Psyllid ID: psy14515

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------
MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQDISTEGAHSSPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIASKSV
cccHHHHHHHHHHccccccccccccccccHHHHHccccHHHHHHHHcccccccHHHHHHHccccccEEccccHHHHHHHHcccccccccccccccccccHHHHHHHHHcHHHHHHHHHHccccccEEEEEccccccccccccccccccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccHHHHHHHHHccccHHHHccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHcccHHHEEEEccccccHHHHHHHccHHHHHHHHccccccHHHHHHHHHHccccEEEcccccEEEEEcccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccEEEEEccccEEEEEEEEccccccccccccccHcccccHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHccccccccccEEccccHHHHHHHHcccEEEEEEcccccccccccccEEccHHccccccccccHHcccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHHHHHccccccccccccHHcccccccccccccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHccc
mlkhvnikdpckelglvqrckfiqpreATQEEILKKHTIEQIELLattegstdvDALEQLsshydaiyihpssyklsllsagSTIELRRnqkrngshsssYKLSllsagstieLVDNICRgeikngmavirppghhamkseycgycffnNVALAAQHALDNTSVSRVLIVDWdvhhgqatqqmfyndnrvvyFSIHryehgtfwpnlreseydhigegigkgynfniplnkthmkdadYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRAllddpcpnfetlgtpserpkiwKEGKQCLVLALKhivpqnsilsnLDRASRRFKLLTfvhlpaentdvpllfllqipgcyphrtkskgmsdpEYIAAFQQVILPIAYQFNPELVLVSAgydacvndplggckvspeaYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKallgdplpllesdldinssaVTSIKVIIIINNNNSVYLYcshrtenpfAFLSFLSLKNITETILNCIyehrpywncykfqdistegahssplhipraefkyegnpkqeiyatrdcypiqsqEFVRLCDERLDsliasksv
mlkhvnikdpckelglvqrcKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSAGSTIELRRnqkrngshsssyKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFEtlgtpserpkiWKEGKQCLVLALKHIvpqnsilsnlDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQDISTEGAHSSPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIASKSV
MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSAGSTIELRRNQKRNGshsssyklsllsagsTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKViiiinnnnSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQDISTEGAHSSPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIASKSV
******IKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSA*********************LSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQDISTEGA****LHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLD********
*LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEG*********LSSHYDAIYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLL****DINSSAVTSIKVIIIINNNNSVYLYCSHRT***************TETILNCIYEHRPYWNCYKFQD***********************PKQEIYATRDCYPIQSQEFVRLCDERLDSLIASKS*
MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSAGSTIELRR***********YKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQDISTEGAHSSPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIASKSV
MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKN**ETILNCIY*****************************************YATRDCYPIQSQEFVRLCDERLDSLIASK**
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MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQDISTEGAHSSPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIASKSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query586 2.2.26 [Sep-21-2011]
Q9UBN7 1215 Histone deacetylase 6 OS= yes N/A 0.430 0.207 0.390 2e-59
Q9Z2V5 1149 Histone deacetylase 6 OS= yes N/A 0.416 0.212 0.385 1e-58
Q969S8669 Histone deacetylase 10 OS no N/A 0.412 0.361 0.362 3e-55
Q6P3E7666 Histone deacetylase 10 OS no N/A 0.430 0.378 0.351 2e-54
Q569C4588 Histone deacetylase 10 OS no N/A 0.370 0.369 0.412 5e-49
Q8LRK8682 Histone deacetylase 18 OS yes N/A 0.361 0.310 0.342 8e-44
Q8RX28660 Histone deacetylase 5 OS= no N/A 0.361 0.321 0.347 5e-43
Q20296 955 Histone deacetylase 6 OS= no N/A 0.295 0.181 0.477 1e-42
P53973706 Histone deacetylase HDA1 yes N/A 0.346 0.287 0.377 3e-41
Q6NZM91076 Histone deacetylase 4 OS= no N/A 0.382 0.208 0.379 1e-39
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2 Back     alignment and function desciption
 Score =  231 bits (588), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 174/330 (52%), Gaps = 78/330 (23%)

Query: 7   IKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDA 66
           IK+   + GL+ RC   Q R A +EE++  H++E I+L+ TT+   + + L  L+  YD+
Sbjct: 115 IKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGE-LRVLADTYDS 173

Query: 67  IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG 126
           +Y+HP+SY  + L++                           GS + LVD +   EI+NG
Sbjct: 174 VYLHPNSYSCACLAS---------------------------GSVLRLVDAVLGAEIRNG 206

Query: 127 MAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYN 186
           MA+IRPPGHHA  S   GYC FN+VA+AA++A     + RVLIVDWDVHHGQ TQ  F  
Sbjct: 207 MAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVHHGQGTQFTFDQ 266

Query: 187 DNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQV 246
           D  V+YFSIHRYE G FWP+L+ S +   G G G+GY  N+P N+  M+DADY+A F  V
Sbjct: 267 DPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFLHV 326

Query: 247 LLP----------MVA----------------------------------------EGGY 256
           LLP          +VA                                        EGGY
Sbjct: 327 LLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKLILSLEGGY 386

Query: 257 CLKSLAEGAALTLRALLDDPCPNFETLGTP 286
            L++LAEG + +L  LL DPCP  E+ G P
Sbjct: 387 NLRALAEGVSASLHTLLGDPCPMLESPGAP 416
In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3 Back     alignment and function description
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1 Back     alignment and function description
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2 Back     alignment and function description
>sp|Q569C4|HDA10_RAT Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1 Back     alignment and function description
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1 Back     alignment and function description
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1 Back     alignment and function description
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2 Back     alignment and function description
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HDA1 PE=1 SV=1 Back     alignment and function description
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
322785610 1170 hypothetical protein SINV_07643 [Solenop 0.426 0.213 0.547 2e-97
350400444 1173 PREDICTED: histone deacetylase 6-like [B 0.436 0.218 0.528 1e-96
340718184 1160 PREDICTED: histone deacetylase 6-like [B 0.426 0.215 0.538 5e-96
321473004 1022 putative histone deacetylase HDAC6 prote 0.441 0.253 0.526 9e-95
170052821 1108 histone deacetylase [Culex quinquefascia 0.441 0.233 0.552 3e-94
328781356 1129 PREDICTED: LOW QUALITY PROTEIN: histone 0.426 0.221 0.529 7e-94
383864231 1169 PREDICTED: histone deacetylase 6-like [M 0.426 0.213 0.532 8e-94
157114211 1059 histone deacetylase [Aedes aegypti] gi|1 0.441 0.244 0.498 3e-90
321474949 721 hypothetical protein DAPPUDRAFT_98501 [D 0.441 0.359 0.498 1e-89
307212499 1136 Histone deacetylase 6 [Harpegnathos salt 0.426 0.220 0.521 1e-87
>gi|322785610|gb|EFZ12265.1| hypothetical protein SINV_07643 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/327 (54%), Positives = 215/327 (65%), Gaps = 77/327 (23%)

Query: 11  CKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIH 70
           C+ELGLVQRC+ I+PR A + E+L KH+ +QI++L  T+GSTD + LE LSS YD +YIH
Sbjct: 137 CEELGLVQRCRLIEPRLAAESELLSKHSQKQIDILKATDGSTDFENLELLSSKYDCVYIH 196

Query: 71  PSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVI 130
           PS+Y+L                           SLL+ GST  LV+++C+GEI+NGMA+I
Sbjct: 197 PSTYRL---------------------------SLLAVGSTTNLVESVCKGEIQNGMAII 229

Query: 131 RPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRV 190
           RPPGHHAMKSEYCGYCFFNNVALAA+ AL +   +R+LIVDWDVHHGQATQQMFYND RV
Sbjct: 230 RPPGHHAMKSEYCGYCFFNNVALAAEKALSSGLANRILIVDWDVHHGQATQQMFYNDPRV 289

Query: 191 VYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPM 250
           VYFSIHRYEHG FWPNLRES++ ++GE +G+GYNFNIPLNKT M +ADY+A+F QVLLPM
Sbjct: 290 VYFSIHRYEHGEFWPNLRESDFHYVGEDLGEGYNFNIPLNKTGMTNADYIAIFQQVLLPM 349

Query: 251 --------------------------------------------------VAEGGYCLKS 260
                                                             + EGGYCLKS
Sbjct: 350 AYEFQPDLIIVSAGYDAALGCPEGEMLITPACYSHLLSSLLSLANGKVAVILEGGYCLKS 409

Query: 261 LAEGAALTLRALLDDPCPNFETLGTPS 287
           LAEGAALTLR LL DPCP  +TL  PS
Sbjct: 410 LAEGAALTLRTLLGDPCPILQTLDLPS 436

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350400444|ref|XP_003485837.1| PREDICTED: histone deacetylase 6-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340718184|ref|XP_003397551.1| PREDICTED: histone deacetylase 6-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|321473004|gb|EFX83972.1| putative histone deacetylase HDAC6 protein [Daphnia pulex] Back     alignment and taxonomy information
>gi|170052821|ref|XP_001862395.1| histone deacetylase [Culex quinquefasciatus] gi|167873617|gb|EDS37000.1| histone deacetylase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328781356|ref|XP_001121726.2| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 6 [Apis mellifera] Back     alignment and taxonomy information
>gi|383864231|ref|XP_003707583.1| PREDICTED: histone deacetylase 6-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|157114211|ref|XP_001657988.1| histone deacetylase [Aedes aegypti] gi|108883594|gb|EAT47819.1| AAEL001069-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|321474949|gb|EFX85913.1| hypothetical protein DAPPUDRAFT_98501 [Daphnia pulex] Back     alignment and taxonomy information
>gi|307212499|gb|EFN88230.1| Histone deacetylase 6 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
FB|FBgn0026428 1138 HDAC6 "HDAC6" [Drosophila mela 0.244 0.125 0.678 1.2e-125
UNIPROTKB|F1LSE3 1155 Hdac6 "Protein Hdac6" [Rattus 0.242 0.122 0.556 3.4e-95
UNIPROTKB|F1PN11 1157 HDAC6 "Uncharacterized protein 0.290 0.146 0.511 3.4e-92
UNIPROTKB|Q9UBN7 1215 HDAC6 "Histone deacetylase 6" 0.290 0.139 0.511 4.8e-91
UNIPROTKB|B4DZH6 1229 HDAC6 "Histone deacetylase 6" 0.290 0.138 0.511 5.2e-91
MGI|MGI:1333752 1149 Hdac6 "histone deacetylase 6" 0.290 0.147 0.517 5.4e-89
UNIPROTKB|I3LEZ7 1130 HDAC6 "Uncharacterized protein 0.290 0.150 0.517 1e-87
UNIPROTKB|F1MQP3 1128 HDAC6 "Uncharacterized protein 0.290 0.150 0.505 1.7e-87
ZFIN|ZDB-GENE-030131-3232 1081 hdac6 "histone deacetylase 6" 0.274 0.148 0.472 5.5e-85
UNIPROTKB|E2RSA8668 HDAC10 "Uncharacterized protei 0.242 0.212 0.528 1.4e-82
FB|FBgn0026428 HDAC6 "HDAC6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 558 (201.5 bits), Expect = 1.2e-125, Sum P(5) = 1.2e-125
 Identities = 97/143 (67%), Positives = 118/143 (82%)

Query:   111 TIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIV 170
             TIELVD++  G+ +NGMA+IRPPGHHAMK+EY GYCFFNNVALA QHALD   + R+LI+
Sbjct:   222 TIELVDHLVAGKAQNGMAIIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILII 281

Query:   171 DWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN 230
             D+DVHHGQ TQ+ FYND RVVYFSIHR+EHG+FWP+L ES+Y  IG G G GYNFN+PLN
Sbjct:   282 DYDVHHGQGTQRFFYNDPRVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLN 341

Query:   231 KTHMKDADYMAVFHQVLLPMVAE 253
              T M + DY+A+F Q+LLP+  E
Sbjct:   342 ATGMTNGDYLAIFQQLLLPVALE 364
GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;NAS
GO:0016575 "histone deacetylation" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IDA
GO:0022904 "respiratory electron transport chain" evidence=IDA
UNIPROTKB|F1LSE3 Hdac6 "Protein Hdac6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PN11 HDAC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBN7 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DZH6 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1333752 Hdac6 "histone deacetylase 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LEZ7 HDAC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQP3 HDAC6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3232 hdac6 "histone deacetylase 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSA8 HDAC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.98LOW CONFIDENCE prediction!
3rd Layer3.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 1e-113
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-96
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 5e-88
cd11683337 cd11683, HDAC10, Histone deacetylase 10 5e-83
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 5e-70
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 2e-65
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 1e-63
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 4e-60
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 1e-56
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 2e-53
cd10007420 cd10007, HDAC5, Histone deacetylase 5 4e-48
cd10006409 cd10006, HDAC4, Histone deacetylase 4 2e-47
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 5e-45
cd10009379 cd10009, HDAC9, Histone deacetylase 9 4e-43
cd10008378 cd10008, HDAC7, Histone deacetylase 7 6e-43
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 2e-42
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 3e-41
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 3e-40
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 1e-39
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 9e-39
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 8e-37
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 4e-36
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 2e-35
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 8e-34
cd11683337 cd11683, HDAC10, Histone deacetylase 10 1e-31
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 9e-30
cd10008378 cd10008, HDAC7, Histone deacetylase 7 4e-27
cd10006409 cd10006, HDAC4, Histone deacetylase 4 5e-25
cd10009379 cd10009, HDAC9, Histone deacetylase 9 4e-24
cd10007420 cd10007, HDAC5, Histone deacetylase 5 5e-23
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 2e-22
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 7e-21
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-19
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 2e-19
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 5e-19
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 1e-18
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 4e-18
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 4e-17
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 2e-16
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 4e-16
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 4e-15
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 2e-14
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 4e-14
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 1e-13
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 1e-13
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 7e-12
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 2e-11
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 3e-08
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 2e-07
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 6e-05
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 1e-04
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 2e-04
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 4e-04
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 7e-04
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 8e-04
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 0.001
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information 
 Score =  341 bits (877), Expect = e-113
 Identities = 140/323 (43%), Positives = 186/323 (57%), Gaps = 78/323 (24%)

Query: 7   IKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDA 66
           I +   + GL++RC  I  REA ++EIL  H+ E I+L+ +TE     + LE L S YD+
Sbjct: 17  ILERLTQDGLLERCVKIPAREAEEDEILLVHSQEYIDLVKSTETMEK-EELESLCSGYDS 75

Query: 67  IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG 126
           +Y+ PS+Y+ + L+AGSTIEL                           V  +  G+I+NG
Sbjct: 76  VYLCPSTYEAARLAAGSTIEL---------------------------VKAVMAGKIQNG 108

Query: 127 MAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYN 186
            A+IRPPGHHAM++E  GYC FNNVA+AA++A++   + R+LIVDWDVHHGQ TQQ FY 
Sbjct: 109 FALIRPPGHHAMRNEANGYCIFNNVAIAAKYAIEKLGLKRILIVDWDVHHGQGTQQGFYE 168

Query: 187 DNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQV 246
           D RV+YFSIHRYEHG FWP+L ES+YD+IG G G G+N N+PLN+T + DADY+A+FH +
Sbjct: 169 DPRVLYFSIHRYEHGRFWPHLFESDYDYIGVGHGYGFNVNVPLNQTGLGDADYLAIFHHI 228

Query: 247 LLPM--------------------------------------------------VAEGGY 256
           LLP+                                                  V EGGY
Sbjct: 229 LLPLALEFQPELVLVSAGFDASIGDPEGEMAVTPAGYAHLTRLLMGLAGGKLLLVLEGGY 288

Query: 257 CLKSLAEGAALTLRALLDDPCPN 279
            L+SLAE  ++TLR LL DP P 
Sbjct: 289 LLESLAESVSMTLRGLLGDPLPP 311

Histone deacetylases 6 and 10 are class IIb Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. HDACs usually act via association with DNA binding proteins to target specific chromatin regions. HDAC6 is the only histone deacetylase with internal duplication of two catalytic domains which appear to function independently of each other, and also has a C-terminal ubiquitin-binding domain. It is located in the cytoplasm and associates with microtubule motor complex, functioning as the tubulin deacetylase and regulating microtubule-dependent cell motility. HDAC10 has an N-terminal deacetylase domain and a C-terminal pseudo-repeat that shares significant similarity with its catalytic domain. It is located in the nucleus and cytoplasm, and is involved in regulation of melanogenesis. It transcriptionally down-regulates thioredoxin-interacting protein (TXNIP), leading to altered reactive oxygen species (ROS) signaling in human gastric cancer cells. Known interaction partners of HDAC6 are alpha tubulin (substrate) and ubiquitin-like modifier FAT10 (also known as Ubiquitin D or UBD) while interaction partners of HDAC10 are Pax3, KAP1, hsc70 and HDAC3 proteins. Length = 336
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 586
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
KOG1343|consensus797 100.0
KOG1342|consensus425 100.0
KOG1343|consensus797 100.0
KOG1344|consensus324 100.0
PTZ00346429 histone deacetylase; Provisional 94.51
PTZ00063436 histone deacetylase; Provisional 91.17
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 89.35
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information 
Probab=100.00  E-value=3.3e-76  Score=613.37  Aligned_cols=286  Identities=43%  Similarity=0.756  Sum_probs=233.8

Q ss_pred             CchHHHHHHHHHHc-CCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCchHH-Hh--hhh--cCCCccccCCChh
Q psy14515          1 MLKHVNIKDPCKEL-GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDA-LE--QLS--SHYDAIYIHPSSY   74 (586)
Q Consensus         1 m~K~~~I~~~L~~~-GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~~~-~~--~l~--~~~d~~~~~~~t~   74 (586)
                      .+|+++|++.|++. +++++      ++|+.++|++|||++||+.|++.+....... ..  ...  ...+++++++.++
T Consensus        16 p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~~~~~~~   89 (311)
T PF00850_consen   16 PERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEFPNILDDGDTPISPGSW   89 (311)
T ss_dssp             THHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHHCCBTSSSSSEBCTTHH
T ss_pred             HHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhcccccccccccccccccccCCCCcceehHHH
Confidence            36999999999997 88765      9999999999999999999998764332211 11  111  1134578888888


Q ss_pred             hhhhhhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHHHH
Q psy14515         75 KLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALA  154 (586)
Q Consensus        75 ~~a~l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvAIA  154 (586)
                      +++++                           ++|++++|+++|++|+.+++||++|||||||.+++++|||+|||||||
T Consensus        90 ~~a~~---------------------------a~g~~l~a~~~v~~g~~~~~~a~~rppgHHA~~~~a~GFC~~Nnvaia  142 (311)
T PF00850_consen   90 EAARL---------------------------AAGGTLEAADAVLSGEIKNAFALVRPPGHHAERDRAMGFCYFNNVAIA  142 (311)
T ss_dssp             HHHHH---------------------------HHHHHHHHHHHHHTTSSSEEEEEESS--TT-BTTBBBTTBSS-HHHHH
T ss_pred             HHHHH---------------------------HHHHHHHHHHhhhcccccceeeecCccccccCcCcCcceeeeccHHHH
Confidence            88777                           999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCC-CCCCCCCccccccCCccceeeecCCCCC
Q psy14515        155 AQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWP-NLRESEYDHIGEGIGKGYNFNIPLNKTH  233 (586)
Q Consensus       155 Ak~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP-~~~~~~~~~~G~g~G~G~nvNVPl~~~g  233 (586)
                      |++|+++++++||+|||||||||||||++||+||+|+|+|||+|+ +.||| +++  ..+++|.|.|+|||+||||+   
T Consensus       143 a~~l~~~~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~-~~~yP~~tG--~~~e~G~~~g~g~~~NipL~---  216 (311)
T PF00850_consen  143 AKYLRKKYGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYP-GNFYPFGTG--FPDEIGEGKGKGYNLNIPLP---  216 (311)
T ss_dssp             HHHHHHTTTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-C-TTSTTTSS----TT--ESGGGTTSEEEEEE----
T ss_pred             HHHHhhccccceEEEEEeCCCCcccchhheeCCCCEEecCccccc-cccCCCcCC--CccccCCCcccceeEecccc---
Confidence            999999889999999999999999999999999999999999985 56999 654  67899999999999999996   


Q ss_pred             CCchHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchh
Q psy14515        234 MKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSI  313 (586)
Q Consensus       234 ~~D~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i  313 (586)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (311)
T PF00850_consen  217 --------------------------------------------------------------------------------  216 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcC
Q psy14515        314 LSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDA  393 (586)
Q Consensus       314 ~~~~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa  393 (586)
                                                                  .|++|.+|+.+|+++|+|++.+|+||+||||||||+
T Consensus       217 --------------------------------------------~g~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~  252 (311)
T PF00850_consen  217 --------------------------------------------PGTGDDEYLEAFEEILLPALEEFRPDLIVVSAGFDA  252 (311)
T ss_dssp             --------------------------------------------TTEBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STT
T ss_pred             --------------------------------------------cccchHHHHHHHhhccccchhcccCcEEEEccCccc
Confidence                                                        278899999999999999999999999999999999


Q ss_pred             CCCCcCcccccCHHHHHHHHHHHHHhcC---CcEEEEcCCCCCcchHHHHHHHHHHHHc
Q psy14515        394 CVNDPLGGCKVSPEAYAHFTHWLKALAQ---GRIILALEGGYNISSISYAMTLCTKALL  449 (586)
Q Consensus       394 ~~~DplG~~~vt~~~y~~~t~~L~~la~---grvv~vLEGGYn~~~ia~~~~~~~~~Ll  449 (586)
                      +.+||+|+++||+++|.+++++|+++|.   +|+|++|||||+++++++++..++++|.
T Consensus       253 ~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~  311 (311)
T PF00850_consen  253 HAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA  311 (311)
T ss_dssp             BTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred             chhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence            9999999999999999999999999985   4999999999999999999999999983

Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 4e-38
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 2e-21
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 5e-38
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 6e-21
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 5e-38
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 2e-21
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 5e-38
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 6e-21
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 4e-33
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 3e-20
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 8e-24
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 7e-06
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 8e-24
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 7e-06
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 9e-18
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 1e-16
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 2e-15
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 2e-14
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 6e-14
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 1e-12
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 1e-10
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 1e-10
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 1e-10
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 3e-10
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 4e-10
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 4e-10
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 4e-10
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 4e-10
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 4e-10
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 4e-10
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 4e-10
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 7e-10
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 4e-09
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  155 bits (393), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 16/245 (6%)
Query: 12  KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
           +E GL  +C+ I+ R+AT EE+   H+     L  T   +      ++L     ++++  
Sbjct: 46  QETGLRGKCEAIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFV-- 103
Query: 72  SSYKLSLLSAGSTIELRRNQKRNGXXXXXXXXXXXXXXXTIELVDNICRGEIKNGMAVIR 131
              +L     G   +   N+  +                 +ELV  +  GE+KNG AV+R
Sbjct: 104 ---RLPCGGVGVDSDTIWNEVHS------AGAARLAVGCVVELVFKVATGELKNGFAVVR 154
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
           PPGHHA +S   G+C+FN+VA+AA+      SVS++LIVDWDVHHG  TQQ FY+D  V+
Sbjct: 155 PPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVL 214
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKT---HMKDADYMAVFHQVLL 248
           Y S+HRY+ G F+P       D +G G G G+N N+         M DA+Y+A F  V++
Sbjct: 215 YMSLHRYDDGNFFPG--SGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVM 272
Query: 249 PMVAE 253
           P+ +E
Sbjct: 273 PIASE 277
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 4e-86
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 4e-42
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 1e-72
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 4e-40
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-63
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 4e-30
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 7e-60
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 5e-28
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 1e-57
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 2e-30
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 2e-57
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 2e-31
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 2e-56
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 1e-31
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 1e-51
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 3e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 97.62
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 96.91
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 95.47
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 95.26
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 94.54
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 94.05
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 93.33
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 91.97
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 91.44
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 586
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 3e-31
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 1e-26
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 2e-26
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 8e-21
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 1e-23
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 1e-20
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 3e-31
 Identities = 87/329 (26%), Positives = 136/329 (41%), Gaps = 67/329 (20%)

Query: 7   IKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDA 66
           I    +E GL  +C+ ++ R+A+ EE+   H+   + L  T   S       +L+     
Sbjct: 37  IWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQ 96

Query: 67  IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG 126
                       +   +            +   S   +  +AGS  +L   +   E+KNG
Sbjct: 97  RMFVMLPCGGVGVDTDTIW----------NELHSSNAARWAAGSVTDLAFKVASRELKNG 146

Query: 127 MAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYN 186
            AV+RPPGHHA  S   G+CFFN+VA+A +     +  S++LIVDWDVHHG  TQQ FY 
Sbjct: 147 FAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQ 206

Query: 187 DNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTH---MKDADYMAVF 243
           D  V+Y S+HR++ G F+P       D +G G G+G+N N+         M D +Y+A F
Sbjct: 207 DPSVLYISLHRHDDGNFFPG--SGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAF 264

Query: 244 HQVLLPMVA--------------------------------------------------- 252
             V++P+                                                     
Sbjct: 265 RIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLA 324

Query: 253 -EGGYCLKSLAEGAALTLRALLDDPCPNF 280
            EGG+ L ++ + +   + ALL +     
Sbjct: 325 LEGGHDLTAICDASEACVAALLGNRVDPL 353
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 97.61
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 95.88
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 92.96
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-84  Score=684.41  Aligned_cols=350  Identities=38%  Similarity=0.648  Sum_probs=293.1

Q ss_pred             chHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCC---chHHHhhhhcCCCccccCCChhhhhh
Q psy14515          2 LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGST---DVDALEQLSSHYDAIYIHPSSYKLSL   78 (586)
Q Consensus         2 ~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~---~~~~~~~l~~~~d~~~~~~~t~~~a~   78 (586)
                      +|+++|+++|++.|+.+++++++|++|+.++|++||+++||+++++.....   +...+.......  ..        ..
T Consensus        32 ~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~~L~~vH~~~YI~~l~~~~~~~~~~~~~~~~~~~~~~--~~--------~~  101 (386)
T d3c10a1          32 GRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQR--MF--------VM  101 (386)
T ss_dssp             HHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHHC-------------CB
T ss_pred             HHHHHHHHHHHhcCCccCCeEeCCCCCCHHHHHHhCCHHHHHHHhhchhhhhcccccccchhhhhh--hh--------cc
Confidence            599999999999999999999999999999999999999999998654321   111111110000  00        00


Q ss_pred             hhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHHHHHHHH
Q psy14515         79 LSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHA  158 (586)
Q Consensus        79 l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvAIAAk~a  158 (586)
                      ...|. ...+.+..+.  ...+|.++++++|++++|++.|++|+++++||++|||||||.+++++|||+|||+||||+++
T Consensus       102 ~~~~~-~~~d~dt~~~--~~~s~~Aa~~aaG~~~~a~~~v~~~~~~~afa~~rppGHHA~~~~~~GFC~fNdvAiaa~~l  178 (386)
T d3c10a1         102 LPCGG-VGVDTDTIWN--ELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQL  178 (386)
T ss_dssp             CTTSC-EESSSSCEEC--TTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTTBCBTTBSSCHHHHHHHHH
T ss_pred             cCCCC-cccCCCcccC--cchHHHHHHHHhhHHHHHHhhhhcCcccccccccccccccccccccCCcccccHHHHHHHHH
Confidence            00000 0000000011  12467777889999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCchH
Q psy14515        159 LDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDAD  238 (586)
Q Consensus       159 l~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~D  238 (586)
                      +++++++||+|||||||||||||++||+||+|+|+|||+++.+.|||+++  +.+++|.|.|+|||+|+||+. +     
T Consensus       179 ~~~~~~~rV~iiD~DvHhGnGTq~if~~~~~V~~~SiH~~~~~~~~p~tG--~~~e~G~g~g~g~~~n~pl~~-~-----  250 (386)
T d3c10a1         179 QQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSG--AVDEVGAGSGEGFNVNVAWAG-G-----  250 (386)
T ss_dssp             HHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECTTTTSTTCCC--CTTCCCCGGGTTCEEEEEECS-C-----
T ss_pred             HhhcccCCceEEecccCCCCceeeEeeccccccccccccccccccCCCCC--CHHhcCCCCCccccccccccc-c-----
Confidence            99999999999999999999999999999999999999999999999974  679999999999999999972 1     


Q ss_pred             HHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhhhh
Q psy14515        239 YMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLD  318 (586)
Q Consensus       239 Ylaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~~~  318 (586)
                                                                                                      
T Consensus       251 --------------------------------------------------------------------------------  250 (386)
T d3c10a1         251 --------------------------------------------------------------------------------  250 (386)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCC-
Q psy14515        319 RASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND-  397 (586)
Q Consensus       319 ~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~D-  397 (586)
                                                           ...+++|.+|+.+|+++|+|++++|+||+||||||||++.+| 
T Consensus       251 -------------------------------------l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~D~~~~D~  293 (386)
T d3c10a1         251 -------------------------------------LDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHP  293 (386)
T ss_dssp             -------------------------------------SSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCC
T ss_pred             -------------------------------------cCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCccccccCc
Confidence                                                 124799999999999999999999999999999999999999 


Q ss_pred             -cCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCCCcccccccccccchhhhhhhh
Q psy14515        398 -PLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIII  476 (586)
Q Consensus       398 -plG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~~~~~~~~~~~~~~~~~~~~~~  476 (586)
                       |||+++||+++|.+|+++|+.+|+||+|++||||||+.++++++.+++++|+|+++|++..+.                
T Consensus       294 ~pLg~l~lt~~~~~~~~~~l~~~~~~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~----------------  357 (386)
T d3c10a1         294 APLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEG----------------  357 (386)
T ss_dssp             GGGCCCBBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSG----------------
T ss_pred             chhhcCccCHHHHHHHHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHHHHHhCCCCCCCCccc----------------
Confidence             899999999999999999999999999999999999999999999999999999887764111                


Q ss_pred             hcCCccccccccCCCCccccccchhhhhHHHHHHHHHHHhcCccccccc
Q psy14515        477 NNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKF  525 (586)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~W~~l~~  525 (586)
                                      .    ...++.+.+++|++++.+|++||+|||.
T Consensus       358 ----------------~----~~~~~~~~~~~l~~~~~~~~~~w~~~~~  386 (386)
T d3c10a1         358 ----------------W----KQKPNLNAIRSLEAVIRVHSKYWGCMQR  386 (386)
T ss_dssp             ----------------G----GSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred             ----------------c----ccCCCHHHHHHHHHHHHHHHHhhHhhcC
Confidence                            0    0112244899999999999999999983
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure