Psyllid ID: psy1442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCNGENLIAEAN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEccccccEEEEEHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHcc
Coil and Loop (DISEMBL)
mtymeflgctmtaFGPVIAMFLTTimqdpvkksrgglqyvsdrntmDNTYAMAYVSGLGYGTISAAFSLLNVLdqvsgpgtmglkgesqyfgfTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIggskktmcngenliaean
Flexible Loop (DISEMBL)
MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCNGENLIAEAN
Low Complexity Region (SEG)
MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCNGENLIAEAN
Disordered region (IsUnstruct)
**YMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCN*********
Disordered Region (DISOPRED)
*TYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCNGENLI****
Disordered Region (DISEMBL)
MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCNGENLIAEAN
Disordered Region (DISPRO)
*TYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCNGENLIA***
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTMCNGENLIAEAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9VQG2	238	Gamma-secretase subunit A	yes	N/A	0.930	0.726	0.329	2e-25
Q8JHE9	258	Gamma-secretase subunit A	yes	N/A	0.779	0.562	0.367	2e-19
Q96BI3	265	Gamma-secretase subunit A	yes	N/A	0.865	0.607	0.335	3e-17
Q8BVF7	265	Gamma-secretase subunit A	yes	N/A	0.865	0.607	0.335	3e-17
Q8WW43	257	Gamma-secretase subunit A	no	N/A	0.784	0.568	0.341	7e-15
Q5RDM3	257	Gamma-secretase subunit A	no	N/A	0.494	0.357	0.434	1e-14
Q8C7N7	257	Gamma-secretase subunit A	no	N/A	0.494	0.357	0.419	2e-14
Q9DCZ9	258	Putative gamma-secretase	no	N/A	0.494	0.356	0.404	5e-13
O45876	308	Gamma-secretase subunit a	yes	N/A	0.795	0.480	0.259	8e-07

>sp|Q9VQG2|APH1_DROME Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1 PE=1 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)

Query: 1   MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
           MT  EF GCT  AFGP  A+F+ TI  D                            P+K+
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60

Query: 33  --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
                                     +  GL  V+ D    DN + +AYVSGLG+G IS 
Sbjct: 61  FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120

Query: 66  AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
            F+L+NVL  +SGPGTMGLKG ++ F  T++       LLH FWS++FF   +  N   +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180

Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
             VV SH+F+S  T  +N++ L++   +I  + T+ T + A++V GG+ ++
Sbjct: 181 GYVVFSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch. It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.
Drosophila melanogaster (taxid: 7227)

>sp|Q8JHE9|APH1B_DANRE Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 2/147 (1%)

Query: 30  VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
           +KK+  GL  +S  +TM  +   +AYVSGLG+G +S AFS++N+L    GPGT+G+ GES
Sbjct: 94  LKKANEGLLALSQEDTMPISMRQLAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGES 153

Query: 89  QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
           Q++  +++  T    LLH+FW +VFF   E +    + +VV SH+ +S  T ++N     
Sbjct: 154 QHYFISSAFMTLAIILLHMFWGVVFFEACERQRWWALGAVVASHLVVSCLT-FVNPHYQG 212

Query: 149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
           S++   +     A++AY   GGS + +
Sbjct: 213 SLIPTYIILSVMAVWAYLCAGGSLRNL 239

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors. It may represent a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Danio rerio (taxid: 7955)

>sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A OS=Homo sapiens GN=APH1A PE=1 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)

Query: 14  FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
           FG  +++ L  + +      +KK+  GL  +S D  +  +   MAYVSGL +G IS  FS
Sbjct: 74  FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133

Query: 69  LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
           ++N+L    GPG +G+ G+S Y+  T++  T    LLH FW +VFF   E +    +  V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193

Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
           V SH+  S  T ++N     S+L I   T+   ++A+   GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Homo sapiens (taxid: 9606)

>sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A OS=Mus musculus GN=Aph1a PE=2 SV=2

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)

Query: 14  FGPVIAMFLTTIMQ----DPVKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFS 68
           FG  +++ L  + +      +KK+  GL  +S D  +  +   MAYVSGL +G IS  FS
Sbjct: 74  FGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFS 133

Query: 69  LLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASV 128
           ++N+L    GPG +G+ G+S Y+  T++  T    LLH FW +VFF   E +    +  V
Sbjct: 134 VINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLV 193

Query: 129 VLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
           V SH+  S  T ++N     S+L I   T+   ++A+   GGS +++
Sbjct: 194 VGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 239

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex.

Mus musculus (taxid: 10090)

>sp|Q8WW43|APH1B_HUMAN Gamma-secretase subunit APH-1B OS=Homo sapiens GN=APH1B PE=1 SV=3

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 18/164 (10%)

Query: 30  VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
           +KK+  GL+ ++   T  +   +AYVSGLG+G +S  FS +N L    GPGT+G+ G+S 
Sbjct: 94  LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153

Query: 90  YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVL------SHIFISSYTWYMN 143
            F   ++  T    LLHVFW IVFF G E K   ++  V+L      +  FISSY + +N
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQTFISSY-YGIN 212

Query: 144 SSGLFSVLFIIVFTLFTAMFAYKVIGGSKKT-----MCNGENLI 182
            +  F +L ++        +A+   GGS ++     +C  +N +
Sbjct: 213 LASAFIILVLM------GTWAFLAAGGSCRSLKLCLLCQDKNFL 250

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Homo sapiens (taxid: 9606)

>sp|Q5RDM3|APH1B_PONAB Gamma-secretase subunit APH-1B OS=Pongo abelii GN=APH1B PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 55/92 (59%)

Query: 30  VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
           +KK+  GL+ ++   T  +   +AYVSGLG+G +S  FS +N L    GPGT+G+ G+S 
Sbjct: 94  LKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSP 153

Query: 90  YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 121
            F   ++  T    LLHVFW IVFF G E K 
Sbjct: 154 QFFLYSAFMTLVIILLHVFWGIVFFDGCEKKK 185

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Pongo abelii (taxid: 9601)

>sp|Q8C7N7|APH1B_MOUSE Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 30  VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
           +KK+  GL+ ++   T  +   +AYVSGLG+G +S  FS +N L    GPGT+G+ G+S 
Sbjct: 94  LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 153

Query: 90  YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR 122
            F   ++  T    +LHVFW +VFF G E KN+
Sbjct: 154 QFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNK 185

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A.

Mus musculus (taxid: 10090)

>sp|Q9DCZ9|APH1C_MOUSE Putative gamma-secretase subunit APH-1C OS=Mus musculus GN=Aph1c PE=2 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 30  VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
           +KK+  GL+ ++ + +   +   +AYVSGLG+G +S  FS +N L    GPGT+G+ G+S
Sbjct: 94  LKKASEGLKSINPEEDIAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDS 153

Query: 89  QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR 122
             F   ++  T    +LHVFW +VFF G E KN+
Sbjct: 154 PQFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNK 186

Potential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein).

Mus musculus (taxid: 10090)

>sp|O45876|APH1_CAEEL Gamma-secretase subunit aph-1 OS=Caenorhabditis elegans GN=aph-1 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 29/177 (16%)

Query: 30  VKKSRGGLQYVSDRNTM----------DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGP 79
           +KK++ GL  ++ +  +          +  + +A V GLG G ISA F  +N     SGP
Sbjct: 86  LKKAQRGLNKITRQGQISVAPGVSDLHNARHMLALVCGLGMGVISALFYTMNAFAIFSGP 145

Query: 80  GTMGLK-----GE------SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV--- 125
           GT+GL      GE       +Y     ++     +L HV W+I+ +       R      
Sbjct: 146 GTIGLPNALKTGEIDTNRAGKYLPLCYTLSAILLTLFHVTWTIMVWDSCHKIGRIPSAFV 205

Query: 126 --ASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAY--KVIGGSKKTMCNG 178
             A+ V+SH+ + ++   +NS G   ++F + F +     AY   ++GG+  +  NG
Sbjct: 206 PGAAAVVSHLLV-TFLSSLNSRGFHVLVFAVQFLILLICIAYCNVIMGGTISSFVNG 261

Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors (lin-12 or glp-1). It may represent a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Required for the localization of aph-2.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
20129183	238	anterior pharynx defective 1, isoform A	0.930	0.726	0.329	1e-23
58391850	239	AGAP009816-PA [Anopheles gambiae str. PE	0.913	0.711	0.331	1e-23
195342073	238	GM18364 [Drosophila sechellia] gi|194132	0.930	0.726	0.329	1e-23
91083047	240	PREDICTED: similar to anterior pharynx d	0.854	0.662	0.397	2e-23
195576137	238	GD23180 [Drosophila simulans] gi|1941899	0.930	0.726	0.329	3e-23
195470857	238	GE18179 [Drosophila yakuba] gi|194173824	0.930	0.726	0.329	3e-23
194855000	238	GG24882 [Drosophila erecta] gi|190660327	0.930	0.726	0.324	8e-23
344313184	190	gamma-secretase subunit APH-1A isoform 3	0.908	0.889	0.370	1e-22
321460307	250	hypothetical protein DAPPUDRAFT_308872 [	0.790	0.588	0.331	7e-22
242014226	227	gamma-secretase subunit Aph-1, putative	0.774	0.634	0.380	8e-22

>gi|20129183|ref|NP_608710.1| anterior pharynx defective 1, isoform A [Drosophila melanogaster] gi|442625559|ref|NP_001259963.1| anterior pharynx defective 1, isoform B [Drosophila melanogaster] gi|37077998|sp|Q9VQG2.1|APH1_DROME RecName: Full=Gamma-secretase subunit Aph-1; AltName: Full=Presenilin-stabilization factor gi|7295913|gb|AAF51212.1| anterior pharynx defective 1, isoform A [Drosophila melanogaster] gi|15291627|gb|AAK93082.1| LD12037p [Drosophila melanogaster] gi|24637560|gb|AAN63815.1| presenilin stabilization factor [Drosophila melanogaster] gi|220942752|gb|ACL83919.1| aph-1-PA [synthetic construct] gi|220952974|gb|ACL89030.1| aph-1-PA [synthetic construct] gi|440213230|gb|AGB92500.1| anterior pharynx defective 1, isoform B [Drosophila melanogaster]

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)

Query: 1   MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
           MT  EF GCT  AFGP  A+F+ TI  D                            P+K+
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60

Query: 33  --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
                                     +  GL  V+ D    DN + +AYVSGLG+G IS 
Sbjct: 61  FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120

Query: 66  AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
            F+L+NVL  +SGPGTMGLKG ++ F  T++       LLH FWS++FF   +  N   +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180

Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
             VV SH+F+S  T  +N++ L++   +I  + T+ T + A++V GG+ ++
Sbjct: 181 GYVVFSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58391850|ref|XP_318923.2| AGAP009816-PA [Anopheles gambiae str. PEST] gi|55236032|gb|EAA14158.3| AGAP009816-PA [Anopheles gambiae str. PEST]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 59/229 (25%)

Query: 1   MTYMEFLGCTMTAFGPVIAMFLTTIMQD-----------------------------PV- 30
           MT +EF GC+  AFGP +AMF  TI  D                             PV 
Sbjct: 1   MTVVEFFGCSFLAFGPPVAMFALTIAHDPIRIIILIAASFFWLVSLLLSSTVWLAFHPVT 60

Query: 31  -------------------------KKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTIS 64
                                    +K+  GLQ V+D     D  + ++Y SGLG+G IS
Sbjct: 61  SKVTFGLICSVFIQEGFRYLMYKVLRKTESGLQEVTDIVRIADYRHILSYASGLGFGIIS 120

Query: 65  AAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTL 124
            AFSL+N+L    GP T+GLK  S  F   ++  +    LLH FWS++FF   ++KN   
Sbjct: 121 GAFSLVNILADSVGPATVGLKAASDIFMLISAAQSLAMILLHTFWSVIFFNACDVKNYYH 180

Query: 125 VASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTL--FTAMFAYKVIGGS 171
           +  VV SH+F+S  T  +N+SGL++V  +I +T+   T   A++V GG+
Sbjct: 181 IGYVVASHLFVSCMT-LLNASGLYAVTLLISYTMVCITGAIAFQVAGGT 228

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195342073|ref|XP_002037626.1| GM18364 [Drosophila sechellia] gi|194132476|gb|EDW54044.1| GM18364 [Drosophila sechellia]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 58/231 (25%)

Query: 1   MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
           MT  EF GCT  AFGP  A+F+ TI  D                            P+K+
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60

Query: 33  --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
                                     +  GL  V+ D    DN + +AYVSGLG+G IS 
Sbjct: 61  FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120

Query: 66  AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
            F+L+NVL  +SGPGTMGLKG ++ F  T++       LLH FWS++FF  ++  N   +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNALDTNNYIHI 180

Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
             VV SH+F+S  T  +N++ L++   +I  + T+ T + A++V GG+ ++
Sbjct: 181 GYVVGSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083047|ref|XP_966461.1| PREDICTED: similar to anterior pharynx defective 1 CG2855-PA [Tribolium castaneum] gi|270007655|gb|EFA04103.1| hypothetical protein TcasGA2_TC014338 [Tribolium castaneum]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 98/166 (59%), Gaps = 7/166 (4%)

Query: 13  AFGPVIAMFLTT----IMQDPVKKSRGGLQYVSDRNT--MDNTYAMAYVSGLGYGTISAA 66
           AFG V ++F       I+   ++K+  GL+ ++D +T  ++N + +AYVSGLG+G IS A
Sbjct: 64  AFGVVFSVFFQETFRYIIYKILRKAENGLKKITDDSTQLIENKHILAYVSGLGFGIISGA 123

Query: 67  FSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVA 126
           FSL+N+L    GPGTMGLKG ++ F  T++    CF+LLH FW ++FF  ++  N+  V 
Sbjct: 124 FSLVNILADAVGPGTMGLKGGNEMFFLTSAATGLCFTLLHTFWGVIFFNALDNSNKCYVG 183

Query: 127 SVVLSHIFISSYTWYMNSSGLFSVLFIIVFTL-FTAMFAYKVIGGS 171
            VV+SH+  S  T      G    L  + F L    + AY+V GGS
Sbjct: 184 VVVVSHLLSSCITLLNFKVGPAGTLIPLYFNLVLMGLMAYRVAGGS 229

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195576137|ref|XP_002077933.1| GD23180 [Drosophila simulans] gi|194189942|gb|EDX03518.1| GD23180 [Drosophila simulans]

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)

Query: 1   MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
           MT  EF GCT  AFGP  A+F+ TI  D                            P+K+
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60

Query: 33  --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
                                     +  GL  V+ D    DN + +AYVSGLG+G IS 
Sbjct: 61  FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120

Query: 66  AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
            F+L+NVL  +SGPGTMGLKG ++ F  T++       LLH FWS++FF   +  N   +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180

Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
             VV SH+F+S  T  +N++ L++   +I  + T+ T + A++V GG+ ++
Sbjct: 181 GYVVGSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470857|ref|XP_002087723.1| GE18179 [Drosophila yakuba] gi|194173824|gb|EDW87435.1| GE18179 [Drosophila yakuba]

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)

Query: 1   MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
           MT  EF GCT  AFGP  A+F+ TI  D                            P+K+
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60

Query: 33  --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
                                     +  GL  V+ D    DN + +AYVSGLG+G IS 
Sbjct: 61  FLAFGVVFSVCFQEGFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120

Query: 66  AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
            F+L+NVL  +SGPGTMGLKG ++ F  T++       LLH FWS++FF   +  N   +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180

Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
             VV SH+F+S  T  +N++ L++   +I  + T+ T + A++V GG+ ++
Sbjct: 181 GYVVGSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRVAGGTSRS 230

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194855000|ref|XP_001968460.1| GG24882 [Drosophila erecta] gi|190660327|gb|EDV57519.1| GG24882 [Drosophila erecta]

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 58/231 (25%)

Query: 1   MTYMEFLGCTMTAFGPVIAMFLTTIMQD----------------------------PVKK 32
           MT  EF GCT  AFGP  A+F+ TI  D                            P+K+
Sbjct: 1   MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60

Query: 33  --------------------------SRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 65
                                     +  GL  V+ D    DN + +AYVSGLG+G IS 
Sbjct: 61  FLAFGVVFSVCFQEGFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120

Query: 66  AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLV 125
            F+L+NVL  +SGPGTMGLKG ++ F  T++       LLH FWS++FF   +  N   +
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHI 180

Query: 126 ASVVLSHIFISSYTWYMNSSGLFSVLFII--VFTLFTAMFAYKVIGGSKKT 174
             VV SH+F+S  T  +N++ L++   +I  + T+ T + A+++ GG+ ++
Sbjct: 181 GYVVGSHLFVSLIT-LLNANELYTTTLLINYLVTILTGVLAFRLAGGTSRS 230

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344313184|ref|NP_001230700.1| gamma-secretase subunit APH-1A isoform 3 [Homo sapiens] gi|194374033|dbj|BAG62329.1| unnamed protein product [Homo sapiens]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 9/178 (5%)

Query: 6   FLGCTMTAFGPVIAMFLTTIMQDPVK-------KSRGGLQYVS-DRNTMDNTYAMAYVSG 57
           F GCT  AFGP  A+FL T+  DP++       K+  GL  +S D  +  +   MAYVSG
Sbjct: 6   FFGCTFVAFGPAFALFLITVAGDPLRVIILVAGKADEGLASLSEDGRSPISIRQMAYVSG 65

Query: 58  LGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGV 117
           L +G IS  FS++N+L    GPG +G+ G+S Y+  T++  T    LLH FW +VFF   
Sbjct: 66  LSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDAC 125

Query: 118 EIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
           E +    +  VV SH+  S  T ++N     S+L I   T+   ++A+   GGS +++
Sbjct: 126 ERRRYWALGLVVGSHLLTSGLT-FLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSI 182

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321460307|gb|EFX71350.1| hypothetical protein DAPPUDRAFT_308872 [Daphnia pulex]

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 98/205 (47%), Gaps = 58/205 (28%)

Query: 1   MTYMEFLGCTMTAFGPVIAMFLTTI---------------------------------MQ 27
           M  +EF GC   AFGP +AMFL TI                                 + 
Sbjct: 1   MALLEFFGCAFLAFGPPLAMFLLTIAKDPIRIIILIASAFFWLLSLLTSSLLWLVAVTLH 60

Query: 28  DPV----------------------KKSRGGLQYVSDRNT--MDNTYAMAYVSGLGYGTI 63
            P+                      +K+  GL+ +++ +T  + N   +AYVSGLG+G I
Sbjct: 61  SPIVVGVIFSVLFQELFRYLIYLLLRKAEVGLKKLTESDTAIITNKNILAYVSGLGFGII 120

Query: 64  SAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRT 123
           S  FSL+NVL   +GPGT+GL G+S  F  T+++ T CF LLH  W ++FF  ++ K   
Sbjct: 121 SGTFSLVNVLADATGPGTVGLHGDSNLFFLTSALLTLCFILLHTAWGVLFFHALDKKKYL 180

Query: 124 LVASVVLSHIFISSYTWYMNSSGLF 148
            +  VV+SH+ +S  T  MNSS L+
Sbjct: 181 ALVWVVMSHLLVSLLT-LMNSSQLY 204

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014226|ref|XP_002427792.1| gamma-secretase subunit Aph-1, putative [Pediculus humanus corporis] gi|212512261|gb|EEB15054.1| gamma-secretase subunit Aph-1, putative [Pediculus humanus corporis]

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 91/147 (61%), Gaps = 3/147 (2%)

Query: 30  VKKSRGGLQYVSDRNT--MDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGE 87
           ++ + GGL+ ++D  T  ++N + +AYV+GLG+G +S  F+L+NVL    GP TMGL   
Sbjct: 76  IRSAEGGLKKITDNETQIIENKHILAYVAGLGFGIMSGLFALINVLADSLGPATMGLHQG 135

Query: 88  SQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSG- 146
           S+ F  T++  T CF LLH FW ++FF   + KN   +  V+L+H+ +S+ T++      
Sbjct: 136 SEKFFMTSAATTLCFILLHTFWGVIFFSAADSKNYINITWVLLTHLIVSALTFFNQKEWY 195

Query: 147 LFSVLFIIVFTLFTAMFAYKVIGGSKK 173
           L S+L   +  +FT + A+KV GGS +
Sbjct: 196 LASLLPAYIIMIFTGLLAFKVAGGSLR 222

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
FB|FBgn0031458	238	aph-1 "anterior pharynx defect	0.774	0.605	0.391	7.1e-34
ZFIN|ZDB-GENE-031118-31	258	aph1b "anterior pharynx defect	0.779	0.562	0.367	3.3e-30
UNIPROTKB|Q0PY50	257	Aph1b "APH-1B'" [Rattus norveg	0.774	0.560	0.360	2.5e-28
RGD|1562468	256	Aph1b "anterior pharynx defect	0.774	0.562	0.360	6.6e-28
ZFIN|ZDB-GENE-050913-96	253	zgc:114200 "zgc:114200" [Danio	0.838	0.616	0.329	6.6e-28
UNIPROTKB|Q8WW43	257	APH1B "Gamma-secretase subunit	0.860	0.622	0.335	8.4e-28
MGI|MGI:3522097	257	Aph1b "anterior pharynx defect	0.758	0.548	0.36	2.2e-27
MGI|MGI:1915568	258	Aph1c "anterior pharynx defect	0.758	0.546	0.350	2.5e-26
UNIPROTKB|E1C2N9	211	APH1A "Uncharacterized protein	0.596	0.526	0.366	9.1e-25
UNIPROTKB|Q5TB21	150	APH1A "Anterior pharynx defect	0.736	0.913	0.397	3.8e-23

FB|FBgn0031458 aph-1 "anterior pharynx defective 1" [Drosophila melanogaster (taxid:7227)]

 Score = 288 (106.4 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 58/148 (39%), Positives = 92/148 (62%)

Query:    30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
             ++ +  GL  V+ D    DN + +AYVSGLG+G IS  F+L+NVL  +SGPGTMGLKG +
Sbjct:    84 LRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISGMFALVNVLADMSGPGTMGLKGGT 143

Query:    89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
             + F  T++       LLH FWS++FF   +  N   +  VV SH+F+S  T  +N++ L+
Sbjct:   144 ELFFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSLIT-LLNANELY 202

Query:   149 SVLFIIVF--TLFTAMFAYKVIGGSKKT 174
             +   +I +  T+ T + A++V GG+ ++
Sbjct:   203 TTTLLINYLVTILTGVLAFRVAGGTSRS 230

GO:0005886 "plasma membrane" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0004175 "endopeptidase activity" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-031118-31 aph1b "anterior pharynx defective 1B" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 54/147 (36%), Positives = 88/147 (59%)

Query:    30 VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
             +KK+  GL  +S  +TM  +   +AYVSGLG+G +S AFS++N+L    GPGT+G+ GES
Sbjct:    94 LKKANEGLLALSQEDTMPISMRQLAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGES 153

Query:    89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
             Q++  +++  T    LLH+FW +VFF   E +    + +VV SH+ +S  T ++N     
Sbjct:   154 QHYFISSAFMTLAIILLHMFWGVVFFEACERQRWWALGAVVASHLVVSCLT-FVNPHYQG 212

Query:   149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
             S++   +     A++AY   GGS + +
Sbjct:   213 SLIPTYIILSVMAVWAYLCAGGSLRNL 239

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

UNIPROTKB|Q0PY50 Aph1b "APH-1B'" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 53/147 (36%), Positives = 87/147 (59%)

Query:    30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
             +KK+  GL+ ++   T  +   +AYVSGLG+G +S  FS +N L    GPGT+G+ G+S 
Sbjct:    94 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSP 153

Query:    90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRT-LVASVVLSHIFISSYTWYMNSSGLF 148
              F   ++  T    +LHVFW IVFF G E KN+  ++ +V+L+H+ +S+ T       + 
Sbjct:   154 QFFLNSAFMTLVIIMLHVFWGIVFFDGCE-KNKWYILLTVLLTHLLVSTQTLLSPHYEVN 212

Query:   149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
              V   I+  L   ++A+ V GGS++++
Sbjct:   213 LVTAYIIMVLM-GIWAFCVAGGSRRSL 238

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

RGD|1562468 Aph1b "anterior pharynx defective 1 homolog B (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 53/147 (36%), Positives = 87/147 (59%)

Query:    30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
             +KK+  GL+ ++   T  +   +AYVSGLG+G +S  FS +N L    GPGT+G+ G+S 
Sbjct:    93 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSP 152

Query:    90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRT-LVASVVLSHIFISSYTWYMNSSGLF 148
              F   ++  T    +LHVFW IVFF G E KN+  ++ +V+L+H+ +S+ T       + 
Sbjct:   153 QFFLNSAFMTLVIIMLHVFWGIVFFDGCE-KNKWYILLTVLLTHLLVSTQTLLSPHYEVN 211

Query:   149 SVLFIIVFTLFTAMFAYKVIGGSKKTM 175
              V   I+  L   ++A+ V GGS++++
Sbjct:   212 LVTAYIIMVLM-GIWAFCVAGGSRRSL 237

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0008233 "peptidase activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=ISO

GO:0016485 "protein processing" evidence=ISO

GO:0030133 "transport vesicle" evidence=ISO

ZFIN|ZDB-GENE-050913-96 zgc:114200 "zgc:114200" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 53/161 (32%), Positives = 93/161 (57%)

Query:    30 VKKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
             ++K+  GL  +SD  ++  +   MAYV+GLG+G +  AFS++N+L    GPGT+G+ G+S
Sbjct:    94 LRKATEGLAAISDDASSAISVRQMAYVAGLGFGVMRGAFSMINILSDSLGPGTVGIFGDS 153

Query:    89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLF 148
             QY+  T ++ T   +LLH FW ++FF G E  +  ++A VV  H+ ++  +  +N     
Sbjct:   154 QYYFITAALMTLALTLLHTFWGVLFFEGCEKSSWWVIAVVVSLHLLVAGLS-LLNPLYEG 212

Query:   149 SVLFIIVFTLFTAMFAYKVIGGSKKTM---CNGENLIAEAN 186
             S+  +   TL   ++A+   GGS + +   C    + AE++
Sbjct:   213 SLPPVYCITLLMGIWAFFSSGGSLQNLSALCTRRKVEAESS 253

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

UNIPROTKB|Q8WW43 APH1B "Gamma-secretase subunit APH-1B" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 56/167 (33%), Positives = 96/167 (57%)

Query:    14 FGPVIAMFLTTIMQDP----VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSL 69
             FG  +++++  + +      +KK+  GL+ ++   T  +   +AYVSGLG+G +S  FS 
Sbjct:    74 FGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYVSGLGFGIMSGVFSF 133

Query:    70 LNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVV 129
             +N L    GPGT+G+ G+S  F   ++  T    LLHVFW IVFF G E K   ++  V+
Sbjct:   134 VNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVL 193

Query:   130 LSHIFISSYTWYMNSSGL-FSVLFIIVFTLFTAMFAYKVIGGSKKTM 175
             L+H+ +S+ T+  +  G+  +  FII+  + T  +A+   GGS +++
Sbjct:   194 LTHLLVSAQTFISSYYGINLASAFIILVLMGT--WAFLAAGGSCRSL 238

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008233 "peptidase activity" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0016485 "protein processing" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0007220 "Notch receptor processing" evidence=TAS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0030133 "transport vesicle" evidence=IDA

MGI|MGI:3522097 Aph1b "anterior pharynx defective 1b homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 241 (89.9 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 54/150 (36%), Positives = 89/150 (59%)

Query:    30 VKKSRGGLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
             +KK+  GL+ ++   T  +   +AYVSGLG+G +S  FS +N L    GPGT+G+ G+S 
Sbjct:    94 LKKASEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSP 153

Query:    90 YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR--TLVASVVLSHIFISSYTWYMNSSGL 147
              F   ++  T    +LHVFW +VFF G E KN+  TL+ +V+L+H+ +S+ T+    S  
Sbjct:   154 QFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNKWYTLL-TVLLTHLVVSTQTFL---SPY 208

Query:   148 FSVLFIIVFTLFTAM--FAYKVIGGSKKTM 175
             + V  +  + +   M  +A+ V GGS +++
Sbjct:   209 YEVNLVTAYIIMVLMGIWAFYVAGGSCRSL 238

GO:0004175 "endopeptidase activity" evidence=IGI

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0008152 "metabolic process" evidence=IGI

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

MGI|MGI:1915568 Aph1c "anterior pharynx defective 1c homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 230 (86.0 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
 Identities = 53/151 (35%), Positives = 90/151 (59%)

Query:    30 VKKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
             +KK+  GL+ ++ + +   +   +AYVSGLG+G +S  FS +N L    GPGT+G+ G+S
Sbjct:    94 LKKASEGLKSINPEEDIAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDS 153

Query:    89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNR--TLVASVVLSHIFISSYTWYMNSSG 146
               F   ++  T    +LHVFW +VFF G E KN+  TL+ +V+L+H+ +S+ T+    S 
Sbjct:   154 PQFFLNSAFMTLVVIMLHVFWGVVFFDGCE-KNKWYTLL-TVLLTHLVVSTQTFL---SP 208

Query:   147 LFSVLFIIVFTLFTAM--FAYKVIGGSKKTM 175
              + V  +  + +   M  +A+ V GGS +++
Sbjct:   209 YYEVNLVTAYIIMVLMGIWAFYVAGGSCRSL 239

GO:0001656 "metanephros development" evidence=IMP

GO:0004175 "endopeptidase activity" evidence=IGI

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISA

GO:0016485 "protein processing" evidence=IGI;ISA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

UNIPROTKB|E1C2N9 APH1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 207 (77.9 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
 Identities = 41/112 (36%), Positives = 68/112 (60%)

Query:    30 VKKSRGGLQYVSDRNTMD-NTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGES 88
             ++K+  GL  +S+      +   MAYV+G+G+G +S AFS++N+L    GPGT+G+ G+S
Sbjct:    94 LRKAIEGLVALSEDGCSPISIQQMAYVAGVGFGLMSGAFSMINLLADALGPGTVGIHGDS 153

Query:    89 QYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTW 140
             Q +  T++  T     LH FW I+FF G E +    + +VV+ H+ +S  T+
Sbjct:   154 QLYFLTSAFMTMVLIFLHTFWGILFFHGCENRRWWEIVAVVVMHLAVSGSTF 205

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

UNIPROTKB|Q5TB21 APH1A "Anterior pharynx defective 1 homolog A (C. elegans)" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 58/146 (39%), Positives = 82/146 (56%)

Query:     6 FLGCTMTAFGPVIAMFLTTIMQDPVK-------KSRGGLQYVS-DRNTMDNTYAMAYVSG 57
             F GCT  AFGP  A+FL T+  DP++       K+  GL  +S D  +  +   MAYVSG
Sbjct:     6 FFGCTFVAFGPAFALFLITVAGDPLRVIILVAGKADEGLASLSEDGRSPISIRQMAYVSG 65

Query:    58 LGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGV 117
             L +G IS  FS++N+L    GPG +G+ G+S Y+  T++  T    LLH FW +VFF   
Sbjct:    66 LSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDAC 125

Query:   118 EIKNRTLVASVVLSHIFISSYTWYMN 143
             E +    +  VV SH+  S  T ++N
Sbjct:   126 ERRRYWALGLVVGSHLLTSGLT-FLN 150

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VQG2	APH1_DROME	No assigned EC number	0.3290	0.9301	0.7268	yes	N/A
Q96BI3	APH1A_HUMAN	No assigned EC number	0.3353	0.8655	0.6075	yes	N/A
Q8BVF7	APH1A_MOUSE	No assigned EC number	0.3353	0.8655	0.6075	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	186
pfam06105	237	pfam06105, Aph-1, Aph-1 protein	1e-29
pfam06105	237	pfam06105, Aph-1, Aph-1 protein	1e-04

>gnl|CDD|218900 pfam06105, Aph-1, Aph-1 protein

 Score =  108 bits (273), Expect = 1e-29
 Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 5/144 (3%)

Query: 31  KKSRGGLQYVSDRNTM-DNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQ 89
           KK+  GL  ++D+  +  + + +AYVSGLG+G IS  FSL+N+L   SGPGT+GL G+SQ
Sbjct: 85  KKAEEGLDSIADQGQIPIDKHQLAYVSGLGFGVISGVFSLVNILADSSGPGTVGLHGDSQ 144

Query: 90  YFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFS 149
           YF  T++  T    LLH FW ++FF G E +  + +A VV+SH+ +S  T  + +  L+ 
Sbjct: 145 YFFLTSAFITLAIILLHTFWGVIFFDGCEKRKYSHIAFVVVSHLVVSGLT--LLNRPLYE 202

Query: 150 VLFIIVF--TLFTAMFAYKVIGGS 171
              +I +   L    +A+ V GGS
Sbjct: 203 ASLVISYIILLLMGAWAFVVAGGS 226

This family consists of several eukaryotic Aph-1 proteins.Gamma-secretase catalyzes the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signaling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity. Length = 237

>gnl|CDD|218900 pfam06105, Aph-1, Aph-1 protein

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 2  TYMEFLGCTMTAFGPVIAMFLTTIMQDPVK 31
          T   F GCT  AFGP +A+FL TI +DP++
Sbjct: 1  TVAVFFGCTFIAFGPALALFLLTIARDPLR 30

This family consists of several eukaryotic Aph-1 proteins.Gamma-secretase catalyzes the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signaling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity. Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG3972|consensus	252		100.0
PF06105	238	Aph-1: Aph-1 protein; InterPro: IPR009294 This fam	100.0
PF10086	223	DUF2324: Putative membrane peptidase family (DUF23	93.51

>KOG3972|consensus

Probab=100.00  E-value=4e-69  Score=455.54  Aligned_cols=178  Identities=40%  Similarity=0.756  Sum_probs=176.2

Q ss_pred             CcchhhhhHHHHhhhhhhhhhhHhhcCChh--------------------------------------------------
Q psy1442           1 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPV--------------------------------------------------   30 (186)
Q Consensus         1 MT~~~ffGc~fiAfGP~lalF~~tIa~~P~--------------------------------------------------   30 (186)
                      ||+++||||+|+||||++|+|++|||+||+                                                  
T Consensus         1 M~~~~ffgC~fiaFgPa~ALf~~tIA~dPvRIIiliagaFFWLvSLLisSl~W~~l~i~l~~~lifg~~vsV~~qE~fR~   80 (252)
T KOG3972|consen    1 MGAAVFFGCTFIAFGPAFALFVFTIAHDPVRIIILIAGAFFWLVSLLISSLVWFGLSIVLPDDLIFGATVSVIAQELFRF   80 (252)
T ss_pred             CCcceeeeeEEeeeCcchhhheeeecCCCeeehhhHHHHHHHHHHHHHHHHHHHheEccchhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997                                                  


Q ss_pred             ------hhhhhhcccccC-cccccchhHHHHhhhhhhHHHHHHHHHHhhhhhcccCccccCCCCCcchhhHhhHHHHHHH
Q psy1442          31 ------KKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFS  103 (186)
Q Consensus        31 ------rka~~gL~~is~-~~~~~~~~~lAyvsGlGfGimsg~f~~~nvLads~GPGT~g~~~~s~~ffl~SA~~tl~~i  103 (186)
                            |||||||++++| +|.+++||++|||||||||+|||+|+.+|+|+|++||||+|+|||+|+||++||++++.++
T Consensus        81 ayyklLkka~~GL~si~~d~~~~~s~h~lAyVsGLgfGIiSgvFs~vN~lad~sGPGtvGl~g~s~~~fl~sa~~al~ii  160 (252)
T KOG3972|consen   81 AYYKLLKKAQEGLNSITEDGRLHNSRHMLAYVSGLGFGIISGVFSTVNALADFSGPGTVGLHGDSPYFFLTSAFSALLII  160 (252)
T ss_pred             HHHHHHHHHHHHHHhcCccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHhccCCCeeccCCCcchhhHHHHHHHHHHH
Confidence                  999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCceeeeehHhHHHHHHHHhhhhhcCCCCeeehhHHHH--HHHHHHHHHHHhCCCcccccccc
Q psy1442         104 LLHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVF--TLFTAMFAYKVIGGSKKTMCNGE  179 (186)
Q Consensus       104 LLH~fW~VIfFdg~~kk~~~~i~~V~~sHl~vS~lTll~N~~~~~~~sl~~~y--l~~~~~~Af~~aGgs~~~~~~~~  179 (186)
                      |+||||+|+|||+||||+|+....|+.|||+||.+|++ |+++.|+.++.+.|  +++||.|||.+|||++||++|+-
T Consensus       161 LlHvfW~ivffdac~k~~~~~l~~vv~SHLlvs~lt~l-ns~~~y~~~la~~flilvl~g~~af~~aGGt~rSf~~~i  237 (252)
T KOG3972|consen  161 LLHVFWGIVFFDACEKIAYVPLGAVVVSHLLVSFLTFL-NSRGFYVLVLAVQFLILVLMGAWAFVIAGGTIRSFVNGI  237 (252)
T ss_pred             HHHHHHHheeehhhhhhchhhhHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHhhh
Confidence            99999999999999999999999999999999999999 99999999999999  99999999999999999999985

>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins

Probab=100.00  E-value=6.6e-66  Score=442.61  Aligned_cols=174  Identities=41%  Similarity=0.725  Sum_probs=168.9

Q ss_pred             cchhhhhHHHHhhhhhhhhhhHhhcCChh---------------------------------------------------
Q psy1442           2 TYMEFLGCTMTAFGPVIAMFLTTIMQDPV---------------------------------------------------   30 (186)
Q Consensus         2 T~~~ffGc~fiAfGP~lalF~~tIa~~P~---------------------------------------------------   30 (186)
                      |+++||||+||||||++++|++||||||+                                                   
T Consensus         1 T~~~f~Gc~liafgP~lalf~~tIa~~p~liIi~i~~aFfWLvSLLlss~iW~i~~pl~~~l~f~v~~sV~~QE~fR~~~   80 (238)
T PF06105_consen    1 TLAVFFGCALIAFGPALALFVFTIARDPQLIIILIAGAFFWLVSLLLSSLIWFIVVPLRDNLAFGVLFSVLIQEAFRYLY   80 (238)
T ss_pred             ChHHHHHHHHHHHCHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999998                                                   


Q ss_pred             ----hhhhhhcccccC-cccccchhHHHHhhhhhhHHHHHHHHHHhhhhhcccCccccCCCC-CcchhhHhhHHHHHHHH
Q psy1442          31 ----KKSRGGLQYVSD-RNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGE-SQYFGFTTSIFTCCFSL  104 (186)
Q Consensus        31 ----rka~~gL~~is~-~~~~~~~~~lAyvsGlGfGimsg~f~~~nvLads~GPGT~g~~~~-s~~ffl~SA~~tl~~iL  104 (186)
                          ||||+||++++| ++.|+|||++|||+|+|||+|||+|+++|+|+|++||||+|+|+| +++||++||++|+|+++
T Consensus        81 ~~ll~kae~gL~~i~~~~~~~~~~~~lA~v~GlGfGimsg~f~~~n~Lads~GPGt~g~~~c~~~~ffl~SA~~tl~~~l  160 (238)
T PF06105_consen   81 YKLLKKAEEGLQSIAEDGTSPISRHQLAYVSGLGFGIMSGVFSFVNILADSLGPGTVGIHGCPSMPFFLTSAFMTLAFIL  160 (238)
T ss_pred             HHHHHHHHHHHHHhccccCCCCccceeeehhccchHHHHHHHHHHhhhhhccCCceeccCCCCCccchHHHHHHHHHHHH
Confidence                999999999999 899999999999999999999999999999999999999999995 55699999999999999


Q ss_pred             HHHHHHHHHhhccccCceeeeehHhHHHHHHHHhhhhhcCCCCeeehhHHHH--HHHHHHHHHHHhCCCcccccc
Q psy1442         105 LHVFWSIVFFRGVEIKNRTLVASVVLSHIFISSYTWYMNSSGLFSVLFIIVF--TLFTAMFAYKVIGGSKKTMCN  177 (186)
Q Consensus       105 LH~fW~VIfFdg~~kk~~~~i~~V~~sHl~vS~lTll~N~~~~~~~sl~~~y--l~~~~~~Af~~aGgs~~~~~~  177 (186)
                      ||||||||+|||||||||+++++|+++|+++|++|++ | ++.|..++++.|  ++++++|||+++|||+||+.+
T Consensus       161 LH~fW~VI~F~g~~~~~~~~i~~V~~~Hl~vs~lTll-N-~~~~~~~~v~~~~il~~~~~~a~~~~gg~~~s~~~  233 (238)
T PF06105_consen  161 LHTFWMVIFFDGCEKKNWWLIAFVVISHLLVSCLTLL-N-SPLYSGGCVPSYPILVLTGAWAFFVAGGSVRSLKR  233 (238)
T ss_pred             HHHHHHHhhhhhhccCCceEEEehHHHHHHHHHHHHc-C-ccccccchHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            9999999999999999999999999999999999999 9 779999999999  999999999999999999864

Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane

>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.51  E-value=0.11  Score=44.64  Aligned_cols=89  Identities=24%  Similarity=0.269  Sum_probs=63.3

Q ss_pred             HHhhhhhhHHHHHHH----HHHhhhhhc--ccCcccc----------------CCCCCcchhhHhhHHHHHHHHHHHHHH
Q psy1442          53 AYVSGLGYGTISAAF----SLLNVLDQV--SGPGTMG----------------LKGESQYFGFTTSIFTCCFSLLHVFWS  110 (186)
Q Consensus        53 AyvsGlGfGimsg~f----~~~nvLads--~GPGT~g----------------~~~~s~~ffl~SA~~tl~~iLLH~fW~  110 (186)
                      |+.-|+|||.+=+++    +.+|.+.-+  .=.|+.-                +..-|+..++.+.+-..+-+++|+..+
T Consensus        97 al~~GlGhGg~Eailvg~~~~l~~~v~~~~in~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ERi~Al~~hi~lS  176 (223)
T PF10086_consen   97 ALAYGLGHGGIEAILVGGLSLLNNLVLAMMINSGSLDQLLEQPAELLEQIQSALASLPPWSFLLGGVERIFALLFHIGLS  176 (223)
T ss_pred             HHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            777899999875544    444644322  1112211                012234468899999999999999999


Q ss_pred             HHHhhccccCceeeeehHhHHHHHHHHhhhh
Q psy1442         111 IVFFRGVEIKNRTLVASVVLSHIFISSYTWY  141 (186)
Q Consensus       111 VIfFdg~~kk~~~~i~~V~~sHl~vS~lTll  141 (186)
                      ++.+.+.++||++.....++.|.++=...-+
T Consensus       177 vlV~~av~~~k~~~l~~AIllHaliD~~aal  207 (223)
T PF10086_consen  177 VLVWYAVRQRKKWYLVLAILLHALIDFPAAL  207 (223)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888888999988764433

However, they are predicted to be integral membrane proteins (with several transmembrane segments).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00