Psyllid ID: psy14502
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | 2.2.26 [Sep-21-2011] | |||||||
| P25539 | 367 | Riboflavin biosynthesis p | N/A | N/A | 0.965 | 0.926 | 0.411 | 5e-73 | |
| O66534 | 356 | Riboflavin biosynthesis p | yes | N/A | 0.968 | 0.957 | 0.384 | 9e-64 | |
| P44326 | 372 | Riboflavin biosynthesis p | yes | N/A | 0.946 | 0.895 | 0.387 | 7e-63 | |
| P70814 | 371 | Riboflavin biosynthesis p | yes | N/A | 0.940 | 0.892 | 0.391 | 7e-63 | |
| Q89AB0 | 372 | Riboflavin biosynthesis p | yes | N/A | 0.960 | 0.908 | 0.402 | 2e-62 | |
| P17618 | 361 | Riboflavin biosynthesis p | yes | N/A | 0.977 | 0.952 | 0.359 | 1e-57 | |
| P50853 | 376 | Riboflavin biosynthesis p | yes | N/A | 0.971 | 0.909 | 0.386 | 3e-57 | |
| Q9Z735 | 376 | Riboflavin biosynthesis p | yes | N/A | 0.863 | 0.808 | 0.371 | 2e-50 | |
| O84735 | 375 | Riboflavin biosynthesis p | yes | N/A | 0.857 | 0.805 | 0.383 | 6e-48 | |
| Q9PLJ6 | 371 | Riboflavin biosynthesis p | yes | N/A | 0.940 | 0.892 | 0.359 | 7e-47 |
| >sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain K12) GN=ribD PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 275 bits (702), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
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Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate. Escherichia coli (strain K12) (taxid: 83333) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 3 |
| >sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain VF5) GN=ribD PE=3 SV=1 | Back alignment and function description |
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| >sp|P44326|RIBD_HAEIN Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribD PE=3 SV=1 | Back alignment and function description |
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| >sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens GN=ribD PE=3 SV=1 | Back alignment and function description |
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| >sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein RibD OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=ribD PE=3 SV=1 | Back alignment and function description |
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| >sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain 168) GN=ribD PE=1 SV=1 | Back alignment and function description |
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| >sp|P50853|RIBD_ACTPL Riboflavin biosynthesis protein RibD OS=Actinobacillus pleuropneumoniae GN=ribD PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein RibD OS=Chlamydia pneumoniae GN=ribD PE=3 SV=1 | Back alignment and function description |
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| >sp|O84735|RIBD_CHLTR Riboflavin biosynthesis protein RibD OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=ribD PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9PLJ6|RIBD_CHLMU Riboflavin biosynthesis protein RibD OS=Chlamydia muridarum (strain MoPn / Nigg) GN=ribD PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| 398832168 | 373 | riboflavin biosynthesis protein RibD [He | 1.0 | 0.943 | 0.592 | 1e-126 | |
| 300312948 | 354 | bifunctional diaminohydroxyphosphoribosy | 1.0 | 0.994 | 0.589 | 1e-125 | |
| 152980375 | 363 | 5-amino-6-(5-phosphoribosylamino)uracil | 0.994 | 0.964 | 0.606 | 1e-124 | |
| 409407402 | 373 | bifuntional protein [Herbaspirillum sp. | 1.0 | 0.943 | 0.603 | 1e-121 | |
| 340788578 | 382 | 5-amino-6-(5-phosphoribosylamino)uracil | 1.0 | 0.921 | 0.573 | 1e-121 | |
| 445495767 | 356 | bifunctional riboflavin biosynthesis pro | 1.0 | 0.988 | 0.558 | 1e-119 | |
| 395761486 | 363 | 5-amino-6-(5-phosphoribosylamino)uracil | 1.0 | 0.969 | 0.555 | 1e-119 | |
| 399018280 | 372 | riboflavin biosynthesis protein RibD [He | 1.0 | 0.946 | 0.583 | 1e-117 | |
| 134095549 | 363 | bifunctional diaminohydroxyphosphoribosy | 0.994 | 0.964 | 0.592 | 1e-117 | |
| 329903444 | 363 | Diamino hydroxy phospho ribosyl amin opy | 1.0 | 0.969 | 0.543 | 1e-111 |
| >gi|398832168|ref|ZP_10590332.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. YR522] gi|398223705|gb|EJN10040.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 209/353 (59%), Positives = 275/353 (77%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL QA ++++PNPRVG VI +++R+I G+T+ PGGNHAEI AL +AA +G DV
Sbjct: 20 MALALIQAGFGMLSTNPNPRVGAVITRQQRVIGVGFTQPPGGNHAEIQALADAAMRGEDV 79
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPCS+FG TPPC +ALI++GI +V+ AI DPNPLV+G+G+A+L +AGI
Sbjct: 80 RGATIYVTLEPCSHFGRTPPCADALIRAGIGRVVAAITDPNPLVAGQGLAKLQAAGIETA 139
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++Q EA EINIGF RM+ G+PWVRMK A+SLD KT+L N SSQWITS+ +R+D HIW
Sbjct: 140 SGVLQDEAAEINIGFLKRMRTGLPWVRMKTAASLDGKTALNNGSSQWITSQAARDDGHIW 199
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAI+ GIGT+ KD+ +L VR+I T QP+RIV+DS L + P RV++GGG+ +FTA
Sbjct: 200 RARACAIMAGIGTIAKDDAQLTVRAIDTPRQPHRIVVDSKLAVSPQARVIEGGGTWVFTA 259
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
++ KR LED G EVIVL N GKVDL A++ ELG+R++NELH+EAG +LN +LI EG
Sbjct: 260 SEDRDKRAALEDKGAEVIVLANAEGKVDLPALLRELGQRQVNELHVEAGSKLNASLIREG 319
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL Y++P L+GE NMF LPP L +I L FHE+++IGPD+RILARF
Sbjct: 320 CVDELLAYLAPCLLGEGRNMFDLPPLQDLQGRIGLHFHEVKQIGPDLRILARF 372
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Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Herbaspirillum seropedicae SmR1] gi|300075733|gb|ADJ65132.1| bifunctional enzyme: diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
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| >gi|152980375|ref|YP_001354124.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Janthinobacterium sp. Marseille] gi|151280452|gb|ABR88862.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
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| >gi|409407402|ref|ZP_11255853.1| bifuntional protein [Herbaspirillum sp. GW103] gi|386433153|gb|EIJ45979.1| bifuntional protein [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
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| >gi|340788578|ref|YP_004754043.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Collimonas fungivorans Ter331] gi|340553845|gb|AEK63220.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
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| >gi|445495767|ref|ZP_21462811.1| bifunctional riboflavin biosynthesis protein RibD [Janthinobacterium sp. HH01] gi|444791928|gb|ELX13475.1| bifunctional riboflavin biosynthesis protein RibD [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
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| >gi|395761486|ref|ZP_10442155.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
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| >gi|399018280|ref|ZP_10720461.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. CF444] gi|398101680|gb|EJL91887.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
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| >gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil reductase [Herminiimonas arsenicoxydans] gi|133739452|emb|CAL62503.1| bifunctional riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
| >gi|329903444|ref|ZP_08273466.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase [Oxalobacteraceae bacterium IMCC9480] gi|327548371|gb|EGF33053.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| UNIPROTKB|P25539 | 367 | ribD "fused diaminohydroxyphos | 0.965 | 0.926 | 0.413 | 2e-65 | |
| TIGR_CMR|SO_3469 | 381 | SO_3469 "riboflavin biosynthes | 0.982 | 0.908 | 0.415 | 1.1e-62 | |
| UNIPROTKB|Q9KPU1 | 367 | VC_2271 "Riboflavin-specific d | 0.951 | 0.912 | 0.383 | 4.6e-57 | |
| TIGR_CMR|VC_2271 | 367 | VC_2271 "riboflavin biosynthes | 0.951 | 0.912 | 0.383 | 4.6e-57 | |
| TIGR_CMR|GSU_1688 | 369 | GSU_1688 "riboflavin biosynthe | 0.977 | 0.932 | 0.377 | 9.6e-57 | |
| TIGR_CMR|DET_1190 | 365 | DET_1190 "riboflavin biosynthe | 0.883 | 0.852 | 0.409 | 3.3e-56 | |
| TIGR_CMR|BA_4331 | 370 | BA_4331 "riboflavin biosynthes | 0.982 | 0.935 | 0.377 | 2.3e-55 | |
| TIGR_CMR|CHY_1475 | 361 | CHY_1475 "riboflavin biosynthe | 0.980 | 0.955 | 0.342 | 6.7e-49 | |
| TIGR_CMR|CPS_0730 | 389 | CPS_0730 "riboflavin biosynthe | 0.963 | 0.871 | 0.365 | 1.1e-48 | |
| TIGR_CMR|SPO_1754 | 364 | SPO_1754 "riboflavin biosynthe | 0.920 | 0.890 | 0.361 | 3.3e-47 |
| UNIPROTKB|P25539 ribD "fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 149/360 (41%), Positives = 219/360 (60%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR +T QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQED-SREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
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|
| TIGR_CMR|SO_3469 SO_3469 "riboflavin biosynthesis protein RibD" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KPU1 VC_2271 "Riboflavin-specific deaminase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_2271 VC_2271 "riboflavin biosynthesis protein RibD" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_1688 GSU_1688 "riboflavin biosynthesis protein RibD" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|DET_1190 DET_1190 "riboflavin biosynthesis protein RibD" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|BA_4331 BA_4331 "riboflavin biosynthesis protein RibD" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CHY_1475 CHY_1475 "riboflavin biosynthesis protein RibD" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_0730 CPS_0730 "riboflavin biosynthesis protein RibD" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SPO_1754 SPO_1754 "riboflavin biosynthesis protein RibD" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P17618 | RIBD_BACSU | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3593 | 0.9772 | 0.9529 | yes | N/A |
| P44326 | RIBD_HAEIN | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3870 | 0.9460 | 0.8951 | yes | N/A |
| Q9PLJ6 | RIBD_CHLMU | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3596 | 0.9403 | 0.8921 | yes | N/A |
| P50853 | RIBD_ACTPL | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3863 | 0.9715 | 0.9095 | yes | N/A |
| O84735 | RIBD_CHLTR | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3833 | 0.8579 | 0.8053 | yes | N/A |
| P70814 | RIBD_BACAM | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3913 | 0.9403 | 0.8921 | yes | N/A |
| Q9Z735 | RIBD_CHLPN | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3717 | 0.8636 | 0.8085 | yes | N/A |
| Q8K9A4 | RIBD1_BUCAP | 3, ., 5, ., 4, ., 2, 6 | 0.5694 | 0.3977 | 0.9523 | yes | N/A |
| P71677 | RIBD_MYCTU | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3210 | 0.8920 | 0.9262 | yes | N/A |
| O66534 | RIBD_AQUAE | 1, ., 1, ., 1, ., 1, 9, 3 | 0.3846 | 0.9687 | 0.9578 | yes | N/A |
| Q89AB0 | RIBD_BUCBP | 1, ., 1, ., 1, ., 1, 9, 3 | 0.4027 | 0.9602 | 0.9086 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.766 |
| 3rd Layer | 3.5.4.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.5.4 | 0.766 |
| 3rd Layer | 3.5.4.26 | 0.824 |
| 3rd Layer | 1.1.1.193 | 0.824 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 352 | |||
| PRK10786 | 367 | PRK10786, ribD, bifunctional diaminohydroxyphospho | 1e-107 | |
| TIGR00326 | 344 | TIGR00326, eubact_ribD, riboflavin biosynthesis pr | 6e-99 | |
| COG1985 | 218 | COG1985, RibD, Pyrimidine reductase, riboflavin bi | 4e-68 | |
| COG0117 | 146 | COG0117, RibD, Pyrimidine deaminase [Coenzyme meta | 3e-55 | |
| TIGR00227 | 216 | TIGR00227, ribD_Cterm, riboflavin-specific deamina | 3e-53 | |
| cd01284 | 115 | cd01284, Riboflavin_deaminase-reductase, Riboflavi | 8e-44 | |
| pfam01872 | 201 | pfam01872, RibD_C, RibD C-terminal domain | 2e-43 | |
| PLN02807 | 380 | PLN02807, PLN02807, diaminohydroxyphosphoribosylam | 1e-39 | |
| PRK05625 | 217 | PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylami | 3e-33 | |
| TIGR01508 | 210 | TIGR01508, rib_reduct_arch, 2, 5-diamino-6-hydroxy | 7e-32 | |
| pfam00383 | 104 | pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti | 4e-22 | |
| PRK14719 | 360 | PRK14719, PRK14719, bifunctional RNAse/5-amino-6-( | 3e-21 | |
| cd01286 | 131 | cd01286, deoxycytidylate_deaminase, Deoxycytidylat | 2e-19 | |
| COG2131 | 164 | COG2131, ComEB, Deoxycytidylate deaminase [Nucleot | 2e-17 | |
| cd01285 | 109 | cd01285, nucleoside_deaminase, Nucleoside deaminas | 1e-16 | |
| cd00786 | 96 | cd00786, cytidine_deaminase-like, Cytidine and deo | 2e-14 | |
| COG0590 | 152 | COG0590, CumB, Cytosine/adenosine deaminases [Nucl | 1e-12 | |
| TIGR02571 | 151 | TIGR02571, ComEB, ComE operon protein 2 | 3e-10 | |
| PHA02588 | 168 | PHA02588, cd, deoxycytidylate deaminase; Provision | 3e-10 | |
| PRK10860 | 172 | PRK10860, PRK10860, tRNA-specific adenosine deamin | 6e-09 | |
| cd01283 | 112 | cd01283, cytidine_deaminase, Cytidine deaminase zi | 0.002 |
| >gnl|CDD|182729 PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
Score = 318 bits (816), Expect = e-107
Identities = 150/364 (41%), Positives = 219/364 (60%), Gaps = 24/364 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNA--AAQGY 57
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A A+G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKG- 65
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI
Sbjct: 66 ----ATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V GLM EA +N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPF 225
RA+S AILT TVL D+P L VR + + QP RIVIDS R+ P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDAQTQALYPQENLRQPVRIVIDSQNRVTPE 241
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
R+++ G T R+ E + ++LP + G +DL ++++LGK++IN + +
Sbjct: 242 HRIVQQPGETWLARTQ-EDSREWPETV--RTLLLPEHNGHLDLVVLMMQLGKQQINSIWV 298
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GP
Sbjct: 299 EAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFSEIRHVGP 358
Query: 345 DIRI 348
D+ +
Sbjct: 359 DVCL 362
|
Length = 367 |
| >gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD | Back alignment and domain information |
|---|
| >gnl|CDD|224896 COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|129330 TIGR00227, ribD_Cterm, riboflavin-specific deaminase C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase | Back alignment and domain information |
|---|
| >gnl|CDD|216753 pfam01872, RibD_C, RibD C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|215433 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine deaminase | Back alignment and domain information |
|---|
| >gnl|CDD|180169 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|130572 TIGR01508, rib_reduct_arch, 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal | Back alignment and domain information |
|---|
| >gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region | Back alignment and domain information |
|---|
| >gnl|CDD|237801 PRK14719, PRK14719, bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain | Back alignment and domain information |
|---|
| >gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases | Back alignment and domain information |
|---|
| >gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region | Back alignment and domain information |
|---|
| >gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2 | Back alignment and domain information |
|---|
| >gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238610 cd01283, cytidine_deaminase, Cytidine deaminase zinc-binding domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| PRK10786 | 367 | ribD bifunctional diaminohydroxyphosphoribosylamin | 100.0 | |
| TIGR00326 | 344 | eubact_ribD riboflavin biosynthesis protein RibD. | 100.0 | |
| PLN02807 | 380 | diaminohydroxyphosphoribosylaminopyrimidine deamin | 100.0 | |
| PRK14719 | 360 | bifunctional RNAse/5-amino-6-(5-phosphoribosylamin | 100.0 | |
| COG0117 | 146 | RibD Pyrimidine deaminase [Coenzyme metabolism] | 100.0 | |
| COG1985 | 218 | RibD Pyrimidine reductase, riboflavin biosynthesis | 100.0 | |
| PRK05625 | 217 | 5-amino-6-(5-phosphoribosylamino)uracil reductase; | 100.0 | |
| TIGR01508 | 210 | rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phospho | 100.0 | |
| TIGR00227 | 216 | ribD_Cterm riboflavin-specific deaminase C-termina | 100.0 | |
| PRK14059 | 251 | hypothetical protein; Provisional | 100.0 | |
| PF01872 | 200 | RibD_C: RibD C-terminal domain; InterPro: IPR00273 | 100.0 | |
| cd01284 | 115 | Riboflavin_deaminase-reductase Riboflavin-specific | 100.0 | |
| PRK10860 | 172 | tRNA-specific adenosine deaminase; Provisional | 99.97 | |
| COG0590 | 152 | CumB Cytosine/adenosine deaminases [Nucleotide tra | 99.96 | |
| PHA02588 | 168 | cd deoxycytidylate deaminase; Provisional | 99.96 | |
| TIGR02571 | 151 | ComEB ComE operon protein 2. This protein is found | 99.95 | |
| cd01285 | 109 | nucleoside_deaminase Nucleoside deaminases include | 99.92 | |
| cd01286 | 131 | deoxycytidylate_deaminase Deoxycytidylate deaminas | 99.92 | |
| COG2131 | 164 | ComEB Deoxycytidylate deaminase [Nucleotide transp | 99.9 | |
| cd00786 | 96 | cytidine_deaminase-like Cytidine and deoxycytidyla | 99.89 | |
| PF00383 | 102 | dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam | 99.85 | |
| KOG1018|consensus | 169 | 99.84 | ||
| cd00209 | 158 | DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-d | 99.8 | |
| COG0262 | 167 | FolA Dihydrofolate reductase [Coenzyme metabolism] | 99.75 | |
| KOG3127|consensus | 230 | 99.69 | ||
| cd01283 | 112 | cytidine_deaminase Cytidine deaminase zinc-binding | 99.53 | |
| PTZ00164 | 514 | bifunctional dihydrofolate reductase-thymidylate s | 99.29 | |
| PRK00478 | 505 | scpA segregation and condensation protein A/unknow | 99.19 | |
| PRK10769 | 159 | folA dihydrofolate reductase; Provisional | 99.1 | |
| PF00186 | 161 | DHFR_1: Dihydrofolate reductase; InterPro: IPR0017 | 98.98 | |
| KOG2771|consensus | 344 | 98.95 | ||
| PF14439 | 136 | Bd3614-deam: Bd3614-like deaminase | 98.77 | |
| TIGR01354 | 127 | cyt_deam_tetra cytidine deaminase, homotetrameric. | 98.54 | |
| KOG1324|consensus | 190 | 97.92 | ||
| PRK06848 | 139 | hypothetical protein; Validated | 97.58 | |
| PRK12411 | 132 | cytidine deaminase; Provisional | 97.56 | |
| PRK05578 | 131 | cytidine deaminase; Validated | 97.02 | |
| TIGR01355 | 283 | cyt_deam_dimer cytidine deaminase, homodimeric. Th | 96.8 | |
| PRK08298 | 136 | cytidine deaminase; Validated | 96.67 | |
| COG0295 | 134 | Cdd Cytidine deaminase [Nucleotide transport and m | 96.59 | |
| PRK09027 | 295 | cytidine deaminase; Provisional | 96.22 | |
| PLN02402 | 303 | cytidine deaminase | 96.2 | |
| PLN02182 | 339 | cytidine deaminase | 95.79 | |
| KOG0833|consensus | 173 | 95.66 | ||
| PF08210 | 188 | APOBEC_N: APOBEC-like N-terminal domain; InterPro: | 95.43 | |
| PF14437 | 146 | MafB19-deam: MafB19-like deaminase | 95.09 | |
| PRK09027 | 295 | cytidine deaminase; Provisional | 95.06 | |
| TIGR01355 | 283 | cyt_deam_dimer cytidine deaminase, homodimeric. Th | 89.84 | |
| PLN02402 | 303 | cytidine deaminase | 86.39 | |
| PF14440 | 118 | XOO_2897-deam: Xanthomonas XOO_2897-like deaminase | 85.03 | |
| PF14431 | 125 | YwqJ-deaminase: YwqJ-like deaminase | 82.39 |
| >PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-82 Score=612.05 Aligned_cols=345 Identities=42% Similarity=0.708 Sum_probs=315.8
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.++++|+||||||++|+||++|||...+.+|||++||+++ +..++|||||||+|||+|+|||||
T Consensus 7 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~ai~~a---~~~~~g~tlyvTlEPC~~~g~t~m 83 (367)
T PRK10786 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKAKGATAYVTLEPCSHHGRTPP 83 (367)
T ss_pred HHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCCCCCCHHHHHHHHH---hhhcCCCEEEEecCCccCCCCChH
Confidence 89999999999 78899999999999999999999999999999999999999 456799999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCcccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
|+.+|+++||+||||+..||++.+.+++.+.|+++||+|+.+++++||.++++.||++.+.+||||++++|+|+||+||.
T Consensus 84 C~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~~~rP~V~~k~A~SlDGkia~ 163 (367)
T PRK10786 84 CCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAM 163 (367)
T ss_pred HHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCcEEEcCCcHHHHHHHHHHHHHHhhcccceEEEEEeecCCCCccC
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCC------------CCCCCeEEEEcCCCCCCCCCc
Q psy14502 160 YNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIK------------TSHQPYRIVIDSYLRIDPFFR 227 (352)
Q Consensus 160 ~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~------------~~~~p~~vvv~~~~~~~~~~~ 227 (352)
.+|++.||++++++.++|++|+.+||||+|++|++.|+|.|++|+.. ..++|++||+|+++++|++.+
T Consensus 164 ~~g~s~~is~~~~~~~~h~lRa~~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~~~~~~~~P~rvV~d~~g~l~~~~~ 243 (367)
T PRK10786 164 ASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDAQTQALYPQENLRQPVRIVIDSQNRVTPEHR 243 (367)
T ss_pred CCCcccccCCHHHHHHHHHHHhHCCEEEECcChHhhcCCCccccccccccccccccccccCCCCcEEEEcCCCCCCchhh
Confidence 99999999999999999999999999999999999999999999642 135899999999999999999
Q ss_pred ccc-CCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEE
Q psy14502 228 VLK-GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLL 306 (352)
Q Consensus 228 ~~~-~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l 306 (352)
+|+ ..++|+++++... ..+ ..+++.+.+...++++|+.++++.|+++|+++||||||++|+++|+++|||||+++
T Consensus 244 ~f~~~~~~~i~~~~~~~---~~~-~~~~~~~~v~~~~~~vdl~~~L~~L~~~Gi~~l~veGG~~l~~~~l~~~lvDe~~~ 319 (367)
T PRK10786 244 IVQQPGETWLARTQEDS---REW-PETVRTLLLPEHNGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIV 319 (367)
T ss_pred hhcCCCCEEEEEcCchh---hhh-hcCceEEEEeCCCCCcCHHHHHHHHHhCCCCEEEEeeCHHHHHHHHHCCCccEEEE
Confidence 998 7789999865422 112 33666443433344799999999999999999999999999999999999999999
Q ss_pred EEeceeecCC-CCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 307 YISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 307 ~i~P~ilG~g-~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
+++|+++|++ .++|.+.++..+.+..+|++.+++.+|++++++|+|
T Consensus 320 ~~aP~~~G~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~D~~~~~~~ 366 (367)
T PRK10786 320 YIAPKLLGSDARGLCTLPGLEKLADAPQFKFSEIRHVGPDVCLHLVP 366 (367)
T ss_pred EEcceeccCCCcccccccCccChhhCcccEEeeEEEECCeEEEEEEe
Confidence 9999999986 677887778778888999999999999999999975
|
|
| >TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD | Back alignment and domain information |
|---|
| >PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase | Back alignment and domain information |
|---|
| >PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
| >COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated | Back alignment and domain information |
|---|
| >TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal | Back alignment and domain information |
|---|
| >TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain | Back alignment and domain information |
|---|
| >PRK14059 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i | Back alignment and domain information |
|---|
| >cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase | Back alignment and domain information |
|---|
| >PRK10860 tRNA-specific adenosine deaminase; Provisional | Back alignment and domain information |
|---|
| >COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PHA02588 cd deoxycytidylate deaminase; Provisional | Back alignment and domain information |
|---|
| >TIGR02571 ComEB ComE operon protein 2 | Back alignment and domain information |
|---|
| >cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases | Back alignment and domain information |
|---|
| >cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain | Back alignment and domain information |
|---|
| >COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region | Back alignment and domain information |
|---|
| >PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 | Back alignment and domain information |
|---|
| >KOG1018|consensus | Back alignment and domain information |
|---|
| >cd00209 DHFR Dihydrofolate reductase (DHFR) | Back alignment and domain information |
|---|
| >COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >KOG3127|consensus | Back alignment and domain information |
|---|
| >cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain | Back alignment and domain information |
|---|
| >PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
| >PRK10769 folA dihydrofolate reductase; Provisional | Back alignment and domain information |
|---|
| >PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1 | Back alignment and domain information |
|---|
| >KOG2771|consensus | Back alignment and domain information |
|---|
| >PF14439 Bd3614-deam: Bd3614-like deaminase | Back alignment and domain information |
|---|
| >TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric | Back alignment and domain information |
|---|
| >KOG1324|consensus | Back alignment and domain information |
|---|
| >PRK06848 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12411 cytidine deaminase; Provisional | Back alignment and domain information |
|---|
| >PRK05578 cytidine deaminase; Validated | Back alignment and domain information |
|---|
| >TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric | Back alignment and domain information |
|---|
| >PRK08298 cytidine deaminase; Validated | Back alignment and domain information |
|---|
| >COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09027 cytidine deaminase; Provisional | Back alignment and domain information |
|---|
| >PLN02402 cytidine deaminase | Back alignment and domain information |
|---|
| >PLN02182 cytidine deaminase | Back alignment and domain information |
|---|
| >KOG0833|consensus | Back alignment and domain information |
|---|
| >PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme | Back alignment and domain information |
|---|
| >PF14437 MafB19-deam: MafB19-like deaminase | Back alignment and domain information |
|---|
| >PRK09027 cytidine deaminase; Provisional | Back alignment and domain information |
|---|
| >TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric | Back alignment and domain information |
|---|
| >PLN02402 cytidine deaminase | Back alignment and domain information |
|---|
| >PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase | Back alignment and domain information |
|---|
| >PF14431 YwqJ-deaminase: YwqJ-like deaminase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 352 | ||||
| 2o7p_A | 380 | The Crystal Structure Of Ribd From Escherichia Coli | 9e-69 | ||
| 2g6v_A | 402 | The Crystal Structure Of Ribd From Escherichia Coli | 1e-68 | ||
| 2b3z_A | 373 | Crystal Structure Of A Bifunctional Deaminase And R | 8e-59 | ||
| 2hxv_A | 360 | Crystal Structure Of A Diaminohydroxyphosphoribosyl | 6e-45 | ||
| 2azn_A | 219 | X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h) | 8e-23 | ||
| 1z3a_A | 168 | Crystal Structure Of Trna Adenosine Deaminase Tada | 6e-09 | ||
| 3ocq_A | 183 | Crystal Structure Of Trna-Specific Adenosine Deamin | 1e-08 | ||
| 1vq2_A | 193 | Crystal Structure Of T4-Bacteriophage Deoxycytidyla | 7e-06 | ||
| 2hvv_A | 184 | Crystal Structure Of Dcmp Deaminase From Streptococ | 1e-05 | ||
| 2nx8_A | 179 | The Crystal Structure Of The Trna-Specific Adenosin | 8e-05 | ||
| 1wwr_A | 171 | Crystal Structure Of Trna Adenosine Deaminase Tada | 2e-04 | ||
| 2b3j_A | 159 | Crystal Structure Of Staphylococcus Aureus Trna Ade | 2e-04 | ||
| 2w4l_A | 178 | Human Dcmp Deaminase Length = 178 | 3e-04 |
| >pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In Complex With The Oxidised Nadp+ Cofactor In The Active Site Of The Reductase Domain Length = 380 | Back alignment and structure |
|
| >pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli Length = 402 | Back alignment and structure |
| >pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis Length = 373 | Back alignment and structure |
| >pdb|2HXV|A Chain A, Crystal Structure Of A Diaminohydroxyphosphoribosylaminopyrimidine Deaminase 5-Amino-6-(5-Phosphoribosylamino)uracil Reductase (Tm1828) From Thermotoga Maritima At 1.80 A Resolution Length = 360 | Back alignment and structure |
| >pdb|2AZN|A Chain A, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5- Phosphate Reductase Length = 219 | Back alignment and structure |
| >pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 | Back alignment and structure |
| >pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 | Back alignment and structure |
| >pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate Deaminase, Mutant R115e Length = 193 | Back alignment and structure |
| >pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus Mutans Length = 184 | Back alignment and structure |
| >pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 | Back alignment and structure |
| >pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 | Back alignment and structure |
| >pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 | Back alignment and structure |
| >pdb|2W4L|A Chain A, Human Dcmp Deaminase Length = 178 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 | Back alignment and structure |
|---|
Score = 473 bits (1220), Expect = e-168
Identities = 126/357 (35%), Positives = 200/357 (56%), Gaps = 11/357 (3%)
Query: 1 MTLALQQAKLSINS-SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK NP VG V+VK+ +I+ G G HAE+ A+ A G
Sbjct: 18 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMA---GAHA 74
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPCS++G TPPC E +I SGIK+V +A+ DPNPLV+G+G++ + AGI V+
Sbjct: 75 EGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR 134
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+G++ +A +N F M+ G+P+V +K A+SLD K + S+WITS+ +R D+ +
Sbjct: 135 EGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQY 194
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIF 237
R +IL G+GTV DNP L R + QP R+++D+ L I +V+ + IF
Sbjct: 195 RKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICDQIAPTWIF 254
Query: 238 TATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T K+K L G + L ++ + V+ L + I +++E G ++ + +
Sbjct: 255 TTARADEEKKKRLSAFGVNIFTLET--ERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFV 312
Query: 297 LEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EGC E++ Y +P LIG A ++ + S+ L+F +I +IG DI++ A+
Sbjct: 313 KEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAK 369
|
| >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 | Back alignment and structure |
|---|
| >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 | Back alignment and structure |
|---|
| >2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2 Length = 219 | Back alignment and structure |
|---|
| >2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae} Length = 270 | Back alignment and structure |
|---|
| >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 | Back alignment and structure |
|---|
| >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 | Back alignment and structure |
|---|
| >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 | Back alignment and structure |
|---|
| >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 | Back alignment and structure |
|---|
| >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 | Back alignment and structure |
|---|
| >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 | Back alignment and structure |
|---|
| >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 | Back alignment and structure |
|---|
| >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 | Back alignment and structure |
|---|
| >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 | Back alignment and structure |
|---|
| >2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 | Back alignment and structure |
|---|
| >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 | Back alignment and structure |
|---|
| >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| 2b3z_A | 373 | Riboflavin biosynthesis protein RIBD; alpha/beta/a | 100.0 | |
| 2g6v_A | 402 | Riboflavin biosynthesis protein RIBD; RIBD APO str | 100.0 | |
| 2hxv_A | 360 | Diaminohydroxyphosphoribosylaminopyrimidine deami | 100.0 | |
| 2azn_A | 219 | HTP reductase, putative 5-amino-6-(5-phosphoribosy | 100.0 | |
| 2p4g_A | 270 | Hypothetical protein; pyrimidine reductase-like pr | 100.0 | |
| 2nx8_A | 179 | TRNA-specific adenosine deaminase; TAD, hydrolase; | 100.0 | |
| 3dh1_A | 189 | TRNA-specific adenosine deaminase 2; zinc-binding | 100.0 | |
| 2b3j_A | 159 | TRNA adenosine deaminase; mixed alpha-beta, protei | 99.98 | |
| 2g84_A | 197 | Cytidine and deoxycytidylate deaminase zinc-bindi; | 99.97 | |
| 1z3a_A | 168 | TRNA-specific adenosine deaminase; tRNA adenosine | 99.97 | |
| 2gd9_A | 189 | Hypothetical protein YYAP; structural genomics, jo | 99.97 | |
| 2a8n_A | 144 | Cytidine and deoxycytidylate deaminase; RNA editin | 99.97 | |
| 1wwr_A | 171 | TRNA adenosine deaminase TADA; homodimer, riken st | 99.97 | |
| 1wkq_A | 164 | Guanine deaminase; domain SWAP, the cytidine deami | 99.97 | |
| 3jtw_A | 178 | Dihydrofolate reductase; YP_805003.1, structural G | 99.97 | |
| 1p6o_A | 161 | Cytosine deaminase; hydrolase, dimer, inhibitor bo | 99.97 | |
| 2xw7_A | 178 | Dihydrofolate reductase; oxidoreductase, NADPH; HE | 99.97 | |
| 3ky8_A | 197 | Putative riboflavin biosynthesis protein; structur | 99.96 | |
| 1vq2_A | 193 | DCMP deaminase, deoxycytidylate deaminase; hydrola | 99.96 | |
| 2w4l_A | 178 | DCMP deaminse, deoxycytidylate deaminase; pyrimidi | 99.96 | |
| 1cz3_A | 168 | Dihydrofolate reductase; dimer, hyperthermophIle, | 99.95 | |
| 2hvw_A | 184 | Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa | 99.95 | |
| 3g8q_A | 278 | Predicted RNA-binding protein, contains thump doma | 99.91 | |
| 3kgy_A | 231 | Bifunctional deaminase-reductase domain protein; p | 99.88 | |
| 2nyt_A | 190 | Probable C->U-editing enzyme apobec-2; cytidine de | 99.84 | |
| 1vdr_A | 162 | DHFR, dihydrofolate reductase; oxidoreductase, hal | 99.84 | |
| 1zdr_A | 164 | Dihydrofolate reductase; DHFR, NADP, oxidoreductas | 99.8 | |
| 1kmv_A | 186 | DHFR, dihydrofolate reductase; oxidoreductase, ant | 99.78 | |
| 3ix9_A | 190 | Dihydrofolate reductase; central beta sheet surrou | 99.77 | |
| 1aoe_A | 192 | DHFR, dihydrofolate reductase; oxidoreductase, ant | 99.76 | |
| 3cse_A | 227 | Dihydrofolate reductase; protein-ligand complex, o | 99.74 | |
| 2w3w_A | 167 | Dihydrofolate reductase; nonclassical antifolates, | 99.74 | |
| 2w9h_A | 159 | DHFR, dihydrofolate reductase; oxidoreductase, one | 99.73 | |
| 3s9u_A | 165 | Dihydrofolate reductase; oxidoreductase; HET: NAP | 99.68 | |
| 3dfr_A | 162 | Dihydrofolate reductase; oxido-reductase; HET: NDP | 99.68 | |
| 3nzb_X | 206 | Dihydrofolate reductase; pneumocystius carinii DHF | 99.65 | |
| 3tq8_A | 178 | Dihydrofolate reductase; oxidoreductase-oxidoreduc | 99.65 | |
| 1df7_A | 159 | DHFR, dihydrofolate reductase; structure-based inh | 99.64 | |
| 3ia4_A | 162 | Dihydrofolate reductase; NADPH, methotrexate, oxid | 99.63 | |
| 1j3k_A | 280 | Bifunctional dihydrofolate reductase-thymidylate s | 99.6 | |
| 3dau_A | 159 | Dihydrofolate reductase; oxidoreductase, pseudo-ro | 99.58 | |
| 3nrr_A | 515 | Dihydrofolate reductase-thymidylate synthase; stru | 99.56 | |
| 3hj3_A | 521 | Chain A, crystal structure of DHFR; TS, enzyme, cr | 99.52 | |
| 2bl9_A | 238 | Dihydrofolate reductase-thymidylate synthase; plam | 99.52 | |
| 3rg9_A | 240 | Bifunctional dihydrofolate reductase-thymidylate; | 99.42 | |
| 1juv_A | 193 | DHFR, dihydrofolate reductase; complexed with NADP | 99.34 | |
| 1uwz_A | 136 | Cytidine deaminase; CDD, tetramer, zinc binding, p | 99.24 | |
| 2fr5_A | 146 | Cytidine deaminase; tetrahydrouridine, protein-inh | 99.1 | |
| 2z3g_A | 130 | Blasticidin-S deaminase; hydrolase, cytidine deami | 99.09 | |
| 3irm_A | 521 | Bifunctional dihydrofolate reductase-thymidylate; | 99.03 | |
| 3qg2_A | 608 | Bifunctional dihydrofolate reductase-thymidylate; | 98.96 | |
| 3b8f_A | 142 | Putative blasticidin S deaminase; cytidine deamina | 98.49 | |
| 1r5t_A | 142 | Cytidine deaminase; zinc dependent deaminase, RNA | 98.46 | |
| 3r2n_A | 138 | Cytidine deaminase; structural genomics, seattle s | 98.4 | |
| 2d30_A | 141 | Cytidine deaminase; purines, pyrimidines, nucleosi | 98.38 | |
| 3mpz_A | 150 | Cytidine deaminase; ssgcid, structu genomics, seat | 97.89 | |
| 1ctt_A | 294 | Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es | 97.72 | |
| 1ctt_A | 294 | Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es | 97.66 | |
| 3dmo_A | 138 | Cytidine deaminase; structural genomics, seattle s | 97.27 | |
| 3oj6_A | 158 | Blasticidin-S deaminase; ssgcid, seattle structura | 97.11 | |
| 4eg2_A | 298 | Cytidine deaminase; UMP synthesis, Zn binding, hyd | 95.82 | |
| 3v4k_A | 203 | DNA DC->DU-editing enzyme apobec-3G; antiviral def | 95.22 | |
| 4eg2_A | 298 | Cytidine deaminase; UMP synthesis, Zn binding, hyd | 94.38 | |
| 3vow_A | 190 | Probable DNA DC->DU-editing enzyme apobec-3C; anti | 92.51 |
| >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-85 Score=631.42 Aligned_cols=347 Identities=36% Similarity=0.631 Sum_probs=325.6
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.+.|||+||||||+||+||++|||...+++|||++||+++ +..++|||||||+|||+|||||||
T Consensus 18 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a---~~~~~g~tlyvTlePC~~~G~t~~ 94 (373)
T 2b3z_A 18 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMA---GAHAEGADIYVTLEPCSHYGKTPP 94 (373)
T ss_dssp HHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCSTTSCCHHHHHHHHH---GGGGTTCEEEESSCCCCCCSSSCC
T ss_pred HHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHh---hHhcCCeEEEEeCCCccCcCCChH
Confidence 89999999999 77899999999999999999999999999999999999999 457899999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCcccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
|+++|+|+||+||||+..||++.+.+.|++.|+++||+|+.+++++||.++++.||++++.+||||++++|+||||+|+.
T Consensus 95 C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~lk~A~SLDG~Ia~ 174 (373)
T 2b3z_A 95 CAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIAT 174 (373)
T ss_dssp HHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETTSBSSC
T ss_pred HHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCeEEEeCCcccccccccceeeeeccccchhheeeeeecCCCceec
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCCCcccc--CCceEEE
Q psy14502 160 YNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK--GGGSCIF 237 (352)
Q Consensus 160 ~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~--~~~~~v~ 237 (352)
++|++.|+++++++.++|++|+.+|+||+|++|++.|+|.|++||+...++|.+||+|+++++|++.++|+ ..|+||+
T Consensus 175 ~~G~~~Wit~~~~~~~~~~lr~~~daILvGr~T~~~d~P~Lt~R~~~g~~~P~rvVld~~~~lp~~a~~~~~~~~~~iV~ 254 (373)
T 2b3z_A 175 STGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICDQIAPTWIF 254 (373)
T ss_dssp TTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEEEECTTCCCCTTCHHHHSCSSCEEEE
T ss_pred cCCCccccCCHHHHHHHHHHHHHCCEEEEChhhhhhcCCcccccCcCCCCCCeEEEEcCCCCCCCcchhhcCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999864348999999999999999888887 6889999
Q ss_pred EcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecC-
Q psy14502 238 TATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGE- 315 (352)
Q Consensus 238 t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~- 315 (352)
|++. +.++...+++.|++++.+.+ ++.|+.++++.|+++|+++|+||||++|+++||++|||||++++++|+++|+
T Consensus 255 t~~~~~~~~~~~l~~~gv~vi~~~~--~~~dl~~~l~~L~~~g~~~vlveGG~~l~~s~L~agLVDEl~l~iaP~llG~~ 332 (373)
T 2b3z_A 255 TTARADEEKKKRLSAFGVNIFTLET--ERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGT 332 (373)
T ss_dssp ECTTSCHHHHHHHHTTTCEEEECSS--SSCCHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHTCCSEEEEEEESBCCCCS
T ss_pred EcCCCCHHHHHHHHhCCcEEEEeCC--CCCCHHHHHHHHHHCCCCEEEEEEhHHHHHHHHhCCCceEEEEEEcceEecCC
Confidence 9876 55566778889999988742 3689999999999999999999999999999999999999999999999998
Q ss_pred -CCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 316 -AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 316 -g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
|+++|++.++..+.+..+|++++++.++++++++|++
T Consensus 333 ~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~dv~l~y~~ 370 (373)
T 2b3z_A 333 HAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKP 370 (373)
T ss_dssp SSCBSSCSSCCSSTTSSCBEEEEEEEEETTEEEEEEEE
T ss_pred CCcCcccccccccccccccceEeEEEEECCcEEEEEEE
Confidence 7999987777777788999999999999999999974
|
| >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* | Back alignment and structure |
|---|
| >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 | Back alignment and structure |
|---|
| >2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2 | Back alignment and structure |
|---|
| >2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
| >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} | Back alignment and structure |
|---|
| >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 | Back alignment and structure |
|---|
| >2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 | Back alignment and structure |
|---|
| >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A | Back alignment and structure |
|---|
| >2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 | Back alignment and structure |
|---|
| >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 | Back alignment and structure |
|---|
| >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A | Back alignment and structure |
|---|
| >3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745} | Back alignment and structure |
|---|
| >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A | Back alignment and structure |
|---|
| >2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica} | Back alignment and structure |
|---|
| >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 | Back alignment and structure |
|---|
| >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A* | Back alignment and structure |
|---|
| >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* | Back alignment and structure |
|---|
| >3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} | Back alignment and structure |
|---|
| >3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl} | Back alignment and structure |
|---|
| >2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A | Back alignment and structure |
|---|
| >1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A | Back alignment and structure |
|---|
| >1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ... | Back alignment and structure |
|---|
| >3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A* | Back alignment and structure |
|---|
| >3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A* | Back alignment and structure |
|---|
| >2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A* | Back alignment and structure |
|---|
| >2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ... | Back alignment and structure |
|---|
| >3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A* | Back alignment and structure |
|---|
| >3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A* | Back alignment and structure |
|---|
| >3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A* | Back alignment and structure |
|---|
| >3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A* | Back alignment and structure |
|---|
| >1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A* | Back alignment and structure |
|---|
| >3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A* | Back alignment and structure |
|---|
| >1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A* | Back alignment and structure |
|---|
| >3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ... | Back alignment and structure |
|---|
| >3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* | Back alignment and structure |
|---|
| >3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* | Back alignment and structure |
|---|
| >2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A* | Back alignment and structure |
|---|
| >3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A* | Back alignment and structure |
|---|
| >1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1 | Back alignment and structure |
|---|
| >1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* | Back alignment and structure |
|---|
| >2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* | Back alignment and structure |
|---|
| >2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* | Back alignment and structure |
|---|
| >3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* | Back alignment and structure |
|---|
| >3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A* | Back alignment and structure |
|---|
| >3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} | Back alignment and structure |
|---|
| >1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 | Back alignment and structure |
|---|
| >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 | Back alignment and structure |
|---|
| >2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 | Back alignment and structure |
|---|
| >3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A | Back alignment and structure |
|---|
| >1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* | Back alignment and structure |
|---|
| >1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* | Back alignment and structure |
|---|
| >3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} | Back alignment and structure |
|---|
| >4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} | Back alignment and structure |
|---|
| >3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* | Back alignment and structure |
|---|
| >4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} | Back alignment and structure |
|---|
| >3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 352 | ||||
| d2azna1 | 219 | c.71.1.2 (A:6-224) HTP reductase {Methanococcus ja | 5e-38 | |
| d2hxva1 | 198 | c.71.1.2 (A:148-345) Riboflavin biosynthesis prote | 9e-36 | |
| d2b3za1 | 214 | c.71.1.2 (A:146-359) Riboflavin biosynthesis prote | 4e-35 | |
| d2b3za2 | 145 | c.97.1.2 (A:1-145) Riboflavin biosynthesis protein | 2e-28 | |
| d2hxva2 | 147 | c.97.1.2 (A:1-147) Riboflavin biosynthesis protein | 2e-26 | |
| d1z3aa1 | 156 | c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA | 3e-20 | |
| d1wwra1 | 151 | c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { | 5e-19 | |
| d2b3ja1 | 151 | c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { | 2e-18 | |
| d1p6oa_ | 156 | c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S | 7e-18 | |
| d2g84a1 | 189 | c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr | 3e-17 | |
| d1vq2a_ | 193 | c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop | 4e-17 | |
| d1wkqa_ | 158 | c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub | 1e-15 | |
| d2a8na1 | 130 | c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de | 4e-14 |
| >d2azna1 c.71.1.2 (A:6-224) HTP reductase {Methanococcus jannaschii [TaxId: 2190]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Dihydrofolate reductase-like superfamily: Dihydrofolate reductase-like family: RibD C-terminal domain-like domain: HTP reductase species: Methanococcus jannaschii [TaxId: 2190]
Score = 133 bits (335), Expect = 5e-38
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 6/214 (2%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P++ + +LD K + NN S I+ +E H RA I+ GIGTVLKD+PRL V
Sbjct: 4 PYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTV 62
Query: 203 RSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCI---FTATDLPMKRKILEDLGHEVIVL 259
IK+ P RIV+DS LR+ RVL I T+ ++KI V V+
Sbjct: 63 HKIKSDRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVV 122
Query: 260 PNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIG--EAY 317
GKVDL+ ++ L + I + +E G LN + EG VDE+ +YI+P + G EA
Sbjct: 123 KCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAP 182
Query: 318 NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
++D+ +KL+ ++G I + +
Sbjct: 183 TYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFK 216
|
| >d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 198 | Back information, alignment and structure |
|---|
| >d2b3za1 c.71.1.2 (A:146-359) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 214 | Back information, alignment and structure |
|---|
| >d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 | Back information, alignment and structure |
|---|
| >d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 | Back information, alignment and structure |
|---|
| >d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 | Back information, alignment and structure |
|---|
| >d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 | Back information, alignment and structure |
|---|
| >d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 | Back information, alignment and structure |
|---|
| >d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 | Back information, alignment and structure |
|---|
| >d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 | Back information, alignment and structure |
|---|
| >d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 | Back information, alignment and structure |
|---|
| >d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 | Back information, alignment and structure |
|---|
| >d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| d2b3za1 | 214 | Riboflavin biosynthesis protein RibD {Bacillus sub | 100.0 | |
| d2azna1 | 219 | HTP reductase {Methanococcus jannaschii [TaxId: 21 | 100.0 | |
| d2hxva2 | 147 | Riboflavin biosynthesis protein RibD {Thermotoga m | 100.0 | |
| d2hxva1 | 198 | Riboflavin biosynthesis protein RibD {Thermotoga m | 100.0 | |
| d2b3za2 | 145 | Riboflavin biosynthesis protein RibD {Bacillus sub | 100.0 | |
| d1z3aa1 | 156 | tRNA adenosine deaminase TadA {Escherichia coli [T | 99.98 | |
| d2b3ja1 | 151 | tRNA adenosine deaminase TadA {Staphylococcus aure | 99.97 | |
| d1wwra1 | 151 | tRNA adenosine deaminase TadA {Aquifex aeolicus [T | 99.97 | |
| d1p6oa_ | 156 | Cytosine deaminase {Baker's yeast (Saccharomyces c | 99.97 | |
| d2g84a1 | 189 | Putative deaminase NE0047 {Nitrosomonas europaea [ | 99.96 | |
| d1wkqa_ | 158 | Guanine deaminase GuaD {Bacillus subtilis [TaxId: | 99.96 | |
| d2a8na1 | 130 | Cytidine and deoxycytidylate deaminase CodA {Agrob | 99.95 | |
| d1vq2a_ | 193 | Deoxycytidylate deaminase {Bacteriophage T4 [TaxId | 99.95 | |
| d1d1ga_ | 164 | Dihydrofolate reductase, prokaryotic type {Thermot | 99.93 | |
| d1vdra_ | 157 | Dihydrofolate reductase, prokaryotic type {Halofer | 99.2 | |
| d1seja1 | 178 | Bifunctional enzyme dihydrofolate reductase-thymid | 99.05 | |
| d3dfra_ | 162 | Dihydrofolate reductase, prokaryotic type {Lactoba | 98.91 | |
| d2fzia1 | 206 | Dihydrofolate reductases, eukaryotic type {Fungus | 98.9 | |
| d1j3ka_ | 231 | Bifunctional enzyme dihydrofolate reductase-thymid | 98.82 | |
| d1ra9a_ | 159 | Dihydrofolate reductase, prokaryotic type {Escheri | 98.66 | |
| d1kmva_ | 186 | Dihydrofolate reductases, eukaryotic type {Human ( | 98.6 | |
| d1aoea_ | 192 | Dihydrofolate reductases, eukaryotic type {Yeast ( | 98.52 | |
| d1df7a_ | 159 | Dihydrofolate reductase, prokaryotic type {Mycobac | 98.29 | |
| d1alna2 | 144 | Two-domain cytidine deaminase {Escherichia coli [T | 98.03 | |
| d1juva_ | 193 | Dihydrofolate reductase, prokaryotic type {Bacteri | 97.8 | |
| d1r5ta_ | 141 | mono-domain cytidine deaminase {Baker's yeast (Sac | 97.68 | |
| d2fr5a1 | 136 | mono-domain cytidine deaminase {Mouse (Mus musculu | 97.51 | |
| d1uwza_ | 130 | mono-domain cytidine deaminase {Bacillus subtilis | 97.4 | |
| d2d30a1 | 124 | mono-domain cytidine deaminase {Bacillus anthracis | 97.38 | |
| d2z3ga1 | 123 | Blasticidin-S deaminase {Aspergillus terreus [TaxI | 96.75 | |
| d1alna1 | 150 | Two-domain cytidine deaminase {Escherichia coli [T | 96.6 |
| >d2b3za1 c.71.1.2 (A:146-359) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Dihydrofolate reductase-like superfamily: Dihydrofolate reductase-like family: RibD C-terminal domain-like domain: Riboflavin biosynthesis protein RibD species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.7e-44 Score=320.40 Aligned_cols=208 Identities=31% Similarity=0.537 Sum_probs=194.4
Q ss_pred ceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCC
Q psy14502 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI 222 (352)
Q Consensus 143 P~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~ 222 (352)
|||++|+|+|+||+||..+|++.||++++++.++|++|+.+|||++|++|++.|+|.+++|..+...+|.+||+|+++++
T Consensus 1 P~V~~k~A~SlDG~Ia~~~g~s~wit~~~sr~~~h~lR~~~dailvG~~Tv~~D~p~l~~R~~~~~~~p~~vv~d~~l~~ 80 (214)
T d2b3za1 1 PYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSI 80 (214)
T ss_dssp CEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEEEECTTCCC
T ss_pred CEEEEEEEECCCCCEECCCCccCCCCCHHHHHHHHHHHHhcccchhhhcccccccchhcccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999887889999999999999
Q ss_pred CCCCcccc--CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcC
Q psy14502 223 DPFFRVLK--GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299 (352)
Q Consensus 223 ~~~~~~~~--~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~g 299 (352)
+++.++|. ..+.++++... +..+...++..+++++..... ..|+.++++.|+++|+++|+||||++++++||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~l~~L~~~gi~~ilvEGG~~l~~sfl~~~ 158 (214)
T d2b3za1 81 PEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETE--RIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEG 158 (214)
T ss_dssp CTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSS--SCCHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHT
T ss_pred cccceEEEeeccccccccchhhhhhhhhhhhhccccccccccc--ccchHHHHHHHHHCCCCEEEEEccHHHHHHHHhcC
Confidence 99999887 67778777765 566778889999999988754 78999999999999999999999999999999999
Q ss_pred CCcEEEEEEeceeecCC--CCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 300 CVDELLLYISPILIGEA--YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 300 LvDEi~l~i~P~ilG~g--~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
||||++++++|+++|+. +++|++.++..+.+..+|++++++++|++++++|+|
T Consensus 159 LvDEl~l~iaP~ilG~~~~~~~~~~~~~~~l~~~~~l~l~~~~~~g~Di~l~~~p 213 (214)
T d2b3za1 159 CFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKP 213 (214)
T ss_dssp CCSEEEEEEESBCCCCSSSCBSSCSSCCSSTTSSCBEEEEEEEEETTEEEEEEEE
T ss_pred chheeeeEECCeeecCCCCccccCCcCccChhhccccEeeeEEEECCeEEEEEEE
Confidence 99999999999999974 778898888888889999999999999999999986
|
| >d2azna1 c.71.1.2 (A:6-224) HTP reductase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
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| >d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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| >d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Haloferax volcanii [TaxId: 2246]} | Back information, alignment and structure |
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| >d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, DFR domain {Cryptosporidium hominis [TaxId: 237895]} | Back information, alignment and structure |
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| >d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
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| >d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic type {Fungus (Pneumocystis carinii) [TaxId: 4754]} | Back information, alignment and structure |
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| >d1j3ka_ c.71.1.1 (A:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, DFR domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
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| >d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
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| >d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
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| >d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} | Back information, alignment and structure |
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| >d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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