Psyllid ID: psy14433


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
MDYFRDLGNSFSPKSPPNSPNTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHPKSKSYSMRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNVAKSKRMWLSRRVFQ
cccccccccccccccccccccccccccccccccEEEEEccHHHHHHccccccccccccccccccccccccEEcccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHEEEEEEccccccccEEcccccccEEccccc
cccHHHcccccccccccccccccccccccccccccHHHccccHHHHHHHcccccEEcccccccccccccEEEccccccccEEEHHHHcccccccHHHHHHHHHHHHHHHHHHHcccEEEcccccEEEHHHHHccHHHHcHHHcc
mdyfrdlgnsfspksppnspntelsteddhlkgVYINFANKDELvanfdkstdwiwdwssrpdqappkdwkfrhpksksysmRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNVAKSKRMWLSRRVFQ
mdyfrdlgnsfspksppnspntELSTEDDHLKGVYINFANKDELVANFDKSTDWIWdwssrpdqappkdwkfrhpksksysmryAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLiasnvakskrmwlsrrvfq
MDYFRDLGnsfspksppnspnTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHPKSKSYSMRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNVAKSKRMWLSRRVFQ
******************************LKGVYINFANKDELVANFDKSTDWIWDWS**********************MRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNVAKSKRMWL******
***************************************************TDWIWDWSSRPDQAPPK*W********************SLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGML***********WLSRRVFQ
MDYFRDLGN****************TEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHPKSKSYSMRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNVAKSKRMWLSRRVFQ
******L***************************YINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHPKSKSYSMRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNVAKSKRMWLSR****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
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MDYFRDLGNSFSPKSPPNSPNTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHPKSKSYSMRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNVAKSKRMWLSRRVFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query144 2.2.26 [Sep-21-2011]
Q3T013219 BCL2/adenovirus E1B 19 kD yes N/A 0.708 0.465 0.365 7e-12
O60238219 BCL2/adenovirus E1B 19 kD yes N/A 0.708 0.465 0.355 2e-11
Q9Z2F7218 BCL2/adenovirus E1B 19 kD yes N/A 0.708 0.467 0.346 3e-11
Q12983194 BCL2/adenovirus E1B 19 kD no N/A 0.652 0.484 0.375 1e-10
O55003187 BCL2/adenovirus E1B 19 kD no N/A 0.652 0.502 0.384 4e-10
Q09969221 NIP3 homolog OS=Caenorhab yes N/A 0.493 0.321 0.369 2e-09
A8XPY4220 BNIP3 homolog OS=Caenorha N/A N/A 0.506 0.331 0.378 4e-09
Q32KN2196 BCL2/adenovirus E1B 19 kD no N/A 0.569 0.418 0.383 2e-07
>sp|Q3T013|BNI3L_BOVIN BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like OS=Bos taurus GN=BNIP3L PE=2 SV=1 Back     alignment and function desciption
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 21  NTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHPK-SKS 79
           + E+ T  DH        A  ++ V    KS DW+ DWSSRP+  PPK++ FRHPK S S
Sbjct: 107 DVEMHTSKDHSSQSEEEVAEGEKEVDALKKSVDWVSDWSSRPENIPPKEFHFRHPKRSVS 166

Query: 80  YSMRYA-KVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRR 122
            SMR +  + K  +FS E +     +  +S +L  G+G+++ +R
Sbjct: 167 LSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKR 210




Induces apoptosis. Interacts with viral and cellular anti-apoptosis proteins. Can overcome the suppressors BCL-2 and BCL-XL, although high levels of BCL-XL expression will inhibit apoptosis. Inhibits apoptosis induced by BNIP3. Involved in mitochondrial quality control via its interaction with SPATA18/MIEAP: in response to mitochondrial damage, participates to mitochondrial protein catabolic process (also named MALM) leading to the degradation of damaged proteins inside mitochondria. May function as a tumor suppressor.
Bos taurus (taxid: 9913)
>sp|O60238|BNI3L_HUMAN BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like OS=Homo sapiens GN=BNIP3L PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2F7|BNI3L_MOUSE BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like OS=Mus musculus GN=Bnip3l PE=1 SV=1 Back     alignment and function description
>sp|Q12983|BNIP3_HUMAN BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 OS=Homo sapiens GN=BNIP3 PE=1 SV=2 Back     alignment and function description
>sp|O55003|BNIP3_MOUSE BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 OS=Mus musculus GN=Bnip3 PE=1 SV=1 Back     alignment and function description
>sp|Q09969|BNIP3_CAEEL NIP3 homolog OS=Caenorhabditis elegans GN=dct-1 PE=1 SV=2 Back     alignment and function description
>sp|A8XPY4|BNIP3_CAEBR BNIP3 homolog OS=Caenorhabditis briggsae GN=dct-1 PE=3 SV=2 Back     alignment and function description
>sp|Q32KN2|BNIP3_BOVIN BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 OS=Bos taurus GN=BNIP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
242014013195 BCL2/adenovirus E1B 19 kDa protein-inter 0.784 0.579 0.747 1e-44
193678780192 PREDICTED: NIP3 homolog [Acyrthosiphon p 0.812 0.609 0.7 4e-43
350397035193 PREDICTED: BCL2/adenovirus E1B 19 kDa pr 0.805 0.601 0.677 2e-41
340725858193 PREDICTED: BCL2/adenovirus E1B 19 kDa pr 0.805 0.601 0.677 3e-41
157114097214 hypothetical protein AaeL_AAEL006711 [Ae 0.791 0.532 0.6 1e-39
383851828192 PREDICTED: BCL2/adenovirus E1B 19 kDa pr 0.791 0.593 0.672 3e-39
328783565193 PREDICTED: BCL2/adenovirus E1B 19 kDa pr 0.798 0.595 0.669 1e-38
347965839 266 AGAP001411-PB [Anopheles gambiae str. PE 0.777 0.421 0.552 3e-36
347965841184 AGAP001411-PA [Anopheles gambiae str. PE 0.777 0.608 0.552 9e-36
345483008191 PREDICTED: hypothetical protein LOC10012 0.784 0.591 0.591 2e-35
>gi|242014013|ref|XP_002427693.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein, putative [Pediculus humanus corporis] gi|212512123|gb|EEB14955.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 103/115 (89%), Gaps = 2/115 (1%)

Query: 12  SPKSPPNSPNTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWK 71
           SPKSPPNSPNTEL+TED+  +GVYIN+  KD  V N D ++DWIWDWSSRP+QAPPKDWK
Sbjct: 77  SPKSPPNSPNTELNTEDE-FRGVYINYLCKDG-VLNLDSNSDWIWDWSSRPEQAPPKDWK 134

Query: 72  FRHPKSKSYSMRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLI 126
           F+HPK K+YS+R AKVG+NSLFSKEV+YTLF+TN IS+LLGTGVG+WLSRRG++I
Sbjct: 135 FKHPKRKTYSIRNAKVGRNSLFSKEVLYTLFITNFISLLLGTGVGLWLSRRGLII 189




Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193678780|ref|XP_001951493.1| PREDICTED: NIP3 homolog [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350397035|ref|XP_003484747.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340725858|ref|XP_003401282.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|157114097|ref|XP_001657980.1| hypothetical protein AaeL_AAEL006711 [Aedes aegypti] gi|108877450|gb|EAT41675.1| AAEL006711-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|383851828|ref|XP_003701433.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328783565|ref|XP_393165.3| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|347965839|ref|XP_003435820.1| AGAP001411-PB [Anopheles gambiae str. PEST] gi|333470330|gb|EGK97593.1| AGAP001411-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347965841|ref|XP_551422.3| AGAP001411-PA [Anopheles gambiae str. PEST] gi|333470329|gb|EAL38602.3| AGAP001411-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|345483008|ref|XP_001605739.2| PREDICTED: hypothetical protein LOC100120393 isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
FB|FBgn0037007201 CG5059 [Drosophila melanogaste 0.680 0.487 0.405 1.8e-16
UNIPROTKB|Q12983194 BNIP3 "BCL2/adenovirus E1B 19 0.569 0.422 0.404 7.9e-14
ZFIN|ZDB-GENE-030131-8060196 bnip3 "BCL2/adenovirus E1B int 0.506 0.372 0.44 1.3e-13
UNIPROTKB|Q005W6194 BNIP3 "BNIP3" [Canis lupus fam 0.569 0.422 0.404 1.6e-13
RGD|620800187 Bnip3 "BCL2/adenovirus E1B int 0.555 0.427 0.402 1.6e-13
UNIPROTKB|F1NNM4192 BNIP3 "Uncharacterized protein 0.555 0.416 0.414 2.1e-13
UNIPROTKB|Q3T013219 BNIP3L "BCL2/adenovirus E1B 19 0.694 0.456 0.372 2.1e-13
MGI|MGI:109326187 Bnip3 "BCL2/adenovirus E1B int 0.555 0.427 0.402 2.1e-13
ZFIN|ZDB-GENE-050703-8187 zgc:73226 "zgc:73226" [Danio r 0.5 0.385 0.438 3.4e-13
UNIPROTKB|B0AZS9179 BNIP3L "BCL2/adenovirus E1B 19 0.694 0.558 0.362 5.6e-13
FB|FBgn0037007 CG5059 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 43/106 (40%), Positives = 65/106 (61%)

Query:    28 DDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPD----QAPPKDWKFRHPKSKS---Y 80
             DD L+ VYIN+  K     N     DW+ +W+  P     +   +D      K K+   Y
Sbjct:    91 DDELRNVYINYWTKGGDKQNAGNE-DWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGY 149

Query:    81 SMRYAKVGKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLI 126
             S+R  ++G NSLFS+E++Y+L VTN++S+LLG G G+WLS+RG+L+
Sbjct:   150 SIRLKRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILL 195




GO:0043065 "positive regulation of apoptotic process" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0005740 "mitochondrial envelope" evidence=IEA
UNIPROTKB|Q12983 BNIP3 "BCL2/adenovirus E1B 19 kDa protein-interacting protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8060 bnip3 "BCL2/adenovirus E1B interacting protein 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q005W6 BNIP3 "BNIP3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|620800 Bnip3 "BCL2/adenovirus E1B interacting protein 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNM4 BNIP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T013 BNIP3L "BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:109326 Bnip3 "BCL2/adenovirus E1B interacting protein 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050703-8 zgc:73226 "zgc:73226" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B0AZS9 BNIP3L "BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
pfam06553197 pfam06553, BNIP3, BNIP3 3e-40
>gnl|CDD|219086 pfam06553, BNIP3, BNIP3 Back     alignment and domain information
 Score =  133 bits (335), Expect = 3e-40
 Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 12  SPKSPPNSPNTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWK 71
           SP  P  SP TEL  E D L+ VYI    +        K+TDWIWDWSSRP+  PPK++K
Sbjct: 76  SPTPPQESPQTELDVEMDSLRDVYIQSEEEAGEKLKEVKNTDWIWDWSSRPENIPPKEFK 135

Query: 72  FRHPK-SKSYSMRYAKVGKN-SLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASN 129
           F HPK S S S+R  +V K   LFS E +     T ++S LLG G+G+++ +R  L+  +
Sbjct: 136 FVHPKRSVSLSIRKTRVMKKGGLFSAEFLKVFLPTLLLSHLLGLGLGIYIGKRLTLLTRS 195

Query: 130 V 130
            
Sbjct: 196 T 196


This family consists of several mammalian specific BCL2/adenovirus E1B 19-kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerisation, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterized by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation. Length = 197

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 144
PF06553197 BNIP3: BNIP3; InterPro: IPR010548 This family cons 100.0
>PF06553 BNIP3: BNIP3; InterPro: IPR010548 This family consists of several mammalian specific BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 or BNIP3 sequences Back     alignment and domain information
Probab=100.00  E-value=6.6e-51  Score=329.89  Aligned_cols=125  Identities=35%  Similarity=0.621  Sum_probs=35.9

Q ss_pred             ccCCCCCCCCCCCCCCCCCCcccccccceeeeeeehhhhhhcCCCCCcceeccCCCCCCCCCCceeeecC-CCCccccee
Q psy14433          6 DLGNSFSPKSPPNSPNTELSTEDDHLKGVYINFANKDELVANFDKSTDWIWDWSSRPDQAPPKDWKFRHP-KSKSYSMRY   84 (144)
Q Consensus         6 ~~~~~~SPksppnSp~~E~~~~~~eL~~vyiny~~~~~~~~~lkKn~DWVwDWSSRPEniPPKef~frhP-~~~slSmR~   84 (144)
                      .++|+.+|++|++++|+||..+.++.++||+||.........-.||+||||||||||||+|||||+|+|| ++++||||+
T Consensus        70 ~dSP~~s~~p~~~~~~~~~~~~~~~~~~~~~qsee~~~e~~~~~k~~DWvwDWSSRPEniPPKef~f~hPkr~~~lS~r~  149 (197)
T PF06553_consen   70 CDSPPRSPSPPQNSPQIEFDVEMDESRDVSSQSEEDVGEREKEVKNADWVWDWSSRPENIPPKEFHFKHPKRSVSLSMRK  149 (197)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCCCcCCCccccccccCCCCccchhhccchhhhhcccccHHHHHhccCcccCCCcceEEECCCCCCCccccc
Confidence            4677778889999999999887799999999999987665532389999999999999999999999999 779999999


Q ss_pred             eec-cCCcccchhhhhhhhHHHHHHHHHhhceeeeeecccchhhhhh
Q psy14433         85 AKV-GKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGMLIASNV  130 (144)
Q Consensus        85 s~v-~K~glFS~e~L~~flps~llShlL~~GlGiyIGKR~~l~~~~~  130 (144)
                      ++| ||+||||+|||++||||||+|||||+|||||||||++..++..
T Consensus       150 t~v~k~~glfS~e~l~~flpslllS~lL~~GlGiyIgkRl~t~s~st  196 (197)
T PF06553_consen  150 TRVMKKGGLFSAEFLKVFLPSLLLSHLLGLGLGIYIGKRLATPSAST  196 (197)
T ss_dssp             SS-----SSSTHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             cccccccccccHHHHHHHhHHHHHHHHHhcccEEEEecccccCcCCC
Confidence            999 7779999999999999999999999999999999999888754



BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerisation, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterised by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation [].; GO: 0043065 positive regulation of apoptosis, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 2KA1_B 2KA2_A 2J5D_A.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query144
2j5d_A45 BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-inter 99.68
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A Back     alignment and structure
Probab=99.68  E-value=3.3e-18  Score=111.29  Aligned_cols=42  Identities=31%  Similarity=0.554  Sum_probs=40.2

Q ss_pred             eeeec-cCCcccchhhhhhhhHHHHHHHHHhhceeeeeecccc
Q psy14433         83 RYAKV-GKNSLFSKEVMYTLFVTNIISILLGTGVGMWLSRRGM  124 (144)
Q Consensus        83 R~s~v-~K~glFS~e~L~~flps~llShlL~~GlGiyIGKR~~  124 (144)
                      ||+++ ||+|+||+|||++|+|++++||+|++|+|||||||++
T Consensus         1 r~s~~mKkggi~sa~flk~~~psll~shiL~~GlgIyIGkRLs   43 (45)
T 2j5d_A            1 RNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLT   43 (45)
T ss_dssp             CCCCCCCCCSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhcCCeeehHHHHHHhhHHHHHHHHHhcceEEeeeeec
Confidence            67888 8899999999999999999999999999999999986




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00