Psyllid ID: psy14439

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MARGSLNSDLHSHLPSINEVGSDRNMKAEPISPNSMVSYSRSNSNGSFQSASNNVGNNSSSSGHEDEESGSPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIANSDSH
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccc
margslnsdlhshlpsinevgsdrnmkaepispnsmvsysrsnsngsfqsasnnvgnnssssghedeesgsplnyKERRREAHTQAEQKRRDAIKKGYDSLqdlvptchqtdssgyklskATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAqqtplgqtearLSDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEeyckpqtlKQNIASVLSRIANSDSH
margslnsdlhshlpsinevgsdrnmKAEPISPNSMVSYSRSNSNGSFQSASNNVGnnssssghedeesgsplnykerrREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSriansdsh
MARGSLNSDLHSHLPSINEVGSDRNMKAEPISPNSMVSYSRSNSNGSFQsasnnvgnnssssghedeesgsPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIANSDSH
*******************************************************************************************************LVPTCHQT**SGYKLSKATVLQKSIDYIQFLVQQKKKL***RNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVL*********
************************************************************************************QAEQKRRDAIKKGYDSLQDLV*****************VLQKSIDYIQFLV***********************************************EVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVL**IA*****
**********HSHLPSINEVGSDRNMKAEPISPNSMVSYSRSNSNGSFQS******************************************AIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIANSDSH
*************************************************************************NYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQ********ARLSDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIA*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MARGSLNSDLHSHLPSINEVGSDRNMKAEPISPNSMVSYSRSNSNGSFQSASNNVGNNSSSSGHEDEESGSPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIANSDSH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
Q9UH92298 Max-like protein X OS=Hom no N/A 0.828 0.681 0.544 2e-52
O08609298 Max-like protein X OS=Mus no N/A 0.828 0.681 0.539 6e-52
Q99MZ3864 Carbohydrate-responsive e no N/A 0.669 0.189 0.336 4e-16
Q8VIP2865 Carbohydrate-responsive e no N/A 0.669 0.189 0.331 2e-15
Q9NP71852 Carbohydrate-responsive e no N/A 0.669 0.192 0.336 3e-15
Q2VPU4917 MLX-interacting protein O no N/A 0.873 0.233 0.268 2e-14
Q9HAP2919 MLX-interacting protein O no N/A 0.869 0.231 0.290 2e-14
P418461009 Protein WBSCR14 homolog O yes N/A 0.681 0.165 0.253 2e-08
Q63665346 Upstream stimulatory fact no N/A 0.269 0.190 0.388 3e-06
Q64705346 Upstream stimulatory fact no N/A 0.269 0.190 0.388 3e-06
>sp|Q9UH92|MLX_HUMAN Max-like protein X OS=Homo sapiens GN=MLX PE=1 SV=2 Back     alignment and function desciption
 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/213 (54%), Positives = 153/213 (71%), Gaps = 10/213 (4%)

Query: 39  YSRSNSNGSFQSASNNVGNNSSSS--GHEDEES-----GSPLNYKERRREAHTQAEQKRR 91
           +  S   GS  S +N++G+ S+SS    +DE+S         +YK+RRR AHTQAEQKRR
Sbjct: 83  FVESTRKGSVVSRANSIGSTSASSVPNTDDEDSDYHQEAYKESYKDRRRRAHTQAEQKRR 142

Query: 92  DAIKKGYDSLQDLVPTCHQTDSS--GYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLR 149
           DAIK+GYD LQ +VPTC Q D S    KLSKA VLQK+IDYIQFL ++KKK EEE + LR
Sbjct: 143 DAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLR 202

Query: 150 KEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFSTF-CNVGVSNF 208
           K+V AL+IM+ NY+ +VKA Q    + E ++SD+VKF VFQ IMD LF +F  ++ V++F
Sbjct: 203 KDVTALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASF 262

Query: 209 SELSACVFSWLEEYCKPQTLKQNIASVLSRIAN 241
            ELSACVFSW+EE+CKPQTL++ +  VL ++ N
Sbjct: 263 QELSACVFSWIEEHCKPQTLREIVIGVLHQLKN 295
Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MAD1, MAD4, MNT, WBSCR14 and MLXIP which recognizes the core sequence 5'-CACGTG-3'. The TCFL4-MAD1, TCFL4-MAD4, TCFL4-WBSCR14 complexes are transcriptional repressors. Plays a role in transcriptional activation of glycolytic target genes. Involved in glucose-responsive gene regulation.
Homo sapiens (taxid: 9606)
>sp|O08609|MLX_MOUSE Max-like protein X OS=Mus musculus GN=Mlx PE=1 SV=1 Back     alignment and function description
>sp|Q99MZ3|MLXPL_MOUSE Carbohydrate-responsive element-binding protein OS=Mus musculus GN=Mlxipl PE=1 SV=1 Back     alignment and function description
>sp|Q8VIP2|MLXPL_RAT Carbohydrate-responsive element-binding protein OS=Rattus norvegicus GN=Mlxipl PE=1 SV=1 Back     alignment and function description
>sp|Q9NP71|MLXPL_HUMAN Carbohydrate-responsive element-binding protein OS=Homo sapiens GN=MLXIPL PE=1 SV=1 Back     alignment and function description
>sp|Q2VPU4|MLXIP_MOUSE MLX-interacting protein OS=Mus musculus GN=Mlxip PE=1 SV=1 Back     alignment and function description
>sp|Q9HAP2|MLXIP_HUMAN MLX-interacting protein OS=Homo sapiens GN=MLXIP PE=1 SV=2 Back     alignment and function description
>sp|P41846|WBS14_CAEEL Protein WBSCR14 homolog OS=Caenorhabditis elegans GN=mml-1 PE=2 SV=2 Back     alignment and function description
>sp|Q63665|USF2_RAT Upstream stimulatory factor 2 OS=Rattus norvegicus GN=Usf2 PE=1 SV=2 Back     alignment and function description
>sp|Q64705|USF2_MOUSE Upstream stimulatory factor 2 OS=Mus musculus GN=Usf2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
326500038235 predicted protein [Hordeum vulgare subsp 0.844 0.880 0.718 1e-82
193582552235 PREDICTED: max-like protein X-like [Acyr 0.844 0.880 0.718 1e-82
307175350229 Max-like protein X [Camponotus floridanu 0.865 0.925 0.693 1e-82
239789456235 ACYPI008046 [Acyrthosiphon pisum] 0.844 0.880 0.713 3e-82
383857319244 PREDICTED: max-like protein X-like [Mega 0.873 0.877 0.682 7e-82
328778252254 PREDICTED: max-like protein X-like [Apis 0.865 0.834 0.684 2e-81
340726198244 PREDICTED: max-like protein X-like [Bomb 0.865 0.868 0.684 2e-81
332019842256 Max-like protein X [Acromyrmex echinatio 0.885 0.847 0.665 4e-80
380020961254 PREDICTED: max-like protein X-like [Apis 0.840 0.811 0.694 1e-79
345494329259 PREDICTED: max-like protein X-like isofo 0.861 0.814 0.665 3e-78
>gi|326500038|dbj|BAJ90854.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 158/220 (71%), Positives = 179/220 (81%), Gaps = 13/220 (5%)

Query: 25  NMKAEPISPNSMVSYSRSNSNGSFQSASN---NVGNNSSSSGHED---EESGSPLNYKER 78
           +MK EP SP         N+N   +S+S    + GN+SSSSGHED   EE GSP NYKER
Sbjct: 8   DMKVEPSSP-------VRNTNPFSRSSSGSSLHAGNHSSSSGHEDDDSEEKGSPNNYKER 60

Query: 79  RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138
           RREAHTQAEQKRRDAIKKGYD LQDLVPTC QTDSSGYKLSKATVLQKSIDYIQ+L+ QK
Sbjct: 61  RREAHTQAEQKRRDAIKKGYDCLQDLVPTCQQTDSSGYKLSKATVLQKSIDYIQYLLLQK 120

Query: 139 KKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSIMDELFS 198
           KKLEEERN LRKEVVALRIMQANY+ MVKAQQ P+G  E R+ DE KFQ+FQ+I+DELF 
Sbjct: 121 KKLEEERNALRKEVVALRIMQANYEQMVKAQQIPMGHVETRIPDEEKFQMFQNIIDELFF 180

Query: 199 TFCNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSR 238
           TFCN+ V+NF+ELSACVFSWLEE+CKPQTL+  I +VL +
Sbjct: 181 TFCNINVNNFTELSACVFSWLEEHCKPQTLQNLIETVLEK 220

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|193582552|ref|XP_001947371.1| PREDICTED: max-like protein X-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307175350|gb|EFN65369.1| Max-like protein X [Camponotus floridanus] Back     alignment and taxonomy information
>gi|239789456|dbj|BAH71353.1| ACYPI008046 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383857319|ref|XP_003704152.1| PREDICTED: max-like protein X-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328778252|ref|XP_395909.3| PREDICTED: max-like protein X-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340726198|ref|XP_003401448.1| PREDICTED: max-like protein X-like [Bombus terrestris] gi|350405507|ref|XP_003487455.1| PREDICTED: max-like protein X-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332019842|gb|EGI60303.1| Max-like protein X [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380020961|ref|XP_003694343.1| PREDICTED: max-like protein X-like [Apis florea] Back     alignment and taxonomy information
>gi|345494329|ref|XP_001601355.2| PREDICTED: max-like protein X-like isoform 1 [Nasonia vitripennis] gi|345494331|ref|XP_003427271.1| PREDICTED: max-like protein X-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
ZFIN|ZDB-GENE-050522-316247 mlx "MAX-like protein X" [Dani 0.897 0.890 0.517 7.2e-52
UNIPROTKB|F1MD86244 MLX "Uncharacterized protein" 0.685 0.688 0.608 2.2e-50
UNIPROTKB|F1S1D8298 MLX "Uncharacterized protein" 0.685 0.563 0.608 2.2e-50
UNIPROTKB|Q9UH92298 MLX "Max-like protein X" [Homo 0.685 0.563 0.608 2.8e-50
UNIPROTKB|E2RIC0298 MLX "Uncharacterized protein" 0.685 0.563 0.608 3.6e-50
MGI|MGI:108398298 Mlx "MAX-like protein X" [Mus 0.959 0.788 0.477 3.6e-50
RGD|1308590244 Mlx "MLX, MAX dimerization pro 0.685 0.688 0.602 7.4e-50
UNIPROTKB|D4A6D4214 Mlx "Protein Mlx" [Rattus norv 0.685 0.785 0.602 7.4e-50
UNIPROTKB|E9PTI8244 Mlx "Protein Mlx" [Rattus norv 0.685 0.688 0.602 7.4e-50
FB|FBgn0039509254 bigmax "bigmax" [Drosophila me 0.685 0.661 0.595 2.5e-49
ZFIN|ZDB-GENE-050522-316 mlx "MAX-like protein X" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 118/228 (51%), Positives = 154/228 (67%)

Query:    16 SINEVGSDRNMKAEPISPNSMVSYSRSNSNGSFQXXXXXXXXXXXXXXXXXXXXXXPLNY 75
             + ++ G D +  AE     S+VS  R+NS GS                          +Y
Sbjct:    19 TFSDNGFDHSFFAESARKGSLVS--RANSIGSTSASSVPNTDDEDSDNRHETPYKE--SY 74

Query:    76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQ-TDSS--GYKLSKATVLQKSIDYIQ 132
             K+RRR AHTQAEQKRRDAIKKGYD LQ +VPTC Q +D S    K+SKATVLQK+IDYIQ
Sbjct:    75 KDRRRHAHTQAEQKRRDAIKKGYDDLQSIVPTCQQQSDFSMATQKMSKATVLQKTIDYIQ 134

Query:   133 FLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEARLSDEVKFQVFQSI 192
             FL ++KKK EE+ + LRKEV+AL++M+ NY+ +VKA Q    Q   ++SD+VKF VFQSI
Sbjct:   135 FLHKEKKKQEEDVSTLRKEVMALKVMKTNYEHIVKAHQNNPQQGSEQVSDQVKFSVFQSI 194

Query:   193 MDELFSTF-CNVGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRI 239
             MD LF +F  +V VS+F ELSACVFSW+EE+CKPQTL++ + +VL ++
Sbjct:   195 MDSLFQSFSASVSVSSFQELSACVFSWIEEHCKPQTLREFVVTVLQQV 242
GO:0046983 "protein dimerization activity" evidence=IEA
UNIPROTKB|F1MD86 MLX "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1D8 MLX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UH92 MLX "Max-like protein X" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIC0 MLX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:108398 Mlx "MAX-like protein X" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308590 Mlx "MLX, MAX dimerization protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4A6D4 Mlx "Protein Mlx" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTI8 Mlx "Protein Mlx" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0039509 bigmax "bigmax" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 5e-15
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 2e-14
smart0035353 smart00353, HLH, helix loop helix domain 1e-11
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information 
 Score = 66.7 bits (164), Expect = 5e-15
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 5/56 (8%)

Query: 79  RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFL 134
           RR+AH + E++RRD I   ++ L++L+PT         KLSKA +L+ +I+YI+ L
Sbjct: 1   RRKAHNERERRRRDRINDAFEELRELLPTPPNK-----KLSKAEILRLAIEYIKHL 51

Length = 52
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
KOG1319|consensus229 100.0
KOG3582|consensus856 99.92
KOG1318|consensus411 99.66
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.59
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.5
smart0035353 HLH helix loop helix domain. 99.36
KOG2483|consensus232 99.19
KOG4304|consensus250 98.92
KOG0561|consensus 373 98.87
KOG2588|consensus 953 98.84
KOG3561|consensus 803 98.81
KOG3960|consensus284 98.37
KOG4029|consensus228 98.31
PLN0321793 transcription factor ATBS1; Provisional 98.26
KOG3910|consensus632 98.0
KOG4447|consensus173 97.74
KOG3898|consensus254 96.98
KOG4395|consensus285 96.92
COG307479 Uncharacterized protein conserved in bacteria [Fun 92.94
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 92.9
smart0033865 BRLZ basic region leucin zipper. 92.12
KOG3119|consensus269 92.0
PRK1542279 septal ring assembly protein ZapB; Provisional 91.01
KOG3558|consensus 768 90.86
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 90.82
KOG3582|consensus856 90.51
KOG0709|consensus472 89.17
KOG4447|consensus173 86.71
PF1088387 DUF2681: Protein of unknown function (DUF2681); In 85.65
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 82.76
KOG4005|consensus292 82.7
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 82.09
KOG3560|consensus 712 80.87
PRK14127109 cell division protein GpsB; Provisional 80.63
>KOG1319|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.7e-50  Score=337.87  Aligned_cols=210  Identities=54%  Similarity=0.803  Sum_probs=193.6

Q ss_pred             CCCCCCCCCCCCCccccCCCCCCcccCCCCCCCCCCCCCCCCCCCC-----CCcchhhhHHHHhHHHHHHHHHHHHHHHH
Q psy14439         25 NMKAEPISPNSMVSYSRSNSNGSFQSASNNVGNNSSSSGHEDEESG-----SPLNYKERRREAHTQAEQKRRDAIKKGYD   99 (245)
Q Consensus        25 ~~~~~P~sp~~~~~~Sr~sS~~s~~~~~~~~~~~s~~~~~~~ed~~-----~~~~~~~~rR~~H~~~ErkRR~~In~~f~   99 (245)
                      +.++.-++.-.+..++++++.|+.        ++++++|++++|++     .+.+|+++||.+|..+||+||+.||.|++
T Consensus        11 ~~g~~~~s~~k~~~~sr~Ss~GSt--------sssSApNtdd~ds~~hS~a~k~syk~rrr~aHtqaEqkRRdAIk~GYd   82 (229)
T KOG1319|consen   11 DPGLFVESTRKGSVVSRASSIGST--------SASSAPNTDDEDSDYHSEAYKESYKDRRRRAHTQAEQKRRDAIKRGYD   82 (229)
T ss_pred             CcccccccccCcchhhhcCCCCCC--------CCCCCCCCCcccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            344445555567778999999984        34778899888877     46788999999999999999999999999


Q ss_pred             HHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q psy14439        100 SLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALRIMQANYDIMVKAQQTPLGQTEAR  179 (245)
Q Consensus       100 ~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~~~~~~~e~~~~~~~~~~~~v~~r  179 (245)
                      .|+.|||.|...+.++.|++||.||+|+||||.+|++++.+.++|+..|++++.+|++.+.+||+|+..++..++..+.|
T Consensus        83 dLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YEqM~~~~qdnp~~~e~~  162 (229)
T KOG1319|consen   83 DLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVNYEQMVKAHQDNPHEGEDQ  162 (229)
T ss_pred             HHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhh
Confidence            99999999998776778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHhHHhhHHHhhhhcC-CCCCChHHHHHhHHHHhhhcCChhhhHHHHHHHHHHhhhc
Q psy14439        180 LSDEVKFQVFQSIMDELFSTFCN-VGVSNFSELSACVFSWLEEYCKPQTLKQNIASVLSRIANS  242 (245)
Q Consensus       180 ~~~~~kf~if~~i~~~lf~sf~~-vs~~s~~~l~~~~~~W~~~~c~~~~lr~~v~~~l~~l~~~  242 (245)
                      +.|..||.||+.|||.||+||+. |++++|++|.+|+++|||+||+|.+||.++..+|.+...+
T Consensus       163 ~~d~~kf~vfQ~imd~~F~sF~~~i~~~~f~~lT~~i~sWvEehckp~~lr~i~~g~l~qMpk~  226 (229)
T KOG1319|consen  163 VSDQVKFNVFQGIMDSLFQSFNASISVASFQELTACVFSWIEEHCKPQTLREIVIGVLHQMPKN  226 (229)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHcccc
Confidence            99999999999999999999998 9999999999999999999999999999999999998643

>KOG3582|consensus Back     alignment and domain information
>KOG1318|consensus Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG2483|consensus Back     alignment and domain information
>KOG4304|consensus Back     alignment and domain information
>KOG0561|consensus Back     alignment and domain information
>KOG2588|consensus Back     alignment and domain information
>KOG3561|consensus Back     alignment and domain information
>KOG3960|consensus Back     alignment and domain information
>KOG4029|consensus Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG3910|consensus Back     alignment and domain information
>KOG4447|consensus Back     alignment and domain information
>KOG3898|consensus Back     alignment and domain information
>KOG4395|consensus Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>KOG3119|consensus Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>KOG3558|consensus Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>KOG3582|consensus Back     alignment and domain information
>KOG0709|consensus Back     alignment and domain information
>KOG4447|consensus Back     alignment and domain information
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>KOG4005|consensus Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG3560|consensus Back     alignment and domain information
>PRK14127 cell division protein GpsB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1r05_A87 Solution Structure Of Max B-Hlh-Lz Length = 87 8e-06
4h10_A73 Intermolecular Recognition Revealed By The Complex 1e-05
1hlo_A80 The Crystal Structure Of An Intact Human Max-Dna Co 2e-05
1nlw_B76 Crystal Structure Of Mad-Max Recognizing Dna Length 2e-05
1nkp_B83 Crystal Structure Of Myc-Max Recognizing Dna Length 3e-05
1an2_A86 Recognition By Max Of Its Cognate Dna Through A Dim 3e-05
4f3l_B 387 Crystal Structure Of The Heterodimeric Clock:bmal1 3e-05
1am9_A82 Human Srebp-1a Bound To Ldl Receptor Promoter Lengt 8e-05
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz Length = 87 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 79  RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138
           +R  H   E+KRRD IK  + SL+D VP+       G K S+A +L K+ +YIQ++ ++ 
Sbjct: 4   KRAHHNALERKRRDHIKDSFHSLRDSVPSL-----QGEKASRAQILDKATEYIQYMRRKV 58
Query: 139 KKLEEERNGLRKEVVAL 155
             L+++ + L+++   L
Sbjct: 59  HTLQQDIDDLKRQNALL 75
>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex Structure Of Human Clock-bmal1 Basic Helix-loop-helix Domains With E-box Dna Length = 73 Back     alignment and structure
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex: New Insights Into Mechanisms Of Transcriptional Control Length = 80 Back     alignment and structure
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna Length = 76 Back     alignment and structure
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna Length = 83 Back     alignment and structure
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric BHLHZ DOMAIN Length = 86 Back     alignment and structure
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1 Transcriptional Activator Complex Length = 387 Back     alignment and structure
>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter Length = 82 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1hlo_A80 Protein (transcription factor MAX); transcriptiona 2e-23
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 3e-22
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 4e-22
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 7e-21
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 2e-19
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 3e-13
1a0a_A63 BHLH, protein (phosphate system positive regulator 3e-11
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 1e-05
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 3e-05
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 4e-05
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 7e-05
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
 Score = 88.9 bits (221), Expect = 2e-23
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 69  SGSPLNYKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSI 128
               +     +R  H   E+KRRD IK  + SL+D VP+       G K S+A +L K+ 
Sbjct: 2   DDIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSL-----QGEKASRAQILDKAT 56

Query: 129 DYIQFLVQQKKKLEEERNGLRKE 151
           +YIQ++ ++    +++ + L+++
Sbjct: 57  EYIQYMRRKNHTHQQDIDDLKRQ 79
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.81
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.81
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.8
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.8
4ati_A118 MITF, microphthalmia-associated transcription fact 99.79
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.78
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.71
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.66
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.65
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.62
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.6
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.51
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.49
4ath_A83 MITF, microphthalmia-associated transcription fact 99.47
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 99.11
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 99.06
4f3l_A 361 Mclock, circadian locomoter output cycles protein 99.02
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 98.75
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 95.89
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 94.62
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 94.47
3ra3_B28 P2F; coiled coil domain, fiber, KIH interactions, 92.94
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 91.94
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 91.66
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 91.45
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 91.23
1uii_A83 Geminin; human, DNA replication, cell cycle; 2.00A 90.13
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 89.99
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 89.65
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 89.38
3v86_A27 De novo design helix; computational design of A pr 89.33
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 89.29
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 88.85
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 88.2
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 87.24
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 86.51
1wlq_A83 Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z 86.38
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 85.88
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 85.71
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 85.52
2wvr_A209 Geminin; DNA replication license, DNA replication 85.32
3ra3_B28 P2F; coiled coil domain, fiber, KIH interactions, 85.08
1kd8_A36 GABH AIV, GCN4 acid base heterodimer acid-D12IA16V 84.85
3muj_A138 Transcription factor COE3; immunoglobulin like fol 84.05
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 83.09
2zxx_A79 Geminin; coiled-coil, cell cycle, coiled coil, DNA 82.04
3a2a_A58 Voltage-gated hydrogen channel 1; voltage-gated pr 81.14
3vmx_A48 Voltage-gated hydrogen channel 1; coiled-coil, ION 80.81
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 80.67
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
Probab=99.81  E-value=2e-19  Score=135.66  Aligned_cols=81  Identities=27%  Similarity=0.425  Sum_probs=74.1

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439         77 ERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVALR  156 (245)
Q Consensus        77 ~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L~  156 (245)
                      ..+|..||.+||+||+.||++|..|+.+||.+..    +.|+||++||.+||+||+.|+.++..+..+++.|+++.+.|+
T Consensus         4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~----~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~   79 (88)
T 1nkp_A            4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELEN----NEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLK   79 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTT----CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999853    459999999999999999999999999999999999999997


Q ss_pred             HHHHH
Q psy14439        157 IMQAN  161 (245)
Q Consensus       157 ~~~~~  161 (245)
                      ..+..
T Consensus        80 ~rl~~   84 (88)
T 1nkp_A           80 HKLEQ   84 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic} Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1 Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic} Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A* Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} Back     alignment and structure
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic} Back     alignment and structure
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A Back     alignment and structure
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus} Back     alignment and structure
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens} Back     alignment and structure
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus} Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 3e-16
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 3e-16
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 3e-16
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 4e-16
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 1e-15
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 3e-15
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 2e-11
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 1e-10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 3e-16
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 79  RREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQK 138
           +R  H   E+KRRD IK  + SL+D VP+       G K S+A +L K+ +YIQ++ ++ 
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-----GEKASRAQILDKATEYIQYMRRKN 56

Query: 139 KKLEEERNGLRKEVVALR 156
              +++ + L+++   L 
Sbjct: 57  HTHQQDIDDLKRQNALLE 74
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.79
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.77
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.69
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.63
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.63
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.49
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.6e-19  Score=132.10  Aligned_cols=82  Identities=27%  Similarity=0.415  Sum_probs=74.3

Q ss_pred             hhhHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14439         76 KERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCHQTDSSGYKLSKATVLQKSIDYIQFLVQQKKKLEEERNGLRKEVVAL  155 (245)
Q Consensus        76 ~~~rR~~H~~~ErkRR~~In~~f~~L~~lVP~~~~~~~~~~K~sKa~IL~kAi~YI~~Lq~~~~~l~~e~~~L~~ei~~L  155 (245)
                      ...||..||.+||+||+.||++|+.|+.+||.+..    ..|++|++||.+||+||+.|++++..+.++++.|+++.+.|
T Consensus         3 ~~~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~----~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L   78 (88)
T d1nkpa_           3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELEN----NEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQL   78 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTT----CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999998754    45899999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q psy14439        156 RIMQAN  161 (245)
Q Consensus       156 ~~~~~~  161 (245)
                      ....++
T Consensus        79 ~~~l~~   84 (88)
T d1nkpa_          79 KHKLEQ   84 (88)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure