Psyllid ID: psy14534
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 423 | 2.2.26 [Sep-21-2011] | |||||||
| P21520 | 799 | Protein scabrous OS=Droso | yes | N/A | 0.874 | 0.463 | 0.414 | 7e-85 | |
| Q00546 | 1353 | Tenascin-R OS=Gallus gall | yes | N/A | 0.437 | 0.136 | 0.392 | 3e-37 | |
| P10039 | 1808 | Tenascin OS=Gallus gallus | no | N/A | 0.437 | 0.102 | 0.387 | 1e-36 | |
| P22105 | 4289 | Tenascin-X OS=Homo sapien | no | N/A | 0.401 | 0.039 | 0.408 | 5e-36 | |
| Q92752 | 1358 | Tenascin-R OS=Homo sapien | no | N/A | 0.437 | 0.136 | 0.387 | 1e-35 | |
| Q05546 | 1356 | Tenascin-R OS=Rattus norv | yes | N/A | 0.437 | 0.136 | 0.382 | 2e-35 | |
| Q8BYI9 | 1358 | Tenascin-R OS=Mus musculu | no | N/A | 0.437 | 0.136 | 0.373 | 9e-35 | |
| Q29116 | 1746 | Tenascin OS=Sus scrofa GN | no | N/A | 0.494 | 0.119 | 0.346 | 5e-34 | |
| Q8R0Z6 | 457 | Angiopoietin-related prot | no | N/A | 0.387 | 0.358 | 0.402 | 5e-34 | |
| Q80YX1 | 2110 | Tenascin OS=Mus musculus | no | N/A | 0.378 | 0.075 | 0.389 | 4e-33 |
| >sp|P21520|SCA_DROME Protein scabrous OS=Drosophila melanogaster GN=sca PE=2 SV=3 | Back alignment and function desciption |
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Score = 314 bits (805), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 240/388 (61%), Gaps = 18/388 (4%)
Query: 46 ILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQRE 105
I +R+ +E FN++ QI+ ++ LH+SM+ELLE +E ++ K+D ++P ++ E
Sbjct: 352 IDERVRSIEVEQHRIANANFNLSSQIASLDKLHTSMLELLEDVEGLQTKMDKSIPELRHE 411
Query: 106 ISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALS-DANYL 164
ISKLEF AQI S ++ E + A L++ +++ LQE+ E M+ LS + + L
Sbjct: 412 ISKLEFANAQITSEQSLIREEGTNAARSLQAMAVSVSVLQEEREG----MRKLSANVDQL 467
Query: 165 KSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQL--DDSK--NLSPETIMQQMNKI 220
++ V L +L N + + R ++ +Q+ DDS ++ ET++ ++ +
Sbjct: 468 RTNVDRLQSLVNDEMKNKLTHLNKPHKRPHHQNVQAQMPQDDSPIDSVLAETLVSELENV 527
Query: 221 HDSYLQVVGKLPNDC-EGHS---GLQLISLG--RSVL---CDEHHWMTIQRRYNGMQEFN 271
Y ++ KLP+DC E H+ GL LI+ R L C W T+QRR++G +FN
Sbjct: 528 ETQYEAIINKLPHDCSEVHTQTDGLHLIAPAGQRHPLMTHCTADGWTTVQRRFDGSADFN 587
Query: 272 LKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASES 331
W DYAQGFG+P EFWIGN+ LH LT + L+++ DIY W AEY F ++S +
Sbjct: 588 RSWADYAQGFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRA 647
Query: 332 EGYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNG 391
+GYRL+++ Y GNASDA+ YQ M+FS ID D D+S THCA+NYEGGWWFSHC HANLNG
Sbjct: 648 DGYRLHIAEYSGNASDALNYQQGMQFSAIDDDRDISQTHCAANYEGGWWFSHCQHANLNG 707
Query: 392 KFNLGLTWFHSEKNEWMAVARSHMKIRR 419
++NLGLTWF + +NEW+AV S M ++R
Sbjct: 708 RYNLGLTWFDAARNEWIAVKSSRMLVKR 735
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Involved in regulation of neurogenesis. May encode a lateral inhibitor of R8 differentiation. In conjunction with Gp150, promotes Notch activation in response to Delta by regulating acquisition of insensitivity to Delta in a subset of cells. Drosophila melanogaster (taxid: 7227) |
| >sp|Q00546|TENR_CHICK Tenascin-R OS=Gallus gallus GN=TNR PE=1 SV=1 | Back alignment and function description |
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| >sp|P10039|TENA_CHICK Tenascin OS=Gallus gallus GN=TNC PE=1 SV=2 | Back alignment and function description |
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| >sp|P22105|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=3 | Back alignment and function description |
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| >sp|Q92752|TENR_HUMAN Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3 | Back alignment and function description |
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| >sp|Q05546|TENR_RAT Tenascin-R OS=Rattus norvegicus GN=Tnr PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8BYI9|TENR_MOUSE Tenascin-R OS=Mus musculus GN=Tnr PE=1 SV=2 | Back alignment and function description |
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| >sp|Q29116|TENA_PIG Tenascin OS=Sus scrofa GN=TNC PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8R0Z6|ANGL6_MOUSE Angiopoietin-related protein 6 OS=Mus musculus GN=Angptl6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q80YX1|TENA_MOUSE Tenascin OS=Mus musculus GN=Tnc PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 423 | ||||||
| 157125225 | 730 | scabrous protein [Aedes aegypti] gi|1088 | 0.962 | 0.557 | 0.413 | 4e-89 | |
| 170054379 | 530 | scabrous protein [Culex quinquefasciatus | 0.959 | 0.766 | 0.394 | 1e-88 | |
| 158286408 | 738 | AGAP007031-PA [Anopheles gambiae str. PE | 0.931 | 0.533 | 0.385 | 2e-86 | |
| 195333884 | 802 | GM21425 [Drosophila sechellia] gi|194125 | 0.957 | 0.504 | 0.392 | 2e-83 | |
| 91078308 | 475 | PREDICTED: similar to scabrous protein [ | 0.921 | 0.821 | 0.404 | 2e-83 | |
| 158402 | 774 | scabrous protein [Drosophila melanogaste | 0.957 | 0.523 | 0.392 | 4e-83 | |
| 28573403 | 799 | scabrous, isoform A [Drosophila melanoga | 0.874 | 0.463 | 0.414 | 5e-83 | |
| 195485207 | 809 | GE12496 [Drosophila yakuba] gi|194177096 | 0.874 | 0.457 | 0.412 | 6e-83 | |
| 195120946 | 751 | GI19309 [Drosophila mojavensis] gi|19391 | 0.964 | 0.543 | 0.393 | 1e-82 | |
| 194883530 | 806 | GG20337 [Drosophila erecta] gi|190659041 | 0.874 | 0.459 | 0.409 | 1e-82 |
| >gi|157125225|ref|XP_001660656.1| scabrous protein [Aedes aegypti] gi|108873713|gb|EAT37938.1| AAEL010131-PA [Aedes aegypti] | Back alignment and taxonomy information |
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Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 182/440 (41%), Positives = 260/440 (59%), Gaps = 33/440 (7%)
Query: 3 IEPILPDPRYRNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVK 62
+EP D R R+ + F + H LE +Q + ++ + N + R+ LE +
Sbjct: 246 VEP-EADHRMRHHRFFRQQLHELEVKQTAMKRQLNDI--FNHRMADRLRSLEIEQRRLAN 302
Query: 63 TLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQV 122
FNI++Q++ ++ LH SM+ELLE +E I+NK + LP I+REISK+EF AQI+S +
Sbjct: 303 ANFNISRQVASLDKLHGSMLELLEDVEGIQNKFEKTLPDIKREISKVEFNAAQISSEQGL 362
Query: 123 VNETRESDANYLKSTVSTLATLQEKVEANNIIMQAL----SDANYLKSTVSTLATLQEKV 178
+ E + A +++ +++TLQE+ E + + L SD + +KS A + K
Sbjct: 363 LREEGHNVAKSIQAMAVSVSTLQEERENVRKLEEQLQVMKSDLDKIKS-----AAMLHKE 417
Query: 179 EANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVVGKLPNDCEGH 238
A+N + + R+E ++SS+L + + S ++QQM + + Y ++ KLP DC
Sbjct: 418 MAHNRLEKLESESRTER-NVSSKLTELQRTS--RLVQQMETVENEYETIINKLPRDCTQI 474
Query: 239 SGLQ---------LISLGRSVLCDEHH---------WMTIQRRYNGMQEFNLKWTDYAQG 280
++ +L +HH W TIQRR +G +FN W DYA G
Sbjct: 475 QQMKSQGETGQGGEGNLYLIAPTGQHHPLMTQCFNEWTTIQRRQDGSVDFNRSWEDYANG 534
Query: 281 FGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSG 340
FGSP EFWIGN ALH LT+ + LRI DIY W+A+YD F + S +G+RL L+G
Sbjct: 535 FGSPAGEFWIGNQALHHLTNDNCSMLRIVMQDIYDNTWFADYDAFRIGSREDGFRLELAG 594
Query: 341 YHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTWF 400
Y+GNASDA YQN+M+FS ID D D+SNTHCA NYEGGWWFSHC HANLNG++NLGLTWF
Sbjct: 595 YNGNASDAFEYQNHMQFSAIDVDRDISNTHCAGNYEGGWWFSHCQHANLNGRYNLGLTWF 654
Query: 401 HSEKNEWMAVARSHMKIRRR 420
+ +NEW+AV SHM I RR
Sbjct: 655 DASRNEWIAVKSSHMMIARR 674
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Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170054379|ref|XP_001863102.1| scabrous protein [Culex quinquefasciatus] gi|167874708|gb|EDS38091.1| scabrous protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
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| >gi|158286408|ref|XP_565171.3| AGAP007031-PA [Anopheles gambiae str. PEST] gi|157020455|gb|EAL41889.3| AGAP007031-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|195333884|ref|XP_002033616.1| GM21425 [Drosophila sechellia] gi|194125586|gb|EDW47629.1| GM21425 [Drosophila sechellia] | Back alignment and taxonomy information |
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| >gi|91078308|ref|XP_972571.1| PREDICTED: similar to scabrous protein [Tribolium castaneum] gi|270004857|gb|EFA01305.1| scabrous [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|158402|gb|AAA28880.1| scabrous protein [Drosophila melanogaster] | Back alignment and taxonomy information |
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| >gi|28573403|ref|NP_476710.2| scabrous, isoform A [Drosophila melanogaster] gi|28573404|ref|NP_725230.2| scabrous, isoform B [Drosophila melanogaster] gi|37999914|sp|P21520.3|SCA_DROME RecName: Full=Protein scabrous; Flags: Precursor gi|21744279|gb|AAM76198.1| RE38281p [Drosophila melanogaster] gi|28380848|gb|AAF58455.2| scabrous, isoform A [Drosophila melanogaster] gi|28380849|gb|AAM68655.2| scabrous, isoform B [Drosophila melanogaster] gi|220957752|gb|ACL91419.1| sca-PA [synthetic construct] | Back alignment and taxonomy information |
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| >gi|195485207|ref|XP_002090995.1| GE12496 [Drosophila yakuba] gi|194177096|gb|EDW90707.1| GE12496 [Drosophila yakuba] | Back alignment and taxonomy information |
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| >gi|195120946|ref|XP_002004982.1| GI19309 [Drosophila mojavensis] gi|193910050|gb|EDW08917.1| GI19309 [Drosophila mojavensis] | Back alignment and taxonomy information |
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| >gi|194883530|ref|XP_001975854.1| GG20337 [Drosophila erecta] gi|190659041|gb|EDV56254.1| GG20337 [Drosophila erecta] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 423 | ||||||
| FB|FBgn0003326 | 799 | sca "scabrous" [Drosophila mel | 0.955 | 0.505 | 0.401 | 2.5e-81 | |
| UNIPROTKB|F1NPJ1 | 1353 | TNR "Tenascin-R" [Gallus gallu | 0.437 | 0.136 | 0.392 | 1.4e-36 | |
| UNIPROTKB|Q00546 | 1353 | TNR "Tenascin-R" [Gallus gallu | 0.437 | 0.136 | 0.392 | 1.4e-36 | |
| MGI|MGI:1917976 | 457 | Angptl6 "angiopoietin-like 6" | 0.375 | 0.347 | 0.413 | 1.7e-36 | |
| UNIPROTKB|E1BKN2 | 1358 | TNR "Uncharacterized protein" | 0.378 | 0.117 | 0.425 | 1e-35 | |
| UNIPROTKB|Q24K15 | 498 | ANGPT4 "Angiopoietin-4" [Bos t | 0.338 | 0.287 | 0.46 | 2.5e-35 | |
| UNIPROTKB|B2Z4B2 | 498 | ANGPTL4 "Angiopoietin-4" [Bos | 0.338 | 0.287 | 0.46 | 3.1e-35 | |
| UNIPROTKB|F1N8F4 | 1808 | TNC "Tenascin" [Gallus gallus | 0.378 | 0.088 | 0.413 | 5e-35 | |
| UNIPROTKB|P10039 | 1808 | TNC "Tenascin" [Gallus gallus | 0.378 | 0.088 | 0.413 | 5e-35 | |
| MGI|MGI:3605801 | 337 | Angptl7 "angiopoietin-like 7" | 0.654 | 0.821 | 0.340 | 5e-35 |
| FB|FBgn0003326 sca "scabrous" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 171/426 (40%), Positives = 258/426 (60%)
Query: 9 DPRYRNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT 68
D + R+ + + H L+ Q + ++ L+ I +R+ +E FN++
Sbjct: 317 DHKRRHCRFQSEQIHQLQLAQRNLRRQVNGLRF--HHIDERVRSIEVEQHRIANANFNLS 374
Query: 69 KQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRE 128
QI+ ++ LH+SM+ELLE +E ++ K+D ++P ++ EISKLEF AQI S ++ E
Sbjct: 375 SQIASLDKLHTSMLELLEDVEGLQTKMDKSIPELRHEISKLEFANAQITSEQSLIREEGT 434
Query: 129 SDANYLKSTVSTLATLQEKVEANNIIMQALS-DANYLKSTVSTLATLQEKVEANNIIMQA 187
+ A L++ +++ LQE+ E M+ LS + + L++ V L +L N +
Sbjct: 435 NAARSLQAMAVSVSVLQEEREG----MRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLN 490
Query: 188 LRNGRSEGLSLSSQL--DDSK--NLSPETIMQQMNKIHDSYLQVVGKLPNDC-EGHS--- 239
+ R ++ +Q+ DDS ++ ET++ ++ + Y ++ KLP+DC E H+
Sbjct: 491 KPHKRPHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEVHTQTD 550
Query: 240 GLQLIS-LG-RSVL---CDEHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDA 294
GL LI+ G R L C W T+QRR++G +FN W DYAQGFG+P EFWIGN+
Sbjct: 551 GLHLIAPAGQRHPLMTHCTADGWTTVQRRFDGSADFNRSWADYAQGFGAPGGEFWIGNEQ 610
Query: 295 LHRLTSQDNMS-LRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTYQN 353
LH LT DN S L+++ DIY W AEY F ++S ++GYRL+++ Y GNASDA+ YQ
Sbjct: 611 LHHLTL-DNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASDALNYQQ 669
Query: 354 NMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTWFHSEKNEWMAVARS 413
M+FS ID D D+S THCA+NYEGGWWFSHC HANLNG++NLGLTWF + +NEW+AV S
Sbjct: 670 GMQFSAIDDDRDISQTHCAANYEGGWWFSHCQHANLNGRYNLGLTWFDAARNEWIAVKSS 729
Query: 414 HMKIRR 419
M ++R
Sbjct: 730 RMLVKR 735
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| UNIPROTKB|F1NPJ1 TNR "Tenascin-R" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q00546 TNR "Tenascin-R" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1917976 Angptl6 "angiopoietin-like 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BKN2 TNR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q24K15 ANGPT4 "Angiopoietin-4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B2Z4B2 ANGPTL4 "Angiopoietin-4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N8F4 TNC "Tenascin" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P10039 TNC "Tenascin" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:3605801 Angptl7 "angiopoietin-like 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 423 | |||
| cd00087 | 215 | cd00087, FReD, Fibrinogen-related domains (FReDs); | 9e-78 | |
| smart00186 | 212 | smart00186, FBG, Fibrinogen-related domains (FReDs | 1e-72 | |
| pfam00147 | 221 | pfam00147, Fibrinogen_C, Fibrinogen beta and gamma | 3e-57 | |
| pfam04582 | 326 | pfam04582, Reo_sigmaC, Reovirus sigma C capsid pro | 0.003 |
| >gnl|CDD|238040 cd00087, FReD, Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 9e-78
Identities = 89/216 (41%), Positives = 117/216 (54%), Gaps = 26/216 (12%)
Query: 230 KLPNDC-------EGHSGLQLISL-----GRSVLCDEHH----WMTIQRRYNGMQEFNLK 273
LP DC SG+ I V CD W IQRR +G +F
Sbjct: 1 PLPRDCSEVLQRGGRTSGVYTIQPPGSNEPFQVYCDMDTDGGGWTVIQRRGDGSVDFYRS 60
Query: 274 WTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEG 333
W +Y GFG+ + EFW+G + +H LTSQ LRI+ D G YAEYD+F V SESEG
Sbjct: 61 WKEYKDGFGNLDGEFWLGLEKIHLLTSQGPYELRIDLEDWEGNTAYAEYDSFKVGSESEG 120
Query: 334 YRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKF 393
YRL L GY G A DA++Y N MKFST DRDND ++ +CA +Y GGWW++ C +NLNG++
Sbjct: 121 YRLTLGGYSGTAGDALSYHNGMKFSTFDRDNDGASGNCAESYSGGWWYNSCHASNLNGRY 180
Query: 394 N---------LGLTWFHSEKNEWMAVARSHMKIRRR 420
G+ W + K ++ + MKIR +
Sbjct: 181 YSGGHRNEYDNGINW-ATWKGSTYSLKFTEMKIRPK 215
|
Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular arrangement called the disulfide knot. The C termini of fibrinogen chains end in globular domains, which are not completely equivalent. C terminal globular domains of the gamma chains (C-gamma) dimerize and bind to the GPR motif of the N-terminal domain of the alpha chain, while the GHR motif of N-terminal domain of the beta chain binds to the C terminal globular domains of another beta chain (C-beta), which leads to lattice formation. Length = 215 |
| >gnl|CDD|214548 smart00186, FBG, Fibrinogen-related domains (FReDs) | Back alignment and domain information |
|---|
| >gnl|CDD|215748 pfam00147, Fibrinogen_C, Fibrinogen beta and gamma chains, C-terminal globular domain | Back alignment and domain information |
|---|
| >gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 423 | |||
| smart00186 | 212 | FBG Fibrinogen-related domains (FReDs). Domain pre | 100.0 | |
| cd00087 | 215 | FReD Fibrinogen-related domains (FReDs); C termina | 100.0 | |
| KOG2579|consensus | 338 | 100.0 | ||
| PF00147 | 235 | Fibrinogen_C: Fibrinogen beta and gamma chains, C- | 100.0 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 96.41 | |
| KOG0971|consensus | 1243 | 96.33 | ||
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 96.18 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 96.13 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 96.12 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 96.0 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 95.86 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.85 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 95.75 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 95.69 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 95.65 | |
| KOG0161|consensus | 1930 | 95.59 | ||
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 95.58 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 95.45 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.27 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 95.19 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 94.98 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 94.96 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 94.87 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 94.85 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 94.83 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 94.66 | |
| KOG0161|consensus | 1930 | 94.63 | ||
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 94.55 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 94.46 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 94.44 | |
| KOG1029|consensus | 1118 | 94.29 | ||
| KOG0250|consensus | 1074 | 94.21 | ||
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.12 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 94.11 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 94.07 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 94.04 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 93.9 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 93.82 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 93.82 | |
| KOG0250|consensus | 1074 | 93.79 | ||
| KOG0964|consensus | 1200 | 93.76 | ||
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 93.54 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 93.43 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 93.39 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 93.37 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 93.16 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 93.1 | |
| KOG0995|consensus | 581 | 92.55 | ||
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 92.48 | |
| KOG4643|consensus | 1195 | 92.29 | ||
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 92.16 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 92.12 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 91.95 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 91.9 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 91.5 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 91.27 | |
| KOG1937|consensus | 521 | 91.24 | ||
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 91.11 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 91.11 | |
| PF04899 | 70 | MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th | 90.64 | |
| KOG0996|consensus | 1293 | 90.62 | ||
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 90.61 | |
| PF04912 | 388 | Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit | 90.6 | |
| KOG0964|consensus | 1200 | 90.55 | ||
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 90.44 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 90.36 | |
| PF04100 | 383 | Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 | 90.34 | |
| KOG0994|consensus | 1758 | 90.33 | ||
| KOG2180|consensus | 793 | 90.25 | ||
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 90.12 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 90.07 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 90.06 | |
| KOG0976|consensus | 1265 | 89.92 | ||
| PF04582 | 326 | Reo_sigmaC: Reovirus sigma C capsid protein; Inter | 89.89 | |
| KOG0579|consensus | 1187 | 89.89 | ||
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 89.79 | |
| PF04582 | 326 | Reo_sigmaC: Reovirus sigma C capsid protein; Inter | 89.76 | |
| KOG0977|consensus | 546 | 89.59 | ||
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 89.55 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 89.53 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 89.38 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 89.28 | |
| KOG0999|consensus | 772 | 89.24 | ||
| KOG4674|consensus | 1822 | 89.04 | ||
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 88.9 | |
| KOG0612|consensus | 1317 | 88.88 | ||
| KOG0978|consensus | 698 | 88.46 | ||
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 88.17 | |
| PRK09039 | 343 | hypothetical protein; Validated | 87.98 | |
| KOG2196|consensus | 254 | 87.78 | ||
| KOG0018|consensus | 1141 | 87.46 | ||
| TIGR02338 | 110 | gimC_beta prefoldin, beta subunit, archaeal. Chape | 87.43 | |
| PRK11820 | 288 | hypothetical protein; Provisional | 87.18 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 87.16 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 86.99 | |
| PF01410 | 214 | COLFI: Fibrillar collagen C-terminal domain; Inter | 86.63 | |
| KOG0980|consensus | 980 | 85.87 | ||
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 85.78 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 85.64 | |
| KOG0995|consensus | 581 | 85.52 | ||
| KOG3850|consensus | 455 | 85.48 | ||
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 85.4 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 85.38 | |
| COG1561 | 290 | Uncharacterized stress-induced protein [Function u | 85.29 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 85.17 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 85.07 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 84.74 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 84.5 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 84.25 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 84.17 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 84.12 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 83.88 | |
| cd00632 | 105 | Prefoldin_beta Prefoldin beta; Prefoldin is a hexa | 83.85 | |
| PF04912 | 388 | Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit | 83.83 | |
| KOG0612|consensus | 1317 | 83.64 | ||
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 83.57 | |
| KOG0996|consensus | 1293 | 83.46 | ||
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 83.34 | |
| PF03148 | 384 | Tektin: Tektin family; InterPro: IPR000435 Tektin | 83.24 | |
| KOG4674|consensus | 1822 | 83.12 | ||
| PF04740 | 204 | LXG: LXG domain of WXG superfamily; InterPro: IPR0 | 82.79 | |
| KOG0933|consensus | 1174 | 82.3 | ||
| KOG0994|consensus | 1758 | 81.96 | ||
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 81.64 | |
| KOG0976|consensus | 1265 | 81.05 | ||
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 80.98 | |
| COG0497 | 557 | RecN ATPase involved in DNA repair [DNA replicatio | 80.94 | |
| PF13166 | 712 | AAA_13: AAA domain | 80.83 | |
| PF10267 | 395 | Tmemb_cc2: Predicted transmembrane and coiled-coil | 80.77 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 80.76 | |
| TIGR01000 | 457 | bacteriocin_acc bacteriocin secretion accessory pr | 80.72 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 80.33 |
| >smart00186 FBG Fibrinogen-related domains (FReDs) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-71 Score=523.08 Aligned_cols=189 Identities=47% Similarity=0.926 Sum_probs=177.9
Q ss_pred CCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCCCccccccchh
Q psy14534 231 LPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDA 294 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGLe~ 294 (423)
+|+||. ..||||+|.|+. .||||| +||||||||.||+|+|+|+|++|++|||++.||||||||+
T Consensus 1 ~p~~C~~~~~~g~~~sGvy~I~~~~~~~p~~v~Cd~~~~GgGWtVIQrR~dGsv~F~R~W~eY~~GFG~~~gefWlGLe~ 80 (212)
T smart00186 1 LPRDCSDVLQNGGKTSGLYTIYPDGSSRPLKVYCDMETDGGGWTVIQRRMDGSVDFYRDWKDYKEGFGNLAGEFWLGNEN 80 (212)
T ss_pred CCcChHHHHhcCCCCCceEEEeCCCCCCcEEEEeEEecCCCcEEEEEEeccCCCCCcccHHHHHHhhCCCCCCEEecchh
Confidence 588998 369999999864 379997 5899999999999999999999999999999999999999
Q ss_pred hhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCC-ccCcCCCCCCCcccCCCCCCCCCCCC
Q psy14534 295 LHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASD-AMTYQNNMKFSTIDRDNDLSNTHCAS 373 (423)
Q Consensus 295 ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agD-sl~~hng~~FST~DrDnD~~~~nCA~ 373 (423)
||+||++++|+|+|+|+|++|...||+|+.|+|++|+++|+|+||+|+|+||| +|++|+|++|||+|+|||....|||.
T Consensus 81 ih~LT~~~~~eL~I~l~d~~g~~~~a~Y~~F~vg~e~~~Y~L~lg~y~G~agd~sl~~~~g~~FsT~D~dnd~~~~nCa~ 160 (212)
T smart00186 81 IHLLTSQGKYELRIDLEDWEGNTAYALYDSFKVADEADGYRLHIGGYSGTAGDASLTYHNGMQFSTYDRDNDKYSGNCAE 160 (212)
T ss_pred hhhhhccCceEEEEEEecCCCCEEEEEeeEEEecCcccceEEEEEeecCCccccccceeCCcEeeccCccCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999 69999999999999999987789999
Q ss_pred ccCCcccccCCCcCCCCCCCC------CCceeccCCCCceeeeceEEEEeeec
Q psy14534 374 NYEGGWWFSHCLHANLNGKFN------LGLTWFHSEKNEWMAVARSHMKIRRR 420 (423)
Q Consensus 374 ~~~GGWWy~~C~~sNLNG~Y~------~Gi~W~~~~~~~~~slk~~~M~IRp~ 420 (423)
.+.|||||+.|+.|||||+|. .||.|..+. +..++||+|+|||||.
T Consensus 161 ~~~gGWWy~~C~~sNLNG~y~~~~~~~~Gi~W~~~~-g~~~slk~~~MmIRp~ 212 (212)
T smart00186 161 EYGGGWWYNNCHAANLNGRYYPNNNYDNGINWATWK-GSWYSLKFTEMKIRPL 212 (212)
T ss_pred CCCCCEeCCCCCCcCCcccccCCCCCCCEEEEccCC-CcceeeeeEEEEEeeC
Confidence 999999999999999999996 389998774 4578999999999994
|
Domain present at the C-termini of fibrinogen beta and gamma chains, and a variety of fibrinogen-related proteins, including tenascin and Drosophila scabrous. |
| >cd00087 FReD Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen | Back alignment and domain information |
|---|
| >KOG2579|consensus | Back alignment and domain information |
|---|
| >PF00147 Fibrinogen_C: Fibrinogen beta and gamma chains, C-terminal globular domain Fibrinopeptides not included | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG0971|consensus | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >KOG0964|consensus | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >KOG4643|consensus | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >KOG1937|consensus | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [] | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] | Back alignment and domain information |
|---|
| >KOG0964|consensus | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >KOG2180|consensus | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >KOG0976|consensus | Back alignment and domain information |
|---|
| >PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer | Back alignment and domain information |
|---|
| >KOG0579|consensus | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer | Back alignment and domain information |
|---|
| >KOG0977|consensus | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
| >KOG0999|consensus | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0612|consensus | Back alignment and domain information |
|---|
| >KOG0978|consensus | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG2196|consensus | Back alignment and domain information |
|---|
| >KOG0018|consensus | Back alignment and domain information |
|---|
| >TIGR02338 gimC_beta prefoldin, beta subunit, archaeal | Back alignment and domain information |
|---|
| >PRK11820 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF01410 COLFI: Fibrillar collagen C-terminal domain; InterPro: IPR000885 Collagens contain a large number of globular domains in between the regions of triple helical repeats IPR008160 from INTERPRO | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >KOG3850|consensus | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >COG1561 Uncharacterized stress-induced protein [Function unknown] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea | Back alignment and domain information |
|---|
| >PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] | Back alignment and domain information |
|---|
| >KOG0612|consensus | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >KOG0976|consensus | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 423 | ||||
| 2j3f_D | 219 | L-Ficolin Complexed To N-Acetyl-D-Galactosamine Len | 3e-32 | ||
| 2d39_A | 237 | Trivalent Recognition Unit Of Innate Immunity Syste | 3e-32 | ||
| 2wnp_F | 217 | M-Ficolin Mutant Y271f Length = 217 | 7e-32 | ||
| 2j3f_A | 219 | L-Ficolin Complexed To N-Acetyl-D-Galactosamine Len | 2e-31 | ||
| 2jhi_F | 218 | Structure Of Globular Heads Of M-Ficolin Complexed | 2e-31 | ||
| 2j0g_A | 218 | L-Ficolin Complexed To N-Acetyl-Mannosamine Length | 2e-31 | ||
| 2jhh_C | 218 | Structure Of Globular Heads Of M-Ficolin At Acidic | 2e-31 | ||
| 2j61_A | 218 | L-ficolin Complexed To N-acetylglucosamine (forme C | 2e-31 | ||
| 1fzd_A | 201 | Structure Of Recombinant Alphaec Domain From Human | 2e-30 | ||
| 2j5z_A | 221 | H-Ficolin Complexed To Galactose Length = 221 | 3e-28 | ||
| 1ei3_C | 409 | Crystal Structure Of Native Chicken Fibrinogen Leng | 8e-26 | ||
| 1m1j_C | 409 | Crystal Structure Of Native Chicken Fibrinogen With | 1e-25 | ||
| 1jc9_A | 269 | Tachylectin 5a From Tachypleus Tridentatus (Japanes | 3e-25 | ||
| 3ghg_C | 411 | Crystal Structure Of Human Fibrinogen Length = 411 | 8e-24 | ||
| 1deq_E | 408 | The Crystal Structure Of Modified Bovine Fibrinogen | 7e-23 | ||
| 1lwu_B | 323 | Crystal Structure Of Fragment D From Lamprey Fibrin | 9e-23 | ||
| 2gy7_A | 216 | Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE Length | 1e-22 | ||
| 1z3s_A | 217 | Angiopoietin-2 Receptor Binding Domain Length = 217 | 1e-22 | ||
| 3ghg_B | 461 | Crystal Structure Of Human Fibrinogen Length = 461 | 1e-22 | ||
| 3h32_B | 458 | Crystal Structure Of D-Dimer From Human Fibrin Comp | 2e-22 | ||
| 1deq_F | 411 | The Crystal Structure Of Modified Bovine Fibrinogen | 2e-22 | ||
| 1z3u_A | 217 | Structure Of The Angiopoietin-2 Recptor Binding Dom | 3e-22 | ||
| 1re3_B | 313 | Crystal Structure Of Fragment D Of Bbetad398a Fibri | 4e-22 | ||
| 3e1i_B | 328 | Crystal Structure Of Bbetad432a Variant Fibrinogen | 5e-22 | ||
| 1fza_B | 328 | Crystal Structure Of Fibrinogen Fragment D Length = | 5e-22 | ||
| 2z4e_B | 326 | Crystal Structure Of D-dimer From Human Fibrin Comp | 6e-22 | ||
| 1lt9_B | 313 | Crystal Structure Of Recombinant Human Fibrinogen F | 6e-22 | ||
| 1lwu_C | 323 | Crystal Structure Of Fragment D From Lamprey Fibrin | 1e-21 | ||
| 3bvh_B | 298 | Crystal Structure Of Recombinant Gammad364a Fibrino | 1e-21 | ||
| 1n73_C | 330 | Fibrin D-Dimer, Lamprey Complexed With The Peptide | 1e-21 | ||
| 1n86_C | 324 | Crystal Structure Of Human D-Dimer From Cross-Linke | 2e-21 | ||
| 1rf0_C | 311 | Crystal Structure Of Fragment D Of Gammae132a Fibri | 2e-21 | ||
| 1fza_C | 319 | Crystal Structure Of Fibrinogen Fragment D Length = | 2e-21 | ||
| 2h43_C | 323 | Crystal Structure Of Human Fragment D Complexed Wit | 2e-21 | ||
| 3bvh_C | 293 | Crystal Structure Of Recombinant Gammad364a Fibrino | 3e-21 | ||
| 1ei3_B | 464 | Crystal Structure Of Native Chicken Fibrinogen Leng | 3e-21 | ||
| 2oyh_C | 311 | Crystal Structure Of Fragment D Of Gammad298,301a F | 3e-21 | ||
| 1lt9_C | 311 | Crystal Structure Of Recombinant Human Fibrinogen F | 4e-21 | ||
| 3h32_C | 317 | Crystal Structure Of D-Dimer From Human Fibrin Comp | 4e-21 | ||
| 3hus_C | 311 | Crystal Structure Of Recombinant Gamma N308k Fibrin | 2e-20 | ||
| 1fic_A | 269 | Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl | 2e-20 | ||
| 3fib_A | 249 | Recombinant Human Gamma-fibrinogen Carboxyl Termina | 3e-20 |
| >pdb|2J3F|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Galactosamine Length = 219 | Back alignment and structure |
|
| >pdb|2D39|A Chain A, Trivalent Recognition Unit Of Innate Immunity System; Crystal Structure Of Human M-Ficolin Fibrinogen-Like Domain Length = 237 | Back alignment and structure |
| >pdb|2WNP|F Chain F, M-Ficolin Mutant Y271f Length = 217 | Back alignment and structure |
| >pdb|2J3F|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Galactosamine Length = 219 | Back alignment and structure |
| >pdb|2JHI|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N- Acetyl-D-Galactosamine Length = 218 | Back alignment and structure |
| >pdb|2J0G|A Chain A, L-Ficolin Complexed To N-Acetyl-Mannosamine Length = 218 | Back alignment and structure |
| >pdb|2JHH|C Chain C, Structure Of Globular Heads Of M-Ficolin At Acidic Ph Length = 218 | Back alignment and structure |
| >pdb|2J61|A Chain A, L-ficolin Complexed To N-acetylglucosamine (forme C) Length = 218 | Back alignment and structure |
| >pdb|1FZD|A Chain A, Structure Of Recombinant Alphaec Domain From Human Fibrinogen-420 Length = 201 | Back alignment and structure |
| >pdb|2J5Z|A Chain A, H-Ficolin Complexed To Galactose Length = 221 | Back alignment and structure |
| >pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fibrinogen Length = 409 | Back alignment and structure |
| >pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fibrinogen With Two Different Bound Ligands Length = 409 | Back alignment and structure |
| >pdb|1JC9|A Chain A, Tachylectin 5a From Tachypleus Tridentatus (Japanese Horseshoe Crab) Length = 269 | Back alignment and structure |
| >pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen Length = 411 | Back alignment and structure |
| >pdb|1LWU|B Chain B, Crystal Structure Of Fragment D From Lamprey Fibrinogen Complexed With The Peptide Gly-His-Arg-Pro-Amide Length = 323 | Back alignment and structure |
| >pdb|2GY7|A Chain A, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE Length = 216 | Back alignment and structure |
| >pdb|1Z3S|A Chain A, Angiopoietin-2 Receptor Binding Domain Length = 217 | Back alignment and structure |
| >pdb|3GHG|B Chain B, Crystal Structure Of Human Fibrinogen Length = 461 | Back alignment and structure |
| >pdb|3H32|B Chain B, Crystal Structure Of D-Dimer From Human Fibrin Complexed With Gly-His- Arg-Pro-Tyr-Amide Length = 458 | Back alignment and structure |
| >pdb|1Z3U|A Chain A, Structure Of The Angiopoietin-2 Recptor Binding Domain And Identification Of Surfaces Involved In Tie2 Recognition Length = 217 | Back alignment and structure |
| >pdb|1RE3|B Chain B, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen With The Peptide Ligand Gly-his-arg-pro-amide Length = 313 | Back alignment and structure |
| >pdb|3E1I|B Chain B, Crystal Structure Of Bbetad432a Variant Fibrinogen Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide Length = 328 | Back alignment and structure |
| >pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragment D Length = 328 | Back alignment and structure |
| >pdb|2Z4E|B Chain B, Crystal Structure Of D-dimer From Human Fibrin Complexed With Gly-his- Arg-pro-tyr-amide Length = 326 | Back alignment and structure |
| >pdb|1LT9|B Chain B, Crystal Structure Of Recombinant Human Fibrinogen Fragment D Length = 313 | Back alignment and structure |
| >pdb|1LWU|C Chain C, Crystal Structure Of Fragment D From Lamprey Fibrinogen Complexed With The Peptide Gly-His-Arg-Pro-Amide Length = 323 | Back alignment and structure |
| >pdb|3BVH|B Chain B, Crystal Structure Of Recombinant Gammad364a Fibrinogen Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide Length = 298 | Back alignment and structure |
| >pdb|1N73|C Chain C, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand: Gly-His- Arg-Pro-Amide Length = 330 | Back alignment and structure |
| >pdb|1N86|C Chain C, Crystal Structure Of Human D-Dimer From Cross-Linked Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands. Length = 324 | Back alignment and structure |
| >pdb|1RF0|C Chain C, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen Length = 311 | Back alignment and structure |
| >pdb|1FZA|C Chain C, Crystal Structure Of Fibrinogen Fragment D Length = 319 | Back alignment and structure |
| >pdb|2H43|C Chain C, Crystal Structure Of Human Fragment D Complexed With Ala-His-Arg-Pro- Amide Length = 323 | Back alignment and structure |
| >pdb|3BVH|C Chain C, Crystal Structure Of Recombinant Gammad364a Fibrinogen Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide Length = 293 | Back alignment and structure |
| >pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen Length = 464 | Back alignment and structure |
| >pdb|2OYH|C Chain C, Crystal Structure Of Fragment D Of Gammad298,301a Fibrinogen With The Peptide Ligand Gly-His-Arg-Pro-Amide Length = 311 | Back alignment and structure |
| >pdb|1LT9|C Chain C, Crystal Structure Of Recombinant Human Fibrinogen Fragment D Length = 311 | Back alignment and structure |
| >pdb|3H32|C Chain C, Crystal Structure Of D-Dimer From Human Fibrin Complexed With Gly-His- Arg-Pro-Tyr-Amide Length = 317 | Back alignment and structure |
| >pdb|3HUS|C Chain C, Crystal Structure Of Recombinant Gamma N308k Fibrinogen Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide Length = 311 | Back alignment and structure |
| >pdb|1FIC|A Chain A, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl Terminal Fragment Length = 269 | Back alignment and structure |
| >pdb|3FIB|A Chain A, Recombinant Human Gamma-fibrinogen Carboxyl Terminal Fragment (residues 143-411) Bound To Calcium At Ph 6.0: A Further Refinement Of Pdb Entry 1fib, And Differs From 1fib By The Modelling Of A Cis Peptide Bond Between Residues K338 And C339 Length = 249 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2j5z_A Ficolin-3; hydroxylation, alternative splicing, lectin, collagen, immunology, glycoprotein; HET: GAL; 1.73A {Homo sapiens} PDB: 2j60_A* 2j64_A Length = 221 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 2e-82
Identities = 71/213 (33%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 230 KLPNDCE-----GH--SGLQLISLGRS----VLCDEHH----WMTIQRRYNGMQEFNLKW 274
+ P +C G SG + L V CD W+ QRR +G +F W
Sbjct: 10 EGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSW 69
Query: 275 TDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGY 334
+ Y GFG+ ESEFW+GN+ LH+LT Q N LR+E D G +A Y TF + E + Y
Sbjct: 70 SSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHY 129
Query: 335 RLNLSGY-HGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGK- 392
+L L + G A D+++ + F+T D D+D SN++CA G WW++ C +NLNG+
Sbjct: 130 QLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRY 189
Query: 393 -------FNLGLTWFHSEKNEWMAVARSHMKIR 418
G+ W + R M +R
Sbjct: 190 AVSEAAAHKYGIDWASG-RGVGHPYRRVRMMLR 221
|
| >2d39_A Ficolin-1; innate immunity system, lectin pathway, immune system; 1.90A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
| >2wnp_F Ficolin-1; glycoprotein, innate immunity, fibrinogen-like domain, carbohydrate recognition, lectin, immune system; 1.21A {Homo sapiens} PDB: 2jhm_F 2jhl_F* 2jhh_C 2jhk_F* 2jhi_F* 2j3o_A* 2j3f_A* 2j1g_A* 2j0h_A* 2j0g_A* 2j0y_A* 2j2p_A* 2j3g_A* 2j3u_A* 2j61_B* 2j3f_D* 2j61_A* Length = 217 | Back alignment and structure |
|---|
| >1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET: NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1 Length = 269 | Back alignment and structure |
|---|
| >1z3u_A Angiopoietin-2, ANG-2; TIE2 binding, angiogenesis, extracellular ligand, signaling protein; 2.25A {Homo sapiens} PDB: 1z3s_A 2gy7_A* Length = 217 | Back alignment and structure |
|---|
| >3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411 | Back alignment and structure |
|---|
| >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409 | Back alignment and structure |
|---|
| >1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C* Length = 323 | Back alignment and structure |
|---|
| >1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ... Length = 319 | Back alignment and structure |
|---|
| >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Length = 461 | Back alignment and structure |
|---|
| >2fib_A Fibrinogen; fibrinogen, blood coagulation, fibrin polymerization, complex (blood coagulation/peptide); 2.01A {Homo sapiens} SCOP: d.171.1.1 PDB: 1fic_A 1fid_A 1fib_A 3fib_A Length = 269 | Back alignment and structure |
|---|
| >1fzd_A Fibrinogen-420; blood coagulation, alphaec domain, fibrinoge domain, glycosylated protein; HET: NAG MAN NDG; 2.10A {Homo sapiens} SCOP: d.171.1.1 Length = 201 | Back alignment and structure |
|---|
| >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464 | Back alignment and structure |
|---|
| >1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B* Length = 323 | Back alignment and structure |
|---|
| >1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ... Length = 328 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 423 | |||
| 3ghg_B | 461 | Fibrinogen beta chain; triple-stranded coiled coil | 100.0 | |
| 2wnp_F | 217 | Ficolin-1; glycoprotein, innate immunity, fibrinog | 100.0 | |
| 3ghg_C | 411 | Fibrinogen gamma chain; triple-stranded coiled coi | 100.0 | |
| 1m1j_B | 464 | Fibrinogen beta chain; coiled coils, disulfide rin | 100.0 | |
| 1lwu_B | 323 | Fibrinogen beta chain; heterotrimer, protein-pepti | 100.0 | |
| 1lwu_C | 323 | Fibrinogen gamma chain; heterotrimer, protein-pept | 100.0 | |
| 2d39_A | 237 | Ficolin-1; innate immunity system, lectin pathway, | 100.0 | |
| 1m1j_C | 409 | Fibrinogen gamma chain; coiled coils, disulfide ri | 100.0 | |
| 2j5z_A | 221 | Ficolin-3; hydroxylation, alternative splicing, le | 100.0 | |
| 1z3u_A | 217 | Angiopoietin-2, ANG-2; TIE2 binding, angiogenesis, | 100.0 | |
| 1fzc_C | 319 | Fibrin; blood coagulation, plasma protein, crossli | 100.0 | |
| 1fzc_B | 328 | Fibrin; blood coagulation, plasma protein, crossli | 100.0 | |
| 2fib_A | 269 | Fibrinogen; fibrinogen, blood coagulation, fibrin | 100.0 | |
| 1jc9_A | 269 | Techylectin-5A; fibrinogen related, sugar binding | 100.0 | |
| 1fzd_A | 201 | Fibrinogen-420; blood coagulation, alphaec domain, | 100.0 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 96.58 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 95.53 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 95.46 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 95.43 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 95.09 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 94.26 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 93.21 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 91.89 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 91.64 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 88.91 | |
| 4ae2_A | 256 | Procollagen III, collagen alpha-1(III) chain; stru | 88.39 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 87.91 | |
| 1deq_A | 390 | Fibrinogen (alpha chain); coiled-coil, blood clott | 87.6 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 86.3 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 85.68 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 85.09 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 85.05 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 84.99 | |
| 2jee_A | 81 | YIIU; FTSZ, septum, coiled-coil, cell division, ce | 84.4 |
| >3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-73 Score=584.30 Aligned_cols=190 Identities=38% Similarity=0.737 Sum_probs=177.3
Q ss_pred CCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCCC---------
Q psy14534 231 LPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPE--------- 285 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~--------- 285 (423)
.|+||. ..||+|+|+|.. .||||| +||||||||.||+|+|+|+|++|++|||++.
T Consensus 207 ~~rDC~di~~~G~~~SGvY~I~p~~~~~p~~VyCDm~t~GGGWTVIQrR~DGSvdF~R~W~eYk~GFG~~~~~~~g~~~~ 286 (461)
T 3ghg_B 207 SGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYC 286 (461)
T ss_dssp EESSHHHHHHTTCCSCSEEEECSCSSSCCEEEEEECSTTSSCEEEEEEESSSCSCCCCCHHHHHHEEECCEECCTTCSSC
T ss_pred CCCCHHHHHhcCCCCCceEEEEeCCCCCeEEEEeeeccCCCceEEEEeecccccCCCCcHHHHhhccCCccccccccccc
Confidence 357887 579999999964 389998 5899999999999999999999999999998
Q ss_pred ---ccccccchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCcc-------------
Q psy14534 286 ---SEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM------------- 349 (423)
Q Consensus 286 ---gEfWLGLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl------------- 349 (423)
||||||||+||+||++++|+|+|+|+||+|+..||.|+.|.|++|+++|+|+||+|+|+|||+|
T Consensus 287 ~~~gEfWLGlE~IH~LT~~~~~eLrIeLeD~~G~~~yA~Y~~F~Vg~E~~~Y~L~lg~YsGtAGDsl~~g~~~~~g~~~~ 366 (461)
T 3ghg_B 287 GLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRT 366 (461)
T ss_dssp CEECCEEECHHHHHHHHHTSCEEEEEEECCTTSCCEEEEEEEEEECCGGGTTCEEEEEEESSSCCCTTTCCTTSCHHHHT
T ss_pred CCCCceEecchHHHHhhcCCceEEEEEEEecCCCEEEEEeCcccCCCccCCeEEEEccccCCchhhhccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CcCCCCCCCcccCCCCCC-----CCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCcee
Q psy14534 350 -TYQNNMKFSTIDRDNDLS-----NTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWM 408 (423)
Q Consensus 350 -~~hng~~FST~DrDnD~~-----~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~ 408 (423)
++|+||+|||+|+|||.+ ..|||..+.|||||+.|+.|||||+|. .||.|+.| ++.||
T Consensus 367 ~~~hng~~FST~DrDND~~~~~d~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~g~~~~~~~~~~~~~~GI~W~~w-kG~~Y 445 (461)
T 3ghg_B 367 MTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNW-KGSWY 445 (461)
T ss_dssp TSCCTTCCCBBTTBCCCSCCCSCSSCCHHHHTCSCBCCSSBCSCBSSSCCCTTSBCCGGGSTTSSCCSSBCHHH-HCTTB
T ss_pred ccccCCCcccccccccccccccCccccccccCCCCCCCCCCCCCCCCCcccCCCCCcccccccCCCCceEeccC-CCCcc
Confidence 689999999999999975 379999999999999999999999985 38999987 45789
Q ss_pred eeceEEEEeeecC
Q psy14534 409 AVARSHMKIRRRQ 421 (423)
Q Consensus 409 slk~~~M~IRp~~ 421 (423)
|||+|+|||||+-
T Consensus 446 SLK~t~MkIRP~~ 458 (461)
T 3ghg_B 446 SMRKMSMKIRPFF 458 (461)
T ss_dssp CCSCEEEEEEECC
T ss_pred ceeeEEEEEeeCC
Confidence 9999999999964
|
| >2wnp_F Ficolin-1; glycoprotein, innate immunity, fibrinogen-like domain, carbohydrate recognition, lectin, immune system; 1.21A {Homo sapiens} PDB: 2jhm_F 2jhl_F* 2jhh_C 2jhk_F* 2jhi_F* 2j3o_A* 2j3f_A* 2j1g_A* 2j0h_A* 2j0g_A* 2j0y_A* 2j2p_A* 2j3g_A* 2j3u_A* 2j61_B* 2j3f_D* 2j61_A* | Back alignment and structure |
|---|
| >3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C | Back alignment and structure |
|---|
| >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* | Back alignment and structure |
|---|
| >1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B* | Back alignment and structure |
|---|
| >1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C* | Back alignment and structure |
|---|
| >2d39_A Ficolin-1; innate immunity system, lectin pathway, immune system; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C | Back alignment and structure |
|---|
| >2j5z_A Ficolin-3; hydroxylation, alternative splicing, lectin, collagen, immunology, glycoprotein; HET: GAL; 1.73A {Homo sapiens} PDB: 2j60_A* 2j64_A | Back alignment and structure |
|---|
| >1z3u_A Angiopoietin-2, ANG-2; TIE2 binding, angiogenesis, extracellular ligand, signaling protein; 2.25A {Homo sapiens} PDB: 1z3s_A 2gy7_A* | Back alignment and structure |
|---|
| >1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ... | Back alignment and structure |
|---|
| >1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ... | Back alignment and structure |
|---|
| >2fib_A Fibrinogen; fibrinogen, blood coagulation, fibrin polymerization, complex (blood coagulation/peptide); 2.01A {Homo sapiens} SCOP: d.171.1.1 PDB: 1fic_A 1fid_A 1fib_A 3fib_A | Back alignment and structure |
|---|
| >1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET: NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1 | Back alignment and structure |
|---|
| >1fzd_A Fibrinogen-420; blood coagulation, alphaec domain, fibrinoge domain, glycosylated protein; HET: NAG MAN NDG; 2.10A {Homo sapiens} SCOP: d.171.1.1 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >4ae2_A Procollagen III, collagen alpha-1(III) chain; structural protein, fibrillar collagen, extracellular matrix fibrosis; 1.68A {Homo sapiens} PDB: 4aej_A* 4ak3_A | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
| >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 423 | ||||
| d1lwub1 | 259 | d.171.1.1 (B:219-477) Fibrinogen C-terminal domain | 1e-45 | |
| d1re3b1 | 259 | d.171.1.1 (B:200-458) Fibrinogen C-terminal domain | 8e-45 | |
| d1fzda_ | 197 | d.171.1.1 (A:) Fibrinogen C-terminal domains {Huma | 4e-43 | |
| d1lwuc1 | 262 | d.171.1.1 (C:138-399) Fibrinogen C-terminal domain | 9e-43 | |
| d1jc9a_ | 220 | d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe | 1e-42 | |
| d1fida_ | 259 | d.171.1.1 (A:) Fibrinogen C-terminal domains {Huma | 6e-40 |
| >d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Fibrinogen C-terminal domain-like superfamily: Fibrinogen C-terminal domain-like family: Fibrinogen C-terminal domain-like domain: Fibrinogen C-terminal domains species: Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]
Score = 156 bits (395), Expect = 1e-45
Identities = 67/236 (28%), Positives = 97/236 (41%), Gaps = 55/236 (23%)
Query: 239 SGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSP----- 284
S I V CD W +Q R +G F W Y FG+
Sbjct: 25 SEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNG 84
Query: 285 ------ESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNL 338
E+W+G +H+LT Q + + D G + YA+Y +F +E++GYRL +
Sbjct: 85 KSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWV 144
Query: 339 SGYHGNASDA--------------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGW 379
Y GNA +A MT N M+FST DRDND HC+ GGW
Sbjct: 145 EDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGW 204
Query: 380 WFSHCLHANLNGKFNL---------------GLTWFHSEKNEWMAVARSHMKIRRR 420
W++ C AN NG++ G+ W + K W ++ + MK+R +
Sbjct: 205 WYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNW-KGSWYSMRQMAMKLRPK 259
|
| >d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human (Homo sapiens), beta [TaxId: 9606]} Length = 259 | Back information, alignment and structure |
|---|
| >d1fzda_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), fibrinogen-420, alpha-E [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
| >d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]} Length = 262 | Back information, alignment and structure |
|---|
| >d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 220 | Back information, alignment and structure |
|---|
| >d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), gamma [TaxId: 9606]} Length = 259 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 423 | |||
| d1jc9a_ | 220 | Tachylectin 5a {Japanese horseshoe crab (Tachypleu | 100.0 | |
| d1lwub1 | 259 | Fibrinogen C-terminal domains {Sea lamprey (Petrom | 100.0 | |
| d1re3b1 | 259 | Fibrinogen C-terminal domains {Human (Homo sapiens | 100.0 | |
| d1lwuc1 | 262 | Fibrinogen C-terminal domains {Sea lamprey (Petrom | 100.0 | |
| d1fida_ | 259 | Fibrinogen C-terminal domains {Human (Homo sapiens | 100.0 | |
| d1fzda_ | 197 | Fibrinogen C-terminal domains {Human (Homo sapiens | 100.0 | |
| d1gqea_ | 362 | Polypeptide chain release factor 2 (RF2) {Escheric | 87.78 |
| >d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Fibrinogen C-terminal domain-like superfamily: Fibrinogen C-terminal domain-like family: Fibrinogen C-terminal domain-like domain: Tachylectin 5a species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=100.00 E-value=1.2e-71 Score=527.46 Aligned_cols=188 Identities=38% Similarity=0.720 Sum_probs=178.2
Q ss_pred CCCCC-------CCCceEEEECCC-------cccccC----CceEEEEEec---CCccccccChHhhccccCCCCccccc
Q psy14534 232 PNDCE-------GHSGLQLISLGR-------SVLCDE----HHWMTIQRRY---NGMQEFNLKWTDYAQGFGSPESEFWI 290 (423)
Q Consensus 232 p~dC~-------~~sGvY~I~p~~-------~v~Cd~----~GWTVIQrR~---dGsv~FnR~W~eY~~GFG~~~gEfWL 290 (423)
|+||. ..||||+|+|.. .||||| +||||||||. ||+++|+|+|++|++|||++.+||||
T Consensus 2 P~dC~~i~~~G~~~SGvY~I~p~~~~~~~p~~VyCDm~t~GgGWtVIQrR~~~~dgs~~F~r~W~~Y~~GFG~~~gEfWL 81 (220)
T d1jc9a_ 2 PTDCADILLNGYRSSGGYRIWPKSWMTVGTLNVYCDMETDGGGWTVIQRRGNYGNPSDYFYKPWKNYKLGFGNIEKDFWL 81 (220)
T ss_dssp CCSHHHHHHTTCCSCEEEEECCTTHHHHCCEEEEEECSGGGSCEEEEEEECCSSCCTTTTCCCHHHHHHCEECTTSSEEC
T ss_pred CcChHHHHhcCCCCCceEEEecCCCCCCCCEEEEeeEecCCCCeEEEEEeccCCcccccccccHHHHhccCCCccccEee
Confidence 88997 579999999975 489998 5899999995 89999999999999999999999999
Q ss_pred cchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCccCcCCCCCCCcccCCCCCCCCC
Q psy14534 291 GNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTH 370 (423)
Q Consensus 291 GLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl~~hng~~FST~DrDnD~~~~n 370 (423)
|||+||+||++.+|+|+|+|+|++|...||.|+.|.|++|+++|+|++|+|+|+|||+|..|+|++|||+|+|||.+..|
T Consensus 82 GLe~ih~LT~~~~~~L~i~l~d~~g~~~~a~Y~~F~v~~e~~~Y~l~~g~y~G~agd~l~~~~g~~FST~D~dnd~~~~n 161 (220)
T d1jc9a_ 82 GNDRIFALTNQRNYMIRFDLKDKENDTRYAIYQDFWIENEDYLYCLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHETH 161 (220)
T ss_dssp CHHHHHHHHHHSCEEEEEEEECTTSCEEEEEEEEEEECCGGGTTCEECCCEEESSCSCSGGGTTCCCBBTTBCCSSSSSC
T ss_pred cchhhhhhhccCcceEEEEEeecCCCEEEEEeccccCCChhhCeeeecCCcccCCCcccccccccccccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCccCCcccccCCCcCCCCCCCC--------CCceeccCCCCceeeeceEEEEeeec
Q psy14534 371 CASNYEGGWWFSHCLHANLNGKFN--------LGLTWFHSEKNEWMAVARSHMKIRRR 420 (423)
Q Consensus 371 CA~~~~GGWWy~~C~~sNLNG~Y~--------~Gi~W~~~~~~~~~slk~~~M~IRp~ 420 (423)
||..+.|||||+.|+.|||||+|. .||.|..|. +.+|+||+|+|||||.
T Consensus 162 Ca~~~~GGWWy~~C~~sNLNG~Y~~~~~~~~~~Gi~W~~w~-g~~~slk~~~M~IRP~ 218 (220)
T d1jc9a_ 162 CAQTYKGGWWYDRCHESNLNGLYLNGEHNSYADGIEWRAWK-GYHYSLPQVEMKIRPV 218 (220)
T ss_dssp HHHHHCSCBCCSSSCSBCTTSBCCCEECSSSSCBSCBHHHH-TTSEECSEEEEEEEET
T ss_pred cccCCCCCeecCCCCCcCCCccccCCCCCCCCCEeEEecCC-CCccceeeEEEEEeeC
Confidence 999999999999999999999995 389998774 4578999999999996
|
| >d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]} | Back information, alignment and structure |
|---|
| >d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human (Homo sapiens), beta [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]} | Back information, alignment and structure |
|---|
| >d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), gamma [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fzda_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), fibrinogen-420, alpha-E [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|