Psyllid ID: psy14516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MVSNTPPLQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF
Secondary Structure (PSIPRED)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccEEEcEEcEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHccccEEEEEccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHc
Coil and Loop (DISEMBL)
mvsntpplqalvneemflvtpladcphtplvapvpqsgvdvkapcvdcasvaENWVCLICYQVRCGRYIEEHSNEF
Flexible Loop (DISEMBL)
mvsntpplQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF
Low Complexity Region (SEG)
MVSNTPPLQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF
Disordered region (IsUnstruct)
**********LVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYI*******
Disordered Region (DISOPRED)
******P***LVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH****
Disordered Region (DISEMBL)
MVSNTPPLQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF
Disordered Region (DISPRO)
****TPPLQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSNTPPLQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q9UBN7	1215	Histone deacetylase 6 OS=	yes	N/A	0.842	0.052	0.538	9e-15
Q9Z2V5	1149	Histone deacetylase 6 OS=	yes	N/A	0.75	0.049	0.543	2e-13
Q20296	955	Histone deacetylase 6 OS=	yes	N/A	0.723	0.057	0.436	2e-09
Q0V9G5	652	Ubiquitin carboxyl-termin	no	N/A	0.381	0.044	0.586	9e-05
Q6NTR6	690	Ubiquitin carboxyl-termin	N/A	N/A	0.381	0.042	0.586	0.0001
D2HBJ8	711	Ubiquitin carboxyl-termin	no	N/A	0.381	0.040	0.586	0.0001
Q5XGZ2	690	Ubiquitin carboxyl-termin	N/A	N/A	0.381	0.042	0.586	0.0001
Q9H0E7	712	Ubiquitin carboxyl-termin	no	N/A	0.421	0.044	0.562	0.0004
Q7ZUM8	695	Ubiquitin carboxyl-termin	no	N/A	0.421	0.046	0.562	0.0005

>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 9    QALVNEEMFL-VTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            + L ++ +F  VTPL  CPH   V P+P +G+DV  PC DC ++ ENWVCL CYQV CGR
Sbjct: 1096 RGLTDQAIFYAVTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGR 1155

Query: 68   YIEEH 72
            YI  H
Sbjct: 1156 YINGH 1160

In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8

>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 16   MFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
             + VTPL+ CPH   V P+P +G+DV  PC  C +V ENWVCL CYQV C RY+  H
Sbjct: 1038 FYAVTPLSWCPHLMAVCPIPAAGLDVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAH 1094

In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 19  VTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHS 73
           V PLA CPH   V P+P + ++ +  C +C   AE W CL CY+  CGR++ EH+
Sbjct: 849 VVPLATCPHLKEVKPLPPAKINARTACSECQIGAEVWTCLTCYKYNCGRFVNEHA 903

Probable histone deacetylase. Histone deacetylases are responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis GN=usp44 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
          CVDC +    W CL C  V CGRYIEEH+
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHA 54

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of cdc20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis GN=usp44-a PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
          CVDC +    W CL C  V CGRYIEEH+
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHA 54

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of cdc20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca GN=USP44 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
          CVDC +    W CL C  V CGRYIEEH+
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHA 57

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of CDC20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C). Deubiquitination of CDC20 leads to stabilize the MAD2L1-CDC20-APC/C ternary complex (also named mitotic checkpoint), thereby preventing premature activation of the APC/C.

Ailuropoda melanoleuca (taxid: 9646)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis GN=usp44-b PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
          CVDC +    W CL C  V CGRYIEEH+
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHA 54

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of cdc20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 42 KAPCVDCASVAENWVCLICYQVRCGRYIEEHS 73
          K  CVDC +    W CL C  V CGRYIEEH+
Sbjct: 26 KWHCVDCNTTESIWACLSCSHVACGRYIEEHA 57

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of CDC20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C). Deubiquitination of CDC20 leads to stabilize the MAD2L1-CDC20-APC/C ternary complex (also named mitotic checkpoint), thereby preventing premature activation of the APC/C.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44 PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 42 KAPCVDCASVAENWVCLICYQVRCGRYIEEHS 73
          K  CVDC +    W CL C  V CGRYIEEH+
Sbjct: 23 KWHCVDCNTTESVWACLSCSHVACGRYIEEHA 54

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of cdc20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
345489606	1094	PREDICTED: histone deacetylase 6-like [N	0.868	0.060	0.590	1e-16
332021768	1204	Histone deacetylase 6 [Acromyrmex echina	0.868	0.054	0.560	3e-16
307212499	1136	Histone deacetylase 6 [Harpegnathos salt	0.868	0.058	0.560	3e-16
242022432	1146	histone deacetylase hda2, putative [Pedi	0.855	0.056	0.6	4e-16
380012501	1179	PREDICTED: LOW QUALITY PROTEIN: histone	0.855	0.055	0.538	1e-15
307183184	1165	Histone deacetylase 6 [Camponotus florid	0.868	0.056	0.590	2e-15
383864231	1169	PREDICTED: histone deacetylase 6-like [M	0.855	0.055	0.538	7e-15
328781356	1129	PREDICTED: LOW QUALITY PROTEIN: histone	0.855	0.057	0.538	9e-15
340718184	1160	PREDICTED: histone deacetylase 6-like [B	0.842	0.055	0.531	2e-14
348540413	1131	PREDICTED: histone deacetylase 6-like [O	0.75	0.050	0.596	2e-14

>gi|345489606|ref|XP_003426178.1| PREDICTED: histone deacetylase 6-like [Nasonia vitripennis]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 48/66 (72%)

Query: 8    LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            LQAL+ EEMF V PL+DCPH   V  VP SG+DV +PCV+C+S  ENW+CL CY V C R
Sbjct: 967  LQALLAEEMFAVIPLSDCPHLGSVKEVPASGIDVNSPCVECSSTVENWICLECYTVHCAR 1026

Query: 68   YIEEHS 73
             I +H+
Sbjct: 1027 NINQHA 1032

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021768|gb|EGI62119.1| Histone deacetylase 6 [Acromyrmex echinatior]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 44/66 (66%)

Query: 8    LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            LQAL   EMF + PL DCPH   V  VP  G+DV  PC +CAS+AENW+CL CY V C R
Sbjct: 1081 LQALTAGEMFAIVPLQDCPHLFTVNEVPPGGIDVTTPCAECASIAENWICLQCYTVHCAR 1140

Query: 68   YIEEHS 73
             I +H+
Sbjct: 1141 SINQHA 1146

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212499|gb|EFN88230.1| Histone deacetylase 6 [Harpegnathos saltator]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 45/66 (68%)

Query: 8    LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            LQAL   EMF V PL DCPH  +V  VP SG+D+  PC +CAS AENW+CL CY V C R
Sbjct: 1009 LQALTAGEMFAVVPLRDCPHLFMVNEVPPSGIDMTLPCTECASTAENWICLQCYTVHCAR 1068

Query: 68   YIEEHS 73
             + +H+
Sbjct: 1069 NVNQHA 1074

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022432|ref|XP_002431644.1| histone deacetylase hda2, putative [Pediculus humanus corporis] gi|212516952|gb|EEB18906.1| histone deacetylase hda2, putative [Pediculus humanus corporis]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 45/65 (69%)

Query: 8    LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            +Q L+N+EMF V PL  CPH   V  VPQSG+DV  PC  C S  ENW+CLICY V CGR
Sbjct: 1015 MQRLLNQEMFAVVPLPGCPHLVQVQAVPQSGIDVNTPCGTCDSQQENWICLICYLVFCGR 1074

Query: 68   YIEEH 72
            YI +H
Sbjct: 1075 YINQH 1079

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012501|ref|XP_003690319.1| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 6-like [Apis florea]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 45/65 (69%)

Query: 8    LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            LQAL+  +MF V PL +CPH   +  VP SG+DV  PCV+C S+AENW+CL CY + C R
Sbjct: 1057 LQALIAGDMFAVIPLRECPHLDSIRDVPASGIDVHLPCVECGSIAENWICLQCYIIHCAR 1116

Query: 68   YIEEH 72
             I +H
Sbjct: 1117 NINQH 1121

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183184|gb|EFN70093.1| Histone deacetylase 6 [Camponotus floridanus]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 45/66 (68%)

Query: 8    LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            LQAL   EMF V PL DCPH   V  VP SG+DV  PC++CAS AENW+CL CY V C R
Sbjct: 1041 LQALTAGEMFAVVPLRDCPHLFTVNEVPPSGIDVTLPCMECASTAENWICLQCYTVHCAR 1100

Query: 68   YIEEHS 73
             I +H+
Sbjct: 1101 SINQHA 1106

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864231|ref|XP_003707583.1| PREDICTED: histone deacetylase 6-like [Megachile rotundata]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query: 8    LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            LQAL+  EMF V PL +CPH   V+ VP SG+DV  PC +C S  ENW+CL CY V C R
Sbjct: 1047 LQALIAGEMFAVVPLRECPHLNSVSDVPASGIDVHLPCAECGSNVENWICLQCYTVHCAR 1106

Query: 68   YIEEH 72
             + +H
Sbjct: 1107 NVNQH 1111

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781356|ref|XP_001121726.2| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 6 [Apis mellifera]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query: 8    LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
            LQALV  +MF V PL +CPH   +  VP  G+DV  PCV+C S AENW+CL CY + C R
Sbjct: 1042 LQALVAGDMFAVIPLKECPHLDSIRDVPALGIDVHLPCVECESTAENWICLQCYIIHCAR 1101

Query: 68   YIEEH 72
             I +H
Sbjct: 1102 NINQH 1106

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718184|ref|XP_003397551.1| PREDICTED: histone deacetylase 6-like [Bombus terrestris]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 9    QALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRY 68
            QALV+ +MF V PL +CPH   V  VP SG+D+ +PC++C S  ENW+CL CY V C R 
Sbjct: 1040 QALVDGDMFAVIPLRECPHLNSVKDVPVSGIDIYSPCIECESNVENWICLQCYTVHCARS 1099

Query: 69   IEEH 72
            I +H
Sbjct: 1100 INQH 1103

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348540413|ref|XP_003457682.1| PREDICTED: histone deacetylase 6-like [Oreochromis niloticus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 16   MFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
            +++V PL+ CPH   V P+P SG+DV  PC DC S AENW+CL CYQV CGRY+ EH
Sbjct: 1020 LYVVDPLSWCPHLDAVKPLPSSGIDVFRPCQDCGSEAENWICLTCYQVFCGRYVNEH 1076

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
UNIPROTKB|I3LEZ7	1130	HDAC6 "Uncharacterized protein	0.842	0.056	0.569	2.8e-15
UNIPROTKB|F1PN11	1157	HDAC6 "Uncharacterized protein	0.75	0.049	0.596	2.9e-15
UNIPROTKB|Q9UBN7	1215	HDAC6 "Histone deacetylase 6"	0.842	0.052	0.538	6.4e-15
UNIPROTKB|B4DZH6	1229	HDAC6 "Histone deacetylase 6"	0.842	0.052	0.538	6.5e-15
ZFIN|ZDB-GENE-030131-3232	1081	hdac6 "histone deacetylase 6"	0.842	0.059	0.515	1.1e-14
UNIPROTKB|F1MQP3	1128	HDAC6 "Uncharacterized protein	0.789	0.053	0.557	2.5e-14
UNIPROTKB|F1LSE3	1155	Hdac6 "Protein Hdac6" [Rattus	0.736	0.048	0.571	2.6e-14
MGI|MGI:1333752	1149	Hdac6 "histone deacetylase 6"	0.736	0.048	0.553	5.4e-14
UNIPROTKB|G8JYB7	138	hda-6 "Protein HDA-6, isoform	0.934	0.514	0.378	2.2e-11
FB|FBgn0026428	1138	HDAC6 "HDAC6" [Drosophila mela	0.868	0.057	0.478	5.2e-11

UNIPROTKB|I3LEZ7 HDAC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 206 (77.6 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 37/65 (56%), Positives = 45/65 (69%)

Query:     9 QALVNEEMFL-VTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
             QA  ++ MF  V+PL  CPH   V PVP++G+DV  PC DC ++ ENWVCL CYQV CGR
Sbjct:  1011 QADTDQAMFYAVSPLLWCPHVVAVRPVPEAGLDVTQPCQDCGALQENWVCLSCYQVCCGR 1070

Query:    68 YIEEH 72
             YI  H
Sbjct:  1071 YINAH 1075

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PN11 HDAC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 206 (77.6 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 34/57 (59%), Positives = 40/57 (70%)

Query:    16 MFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
             ++ VTPL  CPH   V P+P+SG+DV  PC DC  + ENWVCL CYQV CGRYI  H
Sbjct:  1046 LYAVTPLPWCPHLVAVCPIPESGLDVTQPCQDCGVLQENWVCLSCYQVYCGRYISAH 1102

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9UBN7 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 6.4e-15, P = 6.4e-15
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query:     9 QALVNEEMFL-VTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
             + L ++ +F  VTPL  CPH   V P+P +G+DV  PC DC ++ ENWVCL CYQV CGR
Sbjct:  1096 RGLTDQAIFYAVTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGR 1155

Query:    68 YIEEH 72
             YI  H
Sbjct:  1156 YINGH 1160

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0097372 "NAD-dependent histone deacetylase activity (H3-K18 specific)" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=ISS;IDA

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISS

GO:0019899 "enzyme binding" evidence=ISS

GO:0016575 "histone deacetylation" evidence=ISS;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0090042 "tubulin deacetylation" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=ISS;IDA

GO:0004407 "histone deacetylase activity" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006476 "protein deacetylation" evidence=IMP

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IMP

GO:0043242 "negative regulation of protein complex disassembly" evidence=IMP

GO:0060632 "regulation of microtubule-based movement" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031252 "cell leading edge" evidence=IDA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IMP

GO:0045861 "negative regulation of proteolysis" evidence=IMP

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0070848 "response to growth factor stimulus" evidence=IMP

GO:0016234 "inclusion body" evidence=IDA

GO:0016236 "macroautophagy" evidence=IMP

GO:0035967 "cellular response to topologically incorrect protein" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0032418 "lysosome localization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0043014 "alpha-tubulin binding" evidence=IDA

GO:0016235 "aggresome" evidence=IDA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IMP

GO:0005901 "caveola" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

GO:0051354 "negative regulation of oxidoreductase activity" evidence=IC

GO:0010727 "negative regulation of hydrogen peroxide metabolic process" evidence=IC

GO:0070842 "aggresome assembly" evidence=IMP

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IMP

GO:0051788 "response to misfolded protein" evidence=IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0030286 "dynein complex" evidence=IDA

GO:0010033 "response to organic substance" evidence=IMP

GO:0009636 "response to toxic substance" evidence=IMP

GO:0009967 "positive regulation of signal transduction" evidence=IMP

GO:0010469 "regulation of receptor activity" evidence=IMP

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=TAS

GO:0048156 "tau protein binding" evidence=IDA

GO:0070846 "Hsp90 deacetylation" evidence=IMP

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IMP

GO:0070840 "dynein complex binding" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|B4DZH6 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 6.5e-15, P = 6.5e-15
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query:     9 QALVNEEMFL-VTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
             + L ++ +F  VTPL  CPH   V P+P +G+DV  PC DC ++ ENWVCL CYQV CGR
Sbjct:  1110 RGLTDQAIFYAVTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGR 1169

Query:    68 YIEEH 72
             YI  H
Sbjct:  1170 YINGH 1174

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-030131-3232 hdac6 "histone deacetylase 6" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query:     9 QALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRY 68
             QA   + M++V PL  CPH   V PVP  G+DV  PC +C   AENW+CL CY+V CGRY
Sbjct:   963 QATDVDTMYVVDPLPWCPHLESVRPVPAGGIDVFQPCEECGGEAENWICLFCYKVLCGRY 1022

Query:    69 IEEH 72
             + +H
Sbjct:  1023 VNQH 1026

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006476 "protein deacetylation" evidence=IGI

GO:0001525 "angiogenesis" evidence=IGI;IMP

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1MQP3 HDAC6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 34/61 (55%), Positives = 42/61 (68%)

Query:    13 NEEMFL-VTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEE 71
             +E MF  V PL  CPH   V P+P++G++V  PC DC ++ ENWVCL CYQV CGRYI  
Sbjct:  1013 DEVMFYAVRPLLWCPHLAAVCPIPETGLNVTQPCQDCGTLQENWVCLSCYQVYCGRYINA 1072

Query:    72 H 72
             H
Sbjct:  1073 H 1073

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LSE3 Hdac6 "Protein Hdac6" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 32/56 (57%), Positives = 38/56 (67%)

Query:    17 FLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
             + VTPL+ CPH   V P+P +G+DV  PC  C SV ENWVCL CYQV C RY+  H
Sbjct:  1045 YAVTPLSWCPHLMAVCPIPAAGLDVSQPCKTCGSVQENWVCLTCYQVYCSRYVNAH 1100

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1333752 Hdac6 "histone deacetylase 6" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 31/56 (55%), Positives = 38/56 (67%)

Query:    17 FLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
             + VTPL+ CPH   V P+P +G+DV  PC  C +V ENWVCL CYQV C RY+  H
Sbjct:  1039 YAVTPLSWCPHLMAVCPIPAAGLDVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAH 1094

GO:0000118 "histone deacetylase complex" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0003779 "actin binding" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005874 "microtubule" evidence=ISO

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0005901 "caveola" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006476 "protein deacetylation" evidence=ISO;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IGI;IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009636 "response to toxic substance" evidence=ISO

GO:0009967 "positive regulation of signal transduction" evidence=ISO

GO:0010033 "response to organic substance" evidence=ISO

GO:0010469 "regulation of receptor activity" evidence=ISO

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISO

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=ISO

GO:0016234 "inclusion body" evidence=ISO

GO:0016235 "aggresome" evidence=ISO

GO:0016236 "macroautophagy" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016575 "histone deacetylation" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031078 "histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0031252 "cell leading edge" evidence=ISO

GO:0031593 "polyubiquitin binding" evidence=ISO

GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0032129 "histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0032418 "lysosome localization" evidence=ISO

GO:0034739 "histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=ISO

GO:0035967 "cellular response to topologically incorrect protein" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0042903 "tubulin deacetylase activity" evidence=ISO;IDA

GO:0043014 "alpha-tubulin binding" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0043241 "protein complex disassembly" evidence=IGI

GO:0043242 "negative regulation of protein complex disassembly" evidence=ISO

GO:0045861 "negative regulation of proteolysis" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0048156 "tau protein binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0051788 "response to misfolded protein" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0070201 "regulation of establishment of protein localization" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO

GO:0070840 "dynein complex binding" evidence=ISO

GO:0070842 "aggresome assembly" evidence=ISO;IGI

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=ISO

GO:0070846 "Hsp90 deacetylation" evidence=ISO;IMP

GO:0070848 "response to growth factor stimulus" evidence=ISO

GO:0070932 "histone H3 deacetylation" evidence=IEA

GO:0070933 "histone H4 deacetylation" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IMP

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=ISO

GO:0090042 "tubulin deacetylation" evidence=ISO;IDA;IMP

UNIPROTKB|G8JYB7 hda-6 "Protein HDA-6, isoform d" [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 28/74 (37%), Positives = 42/74 (56%)

Query:     3 SNTPP---LQALVNEEMFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLI 59
             S+T P   L+ + +     V PLA CPH   V P+P + ++ +  C +C   AE W CL 
Sbjct:    13 SSTRPSHNLEIMDSGPAHAVVPLATCPHLKEVKPLPPAKINARTACSECQIGAEVWTCLT 72

Query:    60 CYQVRCGRYIEEHS 73
             CY+  CGR++ EH+
Sbjct:    73 CYKYNCGRFVNEHA 86

GO:0006476 "protein deacetylation" evidence=ISS

FB|FBgn0026428 HDAC6 "HDAC6" [Drosophila melanogaster (taxid:7227)]

 Score = 166 (63.5 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 33/69 (47%), Positives = 39/69 (56%)

Query:     9 QALVNEEMFLVTPLADCPHTPLVAP--VPQSGVDVKAPCVDCASVAENWVCLICYQVRCG 66
             +AL   EMF V PL  CPH  L+ P   P+S +D  A C  C S  ENWVCL C  V CG
Sbjct:   980 EALEQSEMFAVYPLKTCPHLRLLRPEEAPRS-LDSGAECSVCGSTGENWVCLSCRHVACG 1038

Query:    67 RYIEEHSNE 75
             RY+  H  +
Sbjct:  1039 RYVNAHMEQ 1047

GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;NAS

GO:0016575 "histone deacetylation" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0022904 "respiratory electron transport chain" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UBN7	HDAC6_HUMAN	3, ., 5, ., 1, ., 9, 8	0.5384	0.8421	0.0526	yes	N/A
Q9Z2V5	HDAC6_MOUSE	3, ., 5, ., 1, ., 9, 8	0.5438	0.75	0.0496	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
smart00290	50	smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H	3e-08
pfam02148	63	pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas	3e-06

>gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

 Score = 44.7 bits (106), Expect = 3e-08
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 44 PCVDCASVAENWVCLICYQVRCGRYIEEHS 73
           C  C ++   W+CL C QV CGRY   H+
Sbjct: 1  RCSVCGTIENLWLCLTCGQVGCGRYQNGHA 30

Length = 50

>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein

 Score = 40.1 bits (94), Expect = 3e-06
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHSNE 75
          C +C S    W+CL C  V CGRY   H+ +
Sbjct: 1  CSECGSTENLWLCLTCGHVGCGRYSNGHALK 31

Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
PF02148	63	zf-UBP: Zn-finger in ubiquitin-hydrolases and othe	99.16
KOG0804|consensus	493		99.09
smart00290	50	ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like	99.01
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	98.98
KOG0944|consensus	763		98.87
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	97.84
KOG1873|consensus	877		96.9
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	85.2
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	82.51
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	80.33

>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.16  E-value=9e-12  Score=72.97  Aligned_cols=32  Identities=41%  Similarity=0.978  Sum_probs=28.0

Q ss_pred             cCcCCCC-CCeeeecccCceeecCCCcchhccC
Q psy14516         45 CVDCASV-AENWVCLICYQVRCGRYIEEHSNEF   76 (76)
Q Consensus        45 C~~C~~~-~~~W~CL~Cg~v~CgR~~~~Ha~~H   76 (76)
                      |++|+.. .++|+||+||+++|||+.++||++|
T Consensus         1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H   33 (63)
T PF02148_consen    1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKH   33 (63)
T ss_dssp             -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHH
T ss_pred             CCCCCCcCCceEEeCCCCcccccCCcCcHHHHh
Confidence            7788877 8999999999999999999999887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....

>KOG0804|consensus

Probab=99.09  E-value=2.3e-11  Score=94.31  Aligned_cols=36  Identities=39%  Similarity=1.001  Sum_probs=33.8

Q ss_pred             CccccCcCCCCCCeeeecccCceeecCCCcchhccC
Q psy14516         41 VKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF   76 (76)
Q Consensus        41 ~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~~~Ha~~H   76 (76)
                      ....|.+|+...++|+||+||+||||||..|||++|
T Consensus       227 e~~~c~~c~~~~~LwicliCg~vgcgrY~eghA~rH  262 (493)
T KOG0804|consen  227 ESSLCLACGCTEDLWICLICGNVGCGRYKEGHARRH  262 (493)
T ss_pred             hhhhhhhhcccccEEEEEEccceecccccchhHHHH
Confidence            367799999999999999999999999999999998

>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

Probab=99.01  E-value=1.3e-10  Score=64.53  Aligned_cols=33  Identities=42%  Similarity=0.983  Sum_probs=30.7

Q ss_pred             ccCcCCCCCCeeeecccCceeecCCCcchhccC
Q psy14516         44 PCVDCASVAENWVCLICYQVRCGRYIEEHSNEF   76 (76)
Q Consensus        44 ~C~~C~~~~~~W~CL~Cg~v~CgR~~~~Ha~~H   76 (76)
                      +|.+|....++|+||+|++++|+|+.++|+.+|
T Consensus         1 ~C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H   33 (50)
T smart00290        1 RCSVCGTIENLWLCLTCGQVGCGRYQLGHALEH   33 (50)
T ss_pred             CcccCCCcCCeEEecCCCCcccCCCCCcHHHHH
Confidence            589999999999999999999999989999876

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2e-10  Score=91.16  Aligned_cols=64  Identities=27%  Similarity=0.444  Sum_probs=49.9

Q ss_pred             ccceEeeeeCCCCCCccCcccCCCC-CCCCccccCcCCCCCCeeeecccCceeecCC-----CcchhccC
Q psy14516         13 NEEMFLVTPLADCPHTPLVAPVPQS-GVDVKAPCVDCASVAENWVCLICYQVRCGRY-----IEEHSNEF   76 (76)
Q Consensus        13 ~~~~fav~p~~~CpHl~~l~~~~~~-~~~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~-----~~~Ha~~H   76 (76)
                      .+.-.|+..+.+|+|.-.+.+-... ..-....|+.|+...++|+||+||.+||||-     +||||+.|
T Consensus       143 d~~~~w~~E~~tC~H~~n~~~~s~~~~ni~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsH  212 (749)
T COG5207         143 DERVLWRDEEVTCVHGCNEGPSSIEMGNIGGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSH  212 (749)
T ss_pred             hhhhhhhhhcccccccCCCCCCcccccccCCceeccccchhceEEEEecCcccccceeecCCCCcchhhh
Confidence            4456789999999998765431111 1125678999999999999999999999994     69999887

>KOG0944|consensus

Probab=98.87  E-value=9.8e-10  Score=88.59  Aligned_cols=62  Identities=18%  Similarity=0.378  Sum_probs=46.7

Q ss_pred             ceEeeeeCCCCCCcc-CcccCCCC-CC-CCccccCcCCCCCCeeeecccCceeecCC------CcchhccC
Q psy14516         15 EMFLVTPLADCPHTP-LVAPVPQS-GV-DVKAPCVDCASVAENWVCLICYQVRCGRY------IEEHSNEF   76 (76)
Q Consensus        15 ~~fav~p~~~CpHl~-~l~~~~~~-~~-~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~------~~~Ha~~H   76 (76)
                      ..-|+.++.++++.. .+.+++.. .+ ...++|+.|+...++|+||+||.|+|||.      +|+||+.|
T Consensus       149 ~~aWd~Evr~v~k~~~nl~q~dng~~~~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~H  219 (763)
T KOG0944|consen  149 VNAWDNEVRTVSKHANNLSQIDNGKRIPPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSH  219 (763)
T ss_pred             hhhhhhheeeccCCCCChhhcccCcccCCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHh
Confidence            345667775555544 36554432 23 46799999999999999999999999995      49999987

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=97.84  E-value=1e-05  Score=61.72  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=34.2

Q ss_pred             CCccccCcCCCCCCeeeecccCceeecCCCcchhccC
Q psy14516         40 DVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF   76 (76)
Q Consensus        40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~~~Ha~~H   76 (76)
                      +....|+.|+...++|+||+||.+++||..++||..|
T Consensus        14 d~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H   50 (440)
T cd02669          14 DFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTH   50 (440)
T ss_pred             cccccccccCCCCcEEEEcccCCeecCCCCCcHHHHH
Confidence            5677899999999999999999999999999999877

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1873|consensus

Probab=96.90  E-value=0.00041  Score=57.41  Aligned_cols=52  Identities=25%  Similarity=0.526  Sum_probs=38.0

Q ss_pred             CCCccC-ccc--CCCCCC-CCccccCcCCC---------------CCCeeeecccCceeecC-CCcchhccC
Q psy14516         25 CPHTPL-VAP--VPQSGV-DVKAPCVDCAS---------------VAENWVCLICYQVRCGR-YIEEHSNEF   76 (76)
Q Consensus        25 CpHl~~-l~~--~~~~~~-~~~~~C~~C~~---------------~~~~W~CL~Cg~v~CgR-~~~~Ha~~H   76 (76)
                      |.|+.. +..  +.+... ..+..|.+|..               ...+|+||.||+.+||| ....||++|
T Consensus        45 C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~s~~~~~~~~~iWLCLkCG~q~CG~~~~~~halkH  116 (877)
T KOG1873|consen   45 CQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGGSSDQFEFDNAIWLCLKCGYQGCGRNSESQHALKH  116 (877)
T ss_pred             cchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCCCccccccccceeeecccCCeeeCCCcccchhhhh
Confidence            999987 332  111111 25677998873               34699999999999999 789999887

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=85.20  E-value=0.29  Score=28.84  Aligned_cols=24  Identities=17%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             CccccCcCCCCCCeeeecccCcee
Q psy14516         41 VKAPCVDCASVAENWVCLICYQVR   64 (76)
Q Consensus        41 ~~~~C~~C~~~~~~W~CL~Cg~v~   64 (76)
                      ..++|..|....+...|..||..|
T Consensus        35 ~I~RC~~CRk~~~~Y~CP~CGF~G   58 (59)
T PRK14890         35 IIYRCEKCRKQSNPYTCPKCGFEG   58 (59)
T ss_pred             eEeechhHHhcCCceECCCCCCcC
Confidence            367899999999999999999875

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=82.51  E-value=0.4  Score=28.37  Aligned_cols=24  Identities=17%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             CccccCcCCCCCCeeeecccCcee
Q psy14516         41 VKAPCVDCASVAENWVCLICYQVR   64 (76)
Q Consensus        41 ~~~~C~~C~~~~~~W~CL~Cg~v~   64 (76)
                      ...+|+.|...++...|..||..|
T Consensus        37 ~I~Rc~~CRk~g~~Y~Cp~CGF~G   60 (61)
T COG2888          37 EIYRCAKCRKLGNPYRCPKCGFEG   60 (61)
T ss_pred             eeehhhhHHHcCCceECCCcCccC
Confidence            578899999999999999999875

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=80.33  E-value=0.8  Score=23.32  Aligned_cols=20  Identities=30%  Similarity=0.871  Sum_probs=12.8

Q ss_pred             cccCcCCCC----CCeeeecccCc
Q psy14516         43 APCVDCASV----AENWVCLICYQ   62 (76)
Q Consensus        43 ~~C~~C~~~----~~~W~CL~Cg~   62 (76)
                      +.|..|+-.    ...|.|..||.
T Consensus         2 ~~C~~CGy~y~~~~~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEEAPWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCcCCCcCcCCCC
Confidence            356666633    35778888775

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
3c5k_A	109	Crystal Structure Of Human Hdac6 Zinc Finger Domain		6e-14
3gv4_A	107	Crystal Structure Of Human Hdac6 Zinc Finger Domain		1e-13

>pdb|3C5K|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain Length = 109

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 20 TPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
          +PL  CPH   V P+P +G+DV  PC DC ++ ENWVCL CYQV CGRYI  H
Sbjct: 2  SPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGH 54

>pdb|3GV4|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain And Ubiquitin C-Terminal Peptide Rlrgg Length = 107

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 36/52 (69%)
Query: 21 PLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
          PL  CPH   V P+P +G+DV  PC DC ++ ENWVCL CYQV CGRYI  H
Sbjct: 1  PLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGH 52
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	6e-14
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	3e-07
2ida_A	102	Hypothetical protein; zinc binding protein, struct	5e-07
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	3e-06
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	4e-05

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109

 Score = 60.4 bits (146), Expect = 6e-14
 Identities = 31/56 (55%), Positives = 38/56 (67%)

Query: 20 TPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNE 75
          +PL  CPH   V P+P +G+DV  PC DC ++ ENWVCL CYQV CGRYI  H  +
Sbjct: 2  SPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQ 57

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129

 Score = 43.5 bits (102), Expect = 3e-07
 Identities = 9/47 (19%), Positives = 12/47 (25%), Gaps = 2/47 (4%)

Query: 25 CPHTPLV--APVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYI 69
            H   +     P         C  C      W+ L    + CGR  
Sbjct: 15 SKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRY 61

>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102

 Score = 42.3 bits (99), Expect = 5e-07
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 9/54 (16%)

Query: 25 CPHTPLVAPVPQSGVDVKAPCVDCASVAENWV----CLICYQVRCGRY-IEEHS 73
          C H   +  V  S       C +C  +   WV    C  C  V C      +H+
Sbjct: 5  CRHVAGIRTVTPSA----LGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHA 54

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126

 Score = 37.8 bits (87), Expect = 4e-05
 Identities = 8/37 (21%), Positives = 11/37 (29%)

Query: 36 QSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
                     +       W+CL C    CGR  +E 
Sbjct: 36 TDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQ 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	99.74
2ida_A	102	Hypothetical protein; zinc binding protein, struct	99.58
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	99.53
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	99.52
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	99.33
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.23
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.1
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	89.29
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	87.4
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	85.92
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	85.4

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A

Probab=99.74  E-value=1.2e-18  Score=111.71  Aligned_cols=57  Identities=54%  Similarity=1.201  Sum_probs=50.2

Q ss_pred             eeCCCCCCccCcccCCCCCCCCccccCcCCCCCCeeeecccCceeecCCCcchhccC
Q psy14516         20 TPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF   76 (76)
Q Consensus        20 ~p~~~CpHl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~~~Ha~~H   76 (76)
                      +|+.+|||+..+.++++..++....|++|+...++|+||+||+||||||.++||++|
T Consensus         2 ~~~~~C~Hl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H   58 (109)
T 3c5k_A            2 SPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQH   58 (109)
T ss_dssp             CCBSCCTTGGGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHH
T ss_pred             CCCCCCcCcccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHH
Confidence            578899999988765544445678899999999999999999999999999999987

>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5

Probab=99.58  E-value=2e-16  Score=100.70  Aligned_cols=50  Identities=20%  Similarity=0.480  Sum_probs=43.2

Q ss_pred             CCCCCccCcccCCCCCCCCccccCcCCCCC----CeeeecccCceeecCC-CcchhccC
Q psy14516         23 ADCPHTPLVAPVPQSGVDVKAPCVDCASVA----ENWVCLICYQVRCGRY-IEEHSNEF   76 (76)
Q Consensus        23 ~~CpHl~~l~~~~~~~~~~~~~C~~C~~~~----~~W~CL~Cg~v~CgR~-~~~Ha~~H   76 (76)
                      ..|||+..++.+++    ..+.|.+|+..+    ++|+||+||+|||||| .|+||++|
T Consensus         3 ~~C~Hl~~~~~~~p----~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H   57 (102)
T 2ida_A            3 MGCRHVAGIRTVTP----SALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRH   57 (102)
T ss_dssp             CCCGGGGGCCCCCC----SSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHH
T ss_pred             CcCcCccccccCCC----CCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHH
Confidence            35999998886544    368899999997    7778999999999998 99999987

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A

Probab=99.53  E-value=3.2e-15  Score=98.22  Aligned_cols=54  Identities=19%  Similarity=0.343  Sum_probs=44.8

Q ss_pred             CCCCCccCcccCCCC-CC-CCccccCcCCCCCCeeeecccCceeecCCC------cchhccC
Q psy14516         23 ADCPHTPLVAPVPQS-GV-DVKAPCVDCASVAENWVCLICYQVRCGRYI------EEHSNEF   76 (76)
Q Consensus        23 ~~CpHl~~l~~~~~~-~~-~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~------~~Ha~~H   76 (76)
                      ..|||+..+.+++.. .+ +..+.|++|+...++|+||+||+||||||.      ++||++|
T Consensus        13 ~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H   74 (129)
T 2g45_A           13 QVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH   74 (129)
T ss_dssp             EECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHH
T ss_pred             CCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHH
Confidence            579999987764322 22 356789999999999999999999999986      9999987

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}

Probab=99.33  E-value=6.8e-14  Score=91.38  Aligned_cols=55  Identities=27%  Similarity=0.511  Sum_probs=40.3

Q ss_pred             CCCCCCccCcccCCC---CCC-CCccccCcCCC--------------CCCeeeecccCceeecCC-CcchhccC
Q psy14516         22 LADCPHTPLVAPVPQ---SGV-DVKAPCVDCAS--------------VAENWVCLICYQVRCGRY-IEEHSNEF   76 (76)
Q Consensus        22 ~~~CpHl~~l~~~~~---~~~-~~~~~C~~C~~--------------~~~~W~CL~Cg~v~CgR~-~~~Ha~~H   76 (76)
                      +..|||+..+..++.   ... ...+.|.+|..              ..++|+||+||+|||||| .++||++|
T Consensus         4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H   77 (126)
T 2i50_A            4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKH   77 (126)
T ss_dssp             -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHH
T ss_pred             CCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHH
Confidence            468999986432211   111 13467888886              689999999999999998 68999987

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.23  E-value=4.6e-12  Score=101.80  Aligned_cols=59  Identities=17%  Similarity=0.299  Sum_probs=45.5

Q ss_pred             eeeeC-CCCCCccCcccCCC-CCC-CCccccCcCCCCCCeeeecccCceeecCCC------cchhccC
Q psy14516         18 LVTPL-ADCPHTPLVAPVPQ-SGV-DVKAPCVDCASVAENWVCLICYQVRCGRYI------EEHSNEF   76 (76)
Q Consensus        18 av~p~-~~CpHl~~l~~~~~-~~~-~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~------~~Ha~~H   76 (76)
                      |...+ ..|+|+..+.+++. ..+ ...+.|.+|+...++|+||+||+|||||+.      ++||++|
T Consensus       188 w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H  255 (854)
T 3ihp_A          188 WDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH  255 (854)
T ss_dssp             ----CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHH
T ss_pred             hcCccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHH
Confidence            55555 78999998765442 222 356889999999999999999999999975      8999987

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.10  E-value=2.5e-12  Score=95.28  Aligned_cols=57  Identities=19%  Similarity=0.385  Sum_probs=40.8

Q ss_pred             eeeeCCCCCCccCcccC---------------------CCC-CCCCccccCcCCCC--CCeeeecccCceeecCCCcchh
Q psy14516         18 LVTPLADCPHTPLVAPV---------------------PQS-GVDVKAPCVDCASV--AENWVCLICYQVRCGRYIEEHS   73 (76)
Q Consensus        18 av~p~~~CpHl~~l~~~---------------------~~~-~~~~~~~C~~C~~~--~~~W~CL~Cg~v~CgR~~~~Ha   73 (76)
                      ||.||.+|||+..+-..                     +.. .......|++|...  .++|+||+||++|||+  ++||
T Consensus         2 ~~~~~~~C~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~   79 (476)
T 3mhs_A            2 AAAAMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWN--HSHF   79 (476)
T ss_dssp             ---CCCCCHHHHHHTTSHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSBCTTTCCBCSSSEEEESSSSCEEETT--TTHH
T ss_pred             CcccccCCcCHHHHhcchhhHHHHHHHhHHHHHhhccCchhhcccCCCCcccccCCCCCCceEeCCCCCCccCC--chHH
Confidence            68899999999986210                     000 00123569999988  7999999999999998  8898


Q ss_pred             ccC
Q psy14516         74 NEF   76 (76)
Q Consensus        74 ~~H   76 (76)
                      .+|
T Consensus        80 ~~H   82 (476)
T 3mhs_A           80 LSH   82 (476)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=89.29  E-value=0.51  Score=27.27  Aligned_cols=32  Identities=28%  Similarity=0.693  Sum_probs=25.0

Q ss_pred             CccccCcCCCCCCe--eeecccCceeecC--CCcchh
Q psy14516         41 VKAPCVDCASVAEN--WVCLICYQVRCGR--YIEEHS   73 (76)
Q Consensus        41 ~~~~C~~C~~~~~~--W~CL~Cg~v~CgR--~~~~Ha   73 (76)
                      ...+|..|.....+  ..| .||.++|+.  |...|.
T Consensus        14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~   49 (64)
T 1wg2_A           14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHE   49 (64)
T ss_dssp             CSCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTT
T ss_pred             cCCcChhhCCcccccCeEe-ecCCEecccCCCccccC
Confidence            56789999987554  679 899999994  666664

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=87.40  E-value=0.53  Score=27.23  Aligned_cols=32  Identities=28%  Similarity=0.624  Sum_probs=24.8

Q ss_pred             CccccCcCCCCCCe--eeecccCceeecC--CCcchh
Q psy14516         41 VKAPCVDCASVAEN--WVCLICYQVRCGR--YIEEHS   73 (76)
Q Consensus        41 ~~~~C~~C~~~~~~--W~CL~Cg~v~CgR--~~~~Ha   73 (76)
                      ...+|..|.....+  ..| .||.++|++  |...|.
T Consensus        14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HRy~e~H~   49 (64)
T 1wfh_A           14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGSHRYPEVHG   49 (64)
T ss_dssp             SCCCCTTTCCCCCTTCEEC-SSSCEECTTTCSTTTTT
T ss_pred             cCCcChhhCCccCccCEEe-ecCCEeccccCCcccCC
Confidence            56789999986554  679 799999994  666664

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.92  E-value=0.63  Score=27.08  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=25.9

Q ss_pred             CccccCcCCCCCCe-----eeecccCceeecC--CCcchh
Q psy14516         41 VKAPCVDCASVAEN-----WVCLICYQVRCGR--YIEEHS   73 (76)
Q Consensus        41 ~~~~C~~C~~~~~~-----W~CL~Cg~v~CgR--~~~~Ha   73 (76)
                      ...+|..|.....+     ..| .||.+.|+.  |...|.
T Consensus        14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~   52 (67)
T 1x4w_A           14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHD   52 (67)
T ss_dssp             CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGT
T ss_pred             cCCcchhhCCeecccccCceEe-cCCCEehhccCCccccC
Confidence            46789999988877     479 999999994  666774

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=85.40  E-value=0.62  Score=27.63  Aligned_cols=32  Identities=28%  Similarity=0.713  Sum_probs=24.8

Q ss_pred             CccccCcCCCCCCe--eeecccCceeecC--CCcchh
Q psy14516         41 VKAPCVDCASVAEN--WVCLICYQVRCGR--YIEEHS   73 (76)
Q Consensus        41 ~~~~C~~C~~~~~~--W~CL~Cg~v~CgR--~~~~Ha   73 (76)
                      ...+|..|.....+  ..| .||.++|+.  |...|.
T Consensus        24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~HRy~e~H~   59 (74)
T 1wfp_A           24 TATRCLSCNKKVGVTGFKC-RCGSTFCGTHRYPESHE   59 (74)
T ss_dssp             CCCBCSSSCCBCTTTCEEC-TTSCEECTTTCSTTTSC
T ss_pred             cCccchhhcCcccccceEe-ccCCEeccccCCCcCCC
Confidence            56789999876554  779 899999995  666663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d2g45a1	113	g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h	4e-06
d2uzga1	95	g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy	6e-06
d2idaa1	102	g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R	2e-04

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 4e-06
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
          C  C      W+ L    + CGR   + S
Sbjct: 27 CSKCDMRENLWLNLTDGSILCGRRYFDGS 55

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 6e-06
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 24 DCPHTPLVAPVPQSGVDVKA--PCVDCASVAEN-WVCL--ICYQVRCGRYIEEHSNE 75
           CPH   V  + +  +  K+   C DC     N W CL   C  V CG    +HS  
Sbjct: 3  HCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTI 59

>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Hypothetical protein RPA1320
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 9/56 (16%)

Query: 25 CPHTPLVAPVPQSGVDVKAPCVDCASVAENWV----CLICYQVRC-GRYIEEHSNE 75
          C H   +  V  S       C +C  +   WV    C  C  V C      +H+  
Sbjct: 5  CRHVAGIRTVTPSA----LGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATR 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d2g45a1	113	Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum	99.53
d2uzga1	95	Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H	99.47
d2idaa1	102	Hypothetical protein RPA1320 {Rhodopseudomonas pal	99.4
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	88.52
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	86.75
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	81.59
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	81.58

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-15  Score=96.14  Aligned_cols=54  Identities=19%  Similarity=0.343  Sum_probs=44.5

Q ss_pred             CCCCCccCcccCCCC-CC-CCccccCcCCCCCCeeeecccCceeecCCC------cchhccC
Q psy14516         23 ADCPHTPLVAPVPQS-GV-DVKAPCVDCASVAENWVCLICYQVRCGRYI------EEHSNEF   76 (76)
Q Consensus        23 ~~CpHl~~l~~~~~~-~~-~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~------~~Ha~~H   76 (76)
                      ..|+|+..|.++... .+ +..++|.+|+...++|+||+||+||||||.      ++||++|
T Consensus         3 ~~~~h~~~l~q~~~~~~~~p~~~~C~~C~~~~~lWlCL~CG~vgCgR~~~~~~~~~~HA~~H   64 (113)
T d2g45a1           3 QVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH   64 (113)
T ss_dssp             EECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHH
T ss_pred             ccChhhcchhhccCCccCCCCCCcccCCCCcCCEEEEecCCCCccCcccccCCCCChHHHHH
Confidence            358999988764322 22 467889999999999999999999999974      8999887

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.4e-15  Score=93.80  Aligned_cols=54  Identities=30%  Similarity=0.678  Sum_probs=43.8

Q ss_pred             CCCCCccCcccCCCCCC--CCccccCcCCCCC-Ceeeecc--cCceeecCCCcchhccC
Q psy14516         23 ADCPHTPLVAPVPQSGV--DVKAPCVDCASVA-ENWVCLI--CYQVRCGRYIEEHSNEF   76 (76)
Q Consensus        23 ~~CpHl~~l~~~~~~~~--~~~~~C~~C~~~~-~~W~CL~--Cg~v~CgR~~~~Ha~~H   76 (76)
                      ..|||+..+..++...+  ...+.|.+|.... ++|+||+  ||++|||||.++||++|
T Consensus         2 ~~CpHl~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H   60 (95)
T d2uzga1           2 NHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIH   60 (95)
T ss_dssp             CSCHHHHHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHH
T ss_pred             CCCCCcChhhhcchhhhcCcCCCeeecCCCCCCCEEEeccccCCcEEccCCcCcHHHHH
Confidence            58999998765443322  3667899999874 6899995  99999999999999987

>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Hypothetical protein RPA1320
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.40  E-value=1.2e-14  Score=90.81  Aligned_cols=50  Identities=22%  Similarity=0.604  Sum_probs=42.5

Q ss_pred             CCCCCccCcccCCCCCCCCccccCcCCCCCCee----eecccCceeec-CCCcchhccC
Q psy14516         23 ADCPHTPLVAPVPQSGVDVKAPCVDCASVAENW----VCLICYQVRCG-RYIEEHSNEF   76 (76)
Q Consensus        23 ~~CpHl~~l~~~~~~~~~~~~~C~~C~~~~~~W----~CL~Cg~v~Cg-R~~~~Ha~~H   76 (76)
                      ..|||+..++.+++    ..+.|.+|+...++|    +||+||++||+ |+.++||++|
T Consensus         3 ~~C~Hl~~~~~~~p----~~~~C~~C~~~~~~W~~L~lCL~CG~vgC~~~~~~~Ha~~H   57 (102)
T d2idaa1           3 MGCRHVAGIRTVTP----SALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRH   57 (102)
T ss_dssp             CCCGGGGGCCCCCC----SSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHH
T ss_pred             CCCcCccccccCCC----CCCCcccccCCCCcccccccccccCCEecCCCCcccHHHHH
Confidence            47999988776554    457799999999988    59999999995 7899999987

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=88.52  E-value=0.11  Score=25.74  Aligned_cols=16  Identities=25%  Similarity=0.536  Sum_probs=13.5

Q ss_pred             CCeeeecccCceeecC
Q psy14516         52 AENWVCLICYQVRCGR   67 (76)
Q Consensus        52 ~~~W~CL~Cg~v~CgR   67 (76)
                      ...|+|+.||++.=|.
T Consensus         3 ~~~~vC~vCGyi~~g~   18 (36)
T d1yuza2           3 DKFHLCPICGYIHKGE   18 (36)
T ss_dssp             CCEEECSSSCCEEESS
T ss_pred             CCEEECCCCCCEeeCC
Confidence            5789999999998774

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.75  E-value=0.15  Score=25.21  Aligned_cols=17  Identities=18%  Similarity=0.546  Sum_probs=13.5

Q ss_pred             CCCeeeecccCceeecC
Q psy14516         51 VAENWVCLICYQVRCGR   67 (76)
Q Consensus        51 ~~~~W~CL~Cg~v~CgR   67 (76)
                      ....|+|..||++.=|.
T Consensus         2 ~~~~~~C~vCG~i~~g~   18 (37)
T d1nnqa2           2 IKKVYICPICGYTAVDE   18 (37)
T ss_dssp             CSCEEECTTTCCEEESC
T ss_pred             CCcEEECCCCCCEecCC
Confidence            35789999999987664

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.59  E-value=0.36  Score=28.83  Aligned_cols=28  Identities=18%  Similarity=0.432  Sum_probs=24.9

Q ss_pred             CCccccCcCCCCCCeeeecccCceeecC
Q psy14516         40 DVKAPCVDCASVAENWVCLICYQVRCGR   67 (76)
Q Consensus        40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR   67 (76)
                      +....|.+|+...-.|+++.-|..-|.+
T Consensus        13 p~N~~CaDC~~~~p~w~s~n~GvfvC~~   40 (122)
T d1dcqa2          13 TGNDVCCDCGAPDPTWLSTNLGILTCIE   40 (122)
T ss_dssp             TTTTBCTTTCCBSCCEEETTTTEEECHH
T ss_pred             CCCCccCCCCCCCCCeEEecCCEEEchh
Confidence            4667899999999999999999998875

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=81.58  E-value=0.28  Score=25.16  Aligned_cols=15  Identities=33%  Similarity=0.724  Sum_probs=13.2

Q ss_pred             CeeeecccCceeecC
Q psy14516         53 ENWVCLICYQVRCGR   67 (76)
Q Consensus        53 ~~W~CL~Cg~v~CgR   67 (76)
                      ..|+|+.||++.-|.
T Consensus         7 ~~W~C~~CGyi~~g~   21 (44)
T d1lkoa2           7 TKWRCRNCGYVHEGT   21 (44)
T ss_dssp             EEEEETTTCCEEEEE
T ss_pred             eEEEcCCCCcEEECC
Confidence            479999999999875