Psyllid ID: psy14514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MFLVQTVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK
Secondary Structure (PSIPRED)
ccEEEEcccccccccccEEEcccccccccEEEEEEEEccccEEEEccccHHHHHHHHHHcHHccccccccEEEEEEEEEEEccccEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccEEccHHHcccccccEEEEEEcccEEEEEccccHHHHHHHHHHHHHccccccccEEEEEEEEEEEccEEEEEEEc
Coil and Loop (DISEMBL)
MFLVQTVLKGiyeenlpvfegssvwdsdyytgqvgsypysgfyqdlsaNHNDFLAQLDMLrkggwitraTRVVFIDFSMYNANVNLFCFVK
Flexible Loop (DISEMBL)
MFLVQTVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK
Low Complexity Region (SEG)
MFLVQTVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK
Disordered region (IsUnstruct)
*FLVQTVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV*
Disordered Region (DISOPRED)
*FL**T*LKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK
Disordered Region (DISEMBL)
MFLVQTVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK
Disordered Region (DISPRO)
MFLVQTVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLVQTVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
O35245	966	Polycystin-2 OS=Mus muscu	yes	N/A	0.736	0.069	0.479	6e-13
Q4GZT3	970	Polycystin-2 OS=Bos tauru	yes	N/A	0.736	0.069	0.424	3e-12
Q13563	968	Polycystin-2 OS=Homo sapi	yes	N/A	0.714	0.067	0.464	1e-11
Q9P0L9	805	Polycystic kidney disease	no	N/A	0.659	0.074	0.483	2e-10
Q9NZM6	624	Polycystic kidney disease	no	N/A	0.725	0.105	0.454	7e-10
Q9JLG4	621	Polycystic kidney disease	no	N/A	0.714	0.104	0.461	1e-09
Q9U1S7	716	Polycystin-2 OS=Caenorhab	yes	N/A	0.659	0.083	0.409	9e-08
Q7TN88	2461	Polycystic kidney disease	no	N/A	0.648	0.023	0.389	1e-05
Q2EG98	2201	Polycystic kidney disease	no	N/A	0.648	0.026	0.338	2e-05
Q7Z442	2459	Polycystic kidney disease	no	N/A	0.714	0.026	0.323	0.0002

>sp|O35245|PKD2_MOUSE Polycystin-2 OS=Mus musculus GN=Pkd2 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GSS W      G + SY  +G+Y DLS    +  AQL  LR+  W+ R TR  FIDFS
Sbjct: 372 LNGSSHW------GIIASYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAAFIDFS 425

Query: 79  MYNANVNLFCFVK 91
           +YNAN+NLFC V+
Sbjct: 426 VYNANINLFCVVR 438

Involved in fluid-flow mechanosensation by the primary cilium in renal epithelium. PKD1 and PKD2 may function through a common signaling pathway that is necessary for normal tubulogenesis (By similarity). Acts as a regulator of cilium length, together with PKD1. The dynamic control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling. Functions as a calcium permeable cation channel.
Mus musculus (taxid: 10090)

>sp|Q4GZT3|PKD2_BOVIN Polycystin-2 OS=Bos taurus GN=PKD2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GSS W      G + +Y  +G+Y DLS    +  AQ+  L+K  W+ R TR +FIDF+
Sbjct: 376 LNGSSHW------GMIATYSGAGYYLDLSRTREETAAQVANLKKNVWLDRGTRAIFIDFT 429

Query: 79  MYNANVNLFCFVK 91
           +YNAN+NLFC ++
Sbjct: 430 VYNANINLFCVIR 442

Functions as a calcium permeable cation channel. PKD1 and PKD2 may function through a common signaling pathway that is necessary for normal tubulogenesis.

Bos taurus (taxid: 9913)

>sp|Q13563|PKD2_HUMAN Polycystin-2 OS=Homo sapiens GN=PKD2 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 21  GSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMY 80
           GSS W      G + +Y  +G+Y DLS    +  AQ+  L+K  W+ R TR  FIDFS+Y
Sbjct: 376 GSSHW------GIIATYSGAGYYLDLSRTREETAAQVASLKKNVWLDRGTRATFIDFSVY 429

Query: 81  NANVNLFCFVK 91
           NAN+NLFC V+
Sbjct: 430 NANINLFCVVR 440

Involved in fluid-flow mechanosensation by the primary cilium in renal epithelium (By similarity). PKD1 and PKD2 may function through a common signaling pathway that is necessary for normal tubulogenesis (By similarity). Acts as a regulator of cilium length, together with PKD1 (By similarity). The dynamic control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling (By similarity). Functions as a calcium permeable cation channel.

Homo sapiens (taxid: 9606)

>sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 protein OS=Homo sapiens GN=PKD2L1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 32  GQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK 91
           G++ SY   G+Y DL  +       L  L++G W+ R TRVVFIDFS+YNAN+NLFC ++
Sbjct: 260 GRLTSYSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLR 319

May function as a subunit of an ion channel and act as a transducer of calcium-mediated signaling.

Homo sapiens (taxid: 9606)

>sp|Q9NZM6|PK2L2_HUMAN Polycystic kidney disease 2-like 2 protein OS=Homo sapiens GN=PKD2L2 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query: 26  DSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVN 85
           +S ++ G +G Y   G+   LS + ++   +   LR   WITR TRV+FIDFS+YNANVN
Sbjct: 184 NSPWHWGFLGVYRNGGYIFTLSKSKSETKNKFIDLRLNSWITRGTRVIFIDFSLYNANVN 243

Query: 86  LFCFVK 91
           LFC ++
Sbjct: 244 LFCIIR 249

May function as a subunit of a cation channel and play a role in fertilization.

Homo sapiens (taxid: 9606)

>sp|Q9JLG4|PK2L2_MOUSE Polycystic kidney disease 2-like 2 protein OS=Mus musculus GN=Pkd2l2 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query: 27  SDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNL 86
           + ++ G VG Y   G+   LS + ++  A+   LR   WI+R TR VFIDFS+YNANVNL
Sbjct: 185 APWHWGFVGVYRDGGYIVTLSKSKSETKAKFVDLRLNNWISRGTRAVFIDFSLYNANVNL 244

Query: 87  FCFVK 91
           FC ++
Sbjct: 245 FCIIR 249

May function as a subunit of a cation channel and play a role in fertilization.

Mus musculus (taxid: 10090)

>sp|Q9U1S7|PKD2_CAEEL Polycystin-2 OS=Caenorhabditis elegans GN=pkd-2 PE=1 SV=3

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 32  GQVGSYPYSGFYQDLS-ANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV 90
           G + SY   GF Q L  A   +  + +  L+   WI R +R + +DF++YNAN+NLFC V
Sbjct: 230 GTIASYGGGGFVQRLPVAGSTEAQSAIATLKANRWIDRGSRAIIVDFALYNANINLFCVV 289

Query: 91  K 91
           K
Sbjct: 290 K 290

Functions as a calcium permeable cation channel. Required for 2 aspects of male mating behavior: response to hermaphrodite contact and vulva location. Acts in the same pathway as lov-1 and atp-2 in response behavior.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7TN88|PK1L2_MOUSE Polycystic kidney disease protein 1-like 2 OS=Mus musculus GN=Pkd1l2 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 32   GQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV 90
            G++  Y   G+   L  +H      L  L    W+   TR VF++F++YNANVNLFC V
Sbjct: 2097 GKLTLYGGGGYVVPLGTDHQSASRILQYLFDNSWLDALTRAVFVEFTVYNANVNLFCTV 2155

May function as an ion-channel regulator. May function as a G-protein-coupled receptor.

Mus musculus (taxid: 10090)

>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 32   GQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV 90
            G++ +Y   G+   L  NH+     L  L +  W+   T+ +F++F+++NANVNL C V
Sbjct: 1815 GELATYSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAV 1873

May function as an ion-channel regulator (By similarity). May function with PKD2L1 as heteromeric taste channels.

Mus musculus (taxid: 10090)

>sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 20   EGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSM 79
            +G  +W      G++  Y   G+   L  +    +  L  L    W+   TR VF++ ++
Sbjct: 2088 QGYPIW------GKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTV 2141

Query: 80   YNANVNLFCFV 90
            YNANVNLFC V
Sbjct: 2142 YNANVNLFCIV 2152

May function as an ion-channel regulator. May function as a G-protein-coupled receptor.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
344284765	974	PREDICTED: polycystin-2 [Loxodonta afric	0.736	0.068	0.493	7e-13
47214258	857	unnamed protein product [Tetraodon nigro	0.714	0.075	0.507	6e-12
348567286	1007	PREDICTED: polycystin-2-like [Cavia porc	0.736	0.066	0.479	7e-12
410917964	902	PREDICTED: polycystin-2-like [Takifugu r	0.714	0.072	0.478	1e-11
301755566	926	PREDICTED: LOW QUALITY PROTEIN: polycyst	0.736	0.072	0.452	1e-11
355711750	621	polycystic kidney disease 2 [Mustela put	0.736	0.107	0.452	1e-11
223668066	910	polycystin-2 delta7 variant [Mus musculu	0.736	0.073	0.479	2e-11
395834298	1002	PREDICTED: polycystin-2 [Otolemur garnet	0.736	0.066	0.465	2e-11
2558835	966	polycystic kidney disease 2 [Mus musculu	0.736	0.069	0.479	3e-11
164519057	966	polycystin-2 [Mus musculus] gi|341941263	0.736	0.069	0.479	3e-11

>gi|344284765|ref|XP_003414135.1| PREDICTED: polycystin-2 [Loxodonta africana]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GSS W      G   +Y  +G+Y DLS    +  AQ+  LRK GW+ R TR VFIDFS
Sbjct: 379 LNGSSHW------GMTATYSGAGYYLDLSRTREETAAQIASLRKNGWLDRGTRAVFIDFS 432

Query: 79  MYNANVNLFCFVK 91
           +YNAN+NLFC V+
Sbjct: 433 VYNANINLFCVVR 445

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47214258|emb|CAG01935.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 21  GSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMY 80
           GSS W      GQV  Y   G+YQDLS      L QL +L+K  W+ R TR VF+DFS+Y
Sbjct: 316 GSSHW------GQVSKYGGGGYYQDLSPTREGSLVQLQLLKKCLWLDRGTRAVFLDFSVY 369

Query: 81  NANVNLFCFVK 91
           N N+NLFC V+
Sbjct: 370 NGNINLFCIVR 380

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348567286|ref|XP_003469431.1| PREDICTED: polycystin-2-like [Cavia porcellus]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GS+ W      G + +Y  +G+Y DLS    +   QL  LRK  W+ R TR  FIDFS
Sbjct: 412 LNGSTHW------GVIAAYSGAGYYLDLSRTREETAGQLAGLRKNAWLDRGTRAAFIDFS 465

Query: 79  MYNANVNLFCFVK 91
           MYNANVNLFC V+
Sbjct: 466 MYNANVNLFCVVR 478

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410917964|ref|XP_003972456.1| PREDICTED: polycystin-2-like [Takifugu rubripes]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 6/71 (8%)

Query: 21  GSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMY 80
           GSS W      GQV  Y   G+YQDLS    + + +L +LR+  W+ R TR VF+DFS+Y
Sbjct: 318 GSSYW------GQVSKYGGGGYYQDLSRTKEESMTKLQLLREHLWLDRGTRAVFLDFSVY 371

Query: 81  NANVNLFCFVK 91
           N N+NLFC V+
Sbjct: 372 NGNINLFCIVR 382

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301755566|ref|XP_002913648.1| PREDICTED: LOW QUALITY PROTEIN: polycystin-2-like [Ailuropoda melanoleuca]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GSS W      G + +Y  +G+Y DLS    +  AQ+  L+K GW+ R TR  FIDFS
Sbjct: 332 LNGSSHW------GMIATYSGAGYYLDLSRTREETAAQVASLKKNGWLDRGTRATFIDFS 385

Query: 79  MYNANVNLFCFVK 91
           +YNAN+NLFC ++
Sbjct: 386 VYNANINLFCVIR 398

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355711750|gb|AES04114.1| polycystic kidney disease 2 [Mustela putorius furo]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 19 FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
            GSS W      G + +Y  +G+Y DLS    +  AQ+  L+K GW+ R TR  FIDFS
Sbjct: 27 LNGSSHW------GMIATYSGAGYYLDLSRTREETAAQIASLKKNGWLDRGTRATFIDFS 80

Query: 79 MYNANVNLFCFVK 91
          +YNAN+NLFC ++
Sbjct: 81 VYNANINLFCVIR 93

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|223668066|gb|ACN11624.1| polycystin-2 delta7 variant [Mus musculus]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GSS W      G + SY  +G+Y DLS    +  AQL  LR+  W+ R TR  FIDFS
Sbjct: 372 LNGSSHW------GIIASYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAAFIDFS 425

Query: 79  MYNANVNLFCFVK 91
           +YNAN+NLFC V+
Sbjct: 426 VYNANINLFCVVR 438

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395834298|ref|XP_003790144.1| PREDICTED: polycystin-2 [Otolemur garnettii]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GSS W      G +G+Y  +G+Y DLS    +  AQ+  L+K  W+ R TR  FIDFS
Sbjct: 408 LNGSSHW------GIIGTYSGAGYYLDLSRTREETAAQIASLKKNVWLDRGTRATFIDFS 461

Query: 79  MYNANVNLFCFVK 91
           +YNAN+NLFC V+
Sbjct: 462 VYNANINLFCVVR 474

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|2558835|gb|AAC53388.1| polycystic kidney disease 2 [Mus musculus]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GSS W      G + SY  +G+Y DLS    +  AQL  LR+  W+ R TR  FIDFS
Sbjct: 372 LNGSSHW------GIIASYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAAFIDFS 425

Query: 79  MYNANVNLFCFVK 91
           +YNAN+NLFC V+
Sbjct: 426 VYNANINLFCVVR 438

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|164519057|ref|NP_032887.3| polycystin-2 [Mus musculus] gi|341941263|sp|O35245.2|PKD2_MOUSE RecName: Full=Polycystin-2; AltName: Full=Polycystic kidney disease 2 protein homolog

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 19  FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
             GSS W      G + SY  +G+Y DLS    +  AQL  LR+  W+ R TR  FIDFS
Sbjct: 372 LNGSSHW------GIIASYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAAFIDFS 425

Query: 79  MYNANVNLFCFVK 91
           +YNAN+NLFC V+
Sbjct: 426 VYNANINLFCVVR 438

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
ZFIN|ZDB-GENE-040827-4	904	pkd2 "polycystic kidney diseas	0.758	0.076	0.5	2e-12
UNIPROTKB|F1NE51	603	PKD2L2 "Uncharacterized protei	0.714	0.107	0.507	4.8e-12
UNIPROTKB|Q9P0L9	805	PKD2L1 "Polycystic kidney dise	0.659	0.074	0.483	1.4e-11
UNIPROTKB|F1RW49	970	PKD2 "Uncharacterized protein"	0.714	0.067	0.478	1.6e-11
MGI|MGI:1099818	966	Pkd2 "polycystic kidney diseas	0.714	0.067	0.492	2e-11
ZFIN|ZDB-GENE-030616-558	805	pkd2l1 "polycystic kidney dise	0.725	0.081	0.458	2.6e-11
RGD|1310272	265	Pkd2l2 "polycystic kidney dise	0.692	0.237	0.492	2.7e-11
UNIPROTKB|Q2TBW4	600	PKD2L2 "Uncharacterized protei	0.725	0.11	0.484	2.7e-11
UNIPROTKB|F1PGE3	861	PKD2 "Uncharacterized protein"	0.714	0.075	0.450	2.8e-11
RGD|1559992	966	Pkd2 "polycystic kidney diseas	0.714	0.067	0.478	4.2e-11

ZFIN|ZDB-GENE-040827-4 pkd2 "polycystic kidney disease 2" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 35/70 (50%), Positives = 45/70 (64%)

Query:    22 SSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYN 81
             SS+ +S Y+ GQV +Y   G+YQDLS        QL  L+   W+ R TR VF+DFS+YN
Sbjct:   308 SSLGESSYW-GQVSTYGGGGYYQDLSRTREKSANQLQELKNNLWLDRGTRAVFLDFSIYN 366

Query:    82 ANVNLFCFVK 91
              NVNLFC V+
Sbjct:   367 GNVNLFCIVR 376

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0005929 "cilium" evidence=IDA

GO:0048793 "pronephros development" evidence=IGI;IMP

GO:0005783 "endoplasmic reticulum" evidence=ISS;IDA

GO:0001947 "heart looping" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IGI;IMP

GO:0003146 "heart jogging" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0072019 "proximal convoluted tubule development" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0072114 "pronephros morphogenesis" evidence=IMP

GO:0032965 "regulation of collagen biosynthetic process" evidence=IMP

UNIPROTKB|F1NE51 PKD2L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 33/65 (50%), Positives = 41/65 (63%)

Query:    27 SDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNL 86
             S +Y G VG Y   GF   L  +  + + +L  LRK GWIT  TR VFIDFS +NAN+NL
Sbjct:   167 SPWYWGSVGFYRSGGFIVTLPRSKQESMEKLASLRKNGWITHGTRAVFIDFSTFNANINL 226

Query:    87 FCFVK 91
             FC V+
Sbjct:   227 FCIVR 231

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9P0L9 PKD2L1 "Polycystic kidney disease 2-like 1 protein" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query:    32 GQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK 91
             G++ SY   G+Y DL  +       L  L++G W+ R TRVVFIDFS+YNAN+NLFC ++
Sbjct:   260 GRLTSYSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLR 319

GO:0008092 "cytoskeletal protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0015269 "calcium-activated potassium channel activity" evidence=IDA

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

GO:0005272 "sodium channel activity" evidence=IDA

GO:0035725 "sodium ion transmembrane transport" evidence=IDA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

GO:0001581 "detection of chemical stimulus involved in sensory perception of sour taste" evidence=ISS

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0033040 "sour taste receptor activity" evidence=ISS

GO:0005227 "calcium activated cation channel activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0071468 "cellular response to acidity" evidence=ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IMP

GO:0005261 "cation channel activity" evidence=IDA

GO:0051393 "alpha-actinin binding" evidence=IPI

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

UNIPROTKB|F1RW49 PKD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query:    21 GSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMY 80
             GSS W      G + +Y  +G+Y DLS    +  AQL  LRK  W+ R TR +FIDFS+Y
Sbjct:   378 GSSHW------GMLTTYSGAGYYLDLSRTREETAAQLAHLRKHAWLDRGTRAMFIDFSVY 431

Query:    81 NANVNLFCFVK 91
             NAN+NLFC ++
Sbjct:   432 NANINLFCVIR 442

GO:0048763 "calcium-induced calcium release activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0045180 "basal cortex" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0042994 "cytoplasmic sequestering of transcription factor" evidence=IEA

GO:0042805 "actinin binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0035904 "aorta development" evidence=IEA

GO:0035502 "metanephric part of ureteric bud development" evidence=IEA

GO:0031941 "filamentous actin" evidence=IEA

GO:0031659 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S" evidence=IEA

GO:0031587 "positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity" evidence=IEA

GO:0031513 "nonmotile primary cilium" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0030814 "regulation of cAMP metabolic process" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0009925 "basal plasma membrane" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007259 "JAK-STAT cascade" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0003127 "detection of nodal flow" evidence=IEA

GO:0002133 "polycystin complex" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=IEA

GO:0090279 "regulation of calcium ion import" evidence=IEA

GO:0072686 "mitotic spindle" evidence=IEA

GO:0072284 "metanephric S-shaped body morphogenesis" evidence=IEA

GO:0072235 "metanephric distal tubule development" evidence=IEA

GO:0072219 "metanephric cortical collecting duct development" evidence=IEA

GO:0072218 "metanephric ascending thin limb development" evidence=IEA

GO:0072214 "metanephric cortex development" evidence=IEA

GO:0072208 "metanephric smooth muscle tissue development" evidence=IEA

GO:0072177 "mesonephric duct development" evidence=IEA

GO:0072075 "metanephric mesenchyme development" evidence=IEA

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

GO:0071498 "cellular response to fluid shear stress" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IEA

GO:0071464 "cellular response to hydrostatic pressure" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0061441 "renal artery morphogenesis" evidence=IEA

GO:0061371 "determination of heart left/right asymmetry" evidence=IEA

GO:0061333 "renal tubule morphogenesis" evidence=IEA

GO:0060674 "placenta blood vessel development" evidence=IEA

GO:0060315 "negative regulation of ryanodine-sensitive calcium-release channel activity" evidence=IEA

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0050982 "detection of mechanical stimulus" evidence=IEA

MGI|MGI:1099818 Pkd2 "polycystic kidney disease 2" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 35/71 (49%), Positives = 44/71 (61%)

Query:    21 GSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMY 80
             GSS W      G + SY  +G+Y DLS    +  AQL  LR+  W+ R TR  FIDFS+Y
Sbjct:   374 GSSHW------GIIASYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAAFIDFSVY 427

Query:    81 NANVNLFCFVK 91
             NAN+NLFC V+
Sbjct:   428 NANINLFCVVR 438

GO:0001822 "kidney development" evidence=IGI;IMP

GO:0001889 "liver development" evidence=IGI

GO:0001892 "embryonic placenta development" evidence=IMP

GO:0001947 "heart looping" evidence=ISO

GO:0002133 "polycystin complex" evidence=IDA

GO:0003127 "detection of nodal flow" evidence=IMP

GO:0005102 "receptor binding" evidence=ISO;IPI

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=ISO

GO:0005245 "voltage-gated calcium channel activity" evidence=ISO

GO:0005248 "voltage-gated sodium channel activity" evidence=ISO

GO:0005262 "calcium channel activity" evidence=IDA;TAS

GO:0005267 "potassium channel activity" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA;IMP;TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005929 "cilium" evidence=IDA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO;IMP

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0007050 "cell cycle arrest" evidence=IDA

GO:0007259 "JAK-STAT cascade" evidence=IDA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0009925 "basal plasma membrane" evidence=ISO

GO:0010628 "positive regulation of gene expression" evidence=IMP

GO:0015267 "channel activity" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022843 "voltage-gated cation channel activity" evidence=ISO

GO:0030027 "lamellipodium" evidence=ISO

GO:0030814 "regulation of cAMP metabolic process" evidence=IMP

GO:0031512 "motile primary cilium" evidence=IDA

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0031587 "positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity" evidence=ISO

GO:0031659 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S" evidence=ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0042994 "cytoplasmic sequestering of transcription factor" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043398 "HLH domain binding" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0044441 "cilium part" evidence=IMP

GO:0045180 "basal cortex" evidence=ISO;IDA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=ISO;IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048763 "calcium-induced calcium release activity" evidence=ISO

GO:0050982 "detection of mechanical stimulus" evidence=IMP

GO:0051117 "ATPase binding" evidence=IPI

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=ISO;IMP

GO:0055085 "transmembrane transport" evidence=IMP

GO:0060315 "negative regulation of ryanodine-sensitive calcium-release channel activity" evidence=IDA

GO:0060674 "placenta blood vessel development" evidence=IMP

GO:0061333 "renal tubule morphogenesis" evidence=IMP

GO:0070588 "calcium ion transmembrane transport" evidence=ISO;TAS

GO:0071158 "positive regulation of cell cycle arrest" evidence=ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISO

GO:0071464 "cellular response to hydrostatic pressure" evidence=ISO

GO:0071470 "cellular response to osmotic stress" evidence=ISO

GO:0071498 "cellular response to fluid shear stress" evidence=ISO;IMP

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

GO:0072001 "renal system development" evidence=IGI

GO:0072686 "mitotic spindle" evidence=ISO;IDA

GO:0090279 "regulation of calcium ion import" evidence=ISO

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=ISO

ZFIN|ZDB-GENE-030616-558 pkd2l1 "polycystic kidney disease 2-like 1" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 33/72 (45%), Positives = 48/72 (66%)

Query:    20 EGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSM 79
             +GSS W      G + +Y  +GFYQDL+   ++  A L+ LR+  W+ R TRV+FIDF+ 
Sbjct:   261 KGSSHW------GLLTTYSGAGFYQDLTTTRDESAALLEDLRENLWLDRGTRVLFIDFTA 314

Query:    80 YNANVNLFCFVK 91
             YNAN+NLFC ++
Sbjct:   315 YNANINLFCVIR 326

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1310272 Pkd2l2 "polycystic kidney disease 2-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 31/63 (49%), Positives = 42/63 (66%)

Query:    29 YYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFC 88
             ++ G VG Y   G+   LS + ++  A+L  LR+  WI R TR VFIDFS+YNANVNLFC
Sbjct:   187 WHWGFVGVYRDGGYMVTLSKSKSETKAKLADLRQNNWIGRGTRAVFIDFSLYNANVNLFC 246

Query:    89 FVK 91
              ++
Sbjct:   247 IIR 249

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q2TBW4 PKD2L2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 32/66 (48%), Positives = 44/66 (66%)

Query:    26 DSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVN 85
             +S ++ G VG Y   G+   LS + ++ L +   LR   WITR TRV+FIDFS+YNANVN
Sbjct:   158 NSPWHWGFVGVYQNGGYIFTLSKSKSETLNKFINLRMNSWITRGTRVIFIDFSVYNANVN 217

Query:    86 LFCFVK 91
             LFC ++
Sbjct:   218 LFCIIR 223

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PGE3 PKD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 32/71 (45%), Positives = 44/71 (61%)

Query:    21 GSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMY 80
             GSS W      G + +Y  +G+Y DLS    +  AQ+  L+K  W+ R TR  FIDFS+Y
Sbjct:   269 GSSHW------GMIATYSGAGYYLDLSRTREETAAQVASLKKNVWLDRGTRATFIDFSVY 322

Query:    81 NANVNLFCFVK 91
             NAN+NLFC ++
Sbjct:   323 NANINLFCVIR 333

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|1559992 Pkd2 "polycystic kidney disease 2 (autosomal dominant)" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 34/71 (47%), Positives = 44/71 (61%)

Query:    21 GSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMY 80
             GSS W      G + +Y  +G+Y DLS    +  AQL  LR+  W+ R TR  FIDFS+Y
Sbjct:   374 GSSHW------GIIATYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAAFIDFSVY 427

Query:    81 NANVNLFCFVK 91
             NAN+NLFC V+
Sbjct:   428 NANINLFCVVR 438

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA;ISO

GO:0001822 "kidney development" evidence=ISO

GO:0001889 "liver development" evidence=IEA;ISO

GO:0001892 "embryonic placenta development" evidence=IEA;ISO

GO:0001947 "heart looping" evidence=ISO

GO:0002133 "polycystin complex" evidence=IEA;ISO

GO:0003127 "detection of nodal flow" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005244 "voltage-gated ion channel activity" evidence=ISO

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA;ISO

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA;ISO

GO:0005262 "calcium channel activity" evidence=ISO

GO:0005267 "potassium channel activity" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=IEA;ISO

GO:0005911 "cell-cell junction" evidence=IEA;ISO

GO:0005929 "cilium" evidence=ISO

GO:0005932 "microtubule basal body" evidence=IEA;ISO

GO:0006816 "calcium ion transport" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0007050 "cell cycle arrest" evidence=IEA;ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IMP

GO:0007259 "JAK-STAT cascade" evidence=IEA;ISO

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0007507 "heart development" evidence=IEA;ISO

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0009925 "basal plasma membrane" evidence=IEA;ISO

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0015267 "channel activity" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0021510 "spinal cord development" evidence=IEA;ISO

GO:0021915 "neural tube development" evidence=IEA;ISO

GO:0022843 "voltage-gated cation channel activity" evidence=ISO

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030814 "regulation of cAMP metabolic process" evidence=IEA;ISO

GO:0031512 "motile primary cilium" evidence=IEA;ISO

GO:0031513 "nonmotile primary cilium" evidence=IEA;ISO

GO:0031587 "positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity" evidence=IEA;ISO

GO:0031659 "positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S" evidence=IEA;ISO

GO:0031941 "filamentous actin" evidence=IEA;ISO

GO:0035502 "metanephric part of ureteric bud development" evidence=IEA;ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0035904 "aorta development" evidence=IEA;ISO

GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0042994 "cytoplasmic sequestering of transcription factor" evidence=IEA;ISO

GO:0043398 "HLH domain binding" evidence=IEA;ISO

GO:0044325 "ion channel binding" evidence=IEA;ISO

GO:0044441 "cilium part" evidence=IEA;ISO

GO:0045180 "basal cortex" evidence=IEA;ISO

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048763 "calcium-induced calcium release activity" evidence=IEA;ISO

GO:0050982 "detection of mechanical stimulus" evidence=IEA;ISO

GO:0051117 "ATPase binding" evidence=IEA;ISO

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=IEA;ISO

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0051393 "alpha-actinin binding" evidence=IPI

GO:0055085 "transmembrane transport" evidence=ISO

GO:0060315 "negative regulation of ryanodine-sensitive calcium-release channel activity" evidence=IEA;ISO

GO:0060674 "placenta blood vessel development" evidence=IEA;ISO

GO:0061333 "renal tubule morphogenesis" evidence=IEA;ISO

GO:0061371 "determination of heart left/right asymmetry" evidence=IEA

GO:0061441 "renal artery morphogenesis" evidence=IEA;ISO

GO:0070588 "calcium ion transmembrane transport" evidence=ISO

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA;ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0071464 "cellular response to hydrostatic pressure" evidence=IEA;ISO

GO:0071470 "cellular response to osmotic stress" evidence=IEA;ISO

GO:0071498 "cellular response to fluid shear stress" evidence=IEA;ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

GO:0072001 "renal system development" evidence=ISO

GO:0072075 "metanephric mesenchyme development" evidence=IEA;ISO

GO:0072164 "mesonephric tubule development" evidence=ISO

GO:0072177 "mesonephric duct development" evidence=IEA;ISO

GO:0072208 "metanephric smooth muscle tissue development" evidence=IEA;ISO

GO:0072214 "metanephric cortex development" evidence=IEA;ISO

GO:0072218 "metanephric ascending thin limb development" evidence=IEA;ISO

GO:0072219 "metanephric cortical collecting duct development" evidence=IEA;ISO

GO:0072235 "metanephric distal tubule development" evidence=IEA;ISO

GO:0072284 "metanephric S-shaped body morphogenesis" evidence=IEA;ISO

GO:0072686 "mitotic spindle" evidence=IEA;ISO

GO:0090279 "regulation of calcium ion import" evidence=IEA;ISO

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=IEA;ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
pfam08016	423	pfam08016, PKD_channel, Polycystin cation channel	1e-13

>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 25  WDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANV 84
               ++ G + SYP  G+   L  +  + L +L  L+   W+ R TR VF++F++YNAN 
Sbjct: 109 LMGAWHWGHLASYPSGGYVVLLPLSREESLKRLAYLQDHNWLDRRTRAVFVEFTLYNANT 168

Query: 85  NLFCFVK 91
           NLFC V 
Sbjct: 169 NLFCVVT 175

This family contains the cation channel region of PKD1 and PKD2 proteins. Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	99.9
KOG3599|consensus	798		99.87
PLN03223	1634	Polycystin cation channel protein; Provisional	99.69
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	80.82

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=99.90  E-value=4.8e-24  Score=167.58  Aligned_cols=64  Identities=41%  Similarity=0.758  Sum_probs=61.1

Q ss_pred             CCccceeeecCCCCeEEECCCCHHHHHHHHHHhhhCCcccCCCcEEEEEeeeeecCCceEEEeC
Q psy14514         28 DYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK   91 (91)
Q Consensus        28 ~~~~G~~~~Y~gGGYv~~L~~~~~~a~~~L~~L~~~~WiD~~TRAvfvEFtlYN~n~nLF~vVk   91 (91)
                      .|+.|++++|+||||+++|++++++|.++|++||+++|||++||||+|||++||||+||||+|+
T Consensus       114 ~~~~G~~~~Y~~gGY~~~L~~~~~~a~~~l~~L~~~~WiD~~Trav~vef~~YN~~~nlf~~v~  177 (425)
T PF08016_consen  114 YPYWGQFGTYGGGGYVVDLGRNKDEARSILQYLQQNNWIDRSTRAVFVEFTLYNPNTNLFSVVT  177 (425)
T ss_pred             CceeeeeeeeCCCcEEEECCCCHHHHHHHHHHHHhCcCcccCCceEEEEEEEEcCCCCeeEEEE
Confidence            3455999999999999999999999999999999999999999999999999999999999985

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG3599|consensus

Probab=99.87  E-value=1.9e-22  Score=171.64  Aligned_cols=78  Identities=37%  Similarity=0.666  Sum_probs=71.0

Q ss_pred             hhhcCccCCCC----------CCCCCccccCCccceeeecCCCCeEEECCCCHHHHHHHHHHhhhCCcccCCCcEEEEEe
Q psy14514          8 LKGIYEENLPV----------FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDF   77 (91)
Q Consensus         8 ~~~i~~~~~~~----------~~~~~~w~~~~~~G~~~~Y~gGGYv~~L~~~~~~a~~~L~~L~~~~WiD~~TRAvfvEF   77 (91)
                      .|++|.++.++          +.+.+.|      |.+++|+||||+++|+.+++++.+++++|++++|||++||||||||
T Consensus       345 ~~~~~~~~~~~e~~~~~~~~~L~~~~~~------g~l~~Y~~gGY~~~l~~sr~es~~~i~~L~~~~WlD~~TrAvfidf  418 (798)
T KOG3599|consen  345 PWSPYGPWAGDEFTYSTSKELLLGLEHW------GLLASYGGGGYVVLLSLSRTESLKAISYLRENNWLDRGTRAVFIDF  418 (798)
T ss_pred             CccccCCCcccccccccccccccccccc------cceeEecCCCEEEEecCchHhHHHHHHHHHHhccccCCCcEEEEec
Confidence            47777777766          5555566      9999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCceEEEeC
Q psy14514         78 SMYNANVNLFCFVK   91 (91)
Q Consensus        78 tlYN~n~nLF~vVk   91 (91)
                      |+||||+||||+|+
T Consensus       419 tlYNa~inlF~~v~  432 (798)
T KOG3599|consen  419 TLYNADINLFCVVT  432 (798)
T ss_pred             cccCCCCCeeEEEE
Confidence            99999999999985

>PLN03223 Polycystin cation channel protein; Provisional

Probab=99.69  E-value=3.7e-17  Score=144.62  Aligned_cols=55  Identities=25%  Similarity=0.336  Sum_probs=52.4

Q ss_pred             cCCC-CeEEECCCCHHHHHHHHHHhhhCCcccC-CCcEEEEEeeeeecCCceEEEeC
Q psy14514         37 YPYS-GFYQDLSANHNDFLAQLDMLRKGGWITR-ATRVVFIDFSMYNANVNLFCFVK   91 (91)
Q Consensus        37 Y~gG-GYv~~L~~~~~~a~~~L~~L~~~~WiD~-~TRAvfvEFtlYN~n~nLF~vVk   91 (91)
                      |++| ||+++|+.++++|.++|++|+++.|||+ +||||||||++||||+||||+|+
T Consensus      1086 y~DGfgyv~DL~lSa~eA~~~L~~LKdnlWIDr~~TRAVFVEFTVYNANVNLFSvVt 1142 (1634)
T PLN03223       1086 YADGFPYFFDINLSAAEAQTWLDYMIYGLMIDDVKTRKVTAQVVVYNAELGYFGNVM 1142 (1634)
T ss_pred             CCCCceEEEECCCCHHHHHHHHHHHHhCCCcccccceeEEEEEEEEcCCCCeEEEEE
Confidence            5555 9999999999999999999999999999 99999999999999999999985

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=80.82  E-value=3.1  Score=22.40  Aligned_cols=29  Identities=24%  Similarity=0.316  Sum_probs=23.7

Q ss_pred             CCCCHHHHHHHHHHhhhCCcccCCCcEEE
Q psy14514         46 LSANHNDFLAQLDMLRKGGWITRATRVVF   74 (91)
Q Consensus        46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvf   74 (91)
                      ++-++..+.+.|+.|++.+||++..+.+.
T Consensus        18 l~~s~~tv~~~l~~L~~~g~l~~~~~~~~   46 (48)
T smart00419       18 LGLTRETVSRTLKRLEKEGLISREGGRIV   46 (48)
T ss_pred             HCCCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            56677889999999999999998765443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00