pred hhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCC
Q psy14416 251 LDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKP 330 (1065)
Q Consensus 251 ~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkp 330 (1065)
|+..+..+.......+.+ ...++++ ||+.|-++...- |.. .|+--+..+++|
T Consensus 472 q~~~~~~~~~~~~~~~~~-f~klAea---------~G~~g~~v~~~~---------------el~---~al~~al~~~~p 523 (550)
T COG0028 472 QELFYGGRYSGTDLGNPD-FVKLAEA---------YGAKGIRVETPE---------------ELE---EALEEALASDGP 523 (550)
T ss_pred HHHhcCCCcceeecCCcc-HHHHHHH---------cCCeeEEeCCHH---------------HHH---HHHHHHHhCCCC
Confidence 888877653333334444 8888988 999997765321 111 122344557777
Q ss_pred eEEEEecccc
Q psy14416 331 GVCLVVSGPG 340 (1065)
Q Consensus 331 gv~~~tsGpG 340 (1065)
.++-+.--|-
T Consensus 524 ~lidv~id~~ 533 (550)
T COG0028 524 VLIDVVVDPE 533 (550)
T ss_pred EEEEEEecCc
Confidence 7766654443
|
|
| >KOG1185|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=418.71 Aligned_cols=308 Identities=54% Similarity=0.833 Sum_probs=264.3
Q ss_pred CcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 3 EDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 3 ~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
++.++++++++.+++.|+++||+++||+.|.++.+|..+....||+||.+|||++|+|||++|+++|||||||++++|||
T Consensus 8 ~~~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPG 87 (571)
T KOG1185|consen 8 VDKASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPG 87 (571)
T ss_pred ccccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCCh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc--
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR-- 160 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP-- 160 (1065)
++|+++|+++|+.+++|||+|.|..+....++++|||+||.++++++||++.+++++++|+..+++|++.|++|+|||
T Consensus 88 l~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~y 167 (571)
T KOG1185|consen 88 LTHALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVY 167 (571)
T ss_pred HHHHHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 168 vD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glP 247 (571)
T KOG1185|consen 168 VDLPADVVLPSKMVEKEIDVSEPQPPIPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLP 247 (571)
T ss_pred EecccceeeeecccccccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 248 flptpMgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~ 327 (571)
T KOG1185|consen 248 FLPTPMGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDVAIQ 327 (571)
T ss_pred cccCcccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 328 gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ilVsEGant 407 (571)
T KOG1185|consen 328 GDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDTILVSEGANT 407 (571)
T ss_pred ecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCcEEEecCCcc
Confidence
Q ss_pred -----cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEc
Q psy14416 161 -----SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVN 235 (1065)
Q Consensus 161 -----~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~N 235 (1065)
.+++...|++++..++||+||-|+|+|++|+++ .|+++|+|+-||++|.|+.+|++|++||+||+++||+|
T Consensus 408 mdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGfSaME~ET~vR~~Lpvv~vV~N 483 (571)
T KOG1185|consen 408 MDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALA----APDRKVVCVEGDSAFGFSAMELETFVRYKLPVVIVVGN 483 (571)
T ss_pred hhhhhhhccCCCcccccCCccccccccchhHHHHHHhh----CCCCeEEEEecCcccCcchhhHHHHHHhcCCeEEEEec
Confidence 335567899999999999999999999999999 59999999999999999999999999999999999998
Q ss_pred CCeeeeccccchhhhhh-hhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCc
Q psy14416 236 NNGIYGGFDEATYAWLD-IIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQ 314 (1065)
Q Consensus 236 N~gy~~g~~~~~~~~~~-l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~ 314 (1065)
|+|-| |+|.+.|.-.. .......+.......+..+.++++ ||--|-.+. +..|.
T Consensus 484 N~Giy-g~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka---------~G~kG~~v~---------------t~~el 538 (571)
T KOG1185|consen 484 NNGIY-GLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKA---------FGGKGYFVS---------------TVEEL 538 (571)
T ss_pred CCccc-ccCcccHHHHhhcCcccCCCcccccccccHHHHHHH---------cCCCceeeC---------------CHHHH
Confidence 88866 99887776443 111222222223345677888887 666664332 22222
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 315 AACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 315 ~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
-+++- .--+.+.+|.++.+--+|..
T Consensus 539 ~~~l~--~a~q~~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 539 LAALQ--QACQDTDKPSVINVLIGPTA 563 (571)
T ss_pred HHHHH--HHHhcCCCCeEEEEEecccc
Confidence 22221 12234558888888777643
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=457.10 Aligned_cols=155 Identities=35% Similarity=0.498 Sum_probs=150.5
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|+++|++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+|||||||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~ 80 (574)
T PRK07979 1 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGAT 80 (574)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHh
Confidence 566899999999999999999999999999999999976 5799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+.+....+++.+|++|+..+++++|||+.++++++++++.+++|++.|.++++||
T Consensus 81 n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GP 156 (574)
T PRK07979 81 NAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGP 156 (574)
T ss_pred hhHHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=455.43 Aligned_cols=155 Identities=34% Similarity=0.503 Sum_probs=149.4
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|+++|++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 1 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 80 (572)
T PRK08979 1 MEMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGAT 80 (572)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHh
Confidence 456899999999999999999999999999999999975 4799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+++|+.+++|||+|+|++++...+++.+|++||..+++++|||+.++++++++++.+++|++.|++++|||
T Consensus 81 n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GP 156 (572)
T PRK08979 81 NTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGP 156 (572)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988777
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=453.24 Aligned_cols=300 Identities=30% Similarity=0.420 Sum_probs=250.4
Q ss_pred CCCcccc-cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEe
Q psy14416 1 MSEDYDE-ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVV 78 (1065)
Q Consensus 1 ~~~~~~~-~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t 78 (1065)
|++..|+ +++++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+|||++||++|
T Consensus 1 ~~~~~~~~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t 80 (566)
T PRK07282 1 MEKISLESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVT 80 (566)
T ss_pred CCCccccccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 4555554 4699999999999999999999999999999999965 5799999999999999999999999999999999
Q ss_pred CCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 79 SGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 79 ~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
+|||++|+++||++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++||
T Consensus 81 ~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~ 160 (566)
T PRK07282 81 SGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRP 160 (566)
T ss_pred CCccHHHHHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc------------------------------------------------------------------------------
Q psy14416 159 GR------------------------------------------------------------------------------ 160 (1065)
Q Consensus 159 GP------------------------------------------------------------------------------ 160 (1065)
||
T Consensus 161 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~p 240 (566)
T PRK07282 161 GPVVIDLPKDVSALETDFIYDPEVNLPSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIP 240 (566)
T ss_pred CeEEEeCChhhhhhhhcccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCC
Confidence 88
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 241 v~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~ 320 (566)
T PRK07282 241 VVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKT 320 (566)
T ss_pred EEeccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 321 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~ 400 (566)
T PRK07282 321 DIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVRSYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAA 400 (566)
T ss_pred CeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhchhccCcCCCcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHH
Confidence
Q ss_pred cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeee
Q psy14416 161 SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIY 240 (1065)
Q Consensus 161 ~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~ 240 (1065)
.+++...|.+++.++.||+|||++|+|+||+++ .|+|+||+++|||||||+.|||+|++||++|+++||+||++|
T Consensus 401 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA----~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y- 475 (566)
T PRK07282 401 QYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHSL- 475 (566)
T ss_pred HhcccCCCCcEecCCccccccchhhHhheehee----cCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCCc-
Confidence 113334566677777899999999999999999 799999999999999999999999999999999999999988
Q ss_pred eccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHH
Q psy14416 241 GGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAA 320 (1065)
Q Consensus 241 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A 320 (1065)
++.+ ++|+..+.................+++. ||+.|.++.. .+|..+++.+
T Consensus 476 -~~i~---~~q~~~~~~~~~~~~~~~~~d~~~lA~a---------~G~~~~~v~~---------------~~el~~al~~ 527 (566)
T PRK07282 476 -GMVR---QWQESFYEGRTSESVFDTLPDFQLMAQA---------YGIKHYKFDN---------------PETLAQDLEV 527 (566)
T ss_pred -hHHH---HHHHHHhCCCcccccCCCCCCHHHHHHH---------CCCEEEEECC---------------HHHHHHHHHH
Confidence 7655 5555443322211111122346677776 6665543322 2344444432
Q ss_pred HHHHHHhCCCeEEEEec
Q psy14416 321 QAIGYLTKKPGVCLVVS 337 (1065)
Q Consensus 321 ~g~ar~tgkpgv~~~ts 337 (1065)
..+++|.++-+..
T Consensus 528 ----~~~~~p~lIeV~v 540 (566)
T PRK07282 528 ----ITEDVPMLIEVDI 540 (566)
T ss_pred ----hcCCCCEEEEEEe
Confidence 1357888877653
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=452.38 Aligned_cols=155 Identities=33% Similarity=0.476 Sum_probs=150.1
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|+.|+++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~ 80 (574)
T PRK06466 1 MELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGAT 80 (574)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 566799999999999999999999999999999999965 5799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++|++.|+++||||
T Consensus 81 N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GP 156 (574)
T PRK06466 81 NAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGP 156 (574)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=454.63 Aligned_cols=153 Identities=25% Similarity=0.366 Sum_probs=148.8
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhc-CCcEEEEEeCCcchhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~t-g~~gv~~~t~GPG~~N 85 (1065)
+|+++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+| ||+|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 5789999999999999999999999999999999965 4799999999999999999999999 9999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++|++.|.++||||
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GP 156 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGP 156 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=447.61 Aligned_cols=156 Identities=26% Similarity=0.426 Sum_probs=151.0
Q ss_pred ccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 5 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 5 ~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
+..+|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++
T Consensus 4 ~~~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~ 83 (561)
T PRK06048 4 STEKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGAT 83 (561)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHH
Confidence 33458999999999999999999999999999999999878899999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+.+....+++.+|++||..+++++|||++++++++++++.+++|++.|++++|||
T Consensus 84 n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GP 159 (561)
T PRK06048 84 NLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGP 159 (561)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=449.23 Aligned_cols=268 Identities=29% Similarity=0.468 Sum_probs=236.0
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
||++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~ 80 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT 80 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 68999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc--------
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR-------- 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP-------- 160 (1065)
|+++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|.+++|||
T Consensus 81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 161 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~ 240 (548)
T PRK08978 161 IQLAEGELEPHLTTVENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEAD 240 (548)
T ss_pred hhhccccccccccccCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 241 hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 320 (548)
T PRK08978 241 HPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPA 320 (548)
T ss_pred CccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------------cccccCCCccccccccc
Q psy14416 161 ---------------------------------------------------------------SLLLNNLPRHRLDAGTF 177 (1065)
Q Consensus 161 ---------------------------------------------------------------~~l~~~~p~~~l~~~~~ 177 (1065)
.+++...|++++.++++
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (548)
T PRK08978 321 LQQPLNIDAWRQHCAQLRAEHAWRYDHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGL 400 (548)
T ss_pred HHHhccchHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCch
Confidence 11223456777777788
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhcc
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKS 257 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~ 257 (1065)
|+|||++|+|+|++++ .|+|+||+++|||||+|+.|||+|++|+++|+++||+||++| |+.+ ++|+..+..
T Consensus 401 g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~--~~~~---~~~~~~~~~ 471 (548)
T PRK08978 401 GTMGFGLPAAIGAQVA----RPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRL--GMVR---QWQQLFFDE 471 (548)
T ss_pred hhhhchHHHHHHHHHh----CCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcc--HHHH---HHHHHHhCC
Confidence 9999999999999999 799999999999999999999999999999999999999988 6655 455443332
Q ss_pred CCCcccccCccHHHHHHHHHHhcCceEEEeecCCchh
Q psy14416 258 NMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVI 294 (1065)
Q Consensus 258 g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~ 294 (1065)
+..............++++ ||++|.++.
T Consensus 472 ~~~~~~~~~~~d~~~la~a---------~G~~~~~v~ 499 (548)
T PRK08978 472 RYSETDLSDNPDFVMLASA---------FGIPGQTIT 499 (548)
T ss_pred cceecCCCCCCCHHHHHHH---------CCCeEEEEC
Confidence 2211111122456778887 777775543
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=442.93 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=149.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
.+||++|+|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 35799999999999999999999999999999999965 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.++...+.+.+|+.|+.++++++|||++++++++++++.+++|++.|.++||||
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GP 157 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGI 157 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=450.45 Aligned_cols=154 Identities=32% Similarity=0.497 Sum_probs=149.0
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
++||++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 45799999999999999999999999999999999965 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|+++||||
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GP 163 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGP 163 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988777
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=449.55 Aligned_cols=154 Identities=31% Similarity=0.506 Sum_probs=150.0
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..||++++|++.|+++||++|||+||+++.+|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 19 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N 98 (587)
T PRK06965 19 ADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTN 98 (587)
T ss_pred hhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 56899999999999999999999999999999999976 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||..+++++|||+.++++++++++.+++|++.|+++++||
T Consensus 99 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 173 (587)
T PRK06965 99 AVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGP 173 (587)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=442.93 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=148.5
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
||++|+|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 689999999999999999999999999999999976 4799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|+|+.++...+++.+|+.||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 153 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQV 153 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=443.85 Aligned_cols=267 Identities=30% Similarity=0.483 Sum_probs=235.1
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
.||++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+|||||||++|+|||++|++
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~ 93 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLV 93 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 58999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc-------
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR------- 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP------- 160 (1065)
+||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++|++.|+++||||
T Consensus 94 ~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 94 TGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred HHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 174 Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg 253 (570)
T PRK06725 174 DVQNEKVTSFYNEVVEIPGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLG 253 (570)
T ss_pred chhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCccCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 254 ~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~ 333 (570)
T PRK06725 254 AYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVK 333 (570)
T ss_pred CCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHH
Confidence
Q ss_pred -----------------------------------------------------------------------cccccCCCc
Q psy14416 161 -----------------------------------------------------------------------SLLLNNLPR 169 (1065)
Q Consensus 161 -----------------------------------------------------------------------~~l~~~~p~ 169 (1065)
.+++...|.
T Consensus 334 ~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~ 413 (570)
T PRK06725 334 KALHMLLHMSIHTQTDEWLQKVKTWKEEYPLSYKQKESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPR 413 (570)
T ss_pred HHHHHHHHhccccCcHHHHHHHHHHHHhChhhhcccCCCcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCC
Confidence 112234566
Q ss_pred cccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhh
Q psy14416 170 HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYA 249 (1065)
Q Consensus 170 ~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~ 249 (1065)
+++.++.+|+|||++|+|+|++++ .|+|+||+++|||||+|+.|||+|++||++|+++||+||++| ++.+ +
T Consensus 414 ~~~~~~~~gsmG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN~~~--~~~~---~ 484 (570)
T PRK06725 414 TFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFL--GMVR---Q 484 (570)
T ss_pred eEEccCCcccccchhhHHHhhHhh----cCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEECCcc--HHHH---H
Confidence 677777789999999999999999 799999999999999999999999999999999999999977 6654 5
Q ss_pred hhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch
Q psy14416 250 WLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV 293 (1065)
Q Consensus 250 ~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~ 293 (1065)
+|...+...... ..........++++ ||++|.++
T Consensus 485 ~q~~~~~~~~~~-~~~~~~d~~~~a~a---------~G~~~~~v 518 (570)
T PRK06725 485 WQEMFYENRLSE-SKIGSPDFVKVAEA---------YGVKGLRA 518 (570)
T ss_pred HHHHhcCCcccc-CcCCCCCHHHHHHH---------CCCeEEEe
Confidence 554443322111 11112456677877 77777554
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=442.11 Aligned_cols=269 Identities=33% Similarity=0.517 Sum_probs=235.7
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.+|+++|+|++.|+++||++|||+||+++.+|++++.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~ 82 (542)
T PRK05858 3 QTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNG 82 (542)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHH
Confidence 46899999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc------
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR------ 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP------ 160 (1065)
++||++|+.+++|||+|+|+.+....+++.+|++||..++++++||++++++++++++.+++|++.|+++|+||
T Consensus 83 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 83 MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 163 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg 242 (542)
T PRK05858 163 MDHAFSMADDDGRPGALTELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRG 242 (542)
T ss_pred hhhhhccccccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 243 ~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 322 (542)
T PRK05858 243 VVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGVFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGA 322 (542)
T ss_pred CCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccccCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHh
Confidence
Q ss_pred -------------------------------------------------------------------cccccCCCccccc
Q psy14416 161 -------------------------------------------------------------------SLLLNNLPRHRLD 173 (1065)
Q Consensus 161 -------------------------------------------------------------------~~l~~~~p~~~l~ 173 (1065)
.+++...|++++.
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~ 402 (542)
T PRK05858 323 GGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLD 402 (542)
T ss_pred cccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEe
Confidence 1122344566666
Q ss_pred cccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhh
Q psy14416 174 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDI 253 (1065)
Q Consensus 174 ~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l 253 (1065)
++.+|+|||++|+|+|++++ .|+|+||+++|||||||+.|||+|++||++|+++||+||++| |+.+ ..++.
T Consensus 403 ~~~~gsmG~~lp~aiGa~la----~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y--~~~~---~~~~~ 473 (542)
T PRK05858 403 PGPFGCLGTGPGYALAARLA----RPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIW--GLEK---HPMEA 473 (542)
T ss_pred CCCccccccchhHHHHHHHh----CCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEEEeCCch--hhHH---HHHHH
Confidence 66789999999999999999 699999999999999999999999999999999999999987 7654 44444
Q ss_pred hhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchh
Q psy14416 254 IKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVI 294 (1065)
Q Consensus 254 ~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~ 294 (1065)
.+...... ....-.....++++ ||+.|.++.
T Consensus 474 ~~~~~~~~-~~~~~~d~~~lA~a---------~G~~~~~v~ 504 (542)
T PRK05858 474 LYGYDVAA-DLRPGTRYDEVVRA---------LGGHGELVT 504 (542)
T ss_pred hcCCcccc-ccCCCCCHHHHHHH---------CCCeEEEeC
Confidence 33222111 11122466778887 777775553
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=448.86 Aligned_cols=155 Identities=24% Similarity=0.359 Sum_probs=150.6
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhc-CCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~t-g~~gv~~~t~GPG~ 83 (1065)
|.+||++++|++.|+++||++|||+||+++++|+++|.+. +|++|.||||++|+|||+||+|+| |||+||++|+|||+
T Consensus 1 ~~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~ 80 (591)
T PRK11269 1 MAKMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAG 80 (591)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcH
Confidence 4568999999999999999999999999999999999754 799999999999999999999999 99999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++++.+++|++.|+++||||
T Consensus 81 ~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GP 157 (591)
T PRK11269 81 TDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGP 157 (591)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=443.55 Aligned_cols=152 Identities=33% Similarity=0.511 Sum_probs=149.3
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
|+++++|++.|+++||++|||+||+++.+|+++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~ 80 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT 80 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence 68999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 152 (547)
T PRK08322 81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGA 152 (547)
T ss_pred HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=443.55 Aligned_cols=156 Identities=30% Similarity=0.460 Sum_probs=151.3
Q ss_pred ccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 5 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 5 ~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
.++++|++|+|++.|+++||++|||+||+++++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 12 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~ 91 (571)
T PRK07710 12 EEKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGAT 91 (571)
T ss_pred ccccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 35568999999999999999999999999999999999878899999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++.+++|++.|+++||||
T Consensus 92 N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 167 (571)
T PRK07710 92 NVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGP 167 (571)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=444.16 Aligned_cols=155 Identities=29% Similarity=0.472 Sum_probs=149.6
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
...|+++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||++||++|+|||++
T Consensus 10 ~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 89 (585)
T PLN02470 10 DEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGAT 89 (585)
T ss_pred CccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 4568999999999999999999999999999999999654 799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+.++...+++.+|++||..++++++||++++++++++++.+++|++.|.++||||
T Consensus 90 N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GP 165 (585)
T PLN02470 90 NLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGP 165 (585)
T ss_pred HHHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=443.42 Aligned_cols=154 Identities=34% Similarity=0.497 Sum_probs=150.3
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.+||++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~ 82 (552)
T PRK08617 3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNL 82 (552)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHh
Confidence 34799999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 83 l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 156 (552)
T PRK08617 83 ATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGA 156 (552)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=443.84 Aligned_cols=152 Identities=28% Similarity=0.450 Sum_probs=147.1
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
++++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+|||++||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 589999999999999999999999999999999963 3699999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++++.+++|++.|++++|||
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GP 157 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGP 157 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=444.93 Aligned_cols=157 Identities=27% Similarity=0.389 Sum_probs=150.7
Q ss_pred cccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeC
Q psy14416 4 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVS 79 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~ 79 (1065)
..+++|+++++|++.|+++||++|||+||+.+.+++++|.+ .+|++|.+|||++|+|||+||+|+|||||||++|+
T Consensus 14 ~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~ 93 (616)
T PRK07418 14 VTPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTS 93 (616)
T ss_pred cCCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 34577999999999999999999999999999999999964 26999999999999999999999999999999999
Q ss_pred CcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCc
Q psy14416 80 GPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159 (1065)
Q Consensus 80 GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpG 159 (1065)
|||++|+++||++|+.+++|||+|+|+.++...+++.||++||..++++++||++++++++++++.+++|++.|.++|||
T Consensus 94 GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~G 173 (616)
T PRK07418 94 GPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPG 173 (616)
T ss_pred CccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred c
Q psy14416 160 R 160 (1065)
Q Consensus 160 P 160 (1065)
|
T Consensus 174 P 174 (616)
T PRK07418 174 P 174 (616)
T ss_pred c
Confidence 7
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=440.47 Aligned_cols=157 Identities=30% Similarity=0.455 Sum_probs=151.1
Q ss_pred cccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 4 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
..|+++|++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||
T Consensus 8 ~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG 87 (564)
T PRK08155 8 STRKRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPG 87 (564)
T ss_pred ccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCc
Confidence 345567999999999999999999999999999999999754 7999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++||++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 165 (564)
T PRK08155 88 ATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGP 165 (564)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998898
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=439.77 Aligned_cols=150 Identities=37% Similarity=0.538 Sum_probs=146.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHH
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGM 90 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gl 90 (1065)
++++|++.|+++||++|||+||+++++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++||
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl 80 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL 80 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence 47999999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred hhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 91 ANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 91 a~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+.+++|||+|+|+.++...+++.||++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GP 150 (539)
T TIGR02418 81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGA 150 (539)
T ss_pred HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999988999999999999999999999999999999999999999999999999
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=438.63 Aligned_cols=153 Identities=30% Similarity=0.464 Sum_probs=148.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 4789999999999999999999999999999999975 479999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++|+.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++++.+++|++.|++++|||
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GP 155 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGP 155 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999998888
|
|
| >KOG4166|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=400.76 Aligned_cols=270 Identities=29% Similarity=0.457 Sum_probs=251.5
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
...|++|.+.+.+.+++|++|||.||+.++++++|+.++ .+++|..|||++|+|||.||+|.+||||||++|+|||++|
T Consensus 89 vg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATN 168 (675)
T KOG4166|consen 89 VGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATN 168 (675)
T ss_pred cCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCccc
Confidence 468999999999999999999999999999999999864 6999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc-----
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR----- 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP----- 160 (1065)
.+++|++|+.|++||+++|||.|++..|.++|||.|.+.+.+.||||.+.+.+.+++|+.+++||..|.++||||
T Consensus 169 vvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 169 VVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred ccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 249 PKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~qI 328 (675)
T KOG4166|consen 249 PKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERTQI 328 (675)
T ss_pred cHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhhcC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 329 PVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rggIiHfdis 408 (675)
T KOG4166|consen 329 PVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRGGIIHFDIS 408 (675)
T ss_pred cceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccccccchhhhChhhhhhhhcccCceEEEecC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 409 pknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vIk~Ldk~t~d~ 488 (675)
T KOG4166|consen 409 PKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVIKVLDKLTDDT 488 (675)
T ss_pred HHHhCcccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHHHHHHHhccCc
Confidence
Q ss_pred ------------------cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHh
Q psy14416 161 ------------------SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 222 (1065)
Q Consensus 161 ------------------~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~ 222 (1065)
.++.-..|.+|+.+++.|+||||+|+|+||++| +|+.-||=+.||+||.|+.|||+|+
T Consensus 489 ~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt~~ELat~ 564 (675)
T KOG4166|consen 489 GRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMTVQELATI 564 (675)
T ss_pred CceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhccccc----CcccEEEeccCCceeeeehHhhhhh
Confidence 334447899999999999999999999999999 8999999999999999999999999
Q ss_pred hhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhh
Q psy14416 223 VRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIE 295 (1065)
Q Consensus 223 vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~ 295 (1065)
++.++|+.|+++||. ..||.. +||.++|..+++-+-..+ +..-.++++ +|+++-++..
T Consensus 565 rq~~~PVKiLiLNNe--eqGMVt---QWq~lFYe~rysHThQ~n-Pnf~klA~A---------mGikalRV~K 622 (675)
T KOG4166|consen 565 RQENLPVKILILNNE--EQGMVT---QWQDLFYEARYSHTHQEN-PNFLKLAAA---------MGIKALRVTK 622 (675)
T ss_pred hhcCCceEEEEecch--hhhhHH---HHHHHHHHhhhccccccC-ccHHHHHHh---------cCCchheeeh
Confidence 999999999999999 669987 999999988775443333 566778887 8999987754
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=441.16 Aligned_cols=152 Identities=20% Similarity=0.359 Sum_probs=148.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
+||++++|++.|+++||++|||+||+++.+|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~ 80 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV 80 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 57999999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|.+++ ||
T Consensus 81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GP 152 (579)
T TIGR03457 81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GP 152 (579)
T ss_pred HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885 88
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=437.67 Aligned_cols=151 Identities=26% Similarity=0.407 Sum_probs=147.2
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
+|++++|++.|+++||++|||+||+++++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~ 81 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN 81 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence 69999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|+++ +||
T Consensus 82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GP 152 (549)
T PRK06457 82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGV 152 (549)
T ss_pred HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999885 488
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=437.69 Aligned_cols=154 Identities=29% Similarity=0.446 Sum_probs=148.2
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
|..+|++++|++.|+++||++|||+||+++.+|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||+
T Consensus 1 ~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~ 80 (576)
T PRK08611 1 MAKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGA 80 (576)
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcH
Confidence 556899999999999999999999999999999999964 479999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++||++|+.+++|||+|+|++++...+++.+|++||.++++++|||++++++++++++.+++|++.|++++ ||
T Consensus 81 ~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-GP 156 (576)
T PRK08611 81 IHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GV 156 (576)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864 88
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=437.71 Aligned_cols=153 Identities=27% Similarity=0.394 Sum_probs=146.9
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|+||++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||.+|
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n 80 (574)
T PRK09124 1 MKQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLH 80 (574)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHH
Confidence 458999999999999999999999999999999999764 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++|+++|+.+++|||+|+|+.+....+++.+|++||.+++++++||++++++++++++.+++|++.|++. +||
T Consensus 81 ~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-~gP 154 (574)
T PRK09124 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGV 154 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874 466
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=441.69 Aligned_cols=154 Identities=26% Similarity=0.427 Sum_probs=149.3
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
.+||++|+|++.|+++||++|||+||+++.+|+++|.+. +|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 29 ~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 108 (612)
T PRK07789 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATN 108 (612)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357999999999999999999999999999999999654 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||..+++++|||++++++++++++.+++|++.|+++|+||
T Consensus 109 ~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GP 183 (612)
T PRK07789 109 LVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGP 183 (612)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=438.46 Aligned_cols=150 Identities=25% Similarity=0.337 Sum_probs=144.6
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|+||++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+|||||||++|+|||++
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 1 MSQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 45899999999999999999999999999999999965 3699999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhccccc-ceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC-KYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~it-k~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
|+++||++|+.+++|||+|+|++++...+++.+|++||.++++++| ||+.++++++++++.+++|++.|+++
T Consensus 81 n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~ 153 (597)
T PRK08273 81 HLLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAE 153 (597)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999775
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=436.69 Aligned_cols=155 Identities=33% Similarity=0.519 Sum_probs=149.7
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|.+||++++|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 80 (574)
T PRK06882 1 MKKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGAT 80 (574)
T ss_pred CCcccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHH
Confidence 456899999999999999999999999999999999976 4799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|++++...+++.+|++||..+++++|||+.++++++++++.+++|++.|.+++|||
T Consensus 81 N~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GP 156 (574)
T PRK06882 81 NAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGP 156 (574)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888777
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=431.38 Aligned_cols=156 Identities=29% Similarity=0.399 Sum_probs=148.9
Q ss_pred ccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh---C-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 5 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ---E-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 5 ~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~---~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
.-+.|+++++|++.|+++||++|||+||+++++|+++|.+ . +|++|.+|||++|+|||+||+|+||||+||++|+|
T Consensus 6 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~G 85 (585)
T CHL00099 6 TLREKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSG 85 (585)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 3456899999999999999999999999999999999964 2 49999999999999999999999999999999999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
||++|+++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||+.++++++++++.+++|++.|.++||||
T Consensus 86 PG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GP 165 (585)
T CHL00099 86 PGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGP 165 (585)
T ss_pred CcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=430.83 Aligned_cols=153 Identities=42% Similarity=0.752 Sum_probs=146.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
.++++|+|++.|+++||++|||+||+++.++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 2 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 81 (554)
T TIGR03254 2 LTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGL 81 (554)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHH
Confidence 46899999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCc--CccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~--~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++|+.+++|||+|+|+.+... .+++.+|++||..+++++|||++++++++++++.+++|++.|+++||||
T Consensus 82 ~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGP 156 (554)
T TIGR03254 82 TALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGG 156 (554)
T ss_pred HHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999774 3667899999999999999999999999999999999999999999888
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=429.20 Aligned_cols=152 Identities=26% Similarity=0.422 Sum_probs=145.7
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
.|++|+|++.|+++||++|||+||+++++++++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~ 81 (535)
T PRK07524 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIAT 81 (535)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHH
Confidence 48999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccC--CCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIG--GFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~--~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
||++|+.+++|||+|+|+.+....+++ .+|+ .||.++++++|||++++.+++++++.+++|++.|.++||||
T Consensus 82 gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GP 156 (535)
T PRK07524 82 AMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRP 156 (535)
T ss_pred HHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999998877753 6676 59999999999999999999999999999999999999999
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=431.07 Aligned_cols=153 Identities=26% Similarity=0.373 Sum_probs=147.7
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|.||++++|++.|+++||+++||+||+++++|+++|.+. +|++|.||||++|+|||+||+|+||||+||++|+|||++|
T Consensus 1 ~~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N 80 (578)
T PRK06546 1 MAKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLH 80 (578)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHH
Confidence 348999999999999999999999999999999999875 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++|+++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|++ +|||
T Consensus 81 ~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GP 154 (578)
T PRK06546 81 LINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGV 154 (578)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 5688
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=430.86 Aligned_cols=152 Identities=26% Similarity=0.391 Sum_probs=148.2
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
|+++|+|++.|+++||++|||+||+++.+|+++|.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~ 80 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT 80 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 68999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GP 152 (586)
T PRK06276 81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGP 152 (586)
T ss_pred HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=429.27 Aligned_cols=155 Identities=30% Similarity=0.464 Sum_probs=150.3
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
.+.++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 5 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 84 (557)
T PRK08199 5 PRARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGAT 84 (557)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHH
Confidence 3457999999999999999999999999999999999765 599999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++||++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|+++||||
T Consensus 85 N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GP 160 (557)
T PRK08199 85 NASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGP 160 (557)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=428.68 Aligned_cols=152 Identities=32% Similarity=0.454 Sum_probs=148.2
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHH-hCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ-QEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~-~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
||++++|++.|+++||++|||+||+++++|+++|. +.+|++|.||||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 68999999999999999999999999999999997 46799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++++++++++.+++|++.|+++++||
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GP 153 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGP 153 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=423.34 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=142.8
Q ss_pred CCcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhc--CCcEEEEEeC
Q psy14416 2 SEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT--KKPGVCLVVS 79 (1065)
Q Consensus 2 ~~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~t--g~~gv~~~t~ 79 (1065)
.+..+++||++++|++.|+++||++|||+|| .+++++|.+.+|++|.||||++|+|||+||+|+| ||++||++|+
T Consensus 13 ~~~~~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~ 89 (565)
T PRK06154 13 LPAEAKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQY 89 (565)
T ss_pred CCCCcCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 4466788999999999999999999999994 4899999878899999999999999999999999 4999999999
Q ss_pred CcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCc
Q psy14416 80 GPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159 (1065)
Q Consensus 80 GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpG 159 (1065)
|||++|+++||++|+.+++|||+|+|+.+....+.+ +++|+.++++++|||+.++.+++++++.+++|++.|+++|||
T Consensus 90 GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~G 167 (565)
T PRK06154 90 GPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPG 167 (565)
T ss_pred CccHHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999988765443 357889999999999999999999999999999999999988
Q ss_pred c
Q psy14416 160 R 160 (1065)
Q Consensus 160 P 160 (1065)
|
T Consensus 168 P 168 (565)
T PRK06154 168 P 168 (565)
T ss_pred e
Confidence 8
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=428.60 Aligned_cols=149 Identities=26% Similarity=0.394 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||||||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 47899999999999999999999999999999653 5999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|+++|+.+++|||+|+|+.++...+++.+|++||.++++++|||+.++.+++++++.+++|++.|++ ++||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GP 151 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGV 151 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 5688
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=422.71 Aligned_cols=155 Identities=28% Similarity=0.377 Sum_probs=146.6
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
|.+||++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||+
T Consensus 1 ~~~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~ 80 (542)
T PRK08266 1 MTTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGV 80 (542)
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcH
Confidence 4568999999999999999999999999999999999764 79999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccC--CCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIG--GFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~--~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++|+++|+.+++|||+|+|+++....+++ .+|+ .||.++++++|||+.++++++++++.+++|++.|+++||||
T Consensus 81 ~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GP 160 (542)
T PRK08266 81 LNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRP 160 (542)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999998876664 4566 59999999999999999999999999999999999999999
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=425.76 Aligned_cols=153 Identities=21% Similarity=0.363 Sum_probs=148.5
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
++||++++|++.|+++||++|||+||+++.+|++++.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 4 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 83 (588)
T PRK07525 4 MKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNF 83 (588)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 45899999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+.+....+++.+|++||.+++++++||++++++++++++.+++|++.|+++ +||
T Consensus 84 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GP 156 (588)
T PRK07525 84 VTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGP 156 (588)
T ss_pred HHHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCC
Confidence 9999999999999999999999998899999999999999999999999999999999999999999987 588
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=424.92 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=145.2
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
++|++++|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 5799999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC--Ccc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+.++...+++. +|+ +||.++++++|||++++++++++++.+++|++.|++++|||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 158 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGP 158 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCc
Confidence 999999999999999999999988777763 555 69999999999999999999999999999999999998888
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=423.83 Aligned_cols=154 Identities=43% Similarity=0.776 Sum_probs=147.2
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
-.|+++++|++.|+++||++|||+||+.++++++++.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 8 QLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 35799999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCc--CccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~--~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+.++.. .+++.+|++||..+++++|||++++++++++++.+++|++.|+++||||
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGG 163 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCc
Confidence 9999999999999999999998764 3567899999999999999999999999999999999999999999988
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=423.18 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=143.7
Q ss_pred CCcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 2 SEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 2 ~~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
|+-+|+.++++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.||||++|+|||+||+|+|| +|||++|+|
T Consensus 9 ~~~~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~G 87 (578)
T PLN02573 9 TPVSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFT 87 (578)
T ss_pred CccccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecC
Confidence 4567888999999999999999999999999999999999965 47999999999999999999999999 999999999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcc--------cchhhhcccccceeccCCCcccHHHHHHHHHHH
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL 152 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~--------~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~ 152 (1065)
||++|+++|+++|+.+++|||+|+|+.++...+++.+|+ .++.++++++|||+.++.+++++++.+++|++.
T Consensus 88 pG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~ 167 (578)
T PLN02573 88 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAIST 167 (578)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988777766432 234589999999999999999999999999999
Q ss_pred hhcCCCcc
Q psy14416 153 STFGKPGR 160 (1065)
Q Consensus 153 A~~~rpGP 160 (1065)
|+++| ||
T Consensus 168 A~~~~-gP 174 (578)
T PLN02573 168 ALKES-KP 174 (578)
T ss_pred HHhcC-CC
Confidence 98864 66
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=414.24 Aligned_cols=153 Identities=25% Similarity=0.296 Sum_probs=144.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC------CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCc
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE------GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 81 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~------~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GP 81 (1065)
+++++|+|++.|+++||+++||+||+++++|++++.+. +|++|.||||++|+|||+||+|+||||+||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 46899999999999999999999999999999999643 399999999999999999999999999999999999
Q ss_pred chhhhhHHHhhcccCCCcEEEEecCCCCCcCcc--------CCCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHH
Q psy14416 82 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGI--------GGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL 152 (1065)
Q Consensus 82 G~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~--------~~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~ 152 (1065)
|++|+++||++|+.+++|||+|+|+.+....++ +.+|+ +||..++++++||++++++++++++.+++|++.
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~ 165 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQI 165 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776544 45899 699999999999999999999999999999999
Q ss_pred hhcCCCcc
Q psy14416 153 STFGKPGR 160 (1065)
Q Consensus 153 A~~~rpGP 160 (1065)
|.++||||
T Consensus 166 a~~~~~GP 173 (569)
T PRK08327 166 AMSEPKGP 173 (569)
T ss_pred HhcCCCCC
Confidence 99999888
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=412.90 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCC-CeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
+.+++|++.|+++||++|||+||+++++|++++.+.+ |++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 5789999999999999999999999999999998776 999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcc-----cc-hhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQE-----CP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~-----~d-q~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
||++|+.+++|||+|+|+.++...+++.+|+ +| |.++++++|||+.++.+++++++.+++|++.|++ +|||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gP 157 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRP 157 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCC
Confidence 9999999999999999999998888877443 64 7899999999999999999999999999999987 5688
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=405.96 Aligned_cols=153 Identities=19% Similarity=0.248 Sum_probs=147.0
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
..+|++++|++.|+++||+++||+||+++++|++++.+ +|++|.+|||++|+|||+||+|+|||++||++|+|||++|+
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 10 AMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 45799999999999999999999999999999999964 69999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+.+....+++.+|+ .||.+++++++||+.++++++++++.+++|++.|+++||||
T Consensus 89 ~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (530)
T PRK07092 89 MGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGP 163 (530)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999888888754 79999999999999999999999999999999999999999
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=409.55 Aligned_cols=156 Identities=25% Similarity=0.330 Sum_probs=146.8
Q ss_pred CcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 3 EDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 3 ~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
++.++.|+++++|++.|+++||++|||+++... +.+++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||
T Consensus 8 ~~~~~~~~~a~~i~~~L~~~GV~~vFG~~~~~~--~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG 85 (578)
T PRK06112 8 PGFTLNGTVAHAIARALKRHGVEQIFGQSLPSA--LFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPA 85 (578)
T ss_pred CCCccCcCHHHHHHHHHHHCCCCEEeecccchH--hHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCc
Confidence 456788999999999999999999999986543 456676678999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++||++|+.+++|||+|+|+.+....+++.+|++||.++++++|||+.++++++++++.+++|++.|+++||||
T Consensus 86 ~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (578)
T PRK06112 86 ATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGP 163 (578)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998888
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=402.22 Aligned_cols=147 Identities=19% Similarity=0.253 Sum_probs=132.3
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
.|++++|++.|+++||++|||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~ 79 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAI 79 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHh
Confidence 378999999999999999999999999999999965 58999999999999999999999999 7999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCc----------CccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDH----------EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~----------~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
+||++|+.+++|||+|+|++++.. .+.+.||++ .++++++|||+.++ +++++++.+++|++.|++++
T Consensus 80 ~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~ 156 (539)
T TIGR03393 80 NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRER 156 (539)
T ss_pred hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcC
Confidence 999999999999999999988742 234456654 57999999998866 78889999999999998754
Q ss_pred Ccc
Q psy14416 158 PGR 160 (1065)
Q Consensus 158 pGP 160 (1065)
||
T Consensus 157 -gP 158 (539)
T TIGR03393 157 -RP 158 (539)
T ss_pred -CC
Confidence 67
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=365.09 Aligned_cols=269 Identities=22% Similarity=0.338 Sum_probs=226.8
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
++.+|++++|+++|++.||+++||+||+.+++|+|.+.+ .++++|.|.||.+|+||||||||++| ++++++|.|.|..
T Consensus 1 ~~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGEL 79 (557)
T COG3961 1 SSPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGEL 79 (557)
T ss_pred CCceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchh
Confidence 467899999999999999999999999999999999976 46999999999999999999999999 9999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCC--Cc-----ccc-hhhhcccccceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ-----ECP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q-----~~d-q~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
.+++|++.+|.+++|||.|+|.+++....++. |+ +++ +.+|+++++.....+++.++++..++++++.+...
T Consensus 80 SA~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~ 159 (557)
T COG3961 80 SALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQ 159 (557)
T ss_pred hhhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999887655432 22 222 67999999999999999998999999999988753
Q ss_pred -CC------------------cc---------------------------------------------------------
Q psy14416 157 -KP------------------GR--------------------------------------------------------- 160 (1065)
Q Consensus 157 -rp------------------GP--------------------------------------------------------- 160 (1065)
|| +|
T Consensus 160 ~RPvYI~lP~dva~~~~~~p~~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p 239 (557)
T COG3961 160 RRPVYIGLPADVADLPIEAPLTPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFP 239 (557)
T ss_pred cCCeEEEcchHHhcCcCCCCCCccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCC
Confidence 22 22
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 240 ~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~~~~f 319 (557)
T COG3961 240 VATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIKDAVF 319 (557)
T ss_pred eEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEeccccc
Confidence
Q ss_pred -------------------------------------------------------------cc-----------cccCCC
Q psy14416 161 -------------------------------------------------------------SL-----------LLNNLP 168 (1065)
Q Consensus 161 -------------------------------------------------------------~~-----------l~~~~p 168 (1065)
++ .....|
T Consensus 320 ~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~~~~lP 399 (557)
T COG3961 320 TNLSMKDALQELAKKIDKRNLSAPPVAYPARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLP 399 (557)
T ss_pred CCeeHHHHHHHHHHHhhhcccCCCCccCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccceeeecC
Confidence 00 111223
Q ss_pred c--cccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee-----ee
Q psy14416 169 R--HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI-----YG 241 (1065)
Q Consensus 169 ~--~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy-----~~ 241 (1065)
. .++.+..||++||.+|+|+|+++| .|+||+|+++||||||||.||++|++|++++++++|+||+|| ..
T Consensus 400 ~~~~~i~Q~lWGSIG~t~pAalGa~~A----~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ifvlNN~GYTIEr~IH 475 (557)
T COG3961 400 KGATFISQPLWGSIGYTLPAALGAALA----APDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIERAIH 475 (557)
T ss_pred CCCeEEcccchhhcccccHhhhhhhhc----CCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEEEEcCCCcEEEehhc
Confidence 2 255566699999999999999999 599999999999999999999999999999999999999999 12
Q ss_pred cc-----ccchhhhhhhhhccCCCcccc-cCccHHHHHHHHHHh
Q psy14416 242 GF-----DEATYAWLDIIKKSNMSEDYD-EELSANQVIAQALKF 279 (1065)
Q Consensus 242 g~-----~~~~~~~~~l~~~~g~~~~~~-~~~~~~~~l~~~L~~ 279 (1065)
|+ +++.|||..+...++.+.... ...+.++.+..++..
T Consensus 476 g~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~ 519 (557)
T COG3961 476 GPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDV 519 (557)
T ss_pred CCCcCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHH
Confidence 22 678999999999999876554 345566666665443
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=390.09 Aligned_cols=132 Identities=20% Similarity=0.231 Sum_probs=124.5
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.++++++|++.|+++||++|||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 8 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~ 87 (568)
T PRK07449 8 NTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANL 87 (568)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhh
Confidence 3789999999999999999999999999999999965 479999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNI 139 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~ 139 (1065)
++||++|+.+++|||+|+|+++....+++.+|++||.+++++++++..+..+.
T Consensus 88 l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~ 140 (568)
T PRK07449 88 YPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEP 140 (568)
T ss_pred hHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999776665443
|
|
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=313.92 Aligned_cols=162 Identities=31% Similarity=0.485 Sum_probs=156.3
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
+++++|++.|+++||+++||+||+.+.+|++++.+ .+|++|.++||++|+|||+||+|++|||++|++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 47899999999999999999999999999999976 68999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|+++|+.+++|||+|+|+.+....+.+.+|++||.++++++|||+.++++++++++.+++|++.|++ ++|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~GPV~l~iP~d 159 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIA-KRGVAVLILPGD 159 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 569999999999
Q ss_pred hhhh
Q psy14416 427 LLAQ 430 (1065)
Q Consensus 427 v~~~ 430 (1065)
++.+
T Consensus 160 v~~~ 163 (164)
T cd07039 160 VQDA 163 (164)
T ss_pred Hhcc
Confidence 9764
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >KOG1184|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=335.12 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=135.9
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..++.+++|+++|.+.||+++||+||++++.|+|-|.. .++|++.|.||.+|+||||||||..| +++|++|.|.|...
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELS 80 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhh
Confidence 46789999999999999999999999999999999986 46999999999999999999999999 99999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCC--Cccc---c---hhhhcccccceeccCCCcccHHHHHHHHHHHhhc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQEC---P---QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 155 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q~~---d---q~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~ 155 (1065)
+++|++.||.+++|||+|+|.+++...+.+. |+.+ | +.+|++.++.++..+++.+++++.+++|++.+..
T Consensus 81 AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~ 158 (561)
T KOG1184|consen 81 ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALK 158 (561)
T ss_pred hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999988766543 2211 2 6799999999999999999999999999999875
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=323.70 Aligned_cols=274 Identities=26% Similarity=0.374 Sum_probs=245.9
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCC-CeEEEecChhhHHHHHHHHHHhc-CCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-i~~v~~rhE~~A~~mA~gyar~t-g~~gv~~~t~GPG~ 83 (1065)
|.+|..-|+-+-.|++.|++..||+||..+.|++.+|++.| |++|..||-.+|.+||.||.|.+ |.+|||+.||||.-
T Consensus 1 makmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpag 80 (592)
T COG3960 1 MAKMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAG 80 (592)
T ss_pred CcchhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCc
Confidence 56788899999999999999999999999999999998765 99999999999999999999985 99999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc---
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR--- 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP--- 160 (1065)
++++|||++|..|++|+|+||||.|+....+..||..|..++.+|++||+..+..|..+|..+++||..+.++||||
T Consensus 81 tdmitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvli 160 (592)
T COG3960 81 TDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLI 160 (592)
T ss_pred cchhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 161 dlp~dvq~aeiefd~d~yepl~~~kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpviptlmg 240 (592)
T COG3960 161 DLPFDVQVAEIEFDPDMYEPLPVYKPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLMG 240 (592)
T ss_pred ecccceEEEEEecCccccCcCCcCCchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcccchhcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 241 wg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqigrvf~pdlgivs 320 (592)
T COG3960 241 WGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIVS 320 (592)
T ss_pred ccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccccceeecCccceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 321 da~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgrd~~yvstiglsqia~ 400 (592)
T COG3960 321 DAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAA 400 (592)
T ss_pred chHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCCceeEEEeccHHHHhh
Confidence
Q ss_pred -cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 161 -SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 161 -~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.++....|++|+.|+..|++||.+|+|+|...+ .|+|.+|++.||-.|||.+.||+...++++|.++|++||.
T Consensus 401 aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfqfmieelavgaq~k~pyihv~vnna-- 474 (592)
T COG3960 401 AQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNA-- 474 (592)
T ss_pred hhhhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHHHHHHHHhhhhcccCceEEEEecch--
Confidence 345557899999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch
Q psy14416 240 YGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV 293 (1065)
Q Consensus 240 ~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~ 293 (1065)
|.|++| +-|+. ...+++...-.-..-+..+.-+||+|+-.+.|-..
T Consensus 475 ylglir---qaqr~-----f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgc 520 (592)
T COG3960 475 YLGLIR---QAQRA-----FDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC 520 (592)
T ss_pred HHHHHH---HHHhc-----CCccceeeehhhccCCccccccCccceeehhccCc
Confidence 899987 43332 22334333322233344588899999988777543
|
|
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=304.15 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=149.6
Q ss_pred HHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc
Q psy14416 272 VIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN 350 (1065)
Q Consensus 272 ~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e 350 (1065)
+|++.|+++||+++||+||+.+.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++|+++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 6899999999999999999999999999955 589999999999999999999999999999999999999999999999
Q ss_pred ccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh------HHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 351 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 351 A~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~------i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
|+.+++|||+|+|+.+...++++.+|++||..+|+++|||+.+++++++ +++.+++|++.|+++|||||||+||
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 9999999999999999999899999999999999999999999999999 9999999999999999999999999
Q ss_pred h
Q psy14416 425 A 425 (1065)
Q Consensus 425 ~ 425 (1065)
.
T Consensus 162 ~ 162 (162)
T cd07037 162 F 162 (162)
T ss_pred C
Confidence 4
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=386.10 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=139.7
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
+.-+++|++.|+++||+++||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 346899999999999999999999999999999965 4699999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccH------HHHHHHHHHHhhcC
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLI------GQHVEKAVRLSTFG 156 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i------~~~l~~A~~~A~~~ 156 (1065)
+|+++|+.+++|||+|||+++....+++.+|++||.+++++++||++++.+++++ ++.+++|++.|+++
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~ 455 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSS 455 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999983 58889888887664
|
|
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=300.43 Aligned_cols=169 Identities=35% Similarity=0.588 Sum_probs=158.9
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
|+++++|++.|+++||+++||+||+.+.+|+++++++ ++++|.++||++|+|||+||+|++|||+||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 5799999999999999999999999999999999887 799999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCC-ccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q-~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
+++++|+.+++|||+|+|+++....+++.+| ++||.++|++++||+.++.+++++++.+++|++.|.++++|||||+||
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 9999999999999999999999999999999 899999999999999999999999999999999998899999999999
Q ss_pred hhhhhhccccc
Q psy14416 425 ANLLAQRINQS 435 (1065)
Q Consensus 425 ~Dv~~~~~~~~ 435 (1065)
.|++.++++.+
T Consensus 161 ~dv~~~~~~~~ 171 (172)
T PF02776_consen 161 QDVQEAEVDEP 171 (172)
T ss_dssp HHHHTSEEECT
T ss_pred hhHhhCccCCC
Confidence 99999988653
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=293.59 Aligned_cols=159 Identities=32% Similarity=0.485 Sum_probs=151.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhH
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 88 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~ 88 (1065)
|++|+|++.|+++||+++||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|++|||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 57999999999999999999999999999999976 68999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccccCCC
Q psy14416 89 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168 (1065)
Q Consensus 89 gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~~~~p 168 (1065)
|+++|+.|++|||+|+|+.++...+++.+|++||.++++++|||+.++++++++++.+++|++.|.+ ++||+++ ..|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~GPV~l--~iP 157 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIA-KRGVAVL--ILP 157 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhc-CCCCEEE--EeC
Confidence 9999999999999999999999989999999999999999999999999999999999999999998 5699998 445
Q ss_pred ccc
Q psy14416 169 RHR 171 (1065)
Q Consensus 169 ~~~ 171 (1065)
.+.
T Consensus 158 ~dv 160 (164)
T cd07039 158 GDV 160 (164)
T ss_pred hHH
Confidence 443
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=292.20 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=146.5
Q ss_pred HHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh
Q psy14416 14 VIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN 92 (1065)
Q Consensus 14 ~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~ 92 (1065)
+|++.|+++||+++||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++|+++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 6899999999999999999999999999965 589999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCccc------HHHHHHHHHHHhhcCCCcccccc
Q psy14416 93 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 93 A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~------i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
|+.+++|||+|+|+.+....+++.+|++||.+++++++||+.+++++++ +++.+++|++.|.++||||+++.
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~ 159 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLN 159 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence 9999999999999999998899999999999999999999999999999 99999999999999999999974
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-32 Score=280.40 Aligned_cols=153 Identities=22% Similarity=0.326 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 349 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~ 349 (1065)
++|++.|+++||+++||+||+.+.+|.+++.+. +|++|.++||++|+|||+||+|+| +|+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 478999999999999999999999999999654 899999999999999999999999 899999999999999999999
Q ss_pred cccccCcceEeecCCCccCCCCCCCC-------Ccc-ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 350 NAQINCWPMLVIGGSCAQDHEGIGGF-------QEC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 350 eA~~~~vPLlvItg~~p~~~~g~ga~-------Q~i-dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+|+.+++|||+|+|+.+....+++.. |++ ||.++++++|||+.++++++++++.+++|++.|.+++ |||||
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999887766552 334 6899999999999999999999999999999999986 99999
Q ss_pred ecCh
Q psy14416 422 DFPA 425 (1065)
Q Consensus 422 ~iP~ 425 (1065)
+||.
T Consensus 159 ~iP~ 162 (162)
T cd07038 159 EIPR 162 (162)
T ss_pred EccC
Confidence 9994
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=315.92 Aligned_cols=218 Identities=19% Similarity=0.186 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHH
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 89 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~g 89 (1065)
.+++|++.|+++||++|||+||+.+.+|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 3789999999999999999999999999999964 579999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCccc------HHHHHHHHHHHhhcCCCccccc
Q psy14416 90 MANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 90 la~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~------i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
|++|+.+++|||+|+|++++...+++.+|++||.+++++++||+.+++++++ +++.+++|++.|+++||||+++
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999998 8999999999999999999886
Q ss_pred ccCCCccccc-c-------c--------cc-cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhh-hc
Q psy14416 164 LNNLPRHRLD-A-------G--------TF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLV-RY 225 (1065)
Q Consensus 164 ~~~~p~~~l~-~-------~--------~~-gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~v-r~ 225 (1065)
.. |.+... . . .. .......+..+... + .....-||+++++|.|...-...+|..++ ++
T Consensus 162 ~i--P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~-~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~ 237 (432)
T TIGR00173 162 NV--PFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDEL-W-DRLNQAKRGVIVAGPLPPAEDAEALAALAEAL 237 (432)
T ss_pred eC--CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHH-H-HHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhC
Confidence 43 222210 0 0 00 00001111222211 1 12235578888899998642345555444 68
Q ss_pred CCCEEEE
Q psy14416 226 RLPVILV 232 (1065)
Q Consensus 226 ~lpiviv 232 (1065)
++|++.-
T Consensus 238 ~~PV~tt 244 (432)
T TIGR00173 238 GWPLLAD 244 (432)
T ss_pred CCeEEEe
Confidence 8886653
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=278.46 Aligned_cols=156 Identities=37% Similarity=0.571 Sum_probs=147.2
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
||++|+|++.|+++||+++||+||+.+.+|+++|.+. ++++|.+|||++|++||+||+|++|||+||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 7999999999999999999999999999999999987 799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCc-ccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQ-ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q-~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
++|++|+.+++|||+|+|+.+....+++.+| +.||.+++++++||++++++++++++.+++|++.|..+++||+++.
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ 158 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLE 158 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEE
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999999873
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=270.39 Aligned_cols=150 Identities=21% Similarity=0.287 Sum_probs=139.7
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 91 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla 91 (1065)
|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|++||+||+|+| ||+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 579999999999999999999999999999654 799999999999999999999999 899999999999999999999
Q ss_pred hcccCCCcEEEEecCCCCCcCccCCC-------ccc-chhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 92 NAQINCWPMLVIGGSCAQDHEGIGGF-------QEC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 92 ~A~~~~~Pll~Isg~~~~~~~g~~~~-------Q~~-dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
+|+.+++|||+|+|+.+....+++.. |++ ||.+++++++||++++++++++++.+++|++.|.++| ||+++
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999887776542 334 5899999999999999999999999999999999987 99998
Q ss_pred c
Q psy14416 164 L 164 (1065)
Q Consensus 164 ~ 164 (1065)
.
T Consensus 159 ~ 159 (162)
T cd07038 159 E 159 (162)
T ss_pred E
Confidence 4
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=262.90 Aligned_cols=155 Identities=40% Similarity=0.615 Sum_probs=150.5
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN 350 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e 350 (1065)
++|++.|+++||+++||+||+.+.++.+++.++++++|.++||++|++||+||+|++|||++|++|+|||++|+++++.+
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 47899999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred ccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 351 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 351 A~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
|+.+++|||+|+++++....+++.+|+.||.++++++|||+.++++++++.+.+++|++.|.++|+|||||++|.
T Consensus 81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999989999999984
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-28 Score=248.58 Aligned_cols=152 Identities=39% Similarity=0.592 Sum_probs=147.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN 92 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~ 92 (1065)
|+|++.|+++||+++||+||+.+.++++++.+.++++|.++||.+|++||+||+|.+||+++|++|+|||++|++++|.+
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 93 AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 93 A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
|+.+++|||+|+|+++....++..+|+.||.+++++++||+.++++++++++.+++|++.|.++|+||+++.
T Consensus 81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ 152 (155)
T cd07035 81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALD 152 (155)
T ss_pred HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999989998874
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=261.93 Aligned_cols=232 Identities=25% Similarity=0.261 Sum_probs=202.7
Q ss_pred ccccHHHHHHHHHHhCCCc---------EEEEeCC-CChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEE
Q psy14416 7 EELSANQVIAQALKFQGIE---------YVFGIVG-IPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGV 74 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~---------~vFgvpG-~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv 74 (1065)
.++|.+++|+++|.++-+. -||++.| +++..+-+||.+. .+..+..+|||+.+++|.+|+|...|-.+
T Consensus 5 vRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~ 84 (617)
T COG3962 5 VRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRI 84 (617)
T ss_pred ehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhcee
Confidence 4689999999999986433 3888888 6778999999753 39999999999999999999999866554
Q ss_pred --EEEeCCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchh--------hhcccccceeccCCCcccHHH
Q psy14416 75 --CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV--------ELARPYCKYSARPPNIHLIGQ 144 (1065)
Q Consensus 75 --~~~t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~--------~l~~~itk~~~~v~~~~~i~~ 144 (1065)
|..+.|||++|++|+.+.|+.+++|+|+|.|++.........+|.+.|. +.|+|+++|..|+++||++-.
T Consensus 85 ~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~s 164 (617)
T COG3962 85 YAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMS 164 (617)
T ss_pred eEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHH
Confidence 4446699999999999999999999999999999888777777766543 689999999999999999999
Q ss_pred HHHHHHHHhhcC-CCcc---------------------------------------------------------------
Q psy14416 145 HVEKAVRLSTFG-KPGR--------------------------------------------------------------- 160 (1065)
Q Consensus 145 ~l~~A~~~A~~~-rpGP--------------------------------------------------------------- 160 (1065)
.+.+|++.++.. ..||
T Consensus 165 al~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~ 244 (617)
T COG3962 165 ALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSG 244 (617)
T ss_pred HHHHHHHHhCChhhcCceEEEechhhhhhhcCCcHHhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceeech
Confidence 999999998762 2355
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 245 A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~~~k~ 324 (617)
T COG3962 245 AREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKF 324 (617)
T ss_pred HHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEecccccccccccHHHhcCCCceE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14416 161 -------------------------------------------------------------------------------- 160 (1065)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (1065)
T Consensus 325 l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~ptq~~vigav 404 (617)
T COG3962 325 LNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVIGAV 404 (617)
T ss_pred EEeecccccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCccchhHHHHH
Confidence
Q ss_pred ----------------------cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHH
Q psy14416 161 ----------------------SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218 (1065)
Q Consensus 161 ----------------------~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~e 218 (1065)
.+|....|..+..+.+|+||||.+..++|+|++ .|+|.|++++|||||+|.-.|
T Consensus 405 ~~~~~~~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSymMlnSE 480 (617)
T COG3962 405 QRTISDDSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYMMLNSE 480 (617)
T ss_pred HhhcCCCcEEEEeCCCCcHHHHHHhccCCCCceeeeecccccccccccccccccC----CCCCeEEEEEcccchhhhhHH
Confidence 335567788888888999999999999999987 799999999999999999999
Q ss_pred HHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 219 LETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 219 L~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
|.|++.++.+|++++++|+|| |.+
T Consensus 481 L~Tsv~~g~Ki~Vvl~DN~Gy--GCI 504 (617)
T COG3962 481 LATSVMLGKKIIVVLLDNRGY--GCI 504 (617)
T ss_pred HHHHHHcCCeEEEEEECCCCc--chh
Confidence 999999999999999999999 654
|
|
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=233.82 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 11 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 11 ~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
++|+|++.|+++||+++||+||+.+.++++++.+ .++++|.+|||++|++||+||+|.+++ +|++++|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 4799999999999999999999999999999963 579999999999999999999997766 999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCc--cCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g--~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
++++|++|+.+++|||+|+|+.+....+ ...+|++|+..++++ +||+.++.+++++++.+++|++.|.++| +|+++
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999988776 556788999999999 9999999999999999999999999998 89876
Q ss_pred c
Q psy14416 164 L 164 (1065)
Q Consensus 164 ~ 164 (1065)
.
T Consensus 157 ~ 157 (160)
T cd07034 157 L 157 (160)
T ss_pred E
Confidence 4
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-26 Score=231.40 Aligned_cols=151 Identities=16% Similarity=0.072 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhcCceEEEeecCCchhhhHHHhh-----cCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 269 ANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ-----QEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 269 ~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~-----~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
++++|++.|+++||+++||+||+.+.++.+++. +.++++|.++||++|++||+||+|.+++ +|++|+|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 368999999999999999999999999999995 3579999999999999999999997666 999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCC--CCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g--~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+++++++|+.+++|||+|+|+++....+ ...+|++||..++++ +||+.++.+++++++.+++|++.|.+++ |||+|
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999998776 556788999999999 9999999999999999999999999888 89998
Q ss_pred ec
Q psy14416 422 DF 423 (1065)
Q Consensus 422 ~i 423 (1065)
-+
T Consensus 157 ~~ 158 (160)
T cd07034 157 LS 158 (160)
T ss_pred Ec
Confidence 64
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=247.02 Aligned_cols=209 Identities=22% Similarity=0.232 Sum_probs=160.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEE-eCCcc-hhhhhHHHhhcccCCC
Q psy14416 23 GIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLV-VSGPG-LLHTFGGMANAQINCW 98 (1065)
Q Consensus 23 GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~-t~GPG-~~N~l~gla~A~~~~~ 98 (1065)
||++++|||++...+|++.+.+ ..+++|.+.||..|+.+|.||+..|||.+++++ +||.| +.|.+++|++....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 7999999999999999999973 369999999999999999999999999888886 78999 8999999999999999
Q ss_pred cEEEEecCCCCCcCccCCCcccchh----hhccccc-ceeccCCCcccHHHHHHHHHHHhhcCC-C--------------
Q psy14416 99 PMLVIGGSCAQDHEGIGGFQECPQV----ELARPYC-KYSARPPNIHLIGQHVEKAVRLSTFGK-P-------------- 158 (1065)
Q Consensus 99 Pll~Isg~~~~~~~g~~~~Q~~dq~----~l~~~it-k~~~~v~~~~~i~~~l~~A~~~A~~~r-p-------------- 158 (1065)
|+|+|.|.+..... ....|...|- ++++.+- +|...-++.++....+++|++.+.... |
T Consensus 81 P~l~~i~~RG~~g~-~depqh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~~~~~ 159 (361)
T TIGR03297 81 PLLLIVGWRGEPGV-HDEPQHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTFASYK 159 (361)
T ss_pred CeeEEEecCCCCCC-CCCchhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccccccc
Confidence 99999976654321 1123332222 2333222 333333556677777888887764321 1
Q ss_pred -------------cc----------------cc----------ccc-CC-----CccccccccccCCCcchhHHHHHHhh
Q psy14416 159 -------------GR----------------SL----------LLN-NL-----PRHRLDAGTFGTMGVGLGFALAAALY 193 (1065)
Q Consensus 159 -------------GP----------------~~----------l~~-~~-----p~~~l~~~~~gsmG~gl~~AlGaala 193 (1065)
.+ ++ +.. +. |++++. +|+|||++|+|+|++++
T Consensus 160 ~~~~~~~~~~~~~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~~---~GsMG~a~p~AlG~ala 236 (361)
T TIGR03297 160 LKGEPANPLPTLMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLT---VGSMGHASQIALGLALA 236 (361)
T ss_pred cccCCCCCCcCCCCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceEe---echhhhHHHHHHHHHHH
Confidence 00 00 100 11 333433 59999999999999998
Q ss_pred hcccCCCCeEEEEeCCCCccccHHHHHHhhhcCC-CEEEEEEcCCee
Q psy14416 194 CNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL-PVILVIVNNNGI 239 (1065)
Q Consensus 194 ~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~l-pivivV~NN~gy 239 (1065)
.|+|+||+++|||+|+|+++||.|++++++ |+++||+||++|
T Consensus 237 ----~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~ 279 (361)
T TIGR03297 237 ----RPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAH 279 (361)
T ss_pred ----CCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccc
Confidence 799999999999999999999999999996 899999999987
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=220.84 Aligned_cols=153 Identities=22% Similarity=0.287 Sum_probs=145.1
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 349 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~ 349 (1065)
+++++.|+++||+++||+||+...++.+++.+ .+++++.++||++|++||+||+|.++ +++|++++|||++|+++++.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 36899999999999999999999999999965 57999999999999999999999999 99999999999999999999
Q ss_pred cccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 350 NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 350 eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+|+.+++|||+|+++++....+.+.+|+.||..++++++||...++++++..+.+.+|++.+..+ +|||+|++|.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 99999999999999999887778889999999999999999999999999999999999999877 8999999983
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=210.56 Aligned_cols=150 Identities=22% Similarity=0.276 Sum_probs=141.8
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 91 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla 91 (1065)
+++++.|+++|++++||+||+...++++++.+ .+++++.++||++|++||+||+|.++ +++|++++|||++|+++++.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 36899999999999999999999999999975 47999999999999999999999999 99999999999999999999
Q ss_pred hcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 92 NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 92 ~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
+|+.+++|||+|+++.+....+.+.+|+.||..++++++||..++.+++++++.+.+|++.+..+ +||+++.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ 151 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVR 151 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 99999999999999999877777889999999999999999999999999999999999999887 8998874
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-22 Score=201.66 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=120.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEE-EecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh
Q psy14416 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 91 (1065)
Q Consensus 13 e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v-~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla 91 (1065)
|++++.|+++||+++||+||+.+++|++++.. +|++| .+|||+++++||++| |.+|+++||+.++|+| |++++|+
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~-~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~ 77 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK-DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA 77 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh-CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence 68999999999999999999999999999953 49999 889999999998888 9999999998888876 9999999
Q ss_pred hcc-cCCCcEEEEecCCCC------CcCccCCCccc--chhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccc
Q psy14416 92 NAQ-INCWPMLVIGGSCAQ------DHEGIGGFQEC--PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSL 162 (1065)
Q Consensus 92 ~A~-~~~~Pll~Isg~~~~------~~~g~~~~Q~~--dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~ 162 (1065)
+|+ .+++|||+|+|++.. ...+.+.+++. ++.++ +++++++++++ ..+++|++.|.+++ ||++
T Consensus 78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i------~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~ 149 (157)
T TIGR03845 78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGI------PYTIPREPEEA-KLIEKAISDAYENS-RPVA 149 (157)
T ss_pred HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCC------CeEEeCCHHHH-HHHHHHHHHHHhCC-CCEE
Confidence 999 999999999988887 44444444443 33222 58889999999 99999999999998 9977
Q ss_pred cc
Q psy14416 163 LL 164 (1065)
Q Consensus 163 l~ 164 (1065)
+-
T Consensus 150 il 151 (157)
T TIGR03845 150 AL 151 (157)
T ss_pred EE
Confidence 63
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-22 Score=203.31 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=125.4
Q ss_pred HHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc
Q psy14416 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 349 (1065)
Q Consensus 271 ~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~ 349 (1065)
+++++.|+++||+++||+||+.+.++++++.. +|++| .++||.+|++||++| +.+|++++|+.++|+| |++++++
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~-~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~ 77 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK-DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA 77 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh-CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence 57999999999999999999999999999954 49999 889999999888888 9999999998898876 9999999
Q ss_pred ccc-ccCcceEeecCCCcc------CCCCCCCCCcc--ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEE
Q psy14416 350 NAQ-INCWPMLVIGGSCAQ------DHEGIGGFQEC--PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSY 420 (1065)
Q Consensus 350 eA~-~~~vPLlvItg~~p~------~~~g~ga~Q~i--dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~ 420 (1065)
+|+ .+++|||+|+|++.. .+.+.+.+++. ++.++ ++..+++++++ +.+++|++.|.+.+ |||+
T Consensus 78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i------~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~ 149 (157)
T TIGR03845 78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGI------PYTIPREPEEA-KLIEKAISDAYENS-RPVA 149 (157)
T ss_pred HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCC------CeEEeCCHHHH-HHHHHHHHHHHhCC-CCEE
Confidence 999 999999999999988 44445544433 33333 57888899999 99999999999888 9999
Q ss_pred EecChhh
Q psy14416 421 LDFPANL 427 (1065)
Q Consensus 421 L~iP~Dv 427 (1065)
|-++.++
T Consensus 150 il~~~~~ 156 (157)
T TIGR03845 150 ALLDPKY 156 (157)
T ss_pred EEEeCCc
Confidence 9998654
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-22 Score=211.27 Aligned_cols=135 Identities=14% Similarity=0.121 Sum_probs=105.2
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
||+++|+++ ||+++. |+++|+ +++|||+| +|+.+||
T Consensus 59 mG~~lpaai--Ga~la~--------p~~~vv---------------------------------~i~GDG~f-~m~~~eL 94 (202)
T cd02006 59 LGWTVPAAL--GVAAAD--------PDRQVV---------------------------------ALSGDYDF-QFMIEEL 94 (202)
T ss_pred hhhhhHHHH--hHHhhC--------CCCeEE---------------------------------EEEeChHh-hccHHHH
Confidence 399999998 999998 999999 99999999 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCC----cccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGE----VTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVP 1022 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 1022 (1065)
+|+ +|+++|+++||+||+| |+..... ......... ...........+++||.++|++||+++++|++.+
T Consensus 95 ~Ta-----~~~~lpviivV~NN~~-yg~~~~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~ 167 (202)
T cd02006 95 AVG-----AQHRIPYIHVLVNNAY-LGLIRQA-QRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPE 167 (202)
T ss_pred HHH-----HHhCCCeEEEEEeCch-HHHHHHH-HHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHH
Confidence 999 9999999999999987 4432221 111100000 0000111123456999999999999999999999
Q ss_pred HHHHHHHHHHh---cCCCCEEEEEEeCCCCCCC
Q psy14416 1023 QIKQAMKKCLQ---TTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1023 ~l~~~~~~~~~---~~~~~~li~~~~~~~~~~~ 1052 (1065)
||+++|+++++ ..++|+||||.+++++..+
T Consensus 168 el~~al~~a~~~~~~~~~p~liev~i~~~~~~~ 200 (202)
T cd02006 168 ELAAAFEQAKKLMAEHRVPVVVEAILERVTNIS 200 (202)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEEEecccccCC
Confidence 99999999985 2389999999999887643
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-21 Score=216.81 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=78.8
Q ss_pred CceEEEeecCCchhhhHHHhh-c-CCceEEEccCCchHHHHHHHHHHHhCCCeEEE-Eecccc-ccccccccccccccCc
Q psy14416 281 GIEYVFGIVGIPVIELAMACQ-Q-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCL-VVSGPG-LLHTFGGMANAQINCW 356 (1065)
Q Consensus 281 GV~~vfg~pG~~~~~l~~al~-~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~-~tsGpG-~~N~~~av~eA~~~~v 356 (1065)
||++++|+|.+...+++..+. + +.+++|.+.+|..|..+|.|+..+|||..+++ -.||.| ..|.+..+++...-++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 799999999999999999987 3 37999999999999999999999988755555 589999 9999999999999999
Q ss_pred ceEeecCCCccC
Q psy14416 357 PMLVIGGSCAQD 368 (1065)
Q Consensus 357 PLlvItg~~p~~ 368 (1065)
|+++|.+.|...
T Consensus 81 P~l~~i~~RG~~ 92 (361)
T TIGR03297 81 PLLLIVGWRGEP 92 (361)
T ss_pred CeeEEEecCCCC
Confidence 999999998654
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=207.34 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=106.7
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
+||+++++++ ||+++. |+++|+ +++|||+| +|+.++
T Consensus 54 ~mG~~lpaai--Ga~la~--------p~r~vv---------------------------------~i~GDG~f-~m~~~e 89 (196)
T cd02013 54 NCGYALPAII--GAKAAA--------PDRPVV---------------------------------AIAGDGAW-GMSMME 89 (196)
T ss_pred ccccHHHHHH--HHHHhC--------CCCcEE---------------------------------EEEcchHH-hccHHH
Confidence 3399999998 999998 999999 99999999 999999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIK 1025 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 1025 (1065)
|+|+ +++++|+++||+||+| |+..... .... ..+.. .....+++||.++|++||+++++|++.+||+
T Consensus 90 L~Ta-----~~~~lpvi~vV~NN~~-yg~~~~~-q~~~-~~~~~-----~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~ 156 (196)
T cd02013 90 IMTA-----VRHKLPVTAVVFRNRQ-WGAEKKN-QVDF-YNNRF-----VGTELESESFAKIAEACGAKGITVDKPEDVG 156 (196)
T ss_pred HHHH-----HHhCCCeEEEEEECch-hHHHHHH-HHHH-cCCCc-----ccccCCCCCHHHHHHHCCCEEEEECCHHHHH
Confidence 9999 9999999999999988 4432221 1111 11111 1122346999999999999999999999999
Q ss_pred HHHHHHHh---cCCCCEEEEEEeCCCCCCCcch
Q psy14416 1026 QAMKKCLQ---TTTRPSLINILINPSADRKPQN 1055 (1065)
Q Consensus 1026 ~~~~~~~~---~~~~~~li~~~~~~~~~~~~~~ 1055 (1065)
++|+++++ . ++|+||||.+++++..+.++
T Consensus 157 ~al~~a~~~~~~-~~p~liev~v~~~~~~~~~~ 188 (196)
T cd02013 157 PALQKAIAMMAE-GKTTVIEIVCDQELGDPFRR 188 (196)
T ss_pred HHHHHHHhcCCC-CCeEEEEEEeCcccCCchHH
Confidence 99999997 6 89999999999998765533
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-21 Score=207.02 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=114.4
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
+||+++|+++ ||+++. |+++|+ +++|||+| +|+.++
T Consensus 49 smG~~lpaAi--Ga~la~--------p~~~vv---------------------------------~i~GDGsf-~m~~~e 84 (205)
T cd02003 49 CMGYEIAAGL--GAKLAK--------PDREVY---------------------------------VLVGDGSY-LMLHSE 84 (205)
T ss_pred hhhhHHHHHH--HHHHhC--------CCCeEE---------------------------------EEEccchh-hccHHH
Confidence 3499999988 999998 999999 99999999 999999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcc-cCCC-------CCCCCCCccHHHHHHHcCCCeEe
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVT-TVSP-------PTSLGPSLRYEKMMAVFGHDGYL 1017 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~g~~~~~ 1017 (1065)
|+|+ +++++|+++||+||+| |+.+... .+........ .+.. .....+++||.++|++||+++++
T Consensus 85 L~Ta-----~~~~lpv~ivV~NN~~-~g~~~~~--q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~ 156 (205)
T cd02003 85 IVTA-----VQEGLKIIIVLFDNHG-FGCINNL--QESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEK 156 (205)
T ss_pred HHHH-----HHcCCCCEEEEEECCc-cHHHHHH--HHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEE
Confidence 9999 9999999999999988 3322211 1110000000 0000 12235679999999999999999
Q ss_pred eCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhHhh
Q psy14416 1018 CTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLTNL 1062 (1065)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 1062 (1065)
|++.+||+++|+++++. ++|+||||.++++...+.++.+|..+.
T Consensus 157 v~~~~el~~al~~a~~~-~gp~lIeV~v~~~~~~~~~~~~~~~~~ 200 (205)
T cd02003 157 VKTIEELKAALAKAKAS-DRTTVIVIKTDPKSMTPGYGSWWDVGV 200 (205)
T ss_pred ECCHHHHHHHHHHHHhC-CCCEEEEEEeeccccCCCCCCeEeCcc
Confidence 99999999999999976 899999999999999998888887543
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=214.43 Aligned_cols=152 Identities=19% Similarity=0.193 Sum_probs=139.1
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
..-+..+++.|.++||+++.-.||+.+.||--++.+. +|+++.-.+|++|+|+|.|.++.++||.+++||||..++|+.
T Consensus 8 t~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhcc
Confidence 4557889999999999999999999999999888765 799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHH-------HHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIG-------QHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~-------~~l~~A~~~A~~~rpGP 160 (1065)
+++.||...++|+|++|+++|...++.++.|.+||..||....+|+..+..|+.-+ ....++++.|.+..+||
T Consensus 88 PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~~Gp 167 (566)
T COG1165 88 PAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAGP 167 (566)
T ss_pred HHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999998887633 33466777776677777
|
|
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-21 Score=198.64 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=103.5
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++++ ||+++. |+++|+ +++|||+| +|+.++++
T Consensus 51 G~~lp~ai--Ga~la~--------~~~~vv---------------------------------~i~GDG~f-~m~~~eL~ 86 (177)
T cd02010 51 GVALPGAI--GAKLVY--------PDRKVV---------------------------------AVSGDGGF-MMNSQELE 86 (177)
T ss_pred hhHHHHHH--HHHHhC--------CCCcEE---------------------------------EEEcchHH-HhHHHHHH
Confidence 99999888 999998 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +|+++|+++||+||+| |+.+... ..... +. ......+++||.++|++||++++++++.+||+++
T Consensus 87 ta-----~~~~l~vi~vV~NN~~-~g~~~~~--~~~~~-~~-----~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~a 152 (177)
T cd02010 87 TA-----VRLKIPLVVLIWNDNG-YGLIKWK--QEKEY-GR-----DSGVDFGNPDFVKYAESFGAKGYRIESADDLLPV 152 (177)
T ss_pred HH-----HHHCCCeEEEEEECCc-chHHHHH--HHHhc-CC-----cccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHH
Confidence 99 9999999999999988 5543211 11111 11 1122235689999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1028 MKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
++++++. ++|+||||.+++++..
T Consensus 153 l~~a~~~-~~p~liev~~~~~~~~ 175 (177)
T cd02010 153 LERALAA-DGVHVIDCPVDYSENI 175 (177)
T ss_pred HHHHHhC-CCCEEEEEEecccccC
Confidence 9999986 8999999999986653
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=196.63 Aligned_cols=130 Identities=22% Similarity=0.374 Sum_probs=104.9
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
+|+++++++ ||+++. |+++|+ +++|||+| +|+.++|
T Consensus 52 mG~~lp~ai--Ga~la~--------~~~~vv---------------------------------~i~GDG~f-~~~~~eL 87 (186)
T cd02015 52 MGFGLPAAI--GAKVAR--------PDKTVI---------------------------------CIDGDGSF-QMNIQEL 87 (186)
T ss_pred hhchHHHHH--HHHHhC--------CCCeEE---------------------------------EEEcccHH-hccHHHH
Confidence 399998888 999998 899999 99999999 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQ 1026 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 1026 (1065)
+|+ +++++|+++||+||++ |+.+... ......+.. ......+++||.++|++||+++++|++.+||++
T Consensus 88 ~ta-----~~~~lpi~ivV~nN~~-~~~~~~~--~~~~~~~~~----~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~ 155 (186)
T cd02015 88 ATA-----AQYNLPVKIVILNNGS-LGMVRQW--QELFYEGRY----SHTTLDSNPDFVKLAEAYGIKGLRVEKPEELEA 155 (186)
T ss_pred HHH-----HHhCCCeEEEEEECCc-cHHHHHH--HHHHcCCce----eeccCCCCCCHHHHHHHCCCceEEeCCHHHHHH
Confidence 999 9999999999999987 3432221 111111111 112334679999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1027 AMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1027 ~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
+++++++. ++|+||||.++++++..+
T Consensus 156 al~~a~~~-~~p~liev~~~~~~~~~~ 181 (186)
T cd02015 156 ALKEALAS-DGPVLLDVLVDPEENVLP 181 (186)
T ss_pred HHHHHHhC-CCCEEEEEEeCCCcccCC
Confidence 99999976 899999999998776543
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=212.39 Aligned_cols=151 Identities=17% Similarity=0.065 Sum_probs=111.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
-+++.++++..+.+.|++.+.+.|+++.+++.+.+.+ .++.+....||.+|..||.|-+.+-. .++..|||||+
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~--ra~t~ts~~Gl 81 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGL--RAFCTMKHVGL 81 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCc--ceEEEccCCch
Confidence 4689999999999999999999999999999988744 35888888999999999988776433 45568999998
Q ss_pred ccccccccccc--ccCcceEeecCCCccCCCCCCCCCccChhh-hhcccccE-EeeCCChhhHHHHHHHHHHHhhcCCCC
Q psy14416 342 LHTFGGMANAQ--INCWPMLVIGGSCAQDHEGIGGFQECPQVE-LARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 342 ~N~~~av~eA~--~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~-l~~~~~k~-s~~l~~~~~i~~~i~~A~~~A~~~~~G 417 (1065)
.=+.-.+..+. --+.|+|++.+++|...- .|. +|.+ ++.-++.| .....+++++-+...+|++.|..- .-
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~----~~~-~q~d~~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~-~~ 155 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMHS----SQN-EQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKF-GL 155 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCcc----chh-hHhHHHHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHH-CC
Confidence 54444443333 337889999999876652 221 2322 33334454 445678888999999999999753 35
Q ss_pred EEEEecC
Q psy14416 418 VSYLDFP 424 (1065)
Q Consensus 418 PV~L~iP 424 (1065)
||.+..=
T Consensus 156 PV~v~~d 162 (595)
T TIGR03336 156 PVILRPT 162 (595)
T ss_pred CEEEEEe
Confidence 7877764
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=185.69 Aligned_cols=130 Identities=37% Similarity=0.642 Sum_probs=116.9
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HHHHhhhcCCCE
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AARTHALQNADL 561 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~~~~al~~aDl 561 (1065)
+++++++|++||||+|++|.++.++++.+++++|+|++|+||++++++||.++++||+|+| ....+++++||+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 5789999999999999999999888899999999999999999999999999999999987 356678899999
Q ss_pred EEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHH
Q psy14416 562 VLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618 (1065)
Q Consensus 562 VI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L 618 (1065)
||.+|+++++..+.++...+.++.++||||.|+..+++.+.+++.+++|++.+|++|
T Consensus 81 vl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 81 VLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred EEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 999999999987777655566666999999999999999999999999999999986
|
It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C .... |
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-20 Score=190.08 Aligned_cols=122 Identities=31% Similarity=0.518 Sum_probs=100.4
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ |++++. |+++|+ +++|||+| +|+.++++
T Consensus 51 G~~lp~Ai--Ga~la~--------~~~~vv---------------------------------~i~GDG~f-~~~~~el~ 86 (172)
T cd02004 51 GVGLGYAI--AAALAR--------PDKRVV---------------------------------LVEGDGAF-GFSGMELE 86 (172)
T ss_pred cchHHHHH--HHHHhC--------CCCeEE---------------------------------EEEcchhh-cCCHHHHH
Confidence 99999988 999998 899999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
++ +++++|+++||+||+| |+..... ... .. + .........+.+||.++|++||+++.+|++.+||+++
T Consensus 87 ta-----~~~~lpv~ivv~NN~~-~~~~~~~-~~~-~~-~---~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~a 154 (172)
T cd02004 87 TA-----VRYNLPIVVVVGNNGG-WYQGLDG-QQL-SY-G---LGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKPA 154 (172)
T ss_pred HH-----HHcCCCEEEEEEECcc-cccchhh-hhh-hc-c---CCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHHH
Confidence 99 9999999999999988 3332221 111 00 0 1122233446799999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeC
Q psy14416 1028 MKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~ 1046 (1065)
|+++++. ++|+||||.+|
T Consensus 155 l~~a~~~-~~p~liev~i~ 172 (172)
T cd02004 155 LKRALAS-GKPALINVIID 172 (172)
T ss_pred HHHHHHc-CCCEEEEEEcC
Confidence 9999986 89999999985
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-19 Score=189.17 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=94.4
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ +|+++. +++|+ +++|||+| +|+.++|+
T Consensus 54 G~~l~~ai--Ga~la~---------~~~Vv---------------------------------~i~GDGsf-~m~~~eL~ 88 (175)
T cd02009 54 DGTLSTAL--GIALAT---------DKPTV---------------------------------LLTGDLSF-LHDLNGLL 88 (175)
T ss_pred hhHHHHHH--HHHhcC---------CCCEE---------------------------------EEEehHHH-HHhHHHHH
Confidence 78888777 888874 36788 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +|+++|+++||+||++ |+.+... ..... +. .+...+...+++||+++|++||+++++|++.+||+++
T Consensus 89 ta-----~~~~l~v~ivVlNN~~-~g~~~~~--~~~~~-~~--~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~a 157 (175)
T cd02009 89 LG-----KQEPLNLTIVVINNNG-GGIFSLL--PQASF-ED--EFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQA 157 (175)
T ss_pred hc-----cccCCCeEEEEEECCC-Cchheec--cCCcc-cc--hhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHH
Confidence 99 9999999999999987 3321110 00000 00 0011111224799999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeC
Q psy14416 1028 MKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~ 1046 (1065)
|+++++. ++|+||||.+|
T Consensus 158 l~~a~~~-~~p~lIev~v~ 175 (175)
T cd02009 158 LESALAQ-DGPHVIEVKTD 175 (175)
T ss_pred HHHHHhC-CCCEEEEEeCC
Confidence 9999986 99999999985
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=188.48 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=100.9
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ +++++. |+++|+ +++|||+| +|+.++++
T Consensus 54 G~~~~~ai--Ga~~a~--------~~~~vv---------------------------------~i~GDG~f-~~~~~el~ 89 (178)
T cd02014 54 GNGLPGAI--AAKLAY--------PDRQVI---------------------------------ALSGDGGF-AMLMGDLI 89 (178)
T ss_pred hhHHHHHH--HHHHhC--------CCCcEE---------------------------------EEEcchHH-HhhHHHHH
Confidence 99889888 899988 889999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
++ +++++|+++||+||+| |+.+... ... . +. .......+.+||.++|++||++++++++.+||+++
T Consensus 90 t~-----~~~~lp~~~iv~NN~~-~~~~~~~-~~~-~--~~----~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~ 155 (178)
T cd02014 90 TA-----VKYNLPVIVVVFNNSD-LGFIKWE-QEV-M--GQ----PEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAA 155 (178)
T ss_pred HH-----HHhCCCcEEEEEECCc-hhHHHHH-HHH-h--cC----CceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHH
Confidence 99 9999999999999987 4432211 111 0 10 11122235689999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeCCCC
Q psy14416 1028 MKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
++++++. ++|+||||.+++++
T Consensus 156 l~~a~~~-~~p~liev~~~~~~ 176 (178)
T cd02014 156 LDEALAA-DGPVVIDVVTDPNE 176 (178)
T ss_pred HHHHHhC-CCCEEEEEEeCCCC
Confidence 9999986 89999999998764
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-19 Score=187.61 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=102.5
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
+||+++++++ ||+++. |+++|+ +++|||+| +|+.++
T Consensus 51 ~mG~~l~~ai--Gaala~--------~~~~vv---------------------------------~i~GDG~f-~~~~~e 86 (183)
T cd02005 51 SIGYSVPAAL--GAALAA--------PDRRVI---------------------------------LLVGDGSF-QMTVQE 86 (183)
T ss_pred hHhhhHHHHH--HHHHhC--------CCCeEE---------------------------------EEECCchh-hccHHH
Confidence 3499999888 999998 889999 99999999 999999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcC----CCeEeeCCH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG----HDGYLCTTV 1021 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~ 1021 (1065)
++|+ +++++|+++||+||+| |+.+... + . .. ..+...+++||.++|++|| +++.+|++.
T Consensus 87 l~ta-----~~~~~p~~ivV~nN~~-~~~~~~~-~----~-~~-----~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~ 149 (183)
T cd02005 87 LSTM-----IRYGLNPIIFLINNDG-YTIERAI-H----G-PE-----ASYNDIANWNYTKLPEVFGGGGGGLSFRVKTE 149 (183)
T ss_pred HHHH-----HHhCCCCEEEEEECCC-cEEEEEe-c----c-CC-----cCcccCCCCCHHHHHHHhCCCccccEEEecCH
Confidence 9999 9999999999999988 3322211 0 0 00 0112224589999999999 899999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1022 PQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1022 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
+||+++|+++++..++|+||||.+++++..
T Consensus 150 ~el~~al~~a~~~~~~p~liev~~~~~~~~ 179 (183)
T cd02005 150 GELDEALKDALFNRDKLSLIEVILPKDDAP 179 (183)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCcccCC
Confidence 999999999998238999999999987765
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=178.19 Aligned_cols=126 Identities=21% Similarity=0.343 Sum_probs=97.7
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++++ |++++. |+++|+ +++|||+| +|+.++++
T Consensus 52 G~~lp~ai--Gaala~--------~~~~vv---------------------------------~i~GDG~f-~~~~~el~ 87 (178)
T cd02002 52 GWGLPAAV--GAALAN--------PDRKVV---------------------------------AIIGDGSF-MYTIQALW 87 (178)
T ss_pred cchHHHHH--HHHhcC--------CCCeEE---------------------------------EEEcCchh-hccHHHHH
Confidence 88888888 999988 889999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCC-cccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGE-VTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQ 1026 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 1026 (1065)
++ +++++|+++||+||+| |+..... .......+. ...........+.+||.++|++||+++++|++.+||++
T Consensus 88 ta-----~~~~~p~~~iV~nN~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~ 160 (178)
T cd02002 88 TA-----ARYGLPVTVVILNNRG-YGALRSF-LKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDE 160 (178)
T ss_pred HH-----HHhCCCeEEEEEcCcc-HHHHHHH-HHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHH
Confidence 99 9999999999999987 3322111 111000000 00111122224569999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEEe
Q psy14416 1027 AMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1027 ~~~~~~~~~~~~~li~~~~ 1045 (1065)
+++++++. ++|+||||.+
T Consensus 161 al~~a~~~-~~p~vi~v~v 178 (178)
T cd02002 161 ALREALAE-GGPALIEVVV 178 (178)
T ss_pred HHHHHHhC-CCCEEEEEEC
Confidence 99999986 8999999975
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-18 Score=181.45 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=101.6
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 943 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~ 943 (1065)
+++||+++++++ ||+++. |+++|| +++|||+| +|+.
T Consensus 56 ~GsMG~glpaAi--GaalA~--------p~r~Vv---------------------------------~i~GDG~f-~m~~ 91 (202)
T PRK06163 56 LGSMGLAFPIAL--GVALAQ--------PKRRVI---------------------------------ALEGDGSL-LMQL 91 (202)
T ss_pred ecccccHHHHHH--HHHHhC--------CCCeEE---------------------------------EEEcchHH-HHHH
Confidence 455699999998 999998 999999 99999999 9999
Q ss_pred hhHHHhhccCcccc-CCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC-eEeeCCH
Q psy14416 944 TTYASIVESGEVTT-VLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD-GYLCTTV 1021 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~-~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 1021 (1065)
++++|+ +++ ++|+++||+||+| |+... +. .....+++||.++|++||++ +++|++.
T Consensus 92 ~eL~Ta-----~~~~~lpi~ivV~NN~~-yg~~~----------~~------~~~~~~~~Df~~lA~a~G~~~~~~v~~~ 149 (202)
T PRK06163 92 GALGTI-----AALAPKNLTIIVMDNGV-YQITG----------GQ------PTLTSQTVDVVAIARGAGLENSHWAADE 149 (202)
T ss_pred HHHHHH-----HHhcCCCeEEEEEcCCc-hhhcC----------Cc------cCCCCCCCCHHHHHHHCCCceEEEeCCH
Confidence 999999 876 6899999999987 33110 10 11223569999999999998 7899999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1022 PQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1022 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+||+++|+++++. ++|+||||.+++...
T Consensus 150 ~el~~al~~a~~~-~~p~lIeV~i~~~~~ 177 (202)
T PRK06163 150 AHFEALVDQALSG-PGPSFIAVRIDDKPG 177 (202)
T ss_pred HHHHHHHHHHHhC-CCCEEEEEEecCCCC
Confidence 9999999999986 999999999998765
|
|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=176.89 Aligned_cols=112 Identities=32% Similarity=0.399 Sum_probs=86.2
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|.+++.++.+|+|||++|+|+|++++ +|+|+|||++|||+|+|+.+||+|++||++|+++||+||++| |
T Consensus 38 ~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~p~r~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~y--g 111 (196)
T cd02013 38 LRFEKPRSFIAPLSFGNCGYALPAIIGAKAA----APDRPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQW--G 111 (196)
T ss_pred cCcCCCCeEEcCCCCcccccHHHHHHHHHHh----CCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEECchh--H
Confidence 4456788889888899999999999999998 799999999999999999999999999999999999999988 7
Q ss_pred cccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch
Q psy14416 243 FDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV 293 (1065)
Q Consensus 243 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~ 293 (1065)
+.+ +.|+..+...... ..........++++ ||+++.++
T Consensus 112 ~~~---~~q~~~~~~~~~~-~~~~~~d~~~lA~a---------~G~~~~~v 149 (196)
T cd02013 112 AEK---KNQVDFYNNRFVG-TELESESFAKIAEA---------CGAKGITV 149 (196)
T ss_pred HHH---HHHHHHcCCCccc-ccCCCCCHHHHHHH---------CCCEEEEE
Confidence 654 4444333221111 11112455667776 66666444
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-18 Score=178.42 Aligned_cols=82 Identities=33% Similarity=0.438 Sum_probs=73.3
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|++++.++.+|+|||++|+|+||+++ .|+|+|||++|||||+|+.|||+|++||++|+++||+||++| |
T Consensus 42 ~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la----~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpviivV~NN~~y--g 115 (202)
T cd02006 42 LHVYKPRHWINCGQAGPLGWTVPAALGVAAA----DPDRQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYL--G 115 (202)
T ss_pred cCcCCCCeEEccCCccchhhhhHHHHhHHhh----CCCCeEEEEEeChHhhccHHHHHHHHHhCCCeEEEEEeCchH--H
Confidence 4456788888888899999999999999999 799999999999999999999999999999999999999988 6
Q ss_pred cccchhhhhhh
Q psy14416 243 FDEATYAWLDI 253 (1065)
Q Consensus 243 ~~~~~~~~~~l 253 (1065)
+.+ ++|+.
T Consensus 116 ~~~---~~q~~ 123 (202)
T cd02006 116 LIR---QAQRA 123 (202)
T ss_pred HHH---HHHHH
Confidence 654 45543
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-17 Score=172.01 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=99.4
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEecccc-ccCcchh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI-YGGFDET 944 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~-~~~~~~~ 944 (1065)
+||+++++++ ||+++. |+++|| +++|||+ | +|..+
T Consensus 52 ~mG~glpaAi--Ga~la~--------p~r~Vv---------------------------------~i~GDGs~f-~m~~~ 87 (193)
T cd03375 52 LHGRALAVAT--GVKLAN--------PDLTVI---------------------------------VVSGDGDLA-AIGGN 87 (193)
T ss_pred hhccHHHHHH--HHHHhC--------CCCeEE---------------------------------EEeccchHh-hccHH
Confidence 3499888888 999998 999999 9999999 6 89999
Q ss_pred hHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE---eeCCH
Q psy14416 945 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY---LCTTV 1021 (1065)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 1021 (1065)
+++|+ +++++|+++||+||++ |+....... .....+......+.....+.+||.++|++||+++. ++++.
T Consensus 88 eL~ta-----~~~~lpv~iiVlnN~~-yg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~ 160 (193)
T cd03375 88 HFIHA-----ARRNIDITVIVHNNQI-YGLTKGQAS-PTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDI 160 (193)
T ss_pred HHHHH-----HHhCCCeEEEEEcCcc-cccCCCccC-CCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCH
Confidence 99999 9999999999999987 554332110 00001111111111112246899999999999994 79999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1022 PQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1022 ~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+||+++|+++++. ++|+||||.++
T Consensus 161 ~el~~al~~al~~-~gp~vIev~~~ 184 (193)
T cd03375 161 KQLKEIIKKAIQH-KGFSFVEVLSP 184 (193)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEECC
Confidence 9999999999986 99999999985
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-17 Score=169.82 Aligned_cols=77 Identities=40% Similarity=0.688 Sum_probs=70.2
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|.+++.++.+|+|||++|+|+|++++ .|+|+||+++|||+|+|+.+||+|++|+++|+++||+||++| +
T Consensus 35 ~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~~~--~ 108 (186)
T cd02015 35 YRFKKPRSWLTSGGLGTMGFGLPAAIGAKVA----RPDKTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNNGSL--G 108 (186)
T ss_pred cccCCCCeEEeCCCccchhchHHHHHHHHHh----CCCCeEEEEEcccHHhccHHHHHHHHHhCCCeEEEEEECCcc--H
Confidence 4446788888888899999999999999998 699999999999999999999999999999999999999977 5
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 109 ~~~ 111 (186)
T cd02015 109 MVR 111 (186)
T ss_pred HHH
Confidence 544
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-17 Score=168.43 Aligned_cols=122 Identities=14% Similarity=0.053 Sum_probs=96.9
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc-h
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-E 943 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-~ 943 (1065)
+++|+++++++ +++++. |+++|+ +++|||+| +|+ .
T Consensus 51 g~mG~gl~~Ai--Ga~la~--------p~~~Vv---------------------------------~i~GDG~f-~~~g~ 86 (178)
T cd02008 51 TCMGASIGVAI--GMAKAS--------EDKKVV---------------------------------AVIGDSTF-FHSGI 86 (178)
T ss_pred ccCccHHHHHh--hHHhhC--------CCCCEE---------------------------------EEecChHH-hhccH
Confidence 34499998888 999998 899999 99999999 888 5
Q ss_pred hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHH
Q psy14416 944 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQ 1023 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1023 (1065)
++++++ +++++|+++||+||++ |+...... . . ..........+.+||.++|++||++++++++.+|
T Consensus 87 ~eL~ta-----~~~~l~i~vvV~nN~~-~g~~~~~~--~----~--~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~ 152 (178)
T cd02008 87 LGLINA-----VYNKANITVVILDNRT-TAMTGGQP--H----P--GTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYD 152 (178)
T ss_pred HHHHHH-----HHcCCCEEEEEECCcc-eeccCCCC--C----C--CCcccccCCCCccCHHHHHHHCCCCEEEecCccC
Confidence 999999 9999999999999998 33222110 0 0 0001112334569999999999999999999998
Q ss_pred HH---HHHHHHHhcCCCCEEEEEEe
Q psy14416 1024 IK---QAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1024 l~---~~~~~~~~~~~~~~li~~~~ 1045 (1065)
|+ ++|+++++. ++|+||+|..
T Consensus 153 l~~~~~al~~a~~~-~gp~lI~v~~ 176 (178)
T cd02008 153 LKAIREELKEALAV-PGVSVIIAKR 176 (178)
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 88 888999876 8999999964
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-17 Score=165.51 Aligned_cols=123 Identities=22% Similarity=0.329 Sum_probs=98.5
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
+||+++++++ +++++. |+++|+ +++|||+| +|+.++
T Consensus 29 ~mG~~~~~ai--Ga~~a~--------p~~~vv---------------------------------~i~GDG~f-~~~~~e 64 (153)
T PF02775_consen 29 SMGYALPAAI--GAALAR--------PDRPVV---------------------------------AITGDGSF-LMSLQE 64 (153)
T ss_dssp -TTTHHHHHH--HHHHHS--------TTSEEE---------------------------------EEEEHHHH-HHHGGG
T ss_pred ccCCHHHhhh--HHHhhc--------CcceeE---------------------------------EecCCcce-eeccch
Confidence 3399888888 999987 999999 99999999 999999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCH--HH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTV--PQ 1023 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~ 1023 (1065)
|+|+ +++++|+++||+||++ |+..... .. ..+............+++||+++|++||+++++|++. +|
T Consensus 65 l~ta-----~~~~~~v~~vv~nN~~-~~~~~~~--~~--~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~e 134 (153)
T PF02775_consen 65 LATA-----VRYGLPVVIVVLNNGG-YGMTGGQ--QT--PFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEE 134 (153)
T ss_dssp HHHH-----HHTTSSEEEEEEESSB-SHHHHHH--HH--HTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHH
T ss_pred hHHH-----hhccceEEEEEEeCCc-ceEeccc--cc--cCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHH
Confidence 9999 9999999999999988 3322221 11 1111111111112578999999999999999999999 99
Q ss_pred HHHHHHHHHhcCCCCEEEEE
Q psy14416 1024 IKQAMKKCLQTTTRPSLINI 1043 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~ 1043 (1065)
|+++|+++++. ++|+||||
T Consensus 135 l~~al~~a~~~-~gp~vIeV 153 (153)
T PF02775_consen 135 LEEALREALES-GGPAVIEV 153 (153)
T ss_dssp HHHHHHHHHHS-SSEEEEEE
T ss_pred HHHHHHHHHhC-CCcEEEEc
Confidence 99999999976 99999997
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-17 Score=169.24 Aligned_cols=77 Identities=38% Similarity=0.581 Sum_probs=70.5
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|++++.++.+|+|||++|+|+|++++ +|+++||+++|||+|+|+.+||+|++||++|+++||+||++| |
T Consensus 33 ~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~m~~~eL~ta~~~~l~vi~vV~NN~~~--g 106 (177)
T cd02010 33 YRTYAPNTCLISNGLATMGVALPGAIGAKLV----YPDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGY--G 106 (177)
T ss_pred CCcCCCCCEEeCCCChhhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhHHHHHHHHHHHCCCeEEEEEECCcc--h
Confidence 4446678888899999999999999999998 799999999999999999999999999999999999999988 6
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 107 ~~~ 109 (177)
T cd02010 107 LIK 109 (177)
T ss_pred HHH
Confidence 643
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=163.09 Aligned_cols=116 Identities=21% Similarity=0.272 Sum_probs=98.2
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 943 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~ 943 (1065)
++++|+++++++ |++++. | ++|+ +++|||+| +|+.
T Consensus 41 ~gsmG~~lp~Ai--Ga~~a~--------~-~~Vv---------------------------------~i~GDG~f-~m~~ 75 (157)
T cd02001 41 LGSMGLAGSIGL--GLALGL--------S-RKVI---------------------------------VVDGDGSL-LMNP 75 (157)
T ss_pred ecchhhHHHHHH--HHHhcC--------C-CcEE---------------------------------EEECchHH-Hhcc
Confidence 566699999888 999987 6 7899 99999999 9999
Q ss_pred hhHHHhhccCcccc-CCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHH
Q psy14416 944 TTYASIVESGEVTT-VLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVP 1022 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~-~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 1022 (1065)
++++|+ .++ ++|+++||+||++ |+.... . .. . ...+||.++|++||++++++++.+
T Consensus 76 ~el~t~-----~~~~~~~i~~vV~nN~~-~g~~~~----------~-~~----~--~~~~d~~~lA~a~G~~~~~v~~~~ 132 (157)
T cd02001 76 GVLLTA-----GEFTPLNLILVVLDNRA-YGSTGG----------Q-PT----P--SSNVNLEAWAAACGYLVLSAPLLG 132 (157)
T ss_pred cHHHHH-----HHhcCCCEEEEEEeCcc-ccccCC----------c-CC----C--CCCCCHHHHHHHCCCceEEcCCHH
Confidence 999999 888 5999999999988 332210 0 00 1 126899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 1023 QIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
||+++++++++. ++|+||||.++++
T Consensus 133 el~~al~~a~~~-~gp~vi~v~i~~~ 157 (157)
T cd02001 133 GLGSEFAGLLAT-TGPTLLHAPIAPG 157 (157)
T ss_pred HHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 999999999986 8999999999863
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=163.93 Aligned_cols=77 Identities=66% Similarity=1.020 Sum_probs=70.7
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|.+++.++.+|+||+++|+|+|++++ .|+|+||+++|||+|+|+.+||+|++++++|+++||+||++| +
T Consensus 33 ~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la----~~~~~vv~i~GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~--~ 106 (172)
T cd02004 33 LRPRKPRHRLDAGTFGTLGVGLGYAIAAALA----RPDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGW--Y 106 (172)
T ss_pred ccccCCCcEecCCCCCcccchHHHHHHHHHh----CCCCeEEEEEcchhhcCCHHHHHHHHHcCCCEEEEEEECccc--c
Confidence 4456788888888899999999999999999 799999999999999999999999999999999999999988 6
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 107 ~~~ 109 (172)
T cd02004 107 QGL 109 (172)
T ss_pred cch
Confidence 554
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-16 Score=166.84 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=102.0
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchh
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 944 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 944 (1065)
+++|+++++++ |++++. |+++|+ +++|||+| +|+.+
T Consensus 48 g~mG~~lpaAi--Gaala~--------p~~~Vv---------------------------------~i~GDG~f-~m~~~ 83 (188)
T cd03371 48 GSMGHASQIAL--GIALAR--------PDRKVV---------------------------------CIDGDGAA-LMHMG 83 (188)
T ss_pred CccccHHHHHH--HHHHhC--------CCCcEE---------------------------------EEeCCcHH-Hhhcc
Confidence 77899999998 999998 899999 99999999 99999
Q ss_pred hHHHhhccCccccCC-CEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCe-EeeCCHH
Q psy14416 945 TYASIVESGEVTTVL-PVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDG-YLCTTVP 1022 (1065)
Q Consensus 945 ~~~~~~~~~~~~~~~-~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 1022 (1065)
+++|+ .++++ |+++||+||+| |+.+. +. ....+.+||.++|++||+++ ++|++.+
T Consensus 84 eL~ta-----~~~~l~~i~ivV~NN~~-yg~~~----------~~-------~~~~~~~d~~~~A~a~G~~~~~~v~~~~ 140 (188)
T cd03371 84 GLATI-----GGLAPANLIHIVLNNGA-HDSVG----------GQ-------PTVSFDVSLPAIAKACGYRAVYEVPSLE 140 (188)
T ss_pred HHHHH-----HHcCCCCcEEEEEeCch-hhccC----------Cc-------CCCCCCCCHHHHHHHcCCceEEecCCHH
Confidence 99999 99986 79999999987 43221 00 11234689999999999998 5899999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1023 QIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
||+++++++++. ++|+||||.+++....
T Consensus 141 el~~al~~a~~~-~~p~lIev~~~~~~~~ 168 (188)
T cd03371 141 ELVAALAKALAA-DGPAFIEVKVRPGSRS 168 (188)
T ss_pred HHHHHHHHHHhC-CCCEEEEEEecCCCCC
Confidence 999999999986 8999999999988764
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=168.84 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=71.0
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|.+++.++.+|+|||++|+|+|++++ +|+|+||+++|||+|+|+.+||+|++||++|+++||+||++| |
T Consensus 33 ~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~--g 106 (205)
T cd02003 33 WRARTPGGYHLEYGYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGF--G 106 (205)
T ss_pred CCcCCCCcEEcCCCcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhccHHHHHHHHHcCCCCEEEEEECCcc--H
Confidence 4446788888888899999999999999998 799999999999999999999999999999999999999988 7
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 107 ~~~ 109 (205)
T cd02003 107 CIN 109 (205)
T ss_pred HHH
Confidence 655
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.9e-15 Score=179.06 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=82.0
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
-|+|.|+++..+.+.|++.+.|.|+++..++.+.|.+ .++.+....+|.+|..||.|-+. +|.-+ +..|+|||+
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~-aG~ra-~t~ts~~Gl 81 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAW-SGLRA-FCTMKHVGL 81 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHh-cCcce-EEEccCCch
Confidence 5799999999999999999999999999999999864 25889999999999999999554 56444 456899998
Q ss_pred hhhhHHHhhcc--cCCCcEEEEecCCCCCc
Q psy14416 84 LHTFGGMANAQ--INCWPMLVIGGSCAQDH 111 (1065)
Q Consensus 84 ~N~l~gla~A~--~~~~Pll~Isg~~~~~~ 111 (1065)
.=+.-.|..+. --+.|++++.++.+...
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~ 111 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMH 111 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCc
Confidence 55555554433 33788999998876543
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-16 Score=169.95 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=96.3
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
+|++++.++ +|+++. |+++|| +++|||+|.+|..++|
T Consensus 64 mG~GlpaAi--Ga~~a~--------p~r~VV---------------------------------~i~GDG~~~~m~~~eL 100 (235)
T cd03376 64 VASGIEAAL--KALGRG--------KDITVV---------------------------------AFAGDGGTADIGFQAL 100 (235)
T ss_pred HHHHHHHHH--HHhccC--------CCCeEE---------------------------------EEEcCchHHhhHHHHH
Confidence 488888877 888887 999999 9999999328999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhh-cCCcccCCCCC-----CCCCCccHHHHHHHcCCCeE---e
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVE-SGEVTTVSPPT-----SLGPSLRYEKMMAVFGHDGY---L 1017 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~---~ 1017 (1065)
+++ +++++|+++||+||++ |+.. .. ...... .+......... ...+.+||.++|++||++++ +
T Consensus 101 ~ta-----~~~~~pv~~vVlNN~~-yg~t-g~-q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~ 172 (235)
T cd03376 101 SGA-----AERGHDILYICYDNEA-YMNT-GI-QRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATAS 172 (235)
T ss_pred HHH-----HHcCCCeEEEEECCcc-cccC-CC-CCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEc
Confidence 999 9999999999999976 5521 10 000000 01100000111 13355999999999999986 5
Q ss_pred eCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1018 CTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+++.+||+++|+++++. ++|+||||.++
T Consensus 173 v~~~~el~~al~~a~~~-~gP~lIev~~~ 200 (235)
T cd03376 173 VAYPEDLYKKVKKALSI-EGPAYIHILSP 200 (235)
T ss_pred CCCHHHHHHHHHHHHhC-CCCEEEEEECC
Confidence 99999999999999987 89999999985
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-16 Score=168.05 Aligned_cols=136 Identities=11% Similarity=0.041 Sum_probs=100.3
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
+|+++++++ +|+++...+. .|+++|+ +++|||+|.+|..+++
T Consensus 66 mG~GlpaAi--GA~~a~~~~~---~p~~~Vv---------------------------------~i~GDG~~~~~g~~~l 107 (237)
T cd02018 66 VASGLKRGL--KARFPKDREL---DKKKDVV---------------------------------VIGGDGATYDIGFGAL 107 (237)
T ss_pred HHHHHHHHH--Hhhccccccc---CCCCcEE---------------------------------EEeCchHHHhccHHHH
Confidence 488888888 8988811000 1889999 9999999933789999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHH-hhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe---eCCHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASI-VESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL---CTTVP 1022 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~ 1022 (1065)
++. +++++|+++||+||++ |+..... ... ...+..+...+.....+..||.++|++||+.+++ +++.+
T Consensus 108 ~ta-----~~~~l~i~ivVlNN~~-yg~~~~q--~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~ 179 (237)
T cd02018 108 SHS-----LFRGEDITVIVLDNEV-YSNTGGQ--RSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKK 179 (237)
T ss_pred HHH-----HHcCCCeEEEEECCcc-ccCCCCC--CCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHH
Confidence 999 8899999999999976 4422111 000 0011111112223345679999999999999996 99999
Q ss_pred HHHHHHHHHHh-cCCCCEEEEEEeCCCC
Q psy14416 1023 QIKQAMKKCLQ-TTTRPSLINILINPSA 1049 (1065)
Q Consensus 1023 ~l~~~~~~~~~-~~~~~~li~~~~~~~~ 1049 (1065)
||+++|+++++ . ++|+||||.++-..
T Consensus 180 ~l~~al~~al~~~-~GP~lI~v~i~c~~ 206 (237)
T cd02018 180 HFLKVVKEAISRT-DGPTFIHAYTPCIT 206 (237)
T ss_pred HHHHHHHHHHhcC-CCCEEEEEeCCCCC
Confidence 99999999997 6 89999999987543
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-16 Score=160.06 Aligned_cols=119 Identities=22% Similarity=0.402 Sum_probs=98.7
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchh
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 944 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 944 (1065)
+++|+++++++ |++++. | ++|+ +++|||+| +|+.+
T Consensus 42 g~mG~~lp~Ai--Gaala~--------~-~~vv---------------------------------~i~GDG~f-~m~~~ 76 (179)
T cd03372 42 GSMGLASSIGL--GLALAQ--------P-RKVI---------------------------------VIDGDGSL-LMNLG 76 (179)
T ss_pred cchhhHHHHHH--HHHhcC--------C-CcEE---------------------------------EEECCcHH-HhCHH
Confidence 44588888888 999987 7 8899 99999999 99999
Q ss_pred hHHHhhccCccccCC-CEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC-CHH
Q psy14416 945 TYASIVESGEVTTVL-PVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT-TVP 1022 (1065)
Q Consensus 945 ~~~~~~~~~~~~~~~-~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~ 1022 (1065)
+++++ +++++ |+++||+||+| |+.... . .....+.+||.++|++||+++++++ +.+
T Consensus 77 el~ta-----~~~~~~~l~vvV~NN~~-~~~~~~----------~------~~~~~~~~d~~~lA~a~G~~~~~v~~~~~ 134 (179)
T cd03372 77 ALATI-----AAEKPKNLIIVVLDNGA-YGSTGN----------Q------PTHAGKKTDLEAVAKACGLDNVATVASEE 134 (179)
T ss_pred HHHHH-----HHcCCCCEEEEEEcCcc-ccccCC----------C------CCCCCCCCCHHHHHHHcCCCeEEecCCHH
Confidence 99999 89984 79999999988 332210 0 0112247999999999999999999 999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1023 QIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
||+++|++++ ++|+||||.+++++...|
T Consensus 135 el~~al~~a~---~gp~lIev~~~~~~~~~~ 162 (179)
T cd03372 135 AFEKAVEQAL---DGPSFIHVKIKPGNTDVP 162 (179)
T ss_pred HHHHHHHHhc---CCCEEEEEEEcCCCCCCC
Confidence 9999999997 689999999998887544
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.5e-16 Score=158.14 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=98.0
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
++|++++.++ |++++. |+++|+ +++|||+| +++.++
T Consensus 47 ~~G~~~~~a~--Gaa~a~--------~~~~vv---------------------------------~~~GDG~~-~~~~~~ 82 (168)
T cd00568 47 AMGYGLPAAI--GAALAA--------PDRPVV---------------------------------CIAGDGGF-MMTGQE 82 (168)
T ss_pred hhhhhHHHHH--HHHHhC--------CCCcEE---------------------------------EEEcCcHH-hccHHH
Confidence 3388888777 888888 889999 99999999 889999
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIK 1025 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 1025 (1065)
++++ .++++|+++||+||++ |...... . .... .........+.+||.+++++||+++.++++.+||+
T Consensus 83 l~ta-----~~~~~~~~~iv~nN~~-~~~~~~~-~-~~~~-----~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~ 149 (168)
T cd00568 83 LATA-----VRYGLPVIVVVFNNGG-YGTIRMH-Q-EAFY-----GGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLE 149 (168)
T ss_pred HHHH-----HHcCCCcEEEEEECCc-cHHHHHH-H-HHHc-----CCCcccccCCCCCHHHHHHHCCCeEEEECCHHHHH
Confidence 9999 9999999999999987 3322221 1 1100 11122344577999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEEEe
Q psy14416 1026 QAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1026 ~~~~~~~~~~~~~~li~~~~ 1045 (1065)
++++++++. ++|+||||.+
T Consensus 150 ~a~~~a~~~-~~p~~i~v~~ 168 (168)
T cd00568 150 AALAEALAA-GGPALIEVKT 168 (168)
T ss_pred HHHHHHHhC-CCCEEEEEEC
Confidence 999999976 8999999975
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=159.04 Aligned_cols=121 Identities=18% Similarity=0.315 Sum_probs=99.0
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 943 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~ 943 (1065)
++++|+++++++ |++++. +++|+ +++|||+| +|+.
T Consensus 41 ~gsmG~~lpaAi--Ga~la~---------~~~Vv---------------------------------~i~GDG~f-~m~~ 75 (181)
T TIGR03846 41 LGSMGLASSIGL--GLALAT---------DRTVI---------------------------------VIDGDGSL-LMNL 75 (181)
T ss_pred ccccccHHHHHH--HHHHcC---------CCcEE---------------------------------EEEcchHH-Hhhh
Confidence 456699988888 999885 35688 99999999 9999
Q ss_pred hhHHHhhccCccccC-CCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe-eCCH
Q psy14416 944 TTYASIVESGEVTTV-LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL-CTTV 1021 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~~-~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~ 1021 (1065)
++++|+ ++++ +|+++||+||+| |+..... . ....+++||.++|++||+++.+ +++.
T Consensus 76 ~el~ta-----~~~~~~pv~~vV~NN~~-yg~~~~q---------~-------~~~~~~~d~~~lA~a~G~~~~~~v~~~ 133 (181)
T TIGR03846 76 GVLPTI-----AAESPKNLILVILDNGA-YGSTGNQ---------P-------TPASRRTDLELVAKAAGIRNVEKVADE 133 (181)
T ss_pred hHHHHH-----HHhCCCCeEEEEEeCCc-cccccCc---------C-------CCCCCCCCHHHHHHHCCCCeEEEeCCH
Confidence 999999 9999 599999999987 4432200 0 0111478999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1022 PQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1022 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
+||+++|+ +++. ++|+||||.+++++...|
T Consensus 134 ~~l~~al~-a~~~-~~p~li~v~~~~~~~~~p 163 (181)
T TIGR03846 134 EELRDALK-ALAM-KGPTFIHVKVKPGNAKVP 163 (181)
T ss_pred HHHHHHHH-HHcC-CCCEEEEEEeCCCCCCCC
Confidence 99999997 8765 899999999998876433
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-16 Score=161.26 Aligned_cols=76 Identities=25% Similarity=0.201 Sum_probs=68.4
Q ss_pred cccc-CCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeee
Q psy14416 162 LLLN-NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIY 240 (1065)
Q Consensus 162 ~l~~-~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~ 240 (1065)
+++. ..|++++.+.++++||+++|+|+|++++ . +|+||+++|||||+|++|||+|++|+++|+++||+||++|
T Consensus 34 ~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la----~-~~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~ivVlNN~~~- 107 (175)
T cd02009 34 FALPSDKTVRVFANRGASGIDGTLSTALGIALA----T-DKPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNNGG- 107 (175)
T ss_pred ccCccCCCceEEecCCccchhhHHHHHHHHHhc----C-CCCEEEEEehHHHHHhHHHHHhccccCCCeEEEEEECCCC-
Confidence 3444 5678888888899999999999999998 4 8999999999999999999999999999999999999987
Q ss_pred eccc
Q psy14416 241 GGFD 244 (1065)
Q Consensus 241 ~g~~ 244 (1065)
|+.
T Consensus 108 -g~~ 110 (175)
T cd02009 108 -GIF 110 (175)
T ss_pred -chh
Confidence 653
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-15 Score=167.50 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=105.7
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEecccc-ccCcchhhH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGI-YGGFDETTY 946 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~-~~~~~~~~~ 946 (1065)
|.++++|+ |++++. |+++|| +++|||+ | ++..+++
T Consensus 72 G~alpaAi--GaklA~--------Pd~~VV---------------------------------~i~GDG~~f-~mg~~eL 107 (286)
T PRK11867 72 GRALAIAT--GLKLAN--------PDLTVI---------------------------------VVTGDGDAL-AIGGNHF 107 (286)
T ss_pred hcHHHHHH--HHHHhC--------CCCcEE---------------------------------EEeCccHHH-hCCHHHH
Confidence 88888888 999998 999999 9999995 8 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe---eCCHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL---CTTVPQ 1023 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~ 1023 (1065)
+++ +|+++|+++||+||++ |+..... +......+..+...+.....+.+||.++|+++|+.++. +.+.+|
T Consensus 108 ~tA-----~r~nl~i~vIV~NN~~-yGmt~~q-~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~e 180 (286)
T PRK11867 108 IHA-----LRRNIDITYILFNNQI-YGLTKGQ-YSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQ 180 (286)
T ss_pred HHH-----HHhCCCcEEEEEeCHH-HhhhcCc-cCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHH
Confidence 999 9999999999999966 5533321 10000111111112222233569999999999999874 788999
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhH
Q psy14416 1024 IKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLT 1060 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 1060 (1065)
|+++|+++++. ++|+||||.++=-..-+...+.|.+
T Consensus 181 l~~al~~Al~~-~Gp~lIev~~~C~~~~~~~~~~~~~ 216 (286)
T PRK11867 181 LTELIKAAINH-KGFSFVEILQPCPTFNNVNTFDWFK 216 (286)
T ss_pred HHHHHHHHHhC-CCCEEEEEeCCCCCCCchHHHHHHH
Confidence 99999999987 8999999998644443444466664
|
|
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=154.83 Aligned_cols=77 Identities=45% Similarity=0.707 Sum_probs=70.1
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|.+++.+..+++||+++|+|+|++++ .|+|+||+++|||+|+|+.+||+|++|+++|+++||+||++| +
T Consensus 13 ~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~nN~~~--~ 86 (153)
T PF02775_consen 13 LRVRRPRRFLTSGGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVLNNGGY--G 86 (153)
T ss_dssp SCCSSTTEEEESTTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEEESSBS--H
T ss_pred cCcCCCCeEEcCCCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeeccchhHHHhhccceEEEEEEeCCcc--e
Confidence 4556788999999999999999999999998 799999999999999999999999999999999999999987 5
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 87 ~~~ 89 (153)
T PF02775_consen 87 MTG 89 (153)
T ss_dssp HHH
T ss_pred Eec
Confidence 543
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=166.41 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=101.9
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhh
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETT 945 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~ 945 (1065)
++|+++++|+ ||++|. |+++|| +++|||+|.++..++
T Consensus 69 ~~G~alPaAi--GaklA~--------Pdr~VV---------------------------------~i~GDG~f~~~g~~e 105 (277)
T PRK09628 69 THGRAVAYAT--GIKLAN--------PDKHVI---------------------------------VVSGDGDGLAIGGNH 105 (277)
T ss_pred ccccHHHHHH--HHHHHC--------CCCeEE---------------------------------EEECchHHHHhhHHH
Confidence 3488888887 999998 999999 999999993357789
Q ss_pred HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE---eeCCHH
Q psy14416 946 YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY---LCTTVP 1022 (1065)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 1022 (1065)
+.++ +|+++|+++||+||++ |+..... .......+..+...+.....+++||.++|++||+.++ ++++.+
T Consensus 106 l~ta-----~r~nlpi~iIV~NN~~-yGmt~~Q-~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~ 178 (277)
T PRK09628 106 TIHG-----CRRNIDLNFILINNFI-YGLTNSQ-TSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQ 178 (277)
T ss_pred HHHH-----HHhCcCeEEEEEEChH-Hhcceec-ccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHH
Confidence 9999 9999999999999965 5533211 1100011111111122223467899999999999984 999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1023 QIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
||+++++++++. ++|+||||.++...+
T Consensus 179 el~~al~~Al~~-~Gp~lIeV~~~c~~~ 205 (277)
T PRK09628 179 KLEKLLVKGFSH-KGFSFFDVFSNCHIN 205 (277)
T ss_pred HHHHHHHHHHhC-CCCEEEEEcCCCCCC
Confidence 999999999987 999999999987653
|
|
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-15 Score=157.93 Aligned_cols=77 Identities=32% Similarity=0.538 Sum_probs=69.9
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|++++.++.+|+||+++|+|+|++++ .|+|+||+++|||+|+|+.+||+|++||++|+++||+||++| +
T Consensus 35 ~~~~~~~~~~~~~~~g~mG~~l~~aiGaala----~~~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~~--~ 108 (183)
T cd02005 35 LKLPKGTRFISQPLWGSIGYSVPAALGAALA----APDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDGY--T 108 (183)
T ss_pred ccCCCCCEEEeccchhhHhhhHHHHHHHHHh----CCCCeEEEEECCchhhccHHHHHHHHHhCCCCEEEEEECCCc--E
Confidence 3345678888888999999999999999999 699999999999999999999999999999999999999987 5
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 109 ~~~ 111 (183)
T cd02005 109 IER 111 (183)
T ss_pred EEE
Confidence 544
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-15 Score=152.74 Aligned_cols=76 Identities=38% Similarity=0.535 Sum_probs=68.5
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
++...|.+++.+.. |+||+++|+|+|++++ .|+++||+++|||+|+|+.+||+|++++++|+++||+||++| +
T Consensus 35 ~~~~~~~~~~~~~~-g~mG~~lp~aiGaala----~~~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~~iV~nN~~~--~ 107 (178)
T cd02002 35 LPLTRPGSYFTLRG-GGLGWGLPAAVGAALA----NPDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNNRGY--G 107 (178)
T ss_pred cccCCCCCeeccCC-ccccchHHHHHHHHhc----CCCCeEEEEEcCchhhccHHHHHHHHHhCCCeEEEEEcCccH--H
Confidence 43456778888877 9999999999999998 689999999999999999999999999999999999999987 6
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 108 ~~~ 110 (178)
T cd02002 108 ALR 110 (178)
T ss_pred HHH
Confidence 654
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-15 Score=163.92 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=100.2
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|.++++|+ |+++|. |+++|| +++|||+|.++..++++
T Consensus 73 G~alpaAi--GaklA~--------pd~~VV---------------------------------~i~GDG~~~~mg~~eL~ 109 (301)
T PRK05778 73 GRAIAFAT--GAKLAN--------PDLEVI---------------------------------VVGGDGDLASIGGGHFI 109 (301)
T ss_pred ccHHHHHH--HHHHHC--------CCCcEE---------------------------------EEeCccHHHhccHHHHH
Confidence 88888888 999998 999999 99999997358899999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE---eeCCHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY---LCTTVPQI 1024 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~l 1024 (1065)
++ +|+++|+++||+||++ |+..... ...-...+..+...+.....+.+||.++|+++|+.++ ++.+.+||
T Consensus 110 tA-----~r~nl~i~vIV~NN~~-YG~t~gQ-~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL 182 (301)
T PRK05778 110 HA-----GRRNIDITVIVENNGI-YGLTKGQ-ASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL 182 (301)
T ss_pred HH-----HHHCCCcEEEEEeCch-hhcccCc-ccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH
Confidence 99 9999999999999966 5543321 1000011111111222233457999999999999997 79999999
Q ss_pred HHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1025 KQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1025 ~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+++|+++++. ++|+||||.++
T Consensus 183 ~~ai~~A~~~-~GpalIeV~~~ 203 (301)
T PRK05778 183 VELIKKAISH-KGFAFIDVLSP 203 (301)
T ss_pred HHHHHHHHhC-CCCEEEEEcCC
Confidence 9999999987 99999999986
|
|
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-15 Score=158.01 Aligned_cols=59 Identities=25% Similarity=0.468 Sum_probs=56.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhc-CCCEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY-RLPVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~-~lpivivV~NN~gy 239 (1065)
+|+|||++|+|+|++++ +|+|+||+++|||||+|++|||+|++++ ++|+++||+||++|
T Consensus 56 ~GsMG~glpaAiGaalA----~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~y 115 (202)
T PRK06163 56 LGSMGLAFPIALGVALA----QPKRRVIALEGDGSLLMQLGALGTIAALAPKNLTIIVMDNGVY 115 (202)
T ss_pred ecccccHHHHHHHHHHh----CCCCeEEEEEcchHHHHHHHHHHHHHHhcCCCeEEEEEcCCch
Confidence 89999999999999999 7999999999999999999999999987 68999999999988
|
|
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-15 Score=153.41 Aligned_cols=77 Identities=39% Similarity=0.570 Sum_probs=70.4
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|++++.++.+|+||+++|+|+|++++ +|+|+||+++|||||+|+.+||+|++++++|+++||+||++| +
T Consensus 36 ~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a----~~~~~vv~i~GDG~f~~~~~el~t~~~~~lp~~~iv~NN~~~--~ 109 (178)
T cd02014 36 LRMNGKQRFILSGLLATMGNGLPGAIAAKLA----YPDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNSDL--G 109 (178)
T ss_pred cccCCCCcEEcCCCCchhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEECCch--h
Confidence 4446788888888899999999999999998 799999999999999999999999999999999999999987 6
Q ss_pred ccc
Q psy14416 243 FDE 245 (1065)
Q Consensus 243 ~~~ 245 (1065)
+.+
T Consensus 110 ~~~ 112 (178)
T cd02014 110 FIK 112 (178)
T ss_pred HHH
Confidence 644
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-14 Score=148.02 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=60.5
Q ss_pred CCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhc-CCCEEEEEEcCCeeeeccc
Q psy14416 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY-RLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 167 ~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~-~lpivivV~NN~gy~~g~~ 244 (1065)
.|++++. +|+||+++|+|+|++++ .| |+||+++|||||+|+.+||+|++|+ ++|+++||+||++| |+.
T Consensus 34 ~~~~~~~---~gsmG~~lp~AiGa~~a----~~-~~Vv~i~GDG~f~m~~~el~t~~~~~~~~i~~vV~nN~~~--g~~ 102 (157)
T cd02001 34 RDGHFYM---LGSMGLAGSIGLGLALG----LS-RKVIVVDGDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAY--GST 102 (157)
T ss_pred CCCCEEe---ecchhhHHHHHHHHHhc----CC-CcEEEEECchHHHhcccHHHHHHHhcCCCEEEEEEeCccc--ccc
Confidence 4555554 89999999999999998 45 9999999999999999999999999 59999999999988 553
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-14 Score=155.70 Aligned_cols=127 Identities=12% Similarity=0.109 Sum_probs=98.3
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc-hhhH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-ETTY 946 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-~~~~ 946 (1065)
|.++++|+ |++++. |+++|| +++|||+| ++. .++|
T Consensus 63 G~alp~Ai--GaklA~--------pd~~VV---------------------------------ai~GDG~~-~~iG~~eL 98 (280)
T PRK11869 63 GRAIPAAT--AVKATN--------PELTVI---------------------------------AEGGDGDM-YAEGGNHL 98 (280)
T ss_pred ccHHHHHH--HHHHHC--------CCCcEE---------------------------------EEECchHH-hhCcHHHH
Confidence 88888887 999998 999999 99999999 544 8999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe---eCCHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL---CTTVPQ 1023 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~ 1023 (1065)
+++ +|+++|+++||+||++ |+..... ...-...|..+...+.....+..||.++|+++|+.++. +.+++|
T Consensus 99 ~tA-----~r~nl~i~~IV~NN~~-Yg~t~~Q-~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~ 171 (280)
T PRK11869 99 IHA-----IRRNPDITVLVHNNQV-YGLTKGQ-ASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEE 171 (280)
T ss_pred HHH-----HHhCcCcEEEEEECHH-Hhhhcce-ecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHH
Confidence 999 9999999999999975 5533221 10000011111112223334568999999999999999 789999
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1024 IKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
|+++++++++. ++|+||||.++
T Consensus 172 l~~~i~~Al~~-~Gp~lIeV~~p 193 (280)
T PRK11869 172 TKEILKEAIKH-KGLAIVDIFQP 193 (280)
T ss_pred HHHHHHHHHhC-CCCEEEEEECC
Confidence 99999999987 99999999986
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-14 Score=155.37 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=103.3
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccc-cccCcchhhH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG-IYGGFDETTY 946 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~-~~~~~~~~~~ 946 (1065)
|.++++|+ |++++. |+++|| +++||| +| ++..+++
T Consensus 62 G~alp~A~--GaklA~--------Pd~~VV---------------------------------~i~GDG~~f-~ig~~eL 97 (279)
T PRK11866 62 GRVLPIAT--GVKWAN--------PKLTVI---------------------------------GYGGDGDGY-GIGLGHL 97 (279)
T ss_pred ccHHHHHH--HHHHHC--------CCCcEE---------------------------------EEECChHHH-HccHHHH
Confidence 88888877 999998 999999 999999 79 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEee---CCHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLC---TTVPQ 1023 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~ 1023 (1065)
.++ +|.++|+++||+||+. |+..... .......|..+...+.....+.+|+.++|+++|+.++.. .+.+|
T Consensus 98 ~tA-----~rrn~~i~vIV~nN~~-ygmtggQ-~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~ 170 (279)
T PRK11866 98 PHA-----ARRNVDITYIVSNNQV-YGLTTGQ-ASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH 170 (279)
T ss_pred HHH-----HHHCcCcEEEEEEChh-hhhhccc-ccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH
Confidence 999 9999999999999954 6644321 111011111111122222223479999999999987766 88899
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhh
Q psy14416 1024 IKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWL 1059 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 1059 (1065)
|+++|+++++. ++|++|||..+=-..-+...+.|.
T Consensus 171 l~~~l~~Al~~-~Gps~I~v~~pC~~~n~~~~~~~~ 205 (279)
T PRK11866 171 LKEIIKEAIKH-KGFSFIDVLSPCVTFNKLNTYDWF 205 (279)
T ss_pred HHHHHHHHHhC-CCCEEEEEeCCCCCCCCcchhhhh
Confidence 99999999987 999999999863333233245563
|
|
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-14 Score=149.63 Aligned_cols=68 Identities=26% Similarity=0.379 Sum_probs=60.6
Q ss_pred CCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcC-CCEEEEEEcCCeeeeccc
Q psy14416 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYR-LPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 167 ~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~-lpivivV~NN~gy~~g~~ 244 (1065)
.|..++. +|+||+++|+|+|++++ + +++||+++|||+|+|+.|||+|+++++ +|+++||+||++| |+.
T Consensus 34 ~~~~~~~---~gsmG~~lpaAiGa~la----~-~~~Vv~i~GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~y--g~~ 102 (181)
T TIGR03846 34 RPLNFYM---LGSMGLASSIGLGLALA----T-DRTVIVIDGDGSLLMNLGVLPTIAAESPKNLILVILDNGAY--GST 102 (181)
T ss_pred CCCCeee---ccccccHHHHHHHHHHc----C-CCcEEEEEcchHHHhhhhHHHHHHHhCCCCeEEEEEeCCcc--ccc
Confidence 3444443 89999999999999998 6 999999999999999999999999999 5999999999988 654
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-14 Score=147.77 Aligned_cols=64 Identities=31% Similarity=0.396 Sum_probs=59.9
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
.+|+||+++|+|+|++++ +|+++||+++|||+|+|+ .+||.|++|+++|+++||+||++| |+.+
T Consensus 49 ~~g~mG~gl~~AiGa~la----~p~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~--g~~~ 113 (178)
T cd02008 49 TCTCMGASIGVAIGMAKA----SEDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRTT--AMTG 113 (178)
T ss_pred ccccCccHHHHHhhHHhh----CCCCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcce--eccC
Confidence 489999999999999999 799999999999999999 799999999999999999999987 6654
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-14 Score=148.98 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=59.2
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCC-ccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGs-f~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
+++||+++|+|+|++++ +|+|+||+++|||| |+|+.|||+|++|+++|+++||+||++| |+.+
T Consensus 50 ~g~mG~glpaAiGa~la----~p~r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~iiVlnN~~y--g~~~ 113 (193)
T cd03375 50 HTLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQIY--GLTK 113 (193)
T ss_pred hhhhccHHHHHHHHHHh----CCCCeEEEEeccchHhhccHHHHHHHHHhCCCeEEEEEcCccc--ccCC
Confidence 48999999999999999 79999999999999 6899999999999999999999999977 7655
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-14 Score=147.17 Aligned_cols=66 Identities=30% Similarity=0.416 Sum_probs=59.7
Q ss_pred CCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCC-CEEEEEEcCCee
Q psy14416 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL-PVILVIVNNNGI 239 (1065)
Q Consensus 167 ~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~l-pivivV~NN~gy 239 (1065)
.|.+++. .|+||+++|+|+|++++ .|+++||+++|||+|+|+.+||+|++++++ |+++||+||++|
T Consensus 40 ~~~~~~~---~g~mG~~lpaAiGaala----~p~~~Vv~i~GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~y 106 (188)
T cd03371 40 HAQDFLT---VGSMGHASQIALGIALA----RPDRKVVCIDGDGAALMHMGGLATIGGLAPANLIHIVLNNGAH 106 (188)
T ss_pred ccCceee---cCccccHHHHHHHHHHh----CCCCcEEEEeCCcHHHhhccHHHHHHHcCCCCcEEEEEeCchh
Confidence 3455554 38999999999999999 699999999999999999999999999997 699999999988
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=151.97 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=103.1
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++|+ |++++. |+++|| +++|||+|.++..++++
T Consensus 56 G~alPaAi--GaklA~--------Pd~~VV---------------------------------ai~GDG~f~~mg~~eL~ 92 (287)
T TIGR02177 56 GRALPVAT--GIKLAN--------PHLKVI---------------------------------VVGGDGDLYGIGGNHFV 92 (287)
T ss_pred ccHHHHHH--HHHHHC--------CCCcEE---------------------------------EEeCchHHHhccHHHHH
Confidence 88888887 999998 999999 99999997359999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCC--CCCccHHHHHHHcCCCeEe-eCCHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSL--GPSLRYEKMMAVFGHDGYL-CTTVPQI 1024 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~-~~~~~~l 1024 (1065)
++ +|+++|+++||+||++ |+..... .......|..+...+.... +.++++.++|+++|..+.. +.+.+||
T Consensus 93 tA-----~r~nl~I~vIVlNN~~-yGmt~gQ-~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~eL 165 (287)
T TIGR02177 93 AA-----GRRNVDITVIVHDNQV-YGLTKGQ-ASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVAHL 165 (287)
T ss_pred HH-----HHhCcCeEEEEEECHH-HHhhhcc-cccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHHHH
Confidence 99 9999999999999965 5533321 1000001111111111121 2356788888888887776 6999999
Q ss_pred HHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhHh
Q psy14416 1025 KQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLTN 1061 (1065)
Q Consensus 1025 ~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 1061 (1065)
+++|+++++. ++|+||||..+=-...|...+.|.+.
T Consensus 166 ~~ai~~Al~~-~GpslIeV~~pC~t~n~~~~~~~~~~ 201 (287)
T TIGR02177 166 KEIIKEAINH-KGYALVDILQPCVTYNKINTYEWYRE 201 (287)
T ss_pred HHHHHHHHhC-CCCEEEEEeCCCCCCCcccHHHHHHH
Confidence 9999999987 99999999987333334445667643
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=135.25 Aligned_cols=70 Identities=50% Similarity=0.796 Sum_probs=64.0
Q ss_pred CCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 166 ~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
..|..++....+|+||+++|.|+|++++ .|+++|++++|||+|+|+.+||+|++++++|+++||+||++|
T Consensus 34 ~~~~~~~~~~~~g~~G~~~~~a~Gaa~a----~~~~~vv~~~GDG~~~~~~~~l~ta~~~~~~~~~iv~nN~~~ 103 (168)
T cd00568 34 RRGRRFLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGY 103 (168)
T ss_pred CCCCcEEeCCCchhhhhhHHHHHHHHHh----CCCCcEEEEEcCcHHhccHHHHHHHHHcCCCcEEEEEECCcc
Confidence 3455566677789999999999999998 689999999999999999999999999999999999999977
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.1e-13 Score=138.85 Aligned_cols=58 Identities=26% Similarity=0.504 Sum_probs=55.2
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCC-CEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL-PVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~l-pivivV~NN~gy 239 (1065)
+|+||+++|+|+|++++ .| ++||+++|||+|+|+.+||+|++|+++ |+++||+||++|
T Consensus 41 ~g~mG~~lp~AiGaala----~~-~~vv~i~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~ 99 (179)
T cd03372 41 LGSMGLASSIGLGLALA----QP-RKVIVIDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAY 99 (179)
T ss_pred ccchhhHHHHHHHHHhc----CC-CcEEEEECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccc
Confidence 79999999999999998 56 999999999999999999999999995 799999999988
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.6e-13 Score=142.98 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=56.5
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCC-ccccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGs-f~m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
++||+++|+|+|++++ +|+|+||+++|||+ |+|++|||+|++|+++|+++||+||++| |+
T Consensus 62 gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~y--g~ 122 (235)
T cd03376 62 AAVASGIEAALKALGR----GKDITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAY--MN 122 (235)
T ss_pred HHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCccc--cc
Confidence 6999999999999887 79999999999999 5899999999999999999999999988 65
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-12 Score=142.59 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=62.9
Q ss_pred ccccccc-cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCC-ccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 171 RLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 171 ~l~~~~~-gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGs-f~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
++.+.++ ++||+++|+|+|++++ +|+++||+++|||+ |+|+.+||+|++|+|+|+++||+||++| |+.+
T Consensus 61 ~~~~~~~~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~y--Gmt~ 131 (286)
T PRK11867 61 YINTYGFHTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIY--GLTK 131 (286)
T ss_pred cccccchhhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHH--hhhc
Confidence 5555555 9999999999999999 79999999999995 9999999999999999999999999977 8765
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-12 Score=141.46 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=61.9
Q ss_pred ccccccc-cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCc-cccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 171 RLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF-GFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 171 ~l~~~~~-gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf-~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
++.+..+ ++||+++|+|+|+++| +|+++||+++|||+| +|+.+||+|++|+|+|+++||+||++| |+.+
T Consensus 62 yl~~~~~~g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~Y--G~t~ 132 (301)
T PRK05778 62 YFLSHGLHTLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNGIY--GLTK 132 (301)
T ss_pred hcccCccchhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCchh--hccc
Confidence 4444444 8999999999999999 799999999999997 599999999999999999999999987 7765
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-12 Score=139.02 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=58.1
Q ss_pred ccCCCcchhHHHHHHhh-hcccCCCCeEEEEeCCCCcc-ccHHHHHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 177 FGTMGVGLGFALAAALY-CNHYAPGKRVVCVQGDSAFG-FSGMELETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala-~~~~~p~rrvV~l~GDGsf~-m~~~eL~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
.|+||+++|+|+||+++ .+...|+|+||+++|||+|+ |++|+|+|++++++|+++||+||++| |+.
T Consensus 63 ~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~y--g~~ 130 (237)
T cd02018 63 ANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVY--SNT 130 (237)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccc--cCC
Confidence 48999999999999987 11224899999999999997 89999999999999999999999977 654
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=136.88 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=62.1
Q ss_pred cccccccc-cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc-ccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 170 HRLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG-FSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 170 ~~l~~~~~-gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~-m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
+++....+ +.||+++|+|+|++++ +|+++||+++|||+|+ |+.+||.|++|+|+|+++||+||++| ||.+
T Consensus 44 ~~l~~~~~~t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~y--Gmt~ 115 (287)
T TIGR02177 44 HYVNVNGFHGLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQVY--GLTK 115 (287)
T ss_pred CeEecCCcccccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccHHHHHHHHHhCcCeEEEEEECHHH--Hhhh
Confidence 45555555 4589999999999999 7999999999999975 99999999999999999999999977 7765
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-12 Score=139.67 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=57.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccc-cHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF-SGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m-~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
.++||+++|+|+|+++| +|+++||+++|||+|+| +.+|+.|++|+++|+++||+||++| ||.+
T Consensus 67 ~~~~G~alPaAiGaklA----~Pdr~VV~i~GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~y--Gmt~ 130 (277)
T PRK09628 67 HTTHGRAVAYATGIKLA----NPDKHVIVVSGDGDGLAIGGNHTIHGCRRNIDLNFILINNFIY--GLTN 130 (277)
T ss_pred eeccccHHHHHHHHHHH----CCCCeEEEEECchHHHHhhHHHHHHHHHhCcCeEEEEEEChHH--hcce
Confidence 36999999999999999 79999999999999974 7899999999999999999999977 8754
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=135.73 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=58.6
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
.+.||+++|+|+|++++ +|+++||+++|||+|+|. +|||+|++|+|+|+++||+||++| |+.+
T Consensus 59 ~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Y--g~t~ 122 (280)
T PRK11869 59 HTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVY--GLTK 122 (280)
T ss_pred CcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHH--hhhc
Confidence 57799999999999999 799999999999999987 999999999999999999999988 7643
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-11 Score=135.48 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=59.7
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCC-CccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDG-sf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
.++||+++|+|+|+++| +|+++||+++||| +|+|+.|||.|++|+|+|+++||+||+.| ||..
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~y--gmtg 121 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVY--GLTT 121 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhh--hhhc
Confidence 68999999999999999 7999999999999 79999999999999999999999999977 7764
|
|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=127.19 Aligned_cols=131 Identities=15% Similarity=0.013 Sum_probs=103.7
Q ss_pred eEEEEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccc
Q psy14416 859 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 938 (1065)
Q Consensus 859 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~ 938 (1065)
-+-...+++|+++++++ +++++..... ++++|+ +++|||+|
T Consensus 99 g~~~~~GslG~gl~~av--G~Ala~~~~~----~~~~v~---------------------------------~i~GDG~~ 139 (255)
T cd02012 99 GVEVTTGSLGQGLSVAV--GMALAEKLLG----FDYRVY---------------------------------VLLGDGEL 139 (255)
T ss_pred CeeeCCcchhhHHHHHH--HHHHHHHHhC----CCCEEE---------------------------------EEECcccc
Confidence 45566688899888888 8888764333 688999 99999999
Q ss_pred cCc--chhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE
Q psy14416 939 GGF--DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY 1016 (1065)
Q Consensus 939 ~~~--~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 1016 (1065)
++ ...++.++ .++++|.+++|+|||++ +... .. .......||.+++++||++++
T Consensus 140 -~~G~~~eal~~a-----~~~~l~~li~vvdnN~~-~~~~-----------~~------~~~~~~~~~~~~~~a~G~~~~ 195 (255)
T cd02012 140 -QEGSVWEAASFA-----GHYKLDNLIAIVDSNRI-QIDG-----------PT------DDILFTEDLAKKFEAFGWNVI 195 (255)
T ss_pred -cccHHHHHHHHH-----HHcCCCcEEEEEECCCc-cccC-----------cH------hhccCchhHHHHHHHcCCeEE
Confidence 65 46789999 99999988889999883 2110 00 122246899999999999999
Q ss_pred eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1017 LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1017 ~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
.|+ +.++|.++++++.+..++|++|++.|.+....+
T Consensus 196 ~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~kg~g~~ 233 (255)
T cd02012 196 EVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKGVP 233 (255)
T ss_pred EECCCCHHHHHHHHHHHHHcCCCCEEEEEEeecccccC
Confidence 999 999999999999865479999999998866654
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=130.59 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=90.2
Q ss_pred cccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc--h
Q psy14416 866 NNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD--E 943 (1065)
Q Consensus 866 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~--~ 943 (1065)
.+|.+++.++ |++++.+... |++.|+ ++.|||+| ++. .
T Consensus 123 ~vG~~lp~Ai--GaAla~k~~~----~~~~vv---------------------------------~~~GDGa~-~~g~~~ 162 (341)
T TIGR03181 123 PIGTQYLHAA--GVAYALKLRG----EDNVAV---------------------------------TYFGDGGT-SEGDFY 162 (341)
T ss_pred hHhcchhHHH--hHHHHHHhhC----CCCEEE---------------------------------EEecCCcc-ccChHH
Confidence 3466666665 6666654444 888999 99999999 766 3
Q ss_pred hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHH
Q psy14416 944 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQ 1023 (1065)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1023 (1065)
.++.++ .++++|+++||.||+ +....+.. ......||.++|++||+.+++|+..++
T Consensus 163 EaL~tA-----~~~~LPvi~Vv~NN~-~~~~~~~~------------------~~~~~~d~~~~a~a~G~~~~~Vdg~d~ 218 (341)
T TIGR03181 163 EALNFA-----GVFKAPVVFFVQNNQ-WAISVPRS------------------KQTAAPTLAQKAIAYGIPGVQVDGNDV 218 (341)
T ss_pred HHHHHH-----hccCCCEEEEEECCC-Cccccchh------------------hhhCCcCHHHHHhhCCCCEEEECCCCH
Confidence 678899 999999999999995 22122111 001357899999999999999999998
Q ss_pred H------HHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1024 I------KQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1024 l------~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
+ ++|++.+.+. ++|+|||+.+.|
T Consensus 219 ~av~~a~~~A~~~a~~~-~gP~lIev~t~R 247 (341)
T TIGR03181 219 LAVYAVTKEAVERARSG-GGPTLIEAVTYR 247 (341)
T ss_pred HHHHHHHHHHHHHHHcC-CCCEEEEEEeec
Confidence 6 8899999876 899999999966
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=118.45 Aligned_cols=64 Identities=28% Similarity=0.328 Sum_probs=59.2
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccc--cHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m--~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
..|+||+++|.|+|++++.....++++|+|++|||+|+| +.++|.++.++++|.+++|+||++|
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~ 168 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRI 168 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 459999999999999999877778999999999999998 5899999999999999999999977
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=120.13 Aligned_cols=84 Identities=26% Similarity=0.308 Sum_probs=68.4
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
++.||.|+....++ + .+..|+||+++|.|+|++++.+...|++++|+++|||+|+|. .++|.+++++++|+++||
T Consensus 85 G~~g~~h~~~~~~~-~--~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv 161 (293)
T cd02000 85 GRGGSMHIGDKEKN-F--FGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVC 161 (293)
T ss_pred CCCCCCCCCchhcC-c--cccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEE
Confidence 56677777443322 1 223689999999999999998888899999999999999987 478999999999999999
Q ss_pred EcCCeeeecccc
Q psy14416 234 VNNNGIYGGFDE 245 (1065)
Q Consensus 234 ~NN~gy~~g~~~ 245 (1065)
.||+ | ++..
T Consensus 162 ~NN~-~--~i~~ 170 (293)
T cd02000 162 ENNG-Y--AIST 170 (293)
T ss_pred eeCC-e--eccC
Confidence 9995 7 5543
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=121.25 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=89.1
Q ss_pred EeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc
Q psy14416 863 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 942 (1065)
Q Consensus 863 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~ 942 (1065)
..+.+|++++.++ +++++.+... |++.|+ +++|||+| ++.
T Consensus 102 ~~g~lG~~~p~a~--G~a~a~k~~~----~~~~vv---------------------------------~~~GDGa~-~~g 141 (293)
T cd02000 102 GNGIVGGQVPLAA--GAALALKYRG----EDRVAV---------------------------------CFFGDGAT-NEG 141 (293)
T ss_pred cccccccchhHHH--HHHHHHHHhC----CCCEEE---------------------------------EEeCCCcc-ccc
Confidence 3456688777777 7777765444 778888 99999999 665
Q ss_pred h--hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCC
Q psy14416 943 E--TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTT 1020 (1065)
Q Consensus 943 ~--~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 1020 (1065)
. .++.++ .++++|+++||.|| + |+...... ...+..||.+++++||+.+++|+.
T Consensus 142 ~~~E~l~~A-----~~~~lPvi~vv~NN-~-~~i~~~~~-----------------~~~~~~~~~~~a~a~G~~~~~Vdg 197 (293)
T cd02000 142 DFHEALNFA-----ALWKLPVIFVCENN-G-YAISTPTS-----------------RQTAGTSIADRAAAYGIPGIRVDG 197 (293)
T ss_pred hHHHHHHHH-----HhhCCCEEEEEeeC-C-eeccCCHH-----------------HHhCCccHHHHHHhCCCCEEEECC
Confidence 3 568888 89999999998888 5 44211110 001457899999999999999975
Q ss_pred --HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1021 --VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1021 --~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
++++.++++++++ ..++|+|||+.+.+
T Consensus 198 ~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r 229 (293)
T cd02000 198 NDVLAVYEAAKEAVERARAGGGPTLIEAVTYR 229 (293)
T ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Confidence 4577777766653 23799999999965
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-09 Score=118.90 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=86.1
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch-
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE- 943 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~- 943 (1065)
+.+|.+++.++ |++++...+. +++.|+ +++|||+| +...
T Consensus 110 g~~G~~lp~Ai--Gaa~A~~~~~----~~~~vv---------------------------------~~~GDGa~-~~g~~ 149 (315)
T TIGR03182 110 GIVGAQVPLAT--GLAFANKYRG----NDNVTA---------------------------------CFFGDGAA-NQGQF 149 (315)
T ss_pred CcccccccHHH--HHHHHHHHhC----CCCEEE---------------------------------EEeCCCcc-cccHH
Confidence 45588888877 8888775544 678888 99999999 5432
Q ss_pred -hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHH
Q psy14416 944 -TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVP 1022 (1065)
Q Consensus 944 -~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 1022 (1065)
.++.++ .++++|+++||.|| + |+...... . ..+..||.++|++||+.+++|+..+
T Consensus 150 ~ealn~A-----~~~~lPvi~vv~NN-~-yg~s~~~~-~----------------~~~~~~~a~~A~a~G~~~~~Vdg~d 205 (315)
T TIGR03182 150 YESFNMA-----ALWKLPVIFVIENN-L-YAMGTSVE-R----------------SSSVTDLYKRGESFGIPGERVDGMD 205 (315)
T ss_pred HHHHHHh-----hccCcCEEEEEEcC-C-ccccCCHH-H----------------HhCCcCHHHHHHhCCCCEEEECCCC
Confidence 346666 77899999999999 5 44322110 0 1135789999999999999999855
Q ss_pred H------HHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1023 Q------IKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1023 ~------l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
. +++|++.+.+. ++|+|||+.+.+
T Consensus 206 ~~av~~a~~~A~~~ar~~-~gP~lIe~~t~R 235 (315)
T TIGR03182 206 VLAVREAAKEAVERARSG-KGPILLEMKTYR 235 (315)
T ss_pred HHHHHHHHHHHHHHHHcc-CCCEEEEEeCCc
Confidence 3 45566655554 799999999955
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-09 Score=117.67 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=67.5
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
||.||.|+.. +..-+ .+..|+||+++|.|+|++++.+...+++.||+++|||+|++. .++|.++.++++|+++||
T Consensus 91 Gr~g~~h~~~--~~~~~-~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv 167 (315)
T TIGR03182 91 GKGGSMHMFD--REKNF-YGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVI 167 (315)
T ss_pred CCCCCCCcCc--hhhCc-ccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEE
Confidence 6677777733 22222 234689999999999999998777789999999999999876 377999999999999999
Q ss_pred EcCCeeeecccc
Q psy14416 234 VNNNGIYGGFDE 245 (1065)
Q Consensus 234 ~NN~gy~~g~~~ 245 (1065)
+||+ | |+..
T Consensus 168 ~NN~-y--g~s~ 176 (315)
T TIGR03182 168 ENNL-Y--AMGT 176 (315)
T ss_pred EcCC-c--cccC
Confidence 9994 7 5544
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-09 Score=104.53 Aligned_cols=99 Identities=24% Similarity=0.426 Sum_probs=75.6
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCC------CCCCCCCCcccccH-------HHHhhh
Q psy14416 490 KQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG------KGVVPDAHPNCVSA-------ARTHAL 556 (1065)
Q Consensus 490 ~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~g------kg~v~~~hpl~lg~-------~~~~al 556 (1065)
++++++|++||||+|++|.++.+.++.+++++|+|++++||++++++ ||++ +||..+|. ...+.+
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~g~~~~~p~~e~~ 95 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEITQFLADPSWEGF 95 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHHHHhccCchhhhc
Confidence 56788899999999999999987888999999999999999999998 8887 66666663 234556
Q ss_pred ---cCCCEEEEeCCcccccc-ccCCCccccCCCeEEEec
Q psy14416 557 ---QNADLVLLLGARLNWIL-HFGRAPRFKSNVKIIQVD 591 (1065)
Q Consensus 557 ---~~aDlVI~iG~~~~~~~-~~g~~~~~~~~~~iI~Vd 591 (1065)
.++|+||.+|+++.-.. ...-++.|. +.+.|.++
T Consensus 96 ~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 96 DGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred cCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEec
Confidence 79999999999884211 111233354 55666555
|
Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis. |
| >PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=104.54 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=76.7
Q ss_pred HHHHHHHHhCCCcEEEEccCCCc-hhHHHHHHHHHhhcCCCEEecCC------CCCCCCCCCcccccHH-------HHhh
Q psy14416 490 KQASRLILEAKAPLVIIGKGAAY-SQAETELLSFVNSFNLPFLPTPM------GKGVVPDAHPNCVSAA-------RTHA 555 (1065)
Q Consensus 490 ~~~ae~L~~AkrPvIlvG~g~~~-~~a~~~L~~LAe~lg~PV~tt~~------gkg~v~~~hpl~lg~~-------~~~a 555 (1065)
+.++++|++||||+|++|.++.. .++.+++++|+|++++||+++++ +||++++ |..+|.. ..+.
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~e~ 102 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNWKG 102 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchhhh
Confidence 56788999999999999999987 77889999999999999999999 8899887 7777642 3445
Q ss_pred h---cCCCEEEEeCCcccccc-ccCCCccccCCCeEEEec
Q psy14416 556 L---QNADLVLLLGARLNWIL-HFGRAPRFKSNVKIIQVD 591 (1065)
Q Consensus 556 l---~~aDlVI~iG~~~~~~~-~~g~~~~~~~~~~iI~Vd 591 (1065)
+ .++|+||.+|+++.... ...-++.|.+ .+.|.++
T Consensus 103 ~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~ 141 (171)
T PRK00945 103 LDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITID 141 (171)
T ss_pred hcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEec
Confidence 5 69999999999986321 1112334555 5666555
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.8e-08 Score=120.46 Aligned_cols=114 Identities=17% Similarity=-0.007 Sum_probs=75.6
Q ss_pred eEE-EccCCchHHHHHHHHHHHh-CCCeEEEEeccccccccccccccccccCcceEeecCCCccCC-CCCCCCCccChhh
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVE 382 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~t-gkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~-~g~ga~Q~idQ~~ 382 (1065)
|++ .-.-|+++.-+|.|+|... .+|.+ .|..+=+.-++.++..+...+.|++++........ ..-..+|.+++..
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv~--~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia 445 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPFG--GTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLA 445 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEEE--EEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHH
Confidence 455 3677999999999999765 34333 33333344455556666678889998865443322 2234568888888
Q ss_pred hhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 383 LARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 383 l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+++.+.... +...++.++...++.|++ ..++||+|-+|.
T Consensus 446 ~~r~iP~~~V~~P~d~~e~~~~l~~a~~----~~~~P~~ir~~r 485 (624)
T PRK05899 446 SLRAIPNLTVIRPADANETAAAWKYALE----RKDGPSALVLTR 485 (624)
T ss_pred HHHhCCCcEEEeCCCHHHHHHHHHHHHH----cCCCCEEEEEeC
Confidence 999887765 445677766666666653 335899999984
|
|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=117.02 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=57.7
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
.+++|+++|.|+|++++.+.+.|+++|||+.|||+|+|+ .++|.|++++++|+++||+||+
T Consensus 121 ~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~ 183 (341)
T TIGR03181 121 NIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ 183 (341)
T ss_pred CchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC
Confidence 478999999999999998888899999999999999999 5889999999999999999996
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=113.22 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=63.8
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccC-------CCCeEEEEeCCCCcccc--HHHHHHhhhcC
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYA-------PGKRVVCVQGDSAFGFS--GMELETLVRYR 226 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~-------p~rrvV~l~GDGsf~m~--~~eL~t~vr~~ 226 (1065)
||-|+.|+.. .+..++ +.+++||+++|.|+|++++.+... |++.|||++|||+|+.. .++|.++++++
T Consensus 109 Gr~gs~H~~~-~~~~~~--~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~ 185 (341)
T CHL00149 109 GRGGSMHIFS-APHNFL--GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWK 185 (341)
T ss_pred CCCCCccccc-hhcCcc--CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcC
Confidence 6778777743 444455 467999999999999999864432 78999999999999732 23699999999
Q ss_pred CCEEEEEEcCC
Q psy14416 227 LPVILVIVNNN 237 (1065)
Q Consensus 227 lpivivV~NN~ 237 (1065)
+|+++||.||+
T Consensus 186 LPvifvv~NN~ 196 (341)
T CHL00149 186 LPIIFVVENNQ 196 (341)
T ss_pred CCEEEEEEeCC
Confidence 99999999997
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=125.23 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=100.9
Q ss_pred cceEEEEeccccccccccchhhhhheeccccc------cccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 857 LPVILVIVNNNGIYGGFDETTYASIVESGEVT------TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 857 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
.|-+....+++|.+++.++ |++++...... ....+++|+
T Consensus 110 ~~~~~~~~G~lG~gl~~Ai--G~Ala~~~~~~~~~~~~~~~~~~~v~--------------------------------- 154 (624)
T PRK05899 110 TPGVETTTGPLGQGLANAV--GMALAEKYLAALFNRPGLDIVDHYTY--------------------------------- 154 (624)
T ss_pred CCCeeeCCcchhhhHHHHH--HHHHHHHHhhhhcCCccccCcCCeEE---------------------------------
Confidence 4666666788888888888 88887632110 000156788
Q ss_pred EEeccccccCcch-hh-HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFDE-TT-YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||+| ++.. +| +.++ .+++||.+++|+|||++ +. . +.. ......||.+++
T Consensus 155 ~v~GDG~~-~~g~~~Eal~~A-----~~~~L~~li~v~dnN~~-~~-~----------~~~-------~~~~~~~~~~~~ 209 (624)
T PRK05899 155 VLCGDGDL-MEGISHEACSLA-----GHLKLGNLIVIYDDNRI-SI-D----------GPT-------EGWFTEDVKKRF 209 (624)
T ss_pred EEECcchh-hchHHHHHHHHH-----HHhCCCCEEEEEECCCC-cc-c----------ccc-------cccccccHHHHh
Confidence 99999999 7775 44 8888 88999999999999983 21 1 000 111247899999
Q ss_pred HHcCCCeEeeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1009 AVFGHDGYLCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1009 ~~~g~~~~~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
++||+++.+|+ +.++|.++++++.+. ++|++|++.|.+....
T Consensus 210 ~a~G~~~~~VdG~d~~~l~~al~~a~~~-~~P~vI~v~t~kg~g~ 253 (624)
T PRK05899 210 EAYGWHVIEVDGHDVEAIDAAIEEAKAS-TKPTLIIAKTIIGKGA 253 (624)
T ss_pred ccCCCeEEEECCCCHHHHHHHHHHHHhc-CCCEEEEEEeEeccCC
Confidence 99999999999 999999999999876 8999999999765554
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.1e-08 Score=118.62 Aligned_cols=242 Identities=16% Similarity=0.116 Sum_probs=143.9
Q ss_pred cccCCCcchhHHHHHHhhhccc-CCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeee------------
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY-APGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIY------------ 240 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~-~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~------------ 240 (1065)
..|++|+++|.|+|++++.+.. .++++|+|++|||+++ |+.++|.++.+++.|++ +|+||++|.
T Consensus 115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli-~IvdnN~~~i~~~~~~~~~~~ 193 (580)
T PRK05444 115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLI-VILNDNEMSISPNVGALSNYL 193 (580)
T ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEE-EEEECCCCcCCCcchhhhhhh
Confidence 3689999999999999997665 5889999999999996 89999999999998885 666666661
Q ss_pred -----------eccccc-h---hhhhhhhhc--------------------cCCC---cccc------------------
Q psy14416 241 -----------GGFDEA-T---YAWLDIIKK--------------------SNMS---EDYD------------------ 264 (1065)
Q Consensus 241 -----------~g~~~~-~---~~~~~l~~~--------------------~g~~---~~~~------------------ 264 (1065)
+|.... . .+...+... .+.+ .+..
T Consensus 194 ~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~~~~~~ 273 (580)
T PRK05444 194 ARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETGEQPKS 273 (580)
T ss_pred ccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccCCcccc
Confidence 000000 0 111111100 0000 0000
Q ss_pred ---cCccHHHHHHHHHHhcCc--eEEEee-cC---C-chhhhHHHhhcCCceEE-EccCCchHHHHHHHHHHHhCCCeEE
Q psy14416 265 ---EELSANQVIAQALKFQGI--EYVFGI-VG---I-PVIELAMACQQEGIHYI-GMRNEQAACYAAQAIGYLTKKPGVC 333 (1065)
Q Consensus 265 ---~~~~~~~~l~~~L~~~GV--~~vfg~-pG---~-~~~~l~~al~~~~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~ 333 (1065)
...+..+++.++|.+..= ..++++ ++ + ....+.+.+ .=|++ .-.-|++.+-+|.|+|. .|...++
T Consensus 274 ~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~---p~R~i~~GIaE~~mvg~A~GlA~-~G~~p~~ 349 (580)
T PRK05444 274 SKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRF---PDRYFDVGIAEQHAVTFAAGLAT-EGLKPVV 349 (580)
T ss_pred CCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHh---hhhccCCChHHHHHHHHHHHHHH-CCCeeEE
Confidence 001234455555554422 233432 22 1 112222222 12433 45678999999999998 4543333
Q ss_pred EEecccccccccccccc-ccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEE-eeCCChhhHHHHHHHHHHHh
Q psy14416 334 LVVSGPGLLHTFGGMAN-AQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYS-ARPPNIHLIGQHVEKAVRLS 411 (1065)
Q Consensus 334 ~~tsGpG~~N~~~av~e-A~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A 411 (1065)
.|..+=+.-++..+.. +-..+.|++++..........-..+|.+.+..+++.+..+. +...++.++...++.|++
T Consensus 350 -~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~-- 426 (580)
T PRK05444 350 -AIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALA-- 426 (580)
T ss_pred -EeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh--
Confidence 3344433333443333 55689999999643333222234578888899999998875 455676666666655553
Q ss_pred hcCCCCEEEEecChhh
Q psy14416 412 TFGKPGVSYLDFPANL 427 (1065)
Q Consensus 412 ~~~~~GPV~L~iP~Dv 427 (1065)
..+|||+|-+|...
T Consensus 427 --~~~~P~~ir~~r~~ 440 (580)
T PRK05444 427 --YDDGPIAIRYPRGN 440 (580)
T ss_pred --CCCCcEEEEecCCC
Confidence 33699999998654
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-08 Score=113.87 Aligned_cols=120 Identities=21% Similarity=0.187 Sum_probs=87.5
Q ss_pred eccccccccccchhhhhheeccccc---cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVT---TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 940 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~ 940 (1065)
.+.+|.+++.++ |++++...+.. +..|++.|+ +++|||+| +
T Consensus 127 ~g~lG~~lp~Av--Gaa~A~k~~~~~~~~~~~~~vvv---------------------------------~~~GDGa~-~ 170 (341)
T CHL00149 127 FAFIGEGIPIAL--GAAFQSIYRQQVLKEVQPLRVTA---------------------------------CFFGDGTT-N 170 (341)
T ss_pred ChhhhccHHHHH--HHHHHHHHhccccccCCCCCEEE---------------------------------EEeCCchh-h
Confidence 355588888877 88887432210 112577888 99999999 4
Q ss_pred cchh---hHHHhhccCccccCCCEEEEEEcCC-cccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeE
Q psy14416 941 FDET---TYASIVESGEVTTVLPVILVIVNNN-GIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGY 1016 (1065)
Q Consensus 941 ~~~~---~~~~~~~~~~~~~~~~~~~~v~nn~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 1016 (1065)
..+ ++.++ .++++|+++||.||+ +| +. +.. . .....||.+.|++||+.++
T Consensus 171 -~G~~~Ealn~A-----~~~~LPvifvv~NN~~~i-~~-~~~-----------------~-~~~~~d~a~~a~a~G~~~~ 224 (341)
T CHL00149 171 -NGQFFECLNMA-----VLWKLPIIFVVENNQWAI-GM-AHH-----------------R-STSIPEIHKKAEAFGLPGI 224 (341)
T ss_pred -hcHHHHHHHHH-----hhcCCCEEEEEEeCCeee-ec-chh-----------------h-eeCCccHHHHHHhCCCCEE
Confidence 433 46666 789999999999997 33 21 110 0 0124789999999999999
Q ss_pred eeCCHHHH------HHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1017 LCTTVPQI------KQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1017 ~~~~~~~l------~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+|+..+.+ ++|++++.+. ++|+|||+.+-
T Consensus 225 ~Vdg~d~~av~~a~~~A~~~ar~~-~gP~lIev~ty 259 (341)
T CHL00149 225 EVDGMDVLAVREVAKEAVERARQG-DGPTLIEALTY 259 (341)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCEEEEEEEe
Confidence 99998874 7888888875 89999999993
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-07 Score=109.68 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=72.6
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccc-ccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccc
Q psy14416 310 MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGM-ANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYC 388 (1065)
Q Consensus 310 ~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av-~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~ 388 (1065)
-.-|++++-+|.|+|. .|...++ .|..+=+.-++..| .++-..+.|++++.-.....-.+-..+|.+.+..+++.+-
T Consensus 367 GIaE~~mvg~AaGlA~-~G~~P~v-~~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iP 444 (641)
T PRK12571 367 GIAEQHAVTFAAGLAA-AGLKPFC-AVYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLP 444 (641)
T ss_pred CccHHHHHHHHHHHHH-CCCEEEE-EehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCC
Confidence 3468888889999998 5543333 33555444566666 4467789999987622221111223578888889999998
Q ss_pred cEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 389 KYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 389 k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
.+.. ...++.++...++.|++ ...||++|-+|..
T Consensus 445 nl~V~~Psd~~e~~~~l~~a~~----~~~~P~~ir~~r~ 479 (641)
T PRK12571 445 NMTVMAPRDEAELRHMLRTAAA----HDDGPIAVRFPRG 479 (641)
T ss_pred CCEEEeeCCHHHHHHHHHHHHh----CCCCcEEEEEecC
Confidence 8754 45666666666666653 2369999999965
|
|
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.3e-07 Score=104.24 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=61.4
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhccc-------CCCCeEEEEeCCCCcccc--HHHHHHhhhcC
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHY-------APGKRVVCVQGDSAFGFS--GMELETLVRYR 226 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~-------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~ 226 (1065)
++-|+.|+. .+..-+ .+.++.||+++|.|+|++++.+.. .+++.|||++|||+++.. .++|.+++.++
T Consensus 175 GrggsmH~~--~~~~~~-~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~ 251 (433)
T PLN02374 175 GQGGSMHMF--SKEHNL-LGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWK 251 (433)
T ss_pred CCCCcCccC--chhhCC-CCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhC
Confidence 455556662 222222 245789999999999999997654 368999999999999755 45899999999
Q ss_pred CCEEEEEEcCC
Q psy14416 227 LPVILVIVNNN 237 (1065)
Q Consensus 227 lpivivV~NN~ 237 (1065)
+|+++||.||.
T Consensus 252 LPvIfVV~NN~ 262 (433)
T PLN02374 252 LPIVFVVENNL 262 (433)
T ss_pred CCEEEEEeCCC
Confidence 99999999996
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.4e-07 Score=94.03 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=55.1
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCC
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~ 237 (1065)
..|++|+++|.|+|++++.+...++++|+|++|||+++ |..++|.+++++++|+++||-||+
T Consensus 73 ~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~ 136 (195)
T cd02007 73 GTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNE 136 (195)
T ss_pred CCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCC
Confidence 46899999999999999987767789999999999998 888999999999889888666664
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=102.85 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=66.2
Q ss_pred EEeccccccCcch--hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFDE--TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ +... .++.++ ..+++|++.||.||+..++ .+.. ......|+.+.|
T Consensus 228 ~~~GDGa~-~eG~f~EaLn~A-----~~~~LPvIfVV~NN~yaig-~~~~------------------~~t~~~dia~~A 282 (433)
T PLN02374 228 AFFGDGTC-NNGQFFECLNMA-----ALWKLPIVFVVENNLWAIG-MSHL------------------RATSDPEIWKKG 282 (433)
T ss_pred EEECCCcc-ccChHHHHHHHH-----HHhCCCEEEEEeCCCEeec-ceee------------------eccCCCCHHHHH
Confidence 99999999 4321 155556 7799999999999962111 1110 001346899999
Q ss_pred HHcCCCeEeeCCHHHH------HHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1009 AVFGHDGYLCTTVPQI------KQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1009 ~~~g~~~~~~~~~~~l------~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
++||+.+++|+..+.+ ++|++.+.+. ++|+|||+.+-
T Consensus 283 ~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g-~gP~LIe~~ty 325 (433)
T PLN02374 283 PAFGMPGVHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY 325 (433)
T ss_pred HhcCCcEEEECCCCHHHHHHHHHHHHHHHHHc-CCCEEEEEEEE
Confidence 9999999999988866 6788888765 89999999983
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=107.41 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=94.3
Q ss_pred ceEEEEeccccccccccchhhhhheeccc-cccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccc
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGE-VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG 936 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 936 (1065)
|-+-...|+.|.+++.+. |++++.... . ++++|+ +++|||
T Consensus 110 ~~~~~~~G~lG~gl~~Av--G~A~a~~~~~~----~~~~v~---------------------------------~i~GDG 150 (580)
T PRK05444 110 EYDTFGAGHSSTSISAAL--GMAKARDLKGG----EDRKVV---------------------------------AVIGDG 150 (580)
T ss_pred CCeeECCChHHHHHHHHH--HHHHHHHhhCC----CCCeEE---------------------------------EEEccc
Confidence 445555666677777666 777766433 2 567889 999999
Q ss_pred ccc-CcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCe
Q psy14416 937 IYG-GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDG 1015 (1065)
Q Consensus 937 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 1015 (1065)
++. ++...++.++ .++++|+ ++|+|||++ + ....+ +... ......+..+.+++||.++
T Consensus 151 ~l~eG~~~Eal~~A-----~~~~~nl-i~IvdnN~~-~-i~~~~-------~~~~------~~~~~~~~~~~~~a~G~~~ 209 (580)
T PRK05444 151 ALTGGMAFEALNNA-----GDLKSDL-IVILNDNEM-S-ISPNV-------GALS------NYLARLRSSTLFEELGFNY 209 (580)
T ss_pred ccccCHHHHHHHHH-----HhhCCCE-EEEEECCCC-c-CCCcc-------hhhh------hhhccccHHHHHHHcCCCe
Confidence 994 4777888888 8889999 477777773 2 11110 0000 0012255678899999999
Q ss_pred Eee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1016 YLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1016 ~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
..+ ++.++|.++++++.+. ++|++|++.|.+....
T Consensus 210 ~~~vdG~d~~~l~~al~~a~~~-~~P~lI~~~T~kg~G~ 247 (580)
T PRK05444 210 IGPIDGHDLDALIETLKNAKDL-KGPVLLHVVTKKGKGY 247 (580)
T ss_pred eeeeCCCCHHHHHHHHHHHHhC-CCCEEEEEEecCCcCC
Confidence 865 8999999999999876 8999999999876653
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=90.62 Aligned_cols=116 Identities=10% Similarity=0.069 Sum_probs=80.6
Q ss_pred EEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC-
Q psy14416 862 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG- 940 (1065)
Q Consensus 862 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~- 940 (1065)
...+++|.+++.+. +++++..... ++++|+ +++|||.+ +
T Consensus 72 ~~~G~lG~gl~~A~--G~Ala~k~~~----~~~~vv---------------------------------~~~GDG~~-~e 111 (195)
T cd02007 72 FGTGHSSTSISAAL--GMAVARDLKG----KKRKVI---------------------------------AVIGDGAL-TG 111 (195)
T ss_pred ECCCchhhhHHHHH--HHHHHHHHhC----CCCeEE---------------------------------EEEccccc-cc
Confidence 34455566666665 7777764333 467888 99999999 4
Q ss_pred -cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEe--
Q psy14416 941 -FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYL-- 1017 (1065)
Q Consensus 941 -~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 1017 (1065)
+.-.++.++ .++.+|+++||.|| ++ +. .+++. +.+..++++|.+...
T Consensus 112 G~~~Eal~~A-----~~~~~~li~vvdnN-~~-~~------------------~~~~~-----~~~~~~~a~G~~~~~~v 161 (195)
T cd02007 112 GMAFEALNNA-----GYLKSNMIVILNDN-EM-SI------------------SPNVG-----TPGNLFEELGFRYIGPV 161 (195)
T ss_pred ChHHHHHHHH-----HHhCCCEEEEEECC-Cc-cc------------------CCCCC-----CHHHHHHhcCCCccceE
Confidence 444567777 77788998855554 62 10 01111 467788889887653
Q ss_pred -eCCHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 1018 -CTTVPQIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 1018 -~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
..+.+++.++++++.+. ++|++|++.|.+.
T Consensus 162 dG~d~~~l~~a~~~a~~~-~~P~~I~~~T~kg 192 (195)
T cd02007 162 DGHNIEALIKVLKEVKDL-KGPVLLHVVTKKG 192 (195)
T ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEEEEecc
Confidence 36899999999999875 8999999998653
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=89.92 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=77.2
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCC-----CCCCccHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTS-----LGPSLRYE 1005 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 1005 (1065)
++.|||.+.....+.+..+ ++.+.|+++||+||.. |..-... ...-...|..+++.|... ..+..|+.
T Consensus 96 ~~~GDG~~~dIG~~~L~~a-----~~r~~ni~~ivlDNe~-Y~nTGgQ-~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~ 168 (299)
T PRK11865 96 AIGGDGGTADIGFQSLSGA-----MERGHNILYLMYDNEA-YMNTGIQ-RSGSTPFGASTTTSPAGKYSRGEDRPKKNMP 168 (299)
T ss_pred EEeCCchHhhccHHHHHHH-----HHcCCCeEEEEECCcc-ccCCCCC-CCCCCCCCcccccCCCCcccCCCCCCCCCHH
Confidence 9999998833345677777 7789999999999954 5522111 001112233344344332 34579999
Q ss_pred HHHHHcCCCeE---eeCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1006 KMMAVFGHDGY---LCTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1006 ~~~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
++|.++|+.|+ .+.+..++.++++++++. ++|++|++..+
T Consensus 169 ~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~-~Gps~I~v~sP 211 (299)
T PRK11865 169 LIMAAHGIPYVATASIGYPEDFMEKVKKAKEV-EGPAYIQVLQP 211 (299)
T ss_pred HHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC-CCCEEEEEECC
Confidence 99999999987 467889999999999986 99999999874
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-05 Score=93.19 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=51.4
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
-|+.|.+++.|+|.++|.+...++.+++|++|||+++=. -+.+..+..+++|. ++|+||++|
T Consensus 110 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~ 173 (617)
T TIGR00204 110 AGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEM 173 (617)
T ss_pred CCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCc
Confidence 466788999999999998888899999999999998754 56677788999998 556666666
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.1e-05 Score=92.20 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=51.0
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
-|+.|.+++.|+|.++|..+...+++|++++|||+++=. -+.|-.+..+++|+++||-||+
T Consensus 143 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~ 205 (677)
T PLN02582 143 TGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 205 (677)
T ss_pred cchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCC
Confidence 578899999999999998887889999999999998754 5566677788999777777775
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.9e-05 Score=92.87 Aligned_cols=113 Identities=13% Similarity=-0.098 Sum_probs=80.7
Q ss_pred EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEee-cCCCccCCCCCCCCCccChhhhhccc
Q psy14416 309 GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI-GGSCAQDHEGIGGFQECPQVELARPY 387 (1065)
Q Consensus 309 ~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvI-tg~~p~~~~g~ga~Q~idQ~~l~~~~ 387 (1065)
...-|++++-+|.|+|...|. -.+++|..+=+.=+...|..+-..+.||+++ |.+.-.--.+-..+|.+.+..++|.+
T Consensus 407 ~GIaEq~mv~~aaGlA~~~G~-~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~i 485 (663)
T PRK12753 407 YGVREFGMTAIANGIAHHGGF-VPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLT 485 (663)
T ss_pred eeecHHHHHHHHHHHHHhCCC-eEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcC
Confidence 566788999999999987665 3345666666667778888888999999998 55544443444578999999999998
Q ss_pred ccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 388 CKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 388 ~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
..... +..+..++ ..+++.|.....||+||-+|..
T Consensus 486 Pn~~v~~PaD~~E~----~~~~~~al~~~~gP~~irl~R~ 521 (663)
T PRK12753 486 PNFSTWRPCDQVEA----AVAWKLAIERHNGPTALILSRQ 521 (663)
T ss_pred CCCEEEccCCHHHH----HHHHHHHHhcCCCCEEEEecCC
Confidence 77543 34444433 4455555544569999999854
|
|
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.7e-06 Score=78.73 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=107.3
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|++|+.++++.+.|++.|+++...+|.+....++.-+.+. .|..|....|..+...+.|-+.+-+||+.++-.+| ..
T Consensus 1 ~~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lG 78 (172)
T COG4032 1 MYKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LG 78 (172)
T ss_pred CcccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cc
Confidence 6789999999999999999999999999999999888654 47777777777777777787777778888776766 66
Q ss_pred hhhHHHhhcc-cCCCcEEEEecCCCCCcCccCCCcc---cchhhhcccccceeccCCCcccHHHHHHHHHHHhhc
Q psy14416 85 HTFGGMANAQ-INCWPMLVIGGSCAQDHEGIGGFQE---CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 155 (1065)
Q Consensus 85 N~l~gla~A~-~~~~Pll~Isg~~~~~~~g~~~~Q~---~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~ 155 (1065)
|.+++|++-+ ..++|+++|.+.+.....+..+ |. --..++.+.+---.+.+.+|++....+..|+..+..
T Consensus 79 NsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~A-QVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~ 152 (172)
T COG4032 79 NSINALASLYVTYKIPLLMLASHRGVLKEGIEA-QVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFE 152 (172)
T ss_pred hHHHHHHHHHHHhccchhhhhhccchhhcCCcc-ccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 7777777643 4689999998544332221111 10 011234444444578889999988999999988864
|
|
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.9e-05 Score=86.64 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=114.7
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
-|+|.++++....+.|++.+.+.|+++..++.+.|.+ .+..++.+-+|.+|..||.|-+. +|.. ++..|||||+
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~-aG~R-a~taTSg~G~ 82 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASM-SGVK-SMTASSGPGI 82 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHh-hCCC-EEeecCCchH
Confidence 4799999999999999999999999999999988753 46889999999999999999665 4533 6677999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCC---Ccccchhhhcc---cccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG---FQECPQVELAR---PYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~---~Q~~dq~~l~~---~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
+-+.-.+.-|...++|++++..+++....|... ++++.+ ...+ .+.+-.....+++++-..+.+|++.|-.-+
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~-~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~ 161 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQ-AKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFM 161 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHHH-HhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999886643333221 122211 1111 223345556777778888889999886433
Q ss_pred Cccccc
Q psy14416 158 PGRSLL 163 (1065)
Q Consensus 158 pGP~~l 163 (1065)
-|+.+
T Consensus 162 -~PViv 166 (375)
T PRK09627 162 -TPVFL 166 (375)
T ss_pred -CceEE
Confidence 45444
|
|
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=9e-05 Score=86.38 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=118.7
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
.-++|.++++....+.||+.+++.|+++..++.+.|.+ .+..++..-+|.+|..||.|-+. +|.. ++..|||||
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~-aG~R-a~TaTSg~G 82 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASW-AGAK-AMTATSGPG 82 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHh-hCCC-eEeecCCCc
Confidence 45799999999999999999999999999999998864 25789999999999999999665 4534 567799999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCcc---CCCcccchhhh--cccccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVEL--ARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~---~~~Q~~dq~~l--~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
+.-+.-++.-|...++|++++..+++....|. ..+++.++... ...+-.-.....++.++-+.+.+|++.|-.-+
T Consensus 83 l~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~ 162 (376)
T PRK08659 83 FSLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYR 162 (376)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHC
Confidence 99999999998888999999998887543332 33334332211 01233445666777888888899999987654
Q ss_pred Cccccc
Q psy14416 158 PGRSLL 163 (1065)
Q Consensus 158 pGP~~l 163 (1065)
-|+.+
T Consensus 163 -~PViv 167 (376)
T PRK08659 163 -TPVIV 167 (376)
T ss_pred -CCEEE
Confidence 46655
|
|
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.8e-05 Score=89.41 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=123.7
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG 340 (1065)
.-+++.++++....+.||+.+++.|+++.+++.+.+.+ -+..++..-+|.+|..||.|-+.+-.| ++..|||||
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~TaTSg~G 82 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK--AMTATSGPG 82 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC--eEeecCCCc
Confidence 35789999999999999999999999999999888744 256899999999999999988765444 667899999
Q ss_pred ccccccccccccccCcceEeecCCCccCCCCC---CCCCccChhhhhc---ccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 341 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVELAR---PYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 341 ~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~---ga~Q~idQ~~l~~---~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
++=..-++.-|...++|+|++..+|+-...|. ...++.++. .+. .+-+......+++++-....+|++.|...
T Consensus 83 l~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~-~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~ 161 (376)
T PRK08659 83 FSLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQA-RWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKY 161 (376)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHH-hcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998654332 233333322 222 34455677789999999999999999754
Q ss_pred CCCEEEEecCh
Q psy14416 415 KPGVSYLDFPA 425 (1065)
Q Consensus 415 ~~GPV~L~iP~ 425 (1065)
+ -||.+..-.
T Consensus 162 ~-~PViv~~D~ 171 (376)
T PRK08659 162 R-TPVIVLADE 171 (376)
T ss_pred C-CCEEEEech
Confidence 4 488776543
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0033 Score=75.39 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=102.7
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--C---CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--E---GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~---~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
+-+-+++++.+-+.||..+-|.||++++.+.+.|.+ + ++.+=-..||-.|.-+|.|- ...|.-+++..- .+|+
T Consensus 16 llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA-~~~G~ral~~mK-hVGl 93 (640)
T COG4231 16 LLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGA-SYAGVRALVTMK-HVGL 93 (640)
T ss_pred hccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHh-hhcCceeeEEec-cccc
Confidence 456789999999999999999999999999998854 2 46666789999999888884 444543443331 3332
Q ss_pred ccccccccccccc--CcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEE
Q psy14416 342 LHTFGGMANAQIN--CWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 342 ~N~~~av~eA~~~--~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV 419 (1065)
==+.=.+..+.+. +=-||+|+||-|..+--+.. | |-..+++...-+..+..++..+.+.+..||..+.... -||
T Consensus 94 NvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSqne-q--dsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~-~pV 169 (640)
T COG4231 94 NVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQNE-Q--DSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSG-LPV 169 (640)
T ss_pred ccchhhhhhhhhcCccccEEEEEccCCCcccccch-h--HhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhC-CCE
Confidence 2112222222222 33689999998876533222 1 1122333334477888899999999999999886433 467
Q ss_pred EEecChhh
Q psy14416 420 YLDFPANL 427 (1065)
Q Consensus 420 ~L~iP~Dv 427 (1065)
-|-.=.++
T Consensus 170 ilr~ttr~ 177 (640)
T COG4231 170 ILRTTTRV 177 (640)
T ss_pred EEEEEeee
Confidence 66554443
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=91.48 Aligned_cols=116 Identities=16% Similarity=0.029 Sum_probs=81.5
Q ss_pred eEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeec-CCCccCCCCCCCCCccChhhh
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG-GSCAQDHEGIGGFQECPQVEL 383 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvIt-g~~p~~~~g~ga~Q~idQ~~l 383 (1065)
|++ ...-|++++-+|.|+|...|. -.+++|..+=+.=++..+..+-..+.|++++. .+.-.--.+-..+|.+.+..+
T Consensus 404 rfi~~GIaEq~mv~~AaGlA~~~G~-~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~ 482 (661)
T PTZ00089 404 RYIRFGVREHAMCAIMNGIAAHGGF-IPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLAL 482 (661)
T ss_pred CeeeeeecHHHHHHHHHHHHHcCCC-eEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHH
Confidence 544 667899999999999996663 33345666666677788899999999999984 444333333456899999999
Q ss_pred hcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 384 ARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 384 ~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
+|.+..-.. +..++.++.. +++.|.....||++|-+|..
T Consensus 483 lR~iPn~~V~~PaD~~E~~~----~l~~al~~~~gP~~irl~R~ 522 (661)
T PTZ00089 483 LRATPNLLVIRPADGTETSG----AYALALANAKTPTILCLSRQ 522 (661)
T ss_pred HhcCCCcEEEecCCHHHHHH----HHHHHHHcCCCCEEEEecCC
Confidence 999876543 4445554444 44545434569999999965
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.9e-05 Score=85.05 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=76.5
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
.+.|||.+..-....+..+ ...++|+++||+||.. |...... ...-...|..+++.+.....+..|..++|.+
T Consensus 97 a~~GDG~~~~~g~~~l~~A-----~~~~~~v~~vv~dN~~-~~~TGgQ-~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a 169 (300)
T PRK11864 97 GWAGDGGTADIGFQALSGA-----AERNHDILYIMYDNEA-YMNTGIQ-RSSSTPYGAWTTTTPGGKREHKKPVPDIMAA 169 (300)
T ss_pred EEEccCccccccHHHHHHH-----HHhCcCEEEEEECCee-eecCCCC-CCCCCcCCCccccCCCCCcCCCCCHHHHHHH
Confidence 7999999843333455555 7789999999999954 4422111 1111222444555555555678999999999
Q ss_pred cCCCeEe---eCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1011 FGHDGYL---CTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1011 ~g~~~~~---~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
+|+.|+. ..++.++.++++++++. ++|++|++..+
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~-~Gps~I~~~sp 207 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEI-RGFKFIHLLAP 207 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 9999874 45678999999999986 99999999874
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=88.33 Aligned_cols=243 Identities=14% Similarity=0.028 Sum_probs=133.1
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee-------eeccccch
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI-------YGGFDEAT 247 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy-------~~g~~~~~ 247 (1065)
-|+.|+++++|+|.++|.++...+.+|++++|||+++=. -+.+..+..++-++++ |+|+++. ..|.....
T Consensus 176 tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nliv-IlddN~~~~~~~~q~~g~~~~v 254 (641)
T PLN02234 176 TGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIV-ILNDNKQVSLPTANLDGPTQPV 254 (641)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEE-EEECCCCCcccccccCCCCCCc
Confidence 588999999999999998888889999999999998754 4455566655645555 5554433 11111100
Q ss_pred h------------------hhhhhhhccCCCcccccCccHHHHHHHHHHhc-------------------CceEEEeec-
Q psy14416 248 Y------------------AWLDIIKKSNMSEDYDEELSANQVIAQALKFQ-------------------GIEYVFGIV- 289 (1065)
Q Consensus 248 ~------------------~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~-------------------GV~~vfg~p- 289 (1065)
. ........+|.......+-..-+.|.++|++. |+...=..+
T Consensus 255 ~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~ 334 (641)
T PLN02234 255 GALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADD 334 (641)
T ss_pred ccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCc
Confidence 0 11233444554332122344556677666532 111000000
Q ss_pred ------------CCc----------hhhhHHHh----hc-CCceEE-----------------------EccCCchHHHH
Q psy14416 290 ------------GIP----------VIELAMAC----QQ-EGIHYI-----------------------GMRNEQAACYA 319 (1065)
Q Consensus 290 ------------G~~----------~~~l~~al----~~-~~i~~i-----------------------~~~~E~~A~~~ 319 (1065)
|.. ...+.++| ++ +.+-.+ .-.-|++++-+
T Consensus 335 ~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~ 414 (641)
T PLN02234 335 KYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTF 414 (641)
T ss_pred ccCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHH
Confidence 000 01122222 11 122222 23468888888
Q ss_pred HHHHHHHhCCCeEEEEecccccccccccc-ccccccCcceEeecCCCccCCC-CCCCCCccChhhhhcccccEEe-eCCC
Q psy14416 320 AQAIGYLTKKPGVCLVVSGPGLLHTFGGM-ANAQINCWPMLVIGGSCAQDHE-GIGGFQECPQVELARPYCKYSA-RPPN 396 (1065)
Q Consensus 320 A~g~ar~tgkpgv~~~tsGpG~~N~~~av-~eA~~~~vPLlvItg~~p~~~~-g~ga~Q~idQ~~l~~~~~k~s~-~l~~ 396 (1065)
|.|+|...-+|.+++ ..+=+.-++--| .++...+.|++++. +++--.- +-..+|.+.+..+++.+..... ...+
T Consensus 415 AaGLA~~G~rPvv~~--fs~Fl~RA~DQI~~dva~~~lpV~~v~-~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd 491 (641)
T PLN02234 415 AAGLACEGLKPFCTI--YSSFMQRAYDQVVHDVDLQKLPVRFAI-DRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSD 491 (641)
T ss_pred HHHHHHCCCeEEEEe--hHHHHHHHHHHHHHHHhhcCCCEEEEE-eCCccCCCCCccccccHHHHHHhcCCCCEEEeeCC
Confidence 999988544554443 332222222222 23356889988775 2222111 1234677777888888877654 3456
Q ss_pred hhhHHHHHHHHHHHhhcCCCCEEEEecChhh
Q psy14416 397 IHLIGQHVEKAVRLSTFGKPGVSYLDFPANL 427 (1065)
Q Consensus 397 ~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv 427 (1065)
+.++...++.|+ ....+|++|-.|...
T Consensus 492 ~~E~~~~l~~a~----~~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 492 EAELFNMVATAA----AIDDRPSCFRYHRGN 518 (641)
T ss_pred HHHHHHHHHHHH----hCCCCCEEEEeeccc
Confidence 666655555443 334589999999653
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=88.85 Aligned_cols=241 Identities=16% Similarity=0.101 Sum_probs=137.6
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccc--cHHHHHHhhhcCCCEEEEEEcCCeeee-------------
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF--SGMELETLVRYRLPVILVIVNNNGIYG------------- 241 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m--~~~eL~t~vr~~lpivivV~NN~gy~~------------- 241 (1065)
.|..|.+++.|+|.++|.+....+++++|++|||+++= .-+.|..+..+++|+++|+-||+ |..
T Consensus 112 ~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~-~si~~~~~~~~~~l~~ 190 (581)
T PRK12315 112 VGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQ-MSIAENHGGLYKNLKE 190 (581)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCC-CcCCCCCchhhhhhhh
Confidence 35556689999999999877778899999999999875 46778888999998887777775 410
Q ss_pred ----------------cc--cc--chhhhhhhh------hc--------------cCCC--------------cc-----
Q psy14416 242 ----------------GF--DE--ATYAWLDII------KK--------------SNMS--------------ED----- 262 (1065)
Q Consensus 242 ----------------g~--~~--~~~~~~~l~------~~--------------~g~~--------------~~----- 262 (1065)
|+ .. +--|...+. .. .+.+ .+
T Consensus 191 ~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~ 270 (581)
T PRK12315 191 LRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQ 270 (581)
T ss_pred hhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCc
Confidence 00 00 000000000 00 0000 00
Q ss_pred ---cccCccHHHHHHHHHHhcCce--EEEee-cCC-chhhhHHHhh-cCCceEE-EccCCchHHHHHHHHHHHhCCCeEE
Q psy14416 263 ---YDEELSANQVIAQALKFQGIE--YVFGI-VGI-PVIELAMACQ-QEGIHYI-GMRNEQAACYAAQAIGYLTKKPGVC 333 (1065)
Q Consensus 263 ---~~~~~~~~~~l~~~L~~~GV~--~vfg~-pG~-~~~~l~~al~-~~~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~ 333 (1065)
.....+..+.+.++|.+..-+ .++.+ +.. ....+ ..+. +.+=|++ .-.-|+++.-+|.|+|..--+|.+
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~-~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv- 348 (581)
T PRK12315 271 SKVPASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGL-KEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVI- 348 (581)
T ss_pred ccCCCCCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCc-HHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEE-
Confidence 000123345555555544322 23333 111 01111 2232 2223544 557899999999999984444443
Q ss_pred EEecccccccccccc-ccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHh
Q psy14416 334 LVVSGPGLLHTFGGM-ANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLS 411 (1065)
Q Consensus 334 ~~tsGpG~~N~~~av-~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A 411 (1065)
++..+=+.-++--| .++-..+.||+++........ +-..+|.+.+..+++.+..... ...++.++...++.|++
T Consensus 349 -~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~-- 424 (581)
T PRK12315 349 -FVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALT-- 424 (581)
T ss_pred -EeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh--
Confidence 33333221222211 224567899999865333332 3345788888999999988765 45566666666655543
Q ss_pred hcCCCCEEEEecChh
Q psy14416 412 TFGKPGVSYLDFPAN 426 (1065)
Q Consensus 412 ~~~~~GPV~L~iP~D 426 (1065)
...|||+|-+|..
T Consensus 425 --~~~gP~~ir~~r~ 437 (581)
T PRK12315 425 --QHEHPVAIRVPEH 437 (581)
T ss_pred --CCCCcEEEEEcCC
Confidence 3369999999855
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00031 Score=87.68 Aligned_cols=116 Identities=15% Similarity=-0.063 Sum_probs=79.3
Q ss_pred eEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeecC-CCccCCCCCCCCCccChhhh
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG-SCAQDHEGIGGFQECPQVEL 383 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg-~~p~~~~g~ga~Q~idQ~~l 383 (1065)
|++ ...-|++++-+|.|+|+..|...++ +|..+=+.-+..++..+-..+.|++++.. +.-.--.+-..+|.+.+..+
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~ 475 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYG-GTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLAS 475 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEE-EEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHH
Confidence 444 4678999999999999977764444 55555444556677778888999998863 33332223346799999999
Q ss_pred hcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 384 ARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 384 ~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
++.+.... ++..++.++...++.|+ ....||++|-+|..
T Consensus 476 lr~iPn~~v~~PaD~~E~~~~~~~a~----~~~~gP~~irl~r~ 515 (653)
T TIGR00232 476 LRAIPNLSVWRPCDGNETAAAWKYAL----ESQDGPTALILSRQ 515 (653)
T ss_pred HhcCCCCEEEeeCCHHHHHHHHHHHH----hcCCCcEEEEEcCC
Confidence 99876653 44556555555555554 33469999999854
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=84.08 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=122.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
-+++.++++....+.|++.+.+.|+++.+++.+.+.+ -+.+++..-||.+|..||.|-+.+-.| ++..|||||+
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G~ 82 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK--SMTASSGPGI 82 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC--EEeecCCchH
Confidence 4689999999999999999999999999999887743 468899999999999999998876554 6678999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCccChhhh-------hcccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL-------ARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l-------~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
+=..-++.-|...++|++++..+|+-...|... .++|.++ .+.+-+-.....+++++-....+||+.|..-
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~--~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~ 160 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPT--RVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERF 160 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCCC--ccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998744333211 1222222 2244445667788899999999999999743
Q ss_pred CCCEEEEecCh
Q psy14416 415 KPGVSYLDFPA 425 (1065)
Q Consensus 415 ~~GPV~L~iP~ 425 (1065)
.-||.+..-.
T Consensus 161 -~~PViv~~D~ 170 (375)
T PRK09627 161 -MTPVFLLLDE 170 (375)
T ss_pred -cCceEEecch
Confidence 4678777654
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=82.55 Aligned_cols=107 Identities=15% Similarity=0.259 Sum_probs=80.0
Q ss_pred EEeccc-cccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCC-CCccHHHHH
Q psy14416 931 IVNNNG-IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLG-PSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1008 (1065)
++.||| .| ....+.+... .+.+.+|++|++||. +|+.-... ...-...|..+++.|..... +..|-..||
T Consensus 93 v~gGDG~~~-dIG~~~l~h~-----~~Rn~dit~iv~DNe-vYgnTggQ-~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la 164 (294)
T COG1013 93 VIGGDGDAY-DIGGNHLIHA-----LRRNHDITYIVVDNE-VYGNTGGQ-ASPTTPKGAKTKTTPYGKRSEKKKDPGLLA 164 (294)
T ss_pred EEecchhHh-hhhhHHHHHH-----HHcCCCeEEEEECCe-ecccCCCc-cCCCCCCCceeeecCCCCCcCCCCCHHHHH
Confidence 999999 66 7777888888 889999999999995 46632221 11222334445545544433 566899999
Q ss_pred HHcCCCeE---eeCCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1009 AVFGHDGY---LCTTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1009 ~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
.++|+.|+ .+....++...++++++. .+|++|+|..+
T Consensus 165 ~a~G~~yVAr~~~~~~~~l~~~i~kA~~~-~Gps~I~v~sP 204 (294)
T COG1013 165 MAAGATYVARASVGDPKDLTEKIKKAAEH-KGPSFIDVLSP 204 (294)
T ss_pred HHCCCCeEEEecccCHHHHHHHHHHHHhc-cCCeEEEEecC
Confidence 99999987 466788999999999988 89999999874
|
|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00038 Score=80.49 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=116.1
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
-++|.++++....+.|++.+.+.|+++..++.+.|.+ .+..++..-+|.+|..||.|-+. +|.. ++.+|||||.
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~-aG~R-a~taTSg~Gl 83 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAA-TGKR-VMTSSSSPGI 83 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHh-hCCC-EEeecCcchH
Confidence 4799999999999999999999999999999988854 35789999999999999999665 4544 5566899999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhc---c-----cccceeccCCCcccHHHHHHHHHHHhhc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA---R-----PYCKYSARPPNIHLIGQHVEKAVRLSTF 155 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~---~-----~itk~~~~v~~~~~i~~~l~~A~~~A~~ 155 (1065)
+-+..++.-|...++|++++-.+++..-.+ ..| .||.++. + ..-.-.....+++++-+....|++.|-.
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g--~t~-~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~ 160 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGLG--NIQ-PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADK 160 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCCC--CCc-chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888776633322 222 2344432 1 1223355667788888889999999875
Q ss_pred CCCccccc
Q psy14416 156 GKPGRSLL 163 (1065)
Q Consensus 156 ~rpGP~~l 163 (1065)
.+ -|+.+
T Consensus 161 ~~-~PViv 167 (352)
T PRK07119 161 YR-NPVMV 167 (352)
T ss_pred hC-CCEEE
Confidence 44 46665
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00028 Score=86.67 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=115.6
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
..|+|.++++....+.|++.+++.|+++...+.+.|.+ .++.++..-+|.+|..||.|-+. +|.. ++..|+|||
T Consensus 194 ~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~-aG~R-a~taTSg~G 271 (562)
T TIGR03710 194 ILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASY-AGAR-AMTATSGPG 271 (562)
T ss_pred EEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHh-cCCc-eeecCCCCC
Confidence 45899999999999999999999999999999998864 36999999999999999999555 5544 556799999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCcc---CCCcccchhhhcc--cccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVELAR--PYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~---~~~Q~~dq~~l~~--~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
+.=+.-+|.-|...++|++++..+++....|. ..++++.+..... .+-.-.....++.++-+.+.+|++.|-.-+
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~ 351 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQ 351 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887544332 2222222211110 111234455667777888888888886432
Q ss_pred Cccccc
Q psy14416 158 PGRSLL 163 (1065)
Q Consensus 158 pGP~~l 163 (1065)
-|+.+
T Consensus 352 -~PViv 356 (562)
T TIGR03710 352 -TPVIV 356 (562)
T ss_pred -CCEEE
Confidence 45443
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00045 Score=80.72 Aligned_cols=151 Identities=14% Similarity=0.050 Sum_probs=112.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh------CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~------~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
.-++|.++++......|++.+++.|+++..++.+.|.+ .++.++..-+|.+|..||.|-+.. |.. ++..|||
T Consensus 4 ~~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~a-GaR-a~TaTSg 81 (390)
T PRK08366 4 KVVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAA-GAR-AFTATSA 81 (390)
T ss_pred EEeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhh-CCC-eEeeeCc
Confidence 35799999999999999999999999999999988853 258888899999999999996664 533 5567999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhc-ccccc-eeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA-RPYCK-YSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~-~~itk-~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
||+.=+.-+|..|...+.|+++.-.+++... +.... .||.+++ .--+. ...-..+++++-....+|++.|-.-+
T Consensus 82 ~Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~~~~--~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~- 157 (390)
T PRK08366 82 QGLALMHEMLHWAAGARLPIVMVDVNRAMAP-PWSVW--DDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVN- 157 (390)
T ss_pred ccHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CCCCc--chhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999999999999998887766542 22221 1222221 11122 23334677788888889999886432
Q ss_pred ccccc
Q psy14416 159 GRSLL 163 (1065)
Q Consensus 159 GP~~l 163 (1065)
-|+.+
T Consensus 158 ~PViv 162 (390)
T PRK08366 158 LPAMV 162 (390)
T ss_pred CCEEE
Confidence 44444
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=89.35 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=122.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG 340 (1065)
..+++.++++....+.|++.+.+.|+++.+++.+.+.+ .++.++..-||.+|..||.|-+.+-.| ++..|||||
T Consensus 194 ~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R--a~taTSg~G 271 (562)
T TIGR03710 194 ILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR--AMTATSGPG 271 (562)
T ss_pred EEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc--eeecCCCCC
Confidence 35789999999999999999999999999999888744 369999999999999999998765444 566899999
Q ss_pred ccccccccccccccCcceEeecCCCccCCCCC---CCCCccChhhhhc---ccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 341 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVELAR---PYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 341 ~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~---ga~Q~idQ~~l~~---~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
+.=+.-++.-|...++|+|++.++|+-...+. ...+++.+. .+. .+-.-.....++.++-....+|++.|..
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~-~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~- 349 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFA-LYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEK- 349 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCccHHHHHHH-hcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999998554331 222222221 222 2223456677888999999999999974
Q ss_pred CCCEEEEecChh
Q psy14416 415 KPGVSYLDFPAN 426 (1065)
Q Consensus 415 ~~GPV~L~iP~D 426 (1065)
-.-||.+..-..
T Consensus 350 ~~~PViv~~D~~ 361 (562)
T TIGR03710 350 YQTPVIVLSDQY 361 (562)
T ss_pred hcCCEEEEechH
Confidence 346787766543
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.014 Score=76.15 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=107.7
Q ss_pred cCccHHHHHHHHHHh-------cCc---eEEEeecCCchhhhHHHhhc-------CCceEEEccCCchHHHHHHHHHHHh
Q psy14416 265 EELSANQVIAQALKF-------QGI---EYVFGIVGIPVIELAMACQQ-------EGIHYIGMRNEQAACYAAQAIGYLT 327 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~-------~GV---~~vfg~pG~~~~~l~~al~~-------~~i~~i~~~~E~~A~~~A~g~ar~t 327 (1065)
.-+++-++|++.+.+ .|+ ..+-|.||+++..+.+.|.+ ++|.+--..||..|+-+|.|-++..
T Consensus 18 ~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~ 97 (1159)
T PRK13030 18 IFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVE 97 (1159)
T ss_pred EeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccc
Confidence 457899999999999 999 99999999999999888733 3588999999999999998877433
Q ss_pred CCC-----eE--EEEeccccccccccccccccccCc----ceEeecCCCccCCCCCCCCCccChhhhhccccc-EEeeCC
Q psy14416 328 KKP-----GV--CLVVSGPGLLHTFGGMANAQINCW----PMLVIGGSCAQDHEGIGGFQECPQVELARPYCK-YSARPP 395 (1065)
Q Consensus 328 gkp-----gv--~~~tsGpG~~N~~~av~eA~~~~v----PLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k-~s~~l~ 395 (1065)
-.+ || +..-=|||+==+.=++..+-+.++ -||+++||-|..+-- |.-.|.+.+....+ -..+..
T Consensus 98 ~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SS----q~eqdSr~~~~~a~iPvl~Ps 173 (1159)
T PRK13030 98 ADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSS----SMPHQSDFALIAWHMPVLNPA 173 (1159)
T ss_pred ccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccC----cCHHHHHHHHHHcCCceeCCC
Confidence 222 22 222347776555555555555555 799999998765432 33223333333322 356778
Q ss_pred ChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 396 NIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 396 ~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++.++.+....||..+.... -||-+-.
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~-~pV~lr~ 200 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSG-AWVGFKA 200 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 88999999999999886432 3454443
|
|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00029 Score=81.48 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=122.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
-+++.++++....+.|++.+.+.|+++.+++.+.+.+ .+..++..-||.+|..||.|-+.+-.| ++..|||||+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~Gl 83 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR--VMTSSSSPGI 83 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC--EEeecCcchH
Confidence 4689999999999999999999999999999888743 357899999999999999998875544 5667899999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhc--------ccccEEeeCCChhhHHHHHHHHHHHhhc
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR--------PYCKYSARPPNIHLIGQHVEKAVRLSTF 413 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~--------~~~k~s~~l~~~~~i~~~i~~A~~~A~~ 413 (1065)
+=...++.-|...++|++++-.+|+.... +..| .||.+++- .+-.-.....+++++-.....|++.|..
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~--g~t~-~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~ 160 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGL--GNIQ-PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADK 160 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCC--CCCc-chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888874332 2222 35554431 2223456778999999999999999975
Q ss_pred CCCCEEEEecCh
Q psy14416 414 GKPGVSYLDFPA 425 (1065)
Q Consensus 414 ~~~GPV~L~iP~ 425 (1065)
.+ -||.+..-.
T Consensus 161 ~~-~PViv~~D~ 171 (352)
T PRK07119 161 YR-NPVMVLGDG 171 (352)
T ss_pred hC-CCEEEEcch
Confidence 43 588776543
|
|
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00058 Score=79.99 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=109.9
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh------CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~------~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
.-++|.++++....+.|++.+++.|+++..++.+.+.+ .+.+++.+-+|.+|..||.|-+. +|.. ++..|+|
T Consensus 5 ~~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~-aGaR-a~TaTS~ 82 (394)
T PRK08367 5 TVMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASA-AGVR-TFTATAS 82 (394)
T ss_pred EeccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHh-hCCC-eEeeecc
Confidence 34899999999999999999999999999999988854 24789999999999999999655 4533 5677999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccC---CCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCC
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG---GFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~---~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~r 157 (1065)
||+.=+.-.|.-|...++|+++..+++.... ..+ .++++- ..+..-.......++.++-+..-.|++.|-..+
T Consensus 83 ~Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i~~d~~D~~---~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~ 158 (394)
T PRK08367 83 QGLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINIWNDWQDTI---SQRDTGWMQFYAENNQEALDLILIAFKVAEDER 158 (394)
T ss_pred chHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCcCcchHHHH---hccccCeEEEeCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987766543 211 223321 111111222233677778888888999887433
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=91.22 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=66.9
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.+ ...+.++.+ +-...++||-.|+|+|||++ + +. +.+. ....-+..+..++
T Consensus 142 ~~~GDG~l--~eG~~~EAl--~~A~~~~L~nli~i~d~N~~-~-i~----------~~~~-------~~~~~~~~~~f~a 198 (654)
T PLN02790 142 CILGDGCQ--MEGISNEAA--SLAGHWGLGKLIVLYDDNHI-S-ID----------GDTE-------IAFTEDVDKRYEA 198 (654)
T ss_pred EEECcCcc--cchHHHHHH--HHHHHhCCCCEEEEEecCCc-c-cc----------CCcc-------cccchhHHHHHHH
Confidence 99999999 444433322 11256799877777788883 1 00 1100 1112356788999
Q ss_pred cCCCeEee----CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1011 FGHDGYLC----TTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1011 ~g~~~~~~----~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
||.+++.| ++.++|.+|++++.+..++|++|++.|-....
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG~G 242 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIGYG 242 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEeecCC
Confidence 99999999 67999999999988634899999999965443
|
|
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.035 Score=72.41 Aligned_cols=154 Identities=18% Similarity=0.080 Sum_probs=104.2
Q ss_pred cCccHHHHHHHHHHh-------cCc---eEEEeecCCchhhhHHHhhc-------CCceEEEccCCchHHHHHHHHHH--
Q psy14416 265 EELSANQVIAQALKF-------QGI---EYVFGIVGIPVIELAMACQQ-------EGIHYIGMRNEQAACYAAQAIGY-- 325 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~-------~GV---~~vfg~pG~~~~~l~~al~~-------~~i~~i~~~~E~~A~~~A~g~ar-- 325 (1065)
.-+++-++|++.+.+ .|+ ..+-|.||+++..+.+.|.+ ++|.+--..||-.|+-++.|--+
T Consensus 26 ~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~ 105 (1165)
T PRK09193 26 VFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVN 105 (1165)
T ss_pred eeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccc
Confidence 357899999999888 999 99999999999999888732 45999999999999988855422
Q ss_pred ------HhCCCeEEEEeccccccccccccccccccCc----ceEeecCCCccCCCCCCCCCccChhhhhccccc-EEeeC
Q psy14416 326 ------LTKKPGVCLVVSGPGLLHTFGGMANAQINCW----PMLVIGGSCAQDHEGIGGFQECPQVELARPYCK-YSARP 394 (1065)
Q Consensus 326 ------~tgkpgv~~~tsGpG~~N~~~av~eA~~~~v----PLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k-~s~~l 394 (1065)
..|.-++ ..-=|||+==+.=++..|-+.++ -||+++||-|..+-- |.-.|.+.+....+ -..+.
T Consensus 106 ~~~~a~~~Gv~~l-~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SS----q~eqdSr~~~~~a~iPvl~P 180 (1165)
T PRK09193 106 LFPGAKYDGVFGM-WYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSS----TLPHQSEHAFKAAGMPVLFP 180 (1165)
T ss_pred cccceeeccceEE-EecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccc----cchhhhHHHHHHcCCceeCC
Confidence 2333222 23347776544445554444444 799999998765433 32223333332222 35567
Q ss_pred CChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 395 PNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 395 ~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
.++.++.+....||..+.... -||-+-+=
T Consensus 181 s~~qE~~d~~~~g~~lSr~~g-~pV~lr~~ 209 (1165)
T PRK09193 181 ANVQEILDYGLHGWAMSRYSG-LWVGMKTV 209 (1165)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCEEEEEE
Confidence 788889999999999886432 45555443
|
|
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=79.65 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=54.4
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCc-cccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF-GFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf-~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.+.||.+.+.|.|.+.+.....++++||++.|||++ ....+.|..+++.+.++++||+||+.|
T Consensus 68 ~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y 131 (299)
T PRK11865 68 HVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAY 131 (299)
T ss_pred hhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccc
Confidence 467888899999998886554567899999999986 444899999999999999999999988
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=89.77 Aligned_cols=107 Identities=10% Similarity=0.110 Sum_probs=66.8
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||++ ...+.+..+.. ....++|+++|+-|| + |..-... +............+..+..+.+++
T Consensus 140 ~~iGDG~~--~eG~~~EAln~--A~~~k~~li~Ii~dN-~-~si~~~~--------~~~~~~l~~~~~~~~~~~~~~~~a 205 (581)
T PRK12315 140 AVIGDGSL--SGGLALEGLNN--AAELKSNLIIIVNDN-Q-MSIAENH--------GGLYKNLKELRDTNGQSENNLFKA 205 (581)
T ss_pred EEECchhh--hcchHHHHHHH--HHhhCCCEEEEEECC-C-CcCCCCC--------chhhhhhhhhhhcccccHHHHHHh
Confidence 99999999 44443333311 144568988777666 4 2211000 000000000011123466788999
Q ss_pred cCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1011 FGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1011 ~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
||.+++.| .+.+++.++++++.+. ++|++|++.|-+....+
T Consensus 206 ~G~~~~~v~DG~D~~~l~~a~~~a~~~-~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 206 MGLDYRYVEDGNDIESLIEAFKEVKDI-DHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred cCCeEEEeeCCCCHHHHHHHHHHHHhC-CCCEEEEEEeecCCCCC
Confidence 99999998 4789999999998764 89999999998776643
|
|
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0007 Score=79.85 Aligned_cols=152 Identities=15% Similarity=0.033 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC------CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCC
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE------GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSG 80 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~------~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~G 80 (1065)
.-|+|.++++....+.|++.+++.|+++..++.+.+.+. +..++..-+|.+|..||.|-+. +|.. ++..|+|
T Consensus 11 ~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~-aGaR-a~TaTS~ 88 (407)
T PRK09622 11 EVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAA-AGGR-VATATSS 88 (407)
T ss_pred eecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHh-hCcC-EEeecCc
Confidence 358999999999999999999999999999999888532 3678999999999999999554 5644 5567999
Q ss_pred cchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhc--ccccceeccCCCcccHHHHHHHHHHHhhcCC-
Q psy14416 81 PGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA--RPYCKYSARPPNIHLIGQHVEKAVRLSTFGK- 157 (1065)
Q Consensus 81 PG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~--~~itk~~~~v~~~~~i~~~l~~A~~~A~~~r- 157 (1065)
||+.=+.-+|.-|...++|++++..++.... ... -..||.++. +.-..-.....++.++-+.+.+|++.|-..+
T Consensus 89 ~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~~~--i~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~ 165 (407)
T PRK09622 89 QGLALMVEVLYQASGMRLPIVLNLVNRALAA-PLN--VNGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKV 165 (407)
T ss_pred chHHHHhhHHHHHHHhhCCEEEEEeccccCC-CcC--CCchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999888876665432 111 111332222 2111234555677778888888999885431
Q ss_pred Cccccc
Q psy14416 158 PGRSLL 163 (1065)
Q Consensus 158 pGP~~l 163 (1065)
.-|+.+
T Consensus 166 ~~Pviv 171 (407)
T PRK09622 166 RLPVIV 171 (407)
T ss_pred CCCEEE
Confidence 355554
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00015 Score=90.29 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=83.4
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEecccccc-Ccc
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG-GFD 942 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~-~~~ 942 (1065)
.+++|+++|+|+ ++++.. +++.|+ +|+|||+|. ++.
T Consensus 122 ~gslg~a~G~A~--a~~~~~--------~~~~v~---------------------------------~v~GDG~~~eG~~ 158 (641)
T PRK12571 122 STSISAALGFAK--ARALGQ--------PDGDVV---------------------------------AVIGDGSLTAGMA 158 (641)
T ss_pred cChHHHHHHHHH--HHHHhC--------CCCeEE---------------------------------EEEeCchhhcchH
Confidence 345577777777 777765 778899 999999993 333
Q ss_pred hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh---hH-hHHhhcCCc-------ccCCCCCCCCCCcc--------
Q psy14416 943 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA---TY-ASIVESGEV-------TTVSPPTSLGPSLR-------- 1003 (1065)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~---~~-~~~~~~~~~-------~~~~~~~~~~~~~~-------- 1003 (1065)
..++.++ .++++|+++ |+|||++.-.-+.. .+ ..+.....+ +... ...+..+.
T Consensus 159 ~Eal~~a-----~~~~~~li~-I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 230 (641)
T PRK12571 159 YEALNNA-----GAADRRLIV-ILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVE--ERLPGPLRDGARRARE 230 (641)
T ss_pred HHHHHHH-----HHhCCCEEE-EEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHH--hhcchhHHHHHHHHHH
Confidence 4566666 778899866 66776732111110 00 011001000 0000 00001111
Q ss_pred -------HHHHHHHcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1004 -------YEKMMAVFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1004 -------~~~~~~~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
....-++||.++. .|. +.++|.++|+++.+..++|++|.+.|......
T Consensus 231 ~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~~~T~kGkG~ 288 (641)
T PRK12571 231 LVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVHVVTEKGRGY 288 (641)
T ss_pred hhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEEEEecCccCc
Confidence 1356688999998 465 89999999998876348999999999776654
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00041 Score=75.43 Aligned_cols=146 Identities=17% Similarity=0.058 Sum_probs=100.3
Q ss_pred HHHhcCceEEEeecCCchhhhHHHhhc----CCc--eEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc
Q psy14416 276 ALKFQGIEYVFGIVGIPVIELAMACQQ----EGI--HYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 349 (1065)
Q Consensus 276 ~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i--~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~ 349 (1065)
..++.|++.+++.|+++.+++.+.+.+ .+. +++..-+|.+|..|+.|-+. +|+ .++..|||||+.=...++.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~-aG~-ra~t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASA-AGA-RAMTATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHH-TT---EEEEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHh-cCC-ceEEeecCCcccccHhHHH
Confidence 456789999999999999998887632 345 99999999999999988776 444 3456899999999999999
Q ss_pred cccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 350 NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 350 eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
-|...++|+++...+|+....|....++=+-.-..+..-.-.....++.++......|++.|..- .-||.+..-
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~-~~PViv~~D 153 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKY-QTPVIVLFD 153 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHH-TSEEEEEEE
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 99999999999999988765543332221112223344444566788899999999999999753 468887764
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0034 Score=75.27 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=76.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-----CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-----GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-----~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
.+.+-+++++.+-+.||..+-|.||+....|.+.|.+. ++.+=...||..|.-+|.| |...|.-+++..- .||
T Consensus 15 ~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~G-A~~~G~ral~~mK-hVG 92 (640)
T COG4231 15 LLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAG-ASYAGVRALVTMK-HVG 92 (640)
T ss_pred HhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHH-hhhcCceeeEEec-ccc
Confidence 35778999999999999999999999999999999643 3777888999999999999 7778888887773 666
Q ss_pred h---hhhhHHHhhcccCCCcEEEEecCCCCCc
Q psy14416 83 L---LHTFGGMANAQINCWPMLVIGGSCAQDH 111 (1065)
Q Consensus 83 ~---~N~l~gla~A~~~~~Pll~Isg~~~~~~ 111 (1065)
. ++.+-.++.+=. .=-+|+|+|+-|.-.
T Consensus 93 lNvAsDpl~s~ay~Gv-~GGlviv~aDDpg~~ 123 (640)
T COG4231 93 LNVASDPLMSLAYAGV-TGGLVIVVADDPGMH 123 (640)
T ss_pred cccchhhhhhhhhcCc-cccEEEEEccCCCcc
Confidence 3 333333333222 335788888766543
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00081 Score=77.85 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=60.8
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
||-|+.|+... ...++ +..+.+|.++|.|+|++++.+....++.++|+.|||+..-. -..|..+..+++|+++||
T Consensus 119 GrggsmH~~~~-~~~~~--~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvv 195 (362)
T PLN02269 119 GKGGSMHFYKK-DANFY--GGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVC 195 (362)
T ss_pred CCCCcccccch-hcCcc--ccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEE
Confidence 67777777331 12232 23578999999999999998888888999999999995433 455667788999988888
Q ss_pred EcCCee
Q psy14416 234 VNNNGI 239 (1065)
Q Consensus 234 ~NN~gy 239 (1065)
-||+ |
T Consensus 196 eNN~-~ 200 (362)
T PLN02269 196 ENNH-Y 200 (362)
T ss_pred eCCC-E
Confidence 8886 6
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00058 Score=74.26 Aligned_cols=143 Identities=17% Similarity=0.075 Sum_probs=96.7
Q ss_pred HHHhCCCcEEEEeCCCChHHHHHHHHh----CCC--eEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHh
Q psy14416 18 ALKFQGIEYVFGIVGIPVIELAMACQQ----EGI--HYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA 91 (1065)
Q Consensus 18 ~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i--~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla 91 (1065)
...+.|++.+++.|++....+.+.+.+ .++ +++..-+|.+|..||.|-+. +|+... ..|+|||+.-+.-+|.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~-aG~ra~-t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASA-AGARAM-TATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHH-TT--EE-EEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHh-cCCceE-EeecCCcccccHhHHH
Confidence 356789999999999999998888743 344 99999999999999999555 675555 5699999999999999
Q ss_pred hcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 92 NAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 92 ~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
.|...++|++++..++.....|....++-+..-..+..-.-.....++.++.+....|++.|-.-+ -|+.+
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~-~PViv 150 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQ-TPVIV 150 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHC-CCEEE
Confidence 999999999999988776665544444444333444334445566777888888889999887643 45443
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00066 Score=79.36 Aligned_cols=152 Identities=14% Similarity=0.028 Sum_probs=117.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc------CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~------~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
-+++.++++...+..|++.+.+.|+++.+++.+.+.+ -++.++..-+|.+|.-||.|-+.+-.| ++..||||
T Consensus 5 ~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR--a~TaTSg~ 82 (390)
T PRK08366 5 VVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR--AFTATSAQ 82 (390)
T ss_pred EeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeCcc
Confidence 4689999999999999999999999999999887743 258888888999999999998876554 56689999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhh-hcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCC
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL-ARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l-~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~G 417 (1065)
|+.=+.-++.-|...++|+|+.-.+|+... +. . -..||.++ +...+.|. .-..+++++.....+|++.|..- .-
T Consensus 83 Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~-~-~~~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~-~~ 158 (390)
T PRK08366 83 GLALMHEMLHWAAGARLPIVMVDVNRAMAP-PW-S-VWDDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETV-NL 158 (390)
T ss_pred cHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CC-C-CcchhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHH-CC
Confidence 999999999999999999999988887652 11 1 11244442 22333442 23468888999999999999743 35
Q ss_pred EEEEec
Q psy14416 418 VSYLDF 423 (1065)
Q Consensus 418 PV~L~i 423 (1065)
||.+..
T Consensus 159 PViv~~ 164 (390)
T PRK08366 159 PAMVVE 164 (390)
T ss_pred CEEEEe
Confidence 776665
|
|
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00039 Score=67.59 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=112.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEE-EccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
.+++.++++.++|++.||++.+.+|=+....++.-++++ .|..| .+|.|.+-+ .+.|.+.+.+||..++-.|| +.
T Consensus 2 ~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~G-IcAGa~lAGkk~ailmQnsG--lG 78 (172)
T COG4032 2 YKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVG-ICAGAYLAGKKPAILMQNSG--LG 78 (172)
T ss_pred cccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhccee-eehhhhhcCCCcEEEEeccC--cc
Confidence 467899999999999999999999999888888777654 56666 455555555 45577778888988887766 56
Q ss_pred ccccccccccc-cCcceEeecCCCccCCCCCCCCCcc--ChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEE
Q psy14416 343 HTFGGMANAQI-NCWPMLVIGGSCAQDHEGIGGFQEC--PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVS 419 (1065)
Q Consensus 343 N~~~av~eA~~-~~vPLlvItg~~p~~~~g~ga~Q~i--dQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV 419 (1065)
|.+++++.-+. -++|++.|...|.....+..+.--+ -..++++..---.+.+..|++....+..|+..+.... .||
T Consensus 79 NsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s-~pv 157 (172)
T COG4032 79 NSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS-RPV 157 (172)
T ss_pred hHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC-Cce
Confidence 77777766544 3799999998887766554431111 0123333333346778899999999999999887432 456
Q ss_pred EEecChhhh
Q psy14416 420 YLDFPANLL 428 (1065)
Q Consensus 420 ~L~iP~Dv~ 428 (1065)
-+-+-...+
T Consensus 158 ~vlls~~~W 166 (172)
T COG4032 158 AVLLSPKYW 166 (172)
T ss_pred EEEechHHh
Confidence 666554443
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00069 Score=76.00 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=74.3
Q ss_pred ccCCCcchhHHHHHHhhhcccC-CCCeEEEEeCCCCc-cccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAF-GFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDII 254 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~-p~rrvV~l~GDGsf-~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~ 254 (1065)
..+||.+.+.|.|++.+..... ++..|+++.|||++ ....+.|..++..++|+++||.||..| ++.- .|.-.
T Consensus 68 ~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~--~~TG----gQ~S~ 141 (300)
T PRK11864 68 HTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAY--MNTG----IQRSS 141 (300)
T ss_pred eehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeee--ecCC----CCCCC
Confidence 4678999999999999854332 44667779999996 556899999999999999999999977 3311 11111
Q ss_pred -hccCCCccc--ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHh
Q psy14416 255 -KKSNMSEDY--DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC 300 (1065)
Q Consensus 255 -~~~g~~~~~--~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al 300 (1065)
.+.+...+. .-+....--+.+.++.+|+.+|.-+.-.....+..++
T Consensus 142 ~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i 190 (300)
T PRK11864 142 STPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKL 190 (300)
T ss_pred CCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHH
Confidence 111100000 0000011235566667899998776544445555444
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00035 Score=87.30 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=65.7
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.+ .-.+.++.+ +-...++||-.|+|+|||++ + ++ +.+ .....-+..+..++
T Consensus 153 ~v~GDG~l--~eG~~~EAl--~~A~~~~L~nLi~i~d~N~~-~-i~----------~~~-------~~~~~~~~~~~f~a 209 (661)
T PTZ00089 153 VICGDGCL--QEGVSQEAL--SLAGHLGLEKLIVLYDDNKI-T-ID----------GNT-------DLSFTEDVEKKYEA 209 (661)
T ss_pred EEECccch--hhHHHHHHH--HHHHHhCCCCEEEEEECCCc-c-cc----------cCc-------ccccCccHHHHHHh
Confidence 99999999 444433322 11255788877777888883 1 11 111 11123467889999
Q ss_pred cCCCeEee---C-CHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1011 FGHDGYLC---T-TVPQIKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1011 ~g~~~~~~---~-~~~~l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
||.++..| + +.++|.+|++++.+..++|++|++.|-+
T Consensus 210 ~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T~k 250 (661)
T PTZ00089 210 YGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTI 250 (661)
T ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEEeee
Confidence 99999999 3 8999999999987654799999999964
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00047 Score=86.04 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=65.5
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.. .-...++.+ +-...++||-.|+|++||++ + ++ +.. .....-+..+..++
T Consensus 147 ~~~GDG~l--~EG~~~EA~--~~A~~~~L~nLi~ivd~N~~-~-i~----------~~~-------~~~~~~~~~~~~~a 203 (653)
T TIGR00232 147 VFVGDGCL--QEGISYEVA--SLAGHLKLGKLIVLYDSNRI-S-ID----------GAV-------DGSFTEDVAKRFEA 203 (653)
T ss_pred EEEccccc--cccHHHHHH--HHHHHhCCCcEEEEEeCCCe-e-ec----------ccc-------ccccCccHHHHHHh
Confidence 99999998 222222111 11256899977777888773 1 01 111 11113478899999
Q ss_pred cCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1011 FGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1011 ~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
||.+...| ++.+++.+|++++.+..++|++|++.|-+...
T Consensus 204 ~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~g~G 246 (653)
T TIGR00232 204 YGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTTIGFG 246 (653)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeeccc
Confidence 99999998 46889999999887653589999999965443
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0008 Score=76.80 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=79.7
Q ss_pred EEeccc-cccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 931 IVNNNG-IYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 931 ~~~gd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++.||| +| ....+.+.-+ .+.+.+|++|++||.. |+.-... ...-...|..+++.|.....+..|...+|.
T Consensus 156 v~gGDG~~y-dIG~~~l~ha-----~~r~~ni~~iv~DNe~-Y~nTGgQ-~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~ 227 (365)
T cd03377 156 IIGGDGWAY-DIGYGGLDHV-----LASGENVNILVLDTEV-YSNTGGQ-ASKATPLGAVAKFAAAGKRTGKKDLGMIAM 227 (365)
T ss_pred EEecchhhh-ccchhhHHHH-----HHcCCCeEEEEECCcc-cccCCCc-CCCCCCCcCcCccCCCCCCCCCcCHHHHHH
Confidence 999998 55 7777788766 6678889999999954 5532211 111223355566666666667799999999
Q ss_pred HcCCCeEe---e-CCHHHHHHHHHHHHhcCCCCEEEEEEeC
Q psy14416 1010 VFGHDGYL---C-TTVPQIKQAMKKCLQTTTRPSLINILIN 1046 (1065)
Q Consensus 1010 ~~g~~~~~---~-~~~~~l~~~~~~~~~~~~~~~li~~~~~ 1046 (1065)
++|..|+- + .+..++.++++++++. ++|++|+|..+
T Consensus 228 a~g~~YVA~~s~~~~~~~~~~~i~eA~~~-~Gps~I~v~sP 267 (365)
T cd03377 228 SYGNVYVAQIALGANDNQTLKAFREAEAY-DGPSLIIAYSP 267 (365)
T ss_pred HcCCCEEEEEecccCHHHHHHHHHHHhcC-CCCEEEEEEcc
Confidence 99999874 3 2668999999999987 99999999885
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=75.14 Aligned_cols=154 Identities=14% Similarity=0.013 Sum_probs=115.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc------CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~------~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
-+++-++++...++.|++.+++.|+++.+++.+.+.+ -+.+++..-+|.+|..||.|-+.+-.| ++..||||
T Consensus 6 ~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR--a~TaTS~~ 83 (394)
T PRK08367 6 VMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR--TFTATASQ 83 (394)
T ss_pred eccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeccc
Confidence 4689999999999999999999999999999888743 257889999999999999887765444 56689999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhh--cccccEEeeCCChhhHHHHHHHHHHHhhcCC-C
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA--RPYCKYSARPPNIHLIGQHVEKAVRLSTFGK-P 416 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~--~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~-~ 416 (1065)
|+.=....+.-|...++|+++..+.|.... .... ..||.++. +..-....-..++.++......|++.|...+ .
T Consensus 84 Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i--~~d~~D~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~ 160 (394)
T PRK08367 84 GLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINI--WNDWQDTISQRDTGWMQFYAENNQEALDLILIAFKVAEDERVL 160 (394)
T ss_pred hHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCc--CcchHHHHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999988876553 1110 01333221 2211122233677888889999999997433 2
Q ss_pred CEEEEecC
Q psy14416 417 GVSYLDFP 424 (1065)
Q Consensus 417 GPV~L~iP 424 (1065)
-||.+..-
T Consensus 161 ~Pviv~~D 168 (394)
T PRK08367 161 LPAMVGFD 168 (394)
T ss_pred CCEEEEec
Confidence 46766654
|
|
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=78.16 Aligned_cols=155 Identities=13% Similarity=-0.003 Sum_probs=118.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc---C---CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ---E---GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~---~---~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
-+++.++++....+.|++.+++.|+++.+++.+.+.+ + +..++..-+|.+|..||.|-+..-.| ++..||||
T Consensus 12 ~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR--a~TaTS~~ 89 (407)
T PRK09622 12 VWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR--VATATSSQ 89 (407)
T ss_pred ecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC--EEeecCcc
Confidence 4789999999999999999999999999999888743 2 36788899999999999887764433 56689999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhc-ccccE-EeeCCChhhHHHHHHHHHHHhhcC-CC
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR-PYCKY-SARPPNIHLIGQHVEKAVRLSTFG-KP 416 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~-~~~k~-s~~l~~~~~i~~~i~~A~~~A~~~-~~ 416 (1065)
|+.=...++.-|...++|+|+...+|.... . ..-..||.+++. ..+.| .....++.++-+...+|++.|... -.
T Consensus 90 Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~--~~i~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~ 166 (407)
T PRK09622 90 GLALMVEVLYQASGMRLPIVLNLVNRALAA-P--LNVNGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVR 166 (407)
T ss_pred hHHHHhhHHHHHHHhhCCEEEEEeccccCC-C--cCCCchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999988887432 1 111124433322 22333 455678889999999999999643 24
Q ss_pred CEEEEecCh
Q psy14416 417 GVSYLDFPA 425 (1065)
Q Consensus 417 GPV~L~iP~ 425 (1065)
-||.+..--
T Consensus 167 ~Pviv~~Dg 175 (407)
T PRK09622 167 LPVIVNQDG 175 (407)
T ss_pred CCEEEEech
Confidence 678776543
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00049 Score=85.52 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=66.9
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.+ .-....+.+ +-..+++||-.|+|++||++ . ++ +. +.....-|..+..++
T Consensus 151 ~~~GDGel--~EG~~~EA~--~~A~~~kL~nLi~ivD~N~~-~-id----------g~-------~~~~~~~~~~~r~~a 207 (663)
T PRK12754 151 AFMGDGCM--MEGISHEVC--SLAGTLKLGKLIAFYDDNGI-S-ID----------GH-------VEGWFTDDTAMRFEA 207 (663)
T ss_pred EEECcchh--hchHHHHHH--HHHHHhCCCCEEEEEEcCCC-c-cC----------cc-------hhhccCccHHHHHHh
Confidence 99999999 332222211 11266899977777777774 1 11 11 111123578999999
Q ss_pred cCCCeEe-eC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1011 FGHDGYL-CT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1011 ~g~~~~~-~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
||.+... |. +.+++.+|++++....++|++|++.|-.....
T Consensus 208 ~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~g~G~ 251 (663)
T PRK12754 208 YGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTIIGFGS 251 (663)
T ss_pred cCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccCc
Confidence 9999988 54 78999999998876458999999999765443
|
|
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00038 Score=79.61 Aligned_cols=119 Identities=24% Similarity=0.261 Sum_probs=80.1
Q ss_pred ccCCCcchhHHHHHHhhhccc-----C-----CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHY-----A-----PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~-----~-----p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
-|++|+|++.|+|.++|.+.. + -+.+|+|++|||.+|=. -+.+..+..++|+-+++|+++++. .++
T Consensus 110 tGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~--q~d 187 (332)
T PF00456_consen 110 TGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGI--QID 187 (332)
T ss_dssp -SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESE--ETT
T ss_pred ccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCc--ccC
Confidence 589999999999999986532 1 25799999999998765 566778999999988888877633 111
Q ss_pred cchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHH
Q psy14416 245 EATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324 (1065)
Q Consensus 245 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~a 324 (1065)
- .. .....+-+.+.++..|-+.+-.+-|.....+..|+ -.+
T Consensus 188 g------------~~------~~~~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~---------------------~~a 228 (332)
T PF00456_consen 188 G------------PT------DIVFSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAI---------------------EEA 228 (332)
T ss_dssp E------------EG------GGTHHSHHHHHHHHTT-EEEEEEETTBHHHHHHHH---------------------HHH
T ss_pred C------------Cc------ccccchHHHHHHHHhhhhhcccccCcHHHHHHHHH---------------------HHH
Confidence 0 00 11223446888899998877766787776665443 344
Q ss_pred HH-hCCCeEEEEe
Q psy14416 325 YL-TKKPGVCLVV 336 (1065)
Q Consensus 325 r~-tgkpgv~~~t 336 (1065)
+. ++||.++++.
T Consensus 229 ~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 229 KASKGKPTVIIAR 241 (332)
T ss_dssp HHSTSS-EEEEEE
T ss_pred HhcCCCCceeecc
Confidence 54 4999999986
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00048 Score=86.00 Aligned_cols=98 Identities=18% Similarity=0.129 Sum_probs=66.1
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||.+ .-.+.++.+ +-..+++||-.|+|+|||++ + ++ +... ....-|..+..++
T Consensus 151 ~~~GDGel--~EG~~~EA~--~~A~~~kL~nLi~ivd~N~~-~-i~----------~~~~-------~~~~~~~~~~f~a 207 (663)
T PRK12753 151 VFMGDGCL--MEGISHEVC--SLAGTLGLGKLIGFYDHNGI-S-ID----------GETE-------GWFTDDTAKRFEA 207 (663)
T ss_pred EEECcCcc--ccHHHHHHH--HHHHHHCCCCEEEEEECCCC-c-CC----------CChh-------hhcChhHHHHHHH
Confidence 99999999 333322222 11266899866777777773 1 11 1111 1112467889999
Q ss_pred cCCCeEe-eC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1011 FGHDGYL-CT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1011 ~g~~~~~-~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
||.++.. |. +.++|.+|++++.+..++|++|++.|-.....
T Consensus 208 ~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~~T~kG~G~ 251 (663)
T PRK12753 208 YHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTIIGFGS 251 (663)
T ss_pred cCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeecCCC
Confidence 9999984 64 78899999998876558999999999765443
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=81.29 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=80.3
Q ss_pred cccCCCcchhHHHHHHhhhccc-----CC-----CCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY-----AP-----GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~-----~p-----~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|++|.+++.|+|.++|.+.. .+ +++|+|++|||+++=. -+.+..+..++||.+++|+||++| ..
T Consensus 103 ~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~--~i 180 (654)
T PLN02790 103 TTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHI--SI 180 (654)
T ss_pred cCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCc--cc
Confidence 3688999999999999997632 22 6899999999998754 667778899999988888888866 22
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecC-CchhhhHHHhhcCCceEEEccCCchHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVG-IPVIELAMACQQEGIHYIGMRNEQAACYAAQA 322 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG-~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g 322 (1065)
+.+.- ....+-+.+..+..|.+++-..-| .....+ ..|.-
T Consensus 181 ~~~~~------------------~~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l---------------------~~a~~ 221 (654)
T PLN02790 181 DGDTE------------------IAFTEDVDKRYEALGWHTIWVKNGNTDYDEI---------------------RAAIK 221 (654)
T ss_pred cCCcc------------------cccchhHHHHHHHcCCeEEEECCCCCCHHHH---------------------HHHHH
Confidence 21000 001234566777777777653333 233333 33444
Q ss_pred HHHH-hCCCeEEEEe
Q psy14416 323 IGYL-TKKPGVCLVV 336 (1065)
Q Consensus 323 ~ar~-tgkpgv~~~t 336 (1065)
.++. +++|.++.+.
T Consensus 222 ~a~~~~~~P~lI~~~ 236 (654)
T PLN02790 222 EAKAVTDKPTLIKVT 236 (654)
T ss_pred HHHhcCCCeEEEEEE
Confidence 5554 6889988875
|
|
| >COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00063 Score=67.47 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=56.3
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCc--cccc-HHHHhhh-----------
Q psy14416 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP--NCVS-AARTHAL----------- 556 (1065)
Q Consensus 491 ~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hp--l~lg-~~~~~al----------- 556 (1065)
-++.++++||||++|+|..+.+.+..+.+.+|+|+.++|+++|..+.+.+-+..- -+.+ ......+
T Consensus 27 v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~ 106 (170)
T COG1880 27 VVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGN 106 (170)
T ss_pred HHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCC
Confidence 3567899999999999999887888899999999999999999876543221100 0001 1111111
Q ss_pred cCCCEEEEeCCccc
Q psy14416 557 QNADLVLLLGARLN 570 (1065)
Q Consensus 557 ~~aDlVI~iG~~~~ 570 (1065)
.+.|+||.+|+..-
T Consensus 107 g~yDlviflG~~~y 120 (170)
T COG1880 107 GNYDLVIFLGSIYY 120 (170)
T ss_pred CCcceEEEEeccHH
Confidence 36899999998753
|
|
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0075 Score=72.12 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=63.7
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEec--cccccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhccc
Q psy14416 310 MRNEQAACYAAQAIGYLTKKPGVCLVVS--GPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPY 387 (1065)
Q Consensus 310 ~~~E~~A~~~A~g~ar~tgkpgv~~~ts--GpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~ 387 (1065)
..-|+.|.-+|.|+|..--||.|++-.. =-|-=++ +++--.++.||++..-+...--.+-..+|-+-...+++++
T Consensus 364 GIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQRAYDQl---iHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~i 440 (627)
T COG1154 364 GIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQRAYDQL---IHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCI 440 (627)
T ss_pred hhhHHHHHHHHHHHHhCCCCCEEEEecHHHHHHHHHH---HHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcC
Confidence 4457778888888887777777765421 0011111 2333456888887654333222222334554346788888
Q ss_pred ccEEeeC-CChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 388 CKYSARP-PNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 388 ~k~s~~l-~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
.....-. ++.+++.+.+..|+. ..-||+-|-.|..
T Consensus 441 Pnmvi~aP~de~el~~ml~ta~~----~~~gP~AiRyPrg 476 (627)
T COG1154 441 PNMVIMAPRDEEELRQMLYTALA----QDDGPVAIRYPRG 476 (627)
T ss_pred CCcEEecCCCHHHHHHHHHHHHh----cCCCCeEEEecCC
Confidence 8776654 344555555555543 4458999999955
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0021 Score=80.08 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=84.4
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|++|.|++.|+|.++|.+... -+.+++|++|||+++=. -+.+..+..++||.+++|++|++| .+
T Consensus 112 stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~--~i 189 (663)
T PRK12754 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI--SI 189 (663)
T ss_pred cCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC--cc
Confidence 36899999999999999976543 26899999999998754 566778899999987777777755 22
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+- .. . ... .+-+.+.++..|.+.+-.+-|.....+.+|+ .-
T Consensus 190 dg------------~~-~----~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~---------------------~~ 230 (663)
T PRK12754 190 DG------------HV-E----GWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAV---------------------EE 230 (663)
T ss_pred Cc------------ch-h----hcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHH---------------------HH
Confidence 11 00 0 011 2457888888998887656777655554332 23
Q ss_pred HHH-hCCCeEEEEe
Q psy14416 324 GYL-TKKPGVCLVV 336 (1065)
Q Consensus 324 ar~-tgkpgv~~~t 336 (1065)
++. +++|.++++.
T Consensus 231 a~~~~~~Pt~I~~~ 244 (663)
T PRK12754 231 ARAVTDKPSLLMCK 244 (663)
T ss_pred HHhcCCCCEEEEEE
Confidence 333 5889998885
|
|
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0031 Score=72.67 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=51.0
Q ss_pred cccCCCcchhHHHHHHhhhcc-------cCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~-------~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.-|++|.|++.|+|.+++... ...+.+|+|++|||.++=. -+.+..+..++|+-+++|+|+++.
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~ 188 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQ 188 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 358999999999999998764 2357899999999998764 455667889999877777777644
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.97 Score=59.50 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=101.9
Q ss_pred cCccHHHHHHHHH-------HhcCce---EEEeecCCchhhhHHHhh-------cCCceEEEccCCchHHHHHHHHHHHh
Q psy14416 265 EELSANQVIAQAL-------KFQGIE---YVFGIVGIPVIELAMACQ-------QEGIHYIGMRNEQAACYAAQAIGYLT 327 (1065)
Q Consensus 265 ~~~~~~~~l~~~L-------~~~GV~---~vfg~pG~~~~~l~~al~-------~~~i~~i~~~~E~~A~~~A~g~ar~t 327 (1065)
.-+++-++|++.+ .+.|++ .+-|.||+++..+.+.|. +++|.+-...||-.|+-|..|--++-
T Consensus 29 ~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e 108 (1186)
T PRK13029 29 IYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLE 108 (1186)
T ss_pred EeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhcc
Confidence 3578999999999 999999 999999999999988873 23599999999999988777755422
Q ss_pred CCC-----eE--EEEecccccccccccccccc--cc--CcceEeecCCCccCCCCCCCCCccChhhhhccccc-EEeeCC
Q psy14416 328 KKP-----GV--CLVVSGPGLLHTFGGMANAQ--IN--CWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK-YSARPP 395 (1065)
Q Consensus 328 gkp-----gv--~~~tsGpG~~N~~~av~eA~--~~--~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k-~s~~l~ 395 (1065)
-.+ || +...=|||+==+.=++..+- .. +=-||+++||-|..+-- |.-.|.+.+....+ -..+..
T Consensus 109 ~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SS----q~eqdSr~~~~~a~iPvl~Ps 184 (1186)
T PRK13029 109 LDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSS----SVAHQSDHTFIAWGIPVLYPA 184 (1186)
T ss_pred cccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccc----cCHHHHHHHHHHcCCceeCCC
Confidence 111 11 22234676433333332221 11 23589999987765432 33333333333322 355677
Q ss_pred ChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 396 NIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 396 ~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
++.++.+....||..+.... -||-+-.=.+
T Consensus 185 ~~qE~~d~~~~a~~lSr~~g-~~V~lr~~t~ 214 (1186)
T PRK13029 185 SVQDYLDYGLHGWAMSRYSG-LWVGMKCVTE 214 (1186)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEEeee
Confidence 88889999999999886432 4565554433
|
|
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=68.85 Aligned_cols=151 Identities=14% Similarity=0.055 Sum_probs=114.7
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCc
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 81 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GP 81 (1065)
|..|++.++++......|++.+.+.|=+...++++.+.+ .+..++..-+|.+|..|+.|-+ .+|. -+...|+||
T Consensus 3 ~~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~-~aGa-r~~TaTSg~ 80 (365)
T COG0674 3 MVVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGAS-YAGA-RAFTATSGQ 80 (365)
T ss_pred eEeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHH-hhCc-ceEeecCCc
Confidence 566899999999999999999999999999999888753 3699999999999999999944 4563 344669999
Q ss_pred chhhhhHHHhhcccCCCcEEEEecCCCCCcCccCC---CcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 82 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG---FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 82 G~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~---~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
|++-+..++.-|.....|+++...+++....+... +|++-+..-. .+..... .+..++-....+|++.|...+
T Consensus 81 Gl~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~~-g~~~~~~--~s~qEa~d~t~~Af~iAe~~~- 156 (365)
T COG0674 81 GLLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAARDT-GFPILVS--ASVQEAFDLTLLAFNIAEKVL- 156 (365)
T ss_pred cHHHHHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHHHHHHHcc-CceEEee--ccHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999988877655533 3332221111 1122222 256777788888898887633
Q ss_pred cccc
Q psy14416 159 GRSL 162 (1065)
Q Consensus 159 GP~~ 162 (1065)
-|+.
T Consensus 157 ~Pvi 160 (365)
T COG0674 157 TPVI 160 (365)
T ss_pred CCEE
Confidence 4433
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=72.61 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=44.5
Q ss_pred chhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 183 GLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 183 gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
++++|+|.+.|..+...+++||+++|||++. |.-+.|-.+...+-+++| |+|++..
T Consensus 194 SiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~liv-ILNDN~m 251 (701)
T PLN02225 194 SISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIV-ILNDSRH 251 (701)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEE-EEeCCCC
Confidence 5999999999988888999999999999964 556777788887777555 5555533
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0033 Score=71.77 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=57.8
Q ss_pred EEecccccc--C-cchhhHHHhhccCccccCCCEEEEEEcCCc-ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--G-FDETTYASIVESGEVTTVLPVILVIVNNNG-IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+=- + +-..+++.. ++||++.+|-||.- | ..+... ....-.+..
T Consensus 164 ~~~GDGat~qG~FhEalN~A~v-------~klPvvf~ieNN~yAi--Svp~~~------------------q~~~~~~~~ 216 (358)
T COG1071 164 AFFGDGATNQGDFHEALNFAAV-------WKLPVVFVIENNQYAI--SVPRSR------------------QTAAEIIAA 216 (358)
T ss_pred EEecCCccccchHHHHHHHHHH-------hcCCEEEEEecCCcee--ecchhh------------------cccchhHHh
Confidence 899998753 3 345688888 99999999888842 2 122210 111223555
Q ss_pred HHHHcCCCeEeeCC--HHHH----HHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCTT--VPQI----KQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~~--~~~l----~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
=+.+||+.+++|.- +-.. ++|.+++.+. .+|+|||+++-+
T Consensus 217 ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g-~GPtLIE~~tYR 262 (358)
T COG1071 217 RAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAG-EGPTLIEAVTYR 262 (358)
T ss_pred hhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEee
Confidence 67899999999963 3333 4444555443 789999999943
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0082 Score=63.49 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=74.8
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDII 254 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~ 254 (1065)
-||+|+|++.|+|.++++++...+.+|.++.|||-++=. =+.+.+++.|+|.-++.+++-++. + .
T Consensus 118 tGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~---------Q----l 184 (243)
T COG3959 118 TGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKL---------Q----L 184 (243)
T ss_pred CCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCc---------c----c
Confidence 589999999999999999999999999999999987654 344558889999977776654311 0 0
Q ss_pred hccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhh
Q psy14416 255 KKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ 301 (1065)
Q Consensus 255 ~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~ 301 (1065)
+ +. ...+...+-|.+..++.|-+ |.=|-|..+..+..+++
T Consensus 185 -d-G~----t~~i~~~~pL~~k~eAFGw~-V~evdG~d~~~i~~a~~ 224 (243)
T COG3959 185 -D-GE----TEEIMPKEPLADKWEAFGWE-VIEVDGHDIEEIVEALE 224 (243)
T ss_pred -C-Cc----hhhccCcchhHHHHHhcCce-EEEEcCcCHHHHHHHHH
Confidence 1 11 12333445567777777754 45567777777776664
|
|
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0078 Score=66.50 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=58.4
Q ss_pred EEEEeccccc-c--Ccch-hhHHHhhccCccccCCC---EEEEEEcCCcccCC-CchhhHhHHhhcCCcccCCCCCCCCC
Q psy14416 929 LVIVNNNGIY-G--GFDE-TTYASIVESGEVTTVLP---VILVIVNNNGIYGG-FDEATYASIVESGEVTTVSPPTSLGP 1000 (1065)
Q Consensus 929 ~~~~~gd~~~-~--~~~~-~~~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1065)
.|++.|||+| + .+++ .+++.+ .++| ++.||.|| +| +. .+.. ....
T Consensus 143 ~v~~~GDgA~~~qG~~~EalNlA~l-------~~lp~gg~ifvveNN-q~-g~sT~~~------------------~~~~ 195 (265)
T cd02016 143 PILIHGDAAFAGQGVVYETLNLSNL-------PGYTTGGTIHIVVNN-QI-GFTTDPR------------------DSRS 195 (265)
T ss_pred EEEEecCccccCCChHHHHHHHHHh-------cCCCCCCEEEEEEeC-CE-EEEecHH------------------Hhcc
Confidence 3499999997 2 2222 255544 5777 78778887 42 11 1110 0112
Q ss_pred CccHHHHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1001 SLRYEKMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1001 ~~~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
..+..+.|++||+.+++|+ ++++..++++++++ ...+|+|||+.+-+
T Consensus 196 ~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR 247 (265)
T cd02016 196 SPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYR 247 (265)
T ss_pred cccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEec
Confidence 3456789999999999875 55566666665553 23789999999954
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.00086 Score=76.71 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=87.9
Q ss_pred ccee-eecceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceee
Q psy14416 851 GEVT-TVLPVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTT 923 (1065)
Q Consensus 851 ~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1065)
|++. +..|-+-..-|++|-+++.|+ |.++|.+... ....-+..|+
T Consensus 96 gHP~~~~~~gie~stGsLGqGl~~av--G~Ala~k~~~~~~n~~~~~~~~~~vy-------------------------- 147 (332)
T PF00456_consen 96 GHPEYGKTPGIEASTGSLGQGLSIAV--GMALAEKMLGARFNKPGFDIIDHRVY-------------------------- 147 (332)
T ss_dssp SSTTTTTSTT-SS--SSTTHHHHHHH--HHHHHHHHHHHHHHBTTBSTTT--EE--------------------------
T ss_pred CCCcccCCceeEeeccchhcchhhHH--HHHHHHHHHHhhhcccccccccceEE--------------------------
Confidence 3443 445555566677777777766 6666653211 0112345788
Q ss_pred eccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCcc
Q psy14416 924 VLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLR 1003 (1065)
Q Consensus 924 ~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1065)
+++|||-+ .-.+.+..+ +-..+++|+=.|+|+++|++ .++ |. +.....-|
T Consensus 148 -------~l~GDGel--~EG~~~EA~--~~A~~~~L~nLi~i~D~N~~--q~d----------g~-------~~~~~~~~ 197 (332)
T PF00456_consen 148 -------VLMGDGEL--QEGSVWEAA--SLAGHYKLDNLIVIYDSNGI--QID----------GP-------TDIVFSED 197 (332)
T ss_dssp -------EEEEHHHH--HSHHHHHHH--HHHHHTT-TTEEEEEEEESE--ETT----------EE-------GGGTHHSH
T ss_pred -------EEecCccc--cchhhHHHH--HHHHHhCCCCEEEEEecCCc--ccC----------CC-------cccccchH
Confidence 99999999 333322222 11267788845555566563 011 11 11112246
Q ss_pred HHHHHHHcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--CcchhhhhH
Q psy14416 1004 YEKMMAVFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADR--KPQNFSWLT 1060 (1065)
Q Consensus 1004 ~~~~~~~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~--~~~~~~~~~ 1060 (1065)
..+--++||.+...| ++.++|.+|++++.+.+++|++|.+.|-..... ...+-.|+.
T Consensus 198 ~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg 259 (332)
T PF00456_consen 198 IAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGKGVPFMEGTAKWHG 259 (332)
T ss_dssp HHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTTTSTTTTTSGGGTS
T ss_pred HHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEEecCchhhcccchhhc
Confidence 688889999999998 799999999999987668999999999765554 223345553
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.003 Score=71.65 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=55.0
Q ss_pred EEecccccc--Ccc-hhhHHHhhccCccccCCCEEEEEEcCC-cccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--GFD-ETTYASIVESGEVTTVLPVILVIVNNN-GIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~v~nn~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+-. .|+ ..+++.. .++|++.||.||+ || ..+.. .+ ...-++..
T Consensus 128 ~~~GDga~~qG~~~EalN~A~~-------~~lPvifvveNN~~ai--st~~~--~~----------------~~~~~~~~ 180 (300)
T PF00676_consen 128 CFFGDGATSQGDFHEALNLAAL-------WKLPVIFVVENNQYAI--STPTE--EQ----------------TASPDIAD 180 (300)
T ss_dssp EEEETGGGGSHHHHHHHHHHHH-------TTTSEEEEEEEESEET--TEEHH--HH----------------CSSSTSGG
T ss_pred EEecCcccccCccHHHHHHHhh-------ccCCeEEEEecCCccc--ccCcc--cc----------------ccccchhh
Confidence 999999974 222 3356655 8999988888884 12 11111 01 12234567
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeC
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILIN 1046 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~ 1046 (1065)
.|++||+.+++|. ++.+.-++++++++ ...+|+|||+.+-
T Consensus 181 ~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~ty 225 (300)
T PF00676_consen 181 RAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTY 225 (300)
T ss_dssp GGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE-
T ss_pred hhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 7899999999985 44555555555442 2379999999994
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.018 Score=62.09 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=62.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccH-HHHHH----hhhcCCCEEEEEEcCCeeeeccccchhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG-MELET----LVRYRLPVILVIVNNNGIYGGFDEATYAWL 251 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~-~eL~t----~vr~~lpivivV~NN~gy~~g~~~~~~~~~ 251 (1065)
.|++|++++.|+|+++- +|+..|+|++|||.+.=.. ...|. +..+++.-++.|++|++| .++-
T Consensus 61 ~G~LG~gLs~A~G~a~d----~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~--~i~~------ 128 (227)
T cd02011 61 GGELGYSLSHAYGAVFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGY--KISN------ 128 (227)
T ss_pred ccchhhHHHHHHHhhhc----CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCC--cccC------
Confidence 57999999999999875 7999999999999943221 11232 223444444444455556 2211
Q ss_pred hhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHH
Q psy14416 252 DIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMA 299 (1065)
Q Consensus 252 ~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a 299 (1065)
. ........+-|.+.++..|.+.++ +-|.....+..+
T Consensus 129 -------p---t~~~~~~~e~l~~~~~~yG~~~~~-VDG~D~~av~~~ 165 (227)
T cd02011 129 -------P---TILARISHEELEALFRGYGYEPYF-VEGDDPETMHQA 165 (227)
T ss_pred -------C---ccccccCchhHHHHHHhCCCceEE-ECCCCHHHHHHH
Confidence 0 000112245688899999999998 578766555443
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >KOG0523|consensus | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.063 Score=64.17 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=54.5
Q ss_pred ccccccCCCcchhHHHHHHhhhcccCC-CCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCe
Q psy14416 173 DAGTFGTMGVGLGFALAAALYCNHYAP-GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNG 238 (1065)
Q Consensus 173 ~~~~~gsmG~gl~~AlGaala~~~~~p-~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~g 238 (1065)
.+-+-|++|.|++.|+|.+.+.+.... +-||+|+.|||+.+=. -+.++.|..|++..+|++++|+.
T Consensus 113 v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~ 181 (632)
T KOG0523|consen 113 VEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNK 181 (632)
T ss_pred ceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEcccc
Confidence 344458999999999999998665444 7899999999998765 56778899999999999998874
|
|
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.018 Score=67.11 Aligned_cols=154 Identities=15% Similarity=0.088 Sum_probs=117.4
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 340 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG 340 (1065)
.-+++.++++...+..|++.+.+.|=++.+++.+.+.+ .+..++..-+|.+|.-|+.|-+.+ |. .+.-.|||||
T Consensus 4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~a-Ga-r~~TaTSg~G 81 (365)
T COG0674 4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYA-GA-RAFTATSGQG 81 (365)
T ss_pred EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhh-Cc-ceEeecCCcc
Confidence 45689999999999999999999999999998877643 479999999999998888776653 33 3445799999
Q ss_pred ccccccccccccccCcceEeecCCCccCCCCC---CCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCC
Q psy14416 341 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGI---GGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 341 ~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~---ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~G 417 (1065)
++=...++.-|...++|+++...+|+....+. +++|++-+. ....+.+.... +.+++-....+|++.|..- .-
T Consensus 82 l~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~-r~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~-~~ 157 (365)
T COG0674 82 LLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAA-RDTGFPILVSA--SVQEAFDLTLLAFNIAEKV-LT 157 (365)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHHHHHH-HccCceEEeec--cHHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999999999999999999876554 233333221 11233333333 6788888889999999763 35
Q ss_pred EEEEecC
Q psy14416 418 VSYLDFP 424 (1065)
Q Consensus 418 PV~L~iP 424 (1065)
||.+.+-
T Consensus 158 Pvi~~~D 164 (365)
T COG0674 158 PVIVLLD 164 (365)
T ss_pred CEEEeec
Confidence 7766643
|
|
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.02 Score=72.77 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=51.4
Q ss_pred cccCCCcchhHHHHHHhhhc-cc------CCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCN-HY------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~-~~------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.-||||.|++.|+|.+++.+ +. ..+++|+|++|||.++=- -+.+..+.+++|+-+++|+|++..
T Consensus 187 sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~ 259 (889)
T TIGR03186 187 PTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQ 259 (889)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 35899999999999999754 22 236899999999998753 566778899999988888887744
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0049 Score=69.92 Aligned_cols=61 Identities=30% Similarity=0.375 Sum_probs=50.8
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
.+.+|..+|.|.|.+++.+....+.-++|+.|||+..=. -..|-.+..+++|+++||-||.
T Consensus 100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~ 162 (300)
T PF00676_consen 100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ 162 (300)
T ss_dssp ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES
T ss_pred cccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC
Confidence 467888899999999999888888899999999993322 4566678899999999999985
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=73.34 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=51.6
Q ss_pred ccCCCcchhHHHHHHhhhc-------ccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 177 FGTMGVGLGFALAAALYCN-------HYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~-------~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
-||||.|++.|++.++... ....+++|+||+|||.++=- -+.+..+.+++|.-+++|+|++.-
T Consensus 202 TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~ 273 (896)
T PRK13012 202 TGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQ 273 (896)
T ss_pred CCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCc
Confidence 5899999999999998754 22456999999999997653 566778899999999999988743
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.042 Score=63.02 Aligned_cols=79 Identities=27% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccC-CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILV 232 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~-p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpiviv 232 (1065)
||.+|.|+.. ....++. ..+.+|..++-|.|++++.+... .++=++++.|||+--=. -..|--+.=|+||+|++
T Consensus 117 Gr~~~~h~~~-~~~~~~~--~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ 193 (358)
T COG1071 117 GRGGSMHYSD-KEKGFLG--GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFV 193 (358)
T ss_pred CCCCcccccc-cccccCC--CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEE
Confidence 7777777642 2222222 35788999999999999988776 44488999999995432 34566778899999998
Q ss_pred EEcCC
Q psy14416 233 IVNNN 237 (1065)
Q Consensus 233 V~NN~ 237 (1065)
|-||.
T Consensus 194 ieNN~ 198 (358)
T COG1071 194 IENNQ 198 (358)
T ss_pred EecCC
Confidence 88885
|
|
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.013 Score=67.65 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.++|.+|++++....++|++|-+.|-.....+
T Consensus 291 D~~~i~~A~~~a~~~~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 291 DPRKVYAAYKKAVEHKGKPTVILAKTIKGYGLG 323 (386)
T ss_pred CHHHHHHHHHHHHhCCCCCeEEEEeCeecCCCC
Confidence 899999999988764579999999997766554
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.014 Score=65.74 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=54.4
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCC-CccccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDG-sf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
...|-++++|.|.++| +|++.||++.||| ++-...+.|.-+.|.|.+|++||+||..| |+
T Consensus 70 s~~gra~a~atGik~A----~~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevY--gn 130 (294)
T COG1013 70 SLHGRAAAVATGIKLA----NPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVY--GN 130 (294)
T ss_pred eccCcchhhHHHHHHh----ccCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeec--cc
Confidence 4467789999999999 8999999999999 67778999999999999999999999987 55
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.036 Score=69.74 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=52.4
Q ss_pred cccCCCcchhHHHHHHhhhcc-------cCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~-------~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.-||||.|++.|+|.+++.+. ...+++|+||+|||.++=- -+.+..+.+++|.-+++|+|+++.
T Consensus 187 sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~ 259 (885)
T TIGR00759 187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQ 259 (885)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 358999999999999998652 2467899999999997753 556778899999988888888754
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.03 Score=61.20 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=44.1
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCC
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~ 237 (1065)
|--+-++++|+|.+.|..+..++++||+++|||++. |.-+.|-.+...+-+++||+-+|.
T Consensus 111 GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~ 172 (270)
T PF13292_consen 111 GHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNE 172 (270)
T ss_dssp SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-S
T ss_pred CccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 344557999999999988888999999999999965 557788888888888777666665
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0057 Score=66.72 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 1006 KMMAVFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1006 ~~~~~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
.+=+.+|.+|+-+ .+.++|.++|+++.+. ++|+||-|.|
T Consensus 229 ~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~-~gPvllHV~T 270 (270)
T PF13292_consen 229 NLFEELGFDYIGPIDGHDLEELIEVLENAKDI-DGPVLLHVIT 270 (270)
T ss_dssp CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS-SSEEEEEEE-
T ss_pred HHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC-CCCEEEEEeC
Confidence 3446779998865 6789999999998876 9999999875
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.022 Score=70.96 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=35.3
Q ss_pred HHHcCCCeE-ee--CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1008 MAVFGHDGY-LC--TTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1008 ~~~~g~~~~-~~--~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
-++||.++. .| ++.++|.++++++.+. ++|++|.+.|.+....+
T Consensus 234 f~~~G~~~~~~vDGhd~~~l~~al~~ak~~-~~P~~i~~~T~KGkG~~ 280 (617)
T TIGR00204 234 FEELGFNYIGPVDGHDLLELIETLKNAKKL-KGPVFLHIQTKKGKGYK 280 (617)
T ss_pred HHHcCCcEEcccCCCCHHHHHHHHHHHhcC-CCCEEEEEEecCCCCCc
Confidence 577999887 34 5888999999987665 78999999998766643
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >KOG0523|consensus | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.033 Score=66.44 Aligned_cols=138 Identities=19% Similarity=0.146 Sum_probs=96.6
Q ss_pred ccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceE
Q psy14416 850 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 929 (1065)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1065)
.|+++..+|-+-+.-|.+|-+++.+. +-+++.+.-. --+-.|+
T Consensus 103 ~ghp~~~~~~v~v~TG~lgQgis~a~--GmA~~~k~~~---k~~~rv~-------------------------------- 145 (632)
T KOG0523|consen 103 PGHPEPELPGVEVATGPLGQGISNAV--GMAYAGKHLG---KASNRVY-------------------------------- 145 (632)
T ss_pred CCCCcccCCCceeccCCccchHHHHH--HHHHHHHhhc---cccceEE--------------------------------
Confidence 46778888888888888877776666 4444332211 0245677
Q ss_pred EEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH-HH
Q psy14416 930 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK-MM 1008 (1065)
Q Consensus 930 ~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 1008 (1065)
+|+|||.. .-.+.++.+ |-.-.+++.-+|+|.+||-|. .+++++..++.|-.+ =+
T Consensus 146 -~vlGDG~~--~eG~~~EA~--s~Ag~l~ldnLVai~D~n~is-------------------~~g~t~~~~~~dV~~~r~ 201 (632)
T KOG0523|consen 146 -CVLGDGCL--TEGSVWEAM--SLAGHLKLDNLVAIYDNNKIS-------------------IDGATSLGFDEDVYQLRF 201 (632)
T ss_pred -EEEcCchh--ccchHHHHH--hhhhhcccCCEEEEEcccccc-------------------CCCCCcccccccHHHHHH
Confidence 99999998 333333332 223558999888888887641 144567777777777 88
Q ss_pred HHcCCCeEeeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 1009 AVFGHDGYLCT--TVPQIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 1009 ~~~g~~~~~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
++||..-+.|. +.++|.+++.++....++|++|-..+-..
T Consensus 202 ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~~g 243 (632)
T KOG0523|consen 202 EAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTAIKATTFIG 243 (632)
T ss_pred HHhCceEEEEcCcCHHHHHHHHhhhhhccCCceeeeeeeeee
Confidence 99999987664 57899999999987778999998877443
|
|
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.017 Score=69.22 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1007 MMAVFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1007 ~~~~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+=+.+|.+|.-. .+.++|..+|+++.+. ++|+|+-|.|.....-+
T Consensus 238 lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~-~gPvllHv~T~KGKGY~ 285 (627)
T COG1154 238 LFEELGFNYIGPIDGHNLEELIPTLKNAKDL-KGPVLLHVVTKKGKGYK 285 (627)
T ss_pred hHHHhCCeeECCcCCCCHHHHHHHHHHHhcC-CCCEEEEEEecCCCCCC
Confidence 557789998754 6789999999999886 99999999997655443
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=69.20 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=105.7
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHH---HhC------C--CeEEEecChhhHHHHHHHHHHhcCCcEE
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC---QQE------G--IHYIGMRNEQAACYAAQAIGYLTKKPGV 74 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al---~~~------~--i~~v~~rhE~~A~~mA~gyar~tg~~gv 74 (1065)
|+.|+|.++++..-.+ +++.+|+.|=++..++.+.+ ... | ..++..-+|.+|..|+.|.+ .+|...
T Consensus 1 ~~~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~-~aGara- 77 (1165)
T TIGR02176 1 MKTMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGAL-QTGALT- 77 (1165)
T ss_pred CeeeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHh-hcCCCE-
Confidence 3568999999998877 99999999977666676666 222 1 27999999999999999944 567544
Q ss_pred EEEeCCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCc---cCCCcccchhhhcccccceeccCCCcccHHHHHHHHHH
Q psy14416 75 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG---IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVR 151 (1065)
Q Consensus 75 ~~~t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g---~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~ 151 (1065)
...|+|||+.-+...|+.+...+.|+++...++.....+ .+.++++. ..+...--.....++.++-.....|++
T Consensus 78 ~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~---~~R~~G~ivl~s~svQEa~D~al~A~~ 154 (1165)
T TIGR02176 78 TTFTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFGDHQDVM---AARQTGFAMLASSSVQEVMDLALVAHL 154 (1165)
T ss_pred EEecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCCCchHHH---HhhcCCeEEEeCCCHHHHHHHHHHHHH
Confidence 466999999999999988777799999999887654333 22334332 112222122333556667777778888
Q ss_pred HhhcCCCcccc
Q psy14416 152 LSTFGKPGRSL 162 (1065)
Q Consensus 152 ~A~~~rpGP~~ 162 (1065)
.|...+ -|++
T Consensus 155 lAe~~~-~Pvi 164 (1165)
T TIGR02176 155 ATIEAR-VPFM 164 (1165)
T ss_pred HHHhcC-CCEE
Confidence 886554 4544
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.14 Score=61.97 Aligned_cols=119 Identities=24% Similarity=0.258 Sum_probs=88.1
Q ss_pred ccCCCcchhHHHHHHhhhccc-----CC-----CCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 177 FGTMGVGLGFALAAALYCNHY-----AP-----GKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~-----~p-----~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
-|++|.|++.|+|.++|.+.. +| +..+.||+|||++|=. -+..+.|-.++|.-+|++.+++.. .
T Consensus 115 TGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~I----s 190 (663)
T COG0021 115 TGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDI----S 190 (663)
T ss_pred cCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCc----e
Confidence 599999999999999975422 23 3699999999998865 455667789999999998877632 1
Q ss_pred cchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHH
Q psy14416 245 EATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324 (1065)
Q Consensus 245 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~a 324 (1065)
+ +........+-+.++.++.|-..+-.+-|.....+.. |.--|
T Consensus 191 i----------------DG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~---------------------Ai~~A 233 (663)
T COG0021 191 I----------------DGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDK---------------------AIEEA 233 (663)
T ss_pred e----------------ccCcccccchhHHHHHHhcCCeEEEecCCCCHHHHHH---------------------HHHHH
Confidence 1 1223445677888999999998888888876655543 34456
Q ss_pred HH-hCCCeEEEEe
Q psy14416 325 YL-TKKPGVCLVV 336 (1065)
Q Consensus 325 r~-tgkpgv~~~t 336 (1065)
+. +.||.+++|.
T Consensus 234 k~~~dkPtlI~~k 246 (663)
T COG0021 234 KASTDKPTLIIVK 246 (663)
T ss_pred HhcCCCCeEEEEE
Confidence 66 7799999985
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.043 Score=66.27 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=65.7
Q ss_pred EEeccccccCcch-hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 931 IVNNNGIYGGFDE-TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 931 ~~~gd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
+++|||.+ |-.. .|..++ .-+++|.=.|++.++|.| .++ |. ++..-+-|..+=-+
T Consensus 153 vl~GDGcl-mEGvs~EA~sl----AG~l~L~kLIvlyD~N~I--siD----------G~-------~~~~f~ed~~~Rfe 208 (663)
T COG0021 153 VLVGDGCL-MEGVSHEAASL----AGHLKLGKLIVLYDSNDI--SID----------GD-------TSLSFTEDVAKRFE 208 (663)
T ss_pred EEecCchH-hcccHHHHHHH----HhhcCCCcEEEEEeCCCc--eec----------cC-------cccccchhHHHHHH
Confidence 89999999 3332 233333 356788877777777775 111 22 22223456677778
Q ss_pred HcCCCeEeeCC---HHHHHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1010 VFGHDGYLCTT---VPQIKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1010 ~~g~~~~~~~~---~~~l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
+||....++.+ .++|.+|++++.+.+++|++|+++|--
T Consensus 209 AyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiI 249 (663)
T COG0021 209 AYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTII 249 (663)
T ss_pred hcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeee
Confidence 99999996655 899999999999876899999999843
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.032 Score=64.76 Aligned_cols=87 Identities=25% Similarity=0.181 Sum_probs=50.4
Q ss_pred EEeccccccC--cc-hhhHHHhhccCccccCCCEEEEEEcCCcccCC-CchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYGG--FD-ETTYASIVESGEVTTVLPVILVIVNNNGIYGG-FDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+..+ |+ ..+++ ...++|++.||.|| + |.. .+.. ......+|.+
T Consensus 165 ~~~GDGa~~eG~~~Ealn~A-------~~~~lPvvfvveNN-~-~aist~~~------------------~~~~~~~~~~ 217 (362)
T PLN02269 165 ALYGDGAANQGQLFEALNIA-------ALWDLPVIFVCENN-H-YGMGTAEW------------------RAAKSPAYYK 217 (362)
T ss_pred EEECCCCcccCHHHHHHHHh-------hccCcCEEEEEeCC-C-EeccCchh------------------hhccchHHHH
Confidence 9999999731 11 22344 34789977777776 4 221 1110 0011223432
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
.++++.+++|. ++.++.++++++.. . .+|+|||+.+-+
T Consensus 218 --~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR 260 (362)
T PLN02269 218 --RGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYR 260 (362)
T ss_pred --hhcCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCc
Confidence 34567677664 55677777776653 4 789999998844
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.057 Score=57.34 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=85.1
Q ss_pred ccceee-ecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccce
Q psy14416 850 SGEVTT-VLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 928 (1065)
Q Consensus 850 ~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1065)
.+++.. ..|.+-+.-|++|-+++.+. +-+++.+... .+..|+
T Consensus 103 ~~Hp~~~~~pgve~stGSLGqGLsvav--GmAlg~kl~~----~~~~Vy------------------------------- 145 (243)
T COG3959 103 PGHPERNKTPGVEVSTGSLGQGLSVAV--GMALGAKLKG----SPYRVY------------------------------- 145 (243)
T ss_pred CCCCccCCCCceeecCCcccccchHHH--HHHHHHhhcC----CCceEE-------------------------------
Confidence 355555 66677777888887777665 4333332222 567888
Q ss_pred EEEEeccccccCcc-hh-hHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 929 LVIVNNNGIYGGFD-ET-TYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 929 ~~~~~gd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||=.. -. .. ...++ .+++|.=.|.+++-|++ .++ |..+. ..+.-+.++
T Consensus 146 --vilGDGEl~-EG~~WEAam~A-----ah~~L~NLiaivD~N~~--Qld----------G~t~~------i~~~~pL~~ 199 (243)
T COG3959 146 --VILGDGELD-EGQVWEAAMTA-----AHYKLDNLIAIVDRNKL--QLD----------GETEE------IMPKEPLAD 199 (243)
T ss_pred --EEecCcccc-cccHHHHHHHH-----HHhccCcEEEEEecCCc--ccC----------Cchhh------ccCcchhHH
Confidence 999999872 11 11 23344 77888744444444442 111 22111 123445677
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
.=++||.+-..|. +.+||.+|++++.+..++|.+|=..+
T Consensus 200 k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~T 240 (243)
T COG3959 200 KWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKT 240 (243)
T ss_pred HHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEec
Confidence 7799999999996 68999999999988646999886655
|
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.07 Score=67.94 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=51.1
Q ss_pred ccCCCcchhHHHHHHhhhc-------ccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCe
Q psy14416 177 FGTMGVGLGFALAAALYCN-------HYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNG 238 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~-------~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~g 238 (1065)
-||||.|++.|++.++... ....+++|+||+|||.++=- -+.+..+.+++|.-+++|+|.+.
T Consensus 194 tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~ 264 (891)
T PRK09405 194 TVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNL 264 (891)
T ss_pred ccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4899999999999998754 12347999999999997753 56677899999999999998773
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.21 Score=62.99 Aligned_cols=100 Identities=21% Similarity=0.166 Sum_probs=61.2
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccH-HHHHHhhh----cCCCEEEEEEcCCeeeeccccchhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG-MELETLVR----YRLPVILVIVNNNGIYGGFDEATYAWL 251 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~-~eL~t~vr----~~lpivivV~NN~gy~~g~~~~~~~~~ 251 (1065)
-|++|++++.|+|+++. .|+..++|++|||++.=.. ...|.+.+ +++.-++.|+.++|| .++
T Consensus 141 ~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~--~Is------- 207 (785)
T PRK05261 141 GGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGY--KIA------- 207 (785)
T ss_pred CCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCC--cCC-------
Confidence 58999999999999987 7999999999999933221 11122111 223333333333455 111
Q ss_pred hhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHH
Q psy14416 252 DIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMA 299 (1065)
Q Consensus 252 ~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~a 299 (1065)
+. .......-+-+.+.++..|.+.++. -|.....+..+
T Consensus 208 ------~p---t~~~~~~~e~l~~rf~g~Gw~~i~V-DG~D~~av~~a 245 (785)
T PRK05261 208 ------NP---TILARISDEELEALFRGYGYEPYFV-EGDDPADMHQE 245 (785)
T ss_pred ------CC---ccccccCcHhHHHHHHHCCCeeEEE-CCCCHHHHHHH
Confidence 11 0111223457889999999999974 78766555444
|
|
| >PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer [] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.049 Score=56.07 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecC-CCCCCCCCCCcccccH-HHHhhh---------
Q psy14416 488 ELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP-MGKGVVPDAHPNCVSA-ARTHAL--------- 556 (1065)
Q Consensus 488 ~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~-~gkg~v~~~hpl~lg~-~~~~al--------- 556 (1065)
..+.++.+|.+||||++++|....+....+.........++|+++|. ..++. ++..|-+ +. .....+
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~-~d~~~ky-~~~~~~~~l~~p~w~g~~ 100 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM-PDYRPKY-PKIEPENELNDPHWNGTD 100 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH-CSSGCCE--HHHHHHHCCSTT--TTT
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc-ccccccc-ccccHHHhcCCCCCCccc
Confidence 34778899999999999999998765545667777778899999987 34443 3333332 21 111111
Q ss_pred --cCCCEEEEeCCcccccc-ccCCCccccCCCeEEEecCCh
Q psy14416 557 --QNADLVLLLGARLNWIL-HFGRAPRFKSNVKIIQVDLNA 594 (1065)
Q Consensus 557 --~~aDlVI~iG~~~~~~~-~~g~~~~~~~~~~iI~Vd~d~ 594 (1065)
.+.|++|.+|..+-.-+ ...-++.+.+..+.+.++...
T Consensus 101 g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~y 141 (167)
T PF02552_consen 101 GHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRYY 141 (167)
T ss_dssp SS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS-
T ss_pred cCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEecccc
Confidence 36899999998764211 111223344555666665543
|
The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B. |
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.072 Score=66.31 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=35.5
Q ss_pred HHHcCCCeEee---CCHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCCCCc
Q psy14416 1008 MAVFGHDGYLC---TTVPQIKQAMKKCLQTT-TRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1008 ~~~~g~~~~~~---~~~~~l~~~~~~~~~~~-~~~~li~~~~~~~~~~~~ 1053 (1065)
=+.+|.+|+-. ++.++|.++|+++.+.. ++|+||-|.|....+.+.
T Consensus 322 Fe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGkd~~t 371 (701)
T PLN02225 322 FEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENRDAET 371 (701)
T ss_pred HHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCCCCCC
Confidence 36788888754 57889999999887651 399999999987766443
|
|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.092 Score=56.79 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=23.6
Q ss_pred CccHHHHHHHcCCCeEeeC--CHHHHHHHHHHHHh
Q psy14416 1001 SLRYEKMMAVFGHDGYLCT--TVPQIKQAMKKCLQ 1033 (1065)
Q Consensus 1001 ~~~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~~ 1033 (1065)
.-+..+.+++||.+.+.|+ +.+++.++++++++
T Consensus 137 ~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~ 171 (227)
T cd02011 137 HEELEALFRGYGYEPYFVEGDDPETMHQAMAATLD 171 (227)
T ss_pred chhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHH
Confidence 4568899999999999886 45566555555443
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.11 Score=64.59 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCeE-ee--CCHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCCCC
Q psy14416 1004 YEKMMAVFGHDGY-LC--TTVPQIKQAMKKCLQTT-TRPSLINILINPSADRK 1052 (1065)
Q Consensus 1004 ~~~~~~~~g~~~~-~~--~~~~~l~~~~~~~~~~~-~~~~li~~~~~~~~~~~ 1052 (1065)
....-++||.++. .| ++.++|.++|+++.... ++|++|-+.|......+
T Consensus 275 ~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~ 327 (641)
T PLN02234 275 SSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYP 327 (641)
T ss_pred HHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcc
Confidence 4677899999998 55 58899999999876542 58999999997766554
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.083 Score=67.68 Aligned_cols=91 Identities=16% Similarity=0.270 Sum_probs=56.4
Q ss_pred EEEeccccc-c--Ccc-hhhHHHhhccCccccCCCE---EEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCc
Q psy14416 930 VIVNNNGIY-G--GFD-ETTYASIVESGEVTTVLPV---ILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSL 1002 (1065)
Q Consensus 930 ~~~~gd~~~-~--~~~-~~~~~~~~~~~~~~~~~~~---~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1065)
|++.|||+| + .++ ..+++.. .++|+ +.||.|| +| +. ++ . +.......
T Consensus 347 v~~~GDgA~agQG~v~EaLNlA~l-------~~lPvGGtIfvveNN-qy-g~---------------tT-~-~~~~~s~~ 400 (929)
T TIGR00239 347 ILIHGDAAFAGQGVVQETLNMSKL-------RGYSVGGTIHIIINN-QI-GF---------------TT-N-PLDARSTP 400 (929)
T ss_pred EEEeccccccCCChHHHHHHHHHh-------cCCCCCCEEEEEEeC-CE-EE---------------EE-c-HHHhcCcc
Confidence 389999998 2 222 3466655 78997 5555555 53 10 11 0 01111233
Q ss_pred cHHHHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeC
Q psy14416 1003 RYEKMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILIN 1046 (1065)
Q Consensus 1003 ~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~ 1046 (1065)
.....|++||+.+++|. +++....+++.+++ ...+|+|||+.+-
T Consensus 401 ~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tY 449 (929)
T TIGR00239 401 YCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGY 449 (929)
T ss_pred CHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 46678999999999886 44555555555542 2379999999993
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=57.73 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=43.3
Q ss_pred cCCCcchhHHHHHHhhhcccCC-----CCeEEEEeCCCCcc--cc-HHHHHHhhhcCCC---EEEEEEcCC
Q psy14416 178 GTMGVGLGFALAAALYCNHYAP-----GKRVVCVQGDSAFG--FS-GMELETLVRYRLP---VILVIVNNN 237 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p-----~rrvV~l~GDGsf~--m~-~~eL~t~vr~~lp---ivivV~NN~ 237 (1065)
+.+|...|.|+|+++|.+.... +.-+|++.|||+|- =. -+.|..+.=+++| +++||.||.
T Consensus 113 S~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq 183 (265)
T cd02016 113 SHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQ 183 (265)
T ss_pred cccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC
Confidence 4578888999999999877652 56779999999973 22 3334445556677 888888885
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.32 Score=54.93 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhh
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHA 555 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~a 555 (1065)
.-+++++++++.|.+||||++.-+. ...-++.+.-.+|+|++|+-+=.+. +-+ .-|..++- ...+.
T Consensus 64 ~~deAie~Aa~ILv~aKrPllyg~s-~tscEA~~~gielaE~~gaviD~~a-svc----hGp~~~alqe~g~p~~Tlgev 137 (429)
T COG1029 64 DYDEAIEKAAEILVNAKRPLLYGWS-STSCEAQELGIELAEKLGAVIDSNA-SVC----HGPSVLALQEAGKPTATLGEV 137 (429)
T ss_pred cHHHHHHHHHHHHHhccCceEeccc-cchHHHHHHHHHHHHHhCcEecCCC-ccc----cchHHHHHHhcCCcccchhhh
Confidence 3478999999999999999998654 3334666777899999998653221 111 01222210 11233
Q ss_pred hcCCCEEEEeCCcccccc----------ccCCCc-cccCCCeEEEecCChhhcccccccceEEEcCH---HHHHHHHHHh
Q psy14416 556 LQNADLVLLLGARLNWIL----------HFGRAP-RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDV---RLTVQQLKQM 621 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~----------~~g~~~-~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~---~~~L~~L~~~ 621 (1065)
-.++|+|+..|+.+-... ..|+.. +=..+..+|.||+......+. .+.+++-.+ .+++.+|...
T Consensus 138 KNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAkl--ad~~~qi~p~sDyelisAl~~~ 215 (429)
T COG1029 138 KNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKL--ADNHVQIKPNSDYELISALRAA 215 (429)
T ss_pred cccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhh--hhheEecCCCCcHHHHHHHHHH
Confidence 458999999998864211 112221 112356788888876533322 233333222 4667777776
Q ss_pred hc
Q psy14416 622 LS 623 (1065)
Q Consensus 622 l~ 623 (1065)
+.
T Consensus 216 l~ 217 (429)
T COG1029 216 LH 217 (429)
T ss_pred hc
Confidence 65
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.17 Score=66.53 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=76.0
Q ss_pred cccccHHHHHHHHHHh-------CCC---cEEEEeCCCChHHHHHHHHh-------CCCeEEEecChhhHHHHHHHHHH-
Q psy14416 6 DEELSANQVIAQALKF-------QGI---EYVFGIVGIPVIELAMACQQ-------EGIHYIGMRNEQAACYAAQAIGY- 67 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~-------~GV---~~vFgvpG~~~~~l~~al~~-------~~i~~v~~rhE~~A~~mA~gyar- 67 (1065)
..-+++.|+|++.+-+ .|+ ..+-|.||++...+.+.|.+ .+|.+-...||..|+-+|.|-++
T Consensus 17 ~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~ 96 (1159)
T PRK13030 17 RIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQV 96 (1159)
T ss_pred CEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccc
Confidence 3458999999999999 999 99999999999999999853 24899999999999999999763
Q ss_pred -------hcCCcEEEEEeCCcchhhhhHHHhhcccCCC----cEEEEecCCCC
Q psy14416 68 -------LTKKPGVCLVVSGPGLLHTFGGMANAQINCW----PMLVIGGSCAQ 109 (1065)
Q Consensus 68 -------~tg~~gv~~~t~GPG~~N~l~gla~A~~~~~----Pll~Isg~~~~ 109 (1065)
..|..+++. .-+||.==+.-+|..+-..++ -||+|+|+=|.
T Consensus 97 ~~~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg 148 (1159)
T PRK13030 97 EADPERTVDGVFAMWY-GKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHG 148 (1159)
T ss_pred cccCCccccceEEEEe-cCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCC
Confidence 344444443 467885444444443333333 67778776543
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.26 Score=61.72 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHcCCCeEe-e--CCHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCCCC
Q psy14416 1007 MMAVFGHDGYL-C--TTVPQIKQAMKKCLQTT-TRPSLINILINPSADRK 1052 (1065)
Q Consensus 1007 ~~~~~g~~~~~-~--~~~~~l~~~~~~~~~~~-~~~~li~~~~~~~~~~~ 1052 (1065)
+-+.||.+|+- | ++.++|.++|+++.... ++|++|-|.|.+....+
T Consensus 277 ~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~ 326 (677)
T PLN02582 277 LFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYP 326 (677)
T ss_pred hHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCC
Confidence 45789999873 3 58899999999887642 59999999997766554
|
|
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.2 Score=64.47 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=58.2
Q ss_pred EEEeccccc-c--Ccch-hhHHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCc
Q psy14416 930 VIVNNNGIY-G--GFDE-TTYASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSL 1002 (1065)
Q Consensus 930 ~~~~gd~~~-~--~~~~-~~~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1065)
|++.|||+| + .+++ .+++.. .++| ++.||.|| +| +. ++ ++ .......
T Consensus 346 v~~~GDgA~agqG~v~EalNlA~l-------~~lp~ggvIfvveNN-q~-g~---------------tT-~~-~~~~s~~ 399 (924)
T PRK09404 346 ILIHGDAAFAGQGVVAETLNLSQL-------RGYRTGGTIHIVINN-QI-GF---------------TT-SP-PDDRSTP 399 (924)
T ss_pred EEEecCccccCCChHHHHHHHHHh-------cCCCCCCEEEEEEeC-CE-EE---------------ee-CH-HHhccch
Confidence 389999998 3 3332 366655 5666 88888888 42 11 00 00 0011233
Q ss_pred cHHHHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1003 RYEKMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1003 ~~~~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
.....|++||+.+++|. +++....+++.+++ ...+|+|||+.+-+
T Consensus 400 ~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 400 YCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred hHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 45789999999999875 55566666655543 23799999999944
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.51 Score=62.92 Aligned_cols=150 Identities=14% Similarity=0.046 Sum_probs=105.5
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHh---hcC------C--ceEEEccCCchHHHHHHHHHHHhCCCeEEE
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC---QQE------G--IHYIGMRNEQAACYAAQAIGYLTKKPGVCL 334 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al---~~~------~--i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~ 334 (1065)
.+++.++++..-.+ |++.+|+.|=++.+++.+.+ ... | .+++..-+|.+|..|+.|.+ .+|.. +..
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~-~aGar-a~T 79 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGAL-QTGAL-TTT 79 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHh-hcCCC-EEE
Confidence 46788888888777 99999999977777776655 221 1 27999999999999999954 45643 456
Q ss_pred EeccccccccccccccccccCcceEeecCCCccCCCC---CCCCCccChhhhhcccccE-EeeCCChhhHHHHHHHHHHH
Q psy14416 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEG---IGGFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRL 410 (1065)
Q Consensus 335 ~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g---~ga~Q~idQ~~l~~~~~k~-s~~l~~~~~i~~~i~~A~~~ 410 (1065)
.|||+|++=+.+.+..+.-.++|+|+..+.|.....+ .++++++.+. | -+-| .....++.++....-.|+..
T Consensus 80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~---R-~~G~ivl~s~svQEa~D~al~A~~l 155 (1165)
T TIGR02176 80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFGDHQDVMAA---R-QTGFAMLASSSVQEVMDLALVAHLA 155 (1165)
T ss_pred ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCCCchHHHHh---h-cCCeEEEeCCCHHHHHHHHHHHHHH
Confidence 7999999999999987777799999999998765433 2233333211 1 1223 22345677778888888888
Q ss_pred hhcCCCCEEEEec
Q psy14416 411 STFGKPGVSYLDF 423 (1065)
Q Consensus 411 A~~~~~GPV~L~i 423 (1065)
|...+ -||.+.+
T Consensus 156 Ae~~~-~Pvi~~~ 167 (1165)
T TIGR02176 156 TIEAR-VPFMHFF 167 (1165)
T ss_pred HHhcC-CCEEEEe
Confidence 86544 3554443
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.28 Score=64.44 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=74.4
Q ss_pred ccccHHHHHHHHHHh-------CCC---cEEEEeCCCChHHHHHHHHh-------CCCeEEEecChhhHHHHHHHH----
Q psy14416 7 EELSANQVIAQALKF-------QGI---EYVFGIVGIPVIELAMACQQ-------EGIHYIGMRNEQAACYAAQAI---- 65 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~-------~GV---~~vFgvpG~~~~~l~~al~~-------~~i~~v~~rhE~~A~~mA~gy---- 65 (1065)
.-+++.|+|++.+-+ .|+ ..+-|.||++...+.+.|.+ .+|.+-...||..|+-+|-|-
T Consensus 26 ~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~ 105 (1165)
T PRK09193 26 VFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVN 105 (1165)
T ss_pred eeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccc
Confidence 458999999999887 999 99999999999999988853 349999999999999999554
Q ss_pred ----HHhcCCcEEEEEeCCcchhhhhHHHhhcccC----CCcEEEEecCCCC
Q psy14416 66 ----GYLTKKPGVCLVVSGPGLLHTFGGMANAQIN----CWPMLVIGGSCAQ 109 (1065)
Q Consensus 66 ----ar~tg~~gv~~~t~GPG~~N~l~gla~A~~~----~~Pll~Isg~~~~ 109 (1065)
++..|..+++. .-|||.==+.-++..|-.. +=-||+++|+=+.
T Consensus 106 ~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg 156 (1165)
T PRK09193 106 LFPGAKYDGVFGMWY-GKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHA 156 (1165)
T ss_pred cccceeeccceEEEe-cCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCC
Confidence 34456555554 4678853333444333222 3367888876554
|
|
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.37 Score=55.57 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=38.3
Q ss_pred CCCCeEEEEeCCC-CccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 198 APGKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 198 ~p~rrvV~l~GDG-sf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
-|.+.||++.||| ++-...+.|.-+.+.|.++++||+||..|
T Consensus 149 l~~~~v~v~gGDG~~ydIG~~~l~ha~~r~~ni~~iv~DNe~Y 191 (365)
T cd03377 149 LVKKSVWIIGGDGWAYDIGYGGLDHVLASGENVNILVLDTEVY 191 (365)
T ss_pred ccccceEEEecchhhhccchhhHHHHHHcCCCeEEEEECCccc
Confidence 3668999999999 57788999999999999999999999988
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.56 Score=61.58 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=66.5
Q ss_pred cCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhc
Q psy14416 178 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKK 256 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~ 256 (1065)
-+||.+.+..+|.+-. ..+++|+..+|||-|.=+ +..|-.++..+.+++++|+.|+ .-.|.=
T Consensus 495 ~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N~--avAMTG----------- 557 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYND--AVAMTG----------- 557 (1186)
T ss_pred eccCcchhhheeeccc----CCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeCc--chhccC-----------
Confidence 4566555555555544 467899999999998766 8889999999999999999999 545521
Q ss_pred cCCCcccccCccHHHHHHHHHHhcCceEEEeec
Q psy14416 257 SNMSEDYDEELSANQVIAQALKFQGIEYVFGIV 289 (1065)
Q Consensus 257 ~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~p 289 (1065)
+=+... .+ ..+.|++.|+..||++|..+-
T Consensus 558 -gQp~~G--~~-~v~~i~~~~~a~GV~~v~vv~ 586 (1186)
T PRK13029 558 -GQPVDG--VL-TVPQIARQVHAEGVRRIVVVT 586 (1186)
T ss_pred -CCCCCC--cC-CHHHHHHHHHhCCccEEEEeC
Confidence 111111 22 356788899999999998876
|
|
| >cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.14 Score=56.06 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=46.8
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHH
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L 618 (1065)
....+++||++|++|+++.-.....+........+++.|+.++...+.....++.+.+++.++|..|
T Consensus 169 ~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 169 MEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 3356778999999999976433333322223456788899988765523457899999999999764
|
Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity. |
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.47 Score=60.73 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+.++|.+|++++.+..++|++|.+.|-....
T Consensus 362 D~~~i~~A~~~A~~~~~~PTvIla~TvkG~G 392 (889)
T TIGR03186 362 DARKLYAAYDRAVRHEGRPTVILAKTMKGFG 392 (889)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEeeecCC
Confidence 7899999999998766799999999865433
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.1 Score=45.69 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=78.9
Q ss_pred eEE-EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc-cccccCcceEeecCCCccCC-CCCCCCCccChhh
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA-NAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVE 382 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~-eA~~~~vPLlvItg~~p~~~-~g~ga~Q~idQ~~ 382 (1065)
|++ .-..|++.+-+|.|.|.. |. .+++.+...-..-++..+. ++-..+.|++++........ .+-..+|.+++..
T Consensus 40 r~i~~gIaE~~~vg~A~GlA~~-G~-~pi~~~~~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a 117 (156)
T cd07033 40 RFIDVGIAEQNMVGIAAGLALH-GL-KPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIA 117 (156)
T ss_pred CeEEeChhHHHHHHHHHHHHHC-CC-eEEEEECHHHHHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHH
Confidence 555 568899999999999965 54 3333444444555566666 77788999999987554443 2334567888899
Q ss_pred hhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 383 LARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 383 l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
+++.+-... +...+++++...++.|++. ++|++|-+|
T Consensus 118 ~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-----~~P~~irl~ 155 (156)
T cd07033 118 LLRAIPNMTVLRPADANETAAALEAALEY-----DGPVYIRLP 155 (156)
T ss_pred HhcCCCCCEEEecCCHHHHHHHHHHHHhC-----CCCEEEEee
Confidence 999887764 4566777777777777643 369999887
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.58 Score=60.09 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+.+++.+|++++.+..++|++|-+.|-....
T Consensus 376 D~~~i~~A~~~a~~~~~~PtvIla~TvkG~G 406 (896)
T PRK13012 376 DPRKVYAAYAAAVRHKGQPTVILAKTKKGYG 406 (896)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEeeecCC
Confidence 7889999999888665799999999866444
|
|
| >PRK11916 electron transfer flavoprotein subunit YdiR; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.48 Score=53.88 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=79.8
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC---CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccc
Q psy14416 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM---GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 498 ~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~---gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
+|+ .++-+|+|....+..+.+++||+.+|.-|-+|-- ..|.+|.+ ..+|..... -.|||.|.+|-+=.-...
T Consensus 193 ~A~-vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~--~QIGqTGk~--V~P~lYiA~GISGAiQH~ 267 (312)
T PRK11916 193 KAK-RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE--RYIGVSGVL--LKSDLYLTLGISGQIQHM 267 (312)
T ss_pred cCC-EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChh--cEECCCCCC--cCccEEEEeccccHHHHH
Confidence 443 3444555666556689999999999999887743 12455543 345644432 278999999976444344
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.|. .....+|-||.|+.. --+...|..|++|..+++.+|.+.++
T Consensus 268 aGm----~~s~~IVAIN~Dp~A-PIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 268 VGG----NGAKVIVAINKDKNA-PIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred hhc----ccCCEEEEECCCCCC-CchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 443 234578999999863 22345799999999999999998765
|
|
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.7 Score=59.74 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred CCCcchhHHHHHHhhhcccCCC------CeEEEEeCCCCcc--cc-HHHHHHhhhcCCC---EEEEEEcCC
Q psy14416 179 TMGVGLGFALAAALYCNHYAPG------KRVVCVQGDSAFG--FS-GMELETLVRYRLP---VILVIVNNN 237 (1065)
Q Consensus 179 smG~gl~~AlGaala~~~~~p~------rrvV~l~GDGsf~--m~-~~eL~t~vr~~lp---ivivV~NN~ 237 (1065)
.+|...|.|+|+++|.+....+ .-+|++.|||+|- =. -..|.-+.-+++| +++||.||.
T Consensus 315 hleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq 385 (924)
T PRK09404 315 HLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ 385 (924)
T ss_pred ccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC
Confidence 3577789999999998776555 5678999999982 22 4455556677887 888888884
|
|
| >PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.5 Score=53.76 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=78.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCC---CCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG---KGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~g---kg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
.++-.|+|....+..+.+++||+.+|.-|-+|--. .|.+|. ...+|...... .|||.|.+|-+=.-....|.
T Consensus 197 vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~--~~QIGqTGk~V--~P~lYiA~GISGaiQH~~Gm- 271 (313)
T PRK03363 197 LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH--ERYVGISNLML--KPELYLAVGISGQIQHMVGA- 271 (313)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCH--HheecCCCCCc--CccEEEEEccccHHHHHhhc-
Confidence 34445556666677889999999999999877432 235553 44566544422 79999999976444334443
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....+|-||.|+... -+...|..|++|..+++.+|.++++
T Consensus 272 ---~~s~~IVAIN~Dp~AP-IF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 272 ---NASQTIFAINKDKNAP-IFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred ---ccCCEEEEEcCCCCCC-chhhCCeeEeeeHHHHHHHHHHHhh
Confidence 2345788899998532 2345799999999999999998775
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.86 Score=57.68 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=33.5
Q ss_pred CccHHHHHHHcCCCeEeeC--CHHHHHHH----HHHHHh----------cC---CCCE--EEEEEeCCC
Q psy14416 1001 SLRYEKMMAVFGHDGYLCT--TVPQIKQA----MKKCLQ----------TT---TRPS--LINILINPS 1048 (1065)
Q Consensus 1001 ~~~~~~~~~~~g~~~~~~~--~~~~l~~~----~~~~~~----------~~---~~~~--li~~~~~~~ 1048 (1065)
.-+..+..++||.+.+.|+ +++++.++ ++.|++ .+ ++|+ +|.+.+...
T Consensus 217 ~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG 285 (785)
T PRK05261 217 DEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKG 285 (785)
T ss_pred cHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCcc
Confidence 3578899999999999886 55555555 333333 22 5888 999998663
|
|
| >KOG0225|consensus | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.34 Score=54.23 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=55.0
Q ss_pred ccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccccchhh
Q psy14416 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFDEATYA 249 (1065)
Q Consensus 175 ~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~ 249 (1065)
++.|..|..+|.+.|+++|++-.+.+.-++.|-|||+..-. -..+--+.=|+||+|.|+=||. | ||-...|+
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~-y--GMGTs~~R 235 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNH-Y--GMGTSAER 235 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCC-C--ccCcchhh
Confidence 34677888899999999998877778889999999997654 3344456678999999888884 6 66434443
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.76 Score=58.32 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
+.++|.+|++++.+..++|++|-+.|-.....
T Consensus 362 D~~~I~~A~~~A~~~~grPTvIlA~TvKG~G~ 393 (885)
T TIGR00759 362 DPRKVYAAYAAAQEHKGQPTVILAKTIKGYGM 393 (885)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEeeeecCCC
Confidence 78999999998887657999999998664443
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=1 Score=52.99 Aligned_cols=133 Identities=13% Similarity=0.183 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcC---CCEE--ecCCCCCCCCCCCccccc------------
Q psy14416 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFN---LPFL--PTPMGKGVVPDAHPNCVS------------ 549 (1065)
Q Consensus 487 ~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg---~PV~--tt~~gkg~v~~~hpl~lg------------ 549 (1065)
.+.++++++|..|+|.+|+=|.|..-+++..++++|+|.+. .-|= --|.+ |..|-+-.-.+.
T Consensus 294 ~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVA-GRMPGHMNVLLAEA~VPYd~v~eM 372 (462)
T PRK09444 294 TTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA-GRLPGHMNVLLAEAKVPYDIVLEM 372 (462)
T ss_pred cCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc-ccCCCcceeEEeecCCCHHHHHhH
Confidence 34567889999999999999999888888888888887763 3221 11211 233322221221
Q ss_pred HHHHhhhcCCCEEEEeCCccc---------cccccCCCc-cccCCCeEEEecCChhhccc--------ccccceEEEcCH
Q psy14416 550 AARTHALQNADLVLLLGARLN---------WILHFGRAP-RFKSNVKIIQVDLNAEELHN--------SVQAAVAIQSDV 611 (1065)
Q Consensus 550 ~~~~~al~~aDlVI~iG~~~~---------~~~~~g~~~-~~~~~~~iI~Vd~d~~~~~~--------~~~~~~~I~~D~ 611 (1065)
...+..+.+.|++|++|+.-. ....+|.+- ...+.++++.+..+- ..+. +..-+.-+.+|+
T Consensus 373 deIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~-~~GyAGv~NpLF~~~nt~MlfGDA 451 (462)
T PRK09444 373 DEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSM-NTGYAGVQNPLFFKENTQMLFGDA 451 (462)
T ss_pred HhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCC-CCCcCCCCCcceecCCceEEeccH
Confidence 123456779999999997532 112233321 111223444444322 1221 223455588999
Q ss_pred HHHHHHHHHh
Q psy14416 612 RLTVQQLKQM 621 (1065)
Q Consensus 612 ~~~L~~L~~~ 621 (1065)
++.+++|.+.
T Consensus 452 K~~~~~l~~~ 461 (462)
T PRK09444 452 KASVDAILKA 461 (462)
T ss_pred HHHHHHHHHh
Confidence 9999988654
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.86 Score=58.72 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCcchhHHHHHHhhhcccCC------CCeEEEEeCCCCcc-c-c-HHHHHHhhhcCCCE---EEEEEcCCee
Q psy14416 180 MGVGLGFALAAALYCNHYAP------GKRVVCVQGDSAFG-F-S-GMELETLVRYRLPV---ILVIVNNNGI 239 (1065)
Q Consensus 180 mG~gl~~AlGaala~~~~~p------~rrvV~l~GDGsf~-m-~-~~eL~t~vr~~lpi---vivV~NN~gy 239 (1065)
++...|.++|.+.|.+.... +.-+|++.|||+|- - . ...|.-+.-+++|+ ++||.||. |
T Consensus 317 Leav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNq-y 387 (929)
T TIGR00239 317 LEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQ-I 387 (929)
T ss_pred cccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-E
Confidence 67778999999999876543 45678999999972 2 1 45566677889997 77788874 5
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >PLN00022 electron transfer flavoprotein subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.59 Score=54.10 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=77.6
Q ss_pred EEE-EccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 503 LVI-IGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 503 vIl-vG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
+|| +|.|....+..+.+++||+.+|.-|-+|-- -.|.+|. ...+|..... -.|||.|.+|-+=.-....|.
T Consensus 239 vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~--~~QIGqTGk~--V~P~lYIA~GISGAiQH~~Gm-- 312 (356)
T PLN00022 239 VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPN--DLQVGQTGKI--VAPELYIAVGISGAIQHLAGM-- 312 (356)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCCh--HheeccCCCC--cCCcEEEEEecchHHHHHhhc--
Confidence 555 455665556788999999999998876643 2345543 3345544432 279999999976443334443
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....||-||.|+.. --+...|..|++|..+++.+|.++++
T Consensus 313 --~~s~~IVAIN~D~~A-PIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 313 --KDSKVIVAINKDADA-PIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred --ccCCEEEEECCCCCC-CchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 234578889999853 22345799999999999999999876
|
|
| >COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.54 Score=53.23 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=80.7
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCcccccccc
Q psy14416 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 498 ~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
+|+ .++-.|.|....+..+.+.+||+.+|.-|-++-. -.|.+|.++ .+|.... .-.|||-|.+|-+=.-....
T Consensus 194 ~A~-iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGqTGk--~V~P~LYIA~GISGAiQHla 268 (313)
T COG2025 194 EAK-IVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQTGK--TVAPKLYIALGISGAIQHLA 268 (313)
T ss_pred cce-EEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecCCCc--EecccEEEEEecccHHHHHh
Confidence 444 3444566666666677899999999999987643 245666544 4564443 23899999999664433333
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
|. .....+|-||.|+.. --+...|..|++|..+++.+|.+.++
T Consensus 269 Gm----~~Sk~IVAINkD~nA-PIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 269 GM----KDSKVIVAINKDPNA-PIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred hc----ccCcEEEEEcCCCCC-CccccCCeeeeeeHHHHHHHHHHHHh
Confidence 43 234578888888753 33456899999999999999999886
|
|
| >PRK14138 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=0.75 Score=50.71 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=49.7
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
..+.+.+||++|++|+++.-.....+... .....+++.||.++...+. ..++.+.+++.++|.+|.+.+
T Consensus 172 ~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~--~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 172 AIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD--IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc--ceeEEEeCCHHHHHHHHHHHh
Confidence 34556799999999999764333332211 1245788889998877664 368999999999999998754
|
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=87.99 E-value=2 Score=55.13 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
+.++|.+|++++.+..++|++|-+.|-.....
T Consensus 368 D~~~i~~A~~~A~~~~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 368 DPRKVYAAYKAAVEHKGQPTVILAKTIKGYGM 399 (891)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEeceecCCC
Confidence 78999999998887668999999998665443
|
|
| >cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.4 Score=50.19 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccc-cc---HHHHhhhcCC
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNC-VS---AARTHALQNA 559 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~-lg---~~~~~al~~a 559 (1065)
.=+++++.+++.|+++++|+++ |.+.........+.+|++.+|..+- .....+..+..+.+. .+ ....+...++
T Consensus 55 sWdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~di~~~a 132 (415)
T cd02761 55 SLEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQDSGWPTTTLGEVKNRA 132 (415)
T ss_pred CcHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHhCCCccccHHHHHhcC
Confidence 3478899999999999999887 4444433455678899999997442 111111111111110 11 1112222479
Q ss_pred CEEEEeCCccccccccCC------Ccc-----ccCCCeEEEecCChhhcc
Q psy14416 560 DLVLLLGARLNWILHFGR------APR-----FKSNVKIIQVDLNAEELH 598 (1065)
Q Consensus 560 DlVI~iG~~~~~~~~~g~------~~~-----~~~~~~iI~Vd~d~~~~~ 598 (1065)
|+||.+|+.+.......+ .+. ..+..+++.||+......
T Consensus 133 d~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta 182 (415)
T cd02761 133 DVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTA 182 (415)
T ss_pred CEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchh
Confidence 999999988754321111 000 124568999998775543
|
Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >smart00861 Transket_pyr Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
Probab=86.73 E-value=4.1 Score=41.98 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=72.3
Q ss_pred EE-EccCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccccccc-CcceEeecCCCccCCCCCCC-CCccChhhh
Q psy14416 307 YI-GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQIN-CWPMLVIGGSCAQDHEGIGG-FQECPQVEL 383 (1065)
Q Consensus 307 ~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~-~vPLlvItg~~p~~~~g~ga-~Q~idQ~~l 383 (1065)
++ .-..|++..-+|.|+|....+|.+ .+..+-+.-....+..+-.. ++|+|+.... ....-+.|. +|..++..+
T Consensus 51 ~~~~gIaE~~~vg~a~GlA~~G~~pi~--~~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~-g~~~g~~G~tH~~~~~~~~ 127 (168)
T smart00861 51 VIDTGIAEQAMVGFAAGLALAGLRPVV--AIFFTFFDRAKDQIRSDGAMGRVPVVVRHDS-GGGVGEDGPTHHSQEDEAL 127 (168)
T ss_pred EEEcCcCHHHHHHHHHHHHHcCCCcEE--EeeHHHHHHHHHHHHHhCcccCCCEEEEecC-ccccCCCCccccchhHHHH
Confidence 55 678999999999999987554443 44444444444444443333 4666554422 122222243 888999999
Q ss_pred hcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 384 ARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 384 ~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
++.+.... +...+++++...++.++. ...||++|-++.
T Consensus 128 ~~~iP~~~v~~P~~~~e~~~~l~~a~~----~~~~p~~i~~~~ 166 (168)
T smart00861 128 LRAIPGLKVVAPSDPAEAKGLLRAAIR----RDDGPPVIRLER 166 (168)
T ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCCEEEEecC
Confidence 99887654 567788888888887773 335899998873
|
Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. |
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=86.65 E-value=1.4 Score=46.05 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=73.4
Q ss_pred eEE-EccCCchHHHHHHHHHHHhC-CCeEEEEecccccc----ccccccc-cccccCcceEeecCCCccCCCCCCCCCcc
Q psy14416 306 HYI-GMRNEQAACYAAQAIGYLTK-KPGVCLVVSGPGLL----HTFGGMA-NAQINCWPMLVIGGSCAQDHEGIGGFQEC 378 (1065)
Q Consensus 306 ~~i-~~~~E~~A~~~A~g~ar~tg-kpgv~~~tsGpG~~----N~~~av~-eA~~~~vPLlvItg~~p~~~~g~ga~Q~i 378 (1065)
|++ .-..|++..-+|.|+|..-+ ++.++. +.++=+. =...++. .....+.|+.+++...-....+-+.+|.+
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~-~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~ 127 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVES-TFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSI 127 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEE-EEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSS
T ss_pred eEEecCcchhhccceeeeeeecccccceeEe-eccccccccchhhhhhhhhhhhcccceecceeecCccccccccccccc
Confidence 555 56889999999999997654 655554 3333222 1222333 45667778774443332233344667888
Q ss_pred ChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhh
Q psy14416 379 PQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANL 427 (1065)
Q Consensus 379 dQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv 427 (1065)
+...+++.+-.+.. ...++.++...++.|++. ...|||+|-.|...
T Consensus 128 ~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 128 EDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIREPRGL 174 (178)
T ss_dssp SHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEEESSE
T ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEeeHHh
Confidence 99999999988755 456777777776666652 23699999998654
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane [] | Back alignment and domain information |
|---|
Probab=85.04 E-value=1.7 Score=51.81 Aligned_cols=132 Identities=15% Similarity=0.224 Sum_probs=72.5
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCcccc-----------c-HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCV-----------S-AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~l-----------g-~~ 551 (1065)
.+++++.|..|||.+|+-|.|..-+++..++++|++.+ |.-|- --|.+ |..|-+-.-.+ . ..
T Consensus 297 ~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGHMNVLLAEa~VpYd~~~emde 375 (463)
T PF02233_consen 297 AEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVA-GRMPGHMNVLLAEANVPYDIVKEMDE 375 (463)
T ss_dssp HHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTS-SSSTTHHHHHHHHCT--GGGEEEHHH
T ss_pred HHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEecccc-CCCCCcceEEEEecCCCHHHHhhhhh
Confidence 56788899999999999999877666666677766665 44432 22222 23332111011 1 13
Q ss_pred HHhhhcCCCEEEEeCCccc---------cccccCCCc-cccCCCeEEEecCChh----hcc--cc-cccceEEEcCHHHH
Q psy14416 552 RTHALQNADLVLLLGARLN---------WILHFGRAP-RFKSNVKIIQVDLNAE----ELH--NS-VQAAVAIQSDVRLT 614 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~---------~~~~~g~~~-~~~~~~~iI~Vd~d~~----~~~--~~-~~~~~~I~~D~~~~ 614 (1065)
.+..+.+.|++|++|+.-. ....+|.+- +..+.+++|.+..+-. .++ -+ ..-+.-+.+|+++.
T Consensus 376 iN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfGDAk~~ 455 (463)
T PF02233_consen 376 INPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFGDAKKT 455 (463)
T ss_dssp HGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES-HHHH
T ss_pred cccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcEEEeccHHHH
Confidence 4667889999999997632 112334321 1113345665554322 111 12 23455689999999
Q ss_pred HHHHHHh
Q psy14416 615 VQQLKQM 621 (1065)
Q Consensus 615 L~~L~~~ 621 (1065)
+++|..+
T Consensus 456 ~~~l~~~ 462 (463)
T PF02233_consen 456 LEELVAE 462 (463)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
|
It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C .... |
| >PRK00481 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.7 Score=47.93 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=48.5
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
...++++|++|.+|+++.-......... ..++.++|.|+.++...+.. .++.+.+|+.++|..|.+.+
T Consensus 172 ~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~--~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 172 YEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSL--FDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCc--cCEEEECCHHHHHHHHHHHh
Confidence 3456789999999988753222222210 23567899999998766543 58899999999999887654
|
|
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=83.30 E-value=4.7 Score=41.17 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeE-EEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHH
Q psy14416 12 NQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHY-IGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 89 (1065)
Q Consensus 12 ~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~-v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~g 89 (1065)
++.|.+.+++.. +.+..-.+-........+.+ ..-++ -.-..|++.+.+|.|.+. .|...++. +...=..-+...
T Consensus 4 ~~~l~~~~~~~~-~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~-~G~~pi~~-~~~~f~~ra~dq 80 (156)
T cd07033 4 GEALLELAKKDP-RIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLAL-HGLKPFVS-TFSFFLQRAYDQ 80 (156)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHH-CCCeEEEE-ECHHHHHHHHHH
Confidence 456666666642 33333233111122223322 12233 356789999999999996 46555554 443344555566
Q ss_pred Hh-hcccCCCcEEEEecCCCCCc-CccCCCcccchhhhcccccce-eccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 90 MA-NAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 90 la-~A~~~~~Pll~Isg~~~~~~-~g~~~~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
|. ++...+.|++++........ ..-..||..++..+++.+-.. .+...+++++...++.|++. ++|+++.
T Consensus 81 i~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-----~~P~~ir 153 (156)
T cd07033 81 IRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY-----DGPVYIR 153 (156)
T ss_pred HHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC-----CCCEEEE
Confidence 66 77888999999986443333 233457788888898888644 34556666676666666643 2566653
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >TIGR00300 conserved hypothetical protein TIGR00300 | Back alignment and domain information |
|---|
Probab=82.98 E-value=5.8 Score=45.84 Aligned_cols=141 Identities=25% Similarity=0.261 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHHHHHHHhC----CCcEEEEccCCCchhHHHHHHHHHhhcCCCEE----------------ecCCCCC-
Q psy14416 480 TLPWPGIAELKQASRLILEA----KAPLVIIGKGAAYSQAETELLSFVNSFNLPFL----------------PTPMGKG- 538 (1065)
Q Consensus 480 ~~~~p~~~~v~~~ae~L~~A----krPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~----------------tt~~gkg- 538 (1065)
....|....++++++.|+.- -+.+.++|....+.++.++|.+|++.==+-.+ -|.+|..
T Consensus 178 S~E~p~~~~~~~ia~~lr~~r~~gG~Iv~V~GPAvvhtga~~ala~Lir~GYV~~LlaGNAlAtHDiE~al~GTsLG~di 257 (407)
T TIGR00300 178 SSERPVETLIEQIAWEMYEIRDKGGKIGVVAGPAVIHTGAAQALAHLIREGYVDALLAGNALAVHDIEQALYGTSLGVDI 257 (407)
T ss_pred CcCCccHHHHHHHHHHHHHHHHCCCCEEEEecCeEEecCcHHHHHHHHHcCcccEEecchHHHHhhhhHhhhCccccccc
Confidence 34456777888888777543 45677778777777888999999876322222 1222211
Q ss_pred ----CCCCCCccccc----------------------------------------------------------HHHHhhh
Q psy14416 539 ----VVPDAHPNCVS----------------------------------------------------------AARTHAL 556 (1065)
Q Consensus 539 ----~v~~~hpl~lg----------------------------------------------------------~~~~~al 556 (1065)
.++..|-+++. .+-++.+
T Consensus 258 ~~~~~v~~GH~~Hl~~IN~irraGSI~~aVe~G~l~~Gimy~cvk~~VPfVLAGSIRDDGPLPdvitDv~~AQ~amR~~~ 337 (407)
T TIGR00300 258 QRGIPVPGGHRHHLKAINSVRRAGGIRDAVEQGIIKKGVMYECVKNNIPYVLAGSIRDDGPLPDVITDVVRAQSKMRELL 337 (407)
T ss_pred cccccCCCchHHHHHHHHHHHHcCCHHHHHHhCCCccchHHHHHhCCCCEEEeeeccCCCCCCcchhhHHHHHHHHHHHh
Confidence 22333332221 0124567
Q ss_pred cCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcc----cccccceEEEcCHHHHHHHHHHhhc
Q psy14416 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELH----NSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 557 ~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~----~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
+++|+||.+.+.+-+..+...++.+ .+++-||.+|.... +...-.+.++.|+.+|+..|.+.|.
T Consensus 338 ~~a~~vimlaTmLHSIAtGNm~Ps~---v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 338 QGADMVLMLSTMLHSIAVGNLLPSG---VKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred ccCCeehhHHHHHHHHhhccccccc---ceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 8999999999999988777776543 47888999986553 3344567899999999999988764
|
All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family. |
| >KOG3954|consensus | Back alignment and domain information |
|---|
Probab=82.86 E-value=3.1 Score=45.33 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=81.9
Q ss_pred HHHHHHhCCCc------EEEEccCCCc-hhHHHHHHHHHhhcCCCEEecCCC--CCCCCCCCcccccHHHHhhhcCCCEE
Q psy14416 492 ASRLILEAKAP------LVIIGKGAAY-SQAETELLSFVNSFNLPFLPTPMG--KGVVPDAHPNCVSAARTHALQNADLV 562 (1065)
Q Consensus 492 ~ae~L~~AkrP------vIlvG~g~~~-~~a~~~L~~LAe~lg~PV~tt~~g--kg~v~~~hpl~lg~~~~~al~~aDlV 562 (1065)
+-+.|.+.+|| +++.|+...- .+..+.|-.||+++|+-|=++-.+ .|.+|. .+-+|.... +-.++|-
T Consensus 203 v~~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvpN--dlQiGQTGK--IVAPeLY 278 (336)
T KOG3954|consen 203 VSQELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVPN--DLQIGQTGK--IVAPELY 278 (336)
T ss_pred HHhhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCCC--ccccccccc--eeccceE
Confidence 34556666666 6677765443 355679999999999999877553 244443 344554333 2368899
Q ss_pred EEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 563 LLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 563 I~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
|.+|-+=.-..+.|. +..+.++-|+.||.. --+...|..+++|.-..+-+|.++|+
T Consensus 279 iAvGisGAIQHLAGm----KDSKvIvAINkDpdA-PIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 279 IAVGISGAIQHLAGM----KDSKVIVAINKDPDA-PIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred EEEeccHHHHHhhcC----ccceEEEEecCCCCC-CceeeecccchhhHHHHhHHHHHhcc
Confidence 999976433333332 334556778888753 23456799999999999999998876
|
|
| >PRK05333 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=1.5 Score=49.41 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=49.8
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+.++|++|++|+++.-.....+.... ..+.++|.||.++...+.. .++.|.+|+.++|..|.+.+.
T Consensus 209 ~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~--~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 209 RAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL--LTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc--eeEEEeCCHHHHHHHHHHHhC
Confidence 34567899999999998754333332111 2345888899988766653 488999999999999988775
|
|
| >cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
Probab=82.05 E-value=1.8 Score=47.03 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=45.7
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHH
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQL 618 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L 618 (1065)
.+.++++|++|.+|+++.-......... ..++.+++.|+.++...+ ...++.|.+|+.++|.+|
T Consensus 159 ~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 159 VEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS--PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC--CcCCEEEECCHHHHHHHh
Confidence 3456799999999987653322222211 135678999999987766 446889999999999876
|
coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity. |
| >KOG0225|consensus | Back alignment and domain information |
|---|
Probab=81.22 E-value=8.9 Score=43.38 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=22.3
Q ss_pred EEeccccccC---cchhhHHHhhccCccccCCCEEEEEEcCC
Q psy14416 931 IVNNNGIYGG---FDETTYASIVESGEVTTVLPVILVIVNNN 969 (1065)
Q Consensus 931 ~~~gd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~nn~ 969 (1065)
.+-|||+-.| |-..+.+.+ ++||++.|.=||.
T Consensus 192 alYGDGAaNQGQ~fEa~NMA~L-------W~LP~IFvCENN~ 226 (394)
T KOG0225|consen 192 ALYGDGAANQGQVFEAFNMAAL-------WKLPVIFVCENNH 226 (394)
T ss_pred EEeccccccchhHHHHhhHHHH-------hCCCEEEEEccCC
Confidence 7889998731 223344544 7999998888883
|
|
| >COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.68 E-value=6 Score=45.14 Aligned_cols=132 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~~ 551 (1065)
.++++++|+.|++.+|+-|.|..-.++...++++++++ |++|= --|.+ |..|.+-.-.+. ..
T Consensus 298 aedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPVA-GRmPGHMNVLLAEA~VpYd~v~emdd 376 (463)
T COG1282 298 AEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPVA-GRMPGHMNVLLAEAKVPYDIVLEMDE 376 (463)
T ss_pred HHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeecccc-cCCCcchhhhhhhccCCHHHHhhHHh
Confidence 35678899999999999999887777777777777766 55553 12222 333332222222 12
Q ss_pred HHhhhcCCCEEEEeCCcccc--------ccccCCCc-cccCCCeEEEecCCh----hhccc---ccccceEEEcCHHHHH
Q psy14416 552 RTHALQNADLVLLLGARLNW--------ILHFGRAP-RFKSNVKIIQVDLNA----EELHN---SVQAAVAIQSDVRLTV 615 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~--------~~~~g~~~-~~~~~~~iI~Vd~d~----~~~~~---~~~~~~~I~~D~~~~L 615 (1065)
-+..+.++|+++++|+.-.- ...+|.+- ...+.+.++.+...- .-++. +..-+.-+.+|++...
T Consensus 377 IN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiLeV~KAk~viv~KRsM~sGyAGv~N~LFy~d~T~MlFGDAKk~V 456 (463)
T COG1282 377 INDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVLEVWKAKTVIVFKRSMNSGYAGVQNPLFYKDNTMMLFGDAKKSV 456 (463)
T ss_pred hcchhccccEEEEEccCCCCChhhccCCCCcCCCceeeeeccceEEEEeccccccccccCCcceeccCcEEEeccHHHHH
Confidence 34567789999999976321 11222211 011223334333211 11111 1234666889999998
Q ss_pred HHHHHh
Q psy14416 616 QQLKQM 621 (1065)
Q Consensus 616 ~~L~~~ 621 (1065)
+++.+.
T Consensus 457 ~~i~k~ 462 (463)
T COG1282 457 DEILKA 462 (463)
T ss_pred HHHHhc
Confidence 887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1065 | ||||
| 2q27_A | 564 | Crystal Structure Of Oxalyl-Coa Decarboxylase From | 4e-57 | ||
| 2q27_A | 564 | Crystal Structure Of Oxalyl-Coa Decarboxylase From | 6e-04 | ||
| 2c31_A | 568 | Crystal Structure Of Oxalyl-Coa Decarboxylase In Co | 4e-57 | ||
| 1ybh_A | 590 | Crystal Structure Of Arabidopsis Thaliana Acetohydr | 3e-30 | ||
| 3e9y_A | 584 | Arabidopsis Thaliana Acetohydroxyacid Synthase In C | 3e-30 | ||
| 1n0h_A | 677 | Crystal Structure Of Yeast Acetohydroxyacid Synthas | 7e-21 | ||
| 1jsc_A | 630 | Crystal Structure Of The Catalytic Subunit Of Yeast | 8e-21 | ||
| 1pox_A | 585 | The Refined Structures Of A Stabilized Mutant And O | 9e-21 | ||
| 1pow_A | 585 | The Refined Structures Of A Stabilized Mutant And O | 2e-20 | ||
| 4fee_A | 603 | High-Resolution Structure Of Pyruvate Oxidase In Co | 2e-20 | ||
| 2ez4_A | 603 | Pyruvate Oxidase Variant F479w Length = 603 | 2e-20 | ||
| 1y9d_A | 603 | Pyruvate Oxidase Variant V265a From Lactobacillus P | 2e-20 | ||
| 3iaf_A | 570 | Structure Of Benzaldehyde Lyase A28s Mutant With Mo | 5e-19 | ||
| 3d7k_A | 570 | Crystal Structure Of Benzaldehyde Lyase In Complex | 5e-19 | ||
| 2ag0_A | 563 | Crystal Structure Of Benzaldehyde Lyase (Bal)- Nati | 6e-19 | ||
| 2uz1_B | 563 | 1.65 Angstrom Structure Of Benzaldehyde Lyase Compl | 6e-19 | ||
| 3iae_A | 570 | Structure Of Benzaldehyde Lyase A28s Mutant With Be | 7e-19 | ||
| 2ag1_A | 563 | Crystal Structure Of Benzaldehyde Lyase (Bal)- Seme | 1e-17 | ||
| 1ozg_A | 566 | The Crystal Structure Of Klebsiella Pneumoniae Acet | 8e-15 | ||
| 2pan_A | 616 | Crystal Structure Of E. Coli Glyoxylate Carboligase | 5e-14 | ||
| 3eya_A | 549 | Structural Basis For Membrane Binding And Catalytic | 6e-13 | ||
| 3ey9_A | 572 | Structural Basis For Membrane Binding And Catalytic | 7e-13 | ||
| 1v5e_A | 590 | Crystal Structure Of Pyruvate Oxidase Containing Fa | 5e-12 | ||
| 1v5f_A | 589 | Crystal Structure Of Pyruvate Oxidase Complexed Wit | 2e-11 | ||
| 2pgn_A | 589 | The Crystal Structure Of Fad And Thdp-Dependent Cyc | 2e-11 | ||
| 1upb_A | 573 | Carboxyethylarginine Synthase From Streptomyces Cla | 2e-08 | ||
| 1upa_A | 573 | Carboxyethylarginine Synthase From Streptomyces Cla | 6e-08 | ||
| 2vjy_A | 563 | Pyruvate Decarboxylase From Kluyveromyces Lactis In | 4e-07 | ||
| 1pyd_A | 556 | Catalytic Centers In The Thiamin Diphosphate Depend | 1e-04 | ||
| 1po7_A | 528 | High Resolution Structure Of E28a Mutant Benzoylfor | 1e-04 | ||
| 2vbf_A | 570 | The Holostructure Of The Branched-Chain Keto Acid D | 1e-04 | ||
| 1pvd_A | 555 | Crystal Structure Of The Thiamin Diphosphate Depend | 1e-04 | ||
| 1qpb_A | 563 | Pyruvate Decarboyxlase From Yeast (Form B) Complexe | 2e-04 | ||
| 2w93_A | 563 | Crystal Structure Of The Saccharomyces Cerevisiae P | 2e-04 | ||
| 2fwn_A | 528 | Phosphorylation Of An Active Site Serine In A Thdp- | 2e-04 | ||
| 2fn3_A | 528 | High Resolution Structure Of S26a Mutant Of Benzoyl | 2e-04 | ||
| 1pi3_A | 528 | E28q Mutant Benzoylformate Decarboxylase From Pseud | 3e-04 | ||
| 1yno_A | 527 | High Resolution Structure Of Benzoylformate Decarbo | 3e-04 | ||
| 3fzn_A | 534 | Intermediate Analogue In Benzoylformate Decarboxyla | 3e-04 | ||
| 1mcz_A | 528 | Benzoylformate Decarboxylase From Pseudomonas Putid | 3e-04 | ||
| 2v3w_A | 528 | Crystal Structure Of The Benzoylformate Decarboxyla | 3e-04 | ||
| 3f6b_X | 525 | Crystal Structure Of Benzoylformate Decarboxylase I | 3e-04 | ||
| 2vk1_A | 563 | Crystal Structure Of The Saccharomyces Cerevisiae P | 7e-04 | ||
| 2vk8_A | 563 | Crystal Structure Of The Saccharomyces Cerevisiae P | 8e-04 |
| >pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From Escherichia Coli Length = 564 | Back alignment and structure |
|
| >pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From Escherichia Coli Length = 564 | Back alignment and structure |
|
| >pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex With The Cofactor Derivative Thiamin-2-Thiazolone Diphosphate And Adenosine Diphosphate Length = 568 | Back alignment and structure |
|
| >pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide Chlorimuron Ethyl Length = 590 | Back alignment and structure |
|
| >pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex With Monosulfuron Length = 584 | Back alignment and structure |
|
| >pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl Length = 677 | Back alignment and structure |
|
| >pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast Acetohydroxyacid Synthase: A Target For Herbicidal Inhibitors Length = 630 | Back alignment and structure |
|
| >pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum Length = 585 | Back alignment and structure |
|
| >pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum Length = 585 | Back alignment and structure |
|
| >pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex With Reaction Intermediate 2-Hydroxyethyl-Thiamin Diphosphate Carbanion-Enamine, Crystal B Length = 603 | Back alignment and structure |
|
| >pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w Length = 603 | Back alignment and structure |
|
| >pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus Plantarum Length = 603 | Back alignment and structure |
|
| >pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With Monomethyl Benzoylphosphonate Length = 570 | Back alignment and structure |
|
| >pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With The Inhibitor Mbp Length = 570 | Back alignment and structure |
|
| >pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native Length = 563 | Back alignment and structure |
|
| >pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed With 2-Methyl-2,4-Pentanediol Length = 563 | Back alignment and structure |
|
| >pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With Benzoylphosphonate Length = 570 | Back alignment and structure |
|
| >pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet Length = 563 | Back alignment and structure |
|
| >pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae Acetolactate Synthase With Enzyme-bound Cofactor And With An Unusual Intermediate Length = 566 | Back alignment and structure |
|
| >pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase Length = 616 | Back alignment and structure |
|
| >pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic Activation Of The Peripheral Membrane Enzyme Pyruvate Oxidase From Escherichia Coli Length = 549 | Back alignment and structure |
|
| >pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic Activation Of The Peripheral Membrane Enzyme Pyruvate Oxidase From Escherichia Coli Length = 572 | Back alignment and structure |
|
| >pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From Aerococcus Viridans Length = 590 | Back alignment and structure |
|
| >pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad And Tpp, From Aerococcus Viridans Length = 589 | Back alignment and structure |
|
| >pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent Cyclohexane-1,2-Dione Hydrolase In Complex With Cyclohexane-1,2-Dione Length = 589 | Back alignment and structure |
|
| >pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces Clavuligerus Length = 573 | Back alignment and structure |
|
| >pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces Clavuligerus (semet Structure) Length = 573 | Back alignment and structure |
|
| >pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In Complex With The Substrate Analogue Methyl Acetylphosphonate Length = 563 | Back alignment and structure |
|
| >pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent Enzyme Pyruvate Decarboxylase At 2.4 Angstroms Resolution Length = 556 | Back alignment and structure |
|
| >pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Length = 528 | Back alignment and structure |
|
| >pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid Decarboxylase (Kdca) From Lactococcus Lactis Length = 570 | Back alignment and structure |
|
| >pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent Enzyme Pyruvate Decarboxylase From The Yeast Saccharomyces Cerevisiae At 2.3 Angstroms Resolution Length = 555 | Back alignment and structure |
|
| >pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With Pyruvamide Length = 563 | Back alignment and structure |
|
| >pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant E477q In Complex With The Surrogate Pyruvamide Length = 563 | Back alignment and structure |
|
| >pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp- Dependent Enzyme By Phosphonate Inactivation Length = 528 | Back alignment and structure |
|
| >pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With Thiamine Thiazolone Diphosphate Length = 528 | Back alignment and structure |
|
| >pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Length = 528 | Back alignment and structure |
|
| >pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With Thiamine Thiazolone Diphosphate Length = 527 | Back alignment and structure |
|
| >pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase Length = 534 | Back alignment and structure |
|
| >pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With An Inhibitor, R-Mandelate Length = 528 | Back alignment and structure |
|
| >pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase Variant L461a From Pseudomonas Putida Length = 528 | Back alignment and structure |
|
| >pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In Complex With The Pyridyl Inhibitor Paa Length = 525 | Back alignment and structure |
|
| >pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant D28a In Complex With Its Substrate Length = 563 | Back alignment and structure |
|
| >pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant E477q In Complex With Its Substrate Length = 563 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Length = 568 | Back alignment and structure |
|---|
Score = 311 bits (799), Expect = 1e-94
Identities = 129/396 (32%), Positives = 201/396 (50%), Gaps = 40/396 (10%)
Query: 259 MSEDYD-EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAAC 317
MS D + E V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A
Sbjct: 1 MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 318 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--F 375
YAA GY+ KPGVCL VS PG L+ +A+A NC+PM+++ GS ++ + +
Sbjct: 61 YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
+E Q+ +ARP+CK S R +I I + +AVR + G+PG Y+D PA L Q I+
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVE 180
Query: 436 ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
+ +P P P P + +A+ L
Sbjct: 181 E--ANKLLFKPIDPAPAQI-----------------------------PAEDAIARAADL 209
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHA 555
I AK P++++GKGAAY+Q + E+ + V +PFLP M KG++PD HP +A R A
Sbjct: 210 IKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAFA 269
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNV-KIIQVDLNAEELHNSVQAAVAIQSDVRLT 614
L D+ +L+GARLNW++ G+ + + K +Q+D+ A E+ ++ A + D++
Sbjct: 270 LAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSA 329
Query: 615 VQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 650
V L++ L + A + W LK K N+
Sbjct: 330 VSLLRKALKGAPK-----ADAEWTGALKAKVDGNKA 360
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Length = 568 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 1e-42
Identities = 63/162 (38%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 1 MSEDYD-EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAAC 59
MS D + E V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A
Sbjct: 1 MSNDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAG 60
Query: 60 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--F 117
YAA GY+ KPGVCL VS PG L+ +A+A NC+PM+++ GS ++ + +
Sbjct: 61 YAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY 120
Query: 118 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+E Q+ +ARP+CK S R +I I + +AVR + G+PG
Sbjct: 121 EEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPG 162
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Length = 568 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-25
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 5/83 (6%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
PR RLD+GT+G MG+G+G+ +AAA GK V+ V+GDSAFGFSGMELET+ RY
Sbjct: 414 LKPRKRLDSGTWGVMGIGMGYCVAAAA-----VTGKPVIAVEGDSAFGFSGMELETICRY 468
Query: 226 RLPVILVIVNNNGIYGGFDEATY 248
LPV ++I+NN GIY G +
Sbjct: 469 NLPVTVIIMNNGGIYKGNEADPQ 491
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Length = 568 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 954 EVTTV----LPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009
E+ T+ LPV ++I+NN GIY G + + RY+ MM
Sbjct: 461 ELETICRYNLPVTVIIMNNGGIYKGNEADPQPG----------VISCTRLTRGRYDMMME 510
Query: 1010 VFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053
FG GY+ T ++K A+++ + + +P LIN +I+P A +
Sbjct: 511 AFGGKGYVANTPAELKAALEEAVA-SGKPCLINAMIDPDAGVES 553
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Length = 564 | Back alignment and structure |
|---|
Score = 271 bits (696), Expect = 4e-80
Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 39/386 (10%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACY 318
MS+ + +I +ALK I+ ++G+VGIPV ++A Q EGI YIG R+EQ+A Y
Sbjct: 1 MSDQL-QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGY 59
Query: 319 AAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ 376
AA A G+LT+KPG+CL VS PG L+ +ANA +N +PM++I GS + + ++
Sbjct: 60 AAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYE 119
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
E Q+ A+PY K + R +G + +A+R+S G+PG YLD PAN+LA +
Sbjct: 120 ELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATM---- 175
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
E I +++ S P L P + A L+
Sbjct: 176 --------EKDEALTTIVKVENPS------------------PALL-PCPKSVTSAISLL 208
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHAL 556
+A+ PL+I+GKGAAYSQA+ +L F+ S +PFLP M KG++ D HP +AAR+ AL
Sbjct: 209 AKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFAL 268
Query: 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQ 616
NAD+V+L+GARLNW+L + ++ + IQ+D+ +E+ ++ AV + D+ ++Q
Sbjct: 269 ANADVVMLVGARLNWLLA-HGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQ 327
Query: 617 QLKQMLSHTQRNWSFSATSPWWQELK 642
+ L + +F+ W L
Sbjct: 328 GMLAEL----KQNTFTTPLVWRDILN 349
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Length = 564 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 1e-36
Identities = 65/161 (40%), Positives = 99/161 (61%), Gaps = 3/161 (1%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACY 60
MS+ + +I +ALK I+ ++G+VGIPV ++A Q EGI YIG R+EQ+A Y
Sbjct: 1 MSDQL-QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGY 59
Query: 61 AAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ 118
AA A G+LT+KPG+CL VS PG L+ +ANA +N +PM++I GS + + ++
Sbjct: 60 AAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYE 119
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
E Q+ A+PY K + R +G + +A+R+S G+PG
Sbjct: 120 ELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG 160
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Length = 564 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-23
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR RLD GT+G MG+G+G+A+ A++ G VV ++GDSAFGFSGME+ET+ RY L
Sbjct: 411 PRRRLDCGTWGVMGIGMGYAIGASV-----TSGSPVVAIEGDSAFGFSGMEIETICRYNL 465
Query: 228 PVILVIVNNNGIY 240
PV +VI NN GIY
Sbjct: 466 PVTIVIFNNGGIY 478
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Length = 564 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 4e-08
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 23/111 (20%)
Query: 954 EVTTV----LPVILVIVNNNGIYGG-----FDEATYASIVESGEVTTVSPPTSLGPSLRY 1004
E+ T+ LPV +VI NN GIY G + PT L RY
Sbjct: 456 EIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPS-------------PTDLLHHARY 502
Query: 1005 EKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQN 1055
+K+M F GY TT +++ A+ + + +P++IN++I+P+A + +
Sbjct: 503 DKLMDAFRGVGYNVTTTDELRHALTTGI-QSRKPTIINVVIDPAAGTESGH 552
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Length = 603 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 6e-52
Identities = 90/394 (22%), Positives = 166/394 (42%), Gaps = 52/394 (13%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQA 315
M + + A + + L+ G+++++GI G +++ A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMD-ALSAERDRIHYIQVRHEEV 61
Query: 316 ACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF 375
AA A LT K GVC +GPG H G+ +A+ + P+L + G + F
Sbjct: 62 GAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTF 121
Query: 376 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQS 435
QE + + Y+ N + +++A+R + + GV+ + P +L Q+I
Sbjct: 122 QEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQI--- 177
Query: 436 ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495
P W A Q P LP P + + + ++
Sbjct: 178 ----------PAEDWYASANSYQT-------------------PLLPEPDVQAVTRLTQT 208
Query: 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV------- 548
+L A+ PL+ G GA +A EL + +P + T KG+V D +P +
Sbjct: 209 LLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVA 266
Query: 549 SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQ 608
AL AD+VL +G + +A FK+ +Q+D++ +L + +A+
Sbjct: 267 QKPANEALAQADVVLFVGNNYPFAE-VSKA--FKNTRYFLQIDIDPAKLGKRHKTDIAVL 323
Query: 609 SDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+D + T L +L+ S +K
Sbjct: 324 ADAQKT---LAAILAQVSERESTPWWQANLANVK 354
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Length = 603 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 3e-22
Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 4/160 (2%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQA 57
M + + A + + L+ G+++++GI G +++ A++ +++ IHYI +R+E+
Sbjct: 3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMD-ALSAERDRIHYIQVRHEEV 61
Query: 58 ACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF 117
AA A LT K GVC +GPG H G+ +A+ + P+L + G + F
Sbjct: 62 GAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTF 121
Query: 118 QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157
QE + + Y+ N + +++A+R + +
Sbjct: 122 QEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ 161
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Length = 603 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-11
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM---ELETL 222
+ + F TMGVG+ A+AA L P ++V + GD M +L T
Sbjct: 408 TPSNRHITSNLFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGAS---MTMQDLATQ 460
Query: 223 VRYRLPVILVIVNNN 237
V+Y LPVI V+ N
Sbjct: 461 VQYHLPVINVVFTNC 475
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Length = 590 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 3e-51
Identities = 67/389 (17%), Positives = 131/389 (33%), Gaps = 52/389 (13%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 321
D +++ + + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 322 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 381
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
+ Y+ R + + V++A R++ + GV+ L+ P + I+ +
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSA 179
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
L P P ++ A L+ +K
Sbjct: 180 NSLRKYAP--------------------------------IAPAAQDIDAAVELLNNSKR 207
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTH 554
P++ G G + P + T
Sbjct: 208 PVIYAGIGTM--GHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANE 265
Query: 555 ALQNADLVLLLGARLNWILHFGR-APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
+ AD VL G+ F F++ IQ+D++ L A VAI D L
Sbjct: 266 TILEADTVLFAGSNFP----FSEVEGTFRNVDNFIQIDIDPAMLGKRHHADVAILGDAAL 321
Query: 614 TVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ ++L+ + + + +
Sbjct: 322 A---IDEILNKVDAVEESAWWTANLKNIA 347
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Length = 590 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 63
D +++ + + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 64 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 123
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157
+ Y+ R + + V++A R++ +
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR 154
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Length = 590 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 4e-12
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
+ F TMG+ + L A P ++V + GD AF + ++ T VRY
Sbjct: 401 TPKNMWRTSPLFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMTYPDVVTNVRY 456
Query: 226 RLPVILVIVNNN 237
+PVI V+ +N
Sbjct: 457 NMPVINVVFSNT 468
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Length = 549 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 4e-49
Identities = 80/387 (20%), Positives = 151/387 (39%), Gaps = 58/387 (14%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQA 322
+ + IA+ L+ G++ ++G+ G + + ++ + I ++ R+E+ A +AA A
Sbjct: 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSD-SLN-RMGTIEWMSTRHEEVAAFAAGA 59
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
L+ + VC GPG LH G+ + N P+L I G G FQE E
Sbjct: 60 EAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQE 119
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
L R Y + I Q + A+R + + GVS + P ++ + + A +
Sbjct: 120 LFRECSHYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYH 178
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
+P + P EL++ ++L+ +
Sbjct: 179 APQPVVT----------------------------------PEEEELRKLAQLLRYSSNI 204
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAARTHA 555
++ G G A A EL+ F P + GK V +P V ++ H
Sbjct: 205 ALMCGSGCA--GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHT 262
Query: 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTV 615
+ NAD ++LLG + + + + KIIQ+D+N + + +A+ D++ T
Sbjct: 263 MMNADTLVLLGTQFPYRAFY--PT----DAKIIQIDINPASIGAHSKVDMALVGDIKST- 315
Query: 616 QQLKQMLSHTQRNWSFSATSPWWQELK 642
L+ +L + ++ +
Sbjct: 316 --LRALLPLVEEKADRKFLDKALEDYR 340
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Length = 549 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 3e-20
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQA 64
+ + IA+ L+ G++ ++G+ G + + ++ + I ++ R+E+ A +AA A
Sbjct: 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSD-SLN-RMGTIEWMSTRHEEVAAFAAGA 59
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
L+ + VC GPG LH G+ + N P+L I G G FQE E
Sbjct: 60 EAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQE 119
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 157
L R Y + I Q + A+R + +
Sbjct: 120 LFRECSHYCELVSSPEQIPQVLAIAMRKAVLNR 152
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Length = 549 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 4e-11
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRY 225
N R L + G+M + AL A P ++VV + GD F + ++V+
Sbjct: 394 NGKRRLLGSFNHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSMLMGDFLSVVQM 449
Query: 226 RLPVILVIVNNN 237
+LPV +V+ NN+
Sbjct: 450 KLPVKIVVFNNS 461
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Length = 565 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 3e-46
Identities = 63/383 (16%), Positives = 124/383 (32%), Gaps = 60/383 (15%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
+ + + +ALK +G + +FGI G + + + + + +E A +AA
Sbjct: 19 SHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVA-EETQILPLHTLSHEPAVGFAAD- 76
Query: 323 IGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG--GFQEC 378
+ GV V G G + +A A P++VI G+ G +
Sbjct: 77 -AAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 135
Query: 379 ----PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQ 434
Q ++ + AR + + + + + + YL+ P N++ +
Sbjct: 136 RTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAAR-AQSRPVYLEIPRNMVNAEV-- 192
Query: 435 SALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494
EP P A +
Sbjct: 193 ----------EPVGDDPA------------------------WPVDRD-ALAACADEVLA 217
Query: 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV------ 548
+ A +P++++ E ++ +P + T MG+G++ DA +
Sbjct: 218 AMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGV 277
Query: 549 --SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
A T ++ +D + LLGA L+ F + R K I A L A +
Sbjct: 278 AGDAEITRLVEESDGLFLLGAILSDTN-FAVSQRKIDLRKTIHAFDRAVTLGYHTYADIP 336
Query: 607 IQSDVRLTVQQLKQMLSHTQRNW 629
+ V +++L T+
Sbjct: 337 LAGLVDALLERLPPSDRTTRGKE 359
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Length = 565 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 7e-18
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 14/163 (8%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
+ + + +ALK +G + +FGI G + + + + + +E A +AA
Sbjct: 19 SHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVA-EETQILPLHTLSHEPAVGFAAD- 76
Query: 65 IGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG--GFQEC 120
+ GV V G G + +A A P++VI G+ G +
Sbjct: 77 -AAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 135
Query: 121 ----PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
Q ++ + AR + + + + + +
Sbjct: 136 RTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAAR-AQSR 177
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Length = 565 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-12
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYR 226
+ + G + MG G+ + A GKR++ V GD AF +G EL R
Sbjct: 411 IDAGLMAPGYYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQMTGWELGNCRRLG 466
Query: 227 LPVILVIVNNNG 238
+ I+++ NN
Sbjct: 467 IDPIVILFNNAS 478
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Length = 565 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 959 LPVILVIVNNNGIYGGFDEATYASIV----ESGEVTTVSPPTSLGPSLRYEKMMAVFGHD 1014
+ I+++ NN + ++ + R+ M A G D
Sbjct: 467 IDPIVILFNNAS-WE---------MLRTFQPESAFNDLDDW-------RFADMAAGMGGD 509
Query: 1015 GYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049
G T ++K A+ K T R LI +I
Sbjct: 510 GVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGV 544
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Length = 573 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 3e-45
Identities = 81/407 (19%), Positives = 141/407 (34%), Gaps = 60/407 (14%)
Query: 257 SNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 316
S +S + +A + L+ G+ VFG+VG + + EGI ++ R+E A
Sbjct: 2 SRVSTAPSGKPTAAHALLSRLRDHGVGKVFGVVGREAASILFD-EVEGIDFVLTRHEFTA 60
Query: 317 CYAAQAIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG- 373
AA +T +P C GPG+ + G+A + ++ P++ + H+
Sbjct: 61 GVAAD--VLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSES-HDIFPN 117
Query: 374 -GFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
Q V + P KY+ H I V+ AV + G S++ P +LL
Sbjct: 118 DTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSE 177
Query: 433 NQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQA 492
VP P P P +A+ W QA
Sbjct: 178 GIDTTVPNPPANTPAKPVGVVAD--------------------------GWQK--AADQA 209
Query: 493 SRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAAR 552
+ L+ EAK P++++G A S A + + N+P + T + KGV+P H A
Sbjct: 210 AALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVT 269
Query: 553 TH------------ALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAE 595
+ DLVL +G + + K +++
Sbjct: 270 GYMDGILNFPALQTMFAPVDLVLTVGYD------YAEDLRPSMWQKGIEKKTVRISPTVN 323
Query: 596 ELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ + V + +DV V+ + + P +
Sbjct: 324 PIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQR-HDIEPLRARIA 369
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Length = 573 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-16
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
+ +A + L+ G+ VFG+VG + + EGI ++ R+E A AA
Sbjct: 10 GKPTAAHALLSRLRDHGVGKVFGVVGREAASILFD-EVEGIDFVLTRHEFTAGVAAD--V 66
Query: 67 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIG--GFQECPQ 122
+T +P C GPG+ + G+A + ++ P++ + H+ Q
Sbjct: 67 LARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSES-HDIFPNDTHQCLDS 125
Query: 123 VELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
V + P KY+ H I V+ AV + G
Sbjct: 126 VAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVG 162
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Length = 573 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 7e-11
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P L + + G G+ A+ A + P + + GD F + +LET+ R L
Sbjct: 426 PFGFLTSAGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSNSSDLETIARLNL 481
Query: 228 PVILVIVNNN 237
P++ V+VNN+
Sbjct: 482 PIVTVVVNND 491
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Length = 566 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 3e-44
Identities = 78/397 (19%), Positives = 147/397 (37%), Gaps = 57/397 (14%)
Query: 259 MSEDYD--EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 316
M + Y + ++ L+ QG+ VFGI G + ++ + I I +R+E A
Sbjct: 1 MDKQYPVRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANA 60
Query: 317 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 376
+ A A+G +T K GV LV SGPG + GMA A P++ +GG+ + + Q
Sbjct: 61 AFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQ 120
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
V + P KY+ + + V A R + G+PG +++ P +
Sbjct: 121 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD---------- 170
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
+++ ++ P + + Q ++LI
Sbjct: 171 --------------------------VVDGPVSGKVLPASGAPQMGAAPDDAIDQVAKLI 204
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAH-PNCV------- 548
+AK P+ ++G A+ + L + + ++P T G V +
Sbjct: 205 AQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFN 264
Query: 549 SAARTHALQNADLVLLLGARLNWILHFG-RAP--RFKSNVKIIQVDLNAEELHNSVQAAV 605
+ A LQ ADLV+ +G P N ++ +D+ + V
Sbjct: 265 NQAGDRLLQLADLVICIGYS------PVEYEPAMWNSGNATLVHIDVLPAYEERNYTPDV 318
Query: 606 AIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ D+ T+ +L Q + R + ++ +
Sbjct: 319 ELVGDIAGTLNKLAQNID--HRLVLSPQAAEILRDRQ 353
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Length = 566 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 3e-20
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 1 MSEDYD--EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAA 58
M + Y + ++ L+ QG+ VFGI G + ++ + I I +R+E A
Sbjct: 1 MDKQYPVRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANA 60
Query: 59 CYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ 118
+ A A+G +T K GV LV SGPG + GMA A P++ +GG+ + + Q
Sbjct: 61 AFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQ 120
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
V + P KY+ + + V A R + G+PG
Sbjct: 121 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPG 161
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Length = 566 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-14
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
R + + TMGV L +A+ A L P ++VV V GD F S MELET VR +
Sbjct: 410 ARQVMISNGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQSSMELETAVRLKA 465
Query: 228 PVILVIVNNN 237
V+ +I +N
Sbjct: 466 NVLHLIWVDN 475
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Length = 563 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 1e-43
Identities = 91/393 (23%), Positives = 163/393 (41%), Gaps = 59/393 (15%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+ G
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAE--G 59
Query: 325 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQV 381
Y K GV LV +G G + +ANA ++ P+L + GS A + Q QV
Sbjct: 60 YARAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQV 119
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
+A P K++ R I + V +A+R + G LD P ++L +I
Sbjct: 120 AMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQI--------- 170
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
I +L ++ P A+L QA L+ +A+
Sbjct: 171 -----DEDSVIIPDLVLSA------------------HGAR-PDPADLDQALALLRKAER 206
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV------SAARTHA 555
P++++G A+ + +T L +FV + +P G ++ + A
Sbjct: 207 PVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKA 266
Query: 556 LQNADLVLLLGARLNWILHF-----GRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQS 609
DLVL+LGAR F + + + ++IQVD +A EL A+ I +
Sbjct: 267 DAAPDLVLMLGAR------FGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVA 320
Query: 610 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
DV T ++ + T ++ ++ W ++
Sbjct: 321 DVGGT---IEALAQATAQDAAWPDRGDWCAKVT 350
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Length = 563 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 5e-16
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 5/156 (3%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
++ +++ + L G+E++FG+ G + + AC + I R+E AA +AA+ G
Sbjct: 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAE--G 59
Query: 67 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQV 123
Y K GV LV +G G + +ANA ++ P+L + GS A + Q QV
Sbjct: 60 YARAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQV 119
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+A P K++ R I + V +A+R + G
Sbjct: 120 AMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRG 155
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Length = 563 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-11
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P L G G+MGVG G AL A + G+R + V GD + G+S E +TLVR +L
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLE--AGRRTILVTGDGSVGYSIGEFDTLVRKQL 466
Query: 228 PVILVIVNNN 237
P+I++I+NN
Sbjct: 467 PLIVIIMNNQ 476
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Length = 590 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 5e-17
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 63
D+ ++ +AL+ QG+E VF G +E+ A+ + I + R+EQ +AA+
Sbjct: 9 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALT-RSSSIRNVLPRHEQGGVFAAE 67
Query: 64 AIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 121
GY + KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P
Sbjct: 68 --GYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETP 125
Query: 122 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
VE+ R K++ ++ I + +E+A L+T G+PG
Sbjct: 126 IVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPG 163
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Length = 590 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 7e-10
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR L +G G MG GL A+ A++ P VV + GD +F + EL T+ L
Sbjct: 416 PRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMNVQELATIRVENL 471
Query: 228 PVILVIVNNN 237
PV ++++NN
Sbjct: 472 PVKVLLLNNQ 481
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Length = 589 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 7e-43
Identities = 72/398 (18%), Positives = 132/398 (33%), Gaps = 65/398 (16%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
+I +AL+ G E V G +G + A + G I E +
Sbjct: 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNG 61
Query: 323 IGYLTKKPGVCLVVSGPG--LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG---FQE 377
Y+ + G LLH M A+ P + IG + G Q+
Sbjct: 62 YNYVKDRSAAVGAWHCVGNLLLHA--AMQEARTGRIPAVHIGLNSDGRL--AGRSEAAQQ 117
Query: 378 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSAL 437
P P + + R + +G+ + +A R++ G +Y+D P +L A +I
Sbjct: 118 VPWQSF-TPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTADQI----- 171
Query: 438 VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497
+A L ++++A+ ++
Sbjct: 172 ---------DDKALVPRGATRAK------------------SVLH-APNEDVREAAAQLV 203
Query: 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SA 550
AK P+++ G G A S LL +P + T G GV P+ H +
Sbjct: 204 AAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWK 263
Query: 551 ARTHALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAV 605
+ + AD VL+LG+R + K + VD + L +
Sbjct: 264 SANDMMAAADFVLVLGSR------LSDWGIAQG-YITKMPKFVHVDTDPAVLGTFYFPLL 316
Query: 606 AIQSDVRLTVQQLKQMLSHTQ-RNWSFSATSPWWQELK 642
++ +D + ++QL ++L T +++
Sbjct: 317 SVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQAT 354
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Length = 589 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-16
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 12/160 (7%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
+I +AL+ G E V G +G + A + G I E +
Sbjct: 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNG 61
Query: 65 IGYLTKKPGVCLVVSGPG--LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGG---FQE 119
Y+ + G LLH M A+ P + IG + G Q+
Sbjct: 62 YNYVKDRSAAVGAWHCVGNLLLHA--AMQEARTGRIPAVHIGLNSDGRL--AGRSEAAQQ 117
Query: 120 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
P P + + R + +G+ + +A R++ G
Sbjct: 118 VPWQSF-TPIARSTQRVERLDKVGEAIHEAFRVAEGHPAG 156
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Length = 589 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 5e-11
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
PR + + G +G G AL A L P RV GD A + E V ++L
Sbjct: 414 PRRLVTSMAEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYHFNEFRVAVEHKL 469
Query: 228 PVILVIVNNN 237
PVI ++ N
Sbjct: 470 PVITMVFTNE 479
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Length = 616 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 2e-42
Identities = 79/396 (19%), Positives = 144/396 (36%), Gaps = 62/396 (15%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
++ A L+ +GI FG+ G + AM + GI +I R+ + A + A+
Sbjct: 25 AKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAM-RKHGGIRHILARHVEGASHMAE- 82
Query: 323 IGY--LTK-KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 379
GY T GVCL SGP + +A + P+L I G + FQ
Sbjct: 83 -GYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVD 141
Query: 380 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVP 439
+A+P K + L+ + +++A L G+PG +D P ++ I
Sbjct: 142 IEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEI------- 194
Query: 440 TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEA 499
L P ++++A ++++A
Sbjct: 195 -------EFDPDMYEPLPVYK---------------------PAASRMQIEKAVEMLIQA 226
Query: 500 KAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV--------SAA 551
+ P+++ G G + A L F ++P +PT MG G +PD H
Sbjct: 227 ERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRY 286
Query: 552 RTHALQNADLVLLLGARLNWILHF-----GRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
L +D+V +G R F G ++ KI+ +D+ ++ + +
Sbjct: 287 GNATLLASDMVFGIGNR------FANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLG 340
Query: 607 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
I SD + + L ++ Q+ W + +
Sbjct: 341 IVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQ 376
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Length = 616 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-16
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
++ A L+ +GI FG+ G + AM + GI +I R+ + A + A+
Sbjct: 25 AKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAM-RKHGGIRHILARHVEGASHMAE- 82
Query: 65 IGY--LTK-KPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP 121
GY T GVCL SGP + +A + P+L I G + FQ
Sbjct: 83 -GYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVD 141
Query: 122 QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
+A+P K + L+ + +++A L G+PG
Sbjct: 142 IEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPG 179
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Length = 616 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 3e-11
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
RH ++ G G +G + AL P + VV + GD F F EL ++ +
Sbjct: 432 DRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFLIEELAVGAQFNI 487
Query: 228 PVILVIVNNN 237
P I V+VNN
Sbjct: 488 PYIHVLVNNA 497
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Length = 677 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-37
Identities = 86/398 (21%), Positives = 162/398 (40%), Gaps = 55/398 (13%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 322
L+ Q+ + + Q ++ VFG G ++ + A+ + +++ ++EQ A + A+
Sbjct: 80 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIH-NSDKFNFVLPKHEQGAGHMAE- 137
Query: 323 IGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQ 380
GY + KPGV LV SGPG + MA+A + PM+V G G FQE
Sbjct: 138 -GYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV 196
Query: 381 VELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPT 440
V ++R K++ ++ + + +A ++T G+PG +D P ++ A +
Sbjct: 197 VGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAIL-------- 248
Query: 441 PKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500
P P L + L ++A + + +A+ LI AK
Sbjct: 249 ------RNPIPTKTTLPSNALNQLTSRAQDE------------FVMQSINKAADLINLAK 290
Query: 501 APLVIIGKGA-AYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------SAAR 552
P++ +G G ++ L + +P T G G P + A
Sbjct: 291 KPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATA 350
Query: 553 THALQNADLVLLLGARL-----NWILHFG---RAPRFKSNVKIIQVDLNAEELHNSVQAA 604
A+QNADL++ +GAR I F R + II +++ + ++ VQ
Sbjct: 351 NLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQ 410
Query: 605 VAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+A++ D + ++ + + S W+ ++
Sbjct: 411 IAVEGDATTNLGKMMSKIFPVK------ERSEWFAQIN 442
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Length = 677 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-16
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
L+ Q+ + + Q ++ VFG G ++ + A+ + +++ ++EQ A + A+
Sbjct: 80 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIH-NSDKFNFVLPKHEQGAGHMAE- 137
Query: 65 IGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQ 122
GY + KPGV LV SGPG + MA+A + PM+V G G FQE
Sbjct: 138 -GYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV 196
Query: 123 VELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
V ++R K++ ++ + + +A ++T G+PG
Sbjct: 197 VGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPG 233
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Length = 677 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P + +G GTMG GL A+ A + P V+ + GD++F + EL + V+
Sbjct: 503 PHTFITSGGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMTLTELSSAVQAGT 558
Query: 228 PVILVIVNNN 237
PV ++I+NN
Sbjct: 559 PVKILILNNE 568
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-37
Identities = 68/392 (17%), Positives = 128/392 (32%), Gaps = 64/392 (16%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIG 324
S + + L+ QGI+ VFG G + E YI E A G
Sbjct: 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF---PEDFRYILALQEACVVGIAD--G 56
Query: 325 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQV 381
Y ++KP + S G + G ++NA + P++V G + G+
Sbjct: 57 YAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAA 116
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
L RP K+S P + + + +A+ +++ G YL P + + + +
Sbjct: 117 NLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDAD----PQSH 172
Query: 442 KVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501
+ + + ++ +L + + A
Sbjct: 173 HLFDRH-----------------------------VSSSVR-LNDQDLDILVKALNSASN 202
Query: 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP-MGKGVVPDAHPNCV------SAARTH 554
P +++G + A + + P P + P HP AA +
Sbjct: 203 PAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQ 262
Query: 555 ALQNADLVLLLGARLNWILHFGR------APRFKSNVKIIQVDLNAEELHNSVQAAVAIQ 608
L+ D+VL++GA R K ++I V + E + AI
Sbjct: 263 LLEGHDVVLVIGAP------VFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPM-GDAIV 315
Query: 609 SDVRLTVQQLKQMLSHTQRNWSFSATSPWWQE 640
+D+ L ++ + R +A P +
Sbjct: 316 ADIGAMASALANLVEESSRQLPTAAPEPAKVD 347
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-15
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 10/156 (6%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIG 66
S + + L+ QGI+ VFG G + E YI E A G
Sbjct: 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF---PEDFRYILALQEACVVGIAD--G 56
Query: 67 Y--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-QECPQV 123
Y ++KP + S G + G ++NA + P++V G + G+
Sbjct: 57 YAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAA 116
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
L RP K+S P + + + +A+ +++ G
Sbjct: 117 NLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQG 152
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 3e-10
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
P G +G L A+ L P ++V+ V GD + +S L T +Y +
Sbjct: 392 PGSYYFCAA-GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYSISALWTAAQYNI 446
Query: 228 PVILVIVNNN 237
P I VI+NN
Sbjct: 447 PTIFVIMNNG 456
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Length = 570 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 6e-35
Identities = 69/416 (16%), Positives = 134/416 (32%), Gaps = 73/416 (17%)
Query: 245 EATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQ 302
++ + + S+M+ + + L GIE +FG+ G ++ + +
Sbjct: 7 HHHHSSGLVPRGSHMAS----MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQI-ISR 61
Query: 303 EGIHYIGMRNEQAACYAAQAIGYL-TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI 361
E + +IG NE A Y A GY TKK L G G L G+A + P++ I
Sbjct: 62 EDMKWIGNANELNASYMAD--GYARTKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEI 119
Query: 362 GGSCAQDHEGIGGFQEC--------PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 413
GS + G F +++ P + + +L
Sbjct: 120 VGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKE 179
Query: 414 GKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVII 473
KP Y++ P ++ +A P + +
Sbjct: 180 RKPV--YINLPVDV------AAAKAEKPALSLEKESSTTNTTEQVI-------------- 217
Query: 474 GKVLEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPT 533
L + + A+ P+VI G E + FV+ LP
Sbjct: 218 ---------------LSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTL 262
Query: 534 PMGKGVVPDAHPNCV--------SAARTHALQNADLVLLLGARLN-WILHFGRAPRFKSN 584
GK V ++ P+ + + + +++AD +L+LG +L G
Sbjct: 263 NFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSST--GAFTHHLDE 320
Query: 585 VKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQE 640
K+I ++++ + N V ++ + + + ++E
Sbjct: 321 NKMISLNIDEGIIFNKVVEDFDFRAV-------VSSLSELKGIEYEGQYIDKQYEE 369
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Length = 570 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-13
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQA 64
+ + L GIE +FG+ G ++ + +E + +IG NE A Y A
Sbjct: 23 SMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQI-ISREDMKWIGNANELNASYMAD- 80
Query: 65 IGYL-TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC--- 120
GY TKK L G G L G+A + P++ I GS + G F
Sbjct: 81 -GYARTKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLA 139
Query: 121 -----PQVELARPYCKYSA--RPPNIH 140
+++ P N
Sbjct: 140 DGDFKHFMKMHEPVTAARTLLTAENAT 166
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Length = 570 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-11
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
+G++G AL + + R + GD + + EL +R +L I I+
Sbjct: 422 PLWGSIGYTFPAALGSQIA----DKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFII 477
Query: 235 NNNGIYG 241
NN+G Y
Sbjct: 478 NNDG-YT 483
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Length = 570 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 29/100 (29%)
Query: 959 LPVILVIVNNNG------IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFG 1012
L I I+NN+G I+G +Y + Y K+ FG
Sbjct: 470 LNPICFIINNDGYTVEREIHGP--TQSY---------NDIPMW-------NYSKLPETFG 511
Query: 1013 HDGYLC-----TTVPQIKQAMKKCLQTTTRPSLINILINP 1047
T + MK+ R I +++
Sbjct: 512 ATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWIELVLEK 551
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Length = 566 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 7e-35
Identities = 48/380 (12%), Positives = 120/380 (31%), Gaps = 61/380 (16%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 325
+A+ L G+++ F + G + +++ + + + I NE ++A+ GY
Sbjct: 7 MYLAERLVQIGLKHHFAVAGDYNLVLLDQLLL--NKDMKQIYCCNELNCGFSAE--GYAR 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-------- 377
+V G + + A P+++I G+ + +G G
Sbjct: 63 SNGA-AAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDY 121
Query: 378 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSAL 437
Q+E+AR + + H ++ +R + + YLD N+ ++
Sbjct: 122 SYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPA-YLDIACNIASEPCV---- 176
Query: 438 VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497
P P + P LK A + L+
Sbjct: 177 RPGPVSSLLSEPEIDHTSLKAA-----------------------------VDATVALLE 207
Query: 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV--------S 549
++ +P++++G + A + + KG P+ H +
Sbjct: 208 KSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSN 267
Query: 550 AARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
++ +D +L + N + +I + + + +++
Sbjct: 268 PGVQELVETSDALLCIAPVFNDY-STVGWSAWPKGPNVILAEPDRVTVDGRAYDGFTLRA 326
Query: 610 DVRLTVQQLKQMLSHTQRNW 629
++ ++ + Q++
Sbjct: 327 FLQALAEKAPARPASAQKSS 346
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Length = 566 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-10
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 167 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVR 224
LPR +G +G + A A+ + ++ V + GD +F + E+ +VR
Sbjct: 396 LPRGARVELEMQWGHIGWSVPSAFGNAMG----SQDRQHVVMVGDGSFQLTAQEVAQMVR 451
Query: 225 YRLPVILVIVNNNGIYG 241
Y LPVI+ ++NN G Y
Sbjct: 452 YELPVIIFLINNRG-YV 467
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Length = 566 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 4e-10
Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 18/159 (11%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 67
+A+ L G+++ F + G + +++ + + + I NE ++A+ GY
Sbjct: 7 MYLAERLVQIGLKHHFAVAGDYNLVLLDQLLL--NKDMKQIYCCNELNCGFSAE--GYAR 62
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-------- 119
+V G + + A P+++I G+ + +G G
Sbjct: 63 SNGA-AAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDY 121
Query: 120 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158
Q+E+AR + + H ++ +R + +
Sbjct: 122 SYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERK 160
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Length = 568 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-33
Identities = 49/393 (12%), Positives = 120/393 (30%), Gaps = 71/393 (18%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 325
+A+ L G+++ F + G + +++ + + + + NE ++A+ GY
Sbjct: 7 TYLAERLVQIGLKHHFAVAGDYNLVLLDNLLL--NKNMEQVYCCNELNCGFSAE--GYAR 62
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG---SCAQDHEGIG--GFQEC-- 378
+V G L F + A P+++I G + + +
Sbjct: 63 AKGA-AAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDY 121
Query: 379 -PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSAL 437
Q+E+A+ + ++ ++ + K V YL+ N+ +
Sbjct: 122 HYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPV-YLEIACNIASMPCA---- 176
Query: 438 VPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLIL 497
P P A L A +++ + I
Sbjct: 177 APGPASALFNDEASDEASLNAA-----------------------------VEETLKFIA 207
Query: 498 EAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV--------S 549
V++G + AE + F ++ K P+ +P+ +
Sbjct: 208 NRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSY 267
Query: 550 AARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQS 609
++ AD V+ L N K++ + + ++ +V ++
Sbjct: 268 PGVEKTMKEADAVIALAPVFNDY-STTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKD 326
Query: 610 DVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ Q++ + + +++ L
Sbjct: 327 YLTRLAQKVSK----------KTGALDFFKSLN 349
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Length = 568 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-10
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 167 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVR 224
LP +G +G + A A+ AP +R + + GD +F + E+ +VR
Sbjct: 400 LPNGARVEYEMQWGHIGWSVPAAFGYAVG----APERRNILMVGDGSFQLTAQEVAQMVR 455
Query: 225 YRLPVILVIVNNNGIYG 241
+LPVI+ ++NN G Y
Sbjct: 456 LKLPVIIFLINNYG-YT 471
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Length = 568 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-09
Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 18/159 (11%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-- 67
+A+ L G+++ F + G + +++ + + + + NE ++A+ GY
Sbjct: 7 TYLAERLVQIGLKHHFAVAGDYNLVLLDNLLL--NKNMEQVYCCNELNCGFSAE--GYAR 62
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG---SCAQDHEGIG--GFQEC-- 120
+V G L F + A P+++I G + + +
Sbjct: 63 AKGA-AAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDY 121
Query: 121 -PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158
Q+E+A+ + ++ ++ + K
Sbjct: 122 HYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK 160
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Length = 563 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-33
Identities = 67/410 (16%), Positives = 140/410 (34%), Gaps = 67/410 (16%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQ 321
E++ + + + LK + VFG+ G + +++ EG+ + G NE A YAA
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYE--VEGMRWAGNANELNAAYAAD 59
Query: 322 AIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-- 377
GY + + G G L G+A + +L + G + +
Sbjct: 60 --GYARIKGM-SCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHT 116
Query: 378 ------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL-STFGKPGVSYLDFPANLLAQ 430
++ + +A +I +++ +R +P YL PANL+
Sbjct: 117 LGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPV--YLGLPANLVDL 174
Query: 431 RINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELK 490
+ L ++ +L K+ +
Sbjct: 175 NVPAKLL---QTPIDMSLKPNDAESEKEV-----------------------------ID 202
Query: 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-- 548
L +AK P+++ + + E ++ P TPMGKG + + HP
Sbjct: 203 TILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGV 262
Query: 549 ------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQ 602
A+++ADL+L +GA L+ + +K I++ + ++ N+
Sbjct: 263 YVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK-TKNIVEFHSDHMKIRNATF 321
Query: 603 AAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVK 652
V ++ ++ +L ++ + + P + +K
Sbjct: 322 PGVQMKFVLQ----KLLTTIADAAKGYK-PVAVPARTPANAAVPASTPLK 366
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Length = 563 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 4e-12
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 167 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVR 224
P + + +G++G G L AA P KRV+ GD + + E+ T++R
Sbjct: 400 FPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIR 459
Query: 225 YRLPVILVIVNNNG------IYGG 242
+ L L ++NN+G I+G
Sbjct: 460 WGLKPYLFVLNNDGYTIQKLIHGP 483
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Length = 563 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 19/167 (11%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQ 63
E++ + + + LK + VFG+ G + +++ EG+ + G NE A YAA
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYE--VEGMRWAGNANELNAAYAAD 59
Query: 64 AIGY--LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-- 119
GY + + G G L G+A + +L + G + +
Sbjct: 60 --GYARIKGM-SCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHT 116
Query: 120 ------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRL-STFGKPG 159
++ + +A +I +++ +R +P
Sbjct: 117 LGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPV 163
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Length = 552 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-32
Identities = 69/393 (17%), Positives = 117/393 (29%), Gaps = 70/393 (17%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-L 326
+ L G +++FG+ G + L I ++G NE A YAA GY
Sbjct: 9 DYLLDRLTDCGADHLFGVPGDYNLQF--LDHVIDSPDICWVGCANELNASYAAD--GYAR 64
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG---SCAQDHE-------GIGGFQ 376
K L G G L G+A + P+L I G + AQ G G F+
Sbjct: 65 CKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR 124
Query: 377 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSA 436
++ P A + + + +PG YL PA++ +
Sbjct: 125 H--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG--YLMLPADVAKKAAT--- 177
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
P L A LK A +
Sbjct: 178 --PPVNALTHKQAHADSACLKAF-----------------------------RDAAENKL 206
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCV-------- 548
+K ++ + L +V + MGKG+ +
Sbjct: 207 AMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSAS 266
Query: 549 SAARTHALQNADLVLLLGARLN-WILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAI 607
+ A A++ AD VL +G R + + + I+V +A + + + +
Sbjct: 267 TGAVKEAIEGADTVLCVGTRFTDTLT--AGFTHQLTPAQTIEVQPHAARVGDVWFTGIPM 324
Query: 608 QSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQE 640
+ V+ KQ H S++
Sbjct: 325 NQAIETLVELCKQ---HVHAGLMSSSSGAIPFP 354
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Length = 552 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-10
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 167 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVR 224
LP + +G++G L A A C P +RV+ + GD A + EL +++R
Sbjct: 395 LPADVNFIVQPLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLTIQELGSMLR 450
Query: 225 YRLPVILVIVNNNGIYG 241
+ I++++NN G Y
Sbjct: 451 DKQHPIILVLNNEG-YT 466
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Length = 552 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 6e-10
Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY-L 68
+ L G +++FG+ G + L I ++G NE A YAA GY
Sbjct: 9 DYLLDRLTDCGADHLFGVPGDYNLQF--LDHVIDSPDICWVGCANELNASYAAD--GYAR 64
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG---SCAQDHE-------GIGGFQ 118
K L G G L G+A + P+L I G + AQ G G F+
Sbjct: 65 CKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR 124
Query: 119 ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
++ P A + + + +PG
Sbjct: 125 H--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG 163
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Length = 604 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-29
Identities = 55/397 (13%), Positives = 128/397 (32%), Gaps = 51/397 (12%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKK 329
GI G LA+ C I +E++A + A + ++
Sbjct: 35 GSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQR 94
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK 389
P + + SG + + + A + P++V+ + +G Q Q L + K
Sbjct: 95 PVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVK 154
Query: 390 YSA-------RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ P + I +A + G +++ VP +
Sbjct: 155 FFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVN---------------VPLRE 199
Query: 443 VLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAP 502
L P L ++ ++ L + ++ EA+
Sbjct: 200 PLMPDLSDEPFGRMRTGRH-------------VSVKTGTQSVDRESLSDVAEMLAEAEKG 246
Query: 503 LVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLV 562
+++ G+ + + E +++ + P L P+ + V A L++ +L
Sbjct: 247 MIVCGELHSDADKE-NIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELK 305
Query: 563 LLLGARLNWILHFGRAP---------RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRL 613
L + ++ FG P + ++ I +D + + +A I + +
Sbjct: 306 RKLRP--DVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASV 363
Query: 614 TVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 650
+++ L+ R+ + WQ + + + + Q
Sbjct: 364 FAEEIMAGLTAATRSSEWLE---KWQFVNGRFREHLQ 397
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Length = 604 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 3e-18
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 8/155 (5%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKK 71
GI G LA+ C I +E++A + A + ++
Sbjct: 35 GSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQR 94
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCK 131
P + + SG + + + A + P++V+ + +G Q Q L + K
Sbjct: 95 PVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVK 154
Query: 132 YSA-------RPPNIHLIGQHVEKAVRLSTFGKPG 159
+ P + I +A + G
Sbjct: 155 FFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMG 189
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Length = 604 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 176 TFGTMGV-GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
+ G G+ +++A+ V V GD +F L + +P+ +++V
Sbjct: 448 IYSNRGANGIDGVVSSAMGV-CEGTKAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILV 506
Query: 235 NNNGIYGGFDEATYAWLDIIKKSNMSEDY 263
NN+G G F +L + ED
Sbjct: 507 NNDG-GGIFS-----FLPQASEKTHFEDL 529
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 9e-29
Identities = 60/410 (14%), Positives = 124/410 (30%), Gaps = 68/410 (16%)
Query: 271 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYL 326
+ L G++ G P LA+ + + +E++A + A +
Sbjct: 15 AAFIEELVQAGVKEAIISPGSRSTP---LALMMAEHPILKIYVDVDERSAGFFALGLAKA 71
Query: 327 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE--GIGGFQECPQVELA 384
+K+P V L SG + F +A A ++ P++V+ + + HE +G Q Q+ L
Sbjct: 72 SKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVL--TADRPHELRNVGAPQAMDQLHLY 129
Query: 385 RPYCKYSA-------RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANL-LAQRINQSA 436
+ K + H +AV ++ G +L+FP L + S
Sbjct: 130 GSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPILEPSP 189
Query: 437 LVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496
T K + L I ++
Sbjct: 190 FTATGKKHHHVHIYYT-------------------------HEVLDDSSIQKM----VTE 220
Query: 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM-GKGVVPDAHPNCVSAARTH- 554
K + ++G + E ++ P L P+ G +
Sbjct: 221 CTGKKGVFVVG-PIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFL 279
Query: 555 ------ALQNADLVLLLGARL--NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
++V+ G+ + ++ S+++ VD A
Sbjct: 280 KEAEIIDKLTPEVVIRFGSMPVSKPLKNW---LEQLSDIRFYVVDPGAAWKDPIKAVTDM 336
Query: 607 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656
I D R + ++Q + ++ + W + R++ L +
Sbjct: 337 IHCDERFLLDIMQQNMPDDAKD------AAWLNGWTSYNKVAREIVLAEM 380
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 1e-17
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 18/160 (11%)
Query: 13 QVIAQALKFQGIEYVFGIVG---IPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYL 68
+ L G++ G P LA+ + + +E++A + A +
Sbjct: 15 AAFIEELVQAGVKEAIISPGSRSTP---LALMMAEHPILKIYVDVDERSAGFFALGLAKA 71
Query: 69 TKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE--GIGGFQECPQVELA 126
+K+P V L SG + F +A A ++ P++V+ + + HE +G Q Q+ L
Sbjct: 72 SKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVL--TADRPHELRNVGAPQAMDQLHLY 129
Query: 127 RPYCKYSA-------RPPNIHLIGQHVEKAVRLSTFGKPG 159
+ K + H +AV ++ G
Sbjct: 130 GSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRG 169
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 24/131 (18%)
Query: 136 PPNIHL---IGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 192
P L + + +L N G G + + AL A++
Sbjct: 400 PDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLAN--------RGANG-IDGVVSSALGASV 450
Query: 193 YCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLD 252
+ + + GD +F L +Y++ + +VIVNN+G G F +L
Sbjct: 451 ------VFQPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIVIVNNDG-GGIFS-----FLP 498
Query: 253 IIKKSNMSEDY 263
+ E
Sbjct: 499 QANEPKYFESL 509
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Length = 556 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 57/404 (14%), Positives = 124/404 (30%), Gaps = 58/404 (14%)
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAAC 317
MS A VI +AL G+ ++ G L +A + + +E+
Sbjct: 1 MSVSAFNRRWA-AVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLG 59
Query: 318 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE--GIGGF 375
+ A + ++K+P +V SG + + + + A + ++++ + + E G
Sbjct: 60 HLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILL--TADRPPELIDCGAN 117
Query: 376 QECPQVELARPYCKYSA---RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
Q Q + + +S RP V G +++
Sbjct: 118 QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHIN---------- 167
Query: 433 NQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAEL--K 490
P + L + G+ + +G + PW A
Sbjct: 168 -----CPFAEPLYGEMDDTGL--------------SWQQRLGDWWQDDKPWLREAPRLES 208
Query: 491 QASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG--KGVVPDAHPNCV 548
+ R + ++ G ++ ++ + + P + + +P A
Sbjct: 209 EKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLG 268
Query: 549 SAARTHALQNADLVLLLGARL--NWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVA 606
+A T LQ A +V+ LG+ L +L + + VD L +
Sbjct: 269 NAKATSELQQAQIVVQLGSSLTGKRLLQW---QASCEPEEYWIVDDIEGRLDPAHHRGRR 325
Query: 607 IQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 650
+ +++ ++ PW E+ + Q
Sbjct: 326 LIANIADWLELHPA-----------EKRQPWCVEIPRLAEQAMQ 358
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Length = 556 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 1e-16
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 11/174 (6%)
Query: 1 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAAC 59
MS A VI +AL G+ ++ G L +A + + +E+
Sbjct: 1 MSVSAFNRRWA-AVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLG 59
Query: 60 YAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHE--GIGGF 117
+ A + ++K+P +V SG + + + + A + ++++ + + E G
Sbjct: 60 HLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILL--TADRPPELIDCGAN 117
Query: 118 QECPQVELARPYCKYSA---RPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168
Q Q + + +S RP V G + N P
Sbjct: 118 QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHI--NCP 169
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Length = 556 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIV 234
G G G L A A GK + + GD + + L L + P++L++V
Sbjct: 414 GASGIDG-LLSTAAGVQR-----ASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVV 467
Query: 235 NNNG 238
NNNG
Sbjct: 468 NNNG 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 85/510 (16%), Positives = 155/510 (30%), Gaps = 170/510 (33%)
Query: 199 PGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSN 258
P K V+ + G G + + L+ + Y+ + + I+ WL+ +K N
Sbjct: 149 PAKNVL-IDGVLGSGKTWVALDVCLSYK----VQCKMDFKIF---------WLN-LKNCN 193
Query: 259 MSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACY 318
E E L Q L +Q I+ + + I +R
Sbjct: 194 SPETVLEML-------QKLLYQ-------------IDPNWTSRSDHSSNIKLRIHSI--- 230
Query: 319 AAQAIGYLTKKPGV-CLV----VSGPGLLHTFGGMANAQINCWPMLVI---------GGS 364
A+ L KP CL+ V + F ++C +L+ +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LSC-KILLTTRFKQVTDFLSA 283
Query: 365 CAQDH----EGIGGFQE------------CPQVELARPYCKYSARPPNIHLIG------- 401
H C +L R + P + +I
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGL 341
Query: 402 ------QHVEKAVRLSTFGKPGVSYLDFPANL------LAQRI-NQSALVPTPKVLEPTL 448
+HV +L+T + ++ L+ PA L+ + SA +PT +L L
Sbjct: 342 ATWDNWKHVNCD-KLTTIIESSLNVLE-PAEYRKMFDRLS--VFPPSAHIPT-ILLS--L 394
Query: 449 PWPGIAELKQASQLILE--AKAPLVIIGKVLEPTLPWPGI--------AELKQASRLILE 498
W + + +++ K L + + E T+ P I R I++
Sbjct: 395 IWFDVIK--SDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 499 A-----------KAPLVI-------IG---KGAAYSQAETELLSFVNSF-NLPFLPTPMG 536
P + IG K E + F F + FL
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI--EHPE-RMTLFRMVFLDFRFL----E 504
Query: 537 KGVVPDAHPNCVSAARTHALQNADLVL----------LLGARLNWILHFGRAPRFKSNV- 585
+ + D+ S + + LQ L +N IL F P+ + N+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQ--QLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLI 560
Query: 586 -----KIIQVDLNAEELHNSV--QAAVAIQ 608
++++ L AE ++ +A +Q
Sbjct: 561 CSKYTDLLRIALMAE--DEAIFEEAHKQVQ 588
|
| >3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} Length = 170 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 2e-06
Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 490 KQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS 549
+ A+++I +AK PL+++G A + ++ + N+P T V+ D +
Sbjct: 25 EMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKY 84
Query: 550 AARTHALQ--------------NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVD 591
N D+++ +G + +I A + SN+K I ++
Sbjct: 85 INAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIE 140
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 658 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 700
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 701 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 746
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 747 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 788
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 789 LPVIL------VIVNNNGIY--GGFDETTYASIVE 815
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 692 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 734
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 735 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 780
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 781 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 822
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 823 LPVIL------VIVNNNGIY--GGFDETTYASIVE 849
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 726 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 768
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 769 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 814
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 815 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 856
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 857 LPVIL------VIVNNNGIY--GGFDETTYASIVE 883
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 760 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 802
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 803 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 848
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 849 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 890
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 891 LPVIL------VIVNNNGIY--GGFDETTYASIVE 917
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 794 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 836
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 837 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 882
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 883 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 924
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 925 LPVIL------VIVNNNGIY--GGFDETTYASIVE 951
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 57/215 (26%)
Query: 828 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPV---------ILVIVNNNGIY- 870
+ ++ IY GG+D + S VE + E V + IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 871 -GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIV 916
GGFD + + +E + + + + ++V + IY GG+D + V
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 917 E-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-----SGEVTTV 958
E +G T V P+ V + N+ IY GGFD T + S VE + TTV
Sbjct: 178 EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Query: 959 LPVIL------VIVNNNGIY--GGFDEATYASIVE 985
+ V +Y G+D + S +E
Sbjct: 238 TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIE 272
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 658 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 702
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 703 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 747
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 748 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 781
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 692 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 736
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 737 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 781
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 782 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 815
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 726 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 770
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 771 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 815
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 816 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 849
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 760 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 804
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 805 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 849
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 850 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 883
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 794 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 838
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 839 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 883
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 884 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 917
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 41/165 (24%)
Query: 828 VIVNNNGIY--GGFDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GG 872
V V + IY GG + + VE E V P++ V V N +Y GG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 873 FDETTYASIVE-----SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE-- 917
FD T + E E + + V V +N IY GG+D + VE
Sbjct: 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Query: 918 ---SGEVTTVLPVIL------VIVNNNGIY--GGFDETTYASIVE 951
+ T V P+ + V+ IY GG+D T+ VE
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 100.0 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 100.0 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 100.0 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 100.0 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 100.0 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 100.0 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 100.0 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 100.0 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 100.0 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 100.0 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 100.0 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 100.0 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 100.0 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 100.0 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 100.0 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 100.0 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 100.0 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 100.0 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 100.0 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 100.0 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 100.0 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 100.0 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 100.0 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 100.0 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 100.0 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 100.0 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 100.0 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 100.0 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 100.0 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 100.0 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 100.0 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 100.0 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 100.0 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 100.0 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 100.0 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 100.0 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 100.0 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 100.0 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 100.0 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 100.0 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 100.0 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 100.0 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 100.0 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 100.0 | |
| 3cf4_G | 170 | Acetyl-COA decarboxylase/synthase epsilon subunit; | 99.48 | |
| 1ytl_A | 174 | Acetyl-COA decarboxylase/synthase complex epsilon | 99.37 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 99.33 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 99.28 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.11 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 99.01 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 98.99 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.98 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 98.89 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 98.85 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 98.85 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 98.84 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 98.81 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 98.78 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 98.78 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 98.72 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 98.72 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 98.71 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 98.69 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 98.68 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 98.68 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 98.66 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 98.65 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 98.63 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 98.61 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 98.6 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 98.58 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 98.58 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 98.51 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 98.49 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 98.49 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 98.48 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 98.48 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 98.47 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 98.46 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.42 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 98.41 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 98.39 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 98.33 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 98.3 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 97.95 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 97.76 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 97.74 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 97.6 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 97.41 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 97.33 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 97.0 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 96.98 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 96.79 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 96.62 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 94.47 | |
| 3glr_A | 285 | NAD-dependent deacetylase sirtuin-3, mitochondria; | 94.2 | |
| 1j8f_A | 323 | SIRT2, sirtuin 2, isoform 1, silencing INFO; gene | 93.15 | |
| 1efv_A | 315 | Electron transfer flavoprotein; electron transport | 90.52 | |
| 2hjh_A | 354 | NAD-dependent histone deacetylase SIR2; protein, s | 90.43 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 90.25 | |
| 4iao_A | 492 | NAD-dependent histone deacetylase SIR2; protein co | 89.76 | |
| 2fsv_C | 203 | NAD(P) transhydrogenase subunit beta; NAD(P) trans | 89.64 | |
| 1pno_A | 180 | NAD(P) transhydrogenase subunit beta; nucleotide b | 89.59 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 89.16 | |
| 1djl_A | 207 | Transhydrogenase DIII; rossmann fold dinucleotide | 89.14 | |
| 1q1a_A | 289 | HST2 protein; ternary complex, histone deacetylase | 88.89 | |
| 1d4o_A | 184 | NADP(H) transhydrogenase; nucleotide-binding fold, | 88.35 | |
| 1efp_A | 307 | ETF, protein (electron transfer flavoprotein); ele | 87.98 | |
| 1q14_A | 361 | HST2 protein; histone deacetylase, hydrolase; 2.50 | 87.71 | |
| 1o97_D | 320 | Electron transferring flavoprotein alpha-subunit; | 87.68 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; | 87.12 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 87.01 | |
| 1s5p_A | 235 | NAD-dependent deacetylase; protein deacetylase, SI | 86.66 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxido | 86.38 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 85.88 | |
| 2bru_C | 186 | NAD(P) transhydrogenase subunit beta; paramagnetic | 85.82 | |
| 3pki_A | 355 | NAD-dependent deacetylase sirtuin-6; ADP ribose, s | 84.35 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 83.66 | |
| 1yc5_A | 246 | NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, | 83.48 | |
| 3k35_A | 318 | NAD-dependent deacetylase sirtuin-6; rossmann fold | 83.36 | |
| 1ma3_A | 253 | SIR2-AF2, transcriptional regulatory protein, SIR2 | 82.54 | |
| 1m2k_A | 249 | Silent information regulator 2; protein-ligand com | 81.38 | |
| 3riy_A | 273 | NAD-dependent deacetylase sirtuin-5; desuccinylase | 80.37 |
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-79 Score=741.62 Aligned_cols=551 Identities=32% Similarity=0.535 Sum_probs=440.0
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+..++++++|++.|+++||+++||+||++++++++++.+++|++|.++||++|+|||+||||+||||+||+||||||++|
T Consensus 7 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N 86 (568)
T 2c31_A 7 VELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLN 86 (568)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 34689999999999999999999999999999999997778999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCC--CCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g--~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+++||++|+.+++|||+|||++|.++++ ++++|++||.++|+++|||++++++++++++.+++|++.|.+++||||||
T Consensus 87 ~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 166 (568)
T 2c31_A 87 GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYV 166 (568)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999999999999999999999888 69999999999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++.++.+..... .+.. . + ........++.+.+++++++|++|||
T Consensus 167 ~iP~dv~~~~~~~~~~~-~~~~--~----------------------~------~~~~~~~~~~~~~i~~~~~~l~~a~r 215 (568)
T 2c31_A 167 DLPAKLFGQTISVEEAN-KLLF--K----------------------P------IDPAPAQIPAEDAIARAADLIKNAKR 215 (568)
T ss_dssp EEETHHHHCEEEHHHHH-HHCC--C----------------------C------SCSSCCCCCCHHHHHHHHHHHHTCSS
T ss_pred eCCHHHhhccccccccc-cccc--c----------------------c------cCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999886654321000 0000 0 0 00112235678899999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCccc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRF 581 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~ 581 (1065)
|+|++|.++.++++.+++++|||++|+||+++++|||.+|++||+++|...++++++||+||.+|+++++..+.++...|
T Consensus 216 pvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~ 295 (568)
T 2c31_A 216 PVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTW 295 (568)
T ss_dssp EEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGCSGGG
T ss_pred CEEEECcccccccHHHHHHHHHHHhCCCEEecccccccCCCCChhhcchHHHhhhccCCEEEEECCCCccccccCccccc
Confidence 99999999877777899999999999999999999999999999999987777889999999999999877665655556
Q ss_pred c-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhh
Q psy14416 582 K-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIV 660 (1065)
Q Consensus 582 ~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 660 (1065)
. ++.++||||.|+.++++++.+++.+++|++.+|++|.+.++... .....|.+++++..+.......+..
T Consensus 296 ~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~---- 366 (568)
T 2c31_A 296 GDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAP-----KADAEWTGALKAKVDGNKAKLAGKM---- 366 (568)
T ss_dssp TTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhhhcC-----CCcHHHHHHHHHHHHhhhhhhhhhh----
Confidence 5 67899999999999999999999999999999999998875211 1245788776655443322211110
Q ss_pred ccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcC--CCcEEEEECCCCcCccc
Q psy14416 661 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL--PVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~L--P~d~ilv~d~G~~~~~~ 738 (1065)
.. . .+..|+ + +..++. .|.+.+ |++.+++.|+|+.+.|.
T Consensus 367 --------------~~-----~-~~~~~~-----~---~~~~~~-----------~l~~~l~~~~~~iv~~dg~~~~~~~ 407 (568)
T 2c31_A 367 --------------TA-----E-TPSGMM-----N---YSNSLG-----------VVRDFMLANPDISLVNEGANALDNT 407 (568)
T ss_dssp --------------HC-----C-CCTTCB-----C---HHHHHH-----------HHHHHHHHCCSSEEEEESSHHHHHH
T ss_pred --------------cc-----c-ccCCCc-----C---HHHHHH-----------HHHHHhcCCCCeEEEECChhHHHHH
Confidence 00 0 002345 6 777888 999999 99999998876533321
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++ +...| +.+
T Consensus 408 ~~~~-----------------------------------------------~~~~p-------~~~-------------- 419 (568)
T 2c31_A 408 RMIV-----------------------------------------------DMLKP-------RKR-------------- 419 (568)
T ss_dssp HHHC-----------------------------------------------CCCST-------TCE--------------
T ss_pred HHHh-----------------------------------------------cccCC-------CeE--------------
Confidence 1100 00011 001
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
-|+|.+|+| |+++|+++ |++++ |+++|+
T Consensus 420 ------------~~~g~~g~~----------------------------G~~l~~Ai--Gaala---------~~~~vv- 447 (568)
T 2c31_A 420 ------------LDSGTWGVM----------------------------GIGMGYCV--AAAAV---------TGKPVI- 447 (568)
T ss_dssp ------------EESTTTTCS----------------------------SCHHHHHH--HHHHH---------HCSCEE-
T ss_pred ------------EcCCCCccc----------------------------cccHHHHH--HHHhC---------CCCcEE-
Confidence 135557777 88888888 77775 467899
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++++ +++++|++|||+||+|||.+....
T Consensus 448 --------------------------------~i~GDGsf-~~~~~el~ta-----~~~~l~~~ivv~NN~~~~~~~~~~ 489 (568)
T 2c31_A 448 --------------------------------AVEGDSAF-GFSGMELETI-----CRYNLPVTVIIMNNGGIYKGNEAD 489 (568)
T ss_dssp --------------------------------EEEEHHHH-HTTGGGHHHH-----HHTTCCEEEEEEESSBSSCSCCCC
T ss_pred --------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCchhHHHHHHH
Confidence 99999999 9999999999 999999999999999977754322
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhh
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
.+ +. ... .+. .+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++.+.+..+|
T Consensus 490 ~~------~~--~~~-~~~-~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~~~~~~~~~~~~~~~ 558 (568)
T 2c31_A 490 PQ------PG--VIS-CTR-LTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVAS-GKPCLINAMIDPDAGVESGRIKS 558 (568)
T ss_dssp SB------TT--BCC-TTB-CCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHHHH-TSCEEEEEEBCTTSSCC------
T ss_pred hh------cC--Ccc-cCc-CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeccccCCCcccccc
Confidence 10 00 111 122 467999999999999999999999999999999976 89999999999999999999999
Q ss_pred hHhh
Q psy14416 1059 LTNL 1062 (1065)
Q Consensus 1059 ~~~~ 1062 (1065)
++.-
T Consensus 559 ~~~~ 562 (568)
T 2c31_A 559 LNVV 562 (568)
T ss_dssp ----
T ss_pred cchh
Confidence 8654
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-79 Score=740.71 Aligned_cols=546 Identities=34% Similarity=0.579 Sum_probs=442.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+.++++++|++.|+++||+++||+||++++++++++.+++|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 6 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~ 85 (564)
T 2q28_A 6 QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNG 85 (564)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred ccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHH
Confidence 45789999999999999999999999999999999977789999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCC--CCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g--~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
++||++|+.+++|||+|||++|.++++ ++++|++||.++|+++|||++++++++++++.+++|++.|.+++||||||+
T Consensus 86 ~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 165 (564)
T 2q28_A 86 LTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLD 165 (564)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999999877 799999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhccccc--cCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCC
Q psy14416 423 FPANLLAQRINQS--ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 423 iP~Dv~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Ak 500 (1065)
||.|++.++++.. .....+. ........++.+.+++++++|++||
T Consensus 166 iP~dv~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~i~~~~~~l~~a~ 212 (564)
T 2q28_A 166 LPANVLAATMEKDEALTTIVKV---------------------------------ENPSPALLPCPKSVTSAISLLAKAE 212 (564)
T ss_dssp EEHHHHHCEEEHHHHHHTCCCC---------------------------------SCSSCCEEECHHHHHHHHHHHHHCS
T ss_pred cCHHHhhccccccccccccccc---------------------------------cCCCCCCCCCHHHHHHHHHHHHcCC
Confidence 9999987654321 0000000 0001122456788999999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCcc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPR 580 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~ 580 (1065)
||+|++|.++.++++.+++++|||++|+||+++++|||.++++||+++|...++++++||+||.+|+++.+....++ ..
T Consensus 213 rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~ 291 (564)
T 2q28_A 213 RPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KG 291 (564)
T ss_dssp SEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGT-TT
T ss_pred CcEEEECcccccccHHHHHHHHHHHhCCCEEeccCccccCCCCChhhcChHHHhHhhcCCEEEEECCcccccccccc-cc
Confidence 99999999987777789999999999999999999999999999999998777788999999999999987555444 44
Q ss_pred ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhhhh
Q psy14416 581 FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILVIV 660 (1065)
Q Consensus 581 ~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 660 (1065)
|.++.++||||.|+..+++++..++.+++|++.+|++|.+.++... ......|.+++++..+.+.....+..
T Consensus 292 ~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~~---- 363 (564)
T 2q28_A 292 WAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNT----FTTPLVWRDILNIHKQQNAQKMHEKL---- 363 (564)
T ss_dssp SCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHHHSC----CCCCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred cCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhhhcC----cCCcHHHHHHHHHHHHhhhhhhhhhh----
Confidence 5567899999999999999999999999999999999998875311 11246788776655443322221110
Q ss_pred ccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcC--CCcEEEEECCCCcCccc
Q psy14416 661 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL--PVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~L--P~d~ilv~d~G~~~~~~ 738 (1065)
. ....|+ + +..++. .|.+.+ |++.+++.|+|+.+.|.
T Consensus 364 --------------~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~d~ivv~dg~~~~~~~ 402 (564)
T 2q28_A 364 --------------S--------TDTQPL-----N---YFNALS-----------AVRDVLRENQDIYLVNEGANTLDNA 402 (564)
T ss_dssp --------------T--------CCCSSB-----C---HHHHHH-----------HHHHHHTTCTTCEEEEESSHHHHHH
T ss_pred --------------c--------cCCCCc-----C---HHHHHH-----------HHHHHhcCCCCEEEEECCchHHHHH
Confidence 0 112356 6 778888 999999 99999998875433221
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
..++ +...| +.+.
T Consensus 403 ~~~~-----------------------------------------------~~~~p-------~~~~------------- 415 (564)
T 2q28_A 403 RNII-----------------------------------------------DMYKP-------RRRL------------- 415 (564)
T ss_dssp HHHS-----------------------------------------------CCCSS-------SCEE-------------
T ss_pred HHHh-----------------------------------------------cccCC-------CeEe-------------
Confidence 1100 00011 0001
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
|+|.+|+| |+++|+++ |++++ |+++|+
T Consensus 416 -------------~~g~~g~~----------------------------G~~l~~Ai--Gaa~a---------~~~~vv- 442 (564)
T 2q28_A 416 -------------DCGTWGVM----------------------------GIGMGYAI--GASVT---------SGSPVV- 442 (564)
T ss_dssp -------------ESTTTTCT----------------------------TCHHHHHH--HHHHH---------HCSCEE-
T ss_pred -------------cCCCCCcc----------------------------cchHHHHH--HHhhc---------CCCcEE-
Confidence 35556776 88888888 77775 567899
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++++ +++++|++|||+||+|+|.+....
T Consensus 443 --------------------------------~i~GDGsf-~~~~~el~ta-----~~~~l~~~ivv~NN~~~~~~~~~~ 484 (564)
T 2q28_A 443 --------------------------------AIEGDSAF-GFSGMEIETI-----CRYNLPVTIVIFNNGGIYRGDGVD 484 (564)
T ss_dssp --------------------------------EEEEHHHH-HTTGGGHHHH-----HHTTCCEEEEEEECSBSSCSCCCC
T ss_pred --------------------------------EEEcchHh-hccHHHHHHH-----HHhCCCeEEEEEeCchhHHHHHHH
Confidence 99999999 9999999999 999999999999999977765431
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhh
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
. ...+. ...+...+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++.+....+|
T Consensus 485 ~----~~~~~----~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~~~~~~~~~~~~~~~ 555 (564)
T 2q28_A 485 L----SGAGA----PSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQS-RKPTIINVVIDPAAGTESGHITK 555 (564)
T ss_dssp T----TSSCC----CCTTBCCTTCCGGGGGGGGTCEEEEECSHHHHHHHHHHHHHH-TSCEEEEEEBCTTSSCCCSCCC-
T ss_pred H----hccCC----ccccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeccccCCCcccccc
Confidence 0 00011 112334568999999999999999999999999999999976 89999999999999999888889
Q ss_pred hH
Q psy14416 1059 LT 1060 (1065)
Q Consensus 1059 ~~ 1060 (1065)
+.
T Consensus 556 ~~ 557 (564)
T 2q28_A 556 LN 557 (564)
T ss_dssp --
T ss_pred cC
Confidence 84
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-77 Score=725.25 Aligned_cols=532 Identities=20% Similarity=0.269 Sum_probs=436.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+||||+||+||+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~ 81 (549)
T 3eya_A 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL 81 (549)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence 46899999999999999999999999999999999775 79999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFP 424 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP 424 (1065)
++||++|+.+++|||+|||++|.+..+++++|++||.++|+++|||++++++++++++.+++|++.|.+. +|||||+||
T Consensus 82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP 160 (549)
T 3eya_A 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGVSVVVLP 160 (549)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSEEEEEEE
T ss_pred HHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984 699999999
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q psy14416 425 ANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLV 504 (1065)
Q Consensus 425 ~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvI 504 (1065)
.|++..+.+..... . |. ........++++.+++++++|++||||+|
T Consensus 161 ~dv~~~~~~~~~~~---~-------~~------------------------~~~~~~~~~~~~~i~~~~~~l~~A~rpvI 206 (549)
T 3eya_A 161 GDVALKPAPEGATM---H-------WY------------------------HAPQPVVTPEEEELRKLAQLLRYSSNIAL 206 (549)
T ss_dssp HHHHTSBCCTTCCC---C-------CC------------------------CCCCCEEECCHHHHHHHHHHHHTCCSEEE
T ss_pred hhHhhcccCccccc---c-------cc------------------------ccCCCCCCCCHHHHHHHHHHHHhCCCcEE
Confidence 99998876532211 0 00 01112234678899999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccCC
Q psy14416 505 IIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFGR 577 (1065)
Q Consensus 505 lvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~ 577 (1065)
++|.++. ++.+++++|+|++|+||++++++||.++++||+++|. ..++++++||+||.+|++++++. +
T Consensus 207 l~G~g~~--~a~~~l~~lae~~~~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~~---~ 281 (549)
T 3eya_A 207 MCGSGCA--GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRA---F 281 (549)
T ss_dssp EECGGGT--TCHHHHHHHHHHHTCCEEECGGGHHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCGG---G
T ss_pred EECCCch--HHHHHHHHHHHHhCCCEEECCccCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCccc---c
Confidence 9999874 5678999999999999999999999999999999872 45677889999999999987642 2
Q ss_pred CccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhh
Q psy14416 578 APRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVIL 657 (1065)
Q Consensus 578 ~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 657 (1065)
++++.++||||.|+.++++.+..++.+++|+..+|++|.+.+.. ....+|.+.|++..+++++...+..
T Consensus 282 ---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (549)
T 3eya_A 282 ---YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEE-------KADRKFLDKALEDYRDARKGLDDLA- 350 (549)
T ss_dssp ---SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSCC-------CCCCHHHHHHHHHHHHHHHHHHHTS-
T ss_pred ---CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc-------cCcHHHHHHHHHHHHHHHHHHhhhc-
Confidence 33567899999999999999999999999999999999887752 2345788888777666554432220
Q ss_pred hhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 658 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
. ....++ + +..+++ .|.+.+|++++++.|+|.+..|
T Consensus 351 ------------------~-------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~~~~ 386 (549)
T 3eya_A 351 ------------------K-------PSEKAI-----H---PQYLAQ-----------QISHFAADDAIFTCDVGTPTVW 386 (549)
T ss_dssp ------------------C-------CCSSCB-----C---HHHHHH-----------HHHHHSCTTCEEEECTTHHHHH
T ss_pred ------------------C-------CCCCCc-----C---HHHHHH-----------HHHhhCCCCCEEEEcCcHHHHH
Confidence 0 112356 6 778888 9999999999999999976666
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. . -|.+ ++.
T Consensus 387 ~~~~~~~------~---~~~~---------------------------------------------~~~----------- 401 (549)
T 3eya_A 387 AARYLKM------N---GKRR---------------------------------------------LLG----------- 401 (549)
T ss_dssp HHHHCCC------C---SSCE---------------------------------------------EEC-----------
T ss_pred HHHhCcc------C---CCCc---------------------------------------------EEe-----------
Confidence 4432211 0 0000 000
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
++-+|+| |+++++++ |++++. |+++|+
T Consensus 402 ---------------~~~~g~m----------------------------G~~l~~Ai--Gaala~--------~~~~vv 428 (549)
T 3eya_A 402 ---------------SFNHGSM----------------------------ANAMPQAL--GAQATE--------PERQVV 428 (549)
T ss_dssp ---------------CTTTCCT----------------------------TCHHHHHH--HHHHHS--------TTSCEE
T ss_pred ---------------CCCCchh----------------------------hhHHHHHH--HHHHhC--------CCCcEE
Confidence 1223444 88888877 889988 889999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++++ +++++|+++||+||+| |+.+..
T Consensus 429 ---------------------------------~i~GDGs~-~~~~~~L~ta-----~~~~l~~~ivv~nN~~-~g~~~~ 468 (549)
T 3eya_A 429 ---------------------------------AMCGDGGF-SMLMGDFLSV-----VQMKLPVKIVVFNNSV-LGFVAM 468 (549)
T ss_dssp ---------------------------------EEEEHHHH-HHTGGGHHHH-----HHTTCCCEEEEEECSB-CCCC--
T ss_pred ---------------------------------EEEccchh-hccHHHHHHH-----HHhCCCeEEEEEeCCc-cHHHHH
Confidence 99999999 9999999999 9999999999999987 333322
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhh
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFS 1057 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 1057 (1065)
... . ......+...+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++..|+...
T Consensus 469 ~~~-~-------~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~liev~~~~~~~~~p~~~~ 539 (549)
T 3eya_A 469 EMK-A-------GGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSI-DGPVLVDVVVAKEELAIPPQIK 539 (549)
T ss_dssp ------------------CCBCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHHS-SSCEEEEEEBCCCCSCCCCCCC
T ss_pred HHH-h-------cCCCCcCCcCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeccccccCCCCCC
Confidence 110 0 011223444577999999999999999999999999999999986 8999999999999998777666
Q ss_pred hh
Q psy14416 1058 WL 1059 (1065)
Q Consensus 1058 ~~ 1059 (1065)
|.
T Consensus 540 ~~ 541 (549)
T 3eya_A 540 LE 541 (549)
T ss_dssp --
T ss_pred HH
Confidence 54
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-76 Score=718.80 Aligned_cols=529 Identities=21% Similarity=0.319 Sum_probs=434.5
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
+..++++++|++.|+++||++|||+||+++++|++++.+ ++|++|.++||++|+|||+||||+||||+||++|+|||+
T Consensus 8 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~ 87 (603)
T 4feg_A 8 QTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGG 87 (603)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHH
T ss_pred cCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchH
Confidence 356899999999999999999999999999999999976 479999999999999999999999999999999999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
+|+++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.+ ++|||||
T Consensus 88 ~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l 166 (603)
T 4feg_A 88 THLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVV 166 (603)
T ss_dssp HTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 6799999
Q ss_pred ecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCC
Q psy14416 422 DFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKA 501 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Akr 501 (1065)
+||.|++..+++...... +.. .......+.++.+.+++++++|++|||
T Consensus 167 ~iP~dv~~~~~~~~~~~~-~~~-------------------------------~~~~~~~~~~~~~~i~~~~~~l~~A~r 214 (603)
T 4feg_A 167 QIPVDLPWQQIPAEDWYA-SAN-------------------------------SYQTPLLPEPDVQAVTRLTQTLLAAER 214 (603)
T ss_dssp EEETTGGGSEEETTTCCC-CGG-------------------------------GCCCCCCCBCCHHHHHHHHHHHHHCSS
T ss_pred EeChhhhhccCCcccccc-ccc-------------------------------ccCCCCCCCCCHHHHHHHHHHHhcCCC
Confidence 999999988775432110 000 011123345788999999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
|+|++|.++ .++.++|++|+|++++||++++++||.++++||+++|. ..++++++||+||.+|+++++.
T Consensus 215 PvIl~G~g~--~~a~~~l~~lae~~~~PV~~t~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~-- 290 (603)
T 4feg_A 215 PLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFA-- 290 (603)
T ss_dssp EEEEECGGG--TTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTTT--
T ss_pred eEEEECCCc--hhHHHHHHHHHHHHCCCEEEcCccccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCcc--
Confidence 999999988 36688999999999999999999999999999999873 4567889999999999999853
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.++..+.++.++||||.|+.++++.+.+++.+++|++.+|++|.+.+.. .....|.+.+++..+.+++...+
T Consensus 291 -~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~ 362 (603)
T 4feg_A 291 -EVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSE-------RESTPWWQANLANVKNWRAYLAS 362 (603)
T ss_dssp -TTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhhc-------cCChHHHHHHHHHHHHHHHHhhh
Confidence 3444455678999999999999999999999999999999999988752 22357888877666666554432
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
.. . ....++ + +..+++ .|.+.+|++++|+.|.|++
T Consensus 363 ~~-------------------~-------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~ 397 (603)
T 4feg_A 363 LE-------------------D-------KQEGPL-----Q---AYQVLR-----------AVNKIAEPDAIYSIDVGDI 397 (603)
T ss_dssp HH-------------------T-------CCSSBC-----C---HHHHHH-----------HHHHHCCTTCEEEECSSHH
T ss_pred hh-------------------c-------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEEECCchH
Confidence 20 0 123456 7 778899 9999999999999999976
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|..+++.. . -|.+
T Consensus 398 ~~~~~~~~~~-----~----~~~~-------------------------------------------------------- 412 (603)
T 4feg_A 398 NLNANRHLKL-----T----PSNR-------------------------------------------------------- 412 (603)
T ss_dssp HHHHHHHCCC-----C----TTCE--------------------------------------------------------
T ss_pred HHHHHHhcee-----C----CCCc--------------------------------------------------------
Confidence 6664433211 0 0000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
+-.++.+|+| |+++|.++ |++++. |++
T Consensus 413 ---------------~~~~~~~g~~----------------------------G~~l~~A~--Gaala~--------~~~ 439 (603)
T 4feg_A 413 ---------------HITSNLFATM----------------------------GVGIPGAI--AAKLNY--------PER 439 (603)
T ss_dssp ---------------EECCCSSCCT----------------------------TCHHHHHH--HHHHHC--------TTS
T ss_pred ---------------eecCcccccc----------------------------cchhHHHh--hHHHhC--------CCC
Confidence 0013345555 88888887 888888 888
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++++++ .++++|+++||+||+| |+.
T Consensus 440 ~vv---------------------------------~~~GDG~~-~~~~~~l~~a-----~~~~lp~~~vv~nN~~-~~~ 479 (603)
T 4feg_A 440 QVF---------------------------------NLAGDGGA-SMTMQDLATQ-----VQYHLPVINVVFTNCQ-YGF 479 (603)
T ss_dssp CEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEECSB-CHH
T ss_pred cEE---------------------------------EEeccHHH-hhhHHHHHHH-----HHHCcCeEEEEEECCc-hHH
Confidence 899 99999999 9999999999 9999999999999987 332
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHH--hcCCCCEEEEEEeCCC
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCL--QTTTRPSLINILINPS 1048 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~--~~~~~~~li~~~~~~~ 1048 (1065)
+... ... . +. . .......+.+||.++|++||++|++|++.+||++++++++ +. ++|+||||.+++.
T Consensus 480 ~~~~-~~~-~--~~-~--~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~-~gP~lIev~~~~~ 547 (603)
T 4feg_A 480 IKDE-QED-T--NQ-N--DFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQ-HEPVLIDAVITGD 547 (603)
T ss_dssp HHHH-HHH-H--CS-S--CCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTT-TSCEEEEEECCCC
T ss_pred HHHH-HHH-h--cC-C--CcccCcCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHhcC-CCcEEEEEEeCCC
Confidence 2211 111 0 11 0 0111223678999999999999999999999999999998 65 8999999999765
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-76 Score=720.15 Aligned_cols=539 Identities=15% Similarity=0.122 Sum_probs=400.8
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++.+++|++.|+++||++|||+||+++++|++++.+ ++|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 10 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~ 89 (578)
T 3lq1_A 10 LTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANY 89 (578)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhh
Confidence 4579999999999999999999999999999999976 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHH-------HHHHHHHHHhhcCCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIG-------QHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~-------~~i~~A~~~A~~~~~G 417 (1065)
++||++|+.+++|||+|||++|.+.++++++|++||.++|+++|||+++++++++++ +.+++|++.|.++|||
T Consensus 90 ~~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~G 169 (578)
T 3lq1_A 90 FPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRG 169 (578)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred hHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999999999999999999999999999999998765 4899999999999999
Q ss_pred EEEEecChhhhhhc-cccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 418 VSYLDFPANLLAQR-INQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 418 PV~L~iP~Dv~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
||||+||.|++..+ ....... . .+|.. .+. ........++++.+++++++|
T Consensus 170 PV~l~iP~d~~~~~~~~~~~~~---~------~~~~~--------------~~~-----~~~~~~~~~~~~~i~~~~~~L 221 (578)
T 3lq1_A 170 PVHLNFPLREPLVPILEPSPFT---A------TGKKH--------------HHV-----HIYYTHEVLDDSSIQKMVTEC 221 (578)
T ss_dssp CEEEEEECCSCCCCCCSSCCC----------------------------------------CCEEEEECHHHHHHHHHHT
T ss_pred cEEEECccCCCCCCCcccchhc---c------cCccc--------------ccc-----ccccCccCCChHHHHHHHHHh
Confidence 99999999875543 1111000 0 00000 000 001112245788899999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC-CCCCCCCCCcccccHH-------HHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM-GKGVVPDAHPNCVSAA-------RTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~-gkg~v~~~hpl~lg~~-------~~~al~~aDlVI~iG~~ 568 (1065)
++ |||+|++|.++.. .+.+++++|+|++|+||+++++ +++.+|++||+++|.. ....+.+||+||.+|++
T Consensus 222 ~~-~rPvIl~G~g~~~-~~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~ 299 (578)
T 3lq1_A 222 TG-KKGVFVVGPIDKK-ELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSM 299 (578)
T ss_dssp TT-SCEEEEECSCCCT-TCHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSC
T ss_pred cc-CCeEEEECCCCCh-HHHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCc
Confidence 99 9999999999875 4568999999999999999976 5899999999998842 22346799999999998
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+.++.+..|.+. .++.++||||+|+..+++.+.+++.+++|++.+|++|.+.+... ....+|.++|++..+..
T Consensus 300 ~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~------~~~~~w~~~~~~~~~~~ 372 (578)
T 3lq1_A 300 PVSKPLKNWLEQ-LSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDD------AKDAAWLNGWTSYNKVA 372 (578)
T ss_dssp CSCHHHHHHHHH-CCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSCST------TCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHhc-CCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhccCC------CCcHHHHHHHHHHHHHH
Confidence 876555555432 25678999999999999999999999999999999999877521 11467988887665544
Q ss_pred hh-cccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEE
Q psy14416 649 RQ-VKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 727 (1065)
Q Consensus 649 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~il 727 (1065)
++ ...+. ....++ + +..+++ .|.+.+|++++|
T Consensus 373 ~~~~~~~~----------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv 405 (578)
T 3lq1_A 373 REIVLAEM----------------------------ANTTIL-----E---EGKIVA-----------ELRRLLPDKAGL 405 (578)
T ss_dssp HHHHHHHS----------------------------CC---------C---TTHHHH-----------HHHHHSCSEEEE
T ss_pred hHHHHHhh----------------------------hcCCCC-----C---HHHHHH-----------HHHHhCCCCCeE
Confidence 33 21111 112345 6 778899 999999999999
Q ss_pred EECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCc
Q psy14416 728 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 807 (1065)
Q Consensus 728 v~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1065)
+.++|+..+|..+++.. .+..
T Consensus 406 ~~~~~~~~~~~~~~~~~----------~~~~------------------------------------------------- 426 (578)
T 3lq1_A 406 FIGNSMPIRDVDTYFSQ----------IDKK------------------------------------------------- 426 (578)
T ss_dssp EECSSHHHHHHHHHCCC----------CSSE-------------------------------------------------
T ss_pred EEeCccHHHHHHHhhcc----------cCCC-------------------------------------------------
Confidence 99997655543322210 0000
Q ss_pred ccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecccc
Q psy14416 808 TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEV 887 (1065)
Q Consensus 808 g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 887 (1065)
..++.|+|-.|.. .++++++ |++ .
T Consensus 427 -------------------~~~~~~~G~~G~~-----------------------------g~l~~Ai--Gaa--~---- 450 (578)
T 3lq1_A 427 -------------------IKMLANRGANGID-----------------------------GVVSSAL--GAS--V---- 450 (578)
T ss_dssp -------------------EEEECCCSSCCSS-----------------------------SHHHHHH--HHT--T----
T ss_pred -------------------ceEEeCCCccccc-----------------------------cHHHHHH--HHh--c----
Confidence 0112222211111 1223332 332 2
Q ss_pred ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEc
Q psy14416 888 TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVN 967 (1065)
Q Consensus 888 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n 967 (1065)
|+++|+ +++|||+| +|+.++|+++ +++++|+++||+|
T Consensus 451 ----~~~~vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~l~~~ivv~N 487 (578)
T 3lq1_A 451 ----VFQPMF---------------------------------LLIGDLSF-YHDMNGLLMA-----KKYKMNLTIVIVN 487 (578)
T ss_dssp ----TSSSEE---------------------------------EEEEHHHH-HHTGGGGHHH-----HHTTCCEEEEEEC
T ss_pred ----CCCCEE---------------------------------EEEchHHH-HhhHHHHHhh-----ccCCCCeEEEEEE
Confidence 678899 99999999 9999999999 9999999999999
Q ss_pred CCc--ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEe
Q psy14416 968 NNG--IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 968 n~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 1045 (1065)
|+| +++.+++..... .+...+.+.+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+
T Consensus 488 N~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~~ 558 (578)
T 3lq1_A 488 NDGGGIFSFLPQANEPK--------YFESLFGTSTELDFRFAAAFYDADYHEAKSVDELEEAIDKASYH-KGLDIIEVKT 558 (578)
T ss_dssp CC---------------------------------CCCTHHHHHHTTCEEEECCSHHHHHHHHHHHTTS-SSEEEEEEC-
T ss_pred CCcCccccccccccccc--------hhhhhccCCCCCCHHHHHHHcCCceEecCCHHHHHHHHHHHHhC-CCCEEEEEEC
Confidence 987 333222211000 01112334467999999999999999999999999999999986 8999999999
Q ss_pred CCCCCCCcch
Q psy14416 1046 NPSADRKPQN 1055 (1065)
Q Consensus 1046 ~~~~~~~~~~ 1055 (1065)
+++++..+++
T Consensus 559 ~~~~~~~~~~ 568 (578)
T 3lq1_A 559 NRHENKANHQ 568 (578)
T ss_dssp ----------
T ss_pred CccccHHHHH
Confidence 9999887754
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-75 Score=706.57 Aligned_cols=527 Identities=19% Similarity=0.249 Sum_probs=423.8
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||+++||+||+++++|++++.+++|++|.++||++|+|||+||||+||||+||++|||||++|+++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~ 90 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLIT 90 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHH
Confidence 68999999999999999999999999999999997778999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+||.|
T Consensus 91 ~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 91 GMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q psy14416 427 LLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVII 506 (1065)
Q Consensus 427 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIlv 506 (1065)
++.++.+..... .. .......++.+.+++++++|++||||+|++
T Consensus 171 v~~~~~~~~~~~---~~---------------------------------~~~~~~~~~~~~i~~~~~~l~~a~rpvil~ 214 (566)
T 1ozh_A 171 VVDGPVSGKVLP---AS---------------------------------GAPQMGAAPDDAIDQVAKLIAQAKNPIFLL 214 (566)
T ss_dssp HHHSCEEECCCC---CC---------------------------------CSCEECCSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhccccccccc---cc---------------------------------cccCCCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 987765422110 00 001112467788999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCc-ccccH-------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 507 GKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP-NCVSA-------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 507 G~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hp-l~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
|.++..+++.+++++|+|++|+||++++++|+.++++|| +++|. ..++++++||+||.+|+.+.++....|.
T Consensus 215 G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~ 294 (566)
T 1ozh_A 215 GLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWN 294 (566)
T ss_dssp CGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCGGGSCGGGTC
T ss_pred CCCcccccHHHHHHHHHHHHCCCEEEccccCCcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCCCcCCccccC
Confidence 999988888899999999999999999999999999999 88762 3466788999999999976554444443
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
.++.++||||.|+.++++++.+++.+++|++.+|++|.+.++.. .....|.+++++..+.......+.
T Consensus 295 ---~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~--- 362 (566)
T 1ozh_A 295 ---SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHR------LVLSPQAAEILRDRQHQRELLDRR--- 362 (566)
T ss_dssp ---CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCCSC------CCCCHHHHHHHHHHHHHHHHHHC----
T ss_pred ---CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcccc------CCcHHHHHHHHHHHHHhHhhhhhc---
Confidence 23678999999999999999999999999999999998877521 123568887776554433221110
Q ss_pred hhccCCccCCCCccccccccccCccccccc-eEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCcc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 737 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-l~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~ 737 (1065)
.. ....| + + +..+++ .|.+.+|++.+++.|+|.+..|
T Consensus 363 ----------------~~-------~~~~~~l-----~---~~~v~~-----------~l~~~l~~~~iv~~d~G~~~~~ 400 (566)
T 1ozh_A 363 ----------------GA-------QLNQFAL-----H---PLRIVR-----------AMQDIVNSDVTLTVDMGSFHIW 400 (566)
T ss_dssp ----------------CC-------CCCCSSB-----C---HHHHHH-----------HHHHHCCTTEEEEECSSHHHHH
T ss_pred ----------------cc-------cCCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEEEcCcHHHHH
Confidence 00 01224 5 6 778888 9999999999999999976556
Q ss_pred cccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccccc
Q psy14416 738 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 817 (1065)
Q Consensus 738 ~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 817 (1065)
..+++.. . -|.+ +
T Consensus 401 ~~~~~~~-----~----~~~~---------------------------------------------~------------- 413 (566)
T 1ozh_A 401 IARYLYT-----F----RARQ---------------------------------------------V------------- 413 (566)
T ss_dssp HHHTGGG-----C----CCSE---------------------------------------------E-------------
T ss_pred HHHhccc-----C----CCCe---------------------------------------------E-------------
Confidence 4433221 0 0000 0
Q ss_pred ceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEE
Q psy14416 818 EVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 897 (1065)
+. ++-+|+| |+++++++ |++++. |+++|+
T Consensus 414 ------------~~-~~g~g~m----------------------------G~~l~~Ai--Gaala~--------~~~~vv 442 (566)
T 1ozh_A 414 ------------MI-SNGQQTM----------------------------GVALPWAI--GAWLVN--------PERKVV 442 (566)
T ss_dssp ------------EC-CCTTCCT----------------------------TCHHHHHH--HHHHHS--------TTSEEE
T ss_pred ------------Ee-CCCcccc----------------------------cchHHHHH--HHHHhC--------CCCCEE
Confidence 00 1113444 88888877 888887 889999
Q ss_pred EccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch
Q psy14416 898 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE 977 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~ 977 (1065)
+++|||+| +|+.++++++ .++++|+++||+||+| |+.+..
T Consensus 443 ---------------------------------~i~GDG~~-~~~~~~L~ta-----~~~~l~~~ivv~nN~~-~~~~~~ 482 (566)
T 1ozh_A 443 ---------------------------------SVSGDGGF-LQSSMELETA-----VRLKANVLHLIWVDNG-YNMVAI 482 (566)
T ss_dssp ---------------------------------EEEEHHHH-HHHTTHHHHH-----HHHTCCEEEEEEECSB-CHHHHH
T ss_pred ---------------------------------EEEcChHH-hccHHHHHHH-----HHhCCCcEEEEEECCc-hhHHHH
Confidence 99999999 9999999999 9999999999999987 222211
Q ss_pred hhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 978 ATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
. ........+ ....+++||.++|++||+++++|++.+||+++++++++. ++|+||||.++++++
T Consensus 483 ~--~~~~~~~~~------~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~~~~~~~ 546 (566)
T 1ozh_A 483 Q--EEKKYQRLS------GVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDV-DGPAVVAIPVDYRDN 546 (566)
T ss_dssp H--HHHHHSSCC------SCBCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHHHHHS-SSCEEEEEEBCCTTH
T ss_pred H--HHHhcCCCc------cCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEEEEeCCCcC
Confidence 1 111111111 123456899999999999999999999999999999986 899999999998876
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-75 Score=715.84 Aligned_cols=541 Identities=20% Similarity=0.295 Sum_probs=427.9
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||||||++|
T Consensus 80 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N 159 (677)
T 1t9b_A 80 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 159 (677)
T ss_dssp TTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHH
Confidence 46799999999999999999999999999999999976 46999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 160 ~~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~l 239 (677)
T 1t9b_A 160 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDL 239 (677)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++..++..+... .... +..+++ .........++.+.+++++++|++||||+
T Consensus 240 P~Dv~~~~~~~p~~~-~~~~--~~~~~~-----------------------~~~~~~~~~~~~~~i~~a~~~L~~AkrPv 293 (677)
T 1t9b_A 240 PKDVTAAILRNPIPT-KTTL--PSNALN-----------------------QLTSRAQDEFVMQSINKAADLINLAKKPV 293 (677)
T ss_dssp EHHHHHSBCCSCBC----------------------------------------------CHHHHHHHHHHHHHTCSSEE
T ss_pred CHHHhhhhccccccc-cccc--cccccc-----------------------CCCccccccCCHHHHHHHHHHHHhCCCeE
Confidence 999987765421100 0000 000000 00000111234678999999999999999
Q ss_pred EEEccCCCch-hHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 504 VIIGKGAAYS-QAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 504 IlvG~g~~~~-~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
|++|.++..+ .+.++|++|||++|+||+++.++||.++++||+++|. ..+.++++||+||.+|+++++..+.
T Consensus 294 Il~G~g~~~~~~~~~~l~~lae~~~~PV~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~ 373 (677)
T 1t9b_A 294 LYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTG 373 (677)
T ss_dssp EEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTSC
T ss_pred EEECcccccCchhHHHHHHHHHHhCCCeeeccccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCccccc
Confidence 9999998655 4678999999999999999999999999999997662 4566788999999999999875543
Q ss_pred CCCccccCCCe---------EEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHH
Q psy14416 576 GRAPRFKSNVK---------IIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 646 (1065)
Q Consensus 576 g~~~~~~~~~~---------iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~ 646 (1065)
....|.++.+ +||||.|+..+++.+..++.+++|+..+|++|.+.+.. ...+..|.+.+++.++
T Consensus 374 -~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~------~~~~~~w~~~~~~~~~ 446 (677)
T 1t9b_A 374 -NISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFP------VKERSEWFAQINKWKK 446 (677)
T ss_dssp -SGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCC------CCCCHHHHHHHHHHHH
T ss_pred -CccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhhc------cccchHHHHHHHHHHH
Confidence 3333444445 99999999999999999999999999999999888752 1234678887776544
Q ss_pred hhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcC---CC
Q psy14416 647 TNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVL---PV 723 (1065)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~L---P~ 723 (1065)
......... ....++ + +..+++ .|.+.+ |+
T Consensus 447 ~~~~~~~~~----------------------------~~~~~l-----~---~~~v~~-----------~L~~~l~~~~~ 479 (677)
T 1t9b_A 447 EYPYAYMEE----------------------------TPGSKI-----K---PQTVIK-----------KLSKVANDTGR 479 (677)
T ss_dssp HSCCCCCCC----------------------------CTTCCB-----C---HHHHHH-----------HHHHHHHTTCS
T ss_pred hcccccccc----------------------------cCCCCc-----C---HHHHHH-----------HHHHHhhcCCC
Confidence 332111000 012245 6 777888 898888 77
Q ss_pred cEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCccc
Q psy14416 724 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 803 (1065)
Q Consensus 724 d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1065)
+.++..|.|++..|..+++.. ..| +.
T Consensus 480 ~~iv~~~vg~~~~~~~~~~~~-----------------------------------------------~~p-------~~ 505 (677)
T 1t9b_A 480 HVIVTTGVGQHQMWAAQHWTW-----------------------------------------------RNP-------HT 505 (677)
T ss_dssp CEEEEECSSHHHHHHHHHSCC-----------------------------------------------CST-------TC
T ss_pred CEEEEeCCchHHHHHHHhccc-----------------------------------------------CCC-------Ce
Confidence 888888887655554322210 000 01
Q ss_pred ccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhhee
Q psy14416 804 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 883 (1065)
Q Consensus 804 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 883 (1065)
++ ++|.+|+| |+++++++ |++++.
T Consensus 506 ~~--------------------------~sg~~G~m----------------------------G~~lpaAi--GaalA~ 529 (677)
T 1t9b_A 506 FI--------------------------TSGGLGTM----------------------------GYGLPAAI--GAQVAK 529 (677)
T ss_dssp EE--------------------------CCCSSCCT----------------------------TCHHHHHH--HHHHHC
T ss_pred EE--------------------------eCCCcchh----------------------------hchHHHHH--HHHHhC
Confidence 11 24556777 88888888 999988
Q ss_pred ccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEE
Q psy14416 884 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 963 (1065)
Q Consensus 884 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1065)
|+++|| +++|||+| +|+.++|+++ +++++|++|
T Consensus 530 --------p~~~Vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~l~v~i 562 (677)
T 1t9b_A 530 --------PESLVI---------------------------------DIDGDASF-NMTLTELSSA-----VQAGTPVKI 562 (677)
T ss_dssp --------TTSEEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHHTCCCEE
T ss_pred --------CCCeEE---------------------------------EEEeehHH-hccHHHHHHH-----HHhCCCeEE
Confidence 899999 99999999 9999999999 999999999
Q ss_pred EEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEE
Q psy14416 964 VIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINI 1043 (1065)
Q Consensus 964 ~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~ 1043 (1065)
||+||+| |+.+... ........+ . ....+++||.++|++||+++++|++.+||+++|+++++. ++|+||||
T Consensus 563 vV~NN~~-~g~~~~~--~~~~~~~~~---~--~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~gp~lIev 633 (677)
T 1t9b_A 563 LILNNEE-QGMVTQW--QSLFYEHRY---S--HTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVST-KGPVLLEV 633 (677)
T ss_dssp EEEECSS-CHHHHHH--HHHHSTTCC---C--SCCCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHC-SSCEEEEE
T ss_pred EEEeCCC-chhhhhh--hhhhcCCCc---c--cCcCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHHC-CCcEEEEE
Confidence 9999988 3322111 111111111 0 112356899999999999999999999999999999986 89999999
Q ss_pred EeCCCCCC
Q psy14416 1044 LINPSADR 1051 (1065)
Q Consensus 1044 ~~~~~~~~ 1051 (1065)
.+++.++.
T Consensus 634 ~~~~~~~~ 641 (677)
T 1t9b_A 634 EVDKKVPV 641 (677)
T ss_dssp EBCSSCCC
T ss_pred EecCCccc
Confidence 99988764
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-74 Score=706.28 Aligned_cols=541 Identities=20% Similarity=0.240 Sum_probs=432.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
..++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||+|||++
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~ 81 (589)
T 2pgn_A 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNL 81 (589)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGG
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHH
Confidence 35789999999999999999999999999999999976 4699999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCC-CCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEE
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIG-GFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYL 421 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~g-a~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L 421 (1065)
|+++||++|+.+++|||+|||++|.++++++ ++|++||.+ |+++|||++++++++++++.+++|++.|.++|||||||
T Consensus 82 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 160 (589)
T 2pgn_A 82 LLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYV 160 (589)
T ss_dssp GCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 9999999999999999999999999999999 999999999 99999999999999999999999999999999999999
Q ss_pred ecChhhhhhccccc-cCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCC
Q psy14416 422 DFPANLLAQRINQS-ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 422 ~iP~Dv~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~Ak 500 (1065)
+||.|++.++.+.. ... .+. | ..+.....++ +.+++++++|+++|
T Consensus 161 ~iP~dv~~~~~~~~~~~~-~~~-------~-------------------------~~~~~~~~~~-~~v~~~~~~l~~a~ 206 (589)
T 2pgn_A 161 DIPFDLTADQIDDKALVP-RGA-------T-------------------------RAKSVLHAPN-EDVREAAAQLVAAK 206 (589)
T ss_dssp EEETHHHHCEEECTTTSC-CCC-------C-------------------------CCCCCCCCCH-HHHHHHHHHHHHCS
T ss_pred EeCHhhhhcccccccccc-ccc-------c-------------------------cCCccCCChH-HHHHHHHHHHHhCC
Confidence 99999987655421 110 000 0 0000002234 78999999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCcccccc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWIL 573 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~ 573 (1065)
||+|++|.++.++++.+++++|+|++|+||++++++|+.++++||+++|. ..++++++||+||.+|+++.++.
T Consensus 207 rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~ 286 (589)
T 2pgn_A 207 NPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWG 286 (589)
T ss_dssp SEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTT
T ss_pred CeEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccccc
Confidence 99999999887777789999999999999999999999999999998872 35677889999999999998876
Q ss_pred ccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhccccc-C-CCCCCCchHH--HHHHH-HHHhh
Q psy14416 574 HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQR-N-WSFSATSPWW--QELKL-KCQTN 648 (1065)
Q Consensus 574 ~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~-~-~~~~~~~~W~--~~~~~-~~~~~ 648 (1065)
+. | ..+.++.++||||.|+.++++++.+++.+++|+..+|++|.+.++.... . ........|. +.+++ ..+ .
T Consensus 287 ~~-~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~ 363 (589)
T 2pgn_A 287 IA-Q-GYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-W 363 (589)
T ss_dssp TT-T-TTTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-H
T ss_pred cc-c-cccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-H
Confidence 55 4 3455677899999999999999999999999999999999887752100 0 0001234687 66554 322 1
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
.+... . ....++ + +..+++ .|.+.+|++++++
T Consensus 364 ~~~~~-~----------------------------~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iv~ 395 (589)
T 2pgn_A 364 VREQE-S----------------------------GDGMPA-----S---MFRAMA-----------EVRKVQRPEDIIV 395 (589)
T ss_dssp HHHHT-C----------------------------CCCSSC-----C---HHHHHH-----------HHHHTCCTTCEEE
T ss_pred Hhhhc-c----------------------------CCCCCc-----C---HHHHHH-----------HHHHhCCCCCEEE
Confidence 10000 0 012245 6 778888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|+|.+..|..+++.. ..| +.
T Consensus 396 ~d~g~~~~~~~~~~~~-----------------------------------------------~~~-------~~----- 416 (589)
T 2pgn_A 396 TDIGNHTLPMFGGAIL-----------------------------------------------QRP-------RR----- 416 (589)
T ss_dssp ECSSTTHHHHHHHCCC-----------------------------------------------SST-------TC-----
T ss_pred EcCchHHHHHHHhccc-----------------------------------------------CCC-------Cc-----
Confidence 9999876665433221 000 00
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
++.| +-+|+| |+++++++ |++++.
T Consensus 417 --------------------~~~~-~g~g~m----------------------------G~~l~~Ai--Gaala~----- 440 (589)
T 2pgn_A 417 --------------------LVTS-MAEGIL----------------------------GCGFPMAL--GAQLAE----- 440 (589)
T ss_dssp --------------------EESC-TTTCCT----------------------------TCHHHHHH--HHHHHC-----
T ss_pred --------------------EECC-CCcchh----------------------------hhHHHHHH--HHHHhC-----
Confidence 1111 113455 88888877 888888
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|+ +++|||+| +|+.++++++ +++++|+++||+||
T Consensus 441 ---~~~~vv---------------------------------~i~GDG~~-~~~~~~L~ta-----~~~~l~~~ivv~nN 478 (589)
T 2pgn_A 441 ---PNSRVF---------------------------------LGTGDGAL-YYHFNEFRVA-----VEHKLPVITMVFTN 478 (589)
T ss_dssp ---TTSCEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEEC
T ss_pred ---CCCcEE---------------------------------EEEeeHHH-HhhHHHHHHH-----HHhCCCeEEEEEEC
Confidence 888999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
+| |+.+... ......... . .. ..++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++.
T Consensus 479 ~~-~~~~~~~--~~~~~~~~~---~--~~-~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~~~~~ 548 (589)
T 2pgn_A 479 ES-YGANWTL--MNHQFGQNN---W--TE-FMNPDWVGIAKAFGAYGESVRETGDIAGALQRAIDS-GKPALIEIPVSKT 548 (589)
T ss_dssp SB-CHHHHHH--HHHHHSSCC---S--CB-CCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHHH-CSCEEEEEECCSS
T ss_pred CC-cccchHH--HHhhcCCCc---c--cc-CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 87 3322211 111111111 1 11 236899999999999999999999999999999986 8999999999999
Q ss_pred CCCCcchhhh
Q psy14416 1049 ADRKPQNFSW 1058 (1065)
Q Consensus 1049 ~~~~~~~~~~ 1058 (1065)
++..+....|
T Consensus 549 ~~~~~~~~g~ 558 (589)
T 2pgn_A 549 QGLASDPVGG 558 (589)
T ss_dssp SSTTTCCSSC
T ss_pred CCcCccCCCc
Confidence 9887754443
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-74 Score=698.16 Aligned_cols=540 Identities=24% Similarity=0.343 Sum_probs=428.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
..++++++|++.|+++||+++||+||+++++|++++.+++|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA 81 (563)
T ss_dssp CEEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence 45789999999999999999999999999999999976679999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++||++|+.+++|||+|||++|.++++++++|+ +||.++|+++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~i 161 (563)
T 2uz1_A 82 VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDL 161 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++.++....... .|.. ........++.+.+++++++|+++|||+
T Consensus 162 P~dv~~~~~~~~~~~-~~~~--------------------------------~~~~~~~~~~~~~v~~~~~~l~~a~rpv 208 (563)
T 2uz1_A 162 PWDILMNQIDEDSVI-IPDL--------------------------------VLSAHGARPDPADLDQALALLRKAERPV 208 (563)
T ss_dssp EHHHHHCEEEGGGSC-CCCC--------------------------------CCCSSCCBCCHHHHHHHHHHHHHCSSEE
T ss_pred CHHHhhhhccccccc-cccc--------------------------------ccCCCCCCCCHHHHHHHHHHHHcCCCcE
Confidence 999665442211100 0000 0001123467888999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCC-CcccccHH------HHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA-HPNCVSAA------RTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~-hpl~lg~~------~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++.++++.+++++|+|++|+||++++++||.++++ ||+++|.. .++ +++||+||.+|++++++.+..
T Consensus 209 il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~~p~~~G~~g~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~ 287 (563)
T 2uz1_A 209 IVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKA-DAAPDLVLMLGARFGLNTGHG 287 (563)
T ss_dssp EEECHHHHHHTCHHHHHHHHHHHCCCEEECGGGGGGGTTSCGGGEEEEGGGGGGTTTT-TCCCSEEEEESCCSSGGGTTT
T ss_pred EEECCccccccHHHHHHHHHHHhCCcEEEcCcccCcCCCCCChhhcCCCCCCCHHHHh-hcCCCEEEEECCCCccccccc
Confidence 9999998877888999999999999999999999999999 99998632 234 789999999999999877654
Q ss_pred CCccccC-CCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHH-HHHhhhhcccc
Q psy14416 577 RAPRFKS-NVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKL-KCQTNRQVKLP 654 (1065)
Q Consensus 577 ~~~~~~~-~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~-~~~~~~~~~~~ 654 (1065)
|. .+.+ +.++||||.|+.++++++..++.+++|++.+|++|.+.++... . ......|.+++++ .++...+....
T Consensus 288 ~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (563)
T 2uz1_A 288 SG-QLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATAQDA--A-WPDRGDWCAKVTDLAQERYASIAAK 363 (563)
T ss_dssp SC-SSSCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHTTSC--C-CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-ccCCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhhhcc--c-ccCcHHHHHHHHHHHHHHhHhhhhc
Confidence 43 3444 6899999999999999999999999999999999998775210 0 0123568776665 43332211100
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
.. ... ++ + +..+++ .|.+.+|++++++.|.|.+
T Consensus 364 ~~---------------------------~~~-~~-----~---~~~~~~-----------~l~~~l~~~~iv~~d~G~~ 396 (563)
T 2uz1_A 364 SS---------------------------SEH-AL-----H---PFHASQ-----------VIAKHVDAGVTVVADGALT 396 (563)
T ss_dssp CC---------------------------CSS-SC-----C---HHHHHH-----------HHHTTCSTTEEEEECSSHH
T ss_pred cc---------------------------cCC-Cc-----C---HHHHHH-----------HHHHhCCCCcEEEEcCchH
Confidence 00 011 45 6 778888 9999999999999999876
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
..|..+++.. . -|. .+++
T Consensus 397 ~~~~~~~~~~-----~----~~~---------------------------------------------~~~~-------- 414 (563)
T 2uz1_A 397 YLWLSEVMSR-----V----KPG---------------------------------------------GFLC-------- 414 (563)
T ss_dssp HHHHHHHHTT-----S----CCS---------------------------------------------EEEC--------
T ss_pred HHHHHHhccc-----c----CCC---------------------------------------------eEEC--------
Confidence 6665443321 0 000 0000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
++-+|+| |+++++++ |++++.+ . |++
T Consensus 415 ------------------~~g~g~~----------------------------G~~l~~Ai--Gaa~a~~--~----~~~ 440 (563)
T 2uz1_A 415 ------------------HGYLGSM----------------------------GVGFGTAL--GAQVADL--E----AGR 440 (563)
T ss_dssp ------------------CCTTCCT----------------------------TTHHHHHH--HHHHHHH--H----HTC
T ss_pred ------------------CCCCccc----------------------------cChHHHHH--HHHHHhh--C----CCC
Confidence 1223444 77777777 8887753 1 678
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCC
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 974 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~ 974 (1065)
+|+ +++|||+| +|+.++++++ .++++|+++||+||+| |+.
T Consensus 441 ~vv---------------------------------~i~GDG~~-~~~~~~L~ta-----~~~~l~~~ivv~nN~~-~~~ 480 (563)
T 2uz1_A 441 RTI---------------------------------LVTGDGSV-GYSIGEFDTL-----VRKQLPLIVIIMNNQS-WGA 480 (563)
T ss_dssp EEE---------------------------------EEEEHHHH-GGGTTHHHHH-----HHHTCCCEEEEEECSB-CHH
T ss_pred eEE---------------------------------EEEccHHH-hCCHHHHHHH-----HHhCCCeEEEEEeCCc-chH
Confidence 899 99999999 9999999999 9999999999999988 332
Q ss_pred CchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 975 FDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
.... ....+ +. .. ......+.+||.++|++||+++++|++.+||+++++++++. ++|+||||.+++ ++..|
T Consensus 481 ~~~~-~~~~~--~~-~~--~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~liev~~~~-~~~~p 551 (563)
T 2uz1_A 481 TLHF-QQLAV--GP-NR--VTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQALAH-NRPACINVAVAL-DPIPP 551 (563)
T ss_dssp HHHH-HHHHT--CT-TC--CCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHS-SSCEEEEEECCS-CCCCH
T ss_pred HHHH-HHHhc--CC-Cc--ccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHC-CCCEEEEEEecc-ccCCc
Confidence 2211 11111 10 00 01112256899999999999999999999999999999986 899999999994 34444
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-75 Score=710.20 Aligned_cols=541 Identities=13% Similarity=0.116 Sum_probs=421.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 30 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~ 109 (604)
T 2x7j_A 30 ITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANF 109 (604)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHH
Confidence 4689999999999999999999999999999999976 479999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh-------HHHHHHHHHHHhhcCCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL-------IGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~-------i~~~i~~A~~~A~~~~~G 417 (1065)
++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||+++++++++ +++.+++|++.|.+++||
T Consensus 110 ~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~G 189 (604)
T 2x7j_A 110 YPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMG 189 (604)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred EEEEecChhhhhhccccccCCC--CCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHH
Q psy14416 418 VSYLDFPANLLAQRINQSALVP--TPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495 (1065)
Q Consensus 418 PV~L~iP~Dv~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~ 495 (1065)
||||+||.|++..+.......+ ..... + ...+..+.++.+.+++++++
T Consensus 190 PV~l~iP~d~~~~~~~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~~~~i~~~~~~ 239 (604)
T 2x7j_A 190 PVHVNVPLREPLMPDLSDEPFGRMRTGRH------V------------------------SVKTGTQSVDRESLSDVAEM 239 (604)
T ss_dssp EEEEEEECCSCCCCCTTSCTTCCSSSSCS------S------------------------EEECCEEECCTGGGHHHHHH
T ss_pred cEEEEcccCccCCCccccccccccccccc------c------------------------cccccCccCChhhHHHHHHH
Confidence 9999999998654432111000 00000 0 00001122455678999999
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCC-CCCCcccccHH--------HHhhhcCCCEEEEeC
Q psy14416 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVV-PDAHPNCVSAA--------RTHALQNADLVLLLG 566 (1065)
Q Consensus 496 L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v-~~~hpl~lg~~--------~~~al~~aDlVI~iG 566 (1065)
|++||||+|++|.++ .+++.+++++|||++|+||++++++++.+ +++||+++|.. ..+.++ +|+||.+|
T Consensus 240 l~~A~rPvIl~G~g~-~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG 317 (604)
T 2x7j_A 240 LAEAEKGMIVCGELH-SDADKENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFG 317 (604)
T ss_dssp HHHCSSEEEEECCCC-CHHHHHHHHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEES
T ss_pred HhhcCCeEEEECCCC-cHHHHHHHHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEEC
Confidence 999999999999998 56778999999999999999999988766 78899987732 234454 89999999
Q ss_pred CccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHH
Q psy14416 567 ARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 646 (1065)
Q Consensus 567 ~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~ 646 (1065)
+++.++.+..|.+.. ++.++||||.|+.++++++.+++.+++|++.+|++|.+.++. ......|.++|++..+
T Consensus 318 ~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~------~~~~~~w~~~~~~~~~ 390 (604)
T 2x7j_A 318 PMPVSKPVFLWLKDD-PTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTA------ATRSSEWLEKWQFVNG 390 (604)
T ss_dssp SCCSCHHHHHHHHHC-TTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSCS------SCCCCHHHHHHHHHHH
T ss_pred CcCccHHHHHHHhhC-CCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhcC------CCCcHHHHHHHHHHHH
Confidence 999877655554322 256899999999999999999999999999999999887630 0123578877765544
Q ss_pred hhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEE
Q psy14416 647 TNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 726 (1065)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~i 726 (1065)
..++...+. ....++ + +..+++ .|.+.+|++++
T Consensus 391 ~~~~~~~~~----------------------------~~~~~~-----~---~~~~~~-----------~L~~~lp~d~i 423 (604)
T 2x7j_A 391 RFREHLQTI----------------------------SSEDVS-----F---EGNLYR-----------ILQHLVPENSS 423 (604)
T ss_dssp HHHHHHHTS----------------------------CCCCTT-----S---HHHHHH-----------HHHHHSCTTCE
T ss_pred HHHHHHHhh----------------------------cccCCC-----C---HHHHHH-----------HHHHhCCCCCE
Confidence 333221111 011245 6 778888 99999999999
Q ss_pred EEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccC
Q psy14416 727 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 806 (1065)
Q Consensus 727 lv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1065)
|+.|+|+..+|..+++.. .. -|.
T Consensus 424 v~~d~g~~~~~~~~~~~~-----~~---~~~------------------------------------------------- 446 (604)
T 2x7j_A 424 LFVGNSMPIRDVDTFFEK-----QD---RPF------------------------------------------------- 446 (604)
T ss_dssp EEECTTHHHHHHHHHCCC-----BS---CCC-------------------------------------------------
T ss_pred EEEECCHHHHHHHHhccc-----CC---CCc-------------------------------------------------
Confidence 999998766664322210 00 000
Q ss_pred cccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccc
Q psy14416 807 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 886 (1065)
Q Consensus 807 ~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 886 (1065)
.++.|.| .|+| |.++|+++ |++++
T Consensus 447 ---------------------~~~~~~G-~~~i----------------------------g~~l~~Ai--Gaala---- 470 (604)
T 2x7j_A 447 ---------------------RIYSNRG-ANGI----------------------------DGVVSSAM--GVCEG---- 470 (604)
T ss_dssp ---------------------EEECCTT-TCCS----------------------------SSHHHHHH--HHHHH----
T ss_pred ---------------------eEEeCCC-cCCc----------------------------CcHHHHHH--HHHhc----
Confidence 0111222 2233 55556555 67766
Q ss_pred cccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEE
Q psy14416 887 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 966 (1065)
Q Consensus 887 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 966 (1065)
++++|+ +++|||+| +|+.++++++ +++++|++|||+
T Consensus 471 -----~~~~vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~lp~~ivv~ 506 (604)
T 2x7j_A 471 -----TKAPVT---------------------------------LVIGDLSF-YHDLNGLLAA-----KKLGIPLTVILV 506 (604)
T ss_dssp -----HTSCEE---------------------------------EEEEHHHH-HHTGGGGHHH-----HHHCCCEEEEEE
T ss_pred -----CCCcEE---------------------------------EEEccHHH-HhHHHHHHHh-----hhcCCCeEEEEE
Confidence 356788 99999999 9999999999 999999999999
Q ss_pred cCCc--ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEE
Q psy14416 967 NNNG--IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINIL 1044 (1065)
Q Consensus 967 nn~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 1044 (1065)
||+| +++.++.......++ ..+...+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.
T Consensus 507 NN~~~~i~~~~~~~q~~~~~~--------~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~liev~ 577 (604)
T 2x7j_A 507 NNDGGGIFSFLPQASEKTHFE--------DLFGTPTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQADK-PGLHLIEIK 577 (604)
T ss_dssp ECSSCGGGGGSGGGSCHHHHH--------HHTTCCCCCCTHHHHHHTTCEEECCSSHHHHHHHCCCCCSS-CCEEEEEEE
T ss_pred eCCCCcccccCCCCccchhhH--------hhccCCCCCCHHHHHHHcCCeEEecCCHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 9987 443333221111110 01223467999999999999999999999999999999876 899999999
Q ss_pred eCCCCCCCcchhhh
Q psy14416 1045 INPSADRKPQNFSW 1058 (1065)
Q Consensus 1045 ~~~~~~~~~~~~~~ 1058 (1065)
++++++.+..+..|
T Consensus 578 ~~~~~~~~~~~~~~ 591 (604)
T 2x7j_A 578 TDRQSRVQLHRDML 591 (604)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHH
Confidence 99877765544433
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-73 Score=698.76 Aligned_cols=541 Identities=19% Similarity=0.246 Sum_probs=429.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHh-CCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~t-gkpgv~~~tsGpG~~N 343 (1065)
.++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||||+| |+|+||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 4689999999999999999999999999999999976 5799999999999999999999999 8999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|||++|.++.+++++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++..+.+..... .. ..+...+.++.+.+++++++|+++|||+
T Consensus 186 P~d~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~i~~~~~~l~~a~rpv 230 (616)
T 2pan_A 186 PFDVQVAEIEFDPDM---YE--------------------------------PLPVYKPAASRMQIEKAVEMLIQAERPV 230 (616)
T ss_dssp EHHHHHSEEECCGGG---CC--------------------------------CCCCCCCCCCHHHHHHHHHHHHTCSSEE
T ss_pred chhhhhccccccccc---cc--------------------------------ccccCCCCCCHHHHHHHHHHHHcCCCeE
Confidence 999987654321000 00 0000112234788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCcccccccc
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGARLNWILHF 575 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~~~~~~~~ 575 (1065)
|++|.++.++.+.+++++|+|++|+||++++++||.++++||+++|. ..++++++||+||.+|+++++..+
T Consensus 231 il~G~g~~~~~a~~~l~~lae~~~~PV~~t~~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~- 309 (616)
T 2pan_A 231 IVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHT- 309 (616)
T ss_dssp EEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHHH-
T ss_pred EEECCCcCcccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCccccc-
Confidence 99999887777789999999999999999999999999999998872 556778999999999999986443
Q ss_pred CCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccch
Q psy14416 576 GRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPV 655 (1065)
Q Consensus 576 g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 655 (1065)
+++..+.++.++||||.|+.++++.+..++.+++|+..+|++|.+.+...... ....+.+|++.+++..+....... .
T Consensus 310 ~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 387 (616)
T 2pan_A 310 GSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKA-GRLPCRKEWVADCQQRKRTLLRKT-H 387 (616)
T ss_dssp SSHHHHHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHHHHHHHT-TCSCCCHHHHHHHHHHHTTSEECC-C
T ss_pred CcccccCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhhhcccc-cccccHHHHHHHHHHHHhhhhhcc-c
Confidence 33334556788999999999999999999999999999999998876421000 011235676655433322111000 0
Q ss_pred hhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcC
Q psy14416 656 ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYG 735 (1065)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~ 735 (1065)
....++ + +..++. .|.+.+|++.+++.|.|.+.
T Consensus 388 ----------------------------~~~~~~-----~---~~~~~~-----------~L~~~l~~~~ivv~d~G~~~ 420 (616)
T 2pan_A 388 ----------------------------FDNVPV-----K---PQRVYE-----------EMNKAFGRDVCYVTTIGLSQ 420 (616)
T ss_dssp ----------------------------CCCSSB-----C---HHHHHH-----------HHHHHSCTTEEEEECSSHHH
T ss_pred ----------------------------cCCCCc-----C---HHHHHH-----------HHHHhCCCCcEEEEcCcHHH
Confidence 012345 6 778888 99999999999999998655
Q ss_pred cccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCccccccccc
Q psy14416 736 GFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVE 815 (1065)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 815 (1065)
.|...++.. ..| +.++
T Consensus 421 ~~~~~~~~~-----------------------------------------------~~~-------~~~~---------- 436 (616)
T 2pan_A 421 IAAAQMLHV-----------------------------------------------FKD-------RHWI---------- 436 (616)
T ss_dssp HHHHHHCCC-----------------------------------------------CST-------TSEE----------
T ss_pred HHHHHhccc-----------------------------------------------CCC-------CeEE----------
Confidence 553321110 000 1122
Q ss_pred ccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEE
Q psy14416 816 SGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 895 (1065)
Q Consensus 816 ~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 895 (1065)
|+|.+|+| |+++++++ |++++. |+++
T Consensus 437 ----------------~~g~~G~~----------------------------G~~l~~Ai--Gaala~--------~~~~ 462 (616)
T 2pan_A 437 ----------------NCGQAGPL----------------------------GWTIPAAL--GVCAAD--------PKRN 462 (616)
T ss_dssp ----------------ECTTTCCT----------------------------TCHHHHHH--HHHHHC--------TTCE
T ss_pred ----------------cCCCcccc----------------------------cchHHHHH--HHHHhC--------CCCc
Confidence 23446666 88888888 888888 8899
Q ss_pred EEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCC
Q psy14416 896 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 975 (1065)
Q Consensus 896 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~ 975 (1065)
|+ +++|||+| +|+.++|+++ .++++|+++||+||+| |+.+
T Consensus 463 vv---------------------------------~i~GDGs~-~~~~~~L~ta-----~~~~l~~~ivv~NN~~-~~~~ 502 (616)
T 2pan_A 463 VV---------------------------------AISGDFDF-QFLIEELAVG-----AQFNIPYIHVLVNNAY-LGLI 502 (616)
T ss_dssp EE---------------------------------EEEEHHHH-HHTGGGHHHH-----HHTTCCCEEEEEECSB-CHHH
T ss_pred EE---------------------------------EEEcchhh-hCCHHHHHHH-----HHhCCCeEEEEEECCc-chHH
Confidence 99 99999999 9999999999 9999999999999987 3322
Q ss_pred chhhHhHHhhcCCc---ccCCCCCC---CCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHh----cCCCCEEEEEEe
Q psy14416 976 DEATYASIVESGEV---TTVSPPTS---LGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQ----TTTRPSLINILI 1045 (1065)
Q Consensus 976 ~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~----~~~~~~li~~~~ 1045 (1065)
... ..... +.. ..+..... ..+.+||.++|++||+++++|++.+||+++|+++++ . ++|+||||.+
T Consensus 503 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~gp~lIev~~ 578 (616)
T 2pan_A 503 RQS--QRAFD-MDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQY-RVPVVVEVIL 578 (616)
T ss_dssp HHH--GGGGT-CCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHH-CSCEEEEEEB
T ss_pred HHH--HHHhc-CCccccccccccccccCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccC-CCcEEEEEEe
Confidence 111 11110 100 00111111 123589999999999999999999999999999987 5 8999999999
Q ss_pred CCCCCCCc
Q psy14416 1046 NPSADRKP 1053 (1065)
Q Consensus 1046 ~~~~~~~~ 1053 (1065)
++.+..++
T Consensus 579 ~~~~~~~~ 586 (616)
T 2pan_A 579 ERVTNISM 586 (616)
T ss_dssp CSCCCCCB
T ss_pred cccccCCC
Confidence 99886554
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-73 Score=684.22 Aligned_cols=518 Identities=18% Similarity=0.256 Sum_probs=419.9
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFG 346 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~ 346 (1065)
++++++|++.|+++||+++||+||+++++|++++. ++|++|.++||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~ 80 (528)
T 1q6z_A 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMG 80 (528)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHH
Confidence 47999999999999999999999999999999994 57999999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEeecCCCccCCCCCCCCCc-cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 347 GMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 347 av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~-idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
||++|+.+++|||+|||++|.++++++++|+ +||.++|+++|||+.++++++++++.+++|++.|.+++||||||+||.
T Consensus 81 ~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (528)
T 1q6z_A 81 ALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPY 160 (528)
T ss_dssp HHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred HHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 9999999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q psy14416 426 NLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPLVI 505 (1065)
Q Consensus 426 Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPvIl 505 (1065)
|++..+.+..... .+. ........++.+.+++++++|+++|||+|+
T Consensus 161 d~~~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~~~i~~~~~~l~~a~rpvil 206 (528)
T 1q6z_A 161 DDWDKDADPQSHH-LFD---------------------------------RHVSSSVRLNDQDLDILVKALNSASNPAIV 206 (528)
T ss_dssp GGTTSBCCGGGGG-GTT---------------------------------CCCCCCCCCCHHHHHHHHHHHHHCSSCEEE
T ss_pred hhhhCcccccccc-ccc---------------------------------cCCCCCCCCCHHHHHHHHHHHhcCCCeEEE
Confidence 9987654321100 000 001112346788899999999999999999
Q ss_pred EccCCCchhHHHHHHHHHhhcCCCE-EecCCCCCCCCCCCcccccH------HHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 506 IGKGAAYSQAETELLSFVNSFNLPF-LPTPMGKGVVPDAHPNCVSA------ARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 506 vG~g~~~~~a~~~L~~LAe~lg~PV-~tt~~gkg~v~~~hpl~lg~------~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+|.++..+++.+++++|+|++|+|| +++.++|+.++++||+++|. ..++++++||+||.+|+++.++.+..|.
T Consensus 207 ~G~g~~~~~a~~~l~~lae~~~~Pv~~~~~~g~g~~~~~~p~~~G~~g~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~ 286 (528)
T 1q6z_A 207 LGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPG 286 (528)
T ss_dssp ECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECCSCHHHHHHHHTTCSEEEEESSCTTCCCSCCCS
T ss_pred ECCccchhhHHHHHHHHHHHHCCCEEEeccCccccCCCCCccccCcCCCCcHHHHHHHhcCCEEEEECCCCccccccCcC
Confidence 9998877777899999999999999 67778999999999999873 4567789999999999999998877776
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchhhh
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVILV 658 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 658 (1065)
..++++.++||||.|+.++++. .+++.+++|++.+|++|.+.++... .|.. ++++.....
T Consensus 287 ~~~~~~~~~i~id~d~~~~~~~-~~~~~i~~d~~~~l~~L~~~~~~~~---------~~~~-------~~~~~~~~~--- 346 (528)
T 1q6z_A 287 QYLKPGTRLISVTCDPLEAARA-PMGDAIVADIGAMASALANLVEESS---------RQLP-------TAAPEPAKV--- 346 (528)
T ss_dssp CSSCTTCEEEEEESCHHHHHHC-SSSEEEESCHHHHHHHHHHHSCCCC---------SCCC-------CCCCCCCCC---
T ss_pred CcCCCCCeEEEEeCCHHHhCCC-CCCeeEeCCHHHHHHHHHHHhhccc---------cchH-------HHHhhhhcc---
Confidence 5555678999999999999998 8999999999999999988775210 1110 011110000
Q ss_pred hhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCccc
Q psy14416 659 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 738 (1065)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~~~ 738 (1065)
. ....++ + +..+++ .|.+.+|++++++.|+|++..|.
T Consensus 347 ----------------~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~~d~g~~~~~~ 383 (528)
T 1q6z_A 347 ----------------D--------QDAGRL-----H---PETVFD-----------TLNDMAPENAIYLNESTSTTAQM 383 (528)
T ss_dssp ----------------C--------CCSSSB-----C---HHHHHH-----------HHHHHSCTTCEEEEECTTSHHHH
T ss_pred ----------------c--------ccCCCc-----C---HHHHHH-----------HHHhhCCCCeEEEECCcccHHHH
Confidence 0 012245 6 778888 99999999999999999877765
Q ss_pred ccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccccc
Q psy14416 739 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 818 (1065)
Q Consensus 739 ~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 818 (1065)
.+++.. . .+ +
T Consensus 384 ~~~~~~-----~------------------------------------------~~-------------~---------- 393 (528)
T 1q6z_A 384 WQRLNM-----R------------------------------------------NP-------------G---------- 393 (528)
T ss_dssp HHHCCC-----C------------------------------------------SS-------------S----------
T ss_pred HHhccc-----c------------------------------------------CC-------------C----------
Confidence 433221 0 00 0
Q ss_pred eeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEE
Q psy14416 819 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 898 (1065)
Q Consensus 819 ~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 898 (1065)
.++.|.| |+| |+++++++ |++++. |+++|+
T Consensus 394 ---------~~~~~~g--g~~----------------------------G~~l~~A~--G~a~a~--------~~~~vv- 423 (528)
T 1q6z_A 394 ---------SYYFCAA--GGL----------------------------GFALPAAI--GVQLAE--------PERQVI- 423 (528)
T ss_dssp ---------CEEECTT--CCT----------------------------TSHHHHHH--HHHHHC--------TTSCEE-
T ss_pred ---------cEECCCC--ccc----------------------------cchHHHHH--HHHHhC--------CCCcEE-
Confidence 0122233 555 78778777 888887 888899
Q ss_pred ccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchh
Q psy14416 899 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEA 978 (1065)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~ 978 (1065)
+++|||+| +|+.++++++ .++++|+++||+||+| |+.+...
T Consensus 424 --------------------------------~~~GDG~~-~~~~~~l~~a-----~~~~l~~~ivv~nN~~-~~~~~~~ 464 (528)
T 1q6z_A 424 --------------------------------AVIGDGSA-NYSISALWTA-----AQYNIPTIFVIMNNGT-YGALRWF 464 (528)
T ss_dssp --------------------------------EEEEHHHH-TTTGGGHHHH-----HHHTCCCEEEEEECSB-CHHHHHH
T ss_pred --------------------------------EEECCcHH-HhhHHHHHHH-----HHhCCCeEEEEEeCCc-chHhHHH
Confidence 99999999 9999999999 9999999999999987 3321111
Q ss_pred hHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 979 TYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
........ ..... .+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++.
T Consensus 465 --~~~~~~~~----~~~~~-~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~liev~~~~~~ 527 (528)
T 1q6z_A 465 --AGVLEAEN----VPGLD-VPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSA-KGPVLIEVSTVSPV 527 (528)
T ss_dssp --HHHHTCCS----CCSCB-CCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHHTC-SSCEEEEEEBCC--
T ss_pred --HHHhcCCC----cccCC-CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHC-CCcEEEEEEecCCC
Confidence 11110111 11122 267999999999999999999999999999999986 89999999998764
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-74 Score=698.77 Aligned_cols=528 Identities=20% Similarity=0.244 Sum_probs=417.1
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCc-hhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIP-VIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~-~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||++ +++|++++. . |++|.++||++|+|||+||||+||||+||+||+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL 88 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence 479999999999999999999999999 999999998 5 9999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCC-CCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGI-GGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~-ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
++||++|+.+++|||+|||++|.+++++ +++|++||.++|+++|||++++++++++++.+++|++.|.++|||||||+|
T Consensus 89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (573)
T 2iht_A 89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISL 168 (573)
T ss_dssp HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhccccc-cCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCC--CCCCHHHHHHHHHHHHhCC
Q psy14416 424 PANLLAQRINQS-ALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTL--PWPGIAELKQASRLILEAK 500 (1065)
Q Consensus 424 P~Dv~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~v~~~ae~L~~Ak 500 (1065)
|.|++..+.... ...+.+.. + ...+.. ..++.+.+++++++|+++|
T Consensus 169 P~dv~~~~~~~~~~~~~~~~~-----~--------------------------~~~~~~~~~~~~~~~v~~~~~~l~~a~ 217 (573)
T 2iht_A 169 PVDLLGSSEGIDTTVPNPPAN-----T--------------------------PAKPVGVVADGWQKAADQAAALLAEAK 217 (573)
T ss_dssp EHHHHTCCTTCC---CCCCCC-----C--------------------------CSSCBEEECTTHHHHHHHHHHHHHHCS
T ss_pred cchHhhhhhcccccCCccccc-----c--------------------------CCCCccccCCCCHHHHHHHHHHHHcCC
Confidence 999986651100 00000000 0 000000 1356788999999999999
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHH------------HHhhhcCCCEEEEeCCc
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAA------------RTHALQNADLVLLLGAR 568 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~------------~~~al~~aDlVI~iG~~ 568 (1065)
||+|++|.++..+++.+++++|+|++|+||++++++|+.+|++||+++|.. .++++++||+||.+|++
T Consensus 218 rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~ 297 (573)
T 2iht_A 218 HPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYD 297 (573)
T ss_dssp SEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCC
T ss_pred CeEEEECCCccccCHHHHHHHHHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCC
Confidence 999999998877777899999999999999999999999999999987632 34678899999999999
Q ss_pred -cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHh
Q psy14416 569 -LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 647 (1065)
Q Consensus 569 -~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~ 647 (1065)
+.++.+..|.. .++.++||||.|+..+++++..++.+++|+..+|++|.+.++.. .+..| +.+++.+++
T Consensus 298 ~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~-------~~~~w-~~~~~~~~~ 367 (573)
T 2iht_A 298 YAEDLRPSMWQK--GIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASF-------GAKQR-HDIEPLRAR 367 (573)
T ss_dssp GGGCCCHHHHCC--SSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTC-------CCCCC-CCCHHHHHH
T ss_pred ccccccccccCC--CCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcccc-------CchhH-HHHHHHHHH
Confidence 87766555531 14678999999999999999999999999999999998877521 01223 222222222
Q ss_pred hhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC----
Q psy14416 648 NRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV---- 723 (1065)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~---- 723 (1065)
......+. . ....++ + +..+++ .|.+.+|+
T Consensus 368 ~~~~~~~~-------------------~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~~~ 401 (573)
T 2iht_A 368 IAEFLADP-------------------E--------TYEDGM-----R---VHQVID-----------SMNTVMEEAAEP 401 (573)
T ss_dssp HHHHHTCC-------------------C--------CCSSSB-----C---HHHHHH-----------HHHHHHHHHSCT
T ss_pred hhhhhhcc-------------------c--------cCcCCc-----C---HHHHHH-----------HHHHhcccccCC
Confidence 11111011 0 112245 6 778888 99999998
Q ss_pred -cEEEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcc
Q psy14416 724 -ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 802 (1065)
Q Consensus 724 -d~ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1065)
+.+++.|+|.+..|..+++.. ..| +
T Consensus 402 ~~~iv~~d~G~~~~~~~~~~~~-----------------------------------------------~~~-------~ 427 (573)
T 2iht_A 402 GEGTIVSDIGFFRHYGVLFARA-----------------------------------------------DQP-------F 427 (573)
T ss_dssp TCCEEEECSSHHHHHHHHHCCC-----------------------------------------------CST-------T
T ss_pred CCcEEEEcCcHhHHHHHHhcCc-----------------------------------------------CCC-------C
Confidence 999999998766554432210 000 0
Q ss_pred cccCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhhe
Q psy14416 803 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 882 (1065)
Q Consensus 803 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 882 (1065)
.++ + +|-+|+| |+++++++ |++++
T Consensus 428 ~~~-------------------------~-~~g~g~m----------------------------G~~l~~Ai--Gaa~a 451 (573)
T 2iht_A 428 GFL-------------------------T-SAGCSSF----------------------------GYGIPAAI--GAQMA 451 (573)
T ss_dssp SEE-------------------------C-CSSSCCT----------------------------TCHHHHHH--HHHHH
T ss_pred eEE-------------------------c-CCCCccc----------------------------ccHHHHHH--HHHHh
Confidence 011 1 1123444 88888877 88888
Q ss_pred eccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEE
Q psy14416 883 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 962 (1065)
Q Consensus 883 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1065)
. |+++|+ +++|||+| +|+.++++++ .++++|++
T Consensus 452 ~--------~~~~vv---------------------------------~i~GDG~~-~~~~~~L~~a-----~~~~l~~~ 484 (573)
T 2iht_A 452 R--------PDQPTF---------------------------------LIAGDGGF-HSNSSDLETI-----ARLNLPIV 484 (573)
T ss_dssp S--------TTSCEE---------------------------------EEEEHHHH-HHTGGGHHHH-----HHHTCCCE
T ss_pred C--------CCCcEE---------------------------------EEEccHHH-HhHHHHHHHH-----HHhCCCeE
Confidence 7 888999 99999999 9999999999 99999999
Q ss_pred EEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEE
Q psy14416 963 LVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLIN 1042 (1065)
Q Consensus 963 ~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 1042 (1065)
+||+||+| |+.+... ........... ......+||.++|++||+++++|++.+||+++|+++++. ++|+|||
T Consensus 485 ivv~NN~~-~~~~~~~--~~~~~~~~~~~----~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~lie 556 (573)
T 2iht_A 485 TVVVNNDT-NGLIELY--QNIGHHRSHDP----AVKFGGVDFVALAEANGVDATRATNREELLAALRKGAEL-GRPFLIE 556 (573)
T ss_dssp EEEEECSB-CHHHHHH--HHHHHSSCCGG----GTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHTS-SSCEEEE
T ss_pred EEEEECCc-chhhHHH--HHHhcCCCcCc----cccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhC-CCCEEEE
Confidence 99999987 2322111 11111111110 011234899999999999999999999999999999976 8999999
Q ss_pred EEeCC
Q psy14416 1043 ILINP 1047 (1065)
Q Consensus 1043 ~~~~~ 1047 (1065)
|.+++
T Consensus 557 v~~~~ 561 (573)
T 2iht_A 557 VPVNY 561 (573)
T ss_dssp EEBCC
T ss_pred EECCC
Confidence 99998
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-72 Score=685.12 Aligned_cols=528 Identities=16% Similarity=0.231 Sum_probs=426.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC--CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~--~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+||||+||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 46899999999999999999999999999999999764 7999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++++++++++.+++|++.|.+++|||||| |
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-i 161 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-V 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHhCCCcE
Q psy14416 424 PANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLILEAKAPL 503 (1065)
Q Consensus 424 P~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L~~AkrPv 503 (1065)
|.|++..+++........... + ...+ . .++.+.+++++++|+++|||+
T Consensus 162 P~dv~~~~~~~~~~~~~~~~~------------------------~------~~~~-~-~~~~~~i~~~~~~l~~a~rpv 209 (590)
T 1v5e_A 162 PGDFAKVEIDNDQWYSSANSL------------------------R------KYAP-I-APAAQDIDAAVELLNNSKRPV 209 (590)
T ss_dssp ETTGGGCEEEGGGCCCCGGGC------------------------C------CCCC-C-CCCHHHHHHHHHHHHHCSSEE
T ss_pred ccchhhcccCccccccccccc------------------------c------cCCC-C-CCCHHHHHHHHHHHHhCCCeE
Confidence 999987655321100000000 0 0011 1 456788999999999999999
Q ss_pred EEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCEEEEeCCccccccccC
Q psy14416 504 VIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADLVLLLGARLNWILHFG 576 (1065)
Q Consensus 504 IlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDlVI~iG~~~~~~~~~g 576 (1065)
|++|.++ . ++.+++++|+|++++||++++++||.++++||+++|. ..++++++||+||.+|++++++...+
T Consensus 210 il~G~g~-~-~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~ 287 (590)
T 1v5e_A 210 IYAGIGT-M-GHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEG 287 (590)
T ss_dssp EEECGGG-T-TCHHHHHHHHHHHTCCEEECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTT
T ss_pred EEEcCch-h-HHHHHHHHHHHHHCCCEEEccccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhccc
Confidence 9999999 6 7789999999999999999999999999999999873 45678899999999999998765211
Q ss_pred CCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccchh
Q psy14416 577 RAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLPVI 656 (1065)
Q Consensus 577 ~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 656 (1065)
. .| ++.++||||.|+..+++++..++.+++|++.+|++|.+.+.. .....|.+++++..++... ..+..
T Consensus 288 ~--~~-~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~~-------~~~~~w~~~~~~~~~~~~~-~~~~~ 356 (590)
T 1v5e_A 288 T--FR-NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDA-------VEESAWWTANLKNIANWRE-YINML 356 (590)
T ss_dssp T--TT-TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred c--CC-CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhcc-------CCcHHHHHHHHHHHHHhHh-hhhhc
Confidence 1 13 467899999999999999999999999999999999987752 1235687776655443321 11000
Q ss_pred hhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCcCc
Q psy14416 657 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~~~ 736 (1065)
.. ....++ + +..+++ .|.+.+|++++++.|+|.+..
T Consensus 357 ------------------~~-------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~ivv~d~G~~~~ 392 (590)
T 1v5e_A 357 ------------------ET-------KEEGDL-----Q---FYQVYN-----------AINNHADEDAIYSIDVGNSTQ 392 (590)
T ss_dssp ------------------HT-------CCSSBC-----C---HHHHHH-----------HHHHHSCTTCEEEECSSHHHH
T ss_pred ------------------cc-------CCCCCc-----C---HHHHHH-----------HHHhhCCCCCEEEECCchHHH
Confidence 00 012235 6 778888 999999999999999998777
Q ss_pred ccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccccc
Q psy14416 737 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 816 (1065)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 816 (1065)
|..+++.. . -|.+ ++.
T Consensus 393 ~~~~~~~~-----~----~~~~---------------------------------------------~~~---------- 408 (590)
T 1v5e_A 393 TSIRHLHM-----T----PKNM---------------------------------------------WRT---------- 408 (590)
T ss_dssp GGGGTCCC-----C----TTSE---------------------------------------------EEC----------
T ss_pred HHHHhccc-----C----CCCe---------------------------------------------EEc----------
Confidence 75543321 0 0000 000
Q ss_pred cceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccEEE
Q psy14416 817 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 896 (1065)
Q Consensus 817 ~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 896 (1065)
|+-.|+| |+++++++ |++++. |+++|
T Consensus 409 ----------------~~~~g~m----------------------------G~~l~~Ai--Gaala~--------~~~~v 434 (590)
T 1v5e_A 409 ----------------SPLFATM----------------------------GIAIPGGL--GAKNTY--------PDRQV 434 (590)
T ss_dssp ----------------CCSSCCT----------------------------TCHHHHHH--HHHHHC--------TTSCE
T ss_pred ----------------CCCCCcc----------------------------cChHHHHH--HHHHhC--------CCCeE
Confidence 1223444 88888877 888887 88899
Q ss_pred EEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCc
Q psy14416 897 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 976 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~ 976 (1065)
+ +++|||+| +|+.++++++ +++++|+++||+||+| |+...
T Consensus 435 v---------------------------------~i~GDG~~-~~~~~~L~ta-----~~~~l~~~ivv~NN~~-~~~~~ 474 (590)
T 1v5e_A 435 W---------------------------------NIIGDGAF-SMTYPDVVTN-----VRYNMPVINVVFSNTE-YAFIK 474 (590)
T ss_dssp E---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEECSS-CTTGG
T ss_pred E---------------------------------EEEechHH-hchHHHHHHH-----HHhCCCCEEEEEECCc-hHHHH
Confidence 9 99999999 9999999999 9999999999999987 33222
Q ss_pred hhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcC--CCCEEEEEEeCCCC
Q psy14416 977 EATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTT--TRPSLINILINPSA 1049 (1065)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~--~~~~li~~~~~~~~ 1049 (1065)
... .. .+ .. ......+++||.++|++||+++++|++.+||+++|+++++.. ++|+||||.+++++
T Consensus 475 ~~q-~~---~~-~~---~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 475 NKY-ED---TN-KN---LFGVDFTDVDYAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp GTT-SS---SC-CS---CCCCCCCCCCHHHHHHHTTSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHH-HH---hc-CC---CccccCCCCCHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEEecccc
Confidence 110 00 00 11 111113579999999999999999999999999999998642 78999999999887
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-74 Score=698.17 Aligned_cols=528 Identities=15% Similarity=0.132 Sum_probs=395.6
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||||+||+||||||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 5789999999999999999999999999999999965 579999999999999999999999999999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhh------HHHHHHHHHHHhhcCCCCE
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVRLSTFGKPGV 418 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~------i~~~i~~A~~~A~~~~~GP 418 (1065)
++||++|+.+++|||+|||++|.++++++++|++||.++|+++|||++++.++++ +++.+++|+ .++||||
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~---~~~r~GP 163 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHAL---GTLHAGG 163 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHH---HSCCSSC
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHH---hcCCCCC
Confidence 9999999999999999999999999999999999999999999999999998864 788888887 3588999
Q ss_pred EEEecChhhhhh-ccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHH-HHHHHHH
Q psy14416 419 SYLDFPANLLAQ-RINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAEL-KQASRLI 496 (1065)
Q Consensus 419 V~L~iP~Dv~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v-~~~ae~L 496 (1065)
|||+||.|++.. +.+..... .+... ..+.+ ...+....++.+.+ ++++++|
T Consensus 164 V~i~iP~d~~~~~~~~~~~~~-~~~~~--------------------~~~~~------~~~~~~~~~~~~~~~~~~~~~l 216 (556)
T 3hww_A 164 VHINCPFAEPLYGEMDDTGLS-WQQRL--------------------GDWWQ------DDKPWLREAPRLESEKQRDWFF 216 (556)
T ss_dssp EEEEEECCSCCSCCCSSTTHH-HHHTT--------------------GGGGG------CCSCSSCCCCCCCCCCCTTHHH
T ss_pred EEEeCCcCCCCCCCccccccc-ccccc--------------------ccccc------cccccccccccccchhhhhhhh
Confidence 999999986433 11110000 00000 00000 00000000111111 2345567
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC-CCCCCCCCCccccc-HHHHhhhcCCCEEEEeCCccccccc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM-GKGVVPDAHPNCVS-AARTHALQNADLVLLLGARLNWILH 574 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~-gkg~v~~~hpl~lg-~~~~~al~~aDlVI~iG~~~~~~~~ 574 (1065)
.+||||+|++|.+ .+++.++|++|+|++|+||++|++ +|+.++++||+++| ...++++++||+||.+|++++++.+
T Consensus 217 ~~A~rPvIl~G~~--~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~ 294 (556)
T 3hww_A 217 WRQKRGVVVAGRM--SAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRL 294 (556)
T ss_dssp HTTSCEEEEECBC--CHHHHHHHHHHHHHHTCCEEECTTTCSCCSSCCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHH
T ss_pred ccCCCeEEEECCC--ChHHHHHHHHHHHhcCCEEEEccCCCCCCCcCcHHHHhcCchhhhcccCCCEEEEcCCCcccHHH
Confidence 8999999999974 467889999999999999999986 78999999999998 4567788999999999999988776
Q ss_pred cCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhhhhcccc
Q psy14416 575 FGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 575 ~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 654 (1065)
.+|...+.+ .++||||.|+.++++++.+++.+++|++.+|++|.+.. ...|.+++++.+++......+
T Consensus 295 ~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~-----------~~~w~~~~~~~~~~~~~~~~~ 362 (556)
T 3hww_A 295 LQWQASCEP-EEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEK-----------RQPWCVEIPRLAEQAMQAVIA 362 (556)
T ss_dssp HHHHHHCCC-SEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHSCCCC-----------CCCCCSSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CeEEEECCCCccCCCCCCceEEEEcCHHHHHHhccccc-----------chHHHHHHHHHHHHHHHHHhh
Confidence 666555544 48999999999999999999999999999999863321 123433333332222221110
Q ss_pred hhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEEECCCCc
Q psy14416 655 VILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIY 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv~d~G~~ 734 (1065)
...++ + +..+++ .|.+.+|++++|+.++|.+
T Consensus 363 ------------------------------~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~~g~~~~ 393 (556)
T 3hww_A 363 ------------------------------RRDAF-----G---EAQLAH-----------RICDYLPEQGQLFVGNSLV 393 (556)
T ss_dssp ------------------------------TCCSS-----S---HHHHHH-----------TGGGTCCTTCEEEECSSHH
T ss_pred ------------------------------cccCc-----C---HHHHHH-----------HHHHhCCCCCeEEEeCCcH
Confidence 12245 6 778889 9999999999999887543
Q ss_pred CcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcccccccc
Q psy14416 735 GGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIV 814 (1065)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 814 (1065)
.++..++ .. . + .+.
T Consensus 394 ~~~~~~~--------~~----------------------------~-------------~----~~~------------- 407 (556)
T 3hww_A 394 VRLIDAL--------SQ----------------------------L-------------P----AGY------------- 407 (556)
T ss_dssp HHHHHHH--------CC----------------------------C-------------C----TTC-------------
T ss_pred HHHHHHh--------cc----------------------------C-------------C----CCc-------------
Confidence 2221100 00 0 0 000
Q ss_pred cccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccccccccE
Q psy14416 815 ESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVI 894 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 894 (1065)
.++.|+|-.|++ |. +++++ |++++ |++
T Consensus 408 -------------~~~~~~g~~g~~----------------------------G~-l~~A~--Gaa~a---------~~~ 434 (556)
T 3hww_A 408 -------------PVYSNRGASGID----------------------------GL-LSTAA--GVQRA---------SGK 434 (556)
T ss_dssp -------------CEEECCSSCCSS----------------------------SH-HHHHH--HHHHH---------HCC
T ss_pred -------------eEEecCcccccc----------------------------cH-HHHHH--HHHhc---------CCC
Confidence 112233334444 44 45555 66665 467
Q ss_pred EEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCc--cc
Q psy14416 895 LVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNG--IY 972 (1065)
Q Consensus 895 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g--~~ 972 (1065)
+|+ +++|||+| +|+.++|+++ +++++|+++||+||+| ++
T Consensus 435 ~vv---------------------------------~i~GDGsf-~~~~~eL~ta-----~~~~lpv~ivv~NN~~~~~~ 475 (556)
T 3hww_A 435 PTL---------------------------------AIVGDLSA-LYDLNALALL-----RQVSAPLVLIVVNNNGGQIF 475 (556)
T ss_dssp CEE---------------------------------EEEEHHHH-HHTGGGHHHH-----TTCSSCEEEEEEESCC----
T ss_pred cEE---------------------------------EEEccHHh-hhcchhhHhh-----cccCCCcEEEEEECCCCCcc
Confidence 899 99999999 9999999999 9999999999999987 44
Q ss_pred CCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 973 GGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.++... . .....+...+++||.++|++||++|++|++.+||+++|+++++. ++|+||||.++++++.+
T Consensus 476 ~~~~~~~--~--------~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~-~gp~liev~~~~~~~~~ 544 (556)
T 3hww_A 476 SLLPTPQ--S--------ERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRT-PTTTVIEMVVNDTDGAQ 544 (556)
T ss_dssp -----------------------CCCCCCCCSHHHHHHTTCEEECCSSHHHHHHHHHHHTTS-SSEEEEEEECCSSHHHH
T ss_pred cCCCCcc--h--------hHHHhccCCCCCCHHHHHHHcCCcEEecCCHHHHHHHHHHHHhC-CCCEEEEEECCccccHH
Confidence 4333210 0 01122345678999999999999999999999999999999986 89999999999988765
Q ss_pred cch
Q psy14416 1053 PQN 1055 (1065)
Q Consensus 1053 ~~~ 1055 (1065)
..+
T Consensus 545 ~l~ 547 (556)
T 3hww_A 545 TLQ 547 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 533
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-70 Score=666.61 Aligned_cols=525 Identities=16% Similarity=0.170 Sum_probs=412.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+|| |+||++|||||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 46899999999999999999999999999999999764 7999999999999999999999999 999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCC--------CCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--------FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga--------~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||++|+.+++|||+|||++|.++++++. .|..||.++|+++|||++++++++++++.+++|++.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999998876653 24458999999999999999999999999999999999876
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
|||||+||.|++..+.+..... +.. .......+.++.+.+++++++|
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~--~~~-------------------------------~~~~~~~~~~~~~~i~~~~~~l 206 (568)
T 2wvg_A 160 KPVYLEIACNIASMPCAAPGPA--SAL-------------------------------FNDEASDEASLNAAVEETLKFI 206 (568)
T ss_dssp CCEEEEEEGGGTTSEECEECCT--HHH-------------------------------HCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEechhHhcCcccCCCcc--ccc-------------------------------ccCCCCCccccHHHHHHHHHHH
Confidence 9999999999987654321100 000 0000111123457799999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
+++|||+|++|.++.++++.+++++|+|++|+||++++++||.++++||+++|. ..++++++||+||.+|++
T Consensus 207 ~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~ 286 (568)
T 2wvg_A 207 ANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPV 286 (568)
T ss_dssp TTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCC
T ss_pred HhCCCCEEEECccccccchHHHHHHHHHHhCCCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCC
Confidence 999999999999998888889999999999999999999999999999998773 245678899999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
++++.+.+|.. +.++.++||||.|+..+++.+..+ .+++.+|++|.+.++. ....|. .|.+..+
T Consensus 287 ~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~----~~~~~~l~~L~~~l~~--------~~~~~~-~~~~~~~-- 350 (568)
T 2wvg_A 287 FNDYSTTGWTD-IPDPKKLVLAEPRSVVVNGIRFPS----VHLKDYLTRLAQKVSK--------KTGALD-FFKSLNA-- 350 (568)
T ss_dssp CBTTTTTTTTC-CCCTTTEEEECSSEEEETTEEEES----CCHHHHHHHHHHHCCC--------CCHHHH-HHHHTTC--
T ss_pred ccccccccccc-CCCCCcEEEEeCChhhcCCeecCC----CCHHHHHHHHHHhccc--------cccchh-hhhhhhh--
Confidence 99887766654 335678999999999888654433 4579999999887751 124563 2332110
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
....... . .....++ + +..+++ .|.+.+|++++++
T Consensus 351 ~~~~~~~-------------------~-------~~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~ 385 (568)
T 2wvg_A 351 GELKKAA-------------------P-------ADPSAPL-----V---NAEIAR-----------QVEALLTPNTTVI 385 (568)
T ss_dssp CSCCCCC-------------------C-------CCTTSBC-----C---HHHHHH-----------HHHTTCCTTEEEE
T ss_pred hcccccc-------------------c-------CCCCCcc-----C---HHHHHH-----------HHHHhCCCCCEEE
Confidence 0110000 0 0112345 6 778888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|.|.+. |..+++.. + .+ ..++
T Consensus 386 ~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~~~--- 407 (568)
T 2wvg_A 386 AETGDSW-FNAQRMKL-----------P------------------------------------NG-------ARVE--- 407 (568)
T ss_dssp ECSSHHH-HHHHTCCC-----------C------------------------------------TT-------CEEE---
T ss_pred EcCcHHH-HHHhhccc-----------C------------------------------------CC-------CeEE---
Confidence 9998643 32211110 0 00 0000
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
.+|.+|+| |+++++++ |++++.
T Consensus 408 -----------------------~~~~~g~~----------------------------G~~l~~A~--G~ala~----- 429 (568)
T 2wvg_A 408 -----------------------YEMQWGHI----------------------------GWSVPAAF--GYAVGA----- 429 (568)
T ss_dssp -----------------------CCTTTCCT----------------------------TTHHHHHH--HHHHHC-----
T ss_pred -----------------------eCCCcchh----------------------------hhHHHHHH--HHHHhC-----
Confidence 02224444 88888887 889988
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|+ +++|||+| +|+.++++++ +++++|+++||+||
T Consensus 430 ---~~~~vv---------------------------------~i~GDGs~-~~~~~el~ta-----~~~~l~~~ivv~NN 467 (568)
T 2wvg_A 430 ---PERRNI---------------------------------LMVGDGSF-QLTAQEVAQM-----VRLKLPVIIFLINN 467 (568)
T ss_dssp ---TTSEEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEEC
T ss_pred ---CCCcEE---------------------------------EEEcChhH-hccHHHHHHH-----HHcCCCcEEEEEEC
Confidence 889999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCC---------CeEeeCCHHHHHHHHHHHHhcCCCCE
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGH---------DGYLCTTVPQIKQAMKKCLQTTTRPS 1039 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~l~~~~~~~~~~~~~~~ 1039 (1065)
+| |+.+.. ... ..+...+++||.++|++||+ ++++|++.+||+++++++++..++|+
T Consensus 468 ~~-~~~~~~------~~~-------~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~ 533 (568)
T 2wvg_A 468 YG-YTIEVM------IHD-------GPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPT 533 (568)
T ss_dssp SS-CHHHHT------TSC-------CGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCE
T ss_pred Cc-ceEeee------ecc-------CCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHhcCCCcE
Confidence 98 221110 000 11233467999999999999 89999999999999999987437999
Q ss_pred EEEEEeCCCCCCCcchhhh
Q psy14416 1040 LINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1040 li~~~~~~~~~~~~~~~~~ 1058 (1065)
||||.+++++..++....|
T Consensus 534 liev~~~~~~~~~~~~~~~ 552 (568)
T 2wvg_A 534 LIECFIGREDCTEELVKWG 552 (568)
T ss_dssp EEEEECCTTCCCHHHHHHH
T ss_pred EEEEEcCccccCHHHHHHH
Confidence 9999999998876644444
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-70 Score=662.50 Aligned_cols=521 Identities=15% Similarity=0.172 Sum_probs=410.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
+++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||+|+|| |+||++|||||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 46899999999999999999999999999999999764 7999999999999999999999999 999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCC--------CCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--------FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga--------~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||++|+.+++|||+|||++|.+.++++. .|..||.++|+++|||++++++++++++.+++|++.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999998887654 24458999999999999999999999999999999999876
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
|||||+||.|++..+.+..... +... ......+.++.+.+++++++|
T Consensus 160 GPV~l~iP~d~~~~~~~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~l 206 (566)
T 2vbi_A 160 KPAYLDIACNIASEPCVRPGPV--SSLL-------------------------------SEPEIDHTSLKAAVDATVALL 206 (566)
T ss_dssp CCEEEEEETTTTTSBCCEECCC--SCSC-------------------------------CCBCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEechhhcCCeecCCCCC--cccC-------------------------------CCCCCCcchHHHHHHHHHHHH
Confidence 9999999999987665321100 0000 000011123457799999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
+++|||+|++|.++.++++.+++++|+|++|+||++++++|+.++++||+++|. ..++++++||+||.+|++
T Consensus 207 ~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~ 286 (566)
T 2vbi_A 207 EKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPV 286 (566)
T ss_dssp HTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCC
T ss_pred HhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCC
Confidence 999999999999998888899999999999999999999999999999998773 345678899999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+.++.+.+|.. +.++.++||||.|+..+++.+..++ +++++|++|.+.++. ....|. .|
T Consensus 287 ~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~--------~~~~~~-~~------- 345 (566)
T 2vbi_A 287 FNDYSTVGWSA-WPKGPNVILAEPDRVTVDGRAYDGF----TLRAFLQALAEKAPA--------RPASAQ-KS------- 345 (566)
T ss_dssp CBTTTTTTTTS-CCCSTTEEEECSSEEEETTEEEESS----CHHHHHHHHHHHCCC--------CCHHHH-TS-------
T ss_pred ccccccccccc-cCCCCcEEEEeCChheeCCcccCCc----cHHHHHHHHHHhccc--------cccchh-hh-------
Confidence 99988777754 3356789999999998887554443 578999999887651 123341 11
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
.+..+.. .+ . ....++ + +..+++ .|.+.+|++.+++
T Consensus 346 ~~~~~~~----------~~--------------~-~~~~~l-----~---~~~~~~-----------~l~~~l~~~~iv~ 381 (566)
T 2vbi_A 346 SVPTCSL----------TA--------------T-SDEAGL-----T---NDEIVR-----------HINALLTSNTTLV 381 (566)
T ss_dssp CCCCCCC----------CC--------------C-CTTSCC-----C---HHHHHH-----------HHHHHCCTTEEEE
T ss_pred hhhhhcc----------CC--------------C-CCCCcc-----C---HHHHHH-----------HHHHhcCCCCEEE
Confidence 1111100 00 0 012245 6 778888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|.|.+. |..+++.. + .+ +.+
T Consensus 382 ~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~~---- 402 (566)
T 2vbi_A 382 AETGDSW-FNAMRMTL-----------P------------------------------------RG-------ARV---- 402 (566)
T ss_dssp ECSSHHH-HHHHTCCC-----------C------------------------------------TT-------CEE----
T ss_pred ECCchHH-HhhhheEC-----------C------------------------------------CC-------CEE----
Confidence 9998642 32211110 0 00 000
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
+ .+|.+|+| |+++++++ |++++.
T Consensus 403 ---------------------~-~~~~~g~m----------------------------G~~l~~A~--G~ala~----- 425 (566)
T 2vbi_A 403 ---------------------E-LEMQWGHI----------------------------GWSVPSAF--GNAMGS----- 425 (566)
T ss_dssp ---------------------E-CCTTTCCT----------------------------TTHHHHHH--HHHHTC-----
T ss_pred ---------------------E-ecCcccch----------------------------hhHHHHHH--HHHHhC-----
Confidence 0 02224444 88888887 888887
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|+ +++|||+| +|+.++++++ .++++|+++||+||
T Consensus 426 ---~~~~vv---------------------------------~~~GDG~~-~~~~~eL~ta-----~~~~l~~~ivv~nN 463 (566)
T 2vbi_A 426 ---QDRQHV---------------------------------VMVGDGSF-QLTAQEVAQM-----VRYELPVIIFLINN 463 (566)
T ss_dssp ---TTSEEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEEC
T ss_pred ---CCCcEE---------------------------------EEEcchHH-HhhHHHHHHH-----HHhCCCcEEEEEEC
Confidence 889999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCC-----CeEeeCCHHHHHHHHHHHHhcCCCCEEEEE
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGH-----DGYLCTTVPQIKQAMKKCLQTTTRPSLINI 1043 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~l~~~~~~~~~~~~~~~li~~ 1043 (1065)
+| |+.... ... ..+...+.+||.++|++||+ ++++|++.+||+++|+++++..++|+||||
T Consensus 464 ~~-~~~~~~------~~~-------~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~liev 529 (566)
T 2vbi_A 464 RG-YVIEIA------IHD-------GPYNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIEC 529 (566)
T ss_dssp SS-CHHHHT------TSC-------CGGGCCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred Cc-ceEEEe------ecc-------CCccCCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 88 221110 000 11233467999999999999 999999999999999999874379999999
Q ss_pred EeCCCCCCCcchhhh
Q psy14416 1044 LINPSADRKPQNFSW 1058 (1065)
Q Consensus 1044 ~~~~~~~~~~~~~~~ 1058 (1065)
.+++++..++....|
T Consensus 530 ~~~~~~~~~~~~~~~ 544 (566)
T 2vbi_A 530 QIDRTDCTDMLVQWG 544 (566)
T ss_dssp ECCTTCCCHHHHHHH
T ss_pred EeCcccCcHHHHHHH
Confidence 999998876644433
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-71 Score=669.71 Aligned_cols=525 Identities=18% Similarity=0.225 Sum_probs=406.8
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+.++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+|| |+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N 80 (563)
T 2vk8_A 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELS 80 (563)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred CccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHH
Confidence 357899999999999999999999999999999999765 7999999999999999999999999 99999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCC----------CCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhc
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHE----------GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTF 413 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~----------g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~ 413 (1065)
+++||++|+.+++|||+|||++|.+++ +.+++| ||.++|+++|||+.++++++++++.+++|++.|.+
T Consensus 81 ~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~ 158 (563)
T 2vk8_A 81 ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYV 158 (563)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998653 567888 58999999999999999999999999999999997
Q ss_pred CCCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHH
Q psy14416 414 GKPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQAS 493 (1065)
Q Consensus 414 ~~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~a 493 (1065)
.+ |||||+||.|++..+.+..... .+... ......+.++.+.+++++
T Consensus 159 ~~-GPV~l~iP~d~~~~~~~~~~~~-~~~~~-------------------------------~~~~~~~~~~~~~i~~~~ 205 (563)
T 2vk8_A 159 TQ-RPVYLGLPANLVDLNVPAKLLQ-TPIDM-------------------------------SLKPNDAESEKEVIDTIL 205 (563)
T ss_dssp HT-SCEEEEEETTGGGSEEEGGGGG-SCCCC-------------------------------SCCCCCHHHHHHHHHHHH
T ss_pred CC-CCEEEEechhhhcCccCCccCc-Ccccc-------------------------------cCCCCCchhhHHHHHHHH
Confidence 75 9999999999987655422100 00000 000011122356789999
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEe
Q psy14416 494 RLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLL 565 (1065)
Q Consensus 494 e~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~i 565 (1065)
++|++||||+|++|.++.++++.+++++|+|++|+||++++++||.+|++||+++|. ..++++++||+||.+
T Consensus 206 ~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~i 285 (563)
T 2vk8_A 206 VLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSV 285 (563)
T ss_dssp HHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEE
T ss_pred HHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEE
Confidence 999999999999999987778889999999999999999999999999999998763 346778999999999
Q ss_pred CCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHH
Q psy14416 566 GARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKC 645 (1065)
Q Consensus 566 G~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~ 645 (1065)
|++++++.+.+|.. +.++.++||||.|+..+++.+..++ +++.+|++|.+.+... .| .|.+ +
T Consensus 286 G~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~~--~~------~~~~-~---- 347 (563)
T 2vk8_A 286 GALLSDFNTGSFSY-SYKTKNIVEFHSDHMKIRNATFPGV----QMKFVLQKLLTTIADA--AK------GYKP-V---- 347 (563)
T ss_dssp SCCCCTTTTTTTCC-CCCCSCEEEECSSEEEETTEEEETC----CHHHHHHHHHHHHHHH--TT------TCCC-C----
T ss_pred CCCCcccccccccc-CCCCCeEEEEeCCceEECCcccCCc----CHHHHHHHHHHhhccc--cc------hhhh-h----
Confidence 99999887766643 3346789999999999888765544 5689999998776521 00 0110 0
Q ss_pred HhhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcE
Q psy14416 646 QTNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVIL 725 (1065)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ 725 (1065)
+.+++..... +. ....++ + +..+++ .|.+.+|+++
T Consensus 348 ~~~~~~~~~~------------------~~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~ 382 (563)
T 2vk8_A 348 AVPARTPANA------------------AV--------PASTPL-----K---QEWMWN-----------QLGNFLQEGD 382 (563)
T ss_dssp CCCCCCCCCC------------------CC--------CTTCBC-----C---HHHHHH-----------HHTTTCCTTC
T ss_pred hhhhhccccc------------------CC--------CCCCCc-----C---HHHHHH-----------HHHHhCCCCC
Confidence 0000000000 00 112345 6 778888 9999999999
Q ss_pred EEEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCccccc
Q psy14416 726 VIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGF 805 (1065)
Q Consensus 726 ilv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1065)
+++.|.|++. |..+++.. + .+ +.
T Consensus 383 iv~~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~-- 405 (563)
T 2vk8_A 383 VVIAETGTSA-FGINQTTF-----------P------------------------------------NN-------TY-- 405 (563)
T ss_dssp EEEECTTHHH-HHGGGSCC-----------C------------------------------------SS-------CE--
T ss_pred EEEECCchHH-HHHhhcCc-----------C------------------------------------CC-------Ce--
Confidence 9999998653 21111100 0 00 00
Q ss_pred CcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheecc
Q psy14416 806 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESG 885 (1065)
Q Consensus 806 ~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 885 (1065)
++. ||-+|+| |+++++++ |++++.
T Consensus 406 -----------------------~~~-~~~~g~m----------------------------G~~l~~A~--Gaala~-- 429 (563)
T 2vk8_A 406 -----------------------GIS-QVLWGSI----------------------------GFTTGATL--GAAFAA-- 429 (563)
T ss_dssp -----------------------EEC-CTTTCCT----------------------------THHHHHHH--HHHHHH--
T ss_pred -----------------------EEc-ccchhhh----------------------------hhHHHHHH--HHHHhC--
Confidence 000 2224555 88888887 888887
Q ss_pred cccccccc----EEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCE
Q psy14416 886 EVTTVLPV----ILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV 961 (1065)
Q Consensus 886 ~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1065)
|+ ++|+ +++|||+| +|+.++++++ +++++|+
T Consensus 430 ------~~~~~~~~vv---------------------------------~~~GDG~~-~~~~~el~ta-----~~~~l~~ 464 (563)
T 2vk8_A 430 ------EEIDPKKRVI---------------------------------LFIGDGSL-QLTVQEISTM-----IRWGLKP 464 (563)
T ss_dssp ------HHHCTTCCEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCC
T ss_pred ------cccCCCCCEE---------------------------------EEEcchHh-hccHHHHHHH-----HHcCCCc
Confidence 55 8899 99999999 9999999999 9999999
Q ss_pred EEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC---eEeeCCHHHHHHHHH-HHHhcCCC
Q psy14416 962 ILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD---GYLCTTVPQIKQAMK-KCLQTTTR 1037 (1065)
Q Consensus 962 ~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~l~~~~~-~~~~~~~~ 1037 (1065)
++||+||+|+ +... .. .+. . ..+...+.+||.++|++||++ +++|++.+||+++++ ++++..++
T Consensus 465 ~ivv~nN~~~-~~~~-----~~--~~~-~---~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~~~el~~al~~~a~~~~~~ 532 (563)
T 2vk8_A 465 YLFVLNNDGY-TIQK-----LI--HGP-K---AQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSK 532 (563)
T ss_dssp EEEEEESSSC-HHHH-----HH--SCT-T---CGGGCCCCCCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTTTTSCSS
T ss_pred EEEEEECCcc-hhhh-----hh--hCC-C---CCcccCCCCCHHHHHHHhCCCCCcEEEecCHHHHHHHHHHHHHhCCCC
Confidence 9999999882 2111 00 011 0 011223679999999999999 999999999999999 88875347
Q ss_pred CEEEEEEeCCCCCCCcchhhh
Q psy14416 1038 PSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1038 ~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
|+||||.+++++..+..+..|
T Consensus 533 p~liev~~~~~~~~~~~~~~~ 553 (563)
T 2vk8_A 533 IRMIEVMLPVFDAPQNLVEQA 553 (563)
T ss_dssp EEEEEEECCTTCCCHHHHHHH
T ss_pred cEEEEEEeCccccCHHHHHHH
Confidence 999999999998876654444
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-70 Score=666.46 Aligned_cols=516 Identities=17% Similarity=0.179 Sum_probs=402.6
Q ss_pred cccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCC-ceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccc
Q psy14416 263 YDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 341 (1065)
Q Consensus 263 ~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~-i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~ 341 (1065)
.+..++++++|++.|+++||+++||+||+++++|++++.+++ +++|.++||++|+|||+||||+||||+||+||+|||+
T Consensus 17 ~~~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~ 96 (565)
T 2nxw_A 17 RGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGA 96 (565)
T ss_dssp CSCCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHH
T ss_pred CCCCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCH
Confidence 445689999999999999999999999999999999997654 7899999999999999999999999999999999999
Q ss_pred cccccccccccccCcceEeecCCCccCCCCCCCC-----CccC-hhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCC
Q psy14416 342 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-----QECP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGK 415 (1065)
Q Consensus 342 ~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~-----Q~id-Q~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~ 415 (1065)
+|+++||++|+.+++|||+|||+++....+.+++ |++| |.++|+++|||++++++++++++.+++|++.|.+.
T Consensus 97 ~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~- 175 (565)
T 2nxw_A 97 FNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ- 175 (565)
T ss_dssp HTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999999999888774 7898 99999999999999999999999999999999875
Q ss_pred CCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHH
Q psy14416 416 PGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRL 495 (1065)
Q Consensus 416 ~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~ 495 (1065)
+|||||+||.|++.++++... . . ......+.+.++.+++++++
T Consensus 176 ~GPV~l~iP~Dv~~~~~~~~~-~---~---------------------------------~~~~~~~~~~~~~i~~~~~~ 218 (565)
T 2nxw_A 176 SRPVYLEIPRNMVNAEVEPVG-D---D---------------------------------PAWPVDRDALAACADEVLAA 218 (565)
T ss_dssp TCCEEEEEEGGGTTCBCCCCC-C---C---------------------------------CCCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECChhhhcCcCCCcc-c---c---------------------------------CCCCCCchhhHHHHHHHHHH
Confidence 699999999999877654211 0 0 00001111234678999999
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCC
Q psy14416 496 ILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGA 567 (1065)
Q Consensus 496 L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~ 567 (1065)
|+++|||+|++|.++.++++.+++++|+|++|+||++++++|+.++++||+++|. ..++++++||+||.+|+
T Consensus 219 l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~ 298 (565)
T 2nxw_A 219 MRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGA 298 (565)
T ss_dssp HHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESC
T ss_pred HHcCCCCEEEECCCcchhchHHHHHHHHHHhCCCEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECC
Confidence 9999999999999887777789999999999999999999999999999998873 34567889999999999
Q ss_pred ccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHh
Q psy14416 568 RLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQT 647 (1065)
Q Consensus 568 ~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~ 647 (1065)
++.++.+..|...+. ..++|++|.|+..+++.+..++ .+..++++|.+.++.. ...|...
T Consensus 299 ~~~~~~~~~~~~~~~-~~~~i~i~~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~~--------~~~w~~~------- 358 (565)
T 2nxw_A 299 ILSDTNFAVSQRKID-LRKTIHAFDRAVTLGYHTYADI----PLAGLVDALLERLPPS--------DRTTRGK------- 358 (565)
T ss_dssp CBCSSTTSBCTTTSC-GGGEEEEETTEEEETTEEEESC----CHHHHHHHHHHTSCCC--------CCCCCCS-------
T ss_pred CccccccccccccCC-CCcEEEEeCCceeeCCcccCCc----cHHHHHHHHHHhcccc--------chhhhhh-------
Confidence 998877665654333 4589999999988876544333 4578999988776521 1223210
Q ss_pred hhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCC--cE
Q psy14416 648 NRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPV--IL 725 (1065)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~--d~ 725 (1065)
........+ . ....++ + +..++. .|.+.+|+ ++
T Consensus 359 ~~~~~~~~~------------------~--------~~~~~l-----~---~~~v~~-----------~l~~~l~~~~~~ 393 (565)
T 2nxw_A 359 EPHAYPTGL------------------Q--------ADGEPI-----A---PMDIAR-----------AVNDRVRAGQEP 393 (565)
T ss_dssp CSSCCCCCC------------------C--------CSSSBC-----C---HHHHHH-----------HHHHHHHTTCCC
T ss_pred hhhhccccc------------------c--------CCCCcc-----C---HHHHHH-----------HHHHhcccccCC
Confidence 000000000 0 012345 6 778888 99999999 99
Q ss_pred EE-EECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccc
Q psy14416 726 VI-VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG 804 (1065)
Q Consensus 726 il-v~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1065)
+| +.|.|++. |..+++ . |. .+
T Consensus 394 iv~~~d~G~~~-~~~~~~--------~----~~---------------------------------------------~~ 415 (565)
T 2nxw_A 394 LLIAADMGDCL-FTAMDM--------I----DA---------------------------------------------GL 415 (565)
T ss_dssp CEEEECSSHHH-HHHTTS--------C----CS---------------------------------------------CE
T ss_pred EEEEecchHHH-HHHHhC--------C----Cc---------------------------------------------EE
Confidence 98 89988643 211000 0 00 00
Q ss_pred cCcccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheec
Q psy14416 805 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVES 884 (1065)
Q Consensus 805 ~~~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 884 (1065)
+ .+|.+|+| |+++++++ |++++.
T Consensus 416 ~--------------------------~~~~~g~m----------------------------G~~l~~A~--G~ala~- 438 (565)
T 2nxw_A 416 M--------------------------APGYYAGM----------------------------GFGVPAGI--GAQCVS- 438 (565)
T ss_dssp E--------------------------CCTTTCCT----------------------------TCHHHHHH--HHHHHT-
T ss_pred E--------------------------ccCccccc----------------------------cccchHHH--HHHHhC-
Confidence 0 02334555 88888876 888887
Q ss_pred cccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEE
Q psy14416 885 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 964 (1065)
Q Consensus 885 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1065)
|+++|+ +++|||+| +|+.++++++ .++++|++||
T Consensus 439 -------~~~~vv---------------------------------~i~GDG~~-~~~~~~l~ta-----~~~~l~~~iv 472 (565)
T 2nxw_A 439 -------GGKRIL---------------------------------TVVGDGAF-QMTGWELGNC-----RRLGIDPIVI 472 (565)
T ss_dssp -------TTCCEE---------------------------------EEEEHHHH-HHHGGGGGGH-----HHHTCCCEEE
T ss_pred -------CCCcEE---------------------------------EEEechHH-HhhHHHHHHH-----HHhCCCCEEE
Confidence 888999 99999999 8999999999 9999999999
Q ss_pred EEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHHHHHHHhcCCCCE-EEEE
Q psy14416 965 IVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPS-LINI 1043 (1065)
Q Consensus 965 v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~-li~~ 1043 (1065)
|+||+| |+.++.. ...+ .+...+.+||.++|++||+++++|++.+||+++|+++++. ++|. ||||
T Consensus 473 v~nN~~-~~~~~~~-----~~~~-------~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~-~gp~~liev 538 (565)
T 2nxw_A 473 LFNNAS-WEMLRTF-----QPES-------AFNDLDDWRFADMAAGMGGDGVRVRTRAELKAALDKAFAT-RGRFQLIEA 538 (565)
T ss_dssp EEECSB-CHHHHHH-----CTTC-------GGGBCCCCCHHHHTGGGTSEEEEECBHHHHHHHHHHHHHC-CSSCEEEEE
T ss_pred EEECCC-CcEEeee-----cccC-------CCCcCCCCCHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhc-CCCeEEEEE
Confidence 999998 3322211 0011 1223467899999999999999999999999999999986 7887 9999
Q ss_pred EeCCCCCCCcchh
Q psy14416 1044 LINPSADRKPQNF 1056 (1065)
Q Consensus 1044 ~~~~~~~~~~~~~ 1056 (1065)
.+++++..+..+.
T Consensus 539 ~~~~~~~~~~~~~ 551 (565)
T 2nxw_A 539 MIPRGVLSDTLAR 551 (565)
T ss_dssp ECCTTCCCHHHHH
T ss_pred EcccccCCHHHHH
Confidence 9999888665333
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-68 Score=649.14 Aligned_cols=517 Identities=16% Similarity=0.160 Sum_probs=403.4
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++++|++++.+. +|++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 4 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~ 82 (552)
T 1ovm_A 4 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELSA 82 (552)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHT
T ss_pred ccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHH
Confidence 47899999999999999999999999999999999764 7999999999999999999999999 999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCC----------CCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHE----------GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~----------g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
++||++|+.+++|||+|||++|.+++ +.+++| ||.++|+++|||++++++ +++++.+++|++.|.++
T Consensus 83 ~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~ 159 (552)
T 1ovm_A 83 MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRE 159 (552)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998653 445778 589999999999999999 99999999999999876
Q ss_pred CCCEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHH
Q psy14416 415 KPGVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASR 494 (1065)
Q Consensus 415 ~~GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae 494 (1065)
+ |||||+||.|++.++++.... +... ..+...+.++.+.++++++
T Consensus 160 ~-GPV~l~iP~d~~~~~~~~~~~---~~~~-------------------------------~~~~~~~~~~~~~i~~~~~ 204 (552)
T 1ovm_A 160 R-RPGYLMLPADVAKKAATPPVN---ALTH-------------------------------KQAHADSACLKAFRDAAEN 204 (552)
T ss_dssp T-CCEEEEEEHHHHHSBCCCCSS---CCCC-------------------------------CCCCCCHHHHHHHHHHHHH
T ss_pred C-CCEEEEeehhhccCccCCCcc---cccc-------------------------------cCCCCCccchHHHHHHHHH
Confidence 5 999999999997665432110 0000 0000111234567999999
Q ss_pred HHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeC
Q psy14416 495 LILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLG 566 (1065)
Q Consensus 495 ~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG 566 (1065)
+|+++|||+|++|.++.++++.+++++|+|++++||+++++|||.++++||+++|. ..++++++||+||.+|
T Consensus 205 ~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG 284 (552)
T 1ovm_A 205 KLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVG 284 (552)
T ss_dssp HHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEES
T ss_pred HHHhCCCCEEEECcCccccCHHHHHHHHHHHHCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEEC
Confidence 99999999999999987778889999999999999999999999999999999873 3567789999999999
Q ss_pred CccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHH
Q psy14416 567 ARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQ 646 (1065)
Q Consensus 567 ~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~ 646 (1065)
++++++.+.+|.. +.++.++||||.|+..+++.+..+ .+++.+|++|.+ +.... ..|.+.+++.
T Consensus 285 ~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~----~~~~~~l~~L~~-l~~~~--------~~~~~~~~~~-- 348 (552)
T 1ovm_A 285 TRFTDTLTAGFTH-QLTPAQTIEVQPHAARVGDVWFTG----IPMNQAIETLVE-LCKQH--------VHAGLMSSSS-- 348 (552)
T ss_dssp CCCCTTTTTTTCC-CCCTTTEEEECSSEEEETTEEEES----CCHHHHHHHHHH-HHHTS--------CCC---------
T ss_pred CCCCccccccccc-CCCCCeEEEEeCChheeCCcccCC----ccHHHHHHHHHh-Ccccc--------cchhhhhhhc--
Confidence 9999887766643 335678999999999888866544 356899999988 65211 2343222210
Q ss_pred hhhhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEE
Q psy14416 647 TNRQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 726 (1065)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~i 726 (1065)
... .. . ....++ + +..++. .|.+.+|++++
T Consensus 349 -~~~---~~-------------------~--------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~i 378 (552)
T 1ovm_A 349 -GAI---PF-------------------P--------QPDGSL-----T---QENFWR-----------TLQTFIRPGDI 378 (552)
T ss_dssp --------------------------------------CCSBC-----C---HHHHHH-----------HHHHHCCTTCE
T ss_pred -ccc---cc-------------------C--------CCCCcc-----C---HHHHHH-----------HHHHhcCCCCE
Confidence 000 00 0 112245 6 778888 99999999999
Q ss_pred EEECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccC
Q psy14416 727 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD 806 (1065)
Q Consensus 727 lv~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1065)
++.|+|++. |..+++.. + .+ +.
T Consensus 379 vv~d~G~~~-~~~~~~~~-----------~------------------------------------~~-------~~--- 400 (552)
T 1ovm_A 379 ILADQGTSA-FGAIDLRL-----------P------------------------------------AD-------VN--- 400 (552)
T ss_dssp EEECTTHHH-HHHTTCCC-----------C------------------------------------SS-------CE---
T ss_pred EEECCchHH-HHHHhccc-----------C------------------------------------CC-------Ce---
Confidence 999998644 22111100 0 00 00
Q ss_pred cccccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccc
Q psy14416 807 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGE 886 (1065)
Q Consensus 807 ~g~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 886 (1065)
++. ++-+|+| |+++++++ |++++.
T Consensus 401 ----------------------~~~-~~~~g~m----------------------------G~~l~~A~--G~a~a~--- 424 (552)
T 1ovm_A 401 ----------------------FIV-QPLWGSI----------------------------GYTLAAAF--GAQTAC--- 424 (552)
T ss_dssp ----------------------EEC-CTTTCCT----------------------------THHHHHHH--HHHHHC---
T ss_pred ----------------------EEe-chhhHhh----------------------------hhHHHHHH--HHHHhC---
Confidence 000 1224444 88888887 888887
Q ss_pred cccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEE
Q psy14416 887 VTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 966 (1065)
Q Consensus 887 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 966 (1065)
|+++|+ +++|||+| +|+.++++++ .++++|+++||+
T Consensus 425 -----~~~~vv---------------------------------~~~GDG~~-~~~~~el~ta-----~~~~l~~~ivv~ 460 (552)
T 1ovm_A 425 -----PNRRVI---------------------------------VLTGDGAA-QLTIQELGSM-----LRDKQHPIILVL 460 (552)
T ss_dssp -----TTSCEE---------------------------------EEEEHHHH-HHHTTHHHHH-----HHTTCCCEEEEE
T ss_pred -----CCCcEE---------------------------------EEECchHH-HhHHHHHHHH-----HHhCCCCEEEEE
Confidence 888999 99999999 9999999999 999999999999
Q ss_pred cCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCC----CeEeeCCHHHHHHHHHHHHhcCCCCEEEE
Q psy14416 967 NNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGH----DGYLCTTVPQIKQAMKKCLQTTTRPSLIN 1042 (1065)
Q Consensus 967 nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 1042 (1065)
||+|+ +... .. .+. ...+...+.+||.++|++||+ ++++|++.+||+++|+++++. ++|+|||
T Consensus 461 nN~~~-~~~~-----~~--~~~----~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~~~~~l~~al~~a~~~-~gp~lie 527 (552)
T 1ovm_A 461 NNEGY-TVER-----AI--HGA----EQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHH-ERLSLIE 527 (552)
T ss_dssp ESSSC-HHHH-----HH--SCT----TCGGGCCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTTC-SSEEEEE
T ss_pred ECCCC-eEEE-----ee--ccC----CCCcccCCCCCHHHHHHHhCCCcCCCEEEeCCHHHHHHHHHHHHhC-CCCEEEE
Confidence 99983 2110 00 011 001123467999999999999 999999999999999999876 8999999
Q ss_pred EEeCCCCCCCcchhhh
Q psy14416 1043 ILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1043 ~~~~~~~~~~~~~~~~ 1058 (1065)
|.+++++..+.....|
T Consensus 528 v~~~~~~~~~~l~~~~ 543 (552)
T 1ovm_A 528 VMLPKADIPPLLGALT 543 (552)
T ss_dssp EECCTTCCCHHHHHHH
T ss_pred EEcCcccCCHHHHHHH
Confidence 9999988876544433
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-67 Score=638.61 Aligned_cols=516 Identities=18% Similarity=0.212 Sum_probs=401.8
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++++++|++.|+++||+++||+||+++++|++++.++ +|++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 24 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~ 102 (570)
T 2vbf_A 24 MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSA 102 (570)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHH
Confidence 46899999999999999999999999999999999764 7999999999999999999999999 999999999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCC--C------CccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--F------QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga--~------Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||++|+.+++|||+|||++|..+.++++ + |..||.++|+++|||++++++ +++++.+++|++.|.+++
T Consensus 103 ~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~- 180 (570)
T 2vbf_A 103 INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER- 180 (570)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC-
Confidence 999999999999999999999987665443 1 222488999999999999999 999999999999999776
Q ss_pred CEEEEecChhhhhhccccccCCCCCCCCCCCCCCCchhhhhHhHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHH
Q psy14416 417 GVSYLDFPANLLAQRINQSALVPTPKVLEPTLPWPGIAELKQASQLILEAKAPLVIIGKVLEPTLPWPGIAELKQASRLI 496 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~ae~L 496 (1065)
|||||+||.|++..+++.... +.. + ..+...+.+ .+.+++++++|
T Consensus 181 GPV~l~iP~d~~~~~~~~~~~---~~~------~-------------------------~~~~~~~~~-~~~i~~~~~~l 225 (570)
T 2vbf_A 181 KPVYINLPVDVAAAKAEKPAL---SLE------K-------------------------ESSTTNTTE-QVILSKIEESL 225 (570)
T ss_dssp CCEEEEEEHHHHTSBCCCCSS---CCC-------------------------------------CHHH-HHHHHHHHHHH
T ss_pred CCEEEEcchhhhcCcccCCcc---ccc------c-------------------------cCCCCCccH-HHHHHHHHHHH
Confidence 999999999998766532110 000 0 000011112 57799999999
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhcCCCEEEEeCCc
Q psy14416 497 LEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQNADLVLLLGAR 568 (1065)
Q Consensus 497 ~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~~aDlVI~iG~~ 568 (1065)
+++|||+|++|.++.++++.+++++|+|++++||++++++||.++++||+++|. ..++++++||+||.+|++
T Consensus 226 ~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~ 305 (570)
T 2vbf_A 226 KNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVK 305 (570)
T ss_dssp HHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCC
T ss_pred HcCCCCEEEECcCccccChHHHHHHHHHHHCCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCC
Confidence 999999999999988778889999999999999999999999999999998763 345678899999999999
Q ss_pred cccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHhh
Q psy14416 569 LNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTN 648 (1065)
Q Consensus 569 ~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~~~~~~~~ 648 (1065)
+.++.+..|.. +.++.++|+||.|+.++++.+..++ |++.+|++|.+.+.. . . |. |+ ..
T Consensus 306 ~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~--------~-~-~~--~~----~~ 364 (570)
T 2vbf_A 306 LTDSSTGAFTH-HLDENKMISLNIDEGIIFNKVVEDF----DFRAVVSSLSELKGI--------E-Y-EG--QY----ID 364 (570)
T ss_dssp CCGGGTTTTCC-CCCGGGEEEECSSCEEETTEEECSS----CHHHHHHTGGGCCSC--------C-C-CS--CC----CC
T ss_pred ccccccccccc-CCCCCeEEEEeCCHHHhCCeeecCC----CHHHHHHHHHHhccc--------c-c-cc--cc----hh
Confidence 99887766654 3346789999999998887665443 789999988776641 0 1 21 10 00
Q ss_pred hhcccchhhhhhccCCccCCCCccccccccccCccccccceEEeecccccccccccccccccccchhhhhhcCCCcEEEE
Q psy14416 649 RQVKLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 728 (1065)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~g~L~~~LP~d~ilv 728 (1065)
++...+. ....++ + +..++. .|.+.+|++++|+
T Consensus 365 ~~~~~~~----------------------------~~~~~~-----~---~~~~~~-----------~l~~~l~~~~iv~ 397 (570)
T 2vbf_A 365 KQYEEFI----------------------------PSSAPL-----S---QDRLWQ-----------AVESLTQSNETIV 397 (570)
T ss_dssp CCCCCCC----------------------------CCSSBC-----C---HHHHHH-----------HHHHHCCSSEEEE
T ss_pred hhccccC----------------------------CCCCCc-----C---HHHHHH-----------HHHHhcCCCCEEE
Confidence 0000000 112245 6 778888 9999999999999
Q ss_pred ECCCCcCcccccchhhhccccccccccceEEEEeeCCCcccCCCcccccccccccccccccceeeeeecCCCcccccCcc
Q psy14416 729 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDET 808 (1065)
Q Consensus 729 ~d~G~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~n~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 808 (1065)
.|.|++. |..+++. ++ .+ +.
T Consensus 398 ~d~G~~~-~~~~~~~-----------~~------------------------------------~~-------~~----- 417 (570)
T 2vbf_A 398 AEQGTSF-FGASTIF-----------LK------------------------------------SN-------SR----- 417 (570)
T ss_dssp ECTTHHH-HHHTTSC-----------CC------------------------------------TT-------CE-----
T ss_pred EeCCHHH-HHHHhcc-----------cC------------------------------------CC-------Ce-----
Confidence 9998643 2111100 00 00 00
Q ss_pred cccccccccceeeccceEEEEEcCCcccccccccccceeecccceeeecceEEEEeccccccccccchhhhhheeccccc
Q psy14416 809 TYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT 888 (1065)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~n~Gi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 888 (1065)
.+. ++.+|+| |+++++++ |++++.
T Consensus 418 --------------------~~~-~~~~g~m----------------------------G~~l~~A~--Gaala~----- 441 (570)
T 2vbf_A 418 --------------------FIG-QPLWGSI----------------------------GYTFPAAL--GSQIAD----- 441 (570)
T ss_dssp --------------------EEC-CTTTCCT----------------------------TTHHHHHH--HHHHHC-----
T ss_pred --------------------Eec-Cccchhh----------------------------hhhHHHHH--HHHHhC-----
Confidence 000 2224445 88888887 899988
Q ss_pred cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcC
Q psy14416 889 TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNN 968 (1065)
Q Consensus 889 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn 968 (1065)
|+++|+ +++|||+| +|+.++++++ +++++|+++||+||
T Consensus 442 ---~~~~vv---------------------------------~~~GDG~~-~~~~~eL~ta-----~~~~l~~~ivv~nN 479 (570)
T 2vbf_A 442 ---KESRHL---------------------------------LFIGDGSL-QLTVQELGLS-----IREKLNPICFIINN 479 (570)
T ss_dssp ---TTSEEE---------------------------------EEEEHHHH-HHHGGGHHHH-----HHTTCCCEEEEEES
T ss_pred ---CCCcEE---------------------------------EEEcchhh-hcCHHHHHHH-----HHcCCCCEEEEEEC
Confidence 889999 99999999 9999999999 99999999999999
Q ss_pred CcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCC-----eEeeCCHHHHHHHHHHH-HhcCCCCEEEE
Q psy14416 969 NGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHD-----GYLCTTVPQIKQAMKKC-LQTTTRPSLIN 1042 (1065)
Q Consensus 969 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~l~~~~~~~-~~~~~~~~li~ 1042 (1065)
+|+ +... .+ . +. ...+...+.+||.++|++||++ +++|++.+||+++|+++ ++. ++|+|||
T Consensus 480 ~~~-~~~~-----~~-~-~~----~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~-~~p~lie 546 (570)
T 2vbf_A 480 DGY-TVER-----EI-H-GP----TQSYNDIPMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQADV-NRMYWIE 546 (570)
T ss_dssp SSC-HHHH-----HH-S-CT----TCGGGCCCCCCGGGHHHHTTCCTTTEEEEEECBHHHHHHHHHHHHHCT-TSEEEEE
T ss_pred Cch-HHHH-----HH-h-cc----CCCccCCCCCCHHHHHHHcCCCcCCcceEEecCHHHHHHHHHHHHhcC-CCcEEEE
Confidence 882 2111 00 0 10 0112234679999999999998 89999999999999985 554 8999999
Q ss_pred EEeCCCCCCCcchhhh
Q psy14416 1043 ILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1043 ~~~~~~~~~~~~~~~~ 1058 (1065)
|.+++++..+.....|
T Consensus 547 v~~~~~~~~~~~~~~~ 562 (570)
T 2vbf_A 547 LVLEKEDAPKLLKKMG 562 (570)
T ss_dssp EECCTTCCCHHHHHHH
T ss_pred EEcCcccccHHHHHHH
Confidence 9999998876644444
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=426.92 Aligned_cols=153 Identities=27% Similarity=0.391 Sum_probs=148.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|++|++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 1 m~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N 80 (549)
T 3eya_A 1 MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLH 80 (549)
T ss_dssp CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhh
Confidence 468999999999999999999999999999999999865 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++.+++++++.+++|++.|.++ +||
T Consensus 81 ~~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GP 154 (549)
T 3eya_A 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGV 154 (549)
T ss_dssp THHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSE
T ss_pred hHHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874 477
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=421.12 Aligned_cols=153 Identities=31% Similarity=0.498 Sum_probs=149.3
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 90 (590)
T 1ybh_A 11 PRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNL 90 (590)
T ss_dssp CEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHH
Confidence 47999999999999999999999999999999999764 69999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 91 ~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GP 164 (590)
T 1ybh_A 91 VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGP 164 (590)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHhhCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=420.84 Aligned_cols=156 Identities=25% Similarity=0.391 Sum_probs=148.1
Q ss_pred cccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCc
Q psy14416 4 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 81 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GP 81 (1065)
..+++|+++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+||
T Consensus 6 ~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGp 85 (603)
T 4feg_A 6 TKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGP 85 (603)
T ss_dssp ---CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTH
T ss_pred CCcCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCc
Confidence 44678999999999999999999999999999999999986 3799999999999999999999999999999999999
Q ss_pred chhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 82 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 82 G~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
|++|+++||++|+.+++|||+|+|++++...+++.+|++||.+++++++||++++.+++++++.+++|++.|.+ ++||
T Consensus 86 G~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GP 163 (603)
T 4feg_A 86 GGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGV 163 (603)
T ss_dssp HHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSE
T ss_pred hHHHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 4566
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=422.93 Aligned_cols=154 Identities=27% Similarity=0.432 Sum_probs=149.4
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..|+++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 80 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N 159 (677)
T 1t9b_A 80 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 159 (677)
T ss_dssp TTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHH
Confidence 45899999999999999999999999999999999975 46999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|++++...+++.||++||..++++++||++++++++++++.+++|++.|.++||||
T Consensus 160 ~~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGP 234 (677)
T 1t9b_A 160 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGP 234 (677)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=417.92 Aligned_cols=158 Identities=39% Similarity=0.691 Sum_probs=151.1
Q ss_pred CcccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 3 EDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 3 ~~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
++.++.|+++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.++||++|+|||+||+|+||||+||++|+|||
T Consensus 4 ~~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG 83 (568)
T 2c31_A 4 DDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPG 83 (568)
T ss_dssp ---CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHH
T ss_pred CcCCCcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 35678899999999999999999999999999999999998778999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCc--cCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g--~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++|+++|+.+++|||+|+|+++....+ ++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 84 ~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (568)
T 2c31_A 84 FLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGG 163 (568)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCce
Confidence 9999999999999999999999999998888 68999999999999999999999999999999999999999989888
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=413.31 Aligned_cols=154 Identities=29% Similarity=0.443 Sum_probs=144.6
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
..||++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 9 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (566)
T 1ozh_A 9 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNL 88 (566)
T ss_dssp EESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred ccCcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHH
Confidence 34899999999999999999999999999999999977779999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 89 ~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GP 162 (566)
T 1ozh_A 89 ITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGS 162 (566)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=415.62 Aligned_cols=155 Identities=41% Similarity=0.728 Sum_probs=150.2
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|..|+++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 5 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N 84 (564)
T 2q28_A 5 LQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLN 84 (564)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred cccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHH
Confidence 55689999999999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCc--cCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEG--IGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g--~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+ ++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 85 ~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 161 (564)
T 2q28_A 85 GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGG 161 (564)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999998877 78999999999999999999999999999999999999999989888
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=413.14 Aligned_cols=153 Identities=25% Similarity=0.356 Sum_probs=149.0
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhc-CCcEEEEEeCCcchhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLT-KKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~t-g~~gv~~~t~GPG~~N 85 (1065)
+|+++|+|++.|+++||++|||+||+.+++|+++|.+ .+|++|.++||++|+|||+||+|+| ||++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 5799999999999999999999999999999999975 4799999999999999999999999 8999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++.+++++++.+++|++.|.++||||
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GP 180 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGP 180 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=406.84 Aligned_cols=152 Identities=22% Similarity=0.331 Sum_probs=147.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
++|++++|++.|+++||++|||+||+.+++|+++|. .+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~ 79 (528)
T 1q6z_A 1 MASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAM 79 (528)
T ss_dssp -CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTH
T ss_pred CCcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHH
Confidence 368999999999999999999999999999999994 5799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|+|++++...+++.+|+ +||.+++++++||+.++++++++++.+++|++.|.++||||
T Consensus 80 ~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GP 153 (528)
T 1q6z_A 80 GALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGP 153 (528)
T ss_dssp HHHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999 79999999999999999999999999999999999999988
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=405.46 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=146.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..++++++|++.|+++||++|||+||+.+++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 9 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N 88 (578)
T 3lq1_A 9 VLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAAN 88 (578)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhh
Confidence 35789999999999999999999999999999999986 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHH-------HHHHHHHHhhcCCC
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQ-------HVEKAVRLSTFGKP 158 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~-------~l~~A~~~A~~~rp 158 (1065)
+++||++|+.+++|||+|+|+++....+++.||++||.+++++++||++++++++++++ .+++|++.|.++||
T Consensus 89 ~~~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~ 168 (578)
T 3lq1_A 89 YFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPR 168 (578)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred hhHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999998764 89999999988765
Q ss_pred cc
Q psy14416 159 GR 160 (1065)
Q Consensus 159 GP 160 (1065)
||
T Consensus 169 GP 170 (578)
T 3lq1_A 169 GP 170 (578)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=402.08 Aligned_cols=155 Identities=27% Similarity=0.372 Sum_probs=150.5
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|++|+++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 80 (563)
T 2uz1_A 1 MAMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTN 80 (563)
T ss_dssp -CEEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHT
T ss_pred CCccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHH
Confidence 56799999999999999999999999999999999998667999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcc-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+++.+|+ +||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 81 ~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GP 156 (563)
T 2uz1_A 81 AVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGP 156 (563)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCce
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999988888
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=401.46 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=138.8
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
..+|++|+|++.|+++||++|||+||+.+++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 6 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N 85 (556)
T 3hww_A 6 FNRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVAN 85 (556)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHT
T ss_pred hhhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHh
Confidence 35799999999999999999999999999999999965 57999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCccc------HHHHHHHHHH
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL------IGQHVEKAVR 151 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~------i~~~l~~A~~ 151 (1065)
+++||++|+.+++|||+|||++++...+++.||++||.+++++++||++++.++++ +++.+++|++
T Consensus 86 ~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~ 157 (556)
T 3hww_A 86 LYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALG 157 (556)
T ss_dssp THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999875 8888888884
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=405.16 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=145.7
Q ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 9 ~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
++++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 31 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~ 110 (604)
T 2x7j_A 31 THYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFY 110 (604)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHH
Confidence 5899999999999999999999999999999999764 699999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCccc-------HHHHHHHHHHHhhcCCCcc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHL-------IGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~-------i~~~l~~A~~~A~~~rpGP 160 (1065)
+||++|+.+++|||+|||+++....+++.+|++||.+++++++||+++++++++ +++.+++|++.|.++||||
T Consensus 111 ~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GP 190 (604)
T 2x7j_A 111 PAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGP 190 (604)
T ss_dssp HHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCE
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCc
Confidence 999999999999999999999999999999999999999999999999999998 9999999999998865444
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=399.16 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=148.2
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcch
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGL 83 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~ 83 (1065)
|..|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||+
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~ 80 (589)
T 2pgn_A 1 MAIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGN 80 (589)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGG
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchH
Confidence 5678999999999999999999999999999999999864 69999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcccCCCcEEEEecCCCCCcCccC-CCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 84 LHTFGGMANAQINCWPMLVIGGSCAQDHEGIG-GFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 84 ~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~-~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+|+++||++|+.+++|||+|+|+++....+++ .+|++||.. +++++||++++++++++++.+++|++.|.++||||
T Consensus 81 ~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 157 (589)
T 2pgn_A 81 LLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGP 157 (589)
T ss_dssp GGCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCE
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999 999999999 99999999999999999999999999999887777
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=395.29 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=145.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCC-hHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIP-VIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~-~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++++|++.|+++||++|||+||+. +++|+++|. . |++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL 88 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence 479999999999999999999999999 999999998 4 9999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCcc-CCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGI-GGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~-~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
++|+++|+.+++|||+|+|+++....++ +.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 163 (573)
T 2iht_A 89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGP 163 (573)
T ss_dssp HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCC
T ss_pred HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999998866544
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=395.46 Aligned_cols=153 Identities=21% Similarity=0.317 Sum_probs=146.9
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC--CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE--GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~--~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
+|+++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 47999999999999999999999999999999999764 7999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGR 160 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP 160 (1065)
+++||++|+.+++|||+|+|+++....+++.+|++||.+++++++||++++++++++++.+++|++.|.++||||
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GP 157 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVA 157 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776544
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=394.39 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=141.4
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 58999999999999999999999999999999999864 7999999999999999999999999 999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC--Cc-----c-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ-----E-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q-----~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+++....+++. +| + .||.+++++++||++++++++++++.+++|++.|.++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999998876653 22 3 38999999999999999999999999999999998875
Q ss_pred cc
Q psy14416 159 GR 160 (1065)
Q Consensus 159 GP 160 (1065)
||
T Consensus 160 GP 161 (568)
T 2wvg_A 160 KP 161 (568)
T ss_dssp CC
T ss_pred CC
Confidence 77
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=394.27 Aligned_cols=151 Identities=16% Similarity=0.224 Sum_probs=141.1
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 58999999999999999999999999999999999865 6999999999999999999999999 999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC--Cc-----c-cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ-----E-CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q-----~-~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+++....+++. +| + .||.+++++++||++++++++++++.+++|++.|.++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999998877654 22 3 38999999999999999999999999999999998765
Q ss_pred cc
Q psy14416 159 GR 160 (1065)
Q Consensus 159 GP 160 (1065)
||
T Consensus 160 GP 161 (566)
T 2vbi_A 160 KP 161 (566)
T ss_dssp CC
T ss_pred CC
Confidence 66
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=395.25 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=140.6
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
|++|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++
T Consensus 1 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~ 79 (563)
T 2vk8_A 1 MSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGEL 79 (563)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHH
Confidence 4678999999999999999999999999999999999864 6999999999999999999999999 9999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcC----------ccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhh
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHE----------GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLST 154 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~----------g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~ 154 (1065)
|+++||++|+.+++|||+|+|+++.... +.+.+| ||.+++++++||+.++++++++++.+++|++.|.
T Consensus 80 N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~ 157 (563)
T 2vk8_A 80 SALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTY 157 (563)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997653 456777 5889999999999999999999999999999998
Q ss_pred cCCCcc
Q psy14416 155 FGKPGR 160 (1065)
Q Consensus 155 ~~rpGP 160 (1065)
+++ ||
T Consensus 158 ~~~-GP 162 (563)
T 2vk8_A 158 VTQ-RP 162 (563)
T ss_dssp HHT-SC
T ss_pred hCC-CC
Confidence 764 66
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=390.98 Aligned_cols=156 Identities=18% Similarity=0.230 Sum_probs=142.3
Q ss_pred cccccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCC-CeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcc
Q psy14416 4 DYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEG-IHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPG 82 (1065)
Q Consensus 4 ~~~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~-i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG 82 (1065)
..+.+|+++++|++.|+++||++|||+||+.+++|+++|.+.+ +++|.++||++|+|||+||+|+||||+||++|+|||
T Consensus 16 ~~~~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG 95 (565)
T 2nxw_A 16 PRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAG 95 (565)
T ss_dssp CCSCCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHH
T ss_pred cCCCCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCC
Confidence 4467799999999999999999999999999999999997654 689999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCC-----cccc-hhhhcccccceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 83 LLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGF-----QECP-QVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 83 ~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~-----Q~~d-q~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
++|+++||++|+.+++|||+|+|+++....+++.+ |++| |.+++++++||++++++++++++.+++|++.|.++
T Consensus 96 ~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 175 (565)
T 2nxw_A 96 AFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ 175 (565)
T ss_dssp HHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998887764 6788 99999999999999999999999999999999875
Q ss_pred CCcc
Q psy14416 157 KPGR 160 (1065)
Q Consensus 157 rpGP 160 (1065)
|||
T Consensus 176 -~GP 178 (565)
T 2nxw_A 176 -SRP 178 (565)
T ss_dssp -TCC
T ss_pred -CCC
Confidence 477
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=381.63 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=138.5
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
++.|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| ++||++|+|||++
T Consensus 2 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~ 80 (552)
T 1ovm_A 2 RTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGEL 80 (552)
T ss_dssp -CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHH
Confidence 3468999999999999999999999999999999999864 6999999999999999999999999 9999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcC----------ccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhh
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHE----------GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLST 154 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~----------g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~ 154 (1065)
|+++|+++|+.+++|||+|+|+++.... +.+.+| ||.+++++++||++++++ +++++.+++|++.|.
T Consensus 81 N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~ 157 (552)
T 1ovm_A 81 SAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTML 157 (552)
T ss_dssp HTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHH
Confidence 9999999999999999999999997654 345677 488999999999999999 999999999999998
Q ss_pred cCCCcc
Q psy14416 155 FGKPGR 160 (1065)
Q Consensus 155 ~~rpGP 160 (1065)
++| ||
T Consensus 158 ~~~-GP 162 (552)
T 1ovm_A 158 RER-RP 162 (552)
T ss_dssp HHT-CC
T ss_pred hCC-CC
Confidence 764 77
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=379.40 Aligned_cols=150 Identities=18% Similarity=0.234 Sum_probs=137.2
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+|+++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 24 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~ 102 (570)
T 2vbf_A 24 MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSA 102 (570)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHH
Confidence 47999999999999999999999999999999999864 7999999999999999999999999 999999999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC--Cc-----cc-chhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG--FQ-----EC-PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~--~Q-----~~-dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+++....+++. +| ++ +|.+++++++||++++++ +++++.+++|++.|.++|
T Consensus 103 ~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~- 180 (570)
T 2vbf_A 103 INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER- 180 (570)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC-
Confidence 999999999999999999999987665443 33 23 488999999999999999 999999999999998654
Q ss_pred cc
Q psy14416 159 GR 160 (1065)
Q Consensus 159 GP 160 (1065)
||
T Consensus 181 GP 182 (570)
T 2vbf_A 181 KP 182 (570)
T ss_dssp CC
T ss_pred CC
Confidence 55
|
| >3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-15 Score=150.24 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCc--cc--ccHH-------HH-
Q psy14416 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHP--NC--VSAA-------RT- 553 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hp--l~--lg~~-------~~- 553 (1065)
..++++++++|++||||+|++|+++.++++.+++++|+|++|+||++|.++||.++++|| ++ +|.. .+
T Consensus 21 ~~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~ 100 (170)
T 3cf4_G 21 AVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWP 100 (170)
T ss_dssp ECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhh
Confidence 345899999999999999999999988888999999999999999999999999999999 99 7742 23
Q ss_pred --hhhcCCCEEEEeCCcc--ccccccCCCccccCCCeEEEecCChh-hcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 554 --HALQNADLVLLLGARL--NWILHFGRAPRFKSNVKIIQVDLNAE-ELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 554 --~al~~aDlVI~iG~~~--~~~~~~g~~~~~~~~~~iI~Vd~d~~-~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
+++++||+||.+|+++ ++..+..+. .+.+ .++|+++.+.. ..+..+ ..+ ..+++++.|.+.+
T Consensus 101 ~~~~~~~aDlvl~iG~~~~~~~~~t~~~~-~~~~-~~iI~i~~~~~~~~~~~~-~~l----~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 101 GLDGNGNYDMIITIGFKKFYINQVLSAAK-NFSN-LKTIAIERGYIQNATMSF-GNL----SKADHYAALDELI 167 (170)
T ss_dssp CSSSSCCCSEEEEESCCHHHHHHHHHHHH-HHCC-CCEEECSSSCCTTSSEEC-CCC----CHHHHHHHHHHHH
T ss_pred HHHHhhcCCEEEEECCccCcccccccccc-ccCC-CeEEEECCCcccchhhhh-ccC----CHHHHHHHHHHHH
Confidence 6688999999999999 766544332 2334 67775554321 111111 111 4577887776654
|
| >1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-14 Score=145.54 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=81.1
Q ss_pred HHHH-HHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCC-CC-c--cccc--HHHHhhh-----
Q psy14416 489 LKQA-SRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPD-AH-P--NCVS--AARTHAL----- 556 (1065)
Q Consensus 489 v~~~-ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~-~h-p--l~lg--~~~~~al----- 556 (1065)
++++ +++|++||||+|++|+ +..+++.++|++|+|+ ++||++|.+++|.+++ +| | +.+| ...+...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~~~~g~~~~~~~~~ 101 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWK 101 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccccHHHHHHhhhhhhh
Confidence 5788 9999999999999999 9888889999999999 9999999999999999 88 8 5566 3334333
Q ss_pred -----cCCCEEEEeCCccccccc-cCCCccccCCCeEEEec
Q psy14416 557 -----QNADLVLLLGARLNWILH-FGRAPRFKSNVKIIQVD 591 (1065)
Q Consensus 557 -----~~aDlVI~iG~~~~~~~~-~g~~~~~~~~~~iI~Vd 591 (1065)
++|||||.+|+++++... .+.+..|.+++++||||
T Consensus 102 ~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 102 GFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp CTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 899999999999973221 12223344678899875
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-12 Score=147.80 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=125.3
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc----CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccc
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 339 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~----~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGp 339 (1065)
...+++.+++++.+.+.|++++||.||++.+++.+.+.+ .+++++.+.||.+|..||.|+++..+| ++..|+||
T Consensus 20 ~~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~ 97 (395)
T 1yd7_A 20 PDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGP 97 (395)
T ss_dssp EEEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETT
T ss_pred eEEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCch
Confidence 346799999999999999999999999999999888743 579999999999999999999999888 55689999
Q ss_pred cccccccccccccccCcceEeecCCCccCCCCCCCCCcc-Chh--hhhc--ccccEEeeCCChhhHHHHHHHHHHHhhcC
Q psy14416 340 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQEC-PQV--ELAR--PYCKYSARPPNIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 340 G~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~i-dQ~--~l~~--~~~k~s~~l~~~~~i~~~i~~A~~~A~~~ 414 (1065)
|+.+++.++.+|...++|+|+++++++....+.+..++- |.. ...+ ++.++.....+++++...+..|++.|...
T Consensus 98 G~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~ 177 (395)
T 1yd7_A 98 GFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKY 177 (395)
T ss_dssp HHHHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776554444443 221 2222 56788899999999999999999999866
Q ss_pred CCCEEEEecChhhhh
Q psy14416 415 KPGVSYLDFPANLLA 429 (1065)
Q Consensus 415 ~~GPV~L~iP~Dv~~ 429 (1065)
+ .||.+.+|.++..
T Consensus 178 ~-~PVi~~~~~~l~h 191 (395)
T 1yd7_A 178 R-TPVILLTDAEVGH 191 (395)
T ss_dssp T-SEEEEEECHHHHH
T ss_pred C-CCEEEEcchhHhC
Confidence 5 8999999988643
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=145.80 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=118.1
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh----CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCc
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ----EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGP 81 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~----~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GP 81 (1065)
...|++.|++++.+.+.|++.+||+||+...++.+.|.+ .+++++.++||.+|+.||.|+++..+| +|..++||
T Consensus 20 ~~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~ 97 (395)
T 1yd7_A 20 PDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGP 97 (395)
T ss_dssp EEEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETT
T ss_pred eEEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCch
Confidence 345899999999999999999999999999999988853 579999999999999999999999888 55679999
Q ss_pred chhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccch-hhh--cc--cccceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 82 GLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQ-VEL--AR--PYCKYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 82 G~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq-~~l--~~--~itk~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
|+.++..+|..|...++|+++++++.+....+...+++-++ ..+ .. ++.+......+++++...+..|++.|...
T Consensus 98 G~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~ 177 (395)
T 1yd7_A 98 GFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKY 177 (395)
T ss_dssp HHHHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988776655444444422 121 22 56788999999999999999999999877
Q ss_pred CCccccc
Q psy14416 157 KPGRSLL 163 (1065)
Q Consensus 157 rpGP~~l 163 (1065)
+ .|+++
T Consensus 178 ~-~PVi~ 183 (395)
T 1yd7_A 178 R-TPVIL 183 (395)
T ss_dssp T-SEEEE
T ss_pred C-CCEEE
Confidence 6 88775
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-10 Score=138.25 Aligned_cols=240 Identities=14% Similarity=0.091 Sum_probs=144.7
Q ss_pred cccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchh---
Q psy14416 174 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGFDEATY--- 248 (1065)
Q Consensus 174 ~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~--- 248 (1065)
....|+||+++|+|+|+++|.++..++++|||++|||+|+ |+.++|.+++++++|+++| +||++| +++.+..
T Consensus 119 ~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~I-vnnN~~--~i~~~~~~~~ 195 (629)
T 2o1x_A 119 AITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIV-LNDNEM--SISENVGAMN 195 (629)
T ss_dssp CSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE-EEECSB--SSSBCCSSHH
T ss_pred CcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE-EECCCC--CCCCChhHHH
Confidence 3457999999999999999987778999999999999999 7789999999999997655 555566 4322110
Q ss_pred --------------------------------------hhh---------hhhhccCCCcccccCccHHHHHHHHHHhc-
Q psy14416 249 --------------------------------------AWL---------DIIKKSNMSEDYDEELSANQVIAQALKFQ- 280 (1065)
Q Consensus 249 --------------------------------------~~~---------~l~~~~g~~~~~~~~~~~~~~l~~~L~~~- 280 (1065)
++. +++..++.......+-...+.|.++|++.
T Consensus 196 ~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~ 275 (629)
T 2o1x_A 196 KFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLV 275 (629)
T ss_dssp HHC---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHT
T ss_pred HHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHH
Confidence 111 11112221110000001223333333321
Q ss_pred ---Cce-----------------------------------------------------------EEEee----cC-Cch
Q psy14416 281 ---GIE-----------------------------------------------------------YVFGI----VG-IPV 293 (1065)
Q Consensus 281 ---GV~-----------------------------------------------------------~vfg~----pG-~~~ 293 (1065)
|-. .++.+ ++ ...
T Consensus 276 ~~~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~ 355 (629)
T 2o1x_A 276 DLDGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGL 355 (629)
T ss_dssp TSSSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCCBCCCCCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTC
T ss_pred hcCCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCcccccchHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcCh
Confidence 100 11111 11 111
Q ss_pred hhhHHHhhcCCceEEE-ccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc-cccccccCcceEeecCCCccCCCC
Q psy14416 294 IELAMACQQEGIHYIG-MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG-MANAQINCWPMLVIGGSCAQDHEG 371 (1065)
Q Consensus 294 ~~l~~al~~~~i~~i~-~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a-v~eA~~~~vPLlvItg~~p~~~~g 371 (1065)
..+...+ .=|++. ...|+++.-+|.|.|.. |.-. +..+..+.+.-++-- +..+-..+.|++++......--.+
T Consensus 356 ~~f~~~~---~~r~~~~gIaE~~~~~~a~G~A~~-G~rp-~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~d 430 (629)
T 2o1x_A 356 VEFSRVH---PHRYLDVGIAEEVAVTTAAGMALQ-GMRP-VVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGAD 430 (629)
T ss_dssp HHHHHHC---GGGEEECCSCHHHHHHHHHHHHHT-TCEE-EEEEEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTT
T ss_pred HHHHHhc---CcceEeccccHHHHHHHHHHHHHc-CCEE-EEEecHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCC
Confidence 1111111 124554 45899999999999986 5423 334466665433322 455677899999887443332111
Q ss_pred CCCCCccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 372 IGGFQECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 372 ~ga~Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
-..+|.+.+..+++.+..+.. ...++.++...+..|++. ++||+|-+|..
T Consensus 431 G~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~-----~~Pv~i~~~r~ 481 (629)
T 2o1x_A 431 GATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH-----DGPFAIRYPRG 481 (629)
T ss_dssp CTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS-----SSCEEEECCSS
T ss_pred CcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC-----CCCEEEEecCC
Confidence 235666777799999887754 566777888888888764 58999999854
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-09 Score=130.27 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=140.3
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhh----
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGFDEATYA---- 249 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~---- 249 (1065)
..|+||+++|.|+|+++|.++..++++|||++|||+|+ |+.++|.+++++++|+++|+ ||++| +++.+...
T Consensus 119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vv-nnN~~--~i~~~~~~~~~~ 195 (621)
T 2o1s_A 119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVIL-NDNEM--SISENVGALNNH 195 (621)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEE-EECC---------------
T ss_pred CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEE-eCCCc--ccCCCcchHHHH
Confidence 37999999999999999987778999999999999999 66889999999999987665 55566 44321110
Q ss_pred ---------h----------------------------------hhhhhccCCCcccccCccHHHHHHHHHHh----cCc
Q psy14416 250 ---------W----------------------------------LDIIKKSNMSEDYDEELSANQVIAQALKF----QGI 282 (1065)
Q Consensus 250 ---------~----------------------------------~~l~~~~g~~~~~~~~~~~~~~l~~~L~~----~GV 282 (1065)
| ..++..++.......+-...+.|.++|++ .|-
T Consensus 196 ~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~~gP 275 (621)
T 2o1s_A 196 LAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGP 275 (621)
T ss_dssp -------------------------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHSCSE
T ss_pred HHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHcCCC
Confidence 0 01111111110000011123344444432 221
Q ss_pred e--EEE-----eec------------------------CCc-hhhhHH----Hh----hc-CCc----------------
Q psy14416 283 E--YVF-----GIV------------------------GIP-VIELAM----AC----QQ-EGI---------------- 305 (1065)
Q Consensus 283 ~--~vf-----g~p------------------------G~~-~~~l~~----al----~~-~~i---------------- 305 (1065)
. ++. |.+ +.. ...+.+ ++ ++ +.+
T Consensus 276 ~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~ 355 (621)
T 2o1s_A 276 QFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEF 355 (621)
T ss_dssp EEEEEECCCTTCCCCC--------------------------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHH
T ss_pred EEEEEEEecccCCChhhcCchhccCCCCCCCCcCcccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHH
Confidence 1 010 111 000 001111 11 11 111
Q ss_pred ------eEEE-ccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc-cccccccCcceEeecCCCccCCCCCCCCCc
Q psy14416 306 ------HYIG-MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG-MANAQINCWPMLVIGGSCAQDHEGIGGFQE 377 (1065)
Q Consensus 306 ------~~i~-~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a-v~eA~~~~vPLlvItg~~p~~~~g~ga~Q~ 377 (1065)
|++. ...|+++.-+|.|+|.. |. ..+..+.++.+.-++-- +..+-..+.|++++.......-..-..+|.
T Consensus 356 ~~~~~~r~~~~gIaE~~~~~~a~G~A~~-G~-rp~~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~ 433 (621)
T 2o1s_A 356 SRKFPDRYFDVAIAEQHAVTFAAGLAIG-GY-KPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG 433 (621)
T ss_dssp HHHCTTTEEECCSCHHHHHHHHHHHHHT-TC-EEEEEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB
T ss_pred HHhCCCceEecCcCHHHHHHHHHHHHHC-CC-EEEEEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc
Confidence 3554 45899999999999986 54 33334477766433322 455677899999887443332111124565
Q ss_pred cChhhhhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 378 CPQVELARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 378 idQ~~l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
+.+..+++.+..+. +...++.++...+..|++.+ .+||+|-.|..
T Consensus 434 ~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~----~~Pv~i~~~r~ 479 (621)
T 2o1s_A 434 AFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN----DGPSAVRYPRG 479 (621)
T ss_dssp CSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC----SSCEEEECCSS
T ss_pred hHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC----CCCEEEEeCCC
Confidence 66678888887764 45667788888888777643 58999999854
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=129.90 Aligned_cols=243 Identities=16% Similarity=0.156 Sum_probs=148.6
Q ss_pred cccCCCcchhHHHHHHhhhcccC-CCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecccc------c
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGFDE------A 246 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~-p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~------~ 246 (1065)
..|+||+++|.|+|+++|....+ ++++|+|++|||+++ |+.++|.++.++++|.+++|+||++| +++. .
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~--~i~~~~~~~~~ 196 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRL--GQSDPAPLQHQ 196 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSB--CSSSBCTTTTC
T ss_pred cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCC--CCcCCcccccC
Confidence 46899999999999999965433 369999999999999 88999999999999999999998887 1100 0
Q ss_pred hhhhhhhhhccCCC---------------------------------------cccc-----------------------
Q psy14416 247 TYAWLDIIKKSNMS---------------------------------------EDYD----------------------- 264 (1065)
Q Consensus 247 ~~~~~~l~~~~g~~---------------------------------------~~~~----------------------- 264 (1065)
.+++.+.+..++.. ++..
T Consensus 197 ~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~~~~P~lI~v~T~kg~G~~~~e~~~~~Hg~~~~~~~~~~~~~~~~~~~ 276 (616)
T 3mos_A 197 MDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQI 276 (616)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSCCSSCEEEEEECCTTTTSTTTTTCSSCTTCCCCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhcCCCCEEEEEEEecccccccccCchhhcCCCCCHHHHHHHHHHHHHHH
Confidence 01111111110000 0000
Q ss_pred ----------------------------------cCccHHHHHHHHHH---hcCceEEEeecCCchhhhHHHhhc-CCce
Q psy14416 265 ----------------------------------EELSANQVIAQALK---FQGIEYVFGIVGIPVIELAMACQQ-EGIH 306 (1065)
Q Consensus 265 ----------------------------------~~~~~~~~l~~~L~---~~GV~~vfg~pG~~~~~l~~al~~-~~i~ 306 (1065)
..+..-+++.++|. +..=+-+.+.+..........+.+ ..=|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p~R 356 (616)
T 3mos_A 277 QSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDR 356 (616)
T ss_dssp CCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCGGG
T ss_pred HhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCCCC
Confidence 00000022222221 122222333332221122222322 1125
Q ss_pred EEE-ccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeecCCCccCC-CCCCCCCccChhhhh
Q psy14416 307 YIG-MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVELA 384 (1065)
Q Consensus 307 ~i~-~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~-~g~ga~Q~idQ~~l~ 384 (1065)
++. ...|+++.-+|.|+|.. |...++..|.++.+.-++..|..+...+.|++++........ .+-..+|.+.+..++
T Consensus 357 ~~d~gIaE~~~v~~a~G~A~~-G~~~~~~~~f~~Fl~~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l 435 (616)
T 3mos_A 357 FIECYIAEQNMVSIAVGCATR-NRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMF 435 (616)
T ss_dssp EEECCSCHHHHHHHHHHHHGG-GCCEEEEEEEGGGGGGGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHH
T ss_pred eEEcCccHHHHHHHHHHHHHc-CCCCEEEEehHHHHHHHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHh
Confidence 664 46999999999999975 443455678899998888999888889999887643222211 111246778888999
Q ss_pred cccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 385 RPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 385 ~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
+.+..... ...++.++...++.|+ . .+||++|..|.+
T Consensus 436 ~~iP~l~V~~P~d~~e~~~~l~~a~----~-~~gp~~ir~~r~ 473 (616)
T 3mos_A 436 RSVPTSTVFYPSDGVATEKAVELAA----N-TKGICFIRTSRP 473 (616)
T ss_dssp HTSTTEEEECCCSHHHHHHHHHHHH----T-CCSEEEEECCSS
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHH----h-cCCCEEEEEeCC
Confidence 99887654 4456666655555444 2 359999998854
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-10 Score=146.08 Aligned_cols=152 Identities=11% Similarity=-0.003 Sum_probs=109.8
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh---C---C-----CeEEEecChhhHHHHHHHHHHhcCCcEE
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ---E---G-----IHYIGMRNEQAACYAAQAIGYLTKKPGV 74 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~---~---~-----i~~v~~rhE~~A~~mA~gyar~tg~~gv 74 (1065)
+..|++.|+++... ..|++.+++.|+++..++.+.+.+ . + ..++...+|.+|..||.|.+. +|...+
T Consensus 4 ~~~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~-aGaR~~ 81 (1231)
T 2c42_A 4 MMTTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALA-AGALTT 81 (1231)
T ss_dssp EEEEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHH-TTCCEE
T ss_pred eEEccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHH-cCChHh
Confidence 45689999999986 779999999999999999988841 1 2 489999999999999999665 565555
Q ss_pred EEEeCCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccce-eccCCCcccHHHHHHHHHHHh
Q psy14416 75 CLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLS 153 (1065)
Q Consensus 75 ~~~t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A 153 (1065)
+ .|+|||+.-+...|..+...+.|+++...+.+....+...+.+-++ .++.-.+.| .....++.++...+..|+..|
T Consensus 82 t-~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd-~~~ar~~G~~vl~pss~QEa~dl~~~Af~lA 159 (1231)
T 2c42_A 82 T-FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQD-IYAARQTGFAMLASSSVQEAHDMALVAHLAA 159 (1231)
T ss_dssp E-EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCCSHH-HHTTTTSSCEEEECCSHHHHHHHHHHHHHHH
T ss_pred h-hccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCchhh-HHHHhcCCcEEEECCCHHHHHHHHHHHHHHH
Confidence 4 4899999999999977666789999999887654333222111111 122222333 344567788888888998888
Q ss_pred hcCCCcccc
Q psy14416 154 TFGKPGRSL 162 (1065)
Q Consensus 154 ~~~rpGP~~ 162 (1065)
...+ -|++
T Consensus 160 ek~~-~PVi 167 (1231)
T 2c42_A 160 IESN-VPFM 167 (1231)
T ss_dssp HHHC-CCEE
T ss_pred HHcC-CCEE
Confidence 7543 4433
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=122.54 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccH--HHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG--MELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~--~eL~t~vr~~lpivivV 233 (1065)
++.+|.|+...... + . ...|+||+++|.|+|+++|.+...++++|||++|||+|+|.. ++|.++.++++|+++||
T Consensus 143 G~~~~~H~~~~~~~-~-~-~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv 219 (400)
T 2bfd_A 143 GRQMPVHYGCKERH-F-V-TISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219 (400)
T ss_dssp TCSCSSCCCBTTTT-B-C-CCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcCCcccccC-c-c-ccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEE
Confidence 45566665432211 2 2 235999999999999999977667799999999999999987 99999999999999999
Q ss_pred EcCCeeeecccc
Q psy14416 234 VNNNGIYGGFDE 245 (1065)
Q Consensus 234 ~NN~gy~~g~~~ 245 (1065)
.|| +| +++.
T Consensus 220 ~NN-~~--~i~~ 228 (400)
T 2bfd_A 220 RNN-GY--AIST 228 (400)
T ss_dssp EEC-SE--ETTE
T ss_pred ECC-ce--eeee
Confidence 998 56 5543
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-09 Score=125.03 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=69.5
Q ss_pred EEeccccccCcc-hhh-HHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFD-ETT-YASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||+| ++. .++ +.++ .++++|+++||.|| + |+..... .. ..+..||.+++
T Consensus 171 ~i~GDGa~-~~G~~~Eal~~A-----~~~~lpvi~vv~NN-~-~gi~~~~--~~---------------~~~~~d~~~~a 225 (367)
T 1umd_A 171 CTFGDGAT-SEGDWYAGINFA-----AVQGAPAVFIAENN-F-YAISVDY--RH---------------QTHSPTIADKA 225 (367)
T ss_dssp EEEETGGG-GSHHHHHHHHHH-----HHTTCSEEEEEEEC-S-EETTEEH--HH---------------HCSSSCSGGGG
T ss_pred EEEccccc-ccCcHHHHHHHH-----HHhCcCEEEEEecC-C-eeeccCh--hh---------------ccCCCCHHHHH
Confidence 99999999 777 777 8888 88999977666666 5 4432110 00 01346899999
Q ss_pred HHcCCCeEeeCCHHHH------HHHHHHHHhcCCCCEEEEEEeCCC
Q psy14416 1009 AVFGHDGYLCTTVPQI------KQAMKKCLQTTTRPSLINILINPS 1048 (1065)
Q Consensus 1009 ~~~g~~~~~~~~~~~l------~~~~~~~~~~~~~~~li~~~~~~~ 1048 (1065)
++||+.+++|++.+.+ ++|++++.+. ++|+|||+.+.+.
T Consensus 226 ~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~-~gP~lIe~~t~r~ 270 (367)
T 1umd_A 226 HAFGIPGYLVDGMDVLASYYVVKEAVERARRG-EGPSLVELRVYRY 270 (367)
T ss_dssp GGTTSCEEEEETTCHHHHHHHHHHHHHHHHTT-CCCEEEEEECCCC
T ss_pred HHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEEeecC
Confidence 9999999999987776 6677766655 8999999999773
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=125.72 Aligned_cols=116 Identities=13% Similarity=-0.062 Sum_probs=80.3
Q ss_pred eEEEc-cCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEee-cCCCccCCCCCCCCCccChhhh
Q psy14416 306 HYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI-GGSCAQDHEGIGGFQECPQVEL 383 (1065)
Q Consensus 306 ~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvI-tg~~p~~~~g~ga~Q~idQ~~l 383 (1065)
|++.+ ..|++++-+|.|+|..-|. -.+..|+.+.+.=+..++..+-..+.|++++ |.+...--.+-..+|.+.+..+
T Consensus 398 R~i~~gIaE~~~~~~a~GlA~~Gg~-~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~ 476 (651)
T 2e6k_A 398 RYLHFGVREHAMGAILNGLNLHGGY-RAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMS 476 (651)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSC-EEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH
T ss_pred ceEecCcCHHHHHHHHHHHHHcCCC-EEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHHH
Confidence 34443 4788999999999876423 3445666777666777787788889999988 4454432222345688888899
Q ss_pred hcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 384 ARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 384 ~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
++.+..+. +...++.++...+..|++. ..+||+|.+|..
T Consensus 477 lr~iP~l~V~~Pad~~E~~~~l~~A~~~----~~~Pv~i~~~r~ 516 (651)
T 2e6k_A 477 LRAMPNLFVIRPADAYETFYAWLVALRR----KEGPTALVLTRQ 516 (651)
T ss_dssp HHTSTTCEEECCSSHHHHHHHHHHHHHC----CSSCEEEECCSS
T ss_pred hcCCCCcEEEecCCHHHHHHHHHHHHHc----CCCCEEEEEeCC
Confidence 99886654 4556777777777777653 258999999853
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-09 Score=129.77 Aligned_cols=112 Identities=12% Similarity=-0.166 Sum_probs=76.2
Q ss_pred EccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeec-CCCccCCCCCCCCCccChhhhhccc
Q psy14416 309 GMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIG-GSCAQDHEGIGGFQECPQVELARPY 387 (1065)
Q Consensus 309 ~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvIt-g~~p~~~~g~ga~Q~idQ~~l~~~~ 387 (1065)
.-.-|++++-+|.|+|...|...++ .|..+=+.-+...|..+-..+.|++++. .+.-.--.+-..+|.+.+..+++.+
T Consensus 387 ~GIaE~~~v~~a~GlA~~gG~~P~~-~~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~i 465 (632)
T 3l84_A 387 FGIREHAMAAINNAFARYGIFLPFS-ATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAM 465 (632)
T ss_dssp CCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHS
T ss_pred eCccHHHHHHHHHHHHHcCCCEEEE-EecHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcC
Confidence 3457889999999999874543333 3355555556667766677899999874 4443221223356888889999998
Q ss_pred ccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 388 CKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 388 ~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
..... ...++.++...++.|++ .+|||+|-+|..
T Consensus 466 P~l~V~~P~d~~e~~~~l~~A~~-----~~~Pv~ir~~r~ 500 (632)
T 3l84_A 466 PNFLTFRPADGVENVKAWQIALN-----ADIPSAFVLSRQ 500 (632)
T ss_dssp SSCEEECCSSHHHHHHHHHHHHH-----CSSCEEEECCSS
T ss_pred CCCEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEcCC
Confidence 87644 45566777777777665 359999999854
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-08 Score=123.13 Aligned_cols=112 Identities=13% Similarity=-0.110 Sum_probs=78.5
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccccccccCcceEeecC-CCccCCCCCCCCCccChhhhhcccc
Q psy14416 310 MRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG-SCAQDHEGIGGFQECPQVELARPYC 388 (1065)
Q Consensus 310 ~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg-~~p~~~~g~ga~Q~idQ~~l~~~~~ 388 (1065)
-..|++++-+|.|+|...|...++ .|..+-+.-+..++..+-..+.|++++.. +...--.+-..+|.+.+..+++.+.
T Consensus 408 GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP 486 (669)
T 2r8o_A 408 GVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTP 486 (669)
T ss_dssp CSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTST
T ss_pred chhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCC
Confidence 447889999999999875543333 67777777778888888889999999853 3332111223568888889998886
Q ss_pred cEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 389 KYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 389 k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
... +...++.++...++.|++ ...+||+|-+|..
T Consensus 487 ~l~V~~Pad~~E~~~~l~~a~~----~~~~Pv~i~~~r~ 521 (669)
T 2r8o_A 487 NMSTWRPCDQVESAVAWKYGVE----RQDGPTALILSRQ 521 (669)
T ss_dssp TCEEECCSSHHHHHHHHHHHHH----CSSSCEEEECCSS
T ss_pred CCEEEecCCHHHHHHHHHHHHH----hCCCcEEEEeCCC
Confidence 654 445666666666666664 3358999998853
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=115.55 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=60.0
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc-HHH-HHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GME-LETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~-~~e-L~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
..|++|.++|.|+|+++|.+...++++||+++|||+|++. .+| |.++.++++|+++||.||+ | |+.
T Consensus 142 ~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~--gi~ 209 (367)
T 1umd_A 142 VASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-Y--AIS 209 (367)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-E--ETT
T ss_pred CCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-e--eec
Confidence 4688999999999999998888999999999999999999 899 9999999999888888887 7 553
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.7e-09 Score=120.90 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=88.6
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch-
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE- 943 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~- 943 (1065)
+.+|.+++.++ |+++|..... +++.|+ +++|||+| ++..
T Consensus 142 g~lG~~lp~Av--G~A~A~~~~~----~~~~vv---------------------------------~i~GDGa~-~~G~~ 181 (368)
T 1w85_A 142 IIIGAQYIQAA--GVALGLKMRG----KKAVAI---------------------------------TYTGDGGT-SQGDF 181 (368)
T ss_dssp CSTTHHHHHHH--HHHHHHHHTT----CSCCEE---------------------------------EEEETGGG-GSHHH
T ss_pred cccCccccHHH--HHHHHhHhhC----CCCeEE---------------------------------EEEchhhh-hhcHH
Confidence 45577777776 8888764333 577888 99999999 5532
Q ss_pred -hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC--C
Q psy14416 944 -TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT--T 1020 (1065)
Q Consensus 944 -~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 1020 (1065)
.++.++ .++++|+++||.|| + |+..... .......||.++|++||+.+++|+ +
T Consensus 182 ~Eal~~A-----~~~~lpvi~vv~NN-~-~gi~~~~-----------------~~~~~~~d~~~~a~a~G~~~~~VdG~D 237 (368)
T 1w85_A 182 YEGINFA-----GAFKAPAIFVVQNN-R-FAISTPV-----------------EKQTVAKTLAQKAVAAGIPGIQVDGMD 237 (368)
T ss_dssp HHHHHHH-----HHTTCCEEEEEEEC-S-EETTEEG-----------------GGTCSCSCSGGGGGGTTCCEEEEETTC
T ss_pred HHHHHHH-----HHHCcCEEEEEEcC-C-ccceecc-----------------ccccCCCCHHHHHHHCCCCEEEEcCCC
Confidence 257777 88999988888887 5 3321100 011234689999999999999998 6
Q ss_pred HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1021 VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1021 ~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
++++.++++++++ ..++|+|||+.+.+
T Consensus 238 ~~av~~a~~~A~~~~r~~~gP~lIe~~t~r 267 (368)
T 1w85_A 238 PLAVYAAVKAARERAINGEGPTLIETLCFR 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 9999999999986 24799999999976
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-08 Score=116.35 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=59.1
Q ss_pred ccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeeccc
Q psy14416 175 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFD 244 (1065)
Q Consensus 175 ~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~ 244 (1065)
+..|+||+++|.|+|+++|.+...++++|||++|||+|++. .++|.++.++++|+++||.||+ | ++.
T Consensus 139 ~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~--gi~ 207 (368)
T 1w85_A 139 PPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-F--AIS 207 (368)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-E--ETT
T ss_pred CCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-c--cce
Confidence 35699999999999999998777889999999999999986 4679999999999999999984 6 553
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=6.8e-09 Score=120.06 Aligned_cols=121 Identities=14% Similarity=-0.004 Sum_probs=86.3
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc--
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-- 942 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-- 942 (1065)
+++|.+++.++ |+++|..... +++.|+ ++.|||++ ++.
T Consensus 181 g~lG~~lp~Av--GaA~A~k~~~----~~~~vv---------------------------------~i~GDGa~-~~G~~ 220 (407)
T 1qs0_A 181 GNLATQFVQAV--GWAMASAIKG----DTKIAS---------------------------------AWIGDGAT-AESDF 220 (407)
T ss_dssp SSSSHHHHHHH--HHHHHHHHTT----CCCCEE---------------------------------EEEETGGG-GSHHH
T ss_pred cccccchhHHH--HHHHHHHHhC----CCCEEE---------------------------------EEECCchh-hcChH
Confidence 55677777776 8887764333 677888 99999999 654
Q ss_pred hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC--C
Q psy14416 943 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT--T 1020 (1065)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 1020 (1065)
..++.++ .++++|+++|| |||+ |+..... . .......||.+.|++||+.+++|+ +
T Consensus 221 ~Eal~~A-----~~~~lpvi~Vv-~NN~-~gi~~~~-----------~-----~~~~~~~d~a~~a~a~G~~~~~VdG~D 277 (407)
T 1qs0_A 221 HTALTFA-----HVYRAPVILNV-VNNQ-WAISTFQ-----------A-----IAGGESTTFAGRGVGCGIASLRVDGND 277 (407)
T ss_dssp HHHHHHH-----HHHTCCEEEEE-EECS-EETTEEG-----------G-----GGTTTTCCSTHHHHHTTCEEEEEETTC
T ss_pred HHHHHHH-----HHHCcCEEEEE-ECCC-cceeecc-----------c-----cccCCCCCHHHHHHHcCCeEEEEcCCC
Confidence 3467777 78999955555 5556 3321100 0 111135689999999999999998 5
Q ss_pred HHHHHHHHHHHHh---cCCCCEEEEEEeCCC
Q psy14416 1021 VPQIKQAMKKCLQ---TTTRPSLINILINPS 1048 (1065)
Q Consensus 1021 ~~~l~~~~~~~~~---~~~~~~li~~~~~~~ 1048 (1065)
++++.++++++++ ..++|+|||+.+.+.
T Consensus 278 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 308 (407)
T 1qs0_A 278 FVAVYAASRWAAERARRGLGPSLIEWVTYRA 308 (407)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeecc
Confidence 7799999988875 248999999999764
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-08 Score=115.07 Aligned_cols=84 Identities=23% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
|+.+|.|+.. ....++. ..|+||+++|.|+|+++|.+...++++|||++|||++++. .++|.++++|++|+++||
T Consensus 162 G~g~~~h~~~-~~~~~~~--~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv 238 (407)
T 1qs0_A 162 GRQLPIMYSV-REAGFFT--ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNV 238 (407)
T ss_dssp TCSCTTCCCB-GGGTBCC--CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceeecch-hccCccc--cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEE
Confidence 5667777644 1222322 3689999999999999998877899999999999999986 588999999999976666
Q ss_pred EcCCeeeecccc
Q psy14416 234 VNNNGIYGGFDE 245 (1065)
Q Consensus 234 ~NN~gy~~g~~~ 245 (1065)
.|| +| ++..
T Consensus 239 ~NN-~~--gi~~ 247 (407)
T 1qs0_A 239 VNN-QW--AIST 247 (407)
T ss_dssp EEC-SE--ETTE
T ss_pred ECC-Cc--ceee
Confidence 666 56 5543
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.7e-09 Score=127.08 Aligned_cols=135 Identities=11% Similarity=0.028 Sum_probs=97.6
Q ss_pred ecceEEEEeccccccccccchhhhhheeccccc---cccccEEEEEccCcccCCccccccceeccccceeeeccceEEEE
Q psy14416 856 VLPVILVIVNNNGIYGGFDETTYASIVESGEVT---TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIV 932 (1065)
Q Consensus 856 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1065)
..|-+....|++|.+++.++ |++++...... ....++.|+ ++
T Consensus 105 ~~~g~~~~tG~lG~gl~~Av--G~AlA~~~~~~~~n~~~~d~~v~---------------------------------~v 149 (632)
T 3l84_A 105 STLGVEIATGPLGQGVANAV--GFAMAAKKAQNLLGSDLIDHKIY---------------------------------CL 149 (632)
T ss_dssp TSTTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCTTTCCCCEE---------------------------------EE
T ss_pred CCCCcccCCcchhhHHHHHH--HHHHHHHhhccccccCCCCCeEE---------------------------------EE
Confidence 33444455577788777777 88887732110 001267888 99
Q ss_pred eccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 933 NNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 933 ~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+|||++ + +...++.++ .++++|.+|+|+|||++ +. ... +.. ....|+.+++++
T Consensus 150 ~GDG~~-~eG~~~Eal~~A-----~~~~L~~livi~nnN~~-~i-~~~----------~~~-------~~~~d~~~~~~a 204 (632)
T 3l84_A 150 CGDGDL-QEGISYEACSLA-----GLHKLDNFILIYDSNNI-SI-EGD----------VGL-------AFNENVKMRFEA 204 (632)
T ss_dssp EEHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-ET-TEE----------GGG-------TCCCCHHHHHHH
T ss_pred ECCcch-hhccHHHHHHHH-----HHcCCCcEEEEEECCCc-cc-ccc----------hhh-------hcChhHHHHHHH
Confidence 999999 5 556688888 89999988888888884 11 110 000 124689999999
Q ss_pred cCCCeEeeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1011 FGHDGYLCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1011 ~g~~~~~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
||.+++.|+ +.++|.+||+++.+. ++|+||++.|.+....
T Consensus 205 ~G~~~~~vdGhd~~~l~~al~~A~~~-~~P~lI~v~T~kG~G~ 246 (632)
T 3l84_A 205 QGFEVLSINGHDYEEINKALEQAKKS-TKPCLIIAKTTIAKGA 246 (632)
T ss_dssp TTCEEEEEETTCHHHHHHHHHHHHTC-SSCEEEEEECCTTTTC
T ss_pred cCCeEEEEeeCCHHHHHHHHHHHHhC-CCCEEEEEeeEeeecC
Confidence 999999996 899999999999885 9999999999765443
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.8e-09 Score=126.07 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=96.8
Q ss_pred ceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEE
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 931 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1065)
|-+-...|++|.+++.++ |+++|..... .-.+.++.|+ +
T Consensus 133 pgv~~~tG~lG~gl~~Av--G~AlA~~~~~~~~n~~~~~~~d~~v~---------------------------------~ 177 (690)
T 3m49_A 133 AGVDATTGPLGQGIATAV--GMAMAERHLAAKYNRDAYNIVDHYTY---------------------------------A 177 (690)
T ss_dssp TTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCSCCCEE---------------------------------E
T ss_pred CccccCCccccccHHHHH--HHHHHHHHhhccccccccccCCCeEE---------------------------------E
Confidence 333444567787777776 8888763211 0011267788 9
Q ss_pred EeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 932 VNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 932 ~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++|||++ + +...++.++ .++++|..|+|+|||++ + +.... ......|+.++++
T Consensus 178 i~GDG~l-~eG~~~Eal~~A-----~~~~L~~livI~dnN~~-~-i~~~~-----------------~~~~~~d~~~~~~ 232 (690)
T 3m49_A 178 ICGDGDL-MEGVSAEASSLA-----AHLQLGRLVVLYDSNDI-S-LDGDL-----------------NRSFSESVEDRYK 232 (690)
T ss_dssp EECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSB-C-SSSBG-----------------GGTCCCCHHHHHH
T ss_pred EECchhh-hhccHHHHHHHH-----HHhCCCeEEEEEECCCe-e-cccch-----------------hhccchhHHHHHH
Confidence 9999999 5 455678888 88999988888888884 2 11110 0112468999999
Q ss_pred HcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1010 VFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1010 ~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
+||.++++| ++.++|.+||+++.+..++|+||++.|.+....
T Consensus 233 a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~G~ 277 (690)
T 3m49_A 233 AYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGS 277 (690)
T ss_dssp HHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred HcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEeeccccc
Confidence 999999999 799999999999987348999999999766543
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=98.68 E-value=8.6e-09 Score=119.18 Aligned_cols=119 Identities=14% Similarity=0.032 Sum_probs=89.1
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcch-
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE- 943 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~- 943 (1065)
+.+|.+++.++ |+++|..... +++.|+ +++|||+| ++..
T Consensus 162 g~lG~~lp~Av--G~AlA~~~~~----~~~~vv---------------------------------~~~GDGa~-~~G~~ 201 (400)
T 2bfd_A 162 SPLATQIPQAV--GAAYAAKRAN----ANRVVI---------------------------------CYFGEGAA-SEGDA 201 (400)
T ss_dssp SSTTTHHHHHH--HHHHHHHHHT----CCCCEE---------------------------------EEEETTGG-GSHHH
T ss_pred ccccccccHHH--HHHHhhhhhC----CCCeEE---------------------------------EEECchhh-hcChH
Confidence 55577777766 8888773222 367788 99999999 7776
Q ss_pred -hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC--C
Q psy14416 944 -TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT--T 1020 (1065)
Q Consensus 944 -~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 1020 (1065)
.++.++ .++++|+++||.|| ++ +..... .......|+.+.+++||+.+++|+ +
T Consensus 202 ~Eal~~A-----~~~~lpvi~vv~NN-~~-~i~~~~-----------------~~~~~~~d~~~~a~a~G~~~~~VdG~D 257 (400)
T 2bfd_A 202 HAGFNFA-----ATLECPIIFFCRNN-GY-AISTPT-----------------SEQYRGDGIAARGPGYGIMSIRVDGND 257 (400)
T ss_dssp HHHHHHH-----HHTTCCEEEEEEEC-SE-ETTEEG-----------------GGTCSSSTTGGGTGGGTCEEEEEETTC
T ss_pred HHHHHHH-----HHHCcCEEEEEECC-ce-eeeecc-----------------cccCCCCCHHHHHHHcCCcEEEEeCCC
Confidence 788888 88999999888888 63 211100 001134789999999999999998 6
Q ss_pred HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1021 VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1021 ~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
++++.++++++++ ..++|+|||+.+.+
T Consensus 258 ~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 258 VFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 8899999998886 23899999999944
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8.6e-09 Score=125.67 Aligned_cols=123 Identities=14% Similarity=0.044 Sum_probs=90.6
Q ss_pred EeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC--
Q psy14416 863 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG-- 940 (1065)
Q Consensus 863 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~-- 940 (1065)
..|++|.+++.++ |++++..... .+++.|+ +++|||+| +
T Consensus 119 ~~G~lG~gl~~A~--G~AlA~~~~~---~~~~~vv---------------------------------~v~GDG~~-~eG 159 (616)
T 3mos_A 119 ATGSLGQGLGAAC--GMAYTGKYFD---KASYRVY---------------------------------CLLGDGEL-SEG 159 (616)
T ss_dssp CCCSTTCHHHHHH--HHHHHHHHTS---CCSCCEE---------------------------------EEEETGGG-GSH
T ss_pred cccccCCccHHHH--HHHHHHHHhC---CCCCEEE---------------------------------EEECcccc-ccC
Confidence 4567788777777 8888763111 1257788 99999999 5
Q ss_pred cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC-
Q psy14416 941 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT- 1019 (1065)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 1019 (1065)
+...++.++ .++++|.+|+|+|||++ +. . +.. .......||.+++++||+++++|+
T Consensus 160 ~~~Eal~~A-----~~~~l~~livi~nnN~~-~i-~----------~~~------~~~~~~~~~~~~~~a~G~~~~~VdG 216 (616)
T 3mos_A 160 SVWEAMAFA-----SIYKLDNLVAILDINRL-GQ-S----------DPA------PLQHQMDIYQKRCEAFGWHAIIVDG 216 (616)
T ss_dssp HHHHHHHHH-----HHTTCTTEEEEEEECSB-CS-S----------SBC------TTTTCHHHHHHHHHHTTCEEEEEET
T ss_pred cHHHHHHHH-----HHcCCCcEEEEEECCCC-CC-c----------CCc------ccccChHHHHHHHHHcCCeEEEEcC
Confidence 556688888 88999988888898883 21 1 100 011134689999999999999994
Q ss_pred -CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1020 -TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1020 -~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+.++|.++++++ .++|+||++.|.+...
T Consensus 217 ~d~~~l~~al~~~---~~~P~lI~v~T~kg~G 245 (616)
T 3mos_A 217 HSVEELCKAFGQA---KHQPTAIIAKTFKGRG 245 (616)
T ss_dssp TCHHHHHHHHHSC---CSSCEEEEEECCTTTT
T ss_pred CCHHHHHHHHHhc---CCCCEEEEEEEecccc
Confidence 899999999765 3899999999976543
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.8e-09 Score=126.48 Aligned_cols=136 Identities=14% Similarity=0.014 Sum_probs=99.0
Q ss_pred cceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 857 LPVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 857 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
.|-+....+++|.+++.++ |++++..... ...+.++.|+
T Consensus 106 ~~g~~~~~G~lG~gl~~Av--G~AlA~~~~~~~~n~~~~~~~~~~v~--------------------------------- 150 (669)
T 2r8o_A 106 TAGVETTTGPLGQGIANAV--GMAIAEKTLAAQFNRPGHDIVDHYTY--------------------------------- 150 (669)
T ss_dssp STTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------
T ss_pred CCCcccccccccchHHHHH--HHHHHHHHhccccccCccCCcCCeEE---------------------------------
Confidence 3445566678888888877 8888763110 0011266788
Q ss_pred EEeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ + +...++.++ .++++|.+|+|+|||++ +. ... .. .....|+.+++
T Consensus 151 ~~~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~~nN~~-~i-~~~----------~~-------~~~~~d~~~~~ 205 (669)
T 2r8o_A 151 AFMGDGCM-MEGISHEVCSLA-----GTLKLGKLIAFYDDNGI-SI-DGH----------VE-------GWFTDDTAMRF 205 (669)
T ss_dssp EEECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-ET-TEE----------GG-------GTCCCCHHHHH
T ss_pred EEECHhHh-cchHHHHHHHHH-----HHcCCCcEEEEEECCCc-Ee-ccc----------cc-------cccCccHHHHH
Confidence 99999999 5 455678888 88999988888888883 21 110 00 01135899999
Q ss_pred HHcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1009 AVFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1009 ~~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
++||++++ .|+ +.++|.++++++.+..++|+||++.|.+.....
T Consensus 206 ~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~ 252 (669)
T 2r8o_A 206 EAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSP 252 (669)
T ss_dssp HHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCT
T ss_pred HHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEEEeEeccCcC
Confidence 99999998 887 999999999999874489999999998766554
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-08 Score=126.47 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=96.2
Q ss_pred ceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEE
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 931 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1065)
|-+....+.+|.+++.++ |++++..... ...+.++.|+ +
T Consensus 109 ~g~~~~~G~lG~gl~~Av--G~AlA~~~~~~~~n~~~~~~~~~~vv---------------------------------~ 153 (680)
T 1gpu_A 109 PGVEVTTGPLGQGISNAV--GMAMAQANLAATYNKPGFTLSDNYTY---------------------------------V 153 (680)
T ss_dssp TTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------E
T ss_pred CCeeeccccccchHHHHH--HHHHHHHHhccccccCccCCCCCeEE---------------------------------E
Confidence 444455677788877777 8888763110 0011256788 9
Q ss_pred EeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 932 VNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 932 ~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++|||++ + +...++.++ .+++||.+|+|+|||++ +. ... .. .....|+.++++
T Consensus 154 i~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~~nN~~-~i-~~~----------~~-------~~~~~d~~~~~~ 208 (680)
T 1gpu_A 154 FLGDGCL-QEGISSEASSLA-----GHLKLGNLIAIYDDNKI-TI-DGA----------TS-------ISFDEDVAKRYE 208 (680)
T ss_dssp EECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-ET-TEE----------GG-------GTCCCCHHHHHH
T ss_pred EECCCcc-chhhHHHHHHHH-----HHhCCCcEEEEEECCCc-eE-ecc----------cc-------cccCccHHHHHH
Confidence 9999999 5 555678888 88999988888888884 21 110 00 012468999999
Q ss_pred HcCCCeE-eeC---CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1010 VFGHDGY-LCT---TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1010 ~~g~~~~-~~~---~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+||++++ .|+ +.++|.++++++.+..++|+||++.|.+...
T Consensus 209 a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G 253 (680)
T 1gpu_A 209 AYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 253 (680)
T ss_dssp HHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTTT
T ss_pred hcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEEEeecccc
Confidence 9999999 888 9999999999998744899999999987433
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-08 Score=123.62 Aligned_cols=133 Identities=12% Similarity=0.020 Sum_probs=94.4
Q ss_pred ceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEE
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 931 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1065)
|-+-...|++|.+++.++ |+++|..... ...+.++.|+ +
T Consensus 109 ~gve~~tG~lG~gl~~Av--G~AlA~~~~~~~~~~~~~~~~d~~v~---------------------------------~ 153 (663)
T 3kom_A 109 PGVETTTGPLGQGVANAV--GMALGEKLLSDRYNTPDLKVIDHHTY---------------------------------V 153 (663)
T ss_dssp TTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCSCCCCEE---------------------------------E
T ss_pred CCcccCCcchhhHHHHHH--HHHHhHHhhcccccccccccCCCeEE---------------------------------E
Confidence 333345567787777776 8888763211 0011167888 9
Q ss_pred EeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 932 VNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 932 ~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++|||++ + +...++.++ .+++||..|+|+|||++ + +.. .+.. ....|+.+.++
T Consensus 154 i~GDG~l-~eG~~~Eal~~A-----~~~~L~~livi~dnN~~-~-i~~----------~~~~-------~~~~d~~~~~~ 208 (663)
T 3kom_A 154 FLGDGCL-MEGVSHEACSLA-----GTLGLNKLVAFWDDNNI-S-IDG----------DTKG-------WFSDNTPERFR 208 (663)
T ss_dssp EECHHHH-HSHHHHHHHHHH-----HHHTCTTEEEEEEECC-----------------CGGG-------TCCCCHHHHHH
T ss_pred EECchhh-hhchHHHHHHHH-----HHhCCCeEEEEEECCCc-c-ccc----------chhh-------hcchhHHHHHH
Confidence 9999999 5 455688888 89999988888888884 1 111 1110 12478999999
Q ss_pred HcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1010 VFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1010 ~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+||.+++ .|+ +.++|.+|++++.+..++|+||++.|.+...
T Consensus 209 a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G 252 (663)
T 3kom_A 209 AYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVIGFG 252 (663)
T ss_dssp HTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEECCTTTT
T ss_pred HCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEecccccc
Confidence 9999999 785 8999999999998734899999999976543
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-08 Score=125.42 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=71.2
Q ss_pred EEeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||+| + +...++.++ .++++|.+|+|+|||++ + +... +.. ....|+.+.+
T Consensus 192 ~i~GDG~l-~eG~~~Eal~~A-----~~~~L~~livI~dnN~~-~-i~~~----------~~~-------~~~~d~~~~~ 246 (711)
T 3uk1_A 192 VFLGDGCL-MEGISHEACSLA-----GTLKLNKLIALYDDNGI-S-IDGD----------VVN-------WFHDDTPKRF 246 (711)
T ss_dssp EEECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-E-TTEE----------GGG-------TCCCCHHHHH
T ss_pred EEECCcch-hhccHHHHHHHH-----HHhCCCcEEEEEECCCc-c-cccc----------hhh-------hcCCCHHHHH
Confidence 99999999 5 455688888 99999988888888884 1 1110 000 0247899999
Q ss_pred HHcCCCeEe-e--CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1009 AVFGHDGYL-C--TTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1009 ~~~g~~~~~-~--~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
++||.++++ | ++.++|.++++++.+. ++|+||++.|.+...
T Consensus 247 ~a~G~~~~~~vdG~d~~~l~~Al~~A~~~-~~P~lI~v~T~kG~G 290 (711)
T 3uk1_A 247 EAYGWNVIPNVNGHDVDAIDAAIAKAKRS-DKPSLICCKTRIGNG 290 (711)
T ss_dssp HHTTCEEEEEEETTCHHHHHHHHHHHTTC-SSCEEEEEEC-----
T ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHHhC-CCCEEEEEccccccC
Confidence 999999998 6 5899999999999875 999999999975443
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-08 Score=123.59 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=100.0
Q ss_pred cceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 857 LPVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 857 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
.|-+....+++|.+++.++ |++++..... ....+++.|+
T Consensus 119 ~~~~~~~~G~lG~gl~~Av--G~AlA~~~~~~~~n~~~~~~~~~~v~--------------------------------- 163 (675)
T 1itz_A 119 TPGVEVTTGPLGQGIANAV--GLALAEKHLAARFNKPDSEIVDHYTY--------------------------------- 163 (675)
T ss_dssp CTTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------
T ss_pred CCCeeECCccHHhHHHHHH--HHHHHhhhhcccccccccCCCCCEEE---------------------------------
Confidence 4455566678888888877 8888763111 1112567788
Q ss_pred EEeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ + +...++.++ .+++|+.+|+|+|||++ +. ... ... . ...|+.+++
T Consensus 164 ~i~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~~nN~~-~i-~~~----------~~~-----~--~~~d~~~~~ 218 (675)
T 1itz_A 164 VILGDGCQ-MEGIANEACSLA-----GHWGLGKLIAFYDDNHI-SI-DGD----------TEI-----A--FTEDVSTRF 218 (675)
T ss_dssp EEECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-ET-TEE----------GGG-----T--CCSCHHHHH
T ss_pred EEECHhHh-chhHHHHHHHHH-----HHhCCCcEEEEEECCCc-cC-CCC----------hhh-----h--cChhHHHHH
Confidence 99999999 5 566788888 88999877788888884 11 110 000 1 157899999
Q ss_pred HHcCCCeE-eeC---CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1009 AVFGHDGY-LCT---TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1009 ~~~g~~~~-~~~---~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
++||.+++ .|+ +.++|.++++++.+..++|+||++.|.+.....
T Consensus 219 ~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~~ 266 (675)
T 1itz_A 219 EALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFGSP 266 (675)
T ss_dssp HHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCT
T ss_pred HhCCCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEeeecccCcc
Confidence 99999998 887 999999999999874489999999998865543
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-08 Score=123.72 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=97.0
Q ss_pred ceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEEE
Q psy14416 858 PVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVI 931 (1065)
Q Consensus 858 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1065)
|-+....+++|.+++.++ |++++..... ....+++.|+ +
T Consensus 111 ~g~~~~~G~lG~gl~~Av--G~A~A~~~~~~~~~~~~~~~~~~~v~---------------------------------~ 155 (651)
T 2e6k_A 111 PGVEVTTGPLGQGISTAV--GLALAERKLAAEFNRPGHVVVDHYTY---------------------------------V 155 (651)
T ss_dssp TTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------E
T ss_pred CCeeeccccccchHHHHH--HHHHHHHhhcccccccccCCCCCEEE---------------------------------E
Confidence 445556677888888877 8888763111 1112467788 9
Q ss_pred EeccccccC--cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 932 VNNNGIYGG--FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 932 ~~gd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
++|||++ + +...++.++ .+++||.+|+|+|||++ +. ... ... . ...|+.++++
T Consensus 156 ~~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~~nN~~-~i-~~~----------~~~-----~--~~~d~~~~~~ 210 (651)
T 2e6k_A 156 LASDGDL-MEGVSGEAASLA-----GHWGLSKLIVFWDDNRI-SI-DGP----------TDL-----A--FTEDVLARYR 210 (651)
T ss_dssp EECHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECCE-ET-TEE----------GGG-----T--CCSCHHHHHH
T ss_pred EEChhhh-chhHHHHHHHHH-----HHcCCCeEEEEEECCCc-cc-ccc----------ccc-----c--cCccHHHHHH
Confidence 9999999 5 455678888 88999988888888883 21 110 000 0 1468999999
Q ss_pred HcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1010 VFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1010 ~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
+||++++ +|+ +.++|.++++++.+. ++|+||++.|.+...
T Consensus 211 a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~P~lI~~~t~kg~G 253 (651)
T 2e6k_A 211 AYGWQTLRVEDVNDLEALRKAIKLAKLD-ERPTLIAVRSHIGFG 253 (651)
T ss_dssp HTTCEEEEESCTTCHHHHHHHHHHHHHS-SSCEEEEEECCTTTT
T ss_pred hCCCeEEEEeCCCCHHHHHHHHHHHHHC-CCCEEEEEEeEeccc
Confidence 9999999 887 999999999999884 899999999986544
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=9.2e-08 Score=117.76 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=83.9
Q ss_pred cccCCCcchhHHHHHHhhhcccC-----C-----CCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA-----P-----GKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~-----p-----~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|+++|..... | +++|+|++|||+++ |+.++|.++.++++|.+++|+||++| ++
T Consensus 153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~--~i 230 (711)
T 3uk1_A 153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGI--SI 230 (711)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE--ET
T ss_pred CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCc--cc
Confidence 46899999999999999965322 1 79999999999999 67899999999999988888888877 44
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+.+.-. . + . .-+.+..+..|++.+--+-|.....+..+ .--
T Consensus 231 ~~~~~~---~---~--------~----~d~~~~~~a~G~~~~~~vdG~d~~~l~~A---------------------l~~ 271 (711)
T 3uk1_A 231 DGDVVN---W---F--------H----DDTPKRFEAYGWNVIPNVNGHDVDAIDAA---------------------IAK 271 (711)
T ss_dssp TEEGGG---T---C--------C----CCHHHHHHHTTCEEEEEEETTCHHHHHHH---------------------HHH
T ss_pred ccchhh---h---c--------C----CCHHHHHHHcCCcEEEEeCCCCHHHHHHH---------------------HHH
Confidence 431111 1 0 0 11344556667765544556555444433 333
Q ss_pred HHHhCCCeEEEEe
Q psy14416 324 GYLTKKPGVCLVV 336 (1065)
Q Consensus 324 ar~tgkpgv~~~t 336 (1065)
++..++|.++.|.
T Consensus 272 A~~~~~P~lI~v~ 284 (711)
T 3uk1_A 272 AKRSDKPSLICCK 284 (711)
T ss_dssp HTTCSSCEEEEEE
T ss_pred HHhCCCCEEEEEc
Confidence 4557888888774
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=116.57 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=81.6
Q ss_pred cccCCCcchhHHHHHHhhhcccC-----C-----CCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA-----P-----GKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~-----p-----~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|+++|..... | +++|+|++|||+++ |+.++|.++.+++||.+++|+||++| ++
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~--~i 191 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNI--SI 191 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCc--cc
Confidence 46999999999999999965332 2 79999999999999 67899999999999998999999877 44
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+.+ .+.. + . .-+.+..+..|.+.+.-+-|.....+. .|.-.
T Consensus 192 ~~~---~~~~---~--------~----~d~~~~~~a~G~~~~~~vdG~d~~~l~---------------------~al~~ 232 (663)
T 3kom_A 192 DGD---TKGW---F--------S----DNTPERFRAYGWHVIENVDGHDFVAIE---------------------KAINE 232 (663)
T ss_dssp --C---GGGT---C--------C----CCHHHHHHHTTCEEEEEEETTCHHHHH---------------------HHHHH
T ss_pred ccc---hhhh---c--------c----hhHHHHHHHCCCeEEEEEcCCCHHHHH---------------------HHHHH
Confidence 431 1111 0 0 113445556666665445555444443 33444
Q ss_pred HHH-hCCCeEEEEe
Q psy14416 324 GYL-TKKPGVCLVV 336 (1065)
Q Consensus 324 ar~-tgkpgv~~~t 336 (1065)
++. +++|.++.|.
T Consensus 233 A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 233 AHSQQQKPTLICCK 246 (663)
T ss_dssp HHHCSSSCEEEEEE
T ss_pred HHhcCCCCEEEEEe
Confidence 565 6889988875
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.9e-08 Score=117.70 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=86.7
Q ss_pred eccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC--c
Q psy14416 864 VNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG--F 941 (1065)
Q Consensus 864 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~--~ 941 (1065)
.+.+|.+++.|+ |+++|..... +++.|+ +++|||+| + +
T Consensus 120 ~G~~G~gl~~A~--G~AlA~~~~~----~~~~Vv---------------------------------~v~GDG~~-~~G~ 159 (621)
T 2o1s_A 120 VGHSSTSISAGI--GIAVAAEKEG----KNRRTV---------------------------------CVIGDGAI-TAGM 159 (621)
T ss_dssp CSSSSCHHHHHH--HHHHHHHHHT----SCCCEE---------------------------------EEEETTGG-GSHH
T ss_pred CcccchHHHHHH--HHHHHHHHhC----CCCeEE---------------------------------EEEchhhh-hccH
Confidence 466688777777 8888764333 678899 99999999 5 4
Q ss_pred chhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhh----H-hHHhhcCCc-------ccCC---CC-CCC-CCCccH
Q psy14416 942 DETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEAT----Y-ASIVESGEV-------TTVS---PP-TSL-GPSLRY 1004 (1065)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~----~-~~~~~~~~~-------~~~~---~~-~~~-~~~~~~ 1004 (1065)
...++.++ .++++|+++| +|||+ |+...... + .++.....+ .... |. ... ....||
T Consensus 160 ~~EaL~~A-----~~~~~pli~v-vnnN~-~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~ 232 (621)
T 2o1s_A 160 AFEAMNHA-----GDIRPDMLVI-LNDNE-MSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEH 232 (621)
T ss_dssp HHHHHHHH-----HHHCCSEEEE-EEECC---------------------------------------------------
T ss_pred HHHHHHHH-----HhhCCCEEEE-EeCCC-cccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 45678888 8899999755 56666 22111100 0 000000000 0000 00 000 001133
Q ss_pred -------HHHHHHcCCCeE-ee--CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1005 -------EKMMAVFGHDGY-LC--TTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1005 -------~~~~~~~g~~~~-~~--~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
.+++++||++++ .+ ++.++|.++++++.+. ++|+|||+.|.+....
T Consensus 233 ~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~-~gP~lI~v~t~kg~G~ 288 (621)
T 2o1s_A 233 IKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDL-KGPQFLHIMTKKGRGY 288 (621)
T ss_dssp ------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHS-CSEEEEEEECCCTTCC
T ss_pred hhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHc-CCCEEEEEEEecccCC
Confidence 689999999998 77 5999999999999886 8999999999875444
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-07 Score=116.51 Aligned_cols=120 Identities=20% Similarity=0.204 Sum_probs=85.2
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|+++|..... .+++|+|++|||+++ |+.++|.++.++++|.+++|+||++| ++
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~--~i 215 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI--SL 215 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB--CS
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCe--ec
Confidence 35899999999999999965432 289999999999999 67899999999999999999999877 55
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+.+. +.. + . .-+.+..+..|.+.+-..-|.....+.. |.-.
T Consensus 216 ~~~~---~~~---~--------~----~d~~~~~~a~G~~~~~v~DG~d~~~l~~---------------------Al~~ 256 (690)
T 3m49_A 216 DGDL---NRS---F--------S----ESVEDRYKAYGWQVIRVEDGNDIEAIAK---------------------AIEE 256 (690)
T ss_dssp SSBG---GGT---C--------C----CCHHHHHHHHTCEEEEESCTTCHHHHHH---------------------HHHH
T ss_pred ccch---hhc---c--------c----hhHHHHHHHcCCcEEEEecCCCHHHHHH---------------------HHHH
Confidence 4411 110 0 0 1134555566776554436665544443 3445
Q ss_pred HHH-hCCCeEEEEe
Q psy14416 324 GYL-TKKPGVCLVV 336 (1065)
Q Consensus 324 ar~-tgkpgv~~~t 336 (1065)
++. +++|.++.|.
T Consensus 257 a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 257 AKADEKRPTLIEVR 270 (690)
T ss_dssp HHHCCSSCEEEEEE
T ss_pred HHhcCCCCEEEEEE
Confidence 566 7889988875
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-08 Score=120.57 Aligned_cols=142 Identities=10% Similarity=0.087 Sum_probs=89.3
Q ss_pred EeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccC--
Q psy14416 863 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGG-- 940 (1065)
Q Consensus 863 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~-- 940 (1065)
..+.+|.+++.|+ |+++|..... +++.|+ +++|||+| +
T Consensus 121 ~~G~~G~gl~~Av--G~AlA~k~~~----~~~~Vv---------------------------------~v~GDG~~-~~G 160 (629)
T 2o1x_A 121 TVGHASTSLTNAL--GMALARDAQG----KDFHVA---------------------------------AVIGDGSL-TGG 160 (629)
T ss_dssp CCSSSSCHHHHHH--HHHHHHHHHT----CCCCEE---------------------------------EEEETTGG-GSH
T ss_pred CCCcccccHhHHH--HHHHHHHHhC----CCCeEE---------------------------------EEEchhhh-hcc
Confidence 3466688888777 8888754333 788899 99999999 5
Q ss_pred cchhhHHHhhccCccccCCCEEEEEEcCCcccCCCch-h---hH-hHHhhcCCccc-------C-----CCCCCCC-CCc
Q psy14416 941 FDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDE-A---TY-ASIVESGEVTT-------V-----SPPTSLG-PSL 1002 (1065)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~-~---~~-~~~~~~~~~~~-------~-----~~~~~~~-~~~ 1002 (1065)
+...++.++ .++++|+++| +|||+ |+.... . .+ ..+.....+.. . .+..... ...
T Consensus 161 ~~~EaL~~A-----~~~~~pli~I-vnnN~-~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (629)
T 2o1x_A 161 MALAALNTI-----GDMGRKMLIV-LNDNE-MSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAK 233 (629)
T ss_dssp HHHHHHHHH-----HHHCCSEEEE-EEECS-BSSSBCCSSHHHHC-----------------------------------
T ss_pred HHHHHHHHH-----HhhCCCEEEE-EECCC-CCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 556789998 8899998655 56666 221110 0 11 11000000000 0 0000000 001
Q ss_pred cH-------H--HHHHHcCCCeE-eeC--CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1003 RY-------E--KMMAVFGHDGY-LCT--TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1003 ~~-------~--~~~~~~g~~~~-~~~--~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
|| . +++++||++++ +++ +.++|.++++++.+. ++|+||++.+.+....+
T Consensus 234 d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~-~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 234 NSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL-DGPTILHIVTTKGKGLS 294 (629)
T ss_dssp ----------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS-SSEEEEEEECCTTTTCH
T ss_pred HHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc-CCCEEEEEEEecCCCCC
Confidence 33 3 78999999998 775 999999999999876 89999999998765543
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-07 Score=116.42 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=85.8
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|++++..... ++++|+|++|||+++ |+.++|.++.+++|+.+++|+||++| ++
T Consensus 125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~--~i 202 (675)
T 1itz_A 125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHI--SI 202 (675)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE--ET
T ss_pred CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCc--cC
Confidence 46899999999999999965433 789999999999999 88999999999999988888998877 44
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCC-chhhhHHHhhcCCceEEEccCCchHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGI-PVIELAMACQQEGIHYIGMRNEQAACYAAQA 322 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~-~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g 322 (1065)
+.+.-. . . . .-+.+..+..|.+.+.-+-|. ....+..+ .-
T Consensus 203 ~~~~~~------~-------~-~----~d~~~~~~a~G~~~~~~vdG~~d~~~l~~a---------------------l~ 243 (675)
T 1itz_A 203 DGDTEI------A-------F-T----EDVSTRFEALGWHTIWVKNGNTGYDDIRAA---------------------IK 243 (675)
T ss_dssp TEEGGG------T-------C-C----SCHHHHHHHTTCEEEEESCTTTCHHHHHHH---------------------HH
T ss_pred CCChhh------h-------c-C----hhHHHHHHhCCCEEEEEecCCCCHHHHHHH---------------------HH
Confidence 331111 0 0 0 113455556777766555555 44444433 33
Q ss_pred HHHH-hCCCeEEEEec
Q psy14416 323 IGYL-TKKPGVCLVVS 337 (1065)
Q Consensus 323 ~ar~-tgkpgv~~~ts 337 (1065)
-++. +++|.++.+..
T Consensus 244 ~a~~~~~~P~lI~~~T 259 (675)
T 1itz_A 244 EAKAVTDKPTLIKVTT 259 (675)
T ss_dssp HHHHCCSSCEEEEEEC
T ss_pred HHHHCCCCeEEEEEee
Confidence 3454 68899888754
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=8.6e-08 Score=118.02 Aligned_cols=135 Identities=14% Similarity=0.077 Sum_probs=96.9
Q ss_pred cceEEEEeccccccccccchhhhhheecccc------ccccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 857 LPVILVIVNNNGIYGGFDETTYASIVESGEV------TTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 857 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
.|-+....+++|.+++.++ |++++..... ...+.++.|+
T Consensus 108 ~pgv~~~tG~lG~gl~~Av--G~AlA~~~~~~~~n~~g~~~~d~~v~--------------------------------- 152 (673)
T 1r9j_A 108 TPGVEVTTGPLGQGIANAV--GLAIAEAHLAATFNRPGYNIVDHYTY--------------------------------- 152 (673)
T ss_dssp STTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------------
T ss_pred CCCeeeccCCCCCcHHHHH--HHHHHHHHhhhhccccccCCCCCEEE---------------------------------
Confidence 4555566678888877777 8887763111 1112366788
Q ss_pred EEeccccccCcc--hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFD--ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ +.. ..++.++ .+++||.+|+|+|||++ + +... ... . ...|+.+.+
T Consensus 153 ~~~GDG~~-~eG~~~Eal~~A-----~~~~L~~li~i~d~N~~-~-i~~~----------~~~-----~--~~~d~~~~~ 207 (673)
T 1r9j_A 153 VYCGDGCL-MEGVCQEALSLA-----GHLALEKLIVIYDSNYI-S-IDGS----------TSL-----S--FTEQCHQKY 207 (673)
T ss_dssp EEECHHHH-HSHHHHHHHHHH-----HHHTCTTEEEEEEECSB-C-SSSB----------GGG-----T--CCCCHHHHH
T ss_pred EEECcchh-cccHHHHHHHHH-----HHhCCCcEEEEEECCCC-c-cccc----------hhh-----c--cCHhHHHHH
Confidence 99999999 532 4457777 88999977788888884 2 1111 000 0 146899999
Q ss_pred HHcCCCeE-ee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q psy14416 1009 AVFGHDGY-LC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADR 1051 (1065)
Q Consensus 1009 ~~~g~~~~-~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 1051 (1065)
++||.+++ .| ++.++|.+|++++.+..++|+||++.|.+....
T Consensus 208 ~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~~T~kg~G~ 254 (673)
T 1r9j_A 208 VAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFGS 254 (673)
T ss_dssp HHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTS
T ss_pred HHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEEeccccccc
Confidence 99999999 88 899999999999987458999999999775443
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.6e-08 Score=124.62 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCeEEEEeCCC-CccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 200 GKRVVCVQGDS-AFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 200 ~rrvV~l~GDG-sf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
+|+||+++||| +|+|++|||.|++++++|+++||+||+.| ||++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~~eL~ta~~~~~~v~iiVlnN~~y--g~tg 997 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVFVMDTEVY--SNTG 997 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTHHHHHHHHHTTCSCEEEEEECSSB--TTTT
T ss_pred CCcEEEEeCcHHHHHcchHHHHHHHHhCCCeEEEEEECHHH--HhHH
Confidence 58999999999 99999999999999999999999999966 8876
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-07 Score=106.61 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=80.7
Q ss_pred ccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcc--
Q psy14416 865 NNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFD-- 942 (1065)
Q Consensus 865 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~-- 942 (1065)
+++|.+++.++ |+++|..... +++.|| ++.|||++ ++.
T Consensus 140 g~~G~~lp~A~--G~A~A~~~~~----~~~~vv---------------------------------~~~GDGa~-~~G~~ 179 (365)
T 2ozl_A 140 GIVGAQVPLGA--GIALACKYNG----KDEVCL---------------------------------TLYGDGAA-NQGQI 179 (365)
T ss_dssp CSTTTHHHHHH--HHHHHHHHHT----CCCCEE---------------------------------EEEETTGG-GCHHH
T ss_pred chhhhhhHHHH--HHHHHHHhcC----CCceEE---------------------------------EEECchhh-hccHH
Confidence 44577666666 8888774332 467788 99999999 553
Q ss_pred hhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeC--C
Q psy14416 943 ETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCT--T 1020 (1065)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 1020 (1065)
..++.++ ..+++|+++||.|| + |+...... .. ..+.||.+ ++||+.+++|+ +
T Consensus 180 ~Ealn~A-----~~~~lpvi~vv~NN-~-~g~~t~~~-~~----------------~~~~~~~~--ra~g~p~~~VdG~D 233 (365)
T 2ozl_A 180 FEAYNMA-----ALWKLPCIFICENN-R-YGMGTSVE-RA----------------AASTDYYK--RGDFIPGLRVDGMD 233 (365)
T ss_dssp HHHHHHH-----HHTTCCEEEEEEEC-S-EETTEEHH-HH----------------CSCCCGGG--TTTTSCEEEEETTC
T ss_pred HHHHHHH-----HHHCcCEEEEEECC-C-cccCCCcc-cc----------------cCCCCHHH--HhCCCCEEEEeCCC
Confidence 2356677 77999988777666 5 33211110 00 01234554 68999999998 7
Q ss_pred HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1021 VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1021 ~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
++++.++++++++ ..++|+|||+.+.+
T Consensus 234 ~~av~~a~~~A~~~~r~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 234 ILCVREATRFAAAYCRSGKGPILMELQTYR 263 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 9999999988874 34899999999954
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-07 Score=113.98 Aligned_cols=121 Identities=22% Similarity=0.268 Sum_probs=85.7
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||+++|.|+|++++..... .+++|+|++|||+++ |+.++|.++.++++|.+++|+||++| ++
T Consensus 114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~--~i 191 (680)
T 1gpu_A 114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI--TI 191 (680)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE--ET
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCc--eE
Confidence 46899999999999999965332 388999999999999 88899999999999988888888877 44
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCC-chhhhHHHhhcCCceEEEccCCchHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGI-PVIELAMACQQEGIHYIGMRNEQAACYAAQA 322 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~-~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g 322 (1065)
+.+.- . .. . .-+++..+..|++.+.-+-|. ....+..++ -
T Consensus 192 ~~~~~---~-----~~------~----~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al---------------------~ 232 (680)
T 1gpu_A 192 DGATS---I-----SF------D----EDVAKRYEAYGWEVLYVENGNEDLAGIAKAI---------------------A 232 (680)
T ss_dssp TEEGG---G-----TC------C----CCHHHHHHHHTCEEEEESCTTTCHHHHHHHH---------------------H
T ss_pred ecccc---c-----cc------C----ccHHHHHHhcCCeEEEEecCCCCHHHHHHHH---------------------H
Confidence 33110 0 00 0 123455566777766556665 555554433 3
Q ss_pred HHHH-hCCCeEEEEec
Q psy14416 323 IGYL-TKKPGVCLVVS 337 (1065)
Q Consensus 323 ~ar~-tgkpgv~~~ts 337 (1065)
-++. +++|.++.+..
T Consensus 233 ~A~~~~~~P~lI~~~T 248 (680)
T 1gpu_A 233 QAKLSKDKPTLIKMTT 248 (680)
T ss_dssp HHHHCTTSCEEEEEEC
T ss_pred HHHHCCCCCEEEEEEe
Confidence 3444 67899888754
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=3.9e-07 Score=112.20 Aligned_cols=121 Identities=21% Similarity=0.157 Sum_probs=85.9
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
..|+||++++.|+|++++..... .+++|+|++|||++++. .+++.++.+++||.+++|+||++| ++
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~--~i 191 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI--SI 191 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB--CS
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC--cc
Confidence 46999999999999999965432 58999999999999954 788999999999988888888877 54
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecC-CchhhhHHHhhcCCceEEEccCCchHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVG-IPVIELAMACQQEGIHYIGMRNEQAACYAAQA 322 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG-~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g 322 (1065)
+.+.-. . + .+-+.+..+..|.+.+.-+-| .....+..++ -
T Consensus 192 ~~~~~~---~---~------------~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al---------------------~ 232 (673)
T 1r9j_A 192 DGSTSL---S---F------------TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKAL---------------------A 232 (673)
T ss_dssp SSBGGG---T---C------------CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHH---------------------H
T ss_pred ccchhh---c---c------------CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHH---------------------H
Confidence 431110 0 0 012456667778777656666 5554444333 3
Q ss_pred HHHH-hCCCeEEEEec
Q psy14416 323 IGYL-TKKPGVCLVVS 337 (1065)
Q Consensus 323 ~ar~-tgkpgv~~~ts 337 (1065)
-++. +++|.++.+..
T Consensus 233 ~A~~~~~~P~lI~~~T 248 (673)
T 1r9j_A 233 EAKATKGKPKMIVQTT 248 (673)
T ss_dssp HHHHCCSSCEEEEEEC
T ss_pred HHHHcCCCCEEEEEec
Confidence 3343 78899888764
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.5e-07 Score=102.77 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=58.0
Q ss_pred cccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
..|+||+++|.|+|+++|.+...+++.|||++|||++++. .++|.++..+++|+++||.|| +| |+..
T Consensus 138 ~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~--g~~t 206 (365)
T 2ozl_A 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RY--GMGT 206 (365)
T ss_dssp CCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SE--ETTE
T ss_pred CcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-Cc--ccCC
Confidence 4589999999999999998776789999999999999985 568999999999998888777 46 5543
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.6e-06 Score=103.41 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=68.0
Q ss_pred EEeccccccCcch--hhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHH
Q psy14416 931 IVNNNGIYGGFDE--TTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMM 1008 (1065)
Q Consensus 931 ~~~gd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
+++|||++ +-.. -.+..+ .+++||-.|+|+|||++ + +. +... .....|+.+.+
T Consensus 173 ~~~GDG~l-~eG~~~EAl~~A-----~~~~L~nli~i~d~N~~-s-i~----------~~~~-------~~~~~~~~~~~ 227 (700)
T 3rim_A 173 VIASDGDI-EEGVTSEASSLA-----AVQQLGNLIVFYDRNQI-S-IE----------DDTN-------IALCEDTAARY 227 (700)
T ss_dssp EEEEHHHH-HSHHHHHHHHHH-----HHTTCTTEEEEEEECSE-E-TT----------EEGG-------GTCCCCHHHHH
T ss_pred EEECCccc-ccChHHHHHHHH-----HHcCCCcEEEEEECCCc-c-cc----------cchh-------hccchhHHHHH
Confidence 99999999 3221 134455 67899855555666673 1 11 1000 11246899999
Q ss_pred HHcCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1009 AVFGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1009 ~~~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
++||.++..| +++++|.+|++++.+.+++|+||++.|-+...
T Consensus 228 ~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~~T~kG~G 272 (700)
T 3rim_A 228 RAYGWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIALRTVIGYP 272 (700)
T ss_dssp HHHTCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTT
T ss_pred HHcCCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEEEEEeeec
Confidence 9999999999 59999999999998745899999999976543
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.8e-05 Score=97.25 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=82.6
Q ss_pred cccCCCcchhHHHHHHhhhccc-------------CCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeee
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY-------------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIY 240 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~-------------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~ 240 (1065)
..|++|++++.|+|+++|.+.. ..+++|+|++|||+++.. -+.+.++..++||.+|+|+||++|
T Consensus 131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~- 209 (700)
T 3rim_A 131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQI- 209 (700)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE-
T ss_pred cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCc-
Confidence 3689999999999999997653 347899999999999954 578999999999977777777766
Q ss_pred eccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHH
Q psy14416 241 GGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAA 320 (1065)
Q Consensus 241 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A 320 (1065)
.++.+. . .. + .+-+.+..+..|.+.+-..-|.....+.. |
T Consensus 210 -si~~~~-~---~~--~------------~~~~~~~~~a~G~~~~~V~DG~D~~al~~---------------------A 249 (700)
T 3rim_A 210 -SIEDDT-N---IA--L------------CEDTAARYRAYGWHVQEVEGGENVVGIEE---------------------A 249 (700)
T ss_dssp -ETTEEG-G---GT--C------------CCCHHHHHHHHTCEEEEEECTTCHHHHHH---------------------H
T ss_pred -ccccch-h---hc--c------------chhHHHHHHHcCCeEEEECCCCCHHHHHH---------------------H
Confidence 332211 1 00 0 12245566677877664226665555443 3
Q ss_pred HHHHHH-hCCCeEEEEe
Q psy14416 321 QAIGYL-TKKPGVCLVV 336 (1065)
Q Consensus 321 ~g~ar~-tgkpgv~~~t 336 (1065)
..-++. +++|.++.|.
T Consensus 250 l~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 250 IANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHCCSSCEEEEEE
T ss_pred HHHHHHcCCCCEEEEEE
Confidence 344555 6899998875
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=5.6e-05 Score=95.10 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=74.5
Q ss_pred cccCCCcchhHHHHHHhhhcc-------cCCCCeEEEEeCCCCcc--ccHHHHHHhhhcCCCEEEEEEcCCeeeeccccc
Q psy14416 176 TFGTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFG--FSGMELETLVRYRLPVILVIVNNNGIYGGFDEA 246 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~-------~~p~rrvV~l~GDGsf~--m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~ 246 (1065)
.-|+||.+++.|+|++++.+. ..++++|+|++|||+++ |+.+.|..+.+++|+.+++|+||++| .++.
T Consensus 190 ~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~--si~~- 266 (886)
T 2qtc_A 190 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQ--RLDG- 266 (886)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSB--CSSS-
T ss_pred cccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCc--ccCC-
Confidence 358999999999999998764 45789999999999999 67899999999999878888888765 2211
Q ss_pred hhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch
Q psy14416 247 TYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV 293 (1065)
Q Consensus 247 ~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~ 293 (1065)
. ........+.|.+..+..|...+-..-|+..
T Consensus 267 -----------~----v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~ 298 (886)
T 2qtc_A 267 -----------P----VTGNGKIINELEGIFEGAGWNVIKVMWGSRW 298 (886)
T ss_dssp -----------B----SCTTSCHHHHHHHHHHHTTCEEEEECBCTTH
T ss_pred -----------C----ccccccccHHHHHHHHhCCCCEEEEecchhH
Confidence 0 0011234567777788888877766544433
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=6.7e-05 Score=94.19 Aligned_cols=66 Identities=20% Similarity=0.108 Sum_probs=57.0
Q ss_pred ccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCc--cccHHH-HHHhhhcCCC---EEEEEEcCCeee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAF--GFSGME-LETLVRYRLP---VILVIVNNNGIY 240 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf--~m~~~e-L~t~vr~~lp---ivivV~NN~gy~ 240 (1065)
-++||+++|.|+|+++|.+... .+..++|+.|||+| ++..+| |.++..+++| +++||.|| +|
T Consensus 244 ~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN-~~- 321 (868)
T 2yic_A 244 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QI- 321 (868)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC-SC-
T ss_pred CccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC-Cc-
Confidence 4789999999999999987643 56789999999997 788888 9999999999 99999999 56
Q ss_pred ecccc
Q psy14416 241 GGFDE 245 (1065)
Q Consensus 241 ~g~~~ 245 (1065)
|+..
T Consensus 322 -g~st 325 (868)
T 2yic_A 322 -GFTT 325 (868)
T ss_dssp -BTTB
T ss_pred -cccc
Confidence 6654
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=97.41 E-value=6.2e-05 Score=96.82 Aligned_cols=66 Identities=20% Similarity=0.108 Sum_probs=56.6
Q ss_pred ccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCc--cccHHH-HHHhhhcCCC---EEEEEEcCCeee
Q psy14416 177 FGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAF--GFSGME-LETLVRYRLP---VILVIVNNNGIY 240 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf--~m~~~e-L~t~vr~~lp---ivivV~NN~gy~ 240 (1065)
-+++|.++|.|+|+++|.+... .++.++|+.|||+| +...+| |.++..+++| +++||.|| +|
T Consensus 489 ~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN-~~- 566 (1113)
T 2xt6_A 489 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QI- 566 (1113)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-SC-
T ss_pred CccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-Cc-
Confidence 4678999999999999987654 56889999999998 888888 9999999999 99999998 45
Q ss_pred ecccc
Q psy14416 241 GGFDE 245 (1065)
Q Consensus 241 ~g~~~ 245 (1065)
|+..
T Consensus 567 -gist 570 (1113)
T 2xt6_A 567 -GFTT 570 (1113)
T ss_dssp -BTTB
T ss_pred -cccc
Confidence 6654
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=91.87 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=65.9
Q ss_pred EEeccccc-cCcchhh-HHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHH
Q psy14416 931 IVNNNGIY-GGFDETT-YASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYE 1005 (1065)
Q Consensus 931 ~~~gd~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1065)
++.|||+| .+...+| +..+ ..+++| ++.||.|| ++ +.-... ... . ...++.
T Consensus 282 ~~~GDGa~~~eG~v~Ealn~A-----~~~~lp~g~vi~iv~NN-~~-g~st~~-~~~-------------~---s~~~~~ 337 (868)
T 2yic_A 282 MLHGDAAFAGQGVVAETLNLA-----LLRGYRTGGTIHIVVNN-QI-GFTTAP-TDS-------------R---SSEYCT 337 (868)
T ss_dssp EEEEHHHHHHCHHHHHHHTTT-----TCTTTCCSCCEEEEEEC-SC-BTTBCH-HHH-------------C---SSSSTT
T ss_pred EEECCcccccccHHHHHHHHH-----HhcCCCCCCeEEEEEcC-Cc-ccccCc-ccc-------------c---cccCHH
Confidence 99999998 4555555 4444 678898 99999988 52 211111 000 0 113355
Q ss_pred HHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1006 KMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1006 ~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
+.|++||+.+++|+ +++++.++++++++ ..++|+|||+.+-+
T Consensus 338 ~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR 384 (868)
T 2yic_A 338 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 384 (868)
T ss_dssp GGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred HHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 68999999999998 58999999988874 23899999999954
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00059 Score=86.20 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=51.5
Q ss_pred cCCCcchhHHHHHHhhhcccC-----CCCeEEEEeCCCCc--cccHHH-HHHhhhcCCC---EEEEEEcCC
Q psy14416 178 GTMGVGLGFALAAALYCNHYA-----PGKRVVCVQGDSAF--GFSGME-LETLVRYRLP---VILVIVNNN 237 (1065)
Q Consensus 178 gsmG~gl~~AlGaala~~~~~-----p~rrvV~l~GDGsf--~m~~~e-L~t~vr~~lp---ivivV~NN~ 237 (1065)
+.+|.++|.|+|+++|.+... .+..+||++|||+| +....| |..+..+++| +++||.||.
T Consensus 321 shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~ 391 (933)
T 2jgd_A 321 SHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ 391 (933)
T ss_dssp SSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC
T ss_pred cccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 356788999999999977653 56789999999998 777888 9999999999 899888886
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00046 Score=86.84 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1020 TVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
+.++|.+|++++.+..++|+||++.|-+.....
T Consensus 365 D~~~l~~a~~~A~~~~~~PtlI~~~T~KG~G~~ 397 (886)
T 2qtc_A 365 DPKKIYAAFKKAQETKGKATVILAHTIKGYGMG 397 (886)
T ss_dssp CHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCT
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEEeeeeccccc
Confidence 788999999999876469999999997665543
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.001 Score=84.15 Aligned_cols=94 Identities=9% Similarity=0.073 Sum_probs=61.8
Q ss_pred EEeccccc-cCcchhh-HHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHH
Q psy14416 931 IVNNNGIY-GGFDETT-YASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYE 1005 (1065)
Q Consensus 931 ~~~gd~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1065)
++.|||+| .+-...| +-.+ ...++| +++||.||+ + +.-.... . ......++.
T Consensus 353 ~v~GDGa~a~qG~~~Ealn~A-----~~~~lp~gg~I~vv~nN~-~-~ist~~~-------------~---~~~~~~~~~ 409 (933)
T 2jgd_A 353 TIHGDAAVTGQGVVQETLNMS-----KARGYEVGGTVRIVINNQ-V-GFTTSNP-------------L---DARSTPYCT 409 (933)
T ss_dssp EEEEHHHHHHCTHHHHHHHHT-----TSTTTCCSCCEEEEEECC---------------------------------CGG
T ss_pred EEECCcccccCCHHHHHHHHh-----hccCCCCCceEEEEEeCC-c-cccCCCH-------------H---hcccchhHH
Confidence 99999999 5555555 4444 667899 888887774 2 2111000 0 001123466
Q ss_pred HHHHHcCCCeEeeCC--HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1006 KMMAVFGHDGYLCTT--VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1006 ~~~~~~g~~~~~~~~--~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
+.+++||+.+++|+- ++++.++++++.+ ...+|+|||+.+-+
T Consensus 410 ~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 410 DIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR 456 (933)
T ss_dssp GGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 778999999999865 7889888888873 33799999999855
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0015 Score=84.29 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred EEeccccc-cCcchhh-HHHhhccCccccCCC---EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHH
Q psy14416 931 IVNNNGIY-GGFDETT-YASIVESGEVTTVLP---VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYE 1005 (1065)
Q Consensus 931 ~~~gd~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1065)
++.|||+| .+...+| +..+ ...++| ++.||.|| ++ + +....... .+ ..++.
T Consensus 527 ~~~GDGa~~~eG~~~Ealn~A-----~~~~lp~g~vi~iv~NN-~~-g-ist~~~~~-------------~s---~~~~~ 582 (1113)
T 2xt6_A 527 MLHGDAAFAGQGVVAETLNLA-----LLRGYRTGGTIHIVVNN-QI-G-FTTAPTDS-------------RS---SEYCT 582 (1113)
T ss_dssp EEEEHHHHHHCTHHHHHHTTT-----TCTTTCCSCCEEEEEEC-SC-B-TTBCHHHH-------------CS---SSSTT
T ss_pred EEECCcccccccHHHHHHHHH-----hhcCCCCCCeEEEEEeC-Cc-c-cccCcccc-------------cc---ccCHH
Confidence 99999998 4555555 3333 668888 99999988 52 2 11110000 00 12234
Q ss_pred HHHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1006 KMMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1006 ~~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
+.+++||+.+++|+ +++++.++++++++ ..++|+|||+.+-+
T Consensus 583 ~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR 629 (1113)
T 2xt6_A 583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 629 (1113)
T ss_dssp GGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred HHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEc
Confidence 67899999999999 99999999988875 23799999999954
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.16 Score=63.19 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=65.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc----HHHHHH-hhhcCCCEEEEEEcCCeeeeccccchhhhh
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS----GMELET-LVRYRLPVILVIVNNNGIYGGFDEATYAWL 251 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~----~~eL~t-~vr~~lpivivV~NN~gy~~g~~~~~~~~~ 251 (1065)
-|++|+|++.|+|+++. +|+.+|+|++|||...=. ..|+.. +..+++..++.|+++++| ..+
T Consensus 174 tG~LGqGls~AvG~A~~----~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~--~i~------- 240 (845)
T 3ahc_A 174 GGELGYALSHAYGAVMN----NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGY--KIA------- 240 (845)
T ss_dssp CSSTTCHHHHHHHHHTT----CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSB--SSS-------
T ss_pred CCCccchHhHHhhhhhc----CCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCC--cCC-------
Confidence 58999999999999987 799999999999994331 111222 335667777788877655 111
Q ss_pred hhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecC-C--chhhhH
Q psy14416 252 DIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVG-I--PVIELA 297 (1065)
Q Consensus 252 ~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG-~--~~~~l~ 297 (1065)
+. ........+-+.+.++..|-+.+.-+-| . ....+.
T Consensus 241 ------g~---t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~ 280 (845)
T 3ahc_A 241 ------NP---TILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIH 280 (845)
T ss_dssp ------SB---CHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHH
T ss_pred ------CC---ccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHH
Confidence 10 0001112567899999999998745678 5 444443
|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.1 Score=57.08 Aligned_cols=87 Identities=23% Similarity=0.261 Sum_probs=60.4
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh-cc-cccccceEEEcCHHHHHHHHHHhhcccccCCC
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWS 630 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~-~~-~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~ 630 (1065)
...+.+||++|++|+++.-....+.......+..++.|+.++.. +. .....|+.+.+|+.+.+..|.+.+.
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lg------- 264 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLG------- 264 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHT-------
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhC-------
Confidence 44567999999999998654444444333445678889998753 11 2345789999999999999998875
Q ss_pred CCCCchHHHHHHHHHHhhhhcc
Q psy14416 631 FSATSPWWQELKLKCQTNRQVK 652 (1065)
Q Consensus 631 ~~~~~~W~~~~~~~~~~~~~~~ 652 (1065)
|.+++.+..+...+.+
T Consensus 265 ------w~~el~~~~~~~~~~~ 280 (285)
T 3glr_A 265 ------WTEEMRDLVQRETGKL 280 (285)
T ss_dssp ------CHHHHHHHHHHHHHHC
T ss_pred ------CHHHHHHHHHhhHhhh
Confidence 5666666555544443
|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.11 Score=57.96 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccc------------------cccceEEEcCHHH
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNS------------------VQAAVAIQSDVRL 613 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~------------------~~~~~~I~~D~~~ 613 (1065)
....+.+||++|.+|+++.-....++.........++.||.++...+.. ...++.+.+|+.+
T Consensus 214 a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~ 293 (323)
T 1j8f_A 214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ 293 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred HHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHH
Confidence 3456789999999999987544333333333334566788877654332 2368899999999
Q ss_pred HHHHHHHhhc
Q psy14416 614 TVQQLKQMLS 623 (1065)
Q Consensus 614 ~L~~L~~~l~ 623 (1065)
++..|.+.+.
T Consensus 294 ~l~~L~~~lg 303 (323)
T 1j8f_A 294 GCLALAELLG 303 (323)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999988775
|
| >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.36 Score=53.59 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=79.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
.++-.|+|....+..+.+.+||+++|.-|-+|-- -.|.+|. .+.+|..... =.|||-|.+|-+=.-..+.|.
T Consensus 199 ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk~--V~P~lYiA~GISGAiQHlaGm-- 272 (315)
T 1efv_A 199 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQTGKI--VAPELYIAVGISGAIQHLAGM-- 272 (315)
T ss_dssp EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSBC--CCCSEEEEESCCCCHHHHTTT--
T ss_pred EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCH--HheeccCCcc--cCcceEEEecccCcHHHHhhc--
Confidence 3444555665555668999999999998877642 2355554 4456654432 279999999976544444454
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....+|-||.|+.. --+...|..|++|..+++.+|.++++
T Consensus 273 --~~s~~IVAIN~D~~A-pIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 273 --KDSKTIVAINKDPEA-PIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp --TTCSEEEEEESCTTC-GGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred --ccCCEEEEEeCCCCC-CcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 234578889999863 22456899999999999999999885
|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.39 Score=54.22 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=52.1
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+.+||++|.+|+++.-....++......+..++.|+.++...+ ..++.|.+++.+++..|.+.+.
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~~---~~dl~i~g~~~~vl~~L~~~lg 317 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHA---EFDLSLLGYCDDIAAMVAQKCG 317 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTTS---CCSEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCCC---CcCEEEeCCHHHHHHHHHHHcC
Confidence 34567899999999999875444444333334567888999886533 4789999999999999999876
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.41 Score=59.58 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=82.0
Q ss_pred cceeeecceEEEEeccccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEE
Q psy14416 851 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILV 930 (1065)
Q Consensus 851 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1065)
|++....|=+-..-|.+|.+++.+. |+++.. |+..|+
T Consensus 161 gHp~~~tpGve~~tG~LGqGls~Av--G~A~~~--------~~~~v~--------------------------------- 197 (845)
T 3ahc_A 161 SHFAPETPGSIHEGGELGYALSHAY--GAVMNN--------PSLFVP--------------------------------- 197 (845)
T ss_dssp SSCCTTSTTCSCCCSSTTCHHHHHH--HHHTTC--------TTCEEE---------------------------------
T ss_pred CCCCCCCCCeecCCCCccchHhHHh--hhhhcC--------CCCeEE---------------------------------
Confidence 4444445545555566666665555 666655 778888
Q ss_pred EEeccccccCcchhhHHHhhccCc--cccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCC--CCCccHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGE--VTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSL--GPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 1006 (1065)
+++|||-. . ...|+...|... ..+++.-.++|++.||+ . ++. ++.+ ...-++.+
T Consensus 198 ~~~GDGe~-e--~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~-~-i~g-----------------~t~l~~~~~e~l~~ 255 (845)
T 3ahc_A 198 CIIGDGEA-E--TGPLATGWQSNKLVNPRTDGIVLPILHLNGY-K-IAN-----------------PTILARISDEELHD 255 (845)
T ss_dssp EEEETTGG-G--SHHHHHHGGGGGSCCTTTSCEEEEEEEECSB-S-SSS-----------------BCHHHHSCHHHHHH
T ss_pred EEECCCch-h--hhcchhhhHHhhhhhhhcCCCEEEEEECCCC-c-CCC-----------------CccccccCcHHHHH
Confidence 99999986 1 223333322222 34566667777777784 1 111 1111 12356788
Q ss_pred HHHHcCCCeE-eeC-----CHHHHHHHHHHHH---------------h-cCCCC--EEEEEEeCCCC
Q psy14416 1007 MMAVFGHDGY-LCT-----TVPQIKQAMKKCL---------------Q-TTTRP--SLINILINPSA 1049 (1065)
Q Consensus 1007 ~~~~~g~~~~-~~~-----~~~~l~~~~~~~~---------------~-~~~~~--~li~~~~~~~~ 1049 (1065)
..++||.+-+ .|. +.+++.++|.+++ + .+++| ++|-+.|....
T Consensus 256 rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 256 FFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp HHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTT
T ss_pred HHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccC
Confidence 8999999887 654 6788887765433 2 13689 99999997665
|
| >4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.49 Score=55.04 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=52.1
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+.+||++|++|+++.-....++....+...+++.|+.++... ...|+.+.++..+++..|.+.+.
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~---~~~Dl~l~G~cdevv~~L~~~LG 455 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 455 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC---CCccEEEeCCHHHHHHHHHHHhC
Confidence 3456789999999999987544444433334456788899988653 24699999999999999999886
|
| >2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C* | Back alignment and structure |
|---|
Probab=89.64 E-value=0.69 Score=46.72 Aligned_cols=133 Identities=15% Similarity=0.238 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------H
Q psy14416 488 ELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------A 550 (1065)
Q Consensus 488 ~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~ 550 (1065)
..++++++|..|++.+|+-|.|..-+++...+++|+++| |.-|- --|.+ |..|-+-.-++. .
T Consensus 35 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhMNVLLAEA~VPYd~v~EMd 113 (203)
T 2fsv_C 35 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA-GRMPGHMNVLLAEANVPYDEVFELE 113 (203)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC-SSSTTHHHHHHHHTTCCGGGEEEHH
T ss_pred CHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccc-cCCCCCccEEEEEecCCHHHHhhHH
Confidence 456788999999999999998877666666666666655 55442 22222 233321111111 1
Q ss_pred HHHhhhcCCCEEEEeCCccc---------cccccCCC--ccccCCCeEEEecCChh----hcc--ccc-ccceEEEcCHH
Q psy14416 551 ARTHALQNADLVLLLGARLN---------WILHFGRA--PRFKSNVKIIQVDLNAE----ELH--NSV-QAAVAIQSDVR 612 (1065)
Q Consensus 551 ~~~~al~~aDlVI~iG~~~~---------~~~~~g~~--~~~~~~~~iI~Vd~d~~----~~~--~~~-~~~~~I~~D~~ 612 (1065)
..+..+.+.|++|++|+.-. ....+|.+ .-| +.+++|.+..+-. -++ -++ .-+.-+.+|++
T Consensus 114 eIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK 192 (203)
T 2fsv_C 114 EINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVW-KAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAK 192 (203)
T ss_dssp HHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHH
T ss_pred HHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccc-cCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHH
Confidence 34567789999999996532 11233432 112 2345555544321 111 122 34556899999
Q ss_pred HHHHHHHHhh
Q psy14416 613 LTVQQLKQML 622 (1065)
Q Consensus 613 ~~L~~L~~~l 622 (1065)
..+++|...+
T Consensus 193 ~~~~~l~~~l 202 (203)
T 2fsv_C 193 KMTEQIVQAM 202 (203)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
| >1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C* | Back alignment and structure |
|---|
Probab=89.59 E-value=0.74 Score=45.51 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~~ 551 (1065)
.++++++|..|++.+|+-|.|..-+++...+++|++.| |.-|- --|.+ |..|.+-.-++. ..
T Consensus 13 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhmNVLLAEA~VPYd~v~EMde 91 (180)
T 1pno_A 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA-GRMPGHMNVLLAEANVPYDEVFELEE 91 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC-TTSTTHHHHHHHHTTCCGGGEEEHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc-ccCCCcceEEEEeeCCCHHHHhhHHH
Confidence 56788999999999999998877666666666666655 55442 22222 233321111111 13
Q ss_pred HHhhhcCCCEEEEeCCcccc---------ccccCCC--ccccCCCeEEEecCChhhcc-------ccc-ccceEEEcCHH
Q psy14416 552 RTHALQNADLVLLLGARLNW---------ILHFGRA--PRFKSNVKIIQVDLNAEELH-------NSV-QAAVAIQSDVR 612 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~---------~~~~g~~--~~~~~~~~iI~Vd~d~~~~~-------~~~-~~~~~I~~D~~ 612 (1065)
.+..+.+.|++|++|+.-.- ....|.+ .-| +.+++|.+..+-. .+ -++ .-+.-+.+|++
T Consensus 92 IN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~-kAk~ViV~KRsm~-~GyAgv~NpLF~~~nt~MlfGDAK 169 (180)
T 1pno_A 92 INSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVE-KAGTVLFIKRSMA-SGYAGVENELFFRNNTMMLFGDAK 169 (180)
T ss_dssp HGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGG-GSSEEEEEESSSC-CCTTCCCCGGGTSTTEEEEESCHH
T ss_pred HhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechh-hCCEEEEEECCCC-CCcCCCcCcceecCCceEEeccHH
Confidence 45677899999999965321 1223432 112 2345554544321 11 122 34556899999
Q ss_pred HHHHHHHHhh
Q psy14416 613 LTVQQLKQML 622 (1065)
Q Consensus 613 ~~L~~L~~~l 622 (1065)
..+++|...+
T Consensus 170 ~~~~~l~~~l 179 (180)
T 1pno_A 170 KMTEQIVQAM 179 (180)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987765
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=89.16 E-value=1.4 Score=49.27 Aligned_cols=118 Identities=9% Similarity=-0.042 Sum_probs=80.7
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc-ccc--------cCcceEeecCCCccCCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN-AQI--------NCWPMLVIGGSCAQDHEGIGG 374 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e-A~~--------~~vPLlvItg~~p~~~~g~ga 374 (1065)
-|++.+ ..|+++.-+|.|+|.. |.-.++-.|.++.+.-++..+.+ +.. .+.|++++..... . .+-+.
T Consensus 52 ~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~-~~G~t 128 (338)
T 1qs0_B 52 SRVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G-IYGGQ 128 (338)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S-SSCCS
T ss_pred CcEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C-CCCcc
Confidence 388876 7999999999999987 54333334788887666666542 322 2589998863222 1 22245
Q ss_pred CCccChhhhhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhhhh
Q psy14416 375 FQECPQVELARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ 430 (1065)
Q Consensus 375 ~Q~idQ~~l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~~~ 430 (1065)
+|...+..+++.+-.+. ....++.++...+..|++. .+||+|..|..+...
T Consensus 129 h~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~-----~~Pv~i~~p~~l~r~ 180 (338)
T 1qs0_B 129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC-----DDPVIFLEPKRLYNG 180 (338)
T ss_dssp SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEEEGGGSSS
T ss_pred cccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc-----CCcEEEEEchHhhcC
Confidence 56666678888887764 4567888888888888762 589999888666543
|
| >1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.76 Score=46.55 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------H
Q psy14416 488 ELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------A 550 (1065)
Q Consensus 488 ~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~ 550 (1065)
..++++++|..|++.+|+-|.|..-+++...+++|+++| |.-|- --|.+ |..|-+-.-++. .
T Consensus 34 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhMNVLLAEA~VPYd~v~EMd 112 (207)
T 1djl_A 34 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVA-GRMPGQLNVLLAEAGVPYDIVLEMD 112 (207)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC-SSSTTHHHHHHHHTTCCGGGEEEHH
T ss_pred CHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccC-CCCCCCCcEEEEEeCCCHHHHhhHH
Confidence 346788999999999999998877666666666666655 55442 22222 233321111111 1
Q ss_pred HHHhhhcCCCEEEEeCCccc---------cccccCCC--ccccCCCeEEEecCChh----hcc--ccc-ccceEEEcCHH
Q psy14416 551 ARTHALQNADLVLLLGARLN---------WILHFGRA--PRFKSNVKIIQVDLNAE----ELH--NSV-QAAVAIQSDVR 612 (1065)
Q Consensus 551 ~~~~al~~aDlVI~iG~~~~---------~~~~~g~~--~~~~~~~~iI~Vd~d~~----~~~--~~~-~~~~~I~~D~~ 612 (1065)
..+..+.+.|++|++|+.-. ....+|.+ .-| +.+++|.+..+-. -++ -++ .-+.-+.+|++
T Consensus 113 eIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK 191 (207)
T 1djl_A 113 EINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVW-KSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAK 191 (207)
T ss_dssp HHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHH
T ss_pred HHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecce-ecCEEEEEECCCCCCcCCCcCcceecCCceEEeccHH
Confidence 34567789999999997632 11234442 122 2345555544321 111 122 34556899999
Q ss_pred HHHHHHHHhhc
Q psy14416 613 LTVQQLKQMLS 623 (1065)
Q Consensus 613 ~~L~~L~~~l~ 623 (1065)
..+++|...++
T Consensus 192 ~~~~~l~~~l~ 202 (207)
T 1djl_A 192 KTCDALQAKVR 202 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988876
|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=0.41 Score=52.58 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=48.5
Q ss_pred hhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh-cc-cccccceEEEcCHHHHHHHHHHhhc
Q psy14416 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~-~~-~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+||++|.+|+++.-....++......+.+++.||.++.. +. .....++.+.+|+.++|..|.+.+.
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 467999999999998654333333333346788889998763 21 1234689999999999999988775
|
| >1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4 | Back alignment and structure |
|---|
Probab=88.35 E-value=0.84 Score=45.29 Aligned_cols=133 Identities=18% Similarity=0.257 Sum_probs=78.1
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~~ 551 (1065)
.++++++|..|++.+|+-|.|..-+++...+++|++.| |.-|- --|.+ |..|.+-.-++. ..
T Consensus 12 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA-GRMPGhMNVLLAEA~VPYd~v~EMde 90 (184)
T 1d4o_A 12 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVA-GRMPGQLNVLLAEAGVPYDIVLEMDE 90 (184)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTC-SSSTTHHHHHHHHHTCCGGGEEEHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc-ccCCCcceEEEEEecCCHHHHHhHHH
Confidence 56788899999999999998876666666666666655 55442 22222 233321111111 13
Q ss_pred HHhhhcCCCEEEEeCCccc---------cccccCCC--ccccCCCeEEEecCChh----hcc--ccc-ccceEEEcCHHH
Q psy14416 552 RTHALQNADLVLLLGARLN---------WILHFGRA--PRFKSNVKIIQVDLNAE----ELH--NSV-QAAVAIQSDVRL 613 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~---------~~~~~g~~--~~~~~~~~iI~Vd~d~~----~~~--~~~-~~~~~I~~D~~~ 613 (1065)
.+..+.+.|++|++|+.-. .....|.+ .-| +.+++|.+..+-. .++ -++ .-+.-+.+|++.
T Consensus 91 IN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~ 169 (184)
T 1d4o_A 91 INHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVW-KSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKK 169 (184)
T ss_dssp HGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGG-GSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHH
T ss_pred HhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehh-hCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHH
Confidence 4567789999999997632 11234432 122 2334554543321 111 122 345568999999
Q ss_pred HHHHHHHhhc
Q psy14416 614 TVQQLKQMLS 623 (1065)
Q Consensus 614 ~L~~L~~~l~ 623 (1065)
.+++|...++
T Consensus 170 ~~~~l~~~l~ 179 (184)
T 1d4o_A 170 TCDALQAKVR 179 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988876
|
| >1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2 | Back alignment and structure |
|---|
Probab=87.98 E-value=0.53 Score=52.07 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=76.8
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
.++-.|+|....+..+.+.+||+++|.-|-++-- -.|.+|. .+.+|..... =.|+|-|.+|-+=.-..+.|.
T Consensus 194 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk~--V~P~lYiA~GISGAiQHlaGm-- 267 (307)
T 1efp_A 194 RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPN--DWQVGQTGKV--VAPELYVAVGISGAIQHLAGM-- 267 (307)
T ss_dssp EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSSSSBC--CCCSEEEEESCCCCHHHHTTT--
T ss_pred EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeccCCcc--cCCceEEEEeccCcHHHHhhh--
Confidence 3444555655445568999999999998877642 2355554 3456644432 279999999976544444454
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
.....+|-||.|+.. --+...|..|++|..+++.+|.+++
T Consensus 268 --~~s~~IVAIN~D~~A-pIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 268 --KDSKVIVAINKDEEA-PIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp --TTCSEEEEEESCTTC-GGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred --ccCCEEEEEeCCCCC-CcccccCeEEeeeHHHHHHHHHhhC
Confidence 234578889999863 2245689999999999999998753
|
| >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 | Back alignment and structure |
|---|
Probab=87.71 E-value=0.64 Score=52.55 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=48.0
Q ss_pred hhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh-cc-cccccceEEEcCHHHHHHHHHHhhc
Q psy14416 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE-LH-NSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~-~~-~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+||++|.+|+++.-....++......+.+++.|+.++.. +. .....++.|.+|+.++|..|.+.+.
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg 286 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 286 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC
Confidence 457999999999998654444443333346788889998763 11 1234689999999999999988765
|
| >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* | Back alignment and structure |
|---|
Probab=87.68 E-value=0.54 Score=52.33 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=78.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
.++-.|+|....+..+.+.+||+++|.-|-++-- -.|.+|. .+.+|.... .+..|+|-|.+|-+=.-..+.|.
T Consensus 204 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk-~V~P~~lYiA~GISGAiQHlaGm-- 278 (320)
T 1o97_D 204 FIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPK--SRQVGQSGK-VVGSCKLYVAMGISGSIQHMAGM-- 278 (320)
T ss_dssp EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB-CCTTCSEEEEESCCCCHHHHHHH--
T ss_pred EEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeecCce-EecccceEEEEeccCcHHHHhhc--
Confidence 3444555666556678999999999998877642 2355554 445665443 33344999999976444344443
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....+|-||.|+.. --+...|..|++|..+++.+|.++++
T Consensus 279 --~~s~~IVAIN~D~~A-pIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 279 --KHVPTIIAVNTDPGA-SIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp --TTCSEEEEECSCTTC-GGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred --ccCCEEEEEeCCCCC-CcccccCeEEeeeHHHHHHHHHHHHh
Confidence 234578889999863 22456899999999999999998874
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
|---|
Probab=87.12 E-value=1 Score=50.06 Aligned_cols=116 Identities=8% Similarity=-0.108 Sum_probs=76.9
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc-ccc--------cCcceEeecCCCccCCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN-AQI--------NCWPMLVIGGSCAQDHEGIGG 374 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e-A~~--------~~vPLlvItg~~p~~~~g~ga 374 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.|.++.+.-++..+.+ +-. .++|++++.. +.....+ +.
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~-g~ 126 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHT-PE 126 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCC-CT
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCC-CC
Confidence 477764 4999999999999986 54333334788887666666643 222 7899998843 2222112 22
Q ss_pred CCccChhhhhcccccEE-eeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhh
Q psy14416 375 FQECPQVELARPYCKYS-ARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLL 428 (1065)
Q Consensus 375 ~Q~idQ~~l~~~~~k~s-~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~ 428 (1065)
.+...+..+++.+..+. ....++.++...+.+|++ .++||+|.-|..+.
T Consensus 127 ~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~ 176 (324)
T 1w85_B 127 LHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIFLEHLKLY 176 (324)
T ss_dssp TSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEEEETTTS
T ss_pred cccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEEEechHhc
Confidence 22223448899888754 456788888888888885 35899998886654
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=87.01 E-value=0.85 Score=51.23 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=78.6
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccccc---------ccCcceEeecCCCccCCCCCC-
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQ---------INCWPMLVIGGSCAQDHEGIG- 373 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~eA~---------~~~vPLlvItg~~p~~~~g~g- 373 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.+.++.+.-++..+..+- ..+.||+++... ...- +.|
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g-~~G~ 138 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASA-GVAA 138 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCS-SCCG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCC-CCCc
Confidence 478877 6999999999999976 5433333467887766666665433 278999987653 2211 122
Q ss_pred CC-CccChhhhhcccccEEe-eCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhh
Q psy14416 374 GF-QECPQVELARPYCKYSA-RPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLL 428 (1065)
Q Consensus 374 a~-Q~idQ~~l~~~~~k~s~-~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~ 428 (1065)
.+ |.+| .+++.+..+.. ...++.++...++.|++. ++||+|..|..+.
T Consensus 139 tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~i~~~~~~~ 188 (341)
T 2ozl_B 139 QHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD-----NNPVVVLENELMY 188 (341)
T ss_dssp GGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEECHHHH
T ss_pred chhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc-----CCCEEEEEChhhh
Confidence 23 5554 78888877754 567888888888888762 5899999997653
|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 | Back alignment and structure |
|---|
Probab=86.66 E-value=0.55 Score=49.89 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=49.2
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcccc-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+++||++|.+|+++.-....++..... .+.+++.|+.++...+. ..++.|.+++.++|.+|.+.+.
T Consensus 161 a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~--~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 161 IYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCc--cccEEEeCCHHHHHHHHHHHHH
Confidence 3456778999999999986533333322211 35788999999876654 4688999999999999987653
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
|---|
Probab=86.38 E-value=0.89 Score=51.07 Aligned_cols=118 Identities=7% Similarity=-0.070 Sum_probs=80.2
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEeccccccccccccc-ccccc--------Cc-ceEeecCCCccCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMA-NAQIN--------CW-PMLVIGGSCAQDHEGIG 373 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~-eA~~~--------~v-PLlvItg~~p~~~~g~g 373 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.|.++.+.-++..+. .+... +. ||+++.. +.... +-+
T Consensus 67 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~-~~g~~-~G~ 143 (342)
T 2bfd_B 67 DRVFNTPLCEQGIVGFGIGIAVT-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP-WGCVG-HGA 143 (342)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEE-ESCCS-SCG
T ss_pred CeEEEcCcCHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEe-cCCCC-CCc
Confidence 478876 4999999999999987 5434443578888776666654 23222 23 9998843 32221 224
Q ss_pred CCCccChhhhhcccccE-EeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhhhh
Q psy14416 374 GFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQ 430 (1065)
Q Consensus 374 a~Q~idQ~~l~~~~~k~-s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~~~ 430 (1065)
.+|...+..+++.+..+ .....++.++...+..|++ . ++||+|-.|..+...
T Consensus 144 th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i~~p~~l~r~ 196 (342)
T 2bfd_B 144 LYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----D-KNPCIFFEPKILYRA 196 (342)
T ss_dssp GGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----S-SSCEEEEEEGGGTTS
T ss_pred chhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----c-CCcEEEEecchhcCC
Confidence 56666667888888775 4456788888888888876 2 589999888666443
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=85.88 E-value=1.3 Score=49.31 Aligned_cols=117 Identities=12% Similarity=-0.024 Sum_probs=76.6
Q ss_pred ceEEEc-cCCchHHHHHHHHHHHhCCCeEEEEecccccccccccccc--cc---c----cCcceEeecCCCccCCCCCCC
Q psy14416 305 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN--AQ---I----NCWPMLVIGGSCAQDHEGIGG 374 (1065)
Q Consensus 305 i~~i~~-~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~av~e--A~---~----~~vPLlvItg~~p~~~~g~ga 374 (1065)
-|++.+ ..|+++.-+|.|+|.. |...++-.|.++.+.-++..+.+ |. . .++|++++.. +.....+-..
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 128 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH 128 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc
Confidence 366655 9999999999999986 54333334688877655555543 22 1 6899998763 2221111111
Q ss_pred CCccChhhhhcccccE-EeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChhhhh
Q psy14416 375 FQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLA 429 (1065)
Q Consensus 375 ~Q~idQ~~l~~~~~k~-s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~Dv~~ 429 (1065)
+|. .+..+++.+..+ .....++.++...+.+|++ .++||+|--|..+..
T Consensus 129 hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~~ 178 (324)
T 1umd_B 129 HSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVFLEPKRLYR 178 (324)
T ss_dssp SSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEEEEEGGGSS
T ss_pred cch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEEEechHhcC
Confidence 222 234888888775 4567788888888888885 358999988876643
|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* | Back alignment and structure |
|---|
Probab=84.35 E-value=1.1 Score=50.12 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=51.6
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+++.+||++|++|+++.-....++... .....+++.||.++...+. ..++.|.+++.++|..|.+.|.
T Consensus 200 A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~--~adl~i~g~a~evl~~L~~~Lg 270 (355)
T 3pki_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDR--HADLRIHGYVDEVMTRLMEHLG 270 (355)
T ss_dssp HHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCC--ccCEEEeCCHHHHHHHHHHHhC
Confidence 34567899999999999865444444321 1235678889998866553 4688999999999999998875
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=83.66 E-value=6.6 Score=43.48 Aligned_cols=109 Identities=11% Similarity=-0.023 Sum_probs=70.7
Q ss_pred CeEEEe-cChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHHHhh--cc-------cCCCcEEEEecCCCCCcCccCC
Q psy14416 47 IHYIGM-RNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMAN--AQ-------INCWPMLVIGGSCAQDHEGIGG 116 (1065)
Q Consensus 47 i~~v~~-rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~gla~--A~-------~~~~Pll~Isg~~~~~~~g~~~ 116 (1065)
-+++.+ ..|+++..+|.|++.. |...++-.+.++.+.-+...+.. |+ ..+.|++++.. ......+...
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 128 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH 128 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc
Confidence 366666 9999999999999886 76555545788887655556643 32 16899998763 2221122222
Q ss_pred Ccccchhhhcccccce-eccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 117 FQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 117 ~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
||.. +..+++.+..+ .....++.+....+..|++ .++|+.+
T Consensus 129 hs~~-~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i 170 (324)
T 1umd_B 129 HSQS-PEAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVF 170 (324)
T ss_dssp SSCC-CHHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEE
T ss_pred cchh-HHHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEE
Confidence 3333 34777777653 5556677778888887775 3478776
|
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* | Back alignment and structure |
|---|
Probab=83.48 E-value=0.71 Score=49.41 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=49.3
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+++||++|.+|+++.-....++.... ..+.+++.||.++...+. ..++.|.+++.++|.+|.+.|.
T Consensus 175 ~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 175 IGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHcC
Confidence 45667899999999876543332221111 236788999999877654 3589999999999999987763
|
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.36 E-value=1.2 Score=49.44 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+.+||++|++|+++.-....++... .....+++.||.++...+. ..++.|.+++.++|..|.+.|.
T Consensus 200 a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~--~adl~i~g~~~evl~~L~~~Lg 270 (318)
T 3k35_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDR--HADLRIHGYVDEVMTRLMKHLG 270 (318)
T ss_dssp HHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCC--cccEEEeCCHHHHHHHHHHHhC
Confidence 34567899999999999864433333211 1235678889998866553 4688999999999999998875
|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=0.86 Score=48.95 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=49.6
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+++||++|.+|+++.-....++.... ..+.+++.||.++...+. ..++.|.+++.++|.+|.+.++
T Consensus 177 a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 177 AIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCC--ceeEEEeCCHHHHHHHHHHHHH
Confidence 345667899999999986543332221111 235788999998876654 3589999999999999977664
|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* | Back alignment and structure |
|---|
Probab=81.38 E-value=1 Score=48.16 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=48.6
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.+.+++||++|.+|+++.-....++.... ..+.+++.||.++...+. ..++.+.+++.++|.+|.+.+.
T Consensus 172 ~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 172 MREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHHH
Confidence 34567899999999876533222221111 246788999999877654 3588999999999999877654
|
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=1.2 Score=48.25 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=47.5
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHH
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 619 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~ 619 (1065)
.+.+.+||++|.+|+++.-....++... ...+.+++.||.++...+. ..++.|.+++.++|.+|.
T Consensus 207 ~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~--~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 207 DRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHh
Confidence 3456789999999999864433333221 1246788999998877664 568999999999998874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1065 | ||||
| d1t9ba2 | 175 | c.36.1.5 (A:89-263) Acetohydroxyacid synthase cata | 1e-33 | |
| d1t9ba2 | 175 | c.36.1.5 (A:89-263) Acetohydroxyacid synthase cata | 1e-29 | |
| d1ybha2 | 195 | c.36.1.5 (A:86-280) Acetohydroxyacid synthase cata | 2e-32 | |
| d1ybha2 | 195 | c.36.1.5 (A:86-280) Acetohydroxyacid synthase cata | 1e-28 | |
| d1ozha2 | 181 | c.36.1.5 (A:7-187) Catabolic acetolactate synthase | 2e-25 | |
| d1ozha2 | 181 | c.36.1.5 (A:7-187) Catabolic acetolactate synthase | 1e-20 | |
| d2ji7a2 | 188 | c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalo | 5e-23 | |
| d2ji7a2 | 188 | c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalo | 8e-18 | |
| d2ihta2 | 186 | c.36.1.5 (A:12-197) Carboxyethylarginine synthase | 2e-21 | |
| d2ihta2 | 186 | c.36.1.5 (A:12-197) Carboxyethylarginine synthase | 1e-14 | |
| d2ji7a1 | 175 | c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxa | 8e-21 | |
| d2djia2 | 184 | c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus vi | 1e-20 | |
| d2djia2 | 184 | c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus vi | 2e-16 | |
| d2ez9a2 | 174 | c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus | 4e-20 | |
| d2ez9a2 | 174 | c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus | 6e-16 | |
| d1q6za1 | 160 | c.31.1.3 (A:182-341) Benzoylformate decarboxylase | 8e-19 | |
| d1pvda2 | 180 | c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's | 1e-18 | |
| d1pvda2 | 180 | c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's | 2e-14 | |
| d1ozha1 | 179 | c.31.1.3 (A:188-366) Catabolic acetolactate syntha | 1e-18 | |
| d1ybha1 | 179 | c.31.1.3 (A:281-459) Acetohydroxyacid synthase cat | 1e-17 | |
| d1q6za2 | 180 | c.36.1.5 (A:2-181) Benzoylformate decarboxylase {P | 2e-17 | |
| d1q6za2 | 180 | c.36.1.5 (A:2-181) Benzoylformate decarboxylase {P | 8e-14 | |
| d1ovma1 | 161 | c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxyla | 2e-17 | |
| d2ihta1 | 177 | c.31.1.3 (A:198-374) Carboxyethylarginine synthase | 4e-17 | |
| d1pvda1 | 179 | c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker | 1e-16 | |
| d1ytla1 | 158 | c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synth | 1e-16 | |
| d1ovma2 | 178 | c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase | 7e-16 | |
| d1ovma2 | 178 | c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase | 2e-13 | |
| d1zpda2 | 186 | c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomon | 1e-15 | |
| d1zpda2 | 186 | c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomon | 2e-12 | |
| d1zpda1 | 175 | c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymom | 6e-15 | |
| d2ez9a1 | 183 | c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacill | 6e-13 | |
| d1t9ba1 | 171 | c.31.1.3 (A:290-460) Acetohydroxyacid synthase cat | 6e-12 | |
| d2djia1 | 177 | c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus | 3e-09 | |
| d1zpda3 | 204 | c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymom | 5e-06 | |
| d1pvda3 | 196 | c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker | 3e-05 | |
| d2ji7a3 | 183 | c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxa | 2e-04 | |
| d2ji7a3 | 183 | c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxa | 0.004 | |
| d1ybha3 | 208 | c.36.1.9 (A:460-667) Acetohydroxyacid synthase cat | 0.001 |
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 125 bits (314), Expect = 1e-33
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMA-CQQEGIHYIGMRNEQAACYAAQAIGY 325
L+ Q+ + + Q ++ VFG G ++ + A + +++ ++EQ A + A+
Sbjct: 4 LTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYAR 63
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 385
+ KPGV LV SGPG + MA+A + PM+V G G FQE V ++R
Sbjct: 64 ASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISR 123
Query: 386 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
K++ ++ + + +A ++T G+PG +D P ++ A +
Sbjct: 124 SCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAIL 170
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 113 bits (284), Expect = 1e-29
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMA-CQQEGIHYIGMRNEQAACYAAQAIGY 67
L+ Q+ + + Q ++ VFG G ++ + A + +++ ++EQ A + A+
Sbjct: 4 LTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYAR 63
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELAR 127
+ KPGV LV SGPG + MA+A + PM+V G G FQE V ++R
Sbjct: 64 ASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISR 123
Query: 128 PYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
K++ ++ + + +A ++T G+PG L+ +LP+
Sbjct: 124 SCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLV--DLPK 163
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 122 bits (308), Expect = 2e-32
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 1/170 (0%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 322
D+ ++ +AL+ QG+E VF G +E+ A + I + R+EQ +AA+
Sbjct: 9 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEG 68
Query: 323 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 382
+ KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 69 YARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 128
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
+ R K++ ++ I + +E+A L+T G+PG +D P ++ Q
Sbjct: 129 VTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLA 178
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 112 bits (280), Expect = 1e-28
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQA 64
D+ ++ +AL+ QG+E VF G +E+ A + I + R+EQ +AA+
Sbjct: 9 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEG 68
Query: 65 IGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVE 124
+ KPG+C+ SGPG + G+A+A ++ P++ I G + G FQE P VE
Sbjct: 69 YARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVE 128
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
+ R K++ ++ I + +E+A L+T G+PG L+ ++P+
Sbjct: 129 VTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLV--DVPK 171
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Score = 102 bits (254), Expect = 2e-25
Identities = 46/177 (25%), Positives = 82/177 (46%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
+ ++ L+ QG+ VFGI G + ++ + I I +R+E A + A A+G
Sbjct: 3 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVG 62
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
+T K GV LV SGPG + GMA A P++ +GG+ + + Q V +
Sbjct: 63 RITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMF 122
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
P KY+ + + V A R + G+PG +++ P +++ ++ L +
Sbjct: 123 SPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLPASG 179
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Score = 88.5 bits (218), Expect = 1e-20
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
+ ++ L+ QG+ VFGI G + ++ + I I +R+E A + A A+G
Sbjct: 3 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVG 62
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 126
+T K GV LV SGPG + GMA A P++ +GG+ + + Q V +
Sbjct: 63 RITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMF 122
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDA 174
P KY+ + + V A R + G+PG + + +LP+ +D
Sbjct: 123 SPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFV--SLPQDVVDG 168
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Score = 95.5 bits (236), Expect = 5e-23
Identities = 69/189 (36%), Positives = 100/189 (52%), Gaps = 4/189 (2%)
Query: 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 324
E V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A YAA G
Sbjct: 2 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAG 61
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI--GGSCAQDHEGIGGFQECPQVE 382
Y+ KPGVCL VS PG L+ +A+A NC+PM+++ G ++E Q+
Sbjct: 62 YIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMN 121
Query: 383 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPK 442
+ARP+CK S R +I I + +AVR + G+PG Y+D PA L Q I+
Sbjct: 122 VARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEE--ANKL 179
Query: 443 VLEPTLPWP 451
+ +P P P
Sbjct: 180 LFKPIDPAP 188
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Score = 80.5 bits (197), Expect = 8e-18
Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIG 66
E V+ ALK I+ ++G+VGIP+ LA Q +G + R+EQ A YAA G
Sbjct: 2 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAG 61
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVI--GGSCAQDHEGIGGFQECPQVE 124
Y+ KPGVCL VS PG L+ +A+A NC+PM+++ G ++E Q+
Sbjct: 62 YIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMN 121
Query: 125 LARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDA 174
+ARP+CK S R +I I + +AVR + G+PG + +LP
Sbjct: 122 VARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYV--DLPAKLFGQ 169
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Score = 90.5 bits (223), Expect = 2e-21
Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 2/183 (1%)
Query: 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
+A + L+ G+ VFG+VG + + EGI ++ R+E A AA + +T
Sbjct: 2 TAAHALLSRLRDHGVGKVFGVVGREAASILFD-EVEGIDFVLTRHEFTAGVAADVLARIT 60
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQ-DHEGIGGFQECPQVELARP 386
+P C GPG+ + G+A + ++ P++ + D Q V + P
Sbjct: 61 GRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAP 120
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTPKVLEP 446
KY+ H I V+ AV + G S++ P +LL VP P P
Sbjct: 121 MSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVPNPPANTP 180
Query: 447 TLP 449
P
Sbjct: 181 AKP 183
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Score = 71.2 bits (173), Expect = 1e-14
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Query: 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
+A + L+ G+ VFG+VG + + EGI ++ R+E A AA + +T
Sbjct: 2 TAAHALLSRLRDHGVGKVFGVVGREAASILFD-EVEGIDFVLTRHEFTAGVAADVLARIT 60
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQ-DHEGIGGFQECPQVELARP 128
+P C GPG+ + G+A + ++ P++ + D Q V + P
Sbjct: 61 GRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAP 120
Query: 129 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
KY+ H I V+ AV + G S + +LP
Sbjct: 121 MSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFI--SLPV 159
|
| >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Score = 88.9 bits (219), Expect = 8e-21
Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA 543
P + +A+ LI AK P++++GKGAAY+Q + E+ + V +PFLP M KG++PD
Sbjct: 4 PAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDN 63
Query: 544 HPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP-RFKSNVKIIQVDLNAEELHNSVQ 602
HP +A R AL D+ +L+GARLNW++ G+ K +Q+D+ A E+ ++
Sbjct: 64 HPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQP 123
Query: 603 AAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNR 649
A + D++ V L++ L + + W LK K N+
Sbjct: 124 IAAPVVGDIKSAVSLLRKALKGAPKAD-----AEWTGALKAKVDGNK 165
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Score = 88.5 bits (218), Expect = 1e-20
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 3/172 (1%)
Query: 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 321
D +++ + + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 322 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 381
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRIN 433
+ Y+ R + + V++A R++ K GV+ L+ P + I+
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAI-AKRGVAVLEVPGDFAKVEID 171
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Score = 76.5 bits (187), Expect = 2e-16
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 5/166 (3%)
Query: 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQ 63
D +++ + + L+ G + ++GI + L AM ++ + ++ +++E+ AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 64 AIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQV 123
GV + GPG H G+ +A ++ P++ I GS Q + FQE Q
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
+ Y+ R + + V++A R++ K G ++L +P
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAI-AKRGVAVL--EVPG 163
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Score = 86.6 bits (213), Expect = 4e-20
Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Query: 267 LSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIG 324
+ A + + L+ G+++++GI G + + A++ +++ IHYI +R+E+ AA A
Sbjct: 3 ILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADA 62
Query: 325 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 384
LT K GVC +GPG H G+ +A+ + P+L + G + FQE + +
Sbjct: 63 KLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIY 122
Query: 385 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRI 432
Y+ N + +++A+R + GV+ + P +L Q+I
Sbjct: 123 ADVADYNVTAVNAATLPHVIDEAIRRAY-AHQGVAVVQIPVDLPWQQI 169
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Score = 74.6 bits (182), Expect = 6e-16
Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 5/163 (3%)
Query: 9 LSANQVIAQALKFQGIEYVFGIVGIPVIEL--AMACQQEGIHYIGMRNEQAACYAAQAIG 66
+ A + + L+ G+++++GI G + + A++ +++ IHYI +R+E+ AA A
Sbjct: 3 ILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADA 62
Query: 67 YLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELA 126
LT K GVC +GPG H G+ +A+ + P+L + G + FQE + +
Sbjct: 63 KLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIY 122
Query: 127 RPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
Y+ N + +++A+R + G +++ +P
Sbjct: 123 ADVADYNVTAVNAATLPHVIDEAIRRAY-AHQGVAVV--QIPV 162
|
| >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Score = 82.2 bits (202), Expect = 8e-19
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 8/148 (5%)
Query: 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN 546
+L + + A P +++G + A + + P P
Sbjct: 7 QDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHP 66
Query: 547 C-------VSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHN 599
C AA + L+ D+VL++GA + + K ++I V + E
Sbjct: 67 CFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEA-A 125
Query: 600 SVQAAVAIQSDVRLTVQQLKQMLSHTQR 627
AI +D+ L ++ + R
Sbjct: 126 RAPMGDAIVADIGAMASALANLVEESSR 153
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.6 bits (203), Expect = 1e-18
Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 9/180 (5%)
Query: 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 325
E++ + + + LK + VFG+ G + L + + A
Sbjct: 2 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYA 61
Query: 326 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG--------SCAQDHEGIGGFQE 377
K + G G L G+A + +L + G H +G
Sbjct: 62 RIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDF 121
Query: 378 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSAL 437
++ + +A +I +++ +R + + YL PANL+ + L
Sbjct: 122 TVFHRMSANISETTAMITDIATAPAEIDRCIRTT-YVTQRPVYLGLPANLVDLNVPAKLL 180
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.3 bits (171), Expect = 2e-14
Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 11/175 (6%)
Query: 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGY 67
E++ + + + LK + VFG+ G + L + + A
Sbjct: 2 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYA 61
Query: 68 LTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGG--------SCAQDHEGIGGFQE 119
K + G G L G+A + +L + G H +G
Sbjct: 62 RIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDF 121
Query: 120 CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPRHRLDA 174
++ + +A +I +++ +R + + L LP + +D
Sbjct: 122 TVFHRMSANISETTAMITDIATAPAEIDRCIRTT-YVTQRPVYL--GLPANLVDL 173
|
| >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Score = 82.3 bits (202), Expect = 1e-18
Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 17/172 (9%)
Query: 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN 546
+ Q ++LI +AK P+ ++G A+ + L + + ++P T G V + +
Sbjct: 8 DAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFS 67
Query: 547 CV--------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELH 598
+ A LQ ADLV+ +G N ++ +D+
Sbjct: 68 RFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAM---WNSGNATLVHIDVLPAYEE 124
Query: 599 NSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 650
+ V + D+ T+ +L Q + H SP E+ Q R+
Sbjct: 125 RNYTPDVELVGDIAGTLNKLAQNIDHR------LVLSPQAAEILRDRQHQRE 170
|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 79.6 bits (195), Expect = 1e-17
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDA 543
P + L+Q RLI E+K P++ +G G S EL FV +P T MG G P
Sbjct: 4 PEDSHLEQIVRLISESKKPVLYVGGGCLNSSD--ELGRFVELTGIPVASTLMGLGSYPCD 61
Query: 544 HPNCV-------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE 596
+ + +A++++DL+L G R + G+ F S KI+ +D+++ E
Sbjct: 62 DELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDR-VTGKLEAFASRAKIVHIDIDSAE 120
Query: 597 LHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ + V++ DV+L +Q + ++L + W EL
Sbjct: 121 IGKNKTPHVSVCGDVKLALQGMNKVLENRAEELK-LDFGVWRNELN 165
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Score = 79.3 bits (194), Expect = 2e-17
Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 2/167 (1%)
Query: 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 327
S + + L+ QGI+ VFG G + E YI E A +
Sbjct: 2 SVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF-PEDFRYILALQEACVVGIADGYAQAS 60
Query: 328 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD-HEGIGGFQECPQVELARP 386
+KP + S G + G ++NA + P++V G + L RP
Sbjct: 61 RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 120
Query: 387 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRIN 433
K+S P + + + +A+ +++ G YL P + + +
Sbjct: 121 LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDAD 167
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Score = 68.9 bits (167), Expect = 8e-14
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 4/161 (2%)
Query: 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLT 69
S + + L+ QGI+ VFG G + E YI E A +
Sbjct: 2 SVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF-PEDFRYILALQEACVVGIADGYAQAS 60
Query: 70 KKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD-HEGIGGFQECPQVELARP 128
+KP + S G + G ++NA + P++V G + L RP
Sbjct: 61 RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 120
Query: 129 YCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLPR 169
K+S P + + + +A+ +++ G L ++P
Sbjct: 121 LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYL--SVPY 159
|
| >d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Score = 78.2 bits (192), Expect = 2e-17
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 9/145 (6%)
Query: 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN 546
A A + +K ++ + L +V + MGKG+ +
Sbjct: 17 AFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAG 76
Query: 547 CV--------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELH 598
+ A A++ AD VL +G R L G + + I+V +A +
Sbjct: 77 FYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLT-PAQTIEVQPHAARVG 135
Query: 599 NSVQAAVAIQSDVRLTVQQLKQMLS 623
+ + + + V+ KQ +
Sbjct: 136 DVWFTGIPMNQAIETLVELCKQHVH 160
|
| >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Score = 78.1 bits (191), Expect = 4e-17
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN 546
QA+ L+ EAK P++++G A S A + + N+P + T + KGV+P H
Sbjct: 7 KAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHEL 66
Query: 547 CV------------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNA 594
A DLVL +G L + K +++
Sbjct: 67 NYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGI-EKKTVRISPTV 125
Query: 595 EELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ + V + +DV V+ + + P +
Sbjct: 126 NPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQ-RHDIEPLRARIA 172
|
| >d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (188), Expect = 1e-16
Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 9/159 (5%)
Query: 477 LEPTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMG 536
L+P + L+ +AK P+++ + + E ++ P TPMG
Sbjct: 8 LKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMG 67
Query: 537 KGVVPDAHPNCV--------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKII 588
KG + + HP A+++ADL+L +GA L+ + G I+
Sbjct: 68 KGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDF-NTGSFSYSYKTKNIV 126
Query: 589 QVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQR 627
+ + ++ N+ V ++ ++ + + +
Sbjct: 127 EFHSDHMKIRNATFPGVQMKFVLQKLLTNIADAAKGYKP 165
|
| >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: ACDE2-like domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 75.8 bits (186), Expect = 1e-16
Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 21/154 (13%)
Query: 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP------MGKGV 539
+ + K + +I +AK PL+I+G E + ++ + T + G+
Sbjct: 6 LEKGKPVANMIKKAKRPLLIVGPDMTDEMF--ERVKKFVEKDITVVATGSAITRFIDAGL 63
Query: 540 VPDAHPNCVSAARTH----------ALQNADLVLLLGARLNWI-LHFGRAPRFKSNVKII 588
+ + N DLVL+LG+ F +++ +
Sbjct: 64 GEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRAL 123
Query: 589 QVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622
+D N+ + + ++ L ++L
Sbjct: 124 AIDRYYHP--NADMSFGNLWKKEEDYLKLLDEIL 155
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Score = 74.6 bits (182), Expect = 7e-16
Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 12/172 (6%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAIGYLTKK 329
+ L G +++FG+ G ++ I ++G NE A YAA
Sbjct: 7 DYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGF 66
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--------CPQV 381
+ G G L G+A + P+L I G+ + G
Sbjct: 67 AALL-TTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFY 125
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRIN 433
++ P A + + + +PG YL PA++ +
Sbjct: 126 HMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG--YLMLPADVAKKAAT 175
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Score = 67.2 bits (163), Expect = 2e-13
Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 10/156 (6%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMAC-QQEGIHYIGMRNEQAACYAAQAIGYLTKK 71
+ L G +++FG+ G ++ I ++G NE A YAA
Sbjct: 7 DYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGF 66
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--------CPQV 123
+ G G L G+A + P+L I G+ + G
Sbjct: 67 AALL-TTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFY 125
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 159
++ P A + + + +PG
Sbjct: 126 HMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG 161
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Score = 74.1 bits (181), Expect = 1e-15
Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 13/184 (7%)
Query: 271 QVIAQALKFQGIEYVFGIVGIPVIELAMA-CQQEGIHYIGMRNEQAACYAAQAIGYLTKK 329
+A+ L G+++ F + G + L + + + NE ++A+ K
Sbjct: 6 TYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYAR-AKG 64
Query: 330 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP--------QV 381
+V G L F + A P+++I G+ + G Q+
Sbjct: 65 AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQL 124
Query: 382 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPANLLAQRINQSALVPTP 441
E+A+ + ++ ++ + K V YL+ N+ + +A P
Sbjct: 125 EMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPV-YLEIACNIASMPC--AAPGPAS 181
Query: 442 KVLE 445
+
Sbjct: 182 ALFN 185
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Score = 64.9 bits (157), Expect = 2e-12
Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 10/155 (6%)
Query: 13 QVIAQALKFQGIEYVFGIVGIPVIELAMA-CQQEGIHYIGMRNEQAACYAAQAIGYLTKK 71
+A+ L G+++ F + G + L + + + NE ++A+ K
Sbjct: 6 TYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYAR-AKG 64
Query: 72 PGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECP--------QV 123
+V G L F + A P+++I G+ + G Q+
Sbjct: 65 AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQL 124
Query: 124 ELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158
E+A+ + ++ ++ + K
Sbjct: 125 EMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK 159
|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Score = 71.8 bits (175), Expect = 6e-15
Identities = 17/151 (11%), Positives = 48/151 (31%), Gaps = 10/151 (6%)
Query: 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPN 546
A + + + I V++G + AE + F ++ K P+ +
Sbjct: 10 AAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENAL 69
Query: 547 CV--------SAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELH 598
+ ++ AD V+ L N K++ + + ++
Sbjct: 70 YIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDY-STTGWTDIPDPKKLVLAEPRSVVVN 128
Query: 599 NSVQAAVAIQSDVRLTVQQLKQMLSHTQRNW 629
+V ++ + Q++ + + + +
Sbjct: 129 GIRFPSVHLKDYLTRLAQKVSKK-TGSLDFF 158
|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Score = 66.2 bits (160), Expect = 6e-13
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 19/179 (10%)
Query: 479 PTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKG 538
P LP P + + + ++ +L A+ PL+ G GA +A EL + +P + T KG
Sbjct: 10 PLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPAKG 67
Query: 539 VVPDAHP-------NCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVD 591
+V D +P AL AD+VL +G + FK+ +Q+D
Sbjct: 68 IVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVS---KAFKNTRYFLQID 124
Query: 592 LNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELKLKCQTNRQ 650
++ +L + +A+ +D + T+ + +S + +PWWQ + R
Sbjct: 125 IDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERES-------TPWWQANLANVKNWRA 176
|
| >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.1 bits (152), Expect = 6e-12
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 22/168 (13%)
Query: 491 QASRLILEAKAPLVIIGKGA-AYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS 549
+A+ LI AK P++ +G G ++ L + +P T G G P +
Sbjct: 2 KAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLD 61
Query: 550 AARTHALQNADLVLLLGARLNWILHFG---------------RAPRFKSNVKIIQVDLNA 594
H A+L + + + R + II +++
Sbjct: 62 MLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSP 121
Query: 595 EELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQELK 642
+ ++ VQ +A++ D + ++ + + S W+ ++
Sbjct: 122 KNINKVVQTQIAVEGDATTNLGKMMSKI------FPVKERSEWFAQIN 163
|
| >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Score = 55.0 bits (131), Expect = 3e-09
Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAE-----TELLSFVNSFNLPFLPTPMGKG 538
P ++ A L+ +K P++ G G ++ + V + F
Sbjct: 6 PAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEWDFE 65
Query: 539 VVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELH 598
+ + + AD VL G+ + F++ IQ+D++ L
Sbjct: 66 ALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVE---GTFRNVDNFIQIDIDPAMLG 122
Query: 599 NSVQAAVAIQSDVRLTVQQLKQML-SHTQRNWSFSAT---SPWWQELK 642
A VAI D L + ++ + + + W + + W + +
Sbjct: 123 KRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYIN 170
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Score = 46.4 bits (109), Expect = 5e-06
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
+G +G + A A+ P +R + + GD +F + E+ +VR +L
Sbjct: 41 GARVEYEMQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLTAQEVAQMVRLKL 96
Query: 228 PVILVIVNNN--GIYGGFDEATYAWLDIIKKSNMSEDYD 264
PVI+ ++NN I + Y + + + E ++
Sbjct: 97 PVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFN 135
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (102), Expect = 3e-05
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 168 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRL 227
+ + +G++G G L AA P KRV+ GD + + E+ T++R+ L
Sbjct: 43 NTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGL 102
Query: 228 PVILVIVNNNG 238
L ++NN+G
Sbjct: 103 KPYLFVLNNDG 113
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 159 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 218
R ++ PR RLD+GT+G MG+G+G GK V+ V+GDSAFGFSGME
Sbjct: 38 TRMIVDMLKPRKRLDSGTWGVMGIGMG-----YCVAAAAVTGKPVIAVEGDSAFGFSGME 92
Query: 219 LETLVRYRLPVILVIVNNNGIYGGFDEATYAW 250
LET+ RY LPV ++I+NN GIY G +
Sbjct: 93 LETICRYNLPVTVIIMNNGGIYKGNEADPQPG 124
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Score = 37.2 bits (85), Expect = 0.004
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1003 RYEKMMAVFGHDGYLCTTVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050
RY+ MM FG GY+ T ++K A+++ + + +P LIN +I+P A
Sbjct: 135 RYDMMMEAFGGKGYVANTPAELKAALEEAVASG-KPCLINAMIDPDAG 181
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 39.4 bits (91), Expect = 0.001
Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 37/179 (20%)
Query: 186 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245
F L AA+ + P VV + GD +F + EL T+ LPV ++++NN +
Sbjct: 56 FGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLG----- 110
Query: 246 ATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGI 305
+ Y + + A + + GI
Sbjct: 111 --------MVMQWEDRFYKANRAHTFLGDPAQ-----------EDEIFPNMLLFAAACGI 151
Query: 306 HYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGS 364
+ + +AI + PG L+ + Q + PM+ GG+
Sbjct: 152 PAARVTKKAD---LREAIQTMLDTPGPYLLDV----------ICPHQEHVLPMIPSGGT 197
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 100.0 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 100.0 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 100.0 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 100.0 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 100.0 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 100.0 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 100.0 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 100.0 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 100.0 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 100.0 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 100.0 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 100.0 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 100.0 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 100.0 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 100.0 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 100.0 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 100.0 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 100.0 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.97 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.97 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.97 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.96 | |
| d2ji7a1 | 175 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.89 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.89 | |
| d2ez9a1 | 183 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.88 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.88 | |
| d2djia1 | 177 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.87 | |
| d1ybha1 | 179 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.87 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.86 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.86 | |
| d1ozha1 | 179 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.86 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.86 | |
| d2ihta1 | 177 | Carboxyethylarginine synthase {Streptomyces clavul | 99.86 | |
| d1t9ba1 | 171 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.86 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.85 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.85 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.84 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.84 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.8 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.78 | |
| d1q6za1 | 160 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.78 | |
| d1pvda1 | 179 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.77 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.76 | |
| d1ovma1 | 161 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.75 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.74 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.73 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.71 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.67 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.67 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.65 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.62 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.59 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.58 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.57 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.53 | |
| d1ytla1 | 158 | Acetyl-CoA decarbonylase/synthase complex epsilon | 99.39 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 97.68 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 97.44 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 97.32 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 97.28 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 97.22 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 97.18 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 97.17 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 97.12 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 97.08 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 96.79 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 96.78 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 96.72 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 96.68 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 96.64 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 96.6 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 96.21 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 96.17 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 95.93 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 95.91 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 95.89 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 95.82 | |
| d1efva2 | 124 | C-terminal domain of the electron transfer flavopr | 95.47 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 94.99 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 94.51 | |
| d3clsd2 | 123 | C-terminal domain of the electron transfer flavopr | 94.19 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 93.72 | |
| d1j8fa_ | 323 | Sirt2 histone deacetylase {Human (Homo sapiens) [T | 93.15 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 92.82 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 90.72 | |
| d1pnoa_ | 180 | Transhydrogenase domain III (dIII) {Rhodospirillum | 90.16 | |
| d1d4oa_ | 177 | Transhydrogenase domain III (dIII) {Cow (Bos tauru | 89.84 | |
| d1s5pa_ | 235 | NAD-dependent deacetylase CobB {Escherichia coli [ | 89.25 | |
| d2b4ya1 | 267 | NAD-dependent deacetylase sirtuin-5 {Human (Homo s | 88.36 | |
| d1yc5a1 | 245 | NAD-dependent deacetylase NpdA {Thermotoga maritim | 87.71 | |
| d1ma3a_ | 252 | AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog | 87.7 | |
| d1m2ka_ | 249 | AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo | 87.54 | |
| d1q1aa_ | 289 | Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 86.06 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 84.83 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 83.83 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 81.16 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 80.48 |
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=100.00 E-value=2.3e-38 Score=323.89 Aligned_cols=169 Identities=26% Similarity=0.415 Sum_probs=162.0
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhh--cCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ--QEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~--~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
+|+++++|++.|+++||+++||+||+.+.+|++++. +.+|++|.+|||++|+|||+||+|+||||++|++|+|||++|
T Consensus 2 ~m~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~~i~~i~~r~E~~A~~~A~gyar~tgk~gv~~~t~GpG~~N 81 (174)
T d2ez9a2 2 NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTH 81 (174)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CchHHHHHHHHHHHCCCCEEEEECCHhHHHHHHHHHhcCCCcEEEEecccchhHHHHHHHHhhcCceeEEeecccccccc
Confidence 578999999999999999999999999999999994 357999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++|+++|+.+++|||+|+|+.+....+++.+|++||.++++++|||+.++.+++++++.+++|++.|.+ +||||||+|
T Consensus 82 ~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~i~~A~~~A~~-~pGPv~l~i 160 (174)
T d2ez9a2 82 LMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQI 160 (174)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCHHHHTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEE
T ss_pred hhhhHHHHHhcCccceeeeccccccccCccccccchhhhhhccccccccccccHHHHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 569999999
Q ss_pred Chhhhhhccccc
Q psy14416 424 PANLLAQRINQS 435 (1065)
Q Consensus 424 P~Dv~~~~~~~~ 435 (1065)
|.|++.++++.+
T Consensus 161 P~Dv~~~~i~~~ 172 (174)
T d2ez9a2 161 PVDLPWQQIPAE 172 (174)
T ss_dssp ETTGGGSEEETT
T ss_pred CcccccCcCCcC
Confidence 999999988653
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=4.6e-38 Score=323.66 Aligned_cols=171 Identities=26% Similarity=0.443 Sum_probs=160.6
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
.++++++|++.|+++||+++||+||+.+.+|.+++.+.+|++|.++||++|+|||+||+|+||||++|++|+|||++|++
T Consensus 4 ~~~G~d~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~ 83 (181)
T d1ozha2 4 WAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI 83 (181)
T ss_dssp ESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred cccHHHHHHHHHHHCCCCEEEEeCcHhHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhcCCccceeeccchhhhhhh
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecCh
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPA 425 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~ 425 (1065)
+||++|+.+++|||+|+|+.+....+.+.+|++||.+++++++||+.++.+++++++.+++|++.|+++|+|||||+||.
T Consensus 84 ~gi~~A~~~~~Pvl~isg~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (181)
T d1ozha2 84 TGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQ 163 (181)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hhHHHHhhcCCceeeeecccchhhccccccccccccccccccchheeccCchhHHHHHHHHHHHHHhhCCCccEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccc
Q psy14416 426 NLLAQRINQSA 436 (1065)
Q Consensus 426 Dv~~~~~~~~~ 436 (1065)
|++.++++.+.
T Consensus 164 Dv~~~~~~~~~ 174 (181)
T d1ozha2 164 DVVDGPVSGKV 174 (181)
T ss_dssp HHHHSCEEECC
T ss_pred HHhcCcCCCCC
Confidence 99999887543
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-37 Score=316.39 Aligned_cols=170 Identities=26% Similarity=0.431 Sum_probs=164.2
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..|+++++|++.|+++||+++||+||+.+.++.+++.+ .++++|.++||++|+|||+||+|+||||++|++|+|||++|
T Consensus 2 ~~mtg~~~l~~~L~~~Gi~~vFgipG~~~~~l~~al~~~~~~~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 81 (175)
T d1t9ba2 2 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 81 (175)
T ss_dssp TTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHT
T ss_pred CcEEHHHHHHHHHHHCCCCEEEEcCChhHHHHHHHHhhcccceEEEecCchhHHHHHHHHHHHhCCceEEEEecCcHHHH
Confidence 46899999999999999999999999999999999954 57999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++|+++|+.+++|||+|+|+.+....+++.+|++||.+++++++||+.++++++++.+.+++|++.|.++|+|||||+|
T Consensus 82 ~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 161 (175)
T d1t9ba2 82 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDL 161 (175)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCCChhhcCCCccccccHhHhcccceeeeEecCCHHHHHHHHHHHHHHHhcCCCccEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhcccc
Q psy14416 424 PANLLAQRINQ 434 (1065)
Q Consensus 424 P~Dv~~~~~~~ 434 (1065)
|.|++.++++.
T Consensus 162 P~Dv~~~~~~~ 172 (175)
T d1t9ba2 162 PKDVTAAILRN 172 (175)
T ss_dssp EHHHHHSBCCS
T ss_pred ChhhhhccccC
Confidence 99999887653
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=100.00 E-value=2.5e-37 Score=321.88 Aligned_cols=169 Identities=30% Similarity=0.478 Sum_probs=163.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcC-CceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 343 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N 343 (1065)
..++++++|++.|+++||+++||+||+.+.+|.+++.++ +++++.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 10 ~~~~Gad~i~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N 89 (195)
T d1ybha2 10 QPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATN 89 (195)
T ss_dssp CCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHCCCCEEEEcCCccHHHHHHHHhhhcceeecccccHHHHHHHHHHHHHHHCCCeEEEEecChHHHH
Confidence 468999999999999999999999999999999999664 5999999999999999999999999999999999999999
Q ss_pred cccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 344 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 344 ~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+++|+++|+.+++|||+|+|+.+....+++.+|++||.+++++++||+.++.+++++++.+++|++.|.++|+|||||+|
T Consensus 90 ~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~A~~~a~~~r~GPV~l~i 169 (195)
T d1ybha2 90 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDV 169 (195)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCCcHHHhccCcccccchhhhhcccccchhhcchHhhcchHHHHHHHHHhcCCCCcEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhccc
Q psy14416 424 PANLLAQRIN 433 (1065)
Q Consensus 424 P~Dv~~~~~~ 433 (1065)
|.|++.++..
T Consensus 170 P~Dv~~~~~~ 179 (195)
T d1ybha2 170 PKDIQQQLAI 179 (195)
T ss_dssp EHHHHHCEEC
T ss_pred ChHHhhCccC
Confidence 9999988764
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=100.00 E-value=1.5e-37 Score=320.41 Aligned_cols=171 Identities=21% Similarity=0.357 Sum_probs=163.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhh--cCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccc
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ--QEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 342 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~--~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~ 342 (1065)
.+++++++|++.|+++||+++||+||+.+.+|.+++. +.+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~i~~~~~i~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~r~E~~A~~~A~gyar~tg~~gv~~~t~GpG~~ 81 (184)
T d2djia2 2 NKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGAS 81 (184)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCEEEEECTTHHHH
T ss_pred CceeHHHHHHHHHHHCCCCEEEEECChhHHHHHHHHHhccCCcEEEEecCCcchHHHHHhhhhcccCcceeecccccccc
Confidence 3679999999999999999999999999999999984 35799999999999999999999999999999999999999
Q ss_pred ccccccccccccCcceEeecCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEe
Q psy14416 343 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLD 422 (1065)
Q Consensus 343 N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~ 422 (1065)
|+++|+++|+.+++|||+|+|+++....+.+.+|++||.++|+++|||+.++++++++++.+++|++.|+++| |||||+
T Consensus 82 n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~~~~A~~~a~~~r-GPv~i~ 160 (184)
T d2djia2 82 HLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLE 160 (184)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEESCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred chhHhHHHHHHhCccceeecccchhhHhhcCcccccccccchhhhcceeeccccchhhHHHHHHHHHHHhCCC-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 999999
Q ss_pred cChhhhhhcccccc
Q psy14416 423 FPANLLAQRINQSA 436 (1065)
Q Consensus 423 iP~Dv~~~~~~~~~ 436 (1065)
||.|++.++++.+.
T Consensus 161 iP~Dv~~~~v~~~~ 174 (184)
T d2djia2 161 VPGDFAKVEIDNDQ 174 (184)
T ss_dssp EETTGGGCEEEGGG
T ss_pred eCchhhhCcCCCcc
Confidence 99999999887543
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=3e-37 Score=317.26 Aligned_cols=166 Identities=21% Similarity=0.343 Sum_probs=159.4
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 347 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a 347 (1065)
++++++++.|+++||+++||+||+.+.++++++.+ ++++|.+|||++|+|||+||+|+||||++|++|+|||++|+++|
T Consensus 2 ~v~~~i~e~L~~~GV~~vFgipG~~~~~~~~al~~-~i~~i~~rhE~~A~~mA~gyar~tgk~~v~~~~~GpG~~n~~~g 80 (180)
T d1q6za2 2 SVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGA 80 (180)
T ss_dssp BHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCCT-TCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHCCCCEEEEECcHhHHHHHHHHHh-CCeEEEEccchhHHHHHHHHhhhccCcceEEeccccccccccce
Confidence 68999999999999999999999999999999864 79999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeecCCCccCCCCCCC-CCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 348 MANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 348 v~eA~~~~vPLlvItg~~p~~~~g~ga-~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|++|+.+++|||+|+|+.+....++++ +|++||.++++++|||+.++.+++++++.+++|++.|.++|+|||||+||.|
T Consensus 81 l~~A~~~~~Pvlvi~g~~~~~~~g~~~~~q~~D~~~~~~~~tK~~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D 160 (180)
T d1q6za2 81 LSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 160 (180)
T ss_dssp HHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred eHhhhhcccceeeeccccccccccccccchhhheeecccccccccccCCCHHHHHHHHHHHHHHHhcCCCccEEEEcChh
Confidence 999999999999999999998888775 7999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccc
Q psy14416 427 LLAQRINQ 434 (1065)
Q Consensus 427 v~~~~~~~ 434 (1065)
++.++++.
T Consensus 161 ~~~~~~~p 168 (180)
T d1q6za2 161 DWDKDADP 168 (180)
T ss_dssp GTTSBCCG
T ss_pred HhcCcCCC
Confidence 99887753
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=100.00 E-value=1.1e-36 Score=315.70 Aligned_cols=169 Identities=40% Similarity=0.700 Sum_probs=161.2
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
..++++.|++.|+++||+++||+||+.+.++++++.++++++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 3 ~~~G~~~i~~~L~~~GV~~vFg~pG~~~~~~~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 82 (188)
T d2ji7a2 3 LTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGV 82 (188)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHH
T ss_pred cccHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhCCCEEEEecccchhhhHHHHHHhhhcccceeeccccccccccc
Confidence 35799999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cccccccccCcceEeecCCCccCC--CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEec
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDH--EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDF 423 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~--~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~i 423 (1065)
+||++|+.+++|||+|+|+.+.+. .+++.+|++||.++|+++|||+.++.+++++++.+++|++.|+++|+|||||+|
T Consensus 83 ~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l~i 162 (188)
T d2ji7a2 83 TSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDL 162 (188)
T ss_dssp HHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred hhHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCcchhhhccccccccHHHHHHHHHHHhCCCCceEEEEc
Confidence 999999999999999999988764 346889999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhcccc
Q psy14416 424 PANLLAQRINQ 434 (1065)
Q Consensus 424 P~Dv~~~~~~~ 434 (1065)
|.|++.++++.
T Consensus 163 P~dv~~~~~~~ 173 (188)
T d2ji7a2 163 PAKLFGQTISV 173 (188)
T ss_dssp EHHHHTCEEEH
T ss_pred ChhHhhCccCc
Confidence 99999888753
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=2.7e-36 Score=311.99 Aligned_cols=166 Identities=24% Similarity=0.401 Sum_probs=156.1
Q ss_pred cHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccccc
Q psy14416 268 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 347 (1065)
Q Consensus 268 ~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~~a 347 (1065)
|++++|++.|+++||+++||+||+.+.+++++ ..++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 2 T~a~~lv~~L~~~Gv~~vFgipG~~~~~~~~~-~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~g 80 (186)
T d2ihta2 2 TAAHALLSRLRDHGVGKVFGVVGREAASILFD-EVEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTG 80 (186)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCCGGGGTCCSC-SSTTCEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEECChhHHHHHHH-HhcCCEEEEEccchhhHHHHHHHhhccCCcceeeccccccccchhhh
Confidence 68999999999999999999999999998765 34589999999999999999999999999999999999999999999
Q ss_pred cccccccCcceEeecCCCccCC-CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCCEEEEecChh
Q psy14416 348 MANAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 348 v~eA~~~~vPLlvItg~~p~~~-~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~GPV~L~iP~D 426 (1065)
|++|+.+++|||+|+|+.+... .+.+.+|++||.++|+++|||+.++.+++++++.+++|++.|+++|+|||||+||.|
T Consensus 81 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~D 160 (186)
T d2ihta2 81 IATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 160 (186)
T ss_dssp HHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred hhHHHHhhccceeeeccCcchhccccccccccccccccCCceeeccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHh
Confidence 9999999999999999998754 466789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccc
Q psy14416 427 LLAQRINQ 434 (1065)
Q Consensus 427 v~~~~~~~ 434 (1065)
++.++.+.
T Consensus 161 i~~~~~~~ 168 (186)
T d2ihta2 161 LLGSSEGI 168 (186)
T ss_dssp HHTCCTTC
T ss_pred HhhCcccc
Confidence 99877653
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=100.00 E-value=1.4e-35 Score=303.01 Aligned_cols=162 Identities=25% Similarity=0.399 Sum_probs=153.1
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh--CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~--~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
.|+++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~m~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~~i~~i~~r~E~~A~~~A~gyar~tgk~gv~~~t~GpG~~N 81 (174)
T d2ez9a2 2 NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTH 81 (174)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CchHHHHHHHHHHHCCCCEEEEECCHhHHHHHHHHHhcCCCcEEEEecccchhHHHHHHHHhhcCceeEEeecccccccc
Confidence 5899999999999999999999999999999999953 47999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCccccccc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLN 165 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~~ 165 (1065)
+++||++|+.+++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++|++.|.+ +|||+++
T Consensus 82 ~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~i~~A~~~A~~-~pGPv~l-- 158 (174)
T d2ez9a2 82 LMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVV-- 158 (174)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCHHHHTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEE--
T ss_pred hhhhHHHHHhcCccceeeeccccccccCccccccchhhhhhccccccccccccHHHHHHHHHHHHHHHhC-CCCCEEE--
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 6799997
Q ss_pred CCCcccc
Q psy14416 166 NLPRHRL 172 (1065)
Q Consensus 166 ~~p~~~l 172 (1065)
..|.+.+
T Consensus 159 ~iP~Dv~ 165 (174)
T d2ez9a2 159 QIPVDLP 165 (174)
T ss_dssp EEETTGG
T ss_pred EeCcccc
Confidence 3454443
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=2.9e-35 Score=302.65 Aligned_cols=157 Identities=28% Similarity=0.437 Sum_probs=148.3
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 87 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l 87 (1065)
.||++|+|++.|+++||++|||+||+.+++|+++|.+.+|++|.+|||++|+|||+||+|+|||++||++|+|||++|++
T Consensus 4 ~~~G~d~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~ 83 (181)
T d1ozha2 4 WAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI 83 (181)
T ss_dssp ESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred cccHHHHHHHHHHHCCCCEEEEeCcHhHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhcCCccceeeccchhhhhhh
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 88 GGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 88 ~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
+||++|+.+++|||+|+|+.++...+++.+|++||.+++++++||++++++++++++.+++|++.|+++||||+++.
T Consensus 84 ~gi~~A~~~~~Pvl~isg~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 160 (181)
T d1ozha2 84 TGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVS 160 (181)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred hhHHHHhhcCCceeeeecccchhhccccccccccccccccccchheeccCchhHHHHHHHHHHHHHhhCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999984
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=100.00 E-value=2.7e-35 Score=303.46 Aligned_cols=157 Identities=21% Similarity=0.336 Sum_probs=151.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHH--hCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQ--QEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~--~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
.+||++|+|++.|+++||++|||+||+.+++|+++|. +.+|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~i~~~~~i~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~r~E~~A~~~A~gyar~tg~~gv~~~t~GpG~~ 81 (184)
T d2djia2 2 NKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGAS 81 (184)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCEEEEECTTHHHH
T ss_pred CceeHHHHHHHHHHHCCCCEEEEECChhHHHHHHHHHhccCCcEEEEecCCcchHHHHHhhhhcccCcceeecccccccc
Confidence 3689999999999999999999999999999999994 45799999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
|+++||++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++++++++++.+++|++.|+++| ||+++.
T Consensus 82 n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~~~~A~~~a~~~r-GPv~i~ 160 (184)
T d2djia2 82 HLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLE 160 (184)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEESCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred chhHhHHHHHHhCccceeecccchhhHhhcCcccccccccchhhhcceeeccccchhhHHHHHHHHHHHhCCC-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 998873
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=100.00 E-value=1.3e-34 Score=301.21 Aligned_cols=159 Identities=31% Similarity=0.494 Sum_probs=153.8
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLL 84 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~ 84 (1065)
...||++|+|++.|+++||++|||+||+.+++|+++|.+. +++++.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 9 ~~~~~Gad~i~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 88 (195)
T d1ybha2 9 DQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGAT 88 (195)
T ss_dssp TCCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHH
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEcCCccHHHHHHHHhhhcceeecccccHHHHHHHHHHHHHHHCCCeEEEEecChHHH
Confidence 3568999999999999999999999999999999999765 599999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 85 HTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 85 N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
|+++||++|+.+++|||+|+|+.+....+++.+|+.|+.+++++++||+.++.+++++++.+++|++.|.++||||+++.
T Consensus 89 N~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~A~~~a~~~r~GPV~l~ 168 (195)
T d1ybha2 89 NLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVD 168 (195)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcHHHhccCcccccchhhhhcccccchhhcchHhhcchHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-34 Score=295.85 Aligned_cols=158 Identities=27% Similarity=0.423 Sum_probs=153.7
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
+.||++|+|++.|+++||++|||+||+++.+|+++|.+ .++++|.+|||++|++||+||+|+||||+||++|+|||++|
T Consensus 2 ~~mtg~~~l~~~L~~~Gi~~vFgipG~~~~~l~~al~~~~~~~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 81 (175)
T d1t9ba2 2 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 81 (175)
T ss_dssp TTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHT
T ss_pred CcEEHHHHHHHHHHHCCCCEEEEcCChhHHHHHHHHhhcccceEEEecCchhHHHHHHHHHHHhCCceEEEEecCcHHHH
Confidence 67999999999999999999999999999999999954 57999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLL 164 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~ 164 (1065)
+++||++|+.+++|||+|+|+.+....+++.+|++||.+++++++||+.++++++++++.+++|++.|.++|+||+++.
T Consensus 82 ~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~ 160 (175)
T d1t9ba2 82 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVD 160 (175)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCCChhhcCCCccccccHhHhcccceeeeEecCCHHHHHHHHHHHHHHHhcCCCccEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=100.00 E-value=1.1e-34 Score=300.32 Aligned_cols=164 Identities=38% Similarity=0.664 Sum_probs=154.1
Q ss_pred cccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhh
Q psy14416 6 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLH 85 (1065)
Q Consensus 6 ~~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N 85 (1065)
|+.++++|+|++.|+++||+++||+||+.+.++++++.+.++++|.+|||++|+|||+||+|+|||++||++|+|||++|
T Consensus 1 ~~~~~G~~~i~~~L~~~GV~~vFg~pG~~~~~~~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 80 (188)
T d2ji7a2 1 VELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLN 80 (188)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred CccccHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhCCCEEEEecccchhhhHHHHHHhhhcccceeeccccccccc
Confidence 45568999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCcEEEEecCCCCCcC--ccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCccccc
Q psy14416 86 TFGGMANAQINCWPMLVIGGSCAQDHE--GIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLL 163 (1065)
Q Consensus 86 ~l~gla~A~~~~~Pll~Isg~~~~~~~--g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l 163 (1065)
+++||++|+.+++|||+|+|+.++... .++.+|++||.++++++|||++++++++++++.+++|++.|+++||||+++
T Consensus 81 ~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l 160 (188)
T d2ji7a2 81 GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYV 160 (188)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEE
T ss_pred cchhHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCcchhhhccccccccHHHHHHHHHHHhCCCCceEEE
Confidence 999999999999999999999887643 467899999999999999999999999999999999999999999999998
Q ss_pred ccCCCccc
Q psy14416 164 LNNLPRHR 171 (1065)
Q Consensus 164 ~~~~p~~~ 171 (1065)
. .|.+.
T Consensus 161 ~--iP~dv 166 (188)
T d2ji7a2 161 D--LPAKL 166 (188)
T ss_dssp E--EEHHH
T ss_pred E--cChhH
Confidence 3 45444
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=8.3e-35 Score=298.96 Aligned_cols=160 Identities=21% Similarity=0.346 Sum_probs=151.3
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHH
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 89 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~g 89 (1065)
|+++++++.|+++||++|||+||+.+++|+++|.+ ++++|.+|||++|++||+||+|+||||++|++|+|||++|+++|
T Consensus 2 ~v~~~i~e~L~~~GV~~vFgipG~~~~~~~~al~~-~i~~i~~rhE~~A~~mA~gyar~tgk~~v~~~~~GpG~~n~~~g 80 (180)
T d1q6za2 2 SVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGA 80 (180)
T ss_dssp BHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCCT-TCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHCCCCEEEEECcHhHHHHHHHHHh-CCeEEEEccchhHHHHHHHHhhhccCcceEEeccccccccccce
Confidence 78999999999999999999999999999999964 79999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCcEEEEecCCCCCcCccCC-CcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccccCCC
Q psy14416 90 MANAQINCWPMLVIGGSCAQDHEGIGG-FQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168 (1065)
Q Consensus 90 la~A~~~~~Pll~Isg~~~~~~~g~~~-~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~~~~p 168 (1065)
|++|+.+++|||+|+|+.+....+++. +|++||.++++++|||++++++++++++.+++|++.|.++|+||+++ ..|
T Consensus 81 l~~A~~~~~Pvlvi~g~~~~~~~g~~~~~q~~D~~~~~~~~tK~~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l--~iP 158 (180)
T d1q6za2 81 LSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYL--SVP 158 (180)
T ss_dssp HHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEE--EEE
T ss_pred eHhhhhcccceeeeccccccccccccccchhhheeecccccccccccCCCHHHHHHHHHHHHHHHhcCCCccEEE--EcC
Confidence 999999999999999999988888765 89999999999999999999999999999999999999999999987 345
Q ss_pred cccc
Q psy14416 169 RHRL 172 (1065)
Q Consensus 169 ~~~l 172 (1065)
.+.+
T Consensus 159 ~D~~ 162 (180)
T d1q6za2 159 YDDW 162 (180)
T ss_dssp GGGT
T ss_pred hhHh
Confidence 4443
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=100.00 E-value=7.5e-34 Score=293.56 Aligned_cols=166 Identities=15% Similarity=0.191 Sum_probs=151.3
Q ss_pred ccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEeccccccccc
Q psy14416 267 LSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTF 345 (1065)
Q Consensus 267 ~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~~ 345 (1065)
+|++++|++.|+++||+++||+||+.+.+|++++.+ .+|++|.++||++|+|||+||+|+||||++| +|+|||++|++
T Consensus 2 ~Tv~~~l~~~L~~~Gv~~vFgvpG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~-~t~GpG~~N~~ 80 (186)
T d1zpda2 2 YTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAV-VTYSVGALSAF 80 (186)
T ss_dssp CBHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEE-ECTTTTHHHHH
T ss_pred eeHHHHHHHHHHHCCCCEEEEeCChhHHHHHHHHHHcCCceEeeeccccceehhhhhhhhccccceeE-eeccccchhhh
Confidence 589999999999999999999999999999999865 5799999999999999999999999998776 58999999999
Q ss_pred cccccccccCcceEeecCCCccCCCCCCCC--------CccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCCC
Q psy14416 346 GGMANAQINCWPMLVIGGSCAQDHEGIGGF--------QECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPG 417 (1065)
Q Consensus 346 ~av~eA~~~~vPLlvItg~~p~~~~g~ga~--------Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~G 417 (1065)
+|+++|+.+++|||+|+|+.+....+.+.. +..||.++++++|||+.++.+++++++.+++|++.|.++| |
T Consensus 81 ~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-~ 159 (186)
T d1zpda2 81 DAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK-K 159 (186)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHGGGCSCEEEECSGGGHHHHHHHHHHHHHHHT-C
T ss_pred hhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhccCCceeeeeEcCCHHHHHHHHHHHHHHHhhCC-C
Confidence 999999999999999999998876655432 2235889999999999999999999999999999999876 7
Q ss_pred EEEEecChhhhhhcccc
Q psy14416 418 VSYLDFPANLLAQRINQ 434 (1065)
Q Consensus 418 PV~L~iP~Dv~~~~~~~ 434 (1065)
||||+||.|++.++++.
T Consensus 160 PV~l~iP~Dv~~~~~~~ 176 (186)
T d1zpda2 160 PVYLEIACNIASMPCAA 176 (186)
T ss_dssp CEEEEEETTSTTSBCCE
T ss_pred CEEEECCcchhhCcCCC
Confidence 99999999999888754
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-34 Score=293.30 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=147.1
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.|+++++|++.|+++||+++||+||+.+.+|.+++.+ ++|++|.++||++|+|||+||+|.|++| +|++|+|||++|+
T Consensus 2 emt~~~~i~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t~~~-~v~~t~GpG~~N~ 80 (180)
T d1pvda2 2 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS-CIITTFGVGELSA 80 (180)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHGGGGSTTCEECCCSCHHHHHHHHHHHHHHHSCE-EEEEETTHHHHHH
T ss_pred ccCHHHHHHHHHHHCCCCEEEEeCCccHHHHHHHHHHhcceEEeeecccchhhHHHHHHhhccCCc-eeeeccccccchh
Confidence 5789999999999999999999999999999999966 4799999999999999999999999886 5678999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCCc--------cChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~--------idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++|+++|+.+++|||+|+|+.+....+++.+|+ .++.++++++|||+.++++++++++.+++|++.|.+ +|
T Consensus 81 ~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~ 159 (180)
T d1pvda2 81 LNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYV-TQ 159 (180)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHH-HT
T ss_pred hHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999887766554322 235689999999999999999999999999999986 56
Q ss_pred CEEEEecChhhhhhcccc
Q psy14416 417 GVSYLDFPANLLAQRINQ 434 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~~ 434 (1065)
|||||+||.|++..+++.
T Consensus 160 gPv~i~iP~dv~~~~vp~ 177 (180)
T d1pvda2 160 RPVYLGLPANLVDLNVPA 177 (180)
T ss_dssp SCEEEEEETTTTTSEEEG
T ss_pred CCEEEECCcccccCcCCc
Confidence 999999999999888764
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=1.1e-33 Score=292.35 Aligned_cols=159 Identities=25% Similarity=0.381 Sum_probs=147.7
Q ss_pred cHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhCCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhhhHH
Q psy14416 10 SANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHTFGG 89 (1065)
Q Consensus 10 t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~l~g 89 (1065)
|++|+|++.|+++||++|||+||+.+.+++++. ..+|++|.+|||++|+|||+||+|+|||++||++|+|||++|+++|
T Consensus 2 T~a~~lv~~L~~~Gv~~vFgipG~~~~~~~~~~-~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~g 80 (186)
T d2ihta2 2 TAAHALLSRLRDHGVGKVFGVVGREAASILFDE-VEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTG 80 (186)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCS-STTCEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEECChhHHHHHHHH-hcCCEEEEEccchhhHHHHHHHhhccCCcceeeccccccccchhhh
Confidence 899999999999999999999999999988663 3589999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCcEEEEecCCCCCc-CccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCCcccccccCCC
Q psy14416 90 MANAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKPGRSLLLNNLP 168 (1065)
Q Consensus 90 la~A~~~~~Pll~Isg~~~~~~-~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rpGP~~l~~~~p 168 (1065)
|++|+.|++|||+|+|+.+... .+.+.+|+.||.+++++++||++++++++++++.+++|++.|+++||||+++. .|
T Consensus 81 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~--iP 158 (186)
T d2ihta2 81 IATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFIS--LP 158 (186)
T ss_dssp HHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEE--EE
T ss_pred hhHHHHhhccceeeeccCcchhccccccccccccccccCCceeeccccCCchhhhhHHHHHHHHHhcCCCeeEEEE--eC
Confidence 9999999999999999998754 46678999999999999999999999999999999999999999999999874 44
Q ss_pred ccc
Q psy14416 169 RHR 171 (1065)
Q Consensus 169 ~~~ 171 (1065)
.+.
T Consensus 159 ~Di 161 (186)
T d2ihta2 159 VDL 161 (186)
T ss_dssp HHH
T ss_pred HhH
Confidence 443
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.97 E-value=1.5e-31 Score=276.17 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=143.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
++|++|+|++.|+++||++|||+||+.+++|+++|.+ .+|++|.+|||++|+|||+||+|+|||+++|+ |+|||++|+
T Consensus 1 s~Tv~~~l~~~L~~~Gv~~vFgvpG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~-t~GpG~~N~ 79 (186)
T d1zpda2 1 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVV-TYSVGALSA 79 (186)
T ss_dssp CCBHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEE-CTTTTHHHH
T ss_pred CeeHHHHHHHHHHHCCCCEEEEeCChhHHHHHHHHHHcCCceEeeeccccceehhhhhhhhccccceeEe-eccccchhh
Confidence 4799999999999999999999999999999999875 47999999999999999999999999998765 899999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCC-----Ccc---cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGG-----FQE---CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~-----~Q~---~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+.++...+++. +|+ .||.++++++|||+.++.+++++++.+++|++.|.++|
T Consensus 80 ~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~- 158 (186)
T d1zpda2 80 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 158 (186)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHGGGCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred hhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhccCCceeeeeEcCCHHHHHHHHHHHHHHHhhCC-
Confidence 999999999999999999999887766543 222 24789999999999999999999999999999999986
Q ss_pred cccccccCCCccc
Q psy14416 159 GRSLLLNNLPRHR 171 (1065)
Q Consensus 159 GP~~l~~~~p~~~ 171 (1065)
||+++. .|.+.
T Consensus 159 ~PV~l~--iP~Dv 169 (186)
T d1zpda2 159 KPVYLE--IACNI 169 (186)
T ss_dssp CCEEEE--EETTS
T ss_pred CCEEEE--CCcch
Confidence 799874 45444
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.97 E-value=7.1e-32 Score=277.07 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=143.3
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEecccccccc
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 344 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~tsGpG~~N~ 344 (1065)
.++.+++|++.|+++||+++||+||+.+.++++++.+ .+|++|.++||++|+|||+||+|.+|+|+| ++|+|||++|+
T Consensus 2 p~tvad~iv~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~~A~gyar~t~~~~v-~~t~GpG~~n~ 80 (178)
T d1ovma2 2 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAAL-LTTFGVGELSA 80 (178)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEE-EEETTHHHHHT
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCChhHHHHHHHHHhCCCeEEEEeccchhhHHHHHHHHhcCCCceE-Eeecccccccc
Confidence 4689999999999999999999999999999999965 689999999999999999999999999875 68999999999
Q ss_pred ccccccccccCcceEeecCCCccCCCCCCCCC--------ccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 345 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQ--------ECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 345 ~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q--------~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
++||++|+.+++|||+|+|+.+....+++.+| .-|+..++++++||+..+++++.+.+..+.+++.+.. +
T Consensus 81 ~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~~~--~ 158 (178)
T d1ovma2 81 MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE--R 158 (178)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH--T
T ss_pred chhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEEeCcHHHHHHHHHHHHHHHhC--C
Confidence 99999999999999999999987654433332 2356799999999999999998888765555544443 3
Q ss_pred CEEEEecChhhhhhccc
Q psy14416 417 GVSYLDFPANLLAQRIN 433 (1065)
Q Consensus 417 GPV~L~iP~Dv~~~~~~ 433 (1065)
|||||+||.|++.++++
T Consensus 159 ~Pv~i~iP~Dv~~~~~~ 175 (178)
T d1ovma2 159 RPGYLMLPADVAKKAAT 175 (178)
T ss_dssp CCEEEEEEHHHHHSBCC
T ss_pred CCEEEEEChHHhhCccC
Confidence 79999999999988765
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3e-31 Score=272.74 Aligned_cols=161 Identities=18% Similarity=0.233 Sum_probs=138.5
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHhC-CCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQE-GIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~~-~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
+||++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+|||+||+|+|+++ +|++|+|||++|+
T Consensus 2 emt~~~~i~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t~~~-~v~~t~GpG~~N~ 80 (180)
T d1pvda2 2 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS-CIITTFGVGELSA 80 (180)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHGGGGSTTCEECCCSCHHHHHHHHHHHHHHHSCE-EEEEETTHHHHHH
T ss_pred ccCHHHHHHHHHHHCCCCEEEEeCCccHHHHHHHHHHhcceEEeeecccchhhHHHHHHhhccCCc-eeeeccccccchh
Confidence 68999999999999999999999999999999999664 799999999999999999999999875 5678999999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcc--c------chhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--C------PQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~--~------dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+.+....+++.+|+ + ++.++++++|||++++++++++++.+++|++.|.. +|
T Consensus 81 ~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~ 159 (180)
T d1pvda2 81 LNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYV-TQ 159 (180)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHH-HT
T ss_pred hHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999888776654322 1 24679999999999999999999999999999976 57
Q ss_pred cccccccCCCcccc
Q psy14416 159 GRSLLLNNLPRHRL 172 (1065)
Q Consensus 159 GP~~l~~~~p~~~l 172 (1065)
||+++ +.|.+.+
T Consensus 160 gPv~i--~iP~dv~ 171 (180)
T d1pvda2 160 RPVYL--GLPANLV 171 (180)
T ss_dssp SCEEE--EEETTTT
T ss_pred CCEEE--ECCcccc
Confidence 99987 4454443
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.96 E-value=9.3e-30 Score=261.17 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=133.6
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-CCCeEEEecChhhHHHHHHHHHHhcCCcEEEEEeCCcchhhh
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVSGPGLLHT 86 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~~~t~GPG~~N~ 86 (1065)
.+|++|+|++.|+++||++|||+||+.+.++++++.+ .+|++|.+|||++|+|||+||+|++||++| ++|+|||++|+
T Consensus 2 p~tvad~iv~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~~A~gyar~t~~~~v-~~t~GpG~~n~ 80 (178)
T d1ovma2 2 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAAL-LTTFGVGELSA 80 (178)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEE-EEETTHHHHHT
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCChhHHHHHHHHHhCCCeEEEEeccchhhHHHHHHHHhcCCCceE-Eeecccccccc
Confidence 5799999999999999999999999999999999965 589999999999999999999999999875 57899999999
Q ss_pred hHHHhhcccCCCcEEEEecCCCCCcCccCCCcc--------cchhhhcccccceeccCCCcccHHHHHHHHHHHhhcCCC
Q psy14416 87 FGGMANAQINCWPMLVIGGSCAQDHEGIGGFQE--------CPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 158 (1065)
Q Consensus 87 l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~--------~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~rp 158 (1065)
++||++|+.+++|||+|+|+.++...+++.+|+ .|+..++++++||++++++++++++..+.+++.+..++|
T Consensus 81 ~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~~~~~P 160 (178)
T d1ovma2 81 MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRP 160 (178)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHHTCC
T ss_pred chhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEEeCcHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999887665554332 256789999999999999999998876666666665554
Q ss_pred ccc
Q psy14416 159 GRS 161 (1065)
Q Consensus 159 GP~ 161 (1065)
+++
T Consensus 161 v~i 163 (178)
T d1ovma2 161 GYL 163 (178)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.89 E-value=3.1e-23 Score=211.61 Aligned_cols=168 Identities=33% Similarity=0.616 Sum_probs=148.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccHHHHhhhcCCCEE
Q psy14416 483 WPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSAARTHALQNADLV 562 (1065)
Q Consensus 483 ~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~~~~~al~~aDlV 562 (1065)
-|+++++++++++|.+||||+|++|.|+.+.++.+++++|+|++|+||+++.+++|++|++||++.+.....++++||||
T Consensus 3 ~P~~~~l~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~~~g~~~~~h~~~~~~~~~~~l~~aDli 82 (175)
T d2ji7a1 3 IPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVC 82 (175)
T ss_dssp CCCHHHHHHHHHHHHTCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTBTTBCTTCTTBCGGGHHHHHHHCSEE
T ss_pred CcCHHHHHHHHHHHHhCCCEEEEECCCccccccHHHHHHHhhhceeeeeccccccccCCCcccccccccccceeecccce
Confidence 47899999999999999999999999998788889999999999999999999999999999999998888889999999
Q ss_pred EEeCCccccccccCCCcccc-CCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCchHHHHH
Q psy14416 563 LLLGARLNWILHFGRAPRFK-SNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSPWWQEL 641 (1065)
Q Consensus 563 I~iG~~~~~~~~~g~~~~~~-~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~W~~~~ 641 (1065)
|++|+++++..+.++...+. +++++||||.|+..+++++..++.|++|+..+|++|.+.++.. ...+..|.+++
T Consensus 83 i~vG~~~~~~~~~~~~~~~~~~~~kvI~Id~d~~~i~~~~~~~l~i~~D~~~~l~~L~~~l~~~-----~~~~~~w~~~~ 157 (175)
T d2ji7a1 83 VLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGA-----PKADAEWTGAL 157 (175)
T ss_dssp EEESCCSSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHTTTC-----CCSCHHHHHHH
T ss_pred eeeeccCCcccccccccccCCccceEEEEeccchhhccccCcCceEEEcHHHHHHHHHHHhccC-----CCCCHHHHHHH
Confidence 99999999877777765554 4578999999999999999999999999999999999988631 13457899998
Q ss_pred HHHHHhhhhcccch
Q psy14416 642 KLKCQTNRQVKLPV 655 (1065)
Q Consensus 642 ~~~~~~~~~~~~~~ 655 (1065)
++..+.++....+.
T Consensus 158 ~~~~~~~~~~~~~~ 171 (175)
T d2ji7a1 158 KAKVDGNKAKLAGK 171 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 88877777665543
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.89 E-value=3.8e-24 Score=224.23 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=109.2
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++++ ||++|. |+++|| +++|||+| +|+.+|++
T Consensus 55 G~glpaai--Ga~~A~--------p~~~Vi---------------------------------~i~GDGsf-~m~~~El~ 90 (208)
T d1ybha3 55 GFGLPAAI--GASVAN--------PDAIVV---------------------------------DIDGDGSF-IMNVQELA 90 (208)
T ss_dssp TCHHHHHH--HHHHHC--------TTSCEE---------------------------------EEEEHHHH-HHTTTHHH
T ss_pred hhhhhhHH--HHHhcC--------CCCcEE---------------------------------EEccCCch-hhhhhhHH
Confidence 99999988 999998 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCccc--CCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTT--VSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIK 1025 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 1025 (1065)
|+ +|+++|+++||+||+| |+..... ....+....... ..+..+..+..||.++|++||+++++|++.+||+
T Consensus 91 Ta-----~r~~lpi~iiV~NN~~-~g~i~~~-q~~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~~~~el~ 163 (208)
T d1ybha3 91 TI-----RVENLPVKVLLLNNQH-LGMVMQW-EDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLR 163 (208)
T ss_dssp HH-----HHTTCCEEEEEEECSB-CHHHHHH-HHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBHHHHH
T ss_pred HH-----HHhCCCEEEEEEeccc-cccceeh-hhhcccccccccccccccccCCCCCCHHHhhccCCceEEEcCCHHHHH
Confidence 99 9999999999999988 3322221 112222211111 1223445667899999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1026 QAMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1026 ~~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
++|+++++. ++|+||||.|||+++..|
T Consensus 164 ~al~~a~~~-~~p~lIeV~id~~~~v~P 190 (208)
T d1ybha3 164 EAIQTMLDT-PGPYLLDVICPHQEHVLP 190 (208)
T ss_dssp HHHHHHHHS-SSCEEEEEECCTTCCCCS
T ss_pred HHHHHHHhC-CCCEEEEEEECCCCccCC
Confidence 999999987 999999999999987643
|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.88 E-value=1.6e-22 Score=207.51 Aligned_cols=163 Identities=26% Similarity=0.467 Sum_probs=138.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCccccc-------HH
Q psy14416 479 PTLPWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVS-------AA 551 (1065)
Q Consensus 479 ~~~~~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg-------~~ 551 (1065)
+..+.|+++++++++++|.+|+||+|++|.|+.+ +.++|.+|||++|+||+++.++||++|++||+++| ..
T Consensus 10 p~~p~pd~~~i~~~~~~L~~A~rPvii~G~G~~~--a~~~l~~lae~~~~Pv~tt~~~~g~~~~~hp~~~G~~G~~~~~~ 87 (183)
T d2ez9a1 10 PLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARK--AGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKP 87 (183)
T ss_dssp CCCCBCCHHHHHHHHHHHHHCSSEEEEECGGGTT--CHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc--chHHHHHHhhccceEEEeeccccccccccCccccccccccccHH
Confidence 3456789999999999999999999999999864 46789999999999999999999999999999987 24
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCC
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSF 631 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~ 631 (1065)
.+.++++|||||.+|+++++..+..+ +.+++++||||.|+..+++++.+++.|++|+..+|++|.+.++.
T Consensus 88 ~~~~i~~aDlil~vG~~l~~~~~~~~---~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~------- 157 (183)
T d2ez9a1 88 ANEALAQADVVLFVGNNYPFAEVSKA---FKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSE------- 157 (183)
T ss_dssp HHHHHHHCSEEEEESCCCTTTTTTTT---TTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCC-------
T ss_pred HHhhhhccCceEEeecccCcccceee---cccccchheeeccHHHHhhcCCCCeEEEECHHHHHHHHHHHhhh-------
Confidence 56788999999999999987654333 45678999999999999999999999999999999999999873
Q ss_pred CCCchHHHHHHHHHHhhhhccc
Q psy14416 632 SATSPWWQELKLKCQTNRQVKL 653 (1065)
Q Consensus 632 ~~~~~W~~~~~~~~~~~~~~~~ 653 (1065)
.....|+..+.+..+.|++.++
T Consensus 158 ~~~~~~~~~~~~~~~~wr~~l~ 179 (183)
T d2ez9a1 158 RESTPWWQANLANVKNWRAYLA 179 (183)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 2345676666666667766654
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.88 E-value=1.5e-23 Score=222.21 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=103.9
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++++ ||++|. |+++|| +++|||+| +|+.++|+
T Consensus 58 G~glpaAi--Ga~la~--------p~~~Vv---------------------------------~i~GDG~f-~m~~~EL~ 93 (228)
T d2ez9a3 58 GVGIPGAI--AAKLNY--------PERQVF---------------------------------NLAGDGGA-SMTMQDLA 93 (228)
T ss_dssp TCHHHHHH--HHHHHC--------TTSCEE---------------------------------EEEEHHHH-HHHGGGHH
T ss_pred cccchhhh--hhhhhh--------ccceeE---------------------------------eecCCccc-cccchhhh
Confidence 99999998 999998 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +|+++|+++||+||++ |+..... ... ...+.. .....+++||.++|++||+++++|++.+||+++
T Consensus 94 Ta-----~~~~lpi~~vV~NN~~-yg~i~~~-q~~-~~~~~~-----~~~~l~~~d~~~iA~a~G~~~~~v~~~~el~~a 160 (228)
T d2ez9a3 94 TQ-----VQYHLPVINVVFTNCQ-YGWIKDE-QED-TNQNDF-----IGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDV 160 (228)
T ss_dssp HH-----HHTTCCCEEEEEECSB-CHHHHHH-HHH-HCSSCC-----CSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHH
T ss_pred hh-----ccccCceEEEEecccc-chhhhhh-hhh-cccCCc-----ccccccCccHHhhccccccceEEeCCHHHHHHH
Confidence 99 9999999999999987 4432221 111 111111 122346789999999999999999999999999
Q ss_pred HHHH--HhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1028 MKKC--LQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1028 ~~~~--~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
|+++ +++ ++|+||||.|+++.....
T Consensus 161 l~~a~al~~-~~p~lIev~vd~d~~~P~ 187 (228)
T d2ez9a3 161 FEQAKAIAQ-HEPVLIDAVITGDRPLPA 187 (228)
T ss_dssp HHHHHHHTT-TSCEEEEEECCCCCCCCT
T ss_pred HHHHHHHcC-CCeEEEEEEECCCCcCCC
Confidence 9864 554 899999999999876544
|
| >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.87 E-value=4.3e-22 Score=203.43 Aligned_cols=160 Identities=19% Similarity=0.286 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhh
Q psy14416 483 WPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHA 555 (1065)
Q Consensus 483 ~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~a 555 (1065)
.|+++++++++++|.+||||+|++|+|+..+ .+++.+|||++|+||++|++++|++|++||+|+|. ..+++
T Consensus 5 ~P~~~~i~~~~~~l~~Ak~Pvii~G~g~~~a--~~~l~~lae~l~~Pv~~t~~~~g~ip~~hp~~~G~~g~~~~~~~~~~ 82 (177)
T d2djia1 5 APAAQDIDAAVELLNNSKRPVIYAGIGTMGH--GPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANET 82 (177)
T ss_dssp CCCHHHHHHHHHHHHTCSSEEEEECGGGTTC--HHHHHHHHHHHTCCEEECTTCGGGSCTTCTTBCCCSSSSSCHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCEEEEECcChhhH--HHHHHHhhhccceEEEecccccccccccccccccccccccChhhhhh
Confidence 4789999999999999999999999988754 46899999999999999999999999999999873 45678
Q ss_pred hcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCc
Q psy14416 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATS 635 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~ 635 (1065)
+++|||||.+|+++++....++ +.+++++||||.|+..+++++.+++.|++|+..+|++|.+.++. ....
T Consensus 83 l~~aDlvi~lG~~~~~~~~~~~---~~~~~kiI~Id~d~~~i~~~~~~d~~i~gD~~~~L~~L~~~l~~-------~~~~ 152 (177)
T d2djia1 83 ILEADTVLFAGSNFPFSEVEGT---FRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDA-------VEES 152 (177)
T ss_dssp HHHCSEEEEESCCCTTTTTTTT---TTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSCC-------CCCC
T ss_pred hhccCceEEeeccCCCccceec---cccccchheEEecccccCCcccCceEEEeCHHHHHHHHHHhhhh-------ccCc
Confidence 9999999999999987554443 45678999999999999999999999999999999999998863 2345
Q ss_pred hHHHHHHHHHHhhhhcccc
Q psy14416 636 PWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 636 ~W~~~~~~~~~~~~~~~~~ 654 (1065)
.|+....+..++|++.++.
T Consensus 153 ~~~~~~~~~~~~w~e~i~~ 171 (177)
T d2djia1 153 AWWTANLKNIANWREYINM 171 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6777666666676665543
|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.87 E-value=2.5e-22 Score=205.47 Aligned_cols=160 Identities=28% Similarity=0.417 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhh
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHAL 556 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al 556 (1065)
|+++++++++++|++||||||++|.|+.++ .+++++|||++|+||++|.+++|++|++||+++|. ..+.++
T Consensus 4 P~~~~i~~~~~~L~~AkrPvii~G~G~~~a--~~~l~~lae~~~~Pv~tt~~~~g~~~~~h~~~~G~~G~~g~~~~~~~~ 81 (179)
T d1ybha1 4 PEDSHLEQIVRLISESKKPVLYVGGGCLNS--SDELGRFVELTGIPVASTLMGLGSYPCDDELSLHMLGMHGTVYANYAV 81 (179)
T ss_dssp CCHHHHHHHHHHHHHCSSEEEEECGGGTTC--HHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCeEEEECHHHHHH--HHHHHHHHhhhcccceecccccCCCccccccccccCCCcCCHHHHHHH
Confidence 789999999999999999999999998754 57899999999999999999999999999999873 466788
Q ss_pred cCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCch
Q psy14416 557 QNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATSP 636 (1065)
Q Consensus 557 ~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~~ 636 (1065)
++|||||.+|+++++..+..+ ..+.+++++||||.|+..+++++.+++.|++|+..+|++|.+.++.+... .......
T Consensus 82 ~~aDlil~lG~~l~~~~~~~~-~~~~~~~kiI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~ 159 (179)
T d1ybha1 82 EHSDLLLAFGVRFDDRVTGKL-EAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEE-LKLDFGV 159 (179)
T ss_dssp HHCSEEEEESCCCCHHHHSSG-GGTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHHHTHHH-HCCCCHH
T ss_pred Hhhhhhhhccccccccccccc-cccCCCCeEEEEeCcccccccccCCCceEEeccHHHHHHHHHHHHhhhhc-chhhHHH
Confidence 999999999999998655443 44677899999999999999999999999999999999999887532211 1234567
Q ss_pred HHHHHHHHHHh
Q psy14416 637 WWQELKLKCQT 647 (1065)
Q Consensus 637 W~~~~~~~~~~ 647 (1065)
|.+++.+.+++
T Consensus 160 W~~~i~~~k~~ 170 (179)
T d1ybha1 160 WRNELNVQKQK 170 (179)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888766543
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.86 E-value=6.8e-23 Score=217.51 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=106.5
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ ||+++. |+++|+ +++|||+| +|+.++|+
T Consensus 55 G~~lp~ai--Ga~~a~--------p~~~vv---------------------------------~i~GDGsf-~m~~~eL~ 90 (229)
T d2djia3 55 GIAIPGGL--GAKNTY--------PDRQVW---------------------------------NIIGDGAF-SMTYPDVV 90 (229)
T ss_dssp TCHHHHHH--HHHHHC--------TTSCEE---------------------------------EEEEHHHH-HHHGGGHH
T ss_pred cccchhhh--hhhhhc--------cccccc---------------------------------cccccccc-ccccchhh
Confidence 99999998 999998 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +++++|+++||+||++ |+.... .+.. .. + .......+++||+++|++||+++++|++.+||+++
T Consensus 91 ta-----~~~~lpi~iiV~nN~~-~~~i~~-~~~~-~~-~-----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~a 156 (229)
T d2djia3 91 TN-----VRYNMPVINVVFSNTE-YAFIKN-KYED-TN-K-----NLFGVDFTDVDYAKIAEAQGAKGFTVSRIEDMDRV 156 (229)
T ss_dssp HH-----HHTTCCCEEEEEECSB-CTHHHH-HHHH-HC-S-----CCCSCBCCCCCHHHHHHHTTSEEEEECBHHHHHHH
T ss_pred hh-----hcccCCceEEEeCCch-hhhhhH-HHHh-hc-C-----CCCcCcCCCCChhhhhhccCccEEEEecHHHhHHH
Confidence 99 9999999999999987 442222 1211 11 1 11223357899999999999999999999999999
Q ss_pred HHHHHhc--CCCCEEEEEEeCCCCCCCcchhhh
Q psy14416 1028 MKKCLQT--TTRPSLINILINPSADRKPQNFSW 1058 (1065)
Q Consensus 1028 ~~~~~~~--~~~~~li~~~~~~~~~~~~~~~~~ 1058 (1065)
|+++++. .++|+||||.|++++.......+|
T Consensus 157 l~~A~~~~~~~~p~lIev~v~~~~~~p~~~~~~ 189 (229)
T d2djia3 157 MAEAVAANKAGHTVVIDCKITQDRPIPVETLKL 189 (229)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSCCCCCTTSCTT
T ss_pred HHHHHHhcCCCCeEEEEEEeCCCCCCCcccccc
Confidence 9998743 368999999999986554333333
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.86 E-value=3.7e-23 Score=214.03 Aligned_cols=126 Identities=14% Similarity=0.202 Sum_probs=104.3
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ |+++|. |+++|+ +++|||+| +|+.++++
T Consensus 57 G~~l~~ai--Ga~la~--------p~~~vi---------------------------------~i~GDG~f-~~~~~el~ 92 (192)
T d1ozha3 57 GVALPWAI--GAWLVN--------PERKVV---------------------------------SVSGDGGF-LQSSMELE 92 (192)
T ss_dssp TCHHHHHH--HHHHHS--------TTSEEE---------------------------------EEEEHHHH-HHHTTHHH
T ss_pred cccccchh--HHHhhc--------ccccce---------------------------------eecccccc-cchhhhHH
Confidence 89888888 999998 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +++++|+++||+||++ |+..... ..... +. ......+++||+++|++||+++++|++.+||+++
T Consensus 93 t~-----~~~~l~~~iiv~nN~~-~~~~~~~-~~~~~--~~-----~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~a 158 (192)
T d1ozha3 93 TA-----VRLKANVLHLIWVDNG-YNMVAIQ-EEKKY--QR-----LSGVEFGPMDFKAYAESFGAKGFAVESAEALEPT 158 (192)
T ss_dssp HH-----HHHTCCEEEEEEECSB-CHHHHHH-HHHHH--SS-----CCSCBCCCCCHHHHHHTTTSEEEECCSGGGHHHH
T ss_pred HH-----hhhcCceeEEEEcCCC-ccccccc-ccccc--Cc-----cccCcCCCCCHHHHHHHhccccEEeCCHHHHHHH
Confidence 99 9999999999999987 3322211 11111 11 1122246789999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1028 MKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
|+++++. ++|+||||.||+++...
T Consensus 159 l~~a~~~-~gp~lIeV~vd~~~~p~ 182 (192)
T d1ozha3 159 LRAAMDV-DGPAVVAIPVDYRDNPL 182 (192)
T ss_dssp HHHHHHS-SSCEEEEEEBCCTTHHH
T ss_pred HHHHHHc-CCcEEEEEEeCCCCCCc
Confidence 9999987 99999999999987654
|
| >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.86 E-value=8.1e-22 Score=201.72 Aligned_cols=162 Identities=21% Similarity=0.242 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCC-ccccc-------HHHHhh
Q psy14416 484 PGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAH-PNCVS-------AARTHA 555 (1065)
Q Consensus 484 p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~h-pl~lg-------~~~~~a 555 (1065)
.+++++++++++|.+||||+|++|.++.++++.+++.+|+|++|+||++++++||++|++| |+++| ...+++
T Consensus 5 a~~~~i~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~~giPv~tt~~~~g~~~~~~~~~~~G~~g~~~~~~~~~~ 84 (179)
T d1ozha1 5 APDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRL 84 (179)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCEEEEEchhhChhhHHHHHHHHHHhccceEEeecccccccccccccccccccCccccHHHhhh
Confidence 4567899999999999999999999998888899999999999999999999999999976 67765 245678
Q ss_pred hcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCCCc
Q psy14416 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSATS 635 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~~~ 635 (1065)
+++|||||.+|+++.+..+..|. .+++++||||.|+..+++++++++.|++|+..+|++|.+.++++ ....
T Consensus 85 ~~~aDlvl~vG~~~~~~~~~~~~---~~~~kvI~id~d~~~i~~~~~~d~~i~gD~~~~l~~L~~~l~~~------~~~~ 155 (179)
T d1ozha1 85 LQLADLVICIGYSPVEYEPAMWN---SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHR------LVLS 155 (179)
T ss_dssp HHHCSEEEEESCCGGGSCGGGTC---CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCCSC------CCCC
T ss_pred hccccceEEEccccccccccccc---cccccEEEEecchhhcCCccCCCeEEEeCHHHHHHHHHHhhhcc------CCCC
Confidence 89999999999999876665553 35789999999999999999999999999999999999998631 2346
Q ss_pred hHHHHHHHHHHhhhhcccc
Q psy14416 636 PWWQELKLKCQTNRQVKLP 654 (1065)
Q Consensus 636 ~W~~~~~~~~~~~~~~~~~ 654 (1065)
+|..++.+.++++++.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~ 174 (179)
T d1ozha1 156 PQAAEILRDRQHQRELLDR 174 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7777777766666666544
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=9.8e-23 Score=215.80 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=107.4
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
||+++++++ ||+++. |+++|| +++|||+| +|+.+||
T Consensus 65 mG~~~~aai--Ga~lA~--------p~r~Vv---------------------------------~i~GDGsf-~m~~~EL 100 (227)
T d1t9ba3 65 MGYGLPAAI--GAQVAK--------PESLVI---------------------------------DIDGDASF-NMTLTEL 100 (227)
T ss_dssp TTCHHHHHH--HHHHHC--------TTSEEE---------------------------------EEEEHHHH-HHHGGGH
T ss_pred chhhHHHHH--HHHhcC--------CCCeEE---------------------------------EeCCCccc-ccchHHH
Confidence 399899888 999998 999999 99999999 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQ 1026 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 1026 (1065)
+|+ +|+++|+++||+||+| |+..... . ....... ......+.+||.++|++||+++++|++.+||++
T Consensus 101 ~Ta-----~r~~l~i~iiV~nN~~-~g~~~~~-~-~~~~~~~-----~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~ 167 (227)
T d1t9ba3 101 SSA-----VQAGTPVKILILNNEE-QGMVTQW-Q-SLFYEHR-----YSHTHQLNPDFIKLAEAMGLKGLRVKKQEELDA 167 (227)
T ss_dssp HHH-----HHHTCCCEEEEEECSS-CHHHHHH-H-HHHSTTC-----CCSCCCCCCCHHHHHHHTTCEEEEECSHHHHHH
T ss_pred HHH-----hhcCCceEEEEEeccc-ccchhHH-H-hhhhccc-----cccccCCCCCHHHHHhhcccceEeeCCHHHHHH
Confidence 999 9999999999999988 4322221 1 1111111 112345678999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEEeCCCCCCCc
Q psy14416 1027 AMKKCLQTTTRPSLINILINPSADRKP 1053 (1065)
Q Consensus 1027 ~~~~~~~~~~~~~li~~~~~~~~~~~~ 1053 (1065)
+|++++.. ++|+||||.|||++..-|
T Consensus 168 al~~a~~~-~~p~lieV~vd~~~~v~P 193 (227)
T d1t9ba3 168 KLKEFVST-KGPVLLEVEVDKKVPVLP 193 (227)
T ss_dssp HHHHHHHC-SSCEEEEEEBCSSCCCSS
T ss_pred HHHHHHHC-CCCEEEEEEECCCCCccC
Confidence 99999987 999999999999997655
|
| >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.86 E-value=6.2e-22 Score=202.20 Aligned_cols=139 Identities=23% Similarity=0.284 Sum_probs=123.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH------------HH
Q psy14416 485 GIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA------------AR 552 (1065)
Q Consensus 485 ~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~------------~~ 552 (1065)
.++++++++++|++||||+|++|.+++++++.+++++|+|++|+||++|+++||++|++||+++|. ..
T Consensus 5 ~~~~i~~a~~lL~~AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~~kg~~p~~hp~~~G~~~~~~~G~~~~~~~ 84 (177)
T d2ihta1 5 WQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPAL 84 (177)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhCCCEEEEECcCcchhhhHHHHHHHhhcceEEEEeccccccCCCCcccceeeeeeeccccccccHHH
Confidence 367899999999999999999999998888899999999999999999999999999999999973 24
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcc
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSH 624 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~ 624 (1065)
++++++||+||.+|+++.+..+..+. .+.++.++||||.|+..+++++++++.|.+|+..+|++|.+.+..
T Consensus 85 ~~~l~~aDlvl~vG~~~~~~~~~~~~-~~~~~~k~I~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~ 155 (177)
T d2ihta1 85 QTMFAPVDLVLTVGYDYAEDLRPSMW-QKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATAS 155 (177)
T ss_dssp HHHHTTCCEEEEETCCGGGCCCHHHH-CCSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTT
T ss_pred HHHhccCCceEEeccccccccccccc-ccCCccceeEEcCCHHHhCCccCCCeEEEeCHHHHHHHHHHHhhh
Confidence 67889999999999999865443322 355678999999999999999999999999999999999998864
|
| >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.3e-21 Score=198.77 Aligned_cols=152 Identities=20% Similarity=0.340 Sum_probs=129.7
Q ss_pred HHHHHHHHhCCCcEEEEccCCC-chhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH-------HHHhhhcCCCE
Q psy14416 490 KQASRLILEAKAPLVIIGKGAA-YSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA-------ARTHALQNADL 561 (1065)
Q Consensus 490 ~~~ae~L~~AkrPvIlvG~g~~-~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~-------~~~~al~~aDl 561 (1065)
++++++|++|||||||+|.|+. .+++.+++++|||++|+||++|.+++|++|++||+++|. ..+..++++|+
T Consensus 1 nkaa~lL~~AkrPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~~~~g~~~~~hp~~~G~~g~~~~~~a~~~~~~~Dl 80 (171)
T d1t9ba1 1 NKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADL 80 (171)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSE
T ss_pred CHHHHHHHHCCCeEEEECcChhhhhhHHHHHHHHHHhcCCceeecccccccccCCcccccccccccccHHHHhhhhcccc
Confidence 4689999999999999999874 457788999999999999999999999999999999872 46678899999
Q ss_pred EEEeCCccccccccCCCc--------cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcccccCCCCCC
Q psy14416 562 VLLLGARLNWILHFGRAP--------RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSHTQRNWSFSA 633 (1065)
Q Consensus 562 VI~iG~~~~~~~~~g~~~--------~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~~~~~~~~~~ 633 (1065)
||.+|+++.+..+.++.. .+.++.++||||.|+..+++.+++++.|++|+..+|++|.+.+.+ .+.
T Consensus 81 vl~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~iI~Id~d~~el~~~~~~d~~i~~D~~~~l~~L~~~l~~------~~~ 154 (171)
T d1t9ba1 81 IIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFP------VKE 154 (171)
T ss_dssp EEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCC------CCC
T ss_pred eeecccccccccccccchhhhhhhhcccCCCceEEEEeCCccccCCcccCceeEEEcHHHHHHHHHHhccc------ccC
Confidence 999999999876655421 134578999999999999999999999999999999999998862 245
Q ss_pred CchHHHHHHHHHHh
Q psy14416 634 TSPWWQELKLKCQT 647 (1065)
Q Consensus 634 ~~~W~~~~~~~~~~ 647 (1065)
+.+|.+++++.+++
T Consensus 155 ~~~W~~~~~~~k~~ 168 (171)
T d1t9ba1 155 RSEWFAQINKWKKE 168 (171)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 67898888776654
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.85 E-value=8.2e-23 Score=209.87 Aligned_cols=124 Identities=31% Similarity=0.517 Sum_probs=102.5
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ +++ +. |+++|+ +++|||+| +|+.++++
T Consensus 60 G~~l~~ai--g~~-a~--------~~~~vv---------------------------------~i~GDGsf-~~~~~el~ 94 (183)
T d2ji7a3 60 GIGMGYCV--AAA-AV--------TGKPVI---------------------------------AVEGDSAF-GFSGMELE 94 (183)
T ss_dssp TCHHHHHH--HHH-HH--------HCSCEE---------------------------------EEEEHHHH-HTTGGGHH
T ss_pred ccccchhh--hhh-cC--------CcceEE---------------------------------EEEcCcch-hhchhhhh
Confidence 88888877 554 45 788999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +++++|+++||+||+|++.......+ .+. ......+.+||+++|++||+++++|++.+||+++
T Consensus 95 ta-----~~~~l~i~iiV~NN~g~~~~~q~~~~-----~~~-----~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~a 159 (183)
T d2ji7a3 95 TI-----CRYNLPVTVIIMNNGGIYKGNEADPQ-----PGV-----ISCTRLTRGRYDMMMEAFGGKGYVANTPAELKAA 159 (183)
T ss_dssp HH-----HHTTCCEEEEEEECSBSSCSCCCCSB-----TTB-----CCTTBCCCCCHHHHHHHTTCEEEEECSHHHHHHH
T ss_pred hh-----hhccccchhhhhhhhhhhhhhhcccc-----ccc-----cccccccccchhhhhhhcCCcEEEeCCHHHHHHH
Confidence 99 99999999999999985442221111 111 1233457789999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1028 MKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
|+++++. ++|+||||.|||+++.+
T Consensus 160 l~~a~~~-~~p~lIev~idp~~~ve 183 (183)
T d2ji7a3 160 LEEAVAS-GKPCLINAMIDPDAGVE 183 (183)
T ss_dssp HHHHHHH-TSCEEEEEEBCTTSCCT
T ss_pred HHHHHhC-CCcEEEEEEECCCCCCC
Confidence 9999987 99999999999999864
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.85 E-value=8.4e-22 Score=205.64 Aligned_cols=130 Identities=23% Similarity=0.311 Sum_probs=107.1
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ +|+++. |+++|+ +++|||+| +|+.++|+
T Consensus 54 G~~l~aAi--Ga~la~--------p~~~vv---------------------------------~i~GDGsf-~m~~~eL~ 89 (204)
T d1zpda3 54 GWSVPAAF--GYAVGA--------PERRNI---------------------------------LMVGDGSF-QLTAQEVA 89 (204)
T ss_dssp TTHHHHHH--HHHHHC--------TTSEEE---------------------------------EEEEHHHH-HHHGGGHH
T ss_pred chhhHHHH--HHHHhC--------CCCcee---------------------------------ccccccce-eeeecccc
Confidence 99999888 999998 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHc---------CCCeEee
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVF---------GHDGYLC 1018 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~~~ 1018 (1065)
|+ +++++|+++||+||+| |+... ... ...+....++||.++++.| |+++++|
T Consensus 90 Ta-----~~~~lpi~iiV~NN~~-~g~~~------~~~-------~~~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v 150 (204)
T d1zpda3 90 QM-----VRLKLPVIIFLINNYG-YTIEV------MIH-------DGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKA 150 (204)
T ss_dssp HH-----HHTTCCCEEEEEECSS-CHHHH------TTS-------CCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEE
T ss_pred hh-----hhcccccceEEEeccc-ccccc------eec-------cccccccchhhhhhhhhhcCcchhhhccCccEEEe
Confidence 99 9999999999999988 32110 000 1123344678999998875 8889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCcchhhhhHh
Q psy14416 1019 TTVPQIKQAMKKCLQTTTRPSLINILINPSADRKPQNFSWLTN 1061 (1065)
Q Consensus 1019 ~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 1061 (1065)
+|.+||++++++++...++|+||||.++|++..+| ...|.++
T Consensus 151 ~~~~el~~al~~al~~~~gp~lieV~vd~~~~~~p-~~~~g~~ 192 (204)
T d1zpda3 151 KTGGELAEAIKVALANTDGPTLIECFIGREDCTEE-LVKWGKR 192 (204)
T ss_dssp SBHHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHH-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCcEEEEEEECcccCCcc-cchhccH
Confidence 99999999999998655899999999999988776 4455543
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.84 E-value=4.4e-22 Score=206.75 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=103.2
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++++ ||+++. |+++|| +++|||+| +|+.++++
T Consensus 65 G~~lp~ai--Ga~~a~--------p~~~Vv---------------------------------~i~GDGsf-~~~~~el~ 100 (198)
T d2ihta3 65 GYGIPAAI--GAQMAR--------PDQPTF---------------------------------LIAGDGGF-HSNSSDLE 100 (198)
T ss_dssp TCHHHHHH--HHHHHS--------TTSCEE---------------------------------EEEEHHHH-HHTGGGHH
T ss_pred hhHHHHHH--HHhhhh--------cccceE---------------------------------eecccccc-cccchhhh
Confidence 99999988 999999 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQA 1027 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 1027 (1065)
|+ +|+++|+++||+||++ |+.... ++.....+. .......+++||.++|++||+++++|++.+||+++
T Consensus 101 t~-----~~~~lpi~ivV~NN~~-~g~i~~--~q~~~~~~~----~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~a 168 (198)
T d2ihta3 101 TI-----ARLNLPIVTVVVNNDT-NGLIEL--YQNIGHHRS----HDPAVKFGGVDFVALAEANGVDATRATNREELLAA 168 (198)
T ss_dssp HH-----HHHTCCCEEEEEECSB-CHHHHH--HHHHHHSSC----CGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred hh-----hhhhhhhhHHHhhccc-cceEee--eeccccccc----cccccccCCcchhhhccccCceEEEeCCHHHHHHH
Confidence 99 9999999999999987 443322 111111111 11122335789999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEEEEeCCCC
Q psy14416 1028 MKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 1028 ~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
|+++++. ++|+||||+||++.
T Consensus 169 l~~a~~~-~~p~lIeV~vd~d~ 189 (198)
T d2ihta3 169 LRKGAEL-GRPFLIEVPVNYDF 189 (198)
T ss_dssp HHHHHTS-SSCEEEEEEBCCCC
T ss_pred HHHHHhC-CCCEEEEEEcCCCC
Confidence 9999987 99999999999864
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=1.4e-21 Score=200.46 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=99.4
Q ss_pred ccccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhH
Q psy14416 867 NGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTY 946 (1065)
Q Consensus 867 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 946 (1065)
||+++++++ ++++|. |+++|+ +++|||+| +|+.+++
T Consensus 62 mG~~~p~Ai--Ga~la~--------p~~~vv---------------------------------~i~GDG~f-~~~~~el 97 (183)
T d1q6za3 62 LGFALPAAI--GVQLAE--------PERQVI---------------------------------AVIGDGSA-NYSISAL 97 (183)
T ss_dssp TTSHHHHHH--HHHHHC--------TTSCEE---------------------------------EEEEHHHH-TTTGGGH
T ss_pred cccchhHHH--hhhhhc--------cccceE---------------------------------Eecccccc-ccccHHH
Confidence 388888888 999998 999999 99999999 9999999
Q ss_pred HHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCeEeeCCHHHHHH
Q psy14416 947 ASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDGYLCTTVPQIKQ 1026 (1065)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 1026 (1065)
+++ +++++|+++||+||++ |+..... ... ..... ......+.+||+++|++||+++++|++.+||++
T Consensus 98 ~ta-----~~~~lpv~~iV~nN~~-~g~~~~~-~~~-~~~~~-----~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~ 164 (183)
T d1q6za3 98 WTA-----AQYNIPTIFVIMNNGT-YGALRWF-AGV-LEAEN-----VPGLDVPGIDFRALAKGYGVQALKADNLEQLKG 164 (183)
T ss_dssp HHH-----HHHTCCCEEEEEECSB-CHHHHHH-HHH-HTCCS-----CCSCBCCCCCHHHHHHHHTCEEEEESSHHHHHH
T ss_pred HHH-----HHhCCCEEEEEEeccc-cchhhhh-hhc-ccccC-----cccccCCCccHHHHHHHcCCEEEEECCHHHHHH
Confidence 999 9999999999999987 3322211 111 11111 112234789999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEEe
Q psy14416 1027 AMKKCLQTTTRPSLINILI 1045 (1065)
Q Consensus 1027 ~~~~~~~~~~~~~li~~~~ 1045 (1065)
+++++++. ++|+||||.|
T Consensus 165 al~~a~~~-~gp~lieV~T 182 (183)
T d1q6za3 165 SLQEALSA-KGPVLIEVST 182 (183)
T ss_dssp HHHHHHTC-SSCEEEEEEB
T ss_pred HHHHHHhC-CCcEEEEEEe
Confidence 99999987 9999999986
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.80 E-value=6.6e-21 Score=197.62 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=99.8
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++++++ ||+++. |+++|| +++|||+| +|+.++|+
T Consensus 56 G~~l~~ai--Ga~la~--------p~~~vv---------------------------------~i~GDG~f-~~~~~eL~ 91 (196)
T d1ovma3 56 GYTLAAAF--GAQTAC--------PNRRVI---------------------------------VLTGDGAA-QLTIQELG 91 (196)
T ss_dssp THHHHHHH--HHHHHC--------TTSCEE---------------------------------EEEEHHHH-HHHTTHHH
T ss_pred cccchhhH--HHHHhh--------hcccee---------------------------------cccccccc-eeeccccc
Confidence 89888888 999998 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCC----CeEeeCCHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGH----DGYLCTTVPQ 1023 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~ 1023 (1065)
|+ +++++|+++||+||+| |+.. .... +. ...+...+.+||.+++++||. ++++|++.+|
T Consensus 92 ta-----~~~~l~i~iiV~nN~~-~~~~-----~~~~--~~----~~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~~~~e 154 (196)
T d1ovma3 92 SM-----LRDKQHPIILVLNNEG-YTVE-----RAIH--GA----EQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQ 154 (196)
T ss_dssp HH-----HHTTCCCEEEEEESSS-CHHH-----HHHS--CT----TCGGGCCCCCCGGGSTTTSCSSCCEEEEEECBHHH
T ss_pred cc-----ccccccceEEEEecCc-cccc-----hhhh--cc----ccccccccccccchhHHhcCccccceeEEEecHHH
Confidence 99 9999999999999988 3311 1110 11 112334456899999999996 5889999999
Q ss_pred HHHHHHHHHhcCCCCEEEEEEeCCCC
Q psy14416 1024 IKQAMKKCLQTTTRPSLINILINPSA 1049 (1065)
Q Consensus 1024 l~~~~~~~~~~~~~~~li~~~~~~~~ 1049 (1065)
|+++|+++++. ++|+||||++++++
T Consensus 155 l~~al~~a~~~-~gp~lIev~~~~~~ 179 (196)
T d1ovma3 155 LADVLEKVAHH-ERLSLIEVMLPKAD 179 (196)
T ss_dssp HHHHHHHHTTC-SSEEEEEEECCTTC
T ss_pred HHHHHHHHHHC-CCcEEEEEEeChHh
Confidence 99999999986 89999999998864
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=3.9e-20 Score=191.79 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=96.8
Q ss_pred cccccccchhhhhheeccccccccccEEEEEccCcccCCccccccceeccccceeeeccceEEEEeccccccCcchhhHH
Q psy14416 868 GIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDETTYA 947 (1065)
Q Consensus 868 g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~ 947 (1065)
|+++|+++ +++++.+... |+++|| +++|||+| +|+.++|+
T Consensus 56 G~~l~~ai--G~alaa~~~~----p~~~Vv---------------------------------~i~GDGsf-~m~~~eL~ 95 (196)
T d1pvda3 56 GFTTGATL--GAAFAAEEID----PKKRVI---------------------------------LFIGDGSL-QLTVQEIS 95 (196)
T ss_dssp THHHHHHH--HHHHHHHHHC----TTCCEE---------------------------------EEEEHHHH-HHHGGGHH
T ss_pred cccccchh--HHHHHHHhcC----CCCcee---------------------------------eccCcccc-cccccccc
Confidence 77777766 6666543333 999999 99999999 99999999
Q ss_pred HhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHHcCCCe---EeeCCHHHH
Q psy14416 948 SIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAVFGHDG---YLCTTVPQI 1024 (1065)
Q Consensus 948 ~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~l 1024 (1065)
|+ +|+++|+++||+||+| |+. . +..... ...+...+++||.++|++||+++ ++|+|.+||
T Consensus 96 ta-----~~~~l~i~~iV~nN~~-y~~-~-----~~~~~~-----~~~~~~~~~~d~~~la~a~G~~~~~~~~v~~~~el 158 (196)
T d1pvda3 96 TM-----IRWGLKPYLFVLNNDG-YTI-E-----KLIHGP-----KAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEW 158 (196)
T ss_dssp HH-----HHTTCCCEEEEEESSS-CHH-H-----HTTSCT-----TCGGGCCCCCCGGGHHHHTTCSSEEEEEECBHHHH
T ss_pred cc-----ccccccceEEEEeCCc-cce-e-----EeeccC-----ccccccCCCCCHHHHHHHhCCCCceEEEecCHHHH
Confidence 99 9999999999999998 331 1 110001 11233446789999999999876 679999999
Q ss_pred HHHHHHHH-hcCCCCEEEEEEeCCCCC
Q psy14416 1025 KQAMKKCL-QTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1025 ~~~~~~~~-~~~~~~~li~~~~~~~~~ 1050 (1065)
+++++++. ...++|+||||.++|.+-
T Consensus 159 ~~al~~~~~~~~~~~~lIeV~i~~~d~ 185 (196)
T d1pvda3 159 DKLTQDKSFNDNSKIRMIEIMLPVFDA 185 (196)
T ss_dssp HHHHTCTTTTSCSSEEEEEEECCTTCC
T ss_pred HHHHHHHHHhCCCCcEEEEEECCCccC
Confidence 99997654 334789999999998765
|
| >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.78 E-value=7.6e-19 Score=175.94 Aligned_cols=141 Identities=18% Similarity=0.288 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEec-CCCCCCCCCCCccccc------HHHHhh
Q psy14416 483 WPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPT-PMGKGVVPDAHPNCVS------AARTHA 555 (1065)
Q Consensus 483 ~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt-~~gkg~v~~~hpl~lg------~~~~~a 555 (1065)
.++++++++++++|++||||+|++|.++.++++.+++.+|+|++|+||++| .+++++++++||++.| ...+++
T Consensus 3 ~~~~~~ld~~~~~l~~A~rPvii~G~g~~~~~~~~~l~~lae~l~~pv~~t~~~~~~~~~~~~p~~~G~~~~~~~~~~~~ 82 (160)
T d1q6za1 3 RLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQL 82 (160)
T ss_dssp CCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEECcCccccccchHHHHHHHhcCceEEeecccccccccccccccccccccCcHHHHHH
Confidence 478999999999999999999999999887888999999999999998765 5688999999999987 245778
Q ss_pred hcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhcc
Q psy14416 556 LQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLSH 624 (1065)
Q Consensus 556 l~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~~ 624 (1065)
++++|+||.+|+++.+..++.+...+.+++++||||.|+..++++ +.+..+++|+..+|++|.+.+++
T Consensus 83 l~~aDlil~lG~~l~~~~~~~~~~~~~~~~~ii~v~~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~ 150 (160)
T d1q6za1 83 LEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARA-PMGDAIVADIGAMASALANLVEE 150 (160)
T ss_dssp HTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHC-SSSEEEESCHHHHHHHHHHHSCC
T ss_pred HhcCCeEEEEecccccccccccccccccCceEEEeeCCHHHhCCC-CCCeeEEeCHHHHHHHHHHhccc
Confidence 999999999999998776666655566788999999999998864 57899999999999999999874
|
| >d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=1.3e-19 Score=185.17 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=114.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHH
Q psy14416 482 PWPGIAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ART 553 (1065)
Q Consensus 482 ~~p~~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~ 553 (1065)
+.++++.+++++++|++||||+||+|.++.+.++.+++++|+|++|+||+++++|||+++++||+|+|. ..+
T Consensus 13 ~~~~~~~i~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~e~hp~~~G~~~g~~~~~~~~ 92 (179)
T d1pvda1 13 AESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVK 92 (179)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEECGGGTTTSTHHHHHHHHHHHCCCEEECGGGTTSSCTTSTTEEEECCSTTSCHHHH
T ss_pred CcccHHHHHHHHHHHHhCCCCEEEEecccchhhhHHHHHHHHHhhCceEEecccccccccccccccccccccccCCHHHH
Confidence 345678899999999999999999999999888999999999999999999999999999999999972 356
Q ss_pred hhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 554 HALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 554 ~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
+++++||+||.+|+++++..+.+|.. +.++.++|+||.|+..++..+..++.+.++++.++++|.+..+
T Consensus 93 ~~~~~aDlvl~lG~~~~d~~t~~~~~-~~~~~~iI~i~~d~~~i~~~~~~~v~i~~~l~~ll~~l~~~~~ 161 (179)
T d1pvda1 93 EAVESADLILSVGALLSDFNTGSFSY-SYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTNIADAAK 161 (179)
T ss_dssp HHHHTCSEEEEESCCCCC-----------CCCEEEEEETTEEEETTEEEETCCHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCEEEEEcCCccccccCcCcc-cCCCCcEEEEeCCHHHhCCcccCCccHHHHHHHHHHHHHHHHh
Confidence 78899999999999999877776654 3466789999999999988877777776666666666655443
|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.76 E-value=1e-18 Score=177.80 Aligned_cols=133 Identities=15% Similarity=0.211 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhc
Q psy14416 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQ 557 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~ 557 (1065)
...+++++++|.+||||+||+|.++.+.++.+++++|+|++|+||++++++||.+|++||+|+|. ..+++++
T Consensus 9 ~~~v~~~~~~l~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~i~e~~p~~~G~~~G~~~~~~~~~~~~ 88 (175)
T d1zpda1 9 NAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMK 88 (175)
T ss_dssp HHHHHHHHHHHTTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCCEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECcCccccchHHHHHHHHHhhceeEEeccccccCCCcccccccCCcccccchHHHHHHHh
Confidence 56788999999999999999999999888999999999999999999999999999999999883 3467789
Q ss_pred CCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 558 NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 558 ~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
+||+||.+|+++++..+.+|.. +.++.++||||+|+..++..+..++ ++.++|++|.++++
T Consensus 89 ~aDlvl~lG~~~~d~~t~~~~~-~~~~~~~I~i~~d~~~i~~~~~~~v----~~~~~l~~L~~~l~ 149 (175)
T d1zpda1 89 EADAVIALAPVFNDYSTTGWTD-IPDPKKLVLAEPRSVVVNGIRFPSV----HLKDYLTRLAQKVS 149 (175)
T ss_dssp HCSEEEEESCCCBTTTTTTTTC-CCCGGGEEEECSSEEEETTEEEESC----CHHHHHHHHHHHCC
T ss_pred cCceEEEEcCccCccccCCccc-cCCCCeEEEEeCchheEcccccCCc----CHHHHHHHHHHHhc
Confidence 9999999999999887777654 4456789999999988876654443 67899999999886
|
| >d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.75 E-value=7.1e-19 Score=176.50 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCCCCCCCCCCCcccccH--------HHHhhhc
Q psy14416 486 IAELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPMGKGVVPDAHPNCVSA--------ARTHALQ 557 (1065)
Q Consensus 486 ~~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~gkg~v~~~hpl~lg~--------~~~~al~ 557 (1065)
+..+++++++|++||||+||+|.++.++++.++|++|+|++++||++|++|||.+|++||+|+|. ..+++++
T Consensus 16 ~a~~~~a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~~iPv~tt~~gkg~i~e~~p~~~G~~~G~~~~~~~~~~i~ 95 (161)
T d1ovma1 16 KAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIE 95 (161)
T ss_dssp HHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEECcCcChhhhHHHHHHHHHhcCccEEEcCCcCCcccccccccccccCCCcCcHHHHHHHh
Confidence 34455677799999999999999999889999999999999999999999999999999999872 4567889
Q ss_pred CCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 558 NADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 558 ~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
++|+||.+|+++++..+.+|...+ ++.++||||+|+..++..+..++ ++.++|++|.+.++
T Consensus 96 ~aDliL~iG~~l~~~~t~~~~~~~-~~~kiI~id~d~~~i~~~~~~~v----~l~~~l~~L~e~l~ 156 (161)
T d1ovma1 96 GADTVLCVGTRFTDTLTAGFTHQL-TPAQTIEVQPHAARVGDVWFTGI----PMNQAIETLVELCK 156 (161)
T ss_dssp TSSEEEEESCCCCTTTTTTTCCCC-CTTTEEEECSSEEEETTEEEESC----CHHHHHHHHHHHHH
T ss_pred cCCEEEEECCcccccccccccccC-CCceEEEEeCCHHHhCCeeecCc----cHHHHHHHHHHHHH
Confidence 999999999999988777776543 45789999999999988776666 44778888888776
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.74 E-value=5.2e-19 Score=183.37 Aligned_cols=106 Identities=24% Similarity=0.341 Sum_probs=86.9
Q ss_pred ccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeee
Q psy14416 162 LLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241 (1065)
Q Consensus 162 ~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~ 241 (1065)
++....|++++.++.+|+|||++|+|+|++++ +|+|+||+++|||||+|+++||+|++|+++|+++||+||++|
T Consensus 46 ~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~~a----~p~~~Vv~i~GDGsf~~~~~el~t~~~~~lpi~ivV~NN~~~-- 119 (198)
T d2ihta3 46 FARADQPFGFLTSAGCSSFGYGIPAAIGAQMA----RPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTN-- 119 (198)
T ss_dssp HCCCCSTTSEECCSSSCCTTCHHHHHHHHHHH----STTSCEEEEEEHHHHHHTGGGHHHHHHHTCCCEEEEEECSBC--
T ss_pred HcCcCCCCeEEecCCcccchhHHHHHHHHhhh----hcccceEeecccccccccchhhhhhhhhhhhhhHHHhhcccc--
Confidence 35567899999999999999999999999999 799999999999999999999999999999999999999977
Q ss_pred ccccchhhhhhhhhccCCCcccccCccHHHHHHHH
Q psy14416 242 GFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQA 276 (1065)
Q Consensus 242 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~ 276 (1065)
|+.+ ++|...+.................++++
T Consensus 120 g~i~---~~q~~~~~~~~~~~~~~~~~d~~~lA~a 151 (198)
T d2ihta3 120 GLIE---LYQNIGHHRSHDPAVKFGGVDFVALAEA 151 (198)
T ss_dssp HHHH---HHHHHHHSSCCGGGTBCCCCCHHHHHHH
T ss_pred ceEe---eeeccccccccccccccCCcchhhhccc
Confidence 7765 5666555443322222233456778887
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.73 E-value=1.2e-18 Score=182.10 Aligned_cols=140 Identities=29% Similarity=0.377 Sum_probs=105.8
Q ss_pred ccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeee
Q psy14416 162 LLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241 (1065)
Q Consensus 162 ~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~ 241 (1065)
++....|++++.++.+|+||+++|+|+|+++| +|+|+|||++|||||+|+.|||+|++||++|+++||+||++|
T Consensus 36 ~~~~~~~~~~~~~~~~g~mG~glpaaiGa~~A----~p~~~Vi~i~GDGsf~m~~~El~Ta~r~~lpi~iiV~NN~~~-- 109 (208)
T d1ybha3 36 FYNYKKPRQWLSSGGLGAMGFGLPAAIGASVA----NPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHL-- 109 (208)
T ss_dssp SCCCSSTTSEECCCSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHTTTHHHHHHHTTCCEEEEEEECSBC--
T ss_pred hcccCCCceeccccccccchhhhhhHHHHHhc----CCCCcEEEEccCCchhhhhhhHHHHHHhCCCEEEEEEecccc--
Confidence 45667899999999999999999999999999 799999999999999999999999999999999999999977
Q ss_pred ccccchhhhhhhhhccCCCcccc-------cCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCc
Q psy14416 242 GFDEATYAWLDIIKKSNMSEDYD-------EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQ 314 (1065)
Q Consensus 242 g~~~~~~~~~~l~~~~g~~~~~~-------~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~ 314 (1065)
|+.+ ++|+..+..+...... ........++++ ||+.|.++... +|.
T Consensus 110 g~i~---~~q~~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a---------~G~~~~~v~~~---------------~el 162 (208)
T d1ybha3 110 GMVM---QWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAA---------CGIPAARVTKK---------------ADL 162 (208)
T ss_dssp HHHH---HHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHH---------TTCCEEEECBH---------------HHH
T ss_pred ccce---ehhhhcccccccccccccccccCCCCCCHHHhhcc---------CCceEEEcCCH---------------HHH
Confidence 7766 7888776554432211 122356677777 66666544322 111
Q ss_pred hHHHHHHHHHHHhCCCeEEEEec
Q psy14416 315 AACYAAQAIGYLTKKPGVCLVVS 337 (1065)
Q Consensus 315 ~A~~~A~g~ar~tgkpgv~~~ts 337 (1065)
.. |.-.+..+++|.++-+..
T Consensus 163 ~~---al~~a~~~~~p~lIeV~i 182 (208)
T d1ybha3 163 RE---AIQTMLDTPGPYLLDVIC 182 (208)
T ss_dssp HH---HHHHHHHSSSCEEEEEEC
T ss_pred HH---HHHHHHhCCCCEEEEEEE
Confidence 12 222344578888887753
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.71 E-value=2.3e-18 Score=182.02 Aligned_cols=105 Identities=27% Similarity=0.308 Sum_probs=85.9
Q ss_pred ccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeee
Q psy14416 162 LLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241 (1065)
Q Consensus 162 ~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~ 241 (1065)
++....|++++.++.+|+||+++|+|+||++| .|+|+|||++|||||+|++|||+|++||++|+++||+||++|
T Consensus 39 ~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la----~p~~~Vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y-- 112 (228)
T d2ez9a3 39 HLKLTPSNRHITSNLFATMGVGIPGAIAAKLN----YPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQY-- 112 (228)
T ss_dssp HCCCCTTCEEECCCSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSBC--
T ss_pred HccCCCCceeeeecccccccccchhhhhhhhh----hccceeEeecCCccccccchhhhhhccccCceEEEEeccccc--
Confidence 35557789999999999999999999999999 799999999999999999999999999999999999999977
Q ss_pred ccccchhhhhhhhhccCCCcccccCccHHHHHHHH
Q psy14416 242 GFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQA 276 (1065)
Q Consensus 242 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~ 276 (1065)
|+++ ++|+..+..+...... .......++++
T Consensus 113 g~i~---~~q~~~~~~~~~~~~l-~~~d~~~iA~a 143 (228)
T d2ez9a3 113 GWIK---DEQEDTNQNDFIGVEF-NDIDFSKIADG 143 (228)
T ss_dssp HHHH---HHHHHHCSSCCCSSBC-CCCCHHHHHHH
T ss_pred hhhh---hhhhhcccCCcccccc-cCccHHhhccc
Confidence 7765 6666655444322222 22455667766
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1.9e-17 Score=174.81 Aligned_cols=138 Identities=27% Similarity=0.337 Sum_probs=103.5
Q ss_pred ccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeee
Q psy14416 162 LLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241 (1065)
Q Consensus 162 ~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~ 241 (1065)
++....|++++.+..+++||+++|+|+|+++| .|+|+||+++|||||+|++|||+|++|+++|+++||+||++|
T Consensus 47 ~~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA----~p~r~Vv~i~GDGsf~m~~~EL~Ta~r~~l~i~iiV~nN~~~-- 120 (227)
T d1t9ba3 47 HWTWRNPHTFITSGGLGTMGYGLPAAIGAQVA----KPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQ-- 120 (227)
T ss_dssp HSCCCSTTCEECCCSSCCTTCHHHHHHHHHHH----CTTSEEEEEEEHHHHHHHGGGHHHHHHHTCCCEEEEEECSSC--
T ss_pred HcCCCCCceEeeecccccchhhHHHHHHHHhc----CCCCeEEEeCCCcccccchHHHHHHhhcCCceEEEEEecccc--
Confidence 35667899999999999999999999999999 799999999999999999999999999999999999999987
Q ss_pred ccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHH
Q psy14416 242 GFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQ 321 (1065)
Q Consensus 242 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~ 321 (1065)
|+.+ ++|+..+..+..... ........++++ ||+.|.++... +|..++ +
T Consensus 121 g~~~---~~~~~~~~~~~~~~~-~~~~d~~~iA~a---------~G~~~~~v~~~---------------~el~~a---l 169 (227)
T d1t9ba3 121 GMVT---QWQSLFYEHRYSHTH-QLNPDFIKLAEA---------MGLKGLRVKKQ---------------EELDAK---L 169 (227)
T ss_dssp HHHH---HHHHHHSTTCCCSCC-CCCCCHHHHHHH---------TTCEEEEECSH---------------HHHHHH---H
T ss_pred cchh---HHHhhhhcccccccc-CCCCCHHHHHhh---------cccceEeeCCH---------------HHHHHH---H
Confidence 6654 666666554433222 233456677776 55555433221 122222 2
Q ss_pred HHHHHhCCCeEEEEe
Q psy14416 322 AIGYLTKKPGVCLVV 336 (1065)
Q Consensus 322 g~ar~tgkpgv~~~t 336 (1065)
--+..+++|.++-+.
T Consensus 170 ~~a~~~~~p~lieV~ 184 (227)
T d1t9ba3 170 KEFVSTKGPVLLEVE 184 (227)
T ss_dssp HHHHHCSSCEEEEEE
T ss_pred HHHHHCCCCEEEEEE
Confidence 234457888888875
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.67 E-value=2.4e-17 Score=174.40 Aligned_cols=105 Identities=27% Similarity=0.280 Sum_probs=83.5
Q ss_pred cccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeee
Q psy14416 161 SLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIY 240 (1065)
Q Consensus 161 ~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~ 240 (1065)
.++....|++++.++.+|+||+++|+|+||+++ +|+|+|||++|||||+|+.+||+|++|+++|+++||+||++|
T Consensus 35 ~~~~~~~~~~~~~s~~~g~mG~~lp~aiGa~~a----~p~~~vv~i~GDGsf~m~~~eL~ta~~~~lpi~iiV~nN~~~- 109 (229)
T d2djia3 35 RHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNT----YPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEY- 109 (229)
T ss_dssp GTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSBC-
T ss_pred HHcccCCCCeEEecCCcccccccchhhhhhhhh----cccccccccccccccccccchhhhhhcccCCceEEEeCCchh-
Confidence 346667899999999999999999999999999 799999999999999999999999999999999999999977
Q ss_pred eccccchhhhhhhhhccCCCcccccCccHHHHHHHH
Q psy14416 241 GGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQA 276 (1065)
Q Consensus 241 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~ 276 (1065)
++++ +.|+........ ..........++++
T Consensus 110 -~~i~---~~~~~~~~~~~~--~~~~~~d~~~lA~a 139 (229)
T d2djia3 110 -AFIK---NKYEDTNKNLFG--VDFTDVDYAKIAEA 139 (229)
T ss_dssp -THHH---HHHHHHCSCCCS--CBCCCCCHHHHHHH
T ss_pred -hhhh---HHHHhhcCCCCc--CcCCCCChhhhhhc
Confidence 7655 444443322211 11122345566665
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.65 E-value=4.4e-17 Score=169.52 Aligned_cols=139 Identities=22% Similarity=0.222 Sum_probs=95.8
Q ss_pred CCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeecccc
Q psy14416 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGGFDE 245 (1065)
Q Consensus 166 ~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g~~~ 245 (1065)
..+.+++.+..+|+|||++|+|+|++++ .|+|+|||++|||||+|+.|||+|++|+++|+++||+||++| |+.+
T Consensus 39 ~~~~~~~~~~~~g~mG~~l~aAiGa~la----~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~iiV~NN~~~--g~~~ 112 (204)
T d1zpda3 39 PNGARVEYEMQWGHIGWSVPAAFGYAVG----APERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGY--TIEV 112 (204)
T ss_dssp CTTCEEEECTTTCCTTTHHHHHHHHHHH----CTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSC--HHHH
T ss_pred CCCCeEEcCCCCcccchhhHHHHHHHHh----CCCCceeccccccceeeeecccchhhhcccccceEEEecccc--cccc
Confidence 4677788889999999999999999999 799999999999999999999999999999999999999987 6543
Q ss_pred chhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCch---hhhHH----Hhhc-CC---ceEEEccCCc
Q psy14416 246 ATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPV---IELAM----ACQQ-EG---IHYIGMRNEQ 314 (1065)
Q Consensus 246 ~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~---~~l~~----al~~-~~---i~~i~~~~E~ 314 (1065)
.+++..+... .-.....+++.+.-.++-..+|+.|.++ .+|.. ++.+ ++ |+++.-++|.
T Consensus 113 ---~~~~~~~~~~-------~~~d~~~~~~~~~~~~~a~~~g~~~~~v~~~~el~~al~~al~~~~gp~lieV~vd~~~~ 182 (204)
T d1zpda3 113 ---MIHDGPYNNI-------KNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDC 182 (204)
T ss_dssp ---TTSCCGGGCC-------CCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEEEEECCTTCC
T ss_pred ---eecccccccc-------chhhhhhhhhhcCcchhhhccCccEEEecCHHHHHHHHHHHHHcCCCcEEEEEEECcccC
Confidence 2232222111 1123344666654444444455555332 23333 3332 34 4455556665
Q ss_pred hHHHHH
Q psy14416 315 AACYAA 320 (1065)
Q Consensus 315 ~A~~~A 320 (1065)
.-.+..
T Consensus 183 ~~p~~~ 188 (204)
T d1zpda3 183 TEELVK 188 (204)
T ss_dssp CHHHHH
T ss_pred Ccccch
Confidence 554433
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=5.1e-17 Score=168.02 Aligned_cols=73 Identities=27% Similarity=0.473 Sum_probs=68.5
Q ss_pred CCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 167 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 167 ~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.+.+++.+..+|+||+++|+|+|+++|++..+|+|+|||++|||||+|+.+||+|++||++|+++||+||++|
T Consensus 42 ~~~~~~~~~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~m~~~eL~ta~~~~l~i~~iV~nN~~y 114 (196)
T d1pvda3 42 NNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGY 114 (196)
T ss_dssp SSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSC
T ss_pred CCCEEEccCCcCcccccccchhHHHHHHHhcCCCCceeeccCccccccccccccccccccccceEEEEeCCcc
Confidence 3455777888999999999999999999888999999999999999999999999999999999999999988
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.59 E-value=3.6e-16 Score=159.80 Aligned_cols=103 Identities=24% Similarity=0.304 Sum_probs=80.0
Q ss_pred cccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeeec
Q psy14416 163 LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYGG 242 (1065)
Q Consensus 163 l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~g 242 (1065)
+....|++++.++ +|+||+++|+|+|+++| +|+|+|||++|||+|+|+.|||+|++|+++|+++||+||++| |
T Consensus 46 ~~~~~~~~~~~~~-~g~mG~~~p~AiGa~la----~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpv~~iV~nN~~~--g 118 (183)
T d1q6za3 46 LNMRNPGSYYFCA-AGGLGFALPAAIGVQLA----EPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY--G 118 (183)
T ss_dssp CCCCSSSCEEECT-TCCTTSHHHHHHHHHHH----CTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEEEEECSBC--H
T ss_pred Hhhcccccccccc-CCCcccchhHHHhhhhh----ccccceEEeccccccccccHHHHHHHHhCCCEEEEEEecccc--c
Confidence 3445677776654 79999999999999999 799999999999999999999999999999999999999977 7
Q ss_pred cccchhhhhhhhhccCCCcccccCccHHHHHHHH
Q psy14416 243 FDEATYAWLDIIKKSNMSEDYDEELSANQVIAQA 276 (1065)
Q Consensus 243 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~ 276 (1065)
+.+ ..|+..+..+..... ........+++.
T Consensus 119 ~~~---~~~~~~~~~~~~~~~-~~~~d~~~~a~a 148 (183)
T d1q6za3 119 ALR---WFAGVLEAENVPGLD-VPGIDFRALAKG 148 (183)
T ss_dssp HHH---HHHHHHTCCSCCSCB-CCCCCHHHHHHH
T ss_pred hhh---hhhhcccccCccccc-CCCccHHHHHHH
Confidence 655 555555444332211 122345567775
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.58 E-value=3.4e-16 Score=159.96 Aligned_cols=73 Identities=59% Similarity=1.030 Sum_probs=67.6
Q ss_pred ccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 162 LLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 162 ~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
+++...|++++.++.+|+||+++|+|+|++.+ |+|+||+++|||||+|+.+||+|++|+++|+++||+||+||
T Consensus 41 ~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~-----~~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~iiV~NN~g~ 113 (183)
T d2ji7a3 41 IVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNNGGI 113 (183)
T ss_dssp HSCCCSTTCEEECTTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEEEEECSBS
T ss_pred HhccCCCCcEEecCCccccccccchhhhhhcC-----CcceEEEEEcCcchhhchhhhhhhhhccccchhhhhhhhhh
Confidence 35567899999999999999999999988754 89999999999999999999999999999999999999987
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.57 E-value=7.1e-16 Score=158.74 Aligned_cols=135 Identities=24% Similarity=0.209 Sum_probs=95.3
Q ss_pred ccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCeeee
Q psy14416 162 LLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGIYG 241 (1065)
Q Consensus 162 ~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy~~ 241 (1065)
++....|.+++.+..+|+||+++|+|+|+++| +|+|+||+++|||+|+|+.+||+|++||++|+++||+||++|
T Consensus 38 ~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la----~p~~~vi~i~GDG~f~~~~~el~t~~~~~l~~~iiv~nN~~~-- 111 (192)
T d1ozha3 38 YLYTFRARQVMISNGQQTMGVALPWAIGAWLV----NPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGY-- 111 (192)
T ss_dssp TGGGCCCSEEECCCTTCCTTCHHHHHHHHHHH----STTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEEEEECSBC--
T ss_pred hcccCCCceeecccccccccccccchhHHHhh----cccccceeecccccccchhhhHHHHhhhcCceeEEEEcCCCc--
Confidence 35556788999999999999999999999999 799999999999999999999999999999999999999977
Q ss_pred ccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHh----hcCCceEEEccCC
Q psy14416 242 GFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMAC----QQEGIHYIGMRNE 313 (1065)
Q Consensus 242 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al----~~~~i~~i~~~~E 313 (1065)
++.+ ..|+..+.... .... .......++++ .|++++.. ....+|..++ ...+..+|.++=|
T Consensus 112 ~~~~---~~~~~~~~~~~-~~~~-~~~d~~~~A~a---~G~~~~~v---~~~~el~~al~~a~~~~gp~lIeV~vd 176 (192)
T d1ozha3 112 NMVA---IQEEKKYQRLS-GVEF-GPMDFKAYAES---FGAKGFAV---ESAEALEPTLRAAMDVDGPAVVAIPVD 176 (192)
T ss_dssp HHHH---HHHHHHHSSCC-SCBC-CCCCHHHHHHT---TTSEEEEC---CSGGGHHHHHHHHHHSSSCEEEEEEBC
T ss_pred cccc---cccccccCccc-cCcC-CCCCHHHHHHH---hccccEEe---CCHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 6544 33433332211 1111 12344556654 56665432 2233444443 4456666644333
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.53 E-value=1.1e-15 Score=157.69 Aligned_cols=70 Identities=26% Similarity=0.422 Sum_probs=66.0
Q ss_pred CCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCccccHHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 166 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 166 ~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
..+.+++.+..+|+||+++|+|+|++++ .|+|+||+++|||||+|+.+||+|++|+++|+++||+||++|
T Consensus 41 ~~~~~~~~~~~~g~mG~~l~~aiGa~la----~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~i~iiV~nN~~~ 110 (196)
T d1ovma3 41 PADVNFIVQPLWGSIGYTLAAAFGAQTA----CPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGY 110 (196)
T ss_dssp CSSCEEECCTTTCCTTHHHHHHHHHHHH----CTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEEEEESSSC
T ss_pred CCCCeEEeCCCCccccccchhhHHHHHh----hhccceecccccccceeecccccccccccccceEEEEecCcc
Confidence 4566788888899999999999999999 799999999999999999999999999999999999999988
|
| >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: ACDE2-like domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.39 E-value=3e-14 Score=141.58 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhcCCCEEecC------CCCCCCCCCCcccccHHH-------H
Q psy14416 487 AELKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSFNLPFLPTP------MGKGVVPDAHPNCVSAAR-------T 553 (1065)
Q Consensus 487 ~~v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~------~gkg~v~~~hpl~lg~~~-------~ 553 (1065)
+.+++++++|++||||+|++|+++.. +..++.++++++++||++|. ++||.+|++||+++|... +
T Consensus 7 e~~~~~a~~i~~AkrPvii~G~g~~~--~~~e~~~~~~~~~ipv~~T~~~~~~~~gkg~~~~~~~~~~G~~g~~g~~~~n 84 (158)
T d1ytla1 7 EKGKPVANMIKKAKRPLLIVGPDMTD--EMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDW 84 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEECSCCCH--HHHHHHHHHHTSSSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhCCCCEEEECcChHH--hHHHHHHHHHHhCcCEEecccccccccccCCCCCCCccccccccccCcHHHH
Confidence 35788999999999999999999874 45678999999999999984 689999999999988532 1
Q ss_pred ---hhhcCCCEEEEeCCcccccc-ccCCCccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 554 ---HALQNADLVLLLGARLNWIL-HFGRAPRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 554 ---~al~~aDlVI~iG~~~~~~~-~~g~~~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
+.+++|||||.+|++++... ..+.++.+.++.++|+||.+.........+ .+..+..++++.|.+.+
T Consensus 85 ~a~~~~~~aDLvi~iG~~~~~~~~~~~~~~~~~~~~k~I~Id~~~~~~~~~~~~--~l~~~~~~~~~~L~~ll 155 (158)
T d1ytla1 85 KGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFG--NLWKKEEDYLKLLDEIL 155 (158)
T ss_dssp CCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECSSSCCTTSSEECC--CCGGGHHHHHHHHHHHH
T ss_pred HHhhcccCcCEEEEECCcccchhhccccccccCCCCeEEEEcCCccccccccch--hhhhhHHHHHHHHHHHH
Confidence 23358999999999986432 222334467788999998775322111111 13456677777776554
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=97.68 E-value=0.00013 Score=76.58 Aligned_cols=151 Identities=12% Similarity=0.001 Sum_probs=108.4
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-----------CCCeEEEecChhhHHHHHHHHHHhcCCcEEE
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-----------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVC 75 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-----------~~i~~v~~rhE~~A~~mA~gyar~tg~~gv~ 75 (1065)
+.++|.|+++.... .|++.+++.|+++...+.+.|.+ .++.++...+|.+|..||.|++. +|....
T Consensus 5 ~~~~GneAva~~a~-a~~~v~~~YPiTPss~i~e~l~~~~~~g~~~~~~~~~~~~~~e~E~~A~~~~~Ga~~-aG~r~~- 81 (257)
T d2c42a1 5 MTTDGNTATAHVAY-AMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALA-AGALTT- 81 (257)
T ss_dssp EEEEHHHHHHHHHH-HHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHH-TTCCEE-
T ss_pred EecchHHHHHHHHH-HcCCEEEEECCCCccHHHHHHHHHHHcCCcccCCCceEEEEecccchhHHHHHHHHh-cCCCeE-
Confidence 45689999998654 79999999999999999988753 23689999999999999999776 565544
Q ss_pred EEeCCcchhhhhHHHhhcccCCCcEEEEecCCCCCcCccCCCcccchhhhcccccce-eccCCCcccHHHHHHHHHHHhh
Q psy14416 76 LVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVELARPYCKY-SARPPNIHLIGQHVEKAVRLST 154 (1065)
Q Consensus 76 ~~t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~~g~~~~Q~~dq~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~ 154 (1065)
..|+|||+.=+...|..|...++|+++...+++....+.....+-+..-..+ -+.| .....++.++-+....|++.|.
T Consensus 82 t~ts~~Gl~~m~e~l~~a~~~~~P~V~~v~~r~~~~~~~~~~~~q~d~~~~~-~~g~~~l~~~s~QEa~d~~~~A~~lae 160 (257)
T d2c42a1 82 TFTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQDIYAAR-QTGFAMLASSSVQEAHDMALVAHLAAI 160 (257)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCCSHHHHTTT-TSSCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred EEecchHHHHHHHHHHHHHhcCCceEEEEEecCCCCCCCccccchHHHHHHH-hcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 5579999999999999999999998877765544332222111212222222 2333 4445677778888888888886
Q ss_pred cCCCcccc
Q psy14416 155 FGKPGRSL 162 (1065)
Q Consensus 155 ~~rpGP~~ 162 (1065)
..+ -|++
T Consensus 161 ~~~-~Pv~ 167 (257)
T d2c42a1 161 ESN-VPFM 167 (257)
T ss_dssp HHC-CCEE
T ss_pred HhC-CCEE
Confidence 544 2544
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=97.44 E-value=0.00022 Score=74.78 Aligned_cols=153 Identities=11% Similarity=-0.006 Sum_probs=113.1
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhc-----------CCceEEEccCCchHHHHHHHHHHHhCCCeEEE
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-----------EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCL 334 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~-----------~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~ 334 (1065)
.+++-++++... ..|++.+++.|+++.+.+.+.+.+ .+++++..-+|.+|.-++.|.+. +|. .++.
T Consensus 6 ~~~GneAva~~a-~a~~~v~~~YPiTPss~i~e~l~~~~~~g~~~~~~~~~~~~~~e~E~~A~~~~~Ga~~-aG~-r~~t 82 (257)
T d2c42a1 6 TTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALA-AGA-LTTT 82 (257)
T ss_dssp EEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHH-TTC-CEEE
T ss_pred ecchHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHHHHcCCcccCCCceEEEEecccchhHHHHHHHHh-cCC-CeEE
Confidence 456888888754 479999999999999999887632 24689999999999999999775 454 3556
Q ss_pred EeccccccccccccccccccCcceEeecCCCccCCCCCCCCCccChhhh-hcccccE-EeeCCChhhHHHHHHHHHHHhh
Q psy14416 335 VVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDHEGIGGFQECPQVEL-ARPYCKY-SARPPNIHLIGQHVEKAVRLST 412 (1065)
Q Consensus 335 ~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~~g~ga~Q~idQ~~l-~~~~~k~-s~~l~~~~~i~~~i~~A~~~A~ 412 (1065)
.|||||+.=+...+.-|...++|+++...+++....+.. .| .||.++ +.-.+.| .....++.++.+....|++.|.
T Consensus 83 ~ts~~Gl~~m~e~l~~a~~~~~P~V~~v~~r~~~~~~~~-~~-~~q~d~~~~~~~g~~~l~~~s~QEa~d~~~~A~~lae 160 (257)
T d2c42a1 83 FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALS-IF-GDHQDIYAARQTGFAMLASSSVQEAHDMALVAHLAAI 160 (257)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBC-CS-CCSHHHHTTTTSSCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred EecchHHHHHHHHHHHHHhcCCceEEEEEecCCCCCCCc-cc-cchHHHHHHHhcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 789999998999999999999999988887765543211 11 233322 2223444 4456788899999999999997
Q ss_pred cCCCCEEEEecC
Q psy14416 413 FGKPGVSYLDFP 424 (1065)
Q Consensus 413 ~~~~GPV~L~iP 424 (1065)
..+- ||.+...
T Consensus 161 ~~~~-Pv~~~~D 171 (257)
T d2c42a1 161 ESNV-PFMHFFD 171 (257)
T ss_dssp HHCC-CEEEEEE
T ss_pred HhCC-CEEEEec
Confidence 5443 7776654
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=6.9e-05 Score=81.54 Aligned_cols=120 Identities=19% Similarity=0.200 Sum_probs=82.3
Q ss_pred cccCCCcchhHHHHHHhhhcccC----------CCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 176 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~~----------p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
.-|++|+|++.|+|.+++..... .+++|+|++|||.++=. -..+..+..++|+-+++|+||+++ -.
T Consensus 111 stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~~--~~ 188 (331)
T d2r8oa2 111 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI--SI 188 (331)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE--ET
T ss_pred CcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhhh--cc
Confidence 36899999999999999865321 36899999999998764 566778899999888888877744 11
Q ss_pred ccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCCchHHHHHHHH
Q psy14416 244 DEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNEQAACYAAQAI 323 (1065)
Q Consensus 244 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E~~A~~~A~g~ 323 (1065)
+. ..... . .+-+.+.++..|-+.+-.+-|.....+..+ .--
T Consensus 189 ~g-------------~~~~~-~----~~~~~~rf~afGw~vi~~~dghd~~~i~~A---------------------~~~ 229 (331)
T d2r8oa2 189 DG-------------HVEGW-F----TDDTAMRFEAYGWHVIRDIDGHDAASIKRA---------------------VEE 229 (331)
T ss_dssp TE-------------EGGGT-C----CCCHHHHHHHTTCEEEEEEETTCHHHHHHH---------------------HHH
T ss_pred cc-------------ccccc-c----chhHHHHHHHcCCeeecccccchHHHHHHH---------------------HHH
Confidence 11 00000 1 123456788888887766666655444433 333
Q ss_pred HHH-hCCCeEEEEe
Q psy14416 324 GYL-TKKPGVCLVV 336 (1065)
Q Consensus 324 ar~-tgkpgv~~~t 336 (1065)
++. ++||.+++|.
T Consensus 230 a~~~~~kP~~Ii~~ 243 (331)
T d2r8oa2 230 ARAVTDKPSLLMCK 243 (331)
T ss_dssp HHHCCSSCEEEEEE
T ss_pred HHhhcCCCccceee
Confidence 453 7899999985
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=97.28 E-value=0.00032 Score=77.90 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=79.0
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
++.|||.|.....+.+..+ ++.+.++++||+||.. |...... ...-...|..++..+.....+..|...+|.+
T Consensus 174 ~~gGDG~~~dIG~~~L~~A-----~~rg~nit~ivlDNe~-Y~nTGgQ-~S~~TP~Ga~t~ttp~Gk~~~kkdi~~ia~a 246 (447)
T d2c42a2 174 IFGGDGWAYDIGYGGLDHV-----LASGEDVNVFVMDTEV-YSNTGGQ-SSKATPTGAVAKFAAAGKRTGKKDLARMVMT 246 (447)
T ss_dssp EEEEHHHHHTTTHHHHHHH-----HHTTCSCEEEEEECSS-BTTTTCB-CCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred EEecCccHhhcChHHHHHH-----HHcCCCceEEEEcCcc-ccCCCCc-CCCCCcCCeecccccCCCcCCCCCHHHHHHH
Confidence 9999998845556788888 8889999999999965 5532211 0001112333444444455567899999999
Q ss_pred cCCCeEe-e---CCHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q psy14416 1011 FGHDGYL-C---TTVPQIKQAMKKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1011 ~g~~~~~-~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 1047 (1065)
+|+.|+. + ...+++.++++++++. ++|++|++..+-
T Consensus 247 ~g~~YVA~~s~~~~~~~l~kaikeA~~~-~GpS~I~~~sPC 286 (447)
T d2c42a2 247 YGYVYVATVSMGYSKQQFLKVLKEAESF-PGPSLVIAYATC 286 (447)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHHS-SSCEEEEEECCC
T ss_pred CCCceEEEEeCCCCHHHHHHHHHHHHhC-CCCeEEEeecCC
Confidence 9999873 3 3568999999999987 999999998853
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=97.22 E-value=0.00012 Score=80.70 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=58.6
Q ss_pred EEecccccc--Ccc-hhhHHHhhccCccccCCCEEEEEEcCCcccC-CCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--GFD-ETTYASIVESGEVTTVLPVILVIVNNNGIYG-GFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+.. .|+ ..+++.. .++|++.|+-||+ |. ..+... . ....++.+
T Consensus 166 ~~~GDGa~~eG~f~Ealn~A~~-------~~lPvifv~eNN~--~aist~~~~--~----------------~~~~~~~~ 218 (362)
T d1umda_ 166 CTFGDGATSEGDWYAGINFAAV-------QGAPAVFIAENNF--YAISVDYRH--Q----------------THSPTIAD 218 (362)
T ss_dssp EEEETGGGGSHHHHHHHHHHHH-------TTCSEEEEEEECS--EETTEEHHH--H----------------CSSSCSGG
T ss_pred eeccCCcccCCchHHHHHHhhh-------ccCCeeeeeeecc--ccccccccc--c----------------cccchhhh
Confidence 899999984 222 3366655 8999999999884 22 111110 0 12234567
Q ss_pred HHHHcCCCeEeeCC--HHHHHHHHHHH----HhcCCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCTT--VPQIKQAMKKC----LQTTTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~~--~~~l~~~~~~~----~~~~~~~~li~~~~~~ 1047 (1065)
.|++||+.+++|.- +.++.++++++ .+. .+|+|||+.+-+
T Consensus 219 ~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g-~gP~lIE~~tyR 264 (362)
T d1umda_ 219 KAHAFGIPGYLVDGMDVLASYYVVKEAVERARRG-EGPSLVELRVYR 264 (362)
T ss_dssp GGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTT-CCCEEEEEECCC
T ss_pred hhhhheeeeeEeccchHHHHHHHHHHHHHHHHhc-CCCEEEEccccc
Confidence 88999999999864 44555555544 443 789999999955
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.00051 Score=76.16 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=94.6
Q ss_pred CCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEE
Q psy14416 156 GKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVI 233 (1065)
Q Consensus 156 ~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV 233 (1065)
||.|+.|+..... .++. ..+.+|..+|.|+|++++.+....++-++|+.|||+..=. -..|-.+.-++||+++||
T Consensus 138 Grggs~H~~~~~~-~~~~--~~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~ 214 (395)
T d2bfda1 138 GRQMPVHYGCKER-HFVT--ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 214 (395)
T ss_dssp TCSCSSCCCBTTT-TBCC--CCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccccccccc-cccc--ccccccccccHHHHHHHHhhhcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEE
Confidence 6777777643222 2222 2467899999999999998888889999999999997543 566778889999999999
Q ss_pred EcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccCC
Q psy14416 234 VNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRNE 313 (1065)
Q Consensus 234 ~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~E 313 (1065)
-||+ | ++..+. . ..+..+.+++.-+..|+..+- +-|.....+..++.
T Consensus 215 eNN~-y--aist~~--------~---------~~~~~~~i~~ra~~~gi~~~~-vDG~Dv~aV~~a~~------------ 261 (395)
T d2bfda1 215 RNNG-Y--AISTPT--------S---------EQYRGDGIAARGPGYGIMSIR-VDGNDVFAVYNATK------------ 261 (395)
T ss_dssp EECS-E--ETTEEG--------G---------GTCSSSTTGGGTGGGTCEEEE-EETTCHHHHHHHHH------------
T ss_pred Eecc-c--cccccc--------c---------hhhcchhHHHhhhccccceeE-EecCcHHHHHHHHH------------
Confidence 9996 4 332100 0 011112234444567777654 56777666654433
Q ss_pred chHHHHHHHHHHHhCCCeEEEEe
Q psy14416 314 QAACYAAQAIGYLTKKPGVCLVV 336 (1065)
Q Consensus 314 ~~A~~~A~g~ar~tgkpgv~~~t 336 (1065)
-|.-++|..++|.++-+.
T Consensus 262 -----~A~~~~R~g~gP~lIE~~ 279 (395)
T d2bfda1 262 -----EARRRAVAENQPFLIEAM 279 (395)
T ss_dssp -----HHHHHHHHHTCCEEEEEE
T ss_pred -----HhhhhhhccCCceEEEEe
Confidence 355677888889887764
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=97.17 E-value=0.00029 Score=77.41 Aligned_cols=141 Identities=15% Similarity=0.099 Sum_probs=91.8
Q ss_pred cCCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEE
Q psy14416 155 FGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILV 232 (1065)
Q Consensus 155 ~~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpiviv 232 (1065)
.||-|+.|+..... .++. ..+.+|..+|.|+|++++.+....++-+||+.|||+..-. -..|..+.-+++|+++|
T Consensus 119 ~Grggs~H~~~~~~-~~~~--~~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv 195 (362)
T d1umda_ 119 KGRQMPEHPGSKAL-NFFT--VASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFI 195 (362)
T ss_dssp TTCSCSSCCCBTTT-TBCC--CCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEE
T ss_pred cccccccccccccc-Cccc--ccccccccchHHHHHHHhhhcccccceeeeeccCCcccCCchHHHHHHhhhccCCeeee
Confidence 36777777743222 2222 2467899999999999999998999999999999998543 56677888999999999
Q ss_pred EEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccC
Q psy14416 233 IVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRN 312 (1065)
Q Consensus 233 V~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~ 312 (1065)
|-||. | ++..+.. .... ...+.+.-+..|+..+- +.|.....+..+..
T Consensus 196 ~eNN~-~--aist~~~---~~~~--------------~~~~~~~a~~~gi~~~~-vDGnDv~~v~~a~~----------- 243 (362)
T d1umda_ 196 AENNF-Y--AISVDYR---HQTH--------------SPTIADKAHAFGIPGYL-VDGMDVLASYYVVK----------- 243 (362)
T ss_dssp EEECS-E--ETTEEHH---HHCS--------------SSCSGGGGGGTTSCEEE-EETTCHHHHHHHHH-----------
T ss_pred eeecc-c--ccccccc---cccc--------------cchhhhhhhhheeeeeE-eccchHHHHHHHHH-----------
Confidence 99996 5 3322111 0000 00122333345555533 56776666654433
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEe
Q psy14416 313 EQAACYAAQAIGYLTKKPGVCLVV 336 (1065)
Q Consensus 313 E~~A~~~A~g~ar~tgkpgv~~~t 336 (1065)
-|.-++|..++|.++-+.
T Consensus 244 ------~Ai~~~R~g~gP~lIE~~ 261 (362)
T d1umda_ 244 ------EAVERARRGEGPSLVELR 261 (362)
T ss_dssp ------HHHHHHHTTCCCEEEEEE
T ss_pred ------HHHHHHHhcCCCEEEEcc
Confidence 345577777788887764
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=97.12 E-value=0.00065 Score=75.43 Aligned_cols=142 Identities=19% Similarity=0.080 Sum_probs=91.0
Q ss_pred cCCCcccccccCCCccccccccccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEE
Q psy14416 155 FGKPGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILV 232 (1065)
Q Consensus 155 ~~rpGP~~l~~~~p~~~l~~~~~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpiviv 232 (1065)
.||.||.|+.....+ ++ +..+.+|..+|-|+|++++.+....++-+||++|||+..-. -..|-.+.-+++|+++|
T Consensus 161 ~Gr~~~~h~~~~~~~-~~--~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv 237 (407)
T d1qs0a_ 161 KGRQLPIMYSVREAG-FF--TISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILN 237 (407)
T ss_dssp TTCSCTTCCCBGGGT-BC--CCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCccccccccccc-ee--ccccccccccchhhhhHHHHhhccCcceecccccccccccchHHHHHHHHhccCcceEEE
Confidence 367788887543222 22 22467899999999999999888899999999999995543 45677888999999999
Q ss_pred EEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHHHHHhcCceEEEeecCCchhhhHHHhhcCCceEEEccC
Q psy14416 233 IVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQEGIHYIGMRN 312 (1065)
Q Consensus 233 V~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~i~~i~~~~ 312 (1065)
|-||. | ++..+.- .... ....+++.-+..|+.. +-+-|.....++.++.
T Consensus 238 ~eNN~-~--aist~~~------~~~~----------~~~~~~~ra~~~Gi~~-~~VDGnD~~avy~a~~----------- 286 (407)
T d1qs0a_ 238 VVNNQ-W--AISTFQA------IAGG----------ESTTFAGRGVGCGIAS-LRVDGNDFVAVYAASR----------- 286 (407)
T ss_dssp EEECS-E--ETTEEGG------GGTT----------TTCCSTHHHHHTTCEE-EEEETTCHHHHHHHHH-----------
T ss_pred EEEec-c--cccccch------hhhc----------cchhHHHHHHhcCcce-EEeccccHHHHHHHHH-----------
Confidence 99996 4 3321000 0000 0111333334456654 4445666655554433
Q ss_pred CchHHHHHHHHHHHhCCCeEEEEe
Q psy14416 313 EQAACYAAQAIGYLTKKPGVCLVV 336 (1065)
Q Consensus 313 E~~A~~~A~g~ar~tgkpgv~~~t 336 (1065)
-|.-++|..++|.++-+.
T Consensus 287 ------~A~e~aR~g~gP~lIE~~ 304 (407)
T d1qs0a_ 287 ------WAAERARRGLGPSLIEWV 304 (407)
T ss_dssp ------HHHHHHHTTSCCEEEEEE
T ss_pred ------HHHHHHhcCCCceEEEEe
Confidence 355567777778776653
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=97.08 E-value=0.00019 Score=79.81 Aligned_cols=91 Identities=22% Similarity=0.169 Sum_probs=59.6
Q ss_pred EEecccccc--C-cchhhHHHhhccCccccCCCEEEEEEcCCc-ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--G-FDETTYASIVESGEVTTVLPVILVIVNNNG-IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
+++|||+-. . +-..+++.. +++|++.|+.||+- |. .+.. ......-++.+
T Consensus 208 ~~~GDGa~~eG~f~EalN~A~~-------~~lPvifv~eNN~~ais--t~~~-----------------~~~~~~~~~~~ 261 (407)
T d1qs0a_ 208 AWIGDGATAESDFHTALTFAHV-------YRAPVILNVVNNQWAIS--TFQA-----------------IAGGESTTFAG 261 (407)
T ss_dssp EEEETGGGGSHHHHHHHHHHHH-------HTCCEEEEEEECSEETT--EEGG-----------------GGTTTTCCSTH
T ss_pred ccccccccccchHHHHHHHHhc-------cCcceEEEEEEeccccc--ccch-----------------hhhccchhHHH
Confidence 899999873 2 234467766 89999999999942 21 1110 01112345778
Q ss_pred HHHHcCCCeEeeCC--HHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCTT--VPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~~--~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
-+++||+.+++|.- +.++-++++++++ ...+|+|||+.|-+
T Consensus 262 ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR 307 (407)
T d1qs0a_ 262 RGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307 (407)
T ss_dssp HHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred HHHhcCcceEEeccccHHHHHHHHHHHHHHHhcCCCceEEEEeeec
Confidence 89999999999864 4444455554442 23789999999954
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.79 E-value=0.00091 Score=73.39 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=53.3
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
.+.+|..+|.|+|++++.+....++-+||++|||+..=. -..|..+.-++||+++||-||+
T Consensus 138 ~~ivG~~~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~ 200 (365)
T d1w85a_ 138 QIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 200 (365)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred ccccCccccchhhHHhhhhhcccCCceeeeccCCcccchhHHHHHHHhhhcccCceEEEEEec
Confidence 467899999999999999998999999999999995433 5667788899999999999995
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00027 Score=78.46 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=61.7
Q ss_pred EEecccccc--C-cchhhHHHhhccCccccCCCEEEEEEcCCc-ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--G-FDETTYASIVESGEVTTVLPVILVIVNNNG-IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
+.+|||+.. . +-..+++.. .+||++.|+-||+- | ..+.. .....-++.+
T Consensus 184 ~~~GDGa~~eG~f~EalN~A~~-------~~lPvlfv~eNN~yai--st~~~------------------~~~~~~~i~~ 236 (395)
T d2bfda1 184 CYFGEGAASEGDAHAGFNFAAT-------LECPIIFFCRNNGYAI--STPTS------------------EQYRGDGIAA 236 (395)
T ss_dssp EEEETTGGGSHHHHHHHHHHHH-------TTCCEEEEEEECSEET--TEEGG------------------GTCSSSTTGG
T ss_pred cccCCCCccchhHHHHHHHHhh-------cCCceEEEEEeccccc--ccccc------------------hhhcchhHHH
Confidence 899999984 2 223466666 89999999988842 2 11110 0012335677
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHHHHHHhc---CCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAMKKCLQT---TTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~~~~~~~---~~~~~li~~~~~~ 1047 (1065)
.+++||+.+++|. ++.++.++++++.+. ..+|+|||+.|-+
T Consensus 237 ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR 282 (395)
T d2bfda1 237 RGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 282 (395)
T ss_dssp GTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred hhhccccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeec
Confidence 8899999999985 566776776666542 3789999999965
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.72 E-value=0.00035 Score=76.76 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=59.7
Q ss_pred EEecccccc--C-cchhhHHHhhccCccccCCCEEEEEEcCCc-ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--G-FDETTYASIVESGEVTTVLPVILVIVNNNG-IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+.. . +-..+++.. .+||++.||-||+- | ..+.. ......++..
T Consensus 166 ~~~GDGa~~eG~f~EalN~A~~-------~~lPvlfv~eNN~~ai--st~~~------------------~~~~~~~~~~ 218 (365)
T d1w85a_ 166 TYTGDGGTSQGDFYEGINFAGA-------FKAPAIFVVQNNRFAI--STPVE------------------KQTVAKTLAQ 218 (365)
T ss_dssp EEEETGGGGSHHHHHHHHHHHH-------TTCCEEEEEEECSEET--TEEGG------------------GTCSCSCSGG
T ss_pred eeccCCcccchhHHHHHHHhhh-------cccCceEEEEEecccc--ccccc------------------ccccccchhh
Confidence 999999973 2 224466666 89999999999942 2 11110 0112334566
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHHHHHHh---cCCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAMKKCLQ---TTTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~~~~~~---~~~~~~li~~~~~~ 1047 (1065)
-+.+||+.+++|. ++.++.++++++.+ ...+|+|||+.+-+
T Consensus 219 r~~~~Gi~~~~vDG~D~~~v~~a~~~A~~~~R~g~gP~lie~~tyR 264 (365)
T d1w85a_ 219 KAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 264 (365)
T ss_dssp GGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred hcccccCceEEEecchhHHHHHHHHHHHHHhhcCCccEEEEeeccc
Confidence 7899999999997 45555555555543 23789999999965
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.0007 Score=73.52 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=50.8
Q ss_pred cccCCCcchhHHHHHHhhhccc----------CCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCee
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY----------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNGI 239 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~----------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~gy 239 (1065)
.-|++|+|++.|+|.+++.+.. .-+++|+|++|||.++=. -+.+..|.+++|.-+++|+|+++.
T Consensus 112 stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~~ 187 (335)
T d1gpua1 112 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI 187 (335)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred CCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEecccc
Confidence 3689999999999999986421 236899999999998764 566778899999877777776643
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=96.64 E-value=0.0011 Score=72.09 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=50.3
Q ss_pred cccCCCcchhHHHHHHhhhccc----------CCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY----------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~----------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
.-|++|+|++.|+|.+++.... .-+++|+|++|||+++=. -+.+..+..++|+-+++|+||+
T Consensus 112 stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N 185 (336)
T d1r9ja2 112 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSN 185 (336)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred cccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHHhhcCCEEEEEecc
Confidence 3689999999999999985421 125789999999998865 5677789999998888888776
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=96.60 E-value=0.0013 Score=71.43 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=49.7
Q ss_pred cccCCCcchhHHHHHHhhhccc----------CCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCCe
Q psy14416 176 TFGTMGVGLGFALAAALYCNHY----------APGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNNG 238 (1065)
Q Consensus 176 ~~gsmG~gl~~AlGaala~~~~----------~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~g 238 (1065)
.-|++|+|++.|+|.+++.+.. .-+++|+|++|||.++=. -+.+..+..++|.-+++|+|++.
T Consensus 116 stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~ 190 (338)
T d1itza1 116 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNH 190 (338)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred cCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhc
Confidence 3589999999999999985431 236799999999998765 56677889999986666666653
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0014 Score=70.99 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=67.2
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||-+ .-.+.+..+ +-..+.+|+=.|+|+|||++ . .+ +. +......+..+--++
T Consensus 150 ~l~GDGel--~EG~~wEA~--~~A~~~kL~nLi~i~D~N~~-~-~~----------g~-------~~~~~~~~~~~rf~a 206 (331)
T d2r8oa2 150 AFMGDGCM--MEGISHEVC--SLAGTLKLGKLIAFYDDNGI-S-ID----------GH-------VEGWFTDDTAMRFEA 206 (331)
T ss_dssp EEECHHHH--HSHHHHHHH--HHHHHTTCTTEEEEEEECSE-E-TT----------EE-------GGGTCCCCHHHHHHH
T ss_pred Eecccccc--cccchhHhh--hhcchhcccceeeHHhhhhh-c-cc----------cc-------cccccchhHHHHHHH
Confidence 99999999 444433222 11256787645555666663 1 00 10 111123567778899
Q ss_pred cCCCeEee---CCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--cchhhhh
Q psy14416 1011 FGHDGYLC---TTVPQIKQAMKKCLQTTTRPSLINILINPSADRK--PQNFSWL 1059 (1065)
Q Consensus 1011 ~g~~~~~~---~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~--~~~~~~~ 1059 (1065)
||.+...+ ++.++|.+|++++.+.+++|++|.+.|-.....+ ...-.|+
T Consensus 207 fGw~vi~~~dghd~~~i~~A~~~a~~~~~kP~~Ii~~TikGkG~~~~e~~~~~H 260 (331)
T d2r8oa2 207 YGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSH 260 (331)
T ss_dssp TTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCTTTTTSGGGT
T ss_pred cCCeeecccccchHHHHHHHHHHHHhhcCCCccceeeeeeecCCcccCCCchhh
Confidence 99997753 5778899999999876689999999997655442 2234454
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0026 Score=69.69 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=53.9
Q ss_pred ccCCCcchhHHHHHHhhhcccCCCCeEEEEeCCCCcccc--HHHHHHhhhcCCCEEEEEEcCC
Q psy14416 177 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS--GMELETLVRYRLPVILVIVNNN 237 (1065)
Q Consensus 177 ~gsmG~gl~~AlGaala~~~~~p~rrvV~l~GDGsf~m~--~~eL~t~vr~~lpivivV~NN~ 237 (1065)
.+.+|..+|.|+|++++.+....++-++|+.|||+..=. -..|..+.-++||+++||-||+
T Consensus 135 ~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~ 197 (361)
T d2ozla1 135 NGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR 197 (361)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred cccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhhhhhccCceEEEEEeCC
Confidence 467899999999999999998999999999999997653 5667788899999999999995
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0024 Score=69.93 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=50.2
Q ss_pred EEecccccc--Ccc-hhhHHHhhccCccccCCCEEEEEEcCCc-ccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHH
Q psy14416 931 IVNNNGIYG--GFD-ETTYASIVESGEVTTVLPVILVIVNNNG-IYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEK 1006 (1065)
Q Consensus 931 ~~~gd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~v~nn~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
++.|||+.. .|+ ..+++.. .+||++.||-||+= ++ .+.... + ...+..+
T Consensus 163 ~~~GDGa~~eG~f~Ealn~A~~-------~~lPvifv~eNN~yais--t~~~~~---------------~---~~~~~~~ 215 (361)
T d2ozla1 163 TLYGDGAANQGQIFEAYNMAAL-------WKLPCIFICENNRYGMG--TSVERA---------------A---ASTDYYK 215 (361)
T ss_dssp EEEETTGGGCHHHHHHHHHHHH-------TTCCEEEEEEECSEETT--EEHHHH---------------C---SCCCGGG
T ss_pred EEecCCCccCcchhhhhhhhhh-------ccCceEEEEEeCCcccC--CCchhc---------------c---ccccccc
Confidence 999999984 222 3366655 89999999988842 21 121100 0 0111111
Q ss_pred HHHHcCCCeEeeC--CHHHHHHHH----HHHHhcCCCCEEEEEEeCC
Q psy14416 1007 MMAVFGHDGYLCT--TVPQIKQAM----KKCLQTTTRPSLINILINP 1047 (1065)
Q Consensus 1007 ~~~~~g~~~~~~~--~~~~l~~~~----~~~~~~~~~~~li~~~~~~ 1047 (1065)
.++|+.+++|. ++.+..+++ +.+.+. .+|+|||+.+-+
T Consensus 216 --~~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g-~gP~liE~~TyR 259 (361)
T d2ozla1 216 --RGDFIPGLRVDGMDILCVREATRFAAAYCRSG-KGPILMELQTYR 259 (361)
T ss_dssp --TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTT-CCCEEEEEECCC
T ss_pred --cccccceEEeccCCchHHHHHHHHHHHHHhcc-CCCEEEEEeeec
Confidence 35566777764 333444444 444443 789999999944
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=95.91 E-value=0.0023 Score=69.28 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMAV 1010 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1065)
+++|||-+ +-.+....+ +-..+.+|+-.|+|+|||.+ .++. .+.....-|..+--++
T Consensus 151 ~~~GDGel--~EG~~~EA~--~~A~~~~L~nLi~i~D~N~~--~idg-----------------~~~~~~~~d~~~rf~a 207 (336)
T d1r9ja2 151 VYCGDGCL--MEGVCQEAL--SLAGHLALEKLIVIYDSNYI--SIDG-----------------STSLSFTEQCHQKYVA 207 (336)
T ss_dssp EEECHHHH--HSHHHHHHH--HHHHHHTCTTEEEEEEECSB--CSSS-----------------BGGGTCCCCHHHHHHH
T ss_pred Eeccchhh--chHHHHHHH--HHHHHhhcCCEEEEEecccc--cccc-----------------cccccchhHHHHHHHH
Confidence 99999999 443322222 11266788755666666664 1111 1122234678888899
Q ss_pred cCCCeEeeCC----HHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1011 FGHDGYLCTT----VPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1011 ~g~~~~~~~~----~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
||.+...|.. .+.+..+++++...+++|++|.+.|-....
T Consensus 208 fGW~vi~Vdgg~~d~~~~~~~~~~a~~~~~kP~~Ii~kTiiG~G 251 (336)
T d1r9ja2 208 MGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFG 251 (336)
T ss_dssp TTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTT
T ss_pred hccceEEEecCchHHHHHHHHhhhhhhccCCCccceEEEEEeec
Confidence 9999999954 346667777776666799999999966543
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=95.89 E-value=0.0024 Score=69.20 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=68.5
Q ss_pred EEeccccccCcchhhHHHhhccCccccCCC-EEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccHHHHHH
Q psy14416 931 IVNNNGIYGGFDETTYASIVESGEVTTVLP-VILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRYEKMMA 1009 (1065)
Q Consensus 931 ~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1065)
+++|||-. +-.+.+..+ +-..+.+|. +++|+ |+|++ + .+ + .+......|..+--+
T Consensus 155 vl~GDGel--~EG~~wEA~--~~A~~~~L~NLi~i~-D~N~~-~-~d----------g-------~~~~~~~~~~~~k~~ 210 (338)
T d1itza1 155 VILGDGCQ--MEGIANEAC--SLAGHWGLGKLIAFY-DDNHI-S-ID----------G-------DTEIAFTEDVSTRFE 210 (338)
T ss_dssp EEECHHHH--HSHHHHHHH--HHHHHTTCTTEEEEE-EECSE-E-TT----------E-------EGGGTCCSCHHHHHH
T ss_pred EEeCcccc--chHHHHHHH--hHhhhhhccceeeee-hhhcc-c-cc----------c-------ccccccCCCHHHHHH
Confidence 99999999 444433322 112667886 55554 55453 1 00 1 011223457888899
Q ss_pred HcCCCeEeeCC----HHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--cchhhhhH
Q psy14416 1010 VFGHDGYLCTT----VPQIKQAMKKCLQTTTRPSLINILINPSADRK--PQNFSWLT 1060 (1065)
Q Consensus 1010 ~~g~~~~~~~~----~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~--~~~~~~~~ 1060 (1065)
+||.+...|.. .+++..+++++.+.+++|++|-+.|-.....+ ...-.|+.
T Consensus 211 a~Gw~vi~v~~g~~~~~~i~~a~~~a~~~~~kPt~Iia~TikGkG~~~~e~~~~~Hg 267 (338)
T d1itza1 211 ALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHG 267 (338)
T ss_dssp HTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCTTTTTSGGGTS
T ss_pred hcCCeEEEeeCCchhHHHHHHHHHHHHHccCCCceeEeecCcccCcCccCCCcchhh
Confidence 99999988754 68899999998876689999999997655432 22345654
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.002 Score=69.72 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=84.2
Q ss_pred cceeeecceEEEEeccccccccccchhhhhheeccccc------cccccEEEEEccCcccCCccccccceeccccceeee
Q psy14416 851 GEVTTVLPVILVIVNNNGIYGGFDETTYASIVESGEVT------TVLPVILVIVNNNGIYGGFDETTYASIVESGEVTTV 924 (1065)
Q Consensus 851 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1065)
|++...+|-+-..-|++|-+++.+. |.+++.+.... ...-+..|+
T Consensus 100 ghp~~~~pgie~stGsLG~Gl~~av--G~A~a~k~~~~~~~~~~~~~~~~~v~--------------------------- 150 (335)
T d1gpua1 100 GHPEFELPGVEVTTGPLGQGISNAV--GMAMAQANLAATYNKPGFTLSDNYTY--------------------------- 150 (335)
T ss_dssp SSCCTTSTTCCSCCCSTTHHHHHHH--HHHHHHHHHHHHHCBTTBCCCCCCEE---------------------------
T ss_pred CCCCCCCCCeEeCCCChhHHHHHHH--HHHHHhHhhhcccccCCcCCCCCcEE---------------------------
Confidence 3444445655555567777766666 66666532110 011245677
Q ss_pred ccceEEEEeccccccCcchhhHHHhhccCccccCCCEEEEEEcCCcccCCCchhhHhHHhhcCCcccCCCCCCCCCCccH
Q psy14416 925 LPVILVIVNNNGIYGGFDETTYASIVESGEVTTVLPVILVIVNNNGIYGGFDEATYASIVESGEVTTVSPPTSLGPSLRY 1004 (1065)
Q Consensus 925 ~~~~~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1065)
+++|||-+ +-.+....+ +=..+++|.=.|+|+|+|++ + ++ +. +.....-|.
T Consensus 151 ------~l~GDGel--~EG~~~EA~--~~A~~~~L~NLi~i~D~N~~-~-~d----------g~-------~~~~~~~~~ 201 (335)
T d1gpua1 151 ------VFLGDGCL--QEGISSEAS--SLAGHLKLGNLIAIYDDNKI-T-ID----------GA-------TSISFDEDV 201 (335)
T ss_dssp ------EEECHHHH--HSHHHHHHH--HHHHHTTCTTEEEEEEECSE-E-TT----------EE-------GGGTCCCCH
T ss_pred ------EEecchhh--chhhhhhhH--hHhhhhccCCEEEEEecccc-c-cc----------cc-------ccccccCCH
Confidence 99999999 444433322 11266788544444555553 1 11 10 111122467
Q ss_pred HHHHHHcCCCeEeeC----CHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC
Q psy14416 1005 EKMMAVFGHDGYLCT----TVPQIKQAMKKCLQTTTRPSLINILINPSAD 1050 (1065)
Q Consensus 1005 ~~~~~~~g~~~~~~~----~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 1050 (1065)
.+--++||.+...|. +...+..++.++.+..++|++|.+.|-....
T Consensus 202 ~~~f~a~GW~vi~vdg~~~d~~~~~~~~~~~~~~~~KPt~Iia~TikGkG 251 (335)
T d1gpua1 202 AKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 251 (335)
T ss_dssp HHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTTT
T ss_pred HHHHHhCCCcEEEEcCCchhHHHHHHHHhhhhcccCCCcceEEeeccCCc
Confidence 888899999999884 3456677777777666899999999965544
|
| >d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: C-terminal domain of the electron transfer flavoprotein alpha subunit domain: C-terminal domain of the electron transfer flavoprotein alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.012 Score=53.44 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=81.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCC
Q psy14416 501 APLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRA 578 (1065)
Q Consensus 501 rPvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~ 578 (1065)
+.++-+|.|....+..+.+++||+++|.-+-+|-. -.|.+|.+ ..+|...... .|++.|.+|-+=....+.|.
T Consensus 9 ~ivV~~GrG~~~~e~~~~~~~lA~~lga~vg~SR~~vd~gw~~~~--~qIG~SG~~V--~P~lyia~GISGa~QH~~Gi- 83 (124)
T d1efva2 9 KVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPND--MQVGQTGKIV--APELYIAVGISGAIQHLAGM- 83 (124)
T ss_dssp SEEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSTTSBCC--CCSEEEEESCCCCHHHHTTT-
T ss_pred CEEEECCCCcCCHHHHHHHHHHHHHhCCeeeEeehhhhCCCcccc--eeecccceEe--CCcEEEEecchhHHHHHhhc-
Confidence 34666777876667788999999999999887643 23555543 4566544422 89999999977555444443
Q ss_pred ccccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 579 PRFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 579 ~~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
.....+|-||.|+.. --+...|..+++|..++|.+|.++++
T Consensus 84 ---~~s~~IvAIN~D~~A-pIf~~aD~giVgD~~evlp~L~e~lk 124 (124)
T d1efva2 84 ---KDSKTIVAINKDPEA-PIFQVADYGIVADLFKVVPEMTEILK 124 (124)
T ss_dssp ---TTCSEEEEEESCTTC-GGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred ---cCCCEEEEEeCCCCC-CccccCCEEEeccHHHHHHHHHHHhC
Confidence 244578999999853 23455799999999999999988763
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.049 Score=53.94 Aligned_cols=160 Identities=13% Similarity=-0.029 Sum_probs=101.2
Q ss_pred ccCccHHHHHHHHHHhcCceEEEeecCCchhhhH---HH--------hhc-CCceEE-EccCCchHHHHHHHHHHHhCCC
Q psy14416 264 DEELSANQVIAQALKFQGIEYVFGIVGIPVIELA---MA--------CQQ-EGIHYI-GMRNEQAACYAAQAIGYLTKKP 330 (1065)
Q Consensus 264 ~~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~---~a--------l~~-~~i~~i-~~~~E~~A~~~A~g~ar~tgkp 330 (1065)
...+..+......|.+..-+-+.|.......... .. +.+ ..=|++ .-.-|++++-+|.|+|+.-+.+
T Consensus 19 ~aTR~a~g~~L~~la~~~p~lv~~sADL~~St~t~~~~~~~f~~~~~~~~~~p~R~i~~GIaEq~m~~iaaGlA~~G~~~ 98 (197)
T d1gpua2 19 VATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANY 98 (197)
T ss_dssp BCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHhhChhhcccccccCCccccccccccccccccccccCCCCceeecccchhhHHHHHHHHHHcCCce
Confidence 3445566666777777666666666553322211 00 111 112444 5688999999999999764445
Q ss_pred eEEEEeccccccccccccccccccCcceEeecCCCccCC-CCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHH
Q psy14416 331 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVR 409 (1065)
Q Consensus 331 gv~~~tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~~-~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~ 409 (1065)
-.+..|..+=..-....+..+-+.+.|++++........ .+-..+|.+++..++|.+-....-.++ +. ..+..|++
T Consensus 99 ~p~~~t~~~f~~~~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn~~v~~Pa--D~-~e~~~a~~ 175 (197)
T d1gpua2 99 KPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPA--DG-NEVSAAYK 175 (197)
T ss_dssp EEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCC--SH-HHHHHHHH
T ss_pred eEEEEeehhhhhhhHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHHHhcCCCcEEEecC--CH-HHHHHHHH
Confidence 566666666555566666666677889888865554433 334578999999999999876554432 21 23445677
Q ss_pred HhhcCCCCEEEEecChh
Q psy14416 410 LSTFGKPGVSYLDFPAN 426 (1065)
Q Consensus 410 ~A~~~~~GPV~L~iP~D 426 (1065)
.|.....||+||.++..
T Consensus 176 ~a~~~~~gP~yiRl~R~ 192 (197)
T d1gpua2 176 NSLESKHTPSIIALSRQ 192 (197)
T ss_dssp HHHHCSSCCEEEECCSS
T ss_pred HHHHcCCCCEEEEecCC
Confidence 66656679999998743
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=94.51 E-value=0.05 Score=53.65 Aligned_cols=157 Identities=10% Similarity=-0.079 Sum_probs=99.6
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhhH------HHhhc-CCceEE-EccCCchHHHHHHHHHHHhCCCeEEEEe
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIELA------MACQQ-EGIHYI-GMRNEQAACYAAQAIGYLTKKPGVCLVV 336 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l~------~al~~-~~i~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~t 336 (1065)
..+..+......|.+..-+-+.+.......... +.+.+ ..=|+| ...-|++++-+|.|+|........+..|
T Consensus 20 AtR~a~g~~L~~la~~~~~iv~~sADL~~St~t~~~~~~~~~~~~~p~r~i~~GIaEq~m~~iAaGlA~~~~G~~p~~~t 99 (192)
T d1itza2 20 ATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCAT 99 (192)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHhhCchhheeccccCCCcCcccccccccccccchhccceeceecchHHHHHHHHHHhcCCCEEEEEE
Confidence 345566667777777776666665543222111 11111 111444 5678999999999999853334455566
Q ss_pred ccccccccccccccccccCcceEeecCCCccC-CCCCCCCCccChhhhhcccccEEeeCC-ChhhHHHHHHHHHHHhhcC
Q psy14416 337 SGPGLLHTFGGMANAQINCWPMLVIGGSCAQD-HEGIGGFQECPQVELARPYCKYSARPP-NIHLIGQHVEKAVRLSTFG 414 (1065)
Q Consensus 337 sGpG~~N~~~av~eA~~~~vPLlvItg~~p~~-~~g~ga~Q~idQ~~l~~~~~k~s~~l~-~~~~i~~~i~~A~~~A~~~ 414 (1065)
..+=..-....+..+-..+.|++++....... -.+-..+|.+.+..++|.+-....-.+ +.. .+..+++.|...
T Consensus 100 f~~F~~~~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iPn~~v~~P~d~~----e~~~~~~~a~~~ 175 (192)
T d1itza2 100 FFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGN----ETAGAYKVAVLN 175 (192)
T ss_dssp EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCCSHH----HHHHHHHHHHHC
T ss_pred EhhhhhhccchhhhhccccccceEEEecCCcccccCCcccHHHHHHHHHhCcCCceEEecCCHH----HHHHHHHHHHHc
Confidence 66655556666667777788888765555443 334456899999999999988766544 333 345555555556
Q ss_pred CCCEEEEecCh
Q psy14416 415 KPGVSYLDFPA 425 (1065)
Q Consensus 415 ~~GPV~L~iP~ 425 (1065)
..||+||-++.
T Consensus 176 ~~gP~yiRl~R 186 (192)
T d1itza2 176 RKRPSILALSR 186 (192)
T ss_dssp TTSCEEEEECS
T ss_pred CCCCEEEEEcC
Confidence 67999999974
|
| >d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: C-terminal domain of the electron transfer flavoprotein alpha subunit domain: C-terminal domain of the electron transfer flavoprotein alpha subunit species: Methylophilus methylotrophus [TaxId: 17]
Probab=94.19 E-value=0.038 Score=50.00 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=78.7
Q ss_pred cEEEEccCCCchhHHHHHHHHHhhcCCCEEecCC--CCCCCCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCc
Q psy14416 502 PLVIIGKGAAYSQAETELLSFVNSFNLPFLPTPM--GKGVVPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAP 579 (1065)
Q Consensus 502 PvIlvG~g~~~~~a~~~L~~LAe~lg~PV~tt~~--gkg~v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~ 579 (1065)
.++-+|.|....+..+.+++||+++|.-+-+|-. -.|.+|.+ ..+|.... .+..|++.|.+|-+=......|.
T Consensus 9 vVV~~GrG~~~~e~~~~~~eLA~~lga~vg~SRp~vd~gw~~~~--~qIG~sG~-~v~~P~lYia~GISGa~QH~~Gm-- 83 (123)
T d3clsd2 9 FIMSIGRGIGEETNVEQFRELADEAGATLCCSCPIADAGWLPKS--RQVGQSGK-VVGSCKLYVAMGISGSIQHMAGM-- 83 (123)
T ss_dssp EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSSSSB-CCTTCSEEEEESCCCCHHHHHHH--
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhhcceeeccHHHHcCCCChh--heEecCCc-cccCCcEEEEEcccchHHHHHhc--
Confidence 4555677776667788999999999998876632 13555543 34554333 23378999999977554444443
Q ss_pred cccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 580 RFKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 580 ~~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
.....+|-||.|+.. --+...|..+++|..+++.+|.+++
T Consensus 84 --~~s~~IVAIN~D~~A-pIf~~adygiVgD~~evlp~L~~~l 123 (123)
T d3clsd2 84 --KHVPTIIAVNTDPGA-SIFTIAKYGIVADIFDIEEELKAQL 123 (123)
T ss_dssp --TTCSEEEEECSCTTC-GGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred --cCCCEEEEEcCCCCC-CchhhCCEEEEeeHHHHHHHHHhhC
Confidence 234578999999853 2344579999999999999998764
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=93.72 E-value=0.03 Score=61.76 Aligned_cols=47 Identities=13% Similarity=-0.023 Sum_probs=41.0
Q ss_pred cccCCCCeEEEEeCCCCccc-cHHHHHHhhhcCCCEEEEEEcCCeeeecc
Q psy14416 195 NHYAPGKRVVCVQGDSAFGF-SGMELETLVRYRLPVILVIVNNNGIYGGF 243 (1065)
Q Consensus 195 ~~~~p~rrvV~l~GDGsf~m-~~~eL~t~vr~~lpivivV~NN~gy~~g~ 243 (1065)
....+++.||++.|||.+.- ..+.|..+++.|.++++||+||..| ++
T Consensus 164 ~d~~~k~~V~~~gGDG~~~dIG~~~L~~A~~rg~nit~ivlDNe~Y--~n 211 (447)
T d2c42a2 164 SDLYTKKSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVFVMDTEVY--SN 211 (447)
T ss_dssp GGGTSCCEEEEEEEHHHHHTTTHHHHHHHHHTTCSCEEEEEECSSB--TT
T ss_pred hhcccCCcEEEEecCccHhhcChHHHHHHHHcCCCceEEEEcCccc--cC
Confidence 34568999999999998654 4899999999999999999999988 55
|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: Sirt2 histone deacetylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.058 Score=57.53 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCCCCcccccHHHHhhhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhhcc------------------ccc
Q psy14416 540 VPDAHPNCVSAARTHALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEELH------------------NSV 601 (1065)
Q Consensus 540 v~~~hpl~lg~~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~~~------------------~~~ 601 (1065)
+.|.+|...-....+.+.+||++|++|+++.=.....+....+.....|.|+.++.... ...
T Consensus 202 FGE~lP~~~~~~a~~~~~~aDllIViGTSL~V~Paa~l~~~a~~~~~~v~IN~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (323)
T d1j8fa_ 202 FGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKA 281 (323)
T ss_dssp BTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTC
T ss_pred cCCCCcHHHHHHHHHHHhCCCEEEEECCCCeecCHHHHHHHHHcCCCEEEEECCCCCCCCccchhhccccccccccccCC
Confidence 44444432223345667899999999999753222222222233445566888765321 111
Q ss_pred ccceEEEcCHHHHHHHHHHhhc
Q psy14416 602 QAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 602 ~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..|+.+.+|..++++.|.+.+.
T Consensus 282 ~~D~~~~gdcd~~~~~l~~~lg 303 (323)
T d1j8fa_ 282 YRDVAWLGECDQGCLALAELLG 303 (323)
T ss_dssp CSEEEEESCHHHHHHHHHHHTT
T ss_pred cceEEEccCHHHHHHHHHHHcC
Confidence 3489999999999999999876
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=92.82 E-value=0.12 Score=50.78 Aligned_cols=155 Identities=12% Similarity=-0.046 Sum_probs=97.7
Q ss_pred CccHHHHHHHHHHhcCceEEEeecCCchhhh--------HHHhhcCCc-eEE-EccCCchHHHHHHHHHHHhCCCeEEEE
Q psy14416 266 ELSANQVIAQALKFQGIEYVFGIVGIPVIEL--------AMACQQEGI-HYI-GMRNEQAACYAAQAIGYLTKKPGVCLV 335 (1065)
Q Consensus 266 ~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l--------~~al~~~~i-~~i-~~~~E~~A~~~A~g~ar~tgkpgv~~~ 335 (1065)
.+..+......|.+.--+-+-+......... .+-.++..- |++ .-.-|++.+.+|.|.+...|. ..+..
T Consensus 16 TR~a~g~~L~~l~~~~p~iv~~sADL~~St~t~~~~~~~~~f~~~~~~~r~i~~GIaEqnm~~iAaGla~~~g~-~p~~~ 94 (190)
T d1r9ja1 16 TRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGI-IPFGG 94 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSC-EEEEE
T ss_pred HHHHHHHHHHHHHhhCcceEeeccccCccccccccccccccccccCCCCCeeeeccchhhHHHHHHHHHHcCCc-ceEEe
Confidence 3445555556666655555555444222111 111111112 565 568899988888898876665 55567
Q ss_pred eccccccccccccccccccCcceEeecCCCccC-CCCCCCCCccChhhhhcccccEEeeCC-ChhhHHHHHHHHHHHhhc
Q psy14416 336 VSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD-HEGIGGFQECPQVELARPYCKYSARPP-NIHLIGQHVEKAVRLSTF 413 (1065)
Q Consensus 336 tsGpG~~N~~~av~eA~~~~vPLlvItg~~p~~-~~g~ga~Q~idQ~~l~~~~~k~s~~l~-~~~~i~~~i~~A~~~A~~ 413 (1065)
|..+=+.-....+..+-..+.|++++....... -.+-..+|.+++..++|.+-....-.+ +. ..+..+++.|..
T Consensus 95 t~~~F~~r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~ieDla~~R~iPn~~V~~PaD~----~E~~~al~~a~~ 170 (190)
T d1r9ja1 95 TFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQ----TETSGAWAVALS 170 (190)
T ss_dssp EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSH----HHHHHHHHHHHH
T ss_pred cchhhhccchHHHHHhcccCCceEEEEecCccccCCCCcchhHHHHHHHHHhcCCEEEEecCCH----HHHHHHHHHHHH
Confidence 777777777777777777788888776555543 333456899999999999887655433 33 344556666665
Q ss_pred CCCCEEEEecCh
Q psy14416 414 GKPGVSYLDFPA 425 (1065)
Q Consensus 414 ~~~GPV~L~iP~ 425 (1065)
..+||+||-++.
T Consensus 171 ~~~gP~yiRl~R 182 (190)
T d1r9ja1 171 SIHTPTVLCLSR 182 (190)
T ss_dssp CTTCCEEEECCS
T ss_pred cCCCCEEEEecC
Confidence 667999999884
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=90.72 E-value=0.31 Score=47.82 Aligned_cols=157 Identities=14% Similarity=-0.077 Sum_probs=95.3
Q ss_pred cCccHHHHHHHHHHhcCceEEEeecCCchhhh-----HHHhhc--CCceEEEccCCchHHHHHHHHHHHhCCCeEEEEec
Q psy14416 265 EELSANQVIAQALKFQGIEYVFGIVGIPVIEL-----AMACQQ--EGIHYIGMRNEQAACYAAQAIGYLTKKPGVCLVVS 337 (1065)
Q Consensus 265 ~~~~~~~~l~~~L~~~GV~~vfg~pG~~~~~l-----~~al~~--~~i~~i~~~~E~~A~~~A~g~ar~tgkpgv~~~ts 337 (1065)
..+..+....+.|.+.--+-+-|...-..... ...+++ ++=-+-.-.-|++.+-+|.|++...| ...+..|.
T Consensus 24 ATR~asg~~L~~la~~~p~liggsADL~~St~t~~~~~~~f~~~~p~r~i~~GIaEq~M~~iAaGlA~~g~-~~p~~stf 102 (195)
T d2r8oa1 24 ASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGG-FLPYTSTF 102 (195)
T ss_dssp EHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSS-CEEEEEEE
T ss_pred chHHHHHHHHHHHHhhcccceecccccccccccccccccccccCCCCCeeeeeeehhhHHHHHHHHHhhCC-ceEEeecc
Confidence 34566777777776665555544443221111 011222 23223357889999999999987554 44555666
Q ss_pred cccccccccccccccccCcceEee-cCCCccCCCCCCCCCccChhhhhcccccEEeeCCChhhHHHHHHHHHHHhhcCCC
Q psy14416 338 GPGLLHTFGGMANAQINCWPMLVI-GGSCAQDHEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFGKP 416 (1065)
Q Consensus 338 GpG~~N~~~av~eA~~~~vPLlvI-tg~~p~~~~g~ga~Q~idQ~~l~~~~~k~s~~l~~~~~i~~~i~~A~~~A~~~~~ 416 (1065)
.+-..=....+..+-..+.+++++ +.+.-.--.+-..+|.+++..++|.+-....-.+. + ...+..|++.|.....
T Consensus 103 ~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iEDia~lR~iPn~~v~~P~--D-~~E~~~a~~~a~~~~~ 179 (195)
T d2r8oa1 103 LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPC--D-QVESAVAWKYGVERQD 179 (195)
T ss_dssp GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCS--S-HHHHHHHHHHHHHCSS
T ss_pred eeeeccccchhhccccccccceeeeccccccccccchhhHHHHHHHHHHhhCCcEEEecC--C-HHHHHHHHHHHHHcCC
Confidence 666666667776655555555555 43332222334468999999999999887655332 2 2345566676666667
Q ss_pred CEEEEecCh
Q psy14416 417 GVSYLDFPA 425 (1065)
Q Consensus 417 GPV~L~iP~ 425 (1065)
||+||-++.
T Consensus 180 gP~ylRl~R 188 (195)
T d2r8oa1 180 GPTALILSR 188 (195)
T ss_dssp SCEEEECCS
T ss_pred CCEEEEecC
Confidence 999999884
|
| >d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Transhydrogenase domain III (dIII) domain: Transhydrogenase domain III (dIII) species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.16 E-value=0.29 Score=46.19 Aligned_cols=133 Identities=15% Similarity=0.231 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~~ 551 (1065)
.++++.+|..|++.+|+=|.|..-+++...+++|++.| |.-|- --|.+ |..|.+-.-++. ..
T Consensus 13 a~d~a~~L~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~g~~V~faIHPVA-GRMPGHmNVLLAEa~VpYd~v~emde 91 (180)
T d1pnoa_ 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA-GRMPGHMNVLLAEANVPYDEVFELEE 91 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC-TTSTTHHHHHHHHTTCCGGGEEEHHH
T ss_pred HHHHHHHHHcCCeEEEECCchHHHHHHHHHHHHHHHHHHhcCcceEEEeehhh-hhhhcchhheeeeecCCHHHHcChhh
Confidence 46678899999999999999887666666666666655 55443 22322 333321111111 13
Q ss_pred HHhhhcCCCEEEEeCCccc---------cccccCCCc-cccCCCeEEEecCChh----hcc--ccc-ccceEEEcCHHHH
Q psy14416 552 RTHALQNADLVLLLGARLN---------WILHFGRAP-RFKSNVKIIQVDLNAE----ELH--NSV-QAAVAIQSDVRLT 614 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~---------~~~~~g~~~-~~~~~~~iI~Vd~d~~----~~~--~~~-~~~~~I~~D~~~~ 614 (1065)
.+..+.+.|++|++|+.-. ....+|.+- ...+.+++|.+..+-. -++ -++ .-+.-+.+|++..
T Consensus 92 iN~~f~~~Dv~lViGANDvVNPaA~~dp~spi~GMPvl~v~kak~Viv~KRsm~~GyaGv~NpLF~~~nt~MlfGDAK~~ 171 (180)
T d1pnoa_ 92 INSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKM 171 (180)
T ss_dssp HGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCHHHH
T ss_pred hcchhhhccEEEEecccceeChhhhcCCCCcccCCceeeeecCCEEEEEECCccCCcCCCCCcceEcCCcEEEechHHHH
Confidence 4566889999999996532 112333321 1112345555544321 111 122 3455689999999
Q ss_pred HHHHHHhh
Q psy14416 615 VQQLKQML 622 (1065)
Q Consensus 615 L~~L~~~l 622 (1065)
+++|...+
T Consensus 172 l~~l~~~l 179 (180)
T d1pnoa_ 172 TEQIVQAM 179 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988765
|
| >d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Transhydrogenase domain III (dIII) domain: Transhydrogenase domain III (dIII) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.84 E-value=0.27 Score=46.24 Aligned_cols=134 Identities=18% Similarity=0.240 Sum_probs=77.8
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHhhc---CCCEE--ecCCCCCCCCCCCccccc------------HH
Q psy14416 489 LKQASRLILEAKAPLVIIGKGAAYSQAETELLSFVNSF---NLPFL--PTPMGKGVVPDAHPNCVS------------AA 551 (1065)
Q Consensus 489 v~~~ae~L~~AkrPvIlvG~g~~~~~a~~~L~~LAe~l---g~PV~--tt~~gkg~v~~~hpl~lg------------~~ 551 (1065)
.++++++|..|++.+|+=|.|...+++...+++|++.| |.-|- --|.+ |..|.+-.-++. ..
T Consensus 8 ~~~~a~~l~~A~~ViIVPGYGmAvaqaQ~~v~el~~~L~~~g~~V~faIHPVA-GRMPGHmNVLLAEA~VpYd~v~emde 86 (177)
T d1d4oa_ 8 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVA-GRMPGQLNVLLAEAGVPYDIVLEMDE 86 (177)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTC-SSSTTHHHHHHHHHTCCGGGEEEHHH
T ss_pred HHHHHHHHHhCCeEEEecChHHHHHHHHHHHHHHHHHHHHcCCeEEEEecccc-ccccchhhhhhhhcCCCHHHHhChHh
Confidence 46778899999999999998876666555555555544 55443 22322 333322111111 13
Q ss_pred HHhhhcCCCEEEEeCCccc---------cccccCCCc-cccCCCeEEEecCChh----hcc--ccc-ccceEEEcCHHHH
Q psy14416 552 RTHALQNADLVLLLGARLN---------WILHFGRAP-RFKSNVKIIQVDLNAE----ELH--NSV-QAAVAIQSDVRLT 614 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~---------~~~~~g~~~-~~~~~~~iI~Vd~d~~----~~~--~~~-~~~~~I~~D~~~~ 614 (1065)
.+..+.+.|++|++|+.-. ....+|.+- ...+.+++|.+..+-. -++ -++ .-+.-+.+|++..
T Consensus 87 IN~~f~~~DvalVIGANDvVNPaA~~d~~SpI~GMPvl~v~kak~viv~KRsm~~GyaGv~NpLF~~~nt~MlfGDAk~~ 166 (177)
T d1d4oa_ 87 INHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKT 166 (177)
T ss_dssp HGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHH
T ss_pred hCcchhhccEEEEeccccccCCcccCCCCCccCCCceeEhhhCCEEEEEECCCCCCccCCcCcceecCCcEEEechHHHH
Confidence 4556889999999997632 112344421 1112345555544321 111 122 3455689999999
Q ss_pred HHHHHHhhc
Q psy14416 615 VQQLKQMLS 623 (1065)
Q Consensus 615 L~~L~~~l~ 623 (1065)
+++|...++
T Consensus 167 ~~~l~~~lk 175 (177)
T d1d4oa_ 167 CDALQAKVR 175 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988776
|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase CobB species: Escherichia coli [TaxId: 562]
Probab=89.25 E-value=0.15 Score=51.76 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=49.5
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+++.+||++|++|+++.-.....+.... ..+.++|.||.++...+. ..++.|.+++.++|.+|.+++.
T Consensus 161 ~~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~iiiIN~~~t~~~~--~~~~~i~g~a~e~l~~l~~~l~ 231 (235)
T d1s5pa_ 161 IYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEccCCcccCHHHHHHHHHHcCCeEEEECCCCCCCCC--cccEEEeCCHHHHHHHHHHHHH
Confidence 445678899999999998654333333221 245788999999876654 3588999999999999887764
|
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase sirtuin-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.36 E-value=0.15 Score=52.80 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=46.9
Q ss_pred HHHhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHH
Q psy14416 551 ARTHALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLK 619 (1065)
Q Consensus 551 ~~~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~ 619 (1065)
...+.+++||++|++|+++.-.....+.... ..+.+++.||.++...+. ..++.|.+|+.++|.+|.
T Consensus 199 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vv~IN~~~t~~d~--~~d~~i~g~~~~vL~~l~ 266 (267)
T d2b4ya1 199 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 266 (267)
T ss_dssp HHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHT
T ss_pred HHHHhhhhCCeEEEECCCCeecCHHHHHHHHHHcCCcEEEEeCCCCCCCC--ccCEEEeCCHHHHHHHHh
Confidence 3445678999999999987533322222222 235778889998866553 458999999999998874
|
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase NpdA species: Thermotoga maritima [TaxId: 2336]
Probab=87.71 E-value=0.13 Score=52.58 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=49.7
Q ss_pred HhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhh
Q psy14416 553 THALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQML 622 (1065)
Q Consensus 553 ~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l 622 (1065)
.+.++++|++|++|+++.-....++.... ....++|.||.++...+. ..++.+.+|+.++|+.|.+.+
T Consensus 175 ~~~~~~~DlllviGTSl~V~p~~~l~~~a~~~g~~~i~IN~~~t~~d~--~~d~~i~g~~~e~l~~l~~~l 243 (245)
T d1yc5a1 175 IGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEG 243 (245)
T ss_dssp HHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHH
T ss_pred HHHhhcCCEEEEECCCeEEechhhhhHHHHHcCCeEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHHHHc
Confidence 45667999999999998643322222111 235788889999876654 368999999999999998876
|
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: AF0112, Sir2 homolog (Sir2-AF2) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.70 E-value=0.16 Score=51.83 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=51.0
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCcc-ccCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPR-FKSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~-~~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..++++++|++|.+|+++.-.....+... ...+.++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 177 ~~~~~~~~dl~LviGTSl~V~p~~~~~~~a~~~~~~~i~IN~~~~~~d~--~~d~~i~g~~~evl~~l~~~l~ 247 (252)
T d1ma3a_ 177 AIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEVK 247 (252)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHhhCCCeEEEecCCceeeechHHHHHHHHcCCeEEEECCCCCCCCC--ceeEEEECCHHHHHHHHHHHHH
Confidence 34556899999999999864333333221 1235788999999876653 4588999999999999988775
|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: AF1676, Sir2 homolog (Sir2-AF1?) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.54 E-value=0.21 Score=51.07 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=50.2
Q ss_pred HHhhhcCCCEEEEeCCccccccccCCCccc-cCCCeEEEecCChhhcccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 552 RTHALQNADLVLLLGARLNWILHFGRAPRF-KSNVKIIQVDLNAEELHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 552 ~~~al~~aDlVI~iG~~~~~~~~~g~~~~~-~~~~~iI~Vd~d~~~~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
..+.+.++|++|++|+++.-.....+.... ..+.++|.||.++..++.. .++.|.+++.++|.+|.+.+.
T Consensus 171 a~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~~i~IN~~~t~~d~~--~d~~i~g~a~e~L~~l~~~l~ 241 (249)
T d1m2ka_ 171 AMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPI--ADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGG--CSEEECSCHHHHHHHHHHHHH
T ss_pred HHHhcccCCEEEEECCCCeeeehhhHHHHHHHcCCeEEEECCCCCCCCCc--ccEEEECCHHHHHHHHHHHHH
Confidence 345667999999999987643322222111 2457889999988766643 588999999999999887765
|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: Hst2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.06 E-value=0.35 Score=50.44 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=46.0
Q ss_pred hhcCCCEEEEeCCccccccccCCCccccCCCeEEEecCChhh--cccccccceEEEcCHHHHHHHHHHhhc
Q psy14416 555 ALQNADLVLLLGARLNWILHFGRAPRFKSNVKIIQVDLNAEE--LHNSVQAAVAIQSDVRLTVQQLKQMLS 623 (1065)
Q Consensus 555 al~~aDlVI~iG~~~~~~~~~g~~~~~~~~~~iI~Vd~d~~~--~~~~~~~~~~I~~D~~~~L~~L~~~l~ 623 (1065)
...+||++|.+|+++.-.....+......+.+++.|+.++.. .......|+.|.+|+.++++.|.+.|.
T Consensus 208 ~~~~aDlllviGTSl~V~Pa~~l~~~a~~~~~~viIN~e~~~~~~~~~~~~Dl~I~g~~~~vl~~L~~~LG 278 (289)
T d1q1aa_ 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred hcccCCEEEEECCCceecCHHHHHHHHHcCCCEEEEeCCCCCCcccccCCcCEEEeCCHHHHHHHHHHHcC
Confidence 346899999999987532222222233345667778876532 112345689999999999999998875
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=84.83 E-value=1.3 Score=48.29 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=54.0
Q ss_pred CCCCeEEEEeCCCCccc--cHHHHHHhhhcCCCEEEEEEcCCeeeeccccchhhhhhhhhccCCCcccccCccHHHHHHH
Q psy14416 198 APGKRVVCVQGDSAFGF--SGMELETLVRYRLPVILVIVNNNGIYGGFDEATYAWLDIIKKSNMSEDYDEELSANQVIAQ 275 (1065)
Q Consensus 198 ~p~rrvV~l~GDGsf~m--~~~eL~t~vr~~lpivivV~NN~gy~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~l~~ 275 (1065)
..+++|+|++|||+++= .-+.+..+..+++.-+++|+|+++. .+ ... ........+-+.+
T Consensus 164 ~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~----~~----------~~~----~~~~~~~~~~~~~ 225 (415)
T d2ieaa2 164 TSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQ----RL----------DGP----VTGNGKIINELEG 225 (415)
T ss_dssp CTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSB----CS----------SSB----SCTTSCHHHHHHH
T ss_pred CCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCce----ee----------ccC----hhccccchHHHHH
Confidence 46789999999999874 3666778889999777777776633 11 000 1123456677888
Q ss_pred HHHhcCceEEEeecCCchhhh
Q psy14416 276 ALKFQGIEYVFGIVGIPVIEL 296 (1065)
Q Consensus 276 ~L~~~GV~~vfg~pG~~~~~l 296 (1065)
..+..|-+.+-..-|+....+
T Consensus 226 ~~~~~gw~v~~~~~~~~~~~~ 246 (415)
T d2ieaa2 226 IFEGAGWNVIKVMWGSRWDEL 246 (415)
T ss_dssp HHHHTTCEEEEECBCGGGHHH
T ss_pred HHHhcCceeEEeecchhhhhh
Confidence 888888777665555554443
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.83 E-value=1.1 Score=43.72 Aligned_cols=157 Identities=11% Similarity=-0.095 Sum_probs=89.1
Q ss_pred ccccHHHHHHHHHHhCCCcEEEEeCCCChHHHHHHHHh-------------CCCeEE-EecChhhHHHHHHHHHHhcCCc
Q psy14416 7 EELSANQVIAQALKFQGIEYVFGIVGIPVIELAMACQQ-------------EGIHYI-GMRNEQAACYAAQAIGYLTKKP 72 (1065)
Q Consensus 7 ~~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~~al~~-------------~~i~~v-~~rhE~~A~~mA~gyar~tg~~ 72 (1065)
.++.....+...|.+.. ..+++...+....-...+.+ ..=|++ .-.-|++++.+|.|.|+.-..+
T Consensus 20 aTR~a~g~~L~~la~~~-p~lv~~sADL~~St~t~~~~~~~f~~~~~~~~~~p~R~i~~GIaEq~m~~iaaGlA~~G~~~ 98 (197)
T d1gpua2 20 ATRKLSETVLEDVYNQL-PELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANY 98 (197)
T ss_dssp CHHHHHHHHHHHHTTTC-TTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHhhC-hhhcccccccCCccccccccccccccccccccCCCCceeecccchhhHHHHHHHHHHcCCce
Confidence 34455555566666554 45555555443221111100 011344 3478999999999999763334
Q ss_pred EEEEEeCCcchhhhhHHHhhcccCCCcEEEEecCCCCCc-CccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHH
Q psy14416 73 GVCLVVSGPGLLHTFGGMANAQINCWPMLVIGGSCAQDH-EGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVR 151 (1065)
Q Consensus 73 gv~~~t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~~-~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~ 151 (1065)
-++..+..+=..-.-..+..+...+.|++++........ ..-..||.+++..+++.+-.-. +-.|.+..+ +..+++
T Consensus 99 ~p~~~t~~~f~~~~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn~~--v~~PaD~~e-~~~a~~ 175 (197)
T d1gpua2 99 KPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQ--VWRPADGNE-VSAAYK 175 (197)
T ss_dssp EEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCE--EECCCSHHH-HHHHHH
T ss_pred eEEEEeehhhhhhhHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHHHhcCCCcE--EEecCCHHH-HHHHHH
Confidence 444445444333344444444556778887754333332 2234699999999999886443 223444333 356777
Q ss_pred HhhcCCCcccccccCC
Q psy14416 152 LSTFGKPGRSLLLNNL 167 (1065)
Q Consensus 152 ~A~~~rpGP~~l~~~~ 167 (1065)
.|+....||+++...+
T Consensus 176 ~a~~~~~gP~yiRl~R 191 (197)
T d1gpua2 176 NSLESKHTPSIIALSR 191 (197)
T ss_dssp HHHHCSSCCEEEECCS
T ss_pred HHHHcCCCCEEEEecC
Confidence 7776667998886644
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=81.16 E-value=0.56 Score=51.41 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=28.7
Q ss_pred eCCHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC
Q psy14416 1018 CTTVPQIKQAMKKCLQTTTRPSLINILINPSADRK 1052 (1065)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 1052 (1065)
-.+.+++.++++++.+..++|++|-+.|-......
T Consensus 308 GHd~~~l~~a~~~ak~~~d~P~vI~a~TiKGkGlp 342 (415)
T d2ieaa2 308 GHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMG 342 (415)
T ss_dssp GGCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTCT
T ss_pred cCchhhhHHHHHHHHhcCCCceEEEEecccccCCC
Confidence 35788999999999887788999999997766543
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=80.48 E-value=2 Score=41.63 Aligned_cols=155 Identities=9% Similarity=-0.153 Sum_probs=88.9
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeCCCChHHHH-------HHHHh-CCCeEE-EecChhhHHHHHHHHHHh-cCCcEEEEE
Q psy14416 8 ELSANQVIAQALKFQGIEYVFGIVGIPVIELA-------MACQQ-EGIHYI-GMRNEQAACYAAQAIGYL-TKKPGVCLV 77 (1065)
Q Consensus 8 ~~t~~e~l~~~L~~~GV~~vFgvpG~~~~~l~-------~al~~-~~i~~v-~~rhE~~A~~mA~gyar~-tg~~gv~~~ 77 (1065)
++.........|.+.. ..++++..+....-. +...+ ..=++| .-.-|++++.+|.|.+.. +|...+ ..
T Consensus 21 tR~a~g~~L~~la~~~-~~iv~~sADL~~St~t~~~~~~~~~~~~~p~r~i~~GIaEq~m~~iAaGlA~~~~G~~p~-~~ 98 (192)
T d1itza2 21 TRNLSQQCLNALANVV-PGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPY-CA 98 (192)
T ss_dssp HHHHHHHHHHHHHHHC-TTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEE-EE
T ss_pred HHHHHHHHHHHHHhhC-chhheeccccCCCcCcccccccccccccchhccceeceecchHHHHHHHHHHhcCCCEEE-EE
Confidence 4555555666666665 455555555432211 01111 111333 357899999999999985 465444 44
Q ss_pred eCCcchhhhhHHHhhcccCCCcEEEEecCCCCC-cCccCCCcccchhhhcccccceeccCCCcccHHHHHHHHHHHhhcC
Q psy14416 78 VSGPGLLHTFGGMANAQINCWPMLVIGGSCAQD-HEGIGGFQECPQVELARPYCKYSARPPNIHLIGQHVEKAVRLSTFG 156 (1065)
Q Consensus 78 t~GPG~~N~l~gla~A~~~~~Pll~Isg~~~~~-~~g~~~~Q~~dq~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~~~ 156 (1065)
|..+=..-.-..+..+...+.|++++....... ...-..||.+++..+++.+-....- .|.+.. .+..+++.++..
T Consensus 99 tf~~F~~~~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~~r~iPn~~v~--~P~d~~-e~~~~~~~a~~~ 175 (192)
T d1itza2 99 TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILML--RPADGN-ETAGAYKVAVLN 175 (192)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEE--CCCSHH-HHHHHHHHHHHC
T ss_pred EEhhhhhhccchhhhhccccccceEEEecCCcccccCCcccHHHHHHHHHhCcCCceEE--ecCCHH-HHHHHHHHHHHc
Confidence 555544444555555556677777665333322 2223469999999999988754322 222222 235566666666
Q ss_pred CCcccccccCC
Q psy14416 157 KPGRSLLLNNL 167 (1065)
Q Consensus 157 rpGP~~l~~~~ 167 (1065)
..||+++...+
T Consensus 176 ~~gP~yiRl~R 186 (192)
T d1itza2 176 RKRPSILALSR 186 (192)
T ss_dssp TTSCEEEEECS
T ss_pred CCCCEEEEEcC
Confidence 77998876543
|