Psyllid ID: psy14488

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37

MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKSITQKI

ccccccccHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHcccccccEEEEEcccccccccEEEEEEEccccccccEEEEEEcccccHHHHcccHHHHHHHHHcccccccccccEEEEEEccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHcccHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHc

ccHHccccHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccEEHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHccccccccEEEEccccccccccEEEEEEcccccccccEEEEEEcccccHHHHHccHHHHHHHHcccHHHccccccEEEEEEccccEEEEccHcccHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHHccHHHHHHcccccccHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcc

mfwrnlinpyerewknncsrwDLINVIKAFYvlspygitwpyknngkpsfklEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEigwpiarpffYITHMFSskhsyislmwpicihpmnknILITWNLLHDPKKFLLNDINKIRDYLCFkknsfkedipismihlnrspiviSNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYkinnsdlelnIDEELYNnfiskkdnLKLAILrsmspkklsnvnfcfenKKLEELIFLYRARNFIETLSYKELKRWKKYRISRfynkknnlyNINMFYLEIESLLKKANEHDTKILNALLMYGKSITQKI

mfwrnlinpyerewknncSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLArlirnnnpRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIEtlsykelkrwkKYRIsrfynkknnlyNINMFYLEIESLLKKANEHDTKILNALLMYGKSITQKI

*FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		368	2.2.26 [Sep-21-2011]
P04995		475	Exodeoxyribonuclease I OS	N/A	N/A	0.959	0.743	0.313	3e-54
P45188		473	Exodeoxyribonuclease I OS	yes	N/A	0.853	0.663	0.355	9e-54
P57620		413	Exodeoxyribonuclease I OS	yes	N/A	0.790	0.704	0.387	3e-43
Q8K923		482	Exodeoxyribonuclease I OS	yes	N/A	0.891	0.680	0.355	2e-40
Q89A43		481	Exodeoxyribonuclease I OS	yes	N/A	0.812	0.621	0.348	1e-36

>sp\|P04995\|EX1_ECOLI Exodeoxyribonuclease I OS=Escherichia coli (strain K12) GN=sbcB PE=1 SV=2	Back alignment and function desciption

 Score =  213 bits (541), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 201/373 (53%), Gaps = 20/373 (5%)

Query: 1   MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
           +F+RN  +PY   W+++ SRWDL++V++A Y L P GI WP  ++G PSF+LEHL+  N 
Sbjct: 115 IFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 174

Query: 61  LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
           + H  AHDA++DV AT+ +A+L++   PRLF+++ + R K  ++A I  P  +P  +++ 
Sbjct: 175 IEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 234

Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED- 179
           MF +     S + P+  HP N+N +I  +L  D    L  D + +R+ L   K    ++ 
Sbjct: 235 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA 294

Query: 180 -IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD 238
            +P+ ++H+N+ P V++    L      R   +      N+K    +  N  + +K+   
Sbjct: 295 AVPVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAI 350

Query: 239 YK----INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELI 294
           +        SD   N+D +LYN F S  D   + I+    P+ L  ++  F +K++E+L+
Sbjct: 351 FAEAEPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 407

Query: 295 FLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI- 353
           F YRARNF  TL Y E +RW ++R   F  +      +  +  E++ L+++  +   K+ 
Sbjct: 408 FNYRARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVA 462

Query: 354 -LNALLMYGKSIT 365
            L AL  Y + I 
Sbjct: 463 LLKALWQYAEEIV 475

Also functions as a DNA deoxyribophosphodiesterase that releases deoxyribose-phosphate moieties following the cleavage DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease AP lyase.
Escherichia coli (strain K12) (taxid: 83333)
EC: 3EC: .EC: 1EC: .EC: 1EC: 1EC: .EC: 1

>sp\|P45188\|EX1_HAEIN Exodeoxyribonuclease I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=sbcB PE=3 SV=1	Back alignment and function description

>sp\|P57620\|EX1_BUCAI Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=sbcB PE=3 SV=1	Back alignment and function description

>sp\|Q8K923\|EX1_BUCAP Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=sbcB PE=3 SV=1	Back alignment and function description

>sp\|Q89A43\|EX1_BUCBP Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=sbcB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		368
134093838		477	exonuclease I [Herminiimonas arsenicoxyd	0.980	0.756	0.421	1e-93
340786331		477	exodeoxyribonuclease I [Collimonas fungi	0.980	0.756	0.413	3e-93
91788799		480	exonuclease I [Polaromonas sp. JS666] gi	0.989	0.758	0.405	3e-93
152980617		476	exonuclease I [Janthinobacterium sp. Mar	0.980	0.758	0.418	4e-93
409407386		478	exodeoxyribonuclease I [Herbaspirillum s	0.980	0.755	0.406	5e-92
121604837		482	exonuclease I [Polaromonas naphthalenivo	0.986	0.753	0.406	1e-90
239815634		479	exonuclease I [Variovorax paradoxus S110	0.986	0.757	0.409	1e-89
319793918		479	exodeoxyribonuclease i [Variovorax parad	0.986	0.757	0.401	1e-89
329907300		477	Exodeoxyribonuclease I [Oxalobacteraceae	0.980	0.756	0.407	1e-89
241763393		481	Exodeoxyribonuclease I [Acidovorax delaf	0.986	0.754	0.410	3e-89

>gi\|134093838\|ref\|YP_001098913.1\| exonuclease I [Herminiimonas arsenicoxydans] gi\|133737741\|emb\|CAL60786.1\| Exodeoxyribonuclease I (Exonuclease I) (DNA deoxyribophosphodiesterase) (dRPase) [Herminiimonas arsenicoxydans]	Back alignment and taxonomy information

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 155/368 (42%), Positives = 230/368 (62%), Gaps = 7/368 (1%)

Query: 1   MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
           MFWRNLI+PY REW+N C RWD+++V++  Y L P GI WP   +G+ SF+LE L+  N 
Sbjct: 110 MFWRNLIDPYAREWQNACGRWDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANG 169

Query: 61  LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
           ++H+ AHDALSDVRAT+ LARLIR+  PRLF+F  +L KK  V  EIG P+ RPF +IT 
Sbjct: 170 IAHEAAHDALSDVRATIALARLIRDRQPRLFDFCFALHKKDRVATEIGLPLRRPFLHITG 229

Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI 180
           MF ++   I ++WP+ +HP NKN +I W+L  DP +    D   IR  +  K ++  E +
Sbjct: 230 MFPAERGCIGIVWPLAVHPTNKNEVIVWDLAADPSELATLDAETIRTRMFSKADALPEGV 289

Query: 181 ---PISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFL 237
              PI  IHLN+SP+VI+NLK LS+ +  ++  D+  A ++ + A++  + T IW+ +F 
Sbjct: 290 SRLPIKSIHLNKSPVVINNLKTLSAEMTAQWGLDVATALRHAEIAATTPDMTAIWQDVFH 349

Query: 238 DYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLY 297
             +    D    +DE+LY  F+   D   L  LR++SP+ L+     F + +LEEL + Y
Sbjct: 350 RPQEGTPD----VDEDLYGGFVGNNDRRLLQELRALSPEALAKATPGFSDARLEELFWRY 405

Query: 298 RARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNAL 357
           RARNF +TLS +E +RW+++R +R +N       I   + EI+ L + A+E   +IL AL
Sbjct: 406 RARNFPQTLSAEEAERWEEHRAARLFNGDGGARTIEGMFAEIDQLSETADERGEEILAAL 465

Query: 358 LMYGKSIT 365
             Y ++I 
Sbjct: 466 YDYAEAIA 473

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|340786331\|ref\|YP_004751796.1\| exodeoxyribonuclease I [Collimonas fungivorans Ter331] gi\|340551598\|gb\|AEK60973.1\| Exodeoxyribonuclease I [Collimonas fungivorans Ter331]	Back alignment and taxonomy information

>gi\|91788799\|ref\|YP_549751.1\| exonuclease I [Polaromonas sp. JS666] gi\|91698024\|gb\|ABE44853.1\| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666]	Back alignment and taxonomy information

>gi\|152980617\|ref\|YP_001352252.1\| exonuclease I [Janthinobacterium sp. Marseille] gi\|151280694\|gb\|ABR89104.1\| exodeoxyribonuclease I [Janthinobacterium sp. Marseille]	Back alignment and taxonomy information

>gi\|409407386\|ref\|ZP_11255837.1\| exodeoxyribonuclease I [Herbaspirillum sp. GW103] gi\|386433137\|gb\|EIJ45963.1\| exodeoxyribonuclease I [Herbaspirillum sp. GW103]	Back alignment and taxonomy information

>gi\|121604837\|ref\|YP_982166.1\| exonuclease I [Polaromonas naphthalenivorans CJ2] gi\|120593806\|gb\|ABM37245.1\| Exodeoxyribonuclease I subunit C [Polaromonas naphthalenivorans CJ2]	Back alignment and taxonomy information

>gi\|239815634\|ref\|YP_002944544.1\| exonuclease I [Variovorax paradoxus S110] gi\|239802211\|gb\|ACS19278.1\| Exodeoxyribonuclease I [Variovorax paradoxus S110]	Back alignment and taxonomy information

>gi\|319793918\|ref\|YP_004155558.1\| exodeoxyribonuclease i [Variovorax paradoxus EPS] gi\|315596381\|gb\|ADU37447.1\| Exodeoxyribonuclease I [Variovorax paradoxus EPS]	Back alignment and taxonomy information

>gi\|329907300\|ref\|ZP_08274615.1\| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480] gi\|327547025\|gb\|EGF31914.1\| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]	Back alignment and taxonomy information

>gi\|241763393\|ref\|ZP_04761448.1\| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN] gi\|241367435\|gb\|EER61746.1\| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		368
TIGR_CMR\|SO_2790		470	SO_2790 "exodeoxyribonuclease	0.932	0.729	0.341	3.8e-53
UNIPROTKB\|Q483M2		487	sbcB "Exodeoxyribonuclease I"	0.937	0.708	0.329	8.3e-51
TIGR_CMR\|CPS_2014		487	CPS_2014 "exodeoxyribonuclease	0.937	0.708	0.329	8.3e-51
5' specific; deoxyribophosphodiesterase" [Escherichia coli K-12 (taxid:83333)]" target="_blank" href="http://amigo.geneontology.org/cgi-bin/amigo/gp-assoc.cgi?gp=UniProtKB:P04995&session_id=7796amigo1376594893">UNIPROTKB\|P04995		475	sbcB "exonuclease I, 3' --> 5'	0.956	0.741	0.319	2.2e-50
UNIPROTKB\|Q9KSM2		474	VC_1234 "Exodeoxyribonuclease	0.942	0.732	0.304	4.4e-45
TIGR_CMR\|VC_1234		474	VC_1234 "exodeoxyribonuclease	0.942	0.732	0.304	4.4e-45
TIGR_CMR\|CBU_1363		458	CBU_1363 "exodeoxyribonuclease	0.255	0.205	0.346	3.2e-09
DICTYBASE\|DDB_G0284147		315	DDB_G0284147 [Dictyostelium di	0.706	0.825	0.248	7.9e-05

TIGR_CMR\|SO_2790 SO_2790 "exodeoxyribonuclease I" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 126/369 (34%), Positives = 204/369 (55%)

Query:     2 FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNL 61
             F+RN I+PY REW+N  +RWD+I++++A Y   P GI WP K +G PSFKLEHL+  N L
Sbjct:   114 FYRNFIDPYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGL 173

Query:    62 SHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHM 121
             SH+KAHDA+SDV AT+ +A+LI+   P+L+ +   LR+K+ V A+I     +P  +++  
Sbjct:   174 SHEKAHDAMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSK 233

Query:   122 FSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-- 179
              S+ H   +L+ P+  HP NKN +I  NL  D       D+ +I+  +   +    +D  
Sbjct:   234 ISAMHGCTTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELADDEL 293

Query:   180 -IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKI 235
              IP+  +HLN+ P + S  K+L      R   D   A   +K +K    +        ++
Sbjct:   294 PIPVKQVHLNKCPFITS-AKILDDAQAERLSIDKAFARGQYKRLKAHPELREKL---AQL 349

Query:   236 FL-DYKINNSDLELNIDEELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEEL 293
             F  D +   +D +L     LY+  F S  D  K+ I+R   P+ L+ ++  F++ ++ E+
Sbjct:   350 FEHDGEATTTDPDLM----LYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEM 405

Query:   294 IFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDT 351
             +F YRARN+ E L  +E  RW+ +   R  ++         + L++E+LL+  + +EH  
Sbjct:   406 LFRYRARNYPELLDDQESHRWRTFCQQRLADQD--------YLLKLENLLQDTEGDEHKQ 457

Query:   352 KILNALLMY 360
             K+L AL  Y
Sbjct:   458 KLLAALCHY 466

GO:0006281 "DNA repair" evidence=ISS

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS

UNIPROTKB\|Q483M2 sbcB "Exodeoxyribonuclease I" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_2014 CPS_2014 "exodeoxyribonuclease I" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

UNIPROTKB\|P04995 sbcB "exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KSM2 VC_1234 "Exodeoxyribonuclease I" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_1234 VC_1234 "exodeoxyribonuclease I" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1363 CBU_1363 "exodeoxyribonuclease I, putative" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0284147 DDB_G0284147 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K923	EX1_BUCAP	3, ., 1, ., 1, 1, ., 1	0.3553	0.8913	0.6804	yes	N/A
P45188	EX1_HAEIN	3, ., 1, ., 1, 1, ., 1	0.3551	0.8532	0.6638	yes	N/A
Q89A43	EX1_BUCBP	3, ., 1, ., 1, 1, ., 1	0.3487	0.8125	0.6216	yes	N/A
P57620	EX1_BUCAI	3, ., 1, ., 1, 1, ., 1	0.3876	0.7907	0.7046	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.11	LOW CONFIDENCE prediction!
3rd Layer	3.1.11.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		368
PRK11779		476	PRK11779, sbcB, exonuclease I; Provisional	1e-124
COG2925		475	COG2925, SbcB, Exonuclease I [DNA replication, rec	1e-95
pfam08411		268	pfam08411, Exonuc_X-T_C, Exonuclease C-terminal	1e-57
cd06138		183	cd06138, ExoI_N, N-terminal DEDDh 3'-5' exonucleas	4e-36

>gnl\|CDD\|236979 PRK11779, sbcB, exonuclease I; Provisional	Back alignment and domain information

 Score =  365 bits (940), Expect = e-124
 Identities = 126/374 (33%), Positives = 203/374 (54%), Gaps = 15/374 (4%)

Query: 1   MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
           +F+RN  +PY REW+N  SRWDL++V++A Y L P GI WP   +G PSFKLEHL+  N 
Sbjct: 112 IFYRNFYDPYAREWQNGNSRWDLLDVVRACYALRPEGINWPENEDGLPSFKLEHLTKANG 171

Query: 61  LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
           + H+ AHDA+SDV AT+ +A+LI+   P+LF+++  LR K+ V A I  P  +P  +++ 
Sbjct: 172 IEHENAHDAMSDVYATIAMAKLIKQKQPKLFDYLFQLRNKRKVAALIDVPAMKPLVHVSG 231

Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED- 179
           MF ++    S + P+  HP NKN +I  +L  DP   L  D + +R+ L  ++    E  
Sbjct: 232 MFGAERGCTSWVAPLAWHPTNKNAVIVCDLAGDPSPLLELDADTLRERLYTRRADLAEGE 291

Query: 180 --IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF- 236
             +P+ ++HLN+ P++    K L      R   D      N+       +       +F 
Sbjct: 292 LPVPLKLVHLNKCPVLA-PAKTLRPEDAERLGIDRQQCLDNLALLRQNPDLREKVVAVFA 350

Query: 237 LDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFL 296
                  SD   ++D +LY+ F S  D   + I+R   P+ L+ ++  F++ +LEEL+F 
Sbjct: 351 EAEPFAPSD---DVDAQLYDGFFSDADRRLMEIIRETEPENLAALDLTFDDPRLEELLFR 407

Query: 297 YRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--IL 354
           YRARNF ETL  +E +RW ++R  R   +      +  +  E+E L ++  + + K  +L
Sbjct: 408 YRARNFPETLDDEEQQRWLEHRRQRLTPE-----RLQQYAAELEQLAQEYEDDEEKQALL 462

Query: 355 NALLMYGKSITQKI 368
            AL  Y + +   +
Sbjct: 463 KALYDYAEELVPTL 476

Length = 476

>gnl\|CDD\|225477 COG2925, SbcB, Exonuclease I [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|219829 pfam08411, Exonuc_X-T_C, Exonuclease C-terminal	Back alignment and domain information

>gnl\|CDD\|99841 cd06138, ExoI_N, N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		368
COG2925		475	SbcB Exonuclease I [DNA replication, recombination	100.0
PRK11779		476	sbcB exonuclease I; Provisional	100.0
PF08411		269	Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IP	100.0
cd06138		183	ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o	99.35
PRK06310		250	DNA polymerase III subunit epsilon; Validated	97.65
TIGR00573		217	dnaq exonuclease, DNA polymerase III, epsilon subu	97.5
smart00479		169	EXOIII exonuclease domain in DNA-polymerase alpha	97.23
PRK07942		232	DNA polymerase III subunit epsilon; Provisional	97.2
PRK09145		202	DNA polymerase III subunit epsilon; Validated	97.2
PRK07740		244	hypothetical protein; Provisional	97.13
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	96.75
PRK09182		294	DNA polymerase III subunit epsilon; Validated	96.74
PRK06309		232	DNA polymerase III subunit epsilon; Validated	96.69
PRK07883		557	hypothetical protein; Validated	96.44
cd06127		159	DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh	96.39
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	96.38
PRK09146		239	DNA polymerase III subunit epsilon; Validated	96.33
PRK06063		313	DNA polymerase III subunit epsilon; Provisional	96.22
cd06133		176	ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o	96.21
PRK07247		195	DNA polymerase III subunit epsilon; Validated	95.67
PRK08517		257	DNA polymerase III subunit epsilon; Provisional	95.62
cd06130		156	DNA_pol_III_epsilon_like an uncharacterized bacter	94.67
cd06136		177	TREX1_2 DEDDh 3'-5' exonuclease domain of three pr	94.6
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	94.43
PRK06807		313	DNA polymerase III subunit epsilon; Validated	94.41
TIGR01405		1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	93.97
cd06134		189	RNaseT DEDDh 3'-5' exonuclease domain of RNase T.	93.66
cd06137		161	DEDDh_RNase DEDDh 3'-5' exonuclease domain of the	93.35
PF00929		164	RNase_T: Exonuclease; InterPro: IPR013520 This ent	93.22
PRK07748		207	sporulation inhibitor KapD; Provisional	93.14
PRK06195		309	DNA polymerase III subunit epsilon; Validated	93.06
cd06149		157	ISG20 DEDDh 3'-5' exonuclease domain of Interferon	93.05
cd06131		167	DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl	92.22
cd06144		152	REX4_like DEDDh 3'-5' exonuclease domain of RNA ex	92.03
cd06135		173	Orn DEDDh 3'-5' exonuclease domain of oligoribonuc	91.9
PRK07983		219	exodeoxyribonuclease X; Provisional	91.7
PRK05168		211	ribonuclease T; Provisional	91.7
PRK00448		1437	polC DNA polymerase III PolC; Validated	91.32
PRK05711		240	DNA polymerase III subunit epsilon; Provisional	90.98
cd06145		150	REX1_like DEDDh 3'-5' exonuclease domain of RNA ex	90.95
TIGR01298		200	RNaseT ribonuclease T. in gamma-subdivision Proteo	90.81
TIGR01406		225	dnaQ_proteo DNA polymerase III, epsilon subunit, P	89.78
PRK06722		281	exonuclease; Provisional	89.76
PRK05359		181	oligoribonuclease; Provisional	89.25
COG0847		243	DnaQ DNA polymerase III, epsilon subunit and relat	81.95

>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair]	Back alignment and domain information

Probab=100.00  E-value=2.3e-135  Score=994.76  Aligned_cols=355  Identities=35%  Similarity=0.663  Sum_probs=346.1

Q ss_pred             CccccCcccccccccCCCcccHHHHHHHHHHhhcCCCcccCCCCCCCcceecccchhhhCcccccchhhhhhHHHHHHHH
Q psy14488          1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLA   80 (368)
Q Consensus         1 ~fYRNf~dPY~~ew~nGnSRwDli~vvra~yalrPegi~WP~~~dG~pSFKLe~Lt~ANgi~h~~AHDAlsDV~ATI~lA   80 (368)
                      +|||||+|||+||||||||||||+||||+|||||||||+||+++||.||||||+||+||||+|++||||||||||||+||
T Consensus       115 ~fyRNF~DPYa~sWqngNSRWDLLD~~RacyALRPeGI~Wp~n~dG~pSFkLEhLt~ANgieH~nAHdAmsDVyATIamA  194 (475)
T COG2925         115 IFYRNFYDPYAWSWQNGNSRWDLLDVVRACYALRPEGINWPENDDGLPSFKLEHLTKANGIEHSNAHDAMSDVYATIAMA  194 (475)
T ss_pred             HHHHhcCchhhhhhcCCCchhHHHHHHHHHHhcCcccCCCCcCCCCCcchhhHHHhhccccccchhhHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCcchHHHHHhccCHHHHHhhhCCCCCCceEEEecccCCCCCCceEEEeecccCCCCCeEEEEeCCCCchHhhcC
Q psy14488         81 RLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLN  160 (368)
Q Consensus        81 kLIk~kqPkL~~~~~~~r~K~~v~~~l~~~~~~P~lhvs~~f~a~~~~~~~v~pl~~hp~n~N~vi~~DL~~Dp~~L~~l  160 (368)
                      ||||++||+||||+|.+|+|+.|.++||+.+++|+||||||||+.+||+++|+||+|||+|+|+||||||..||++|++|
T Consensus       195 klvk~~QPrLfdy~f~~R~K~~~~~lid~~~~~PlvHVSgm~ga~r~~~s~V~PLaWHP~N~NalIv~DL~~Di~~Ll~l  274 (475)
T COG2925         195 KLVKTAQPRLFDYLFQLRKKHKLLALIDIPNMQPLVHVSGMFGAERGNTSWVLPLAWHPTNRNAVIVCDLAGDISPLLEL  274 (475)
T ss_pred             HHHHhhCcHHHHHHHHhccHHHHHHHhcccccCceEEeecccchhhCCceEEEeecccCCCCceEEEEEccCChHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhccccccCCCC---CCceEEeecCCcccccccccCChhhhhhhcCCHHHHHHHHHhHHHHhhChhHHHHHHH
Q psy14488        161 DINKIRDYLCFKKNSFKED---IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFL  237 (368)
Q Consensus       161 ~~~~i~~~l~t~~~~l~e~---~plk~i~iNk~P~v~~p~~~l~~~~a~rl~id~~~~~~~~~~~~~l~~~~~l~~kl~~  237 (368)
                      ++++|++||||++.+|+||   +|||.||||||||| +|+++|+++++.|||||.+.|++|++.   |+.+|++++|+..
T Consensus       275 ~a~~lr~rLyT~~~dL~eg~~~vP~KlvHiNkcPil-ap~ktL~~eda~RlGidr~~c~~~~~~---l~~~p~~rekv~~  350 (475)
T COG2925         275 DADTLRERLYTRKADLGEGELAVPVKLVHINKCPIL-APAKTLRPEDADRLGIDRQHCLDNLEL---LRENPDVREKVVA  350 (475)
T ss_pred             CHHHHHHHhccccccccCCcccCceEEEEecCCCee-cchhhcChhhhhhcCCcHHHHHHHHHH---HhhCchHHHHHHH
Confidence            9999999999999999999   99999999999999 999999999999999999999999999   9999999999999


Q ss_pred             HhhhcC-CCCCCCccHHhhccCCChHHHHHHHHHHcCChhhhhccCCCCCCccHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy14488        238 DYKINN-SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKK  316 (368)
Q Consensus       238 ~~~~~~-~~~~~d~d~~LY~GF~s~~Dk~~m~~i~~~~p~~l~~~~~~F~D~Rl~eLlfRyraRN~P~~L~~~E~~~W~~  316 (368)
                      +|++.. |.+..|||++||+||||++||+.|+++|.++|++|+++...|.|+||.+|+|||||||||+|||.+||++|.+
T Consensus       351 if~~e~~f~~~~dvd~~LY~GFf~~~Dr~~~~ilR~~~pe~La~~~~~f~D~Rl~~LlFrYRARnfp~tLt~~Eq~rW~~  430 (475)
T COG2925         351 IFAEEEPFNPSDDVDAQLYNGFFSDADRAAMKILRETEPENLAALDITFVDKRLEELLFRYRARNFPETLTDAEQQRWLE  430 (475)
T ss_pred             HHhccccCCCccchhHHHHccccCHHHHHHHHHHHhCChhhhhhccCCccchhHHHHHHHHHhhcCccccCHHHHHHHHH
Confidence            999765 8888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccCCCccccHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHHHhh
Q psy14488        317 YRISRFYNKKNNLYNINMFYLEIESLLKKANEH--DTKILNALLMYGKSIT  365 (368)
Q Consensus       317 ~~~~rl~~~~~~~~~~~~~~~~l~~L~~~~~~~--~~~iL~~L~~y~~~l~  365 (368)
                      ||++||+.      ..+.|...|+.+..+++.+  |+.+|++|++|+++|.
T Consensus       431 ~rr~~l~~------~~~~~~~tl~~~~~~~~~d~~k~~lL~~l~~y~~~l~  475 (475)
T COG2925         431 HRRQRLTP------ELQGYELTLQALVQEHSDDKEKLALLKALYEYAAELV  475 (475)
T ss_pred             HHHHhcCh------hhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhC
Confidence            99999974      2577888888889888887  9999999999998863

>PRK11779 sbcB exonuclease I; Provisional	Back alignment and domain information

>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways	Back alignment and domain information

>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins	Back alignment and domain information

>PRK06310 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family	Back alignment and domain information

>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases	Back alignment and domain information

>PRK07942 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>PRK09145 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK07740 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>PRK09182 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK06309 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK07883 hypothetical protein; Validated	Back alignment and domain information

>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK09146 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK06063 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins	Back alignment and domain information

>PRK07247 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK08517 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	Back alignment and domain information

>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK06807 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type	Back alignment and domain information

>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T	Back alignment and domain information

>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins	Back alignment and domain information

>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III	Back alignment and domain information

>PRK07748 sporulation inhibitor KapD; Provisional	Back alignment and domain information

>PRK06195 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins	Back alignment and domain information

>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins	Back alignment and domain information

>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins	Back alignment and domain information

>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins	Back alignment and domain information

>PRK07983 exodeoxyribonuclease X; Provisional	Back alignment and domain information

>PRK05168 ribonuclease T; Provisional	Back alignment and domain information

>PRK00448 polC DNA polymerase III PolC; Validated	Back alignment and domain information

>PRK05711 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins	Back alignment and domain information

>TIGR01298 RNaseT ribonuclease T	Back alignment and domain information

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial	Back alignment and domain information

>PRK06722 exonuclease; Provisional	Back alignment and domain information

>PRK05359 oligoribonuclease; Provisional	Back alignment and domain information

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		368
1fxx_A		482	The Structure Of Exonuclease I Suggests How Process		2e-55

>pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity Is Achieved Length = 482

Back alignment and structure

Iteration: 1

Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 119/374 (31%), Positives = 203/374 (54%), Gaps = 20/374 (5%) Query: 1 MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60 +F+RN +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N Sbjct: 115 IFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 174 Query: 61 LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120 + H AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ Sbjct: 175 IEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 234 Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED- 179 MF + S + P+ HP N+N +I +L D L D + +R+ L K ++ Sbjct: 235 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA 294 Query: 180 -IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---I 235 +P+ ++H+N+ P V++ L R + N+K + N + +K I Sbjct: 295 AVPVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAI 350 Query: 236 FLDYK-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELI 294 F + + SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+ Sbjct: 351 FAEAEPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 407 Query: 295 FLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI- 353 F YRARNF TL Y E +RW ++R F + + + E++ L+++ + K+ Sbjct: 408 FNYRARNFPGTLDYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLVQQYADDKEKVA 462 Query: 354 -LNALLMYGKSITQ 366 L AL Y I + Sbjct: 463 LLKALWQYADEIVE 476 Database: pdbaa

PyMOL of 1fxx

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		368
2qxf_A		482	Exodeoxyribonuclease I; alpha-beta domain, DNAQ su	4e-49
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Length = 482	Back alignment and structure

 Score =  171 bits (433), Expect = 4e-49
 Identities = 110/371 (29%), Positives = 193/371 (52%), Gaps = 12/371 (3%)

Query: 1   MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
           +F+RN  +PY   W+++ SRWDL++V++A Y L P GI WP  ++G PSF+LEHL+  N 
Sbjct: 115 IFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 174

Query: 61  LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
           + H  AHDA++DV AT+ +A+L++   PRLF+++ + R K  ++A I  P  +P  +++ 
Sbjct: 175 IEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 234

Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK--E 178
           MF +     S + P+  HP N+N +I  +L  D    L  D + +R+ L   K       
Sbjct: 235 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA 294

Query: 179 DIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD 238
            +P+ ++H+N+ P++     +   +     +  +N             N     K + + 
Sbjct: 295 AVPVKLVHINKCPVLAQANTLRPED---ADRLGINRQHCLDNLKILRENPQVREKVVAIF 351

Query: 239 YKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 298
            +        N+D +LYN F S  D   + I+    P+ L  ++  F +K++E+L+F YR
Sbjct: 352 AEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 411

Query: 299 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNA 356
           ARNF  TL Y E +RW ++R   F  +      +  +  E++ L+++   ++    +L A
Sbjct: 412 ARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKA 466

Query: 357 LLMYGKSITQK 367
           L  Y   I + 
Sbjct: 467 LWQYADEIVEH 477

PyMOL of 2qxf

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		368
2qxf_A		482	Exodeoxyribonuclease I; alpha-beta domain, DNAQ su	100.0
3u3y_B		314	Three prime repair exonuclease 1; RNAse H fold, 3'	97.35
3mxm_B		242	Three prime repair exonuclease 1; RNAse H-like fol	97.14
1w0h_A		204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	96.92
1y97_A		238	Three prime repair exonuclease 2; TREX2, hydrolase	96.83
2gui_A		194	DNA polymerase III epsilon subunit; DNA polymerase	96.81
2p1j_A		186	POLIII, DNA polymerase III POLC-type; structural g	96.57
2xri_A		224	ERI1 exoribonuclease 3; hydrolase, metal binding;	96.34
2f96_A		224	Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas	96.34
2gbz_A		194	Oligoribonuclease; ORN, deddh, structural genomics	95.46
1wlj_A		189	Interferon stimulated gene 20KDA; exoribonuclease,	95.27
3v9w_A		235	Ribonuclease T; DEDD nucleases family, EXO-nucleas	95.02
1zbu_A		349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	95.02
2igi_A		180	Oligoribonuclease; RNAse, exoribonuclease, exonucl	94.9
1zbh_A		299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	94.45
3cg7_A		308	CRN-4, cell death-related nuclease 4; hydrolase, a	93.71
3tr8_A		186	Oligoribonuclease; transcription, hydrolase; 2.50A	89.49

>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*	Back alignment and structure

Probab=100.00  E-value=1.2e-94  Score=741.63  Aligned_cols=355  Identities=32%  Similarity=0.616  Sum_probs=313.9

Q ss_pred             ccccCcccccccccCCCcccHHHHHHHHHHhhcCCCcccCCCCCCCcceecccchhhhCcccccchhhhhhHHHHHHHHH
Q psy14488          2 FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLAR   81 (368)
Q Consensus         2 fYRNf~dPY~~ew~nGnSRwDli~vvra~yalrPegi~WP~~~dG~pSFKLe~Lt~ANgi~h~~AHDAlsDV~ATI~lAk   81 (368)
                      |+|++++||.++|+|||++||.++++|.+|.++|+|+.||.+++|.+|+||+.|+.++||.+++||+||+||+||++|++
T Consensus       116 ~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~~~aHrAL~DA~aTa~l~~  195 (482)
T 2qxf_A          116 FYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAK  195 (482)
T ss_dssp             HHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCCC---CTTHHHHHHHHHHH
T ss_pred             HHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcchHHHHHhccCHHHHHhhhCCCCCCceEEEecccCCCCCCceEEEeecccCCCCCeEEEEeCCCCchHhhcCC
Q psy14488         82 LIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLND  161 (368)
Q Consensus        82 LIk~kqPkL~~~~~~~r~K~~v~~~l~~~~~~P~lhvs~~f~a~~~~~~~v~pl~~hp~n~N~vi~~DL~~Dp~~L~~l~  161 (368)
                      .+++++|++|+|++++|+|..+..++++..++|++|||++||+.+||+++|+|||+||+|+|+||||||+.||++|+++|
T Consensus       196 ~l~~~~p~l~~~~l~~~~k~~~~~l~~~~~~~P~~~~s~~fg~~~g~~~~v~pl~~~~~n~n~~~~~dl~~d~~~l~~~~  275 (482)
T 2qxf_A          196 LVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELD  275 (482)
T ss_dssp             HHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEEEEEECSSCTTEEEEEETTSCCHHHHHCC
T ss_pred             HHHHhChhhhHHHHHhhhHHHHHHHHhhccCCcceEeecccccccCeeeEEeeeeeCCCCcccEEEEECCCChHHHhcCC
Confidence            99999999999999999999999999987899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccccCCCC--CCceEEeecCCcccccccccCChhhhhhhcCCHHHHHHHHHhHHHHhhChhHHHHHHHHh
Q psy14488        162 INKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY  239 (368)
Q Consensus       162 ~~~i~~~l~t~~~~l~e~--~plk~i~iNk~P~v~~p~~~l~~~~a~rl~id~~~~~~~~~~~~~l~~~~~l~~kl~~~~  239 (368)
                      +++|++||||++++||+.  +|||+||||||||| +|+++|++++++|||||.++|++|+++   |+++|++++|++++|
T Consensus       276 ~~~l~~~l~~~~~~l~~~~~~p~k~v~~nk~P~~-~~~~~l~~~~~~r~~id~~~~~~~~~~---~~~~~~~~~~~~~~~  351 (482)
T 2qxf_A          276 SDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVL-AQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIF  351 (482)
T ss_dssp             -------------------CCCEEEEETTSCCEE-EEGGGSCHHHHHHHTCCHHHHHHHHHH---HHHCTTHHHHC----
T ss_pred             HHHHHHHhccchhhhccccCCCeEEEEecCCCee-cccccCCHHHHHHhCCCHHHHHHHHHH---HHhCHHHHHHHHHHH
Confidence            999999999999999876  89999999999998 999999999999999999999999999   999999999999999


Q ss_pred             hhc-CCCCCCCccHHhhccCCChHHHHHHHHHHcCChhhhhccCCCCCCccHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q psy14488        240 KIN-NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYR  318 (368)
Q Consensus       240 ~~~-~~~~~~d~d~~LY~GF~s~~Dk~~m~~i~~~~p~~l~~~~~~F~D~Rl~eLlfRyraRN~P~~L~~~E~~~W~~~~  318 (368)
                      ++. .++++.|||++||+||||++||++|++||.++|++|+++...|+|+||++|+|||||||||+|||++|+++|++||
T Consensus       352 ~~~~~~~~~~d~d~~lY~gF~~~~D~~~~~~~~~~~~~~~~~~~~~f~d~rl~~l~~r~~arn~p~~l~~~e~~~w~~~~  431 (482)
T 2qxf_A          352 AEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHR  431 (482)
T ss_dssp             ---------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHHHHHHHHHHHHCGGGCCHHHHHHHHHHH
T ss_pred             hccccCCCCCChHHHHhCCCCCHHHHHHHHHHHcCCHHHHHhCcCCCcCccHHHHHHHHHHhcCcccCCHHHHHHHHHHH
Confidence            863 3677799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcccCCCccccHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHHHhh
Q psy14488        319 ISRFYNKKNNLYNINMFYLEIESLLKKANEH--DTKILNALLMYGKSIT  365 (368)
Q Consensus       319 ~~rl~~~~~~~~~~~~~~~~l~~L~~~~~~~--~~~iL~~L~~y~~~l~  365 (368)
                      ++||+.     .|+++|+++|++|+++++.+  |++||++|++|+++|.
T Consensus       432 ~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~y~~~~~  475 (482)
T 2qxf_A          432 RQVFTP-----EFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIV  475 (482)
T ss_dssp             HHHSCH-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhhh-----hhHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence            999985     28999999999999998766  8899999999999885

PyMOL of 2qxf

>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*	Back alignment and structure

>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A	Back alignment and structure

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5	Back alignment and structure

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5	Back alignment and structure

>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*	Back alignment and structure

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}	Back alignment and structure

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}	Back alignment and structure

>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5	Back alignment and structure

>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}	Back alignment and structure

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5	Back alignment and structure

>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A	Back alignment and structure

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}	Back alignment and structure

>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A	Back alignment and structure

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}	Back alignment and structure

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A	Back alignment and structure

>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		368
d2qxfa1		467	c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli	1e-35
d1y97a1		228	c.55.3.5 (A:1-228) Three prime repair exonuclease	2e-05

>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Length = 467	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease I
species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]

 Score =  133 bits (334), Expect = 1e-35
 Identities = 110/368 (29%), Positives = 191/368 (51%), Gaps = 12/368 (3%)

Query: 1   MFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN 60
           +F+RN  +PY   W+++ SRWDL++V++A Y L P GI WP  ++G PSF+LEHL+  N 
Sbjct: 108 IFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 167

Query: 61  LSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITH 120
           + H  AHDA++DV AT+ +A+L++   PRLF+++ + R K  ++A I  P  +P  +++ 
Sbjct: 168 IEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 227

Query: 121 MFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLC--FKKNSFKE 178
           MF +     S + P+  HP N+N +I  +L  D    L  D + +R+ L           
Sbjct: 228 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA 287

Query: 179 DIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD 238
            +P+ ++H+N+ P++     +   +     +  +N             N     K + + 
Sbjct: 288 AVPVKLVHINKCPVLAQANTLRPED---ADRLGINRQHCLDNLKILRENPQVREKVVAIF 344

Query: 239 YKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 298
            +        N+D +LYN F S  D   + I+    P+ L  ++  F +K++E+L+F YR
Sbjct: 345 AEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 404

Query: 299 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNA 356
           ARNF  TL Y E +RW ++R   F  +      +  +  E++ L+++  +   K  +L A
Sbjct: 405 ARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKA 459

Query: 357 LLMYGKSI 364
           L  Y   I
Sbjct: 460 LWQYADEI 467

PyMOL of d2qxfa1

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Length = 228	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		368
d2qxfa1		467	Exonuclease I {Escherichia coli K12 (Escherichia c	100.0
d3b6oa1		226	Three prime repair exonuclease 1, TREX1 {Mouse (Mu	98.51
d1y97a1		228	Three prime repair exonuclease 2, TREX2 {Human (Ho	98.32
d2igia1		180	Oligoribonuclease {Escherichia coli [TaxId: 562]}	97.86
d1w0ha_		200	Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960	97.52
d1wlja_		173	Interferon-stimulated gene 20 kDa protein, ISG20 {	96.37
d2f96a1		202	Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287	96.28
d2guia1		174	N-terminal exonuclease domain of the epsilon subun	95.81

>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease I
species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]

Probab=100.00  E-value=4.2e-75  Score=583.96  Aligned_cols=354  Identities=32%  Similarity=0.620  Sum_probs=313.2

Q ss_pred             ccccCcccccccccCCCcccHHHHHHHHHHhhcCCCcccCCCCCCCcceecccchhhhCcccccchhhhhhHHHHHHHHH
Q psy14488          2 FWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLAR   81 (368)
Q Consensus         2 fYRNf~dPY~~ew~nGnSRwDli~vvra~yalrPegi~WP~~~dG~pSFKLe~Lt~ANgi~h~~AHDAlsDV~ATI~lAk   81 (368)
                      ||||+++||.+.|.+||+|||++.++|+++++.|+.+.||..+.|++||||+.|+.+|||.|++||||++||.||++|+|
T Consensus       109 ~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~kL~~la~~~gi~~~~aH~Al~D~~~t~~l~~  188 (467)
T d2qxfa1         109 FYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAK  188 (467)
T ss_dssp             HHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCCC---CTTHHHHHHHHHHH
T ss_pred             HHHhcccchhhcccccccchhhhhhhhhccccCCchhhhhhccccchhhhHHHHHHHhCCCccccccccCCHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcchHHHHHhccCHHHHHhhhCCCCCCceEEEecccCCCCCCceEEEeecccCCCCCeEEEEeCCCCchHhhcCC
Q psy14488         82 LIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLND  161 (368)
Q Consensus        82 LIk~kqPkL~~~~~~~r~K~~v~~~l~~~~~~P~lhvs~~f~a~~~~~~~v~pl~~hp~n~N~vi~~DL~~Dp~~L~~l~  161 (368)
                      +|++++|.+|+++++.++|..|.+.|......|+++|+++||...+++.++++++.||.|+|.++||||+.||+++++++
T Consensus       189 ~i~~~~~~~~~~~l~~~~K~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~n~~i~~dL~~dp~~~l~l~  268 (467)
T d2qxfa1         189 LVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELD  268 (467)
T ss_dssp             HHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEEEEEECSSCTTEEEEEETTSCCHHHHHCC
T ss_pred             HhhhhhHHHHHHHHHhccHHHHHHHhhhcccceeeEeeccccccccccccccccccCCccccceeeeehhhchhhhhhhh
Confidence            99999999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccccCCCC--CCceEEeecCCcccccccccCChhhhhhhcCCHHHHHHHHHhHHHHhhChhHHHHHHHHh
Q psy14488        162 INKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY  239 (368)
Q Consensus       162 ~~~i~~~l~t~~~~l~e~--~plk~i~iNk~P~v~~p~~~l~~~~a~rl~id~~~~~~~~~~~~~l~~~~~l~~kl~~~~  239 (368)
                      .++|++.++++..++..+  .|+|.|++||||++ +|.+.++.+...+++++.+.|++|++.   |++|+.+.+++.+++
T Consensus       269 ~~el~~~l~~~~~~~~~~~~~~ir~i~~nk~p~i-~~~~~~~~~~~~~l~~~~~~~~~r~~~---i~~n~~~~~~~~~~~  344 (467)
T d2qxfa1         269 SDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVL-AQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIF  344 (467)
T ss_dssp             -------------------CCCEEEEETTSCCEE-EEGGGSCHHHHHHHTCCHHHHHHHHHH---HHHCTTHHHHC----
T ss_pred             HHHHHHHHhcccccccccCCcceEEeeccCCccc-CchhhccchhHhHhhHHHHHHHHHHHH---hhhCHHHHHHhHHHh
Confidence            999999999998777666  88999999999998 999999999999999999999999999   999999999999988


Q ss_pred             hhcC-CCCCCCccHHhhccCCChHHHHHHHHHHcCChhhhhccCCCCCCccHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q psy14488        240 KINN-SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYR  318 (368)
Q Consensus       240 ~~~~-~~~~~d~d~~LY~GF~s~~Dk~~m~~i~~~~p~~l~~~~~~F~D~Rl~eLlfRyraRN~P~~L~~~E~~~W~~~~  318 (368)
                      .... +.++.++|++||+||+|+.||.+|++||.++|+++.++...|+|+|+++|++||++||||++|+++|+++|+++|
T Consensus       345 ~~~~~~~~~~~~e~~iY~gf~s~~Dk~~~~~fh~a~~~~k~~~~~~f~D~Rl~~l~~R~~~~n~Pe~L~~~~~~~~~~~i  424 (467)
T d2qxfa1         345 AEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHR  424 (467)
T ss_dssp             ---------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHHHHHHHHHHHHCGGGCCHHHHHHHHHHH
T ss_pred             hhccccccccccHHHHhccccchHHHHHHHHHHhCCHHHHHHHhcCCCChHHHHHHHHHHHHhChhcCCHHHHHHHHHHH
Confidence            7543 466789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcccCCCccccHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHHHh
Q psy14488        319 ISRFYNKKNNLYNINMFYLEIESLLKKANEH--DTKILNALLMYGKSI  364 (368)
Q Consensus       319 ~~rl~~~~~~~~~~~~~~~~l~~L~~~~~~~--~~~iL~~L~~y~~~l  364 (368)
                      ++||..     .|++.|..+|++|+++.+.+  |+.||++|.+|+++|
T Consensus       425 ~~rl~~-----~ti~~~~~ei~~l~~~~~~~~ek~~iL~~l~~y~~~l  467 (467)
T d2qxfa1         425 RQVFTP-----EFLQGYADELQMLVQQYADDKEKVALLKALWQYADEI  467 (467)
T ss_dssp             HHHSCH-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHhcC-----CcHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC
Confidence            999974     48999999999999887766  889999999999875

PyMOL of d2qxfa1

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure